Citrus Sinensis ID: 033398

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Secondary Structure (PSIPRED)
ccccEEEccccccccccccEEEEEcccccEEEEEEccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccccccEEEEEccccEEEEEEEEEcccccccccccccccccccccHHHHHHcccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mvqrltyrtrhsyatksnqhrvvktpggklvyqstkkrasgpkcpvtgkriqgiphlrpaeykrsrlsrnrrtvnrayggvlsggAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Flexible Loop (DISEMBL)
mvqrltyrtrhsyatksnqhrvvktpggklvyqstkkrasgpkcpvtgkriqgiphlrpaeykrsrlsrnrrtvnrayggvlsggavrERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Low Complexity Region (SEG)
MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFlveeqkivkkvlkiqkakeklASKS
Disordered region (IsUnstruct)
************************************************************************TVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKI***********
Disordered Region (DISOPRED)
*VQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAE***************AYGGVLSGGAVRERIIRAFLVEEQKI******************
Disordered Region (DISEMBL)
MVQRLTYRTRHSYATKSNQHRVVKTPGGKLV**************VTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQ**********
Disordered Region (DISPRO)
*VQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
P41098	120	60S ribosomal protein L34	N/A	no	1.0	1.0	0.958	1e-60
P40590	120	60S ribosomal protein L34	N/A	no	1.0	1.0	0.941	3e-59
Q42351	120	60S ribosomal protein L34	yes	no	1.0	1.0	0.916	9e-59
Q9FE65	119	60S ribosomal protein L34	yes	no	0.991	1.0	0.915	6e-58
Q9LJW6	120	60S ribosomal protein L34	no	no	1.0	1.0	0.891	8e-57
O42846	112	60S ribosomal protein L34	yes	no	0.883	0.946	0.564	9e-28
Q9URT8	111	60S ribosomal protein L34	no	no	0.883	0.954	0.555	5e-27
P87262	121	60S ribosomal protein L34	yes	no	0.9	0.892	0.554	4e-25
P40525	121	60S ribosomal protein L34	yes	no	0.9	0.892	0.545	6e-25
Q54LV8	122	60S ribosomal protein L34	yes	no	0.875	0.860	0.560	7e-25

>sp|P41098|RL34_TOBAC 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1

 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

Nicotiana tabacum (taxid: 4097)

>sp|P40590|RL34_PEA 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1

 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/120 (94%), Positives = 116/120 (96%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

Pisum sativum (taxid: 3888)

>sp|Q42351|RL341_ARATH 60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1

 Score =  224 bits (572), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR+RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE65|RL342_ARATH 60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3 SV=1

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 109/119 (91%), Positives = 114/119 (95%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR+RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 119
           EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJW6|RL343_ARATH 60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1

 Score =  218 bits (555), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/120 (89%), Positives = 113/120 (94%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR+RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

Arabidopsis thaliana (taxid: 3702)

>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl34a PE=3 SV=1

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 80/108 (74%), Gaps = 2/108 (1%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+TYR R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLK 108
           E+  +RLS N++TV RAYGG LS  AV++RI+RAFL+EEQKIVK+ LK
Sbjct: 61  EF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLK 106

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl34b PE=1 SV=1

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 79/108 (73%), Gaps = 2/108 (1%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+TYR R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLK 108
           E+  +RLS N++ V RAYGG LS  AV++RI+RAFL+EEQKIVK+ LK
Sbjct: 61  EF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLK 106

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL34A PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 78/110 (70%), Gaps = 2/110 (1%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+T+R R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1   MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQ 110
           +Y  + +S+  +TV+RAYGG      V+ERIIRAFL+EEQKIVKKV+K Q
Sbjct: 61  QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKEQ 108

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL34B PE=1 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 2/110 (1%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+T+R R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1   MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQ 110
           +Y  + +S+  +TV+RAYGG      V+ERI+RAFL+EEQKIVKKV+K Q
Sbjct: 61  QY--ATVSKTHKTVSRAYGGSRCANCVKERIVRAFLIEEQKIVKKVVKEQ 108

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54LV8|RL34_DICDI 60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34 PE=3 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 71/107 (66%), Gaps = 2/107 (1%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR R SY T SN  ++VKTPGG+LVYQ   K    P+C   G  + GIP LRP 
Sbjct: 1   MVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPY 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVL 107
           +YK   L ++RRTV+RAYGG      VR RI+RAFL+EEQK  K V 
Sbjct: 61  QYK--NLPKSRRTVSRAYGGSKCAKCVRNRIVRAFLIEEQKTAKIVF 105

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
449440806	120	PREDICTED: 60S ribosomal protein L34-lik	1.0	1.0	0.975	6e-60
388496468	120	unknown [Lotus japonicus] gi|388515013|g	1.0	1.0	0.966	3e-59
449440786	120	PREDICTED: 60S ribosomal protein L34-lik	1.0	1.0	0.966	3e-59
730558	120	RecName: Full=60S ribosomal protein L34	1.0	1.0	0.958	6e-59
224141383	120	predicted protein [Populus trichocarpa]	1.0	1.0	0.966	7e-59
313586461	120	60S ribosomal protein L34A [Hevea brasil	1.0	1.0	0.958	9e-59
225425690	120	PREDICTED: 60S ribosomal protein L34-lik	1.0	1.0	0.966	1e-58
351725287	120	uncharacterized protein LOC100305798 [Gl	1.0	1.0	0.966	1e-58
255562848	120	60S ribosomal protein L34, putative [Ric	1.0	1.0	0.95	2e-58
313586463	120	60S ribosomal protein L34B [Hevea brasil	1.0	1.0	0.95	2e-58

>gi|449440806|ref|XP_004138175.1| PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus] gi|449477237|ref|XP_004154968.1| PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus]

 Score =  234 bits (596), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/120 (97%), Positives = 119/120 (99%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496468|gb|AFK36300.1| unknown [Lotus japonicus] gi|388515013|gb|AFK45568.1| unknown [Lotus japonicus]

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 118/120 (98%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKA 120

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440786|ref|XP_004138165.1| PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus] gi|449459176|ref|XP_004147322.1| PREDICTED: 60S ribosomal protein L34-like isoform 1 [Cucumis sativus] gi|449459178|ref|XP_004147323.1| PREDICTED: 60S ribosomal protein L34-like isoform 2 [Cucumis sativus] gi|449459180|ref|XP_004147324.1| PREDICTED: 60S ribosomal protein L34-like isoform 3 [Cucumis sativus] gi|449482662|ref|XP_004156364.1| PREDICTED: 60S ribosomal protein L34-like isoform 1 [Cucumis sativus] gi|449482666|ref|XP_004156365.1| PREDICTED: 60S ribosomal protein L34-like isoform 2 [Cucumis sativus] gi|449482668|ref|XP_004156366.1| PREDICTED: 60S ribosomal protein L34-like isoform 3 [Cucumis sativus] gi|449482672|ref|XP_004156367.1| PREDICTED: 60S ribosomal protein L34-like isoform 4 [Cucumis sativus] gi|449529828|ref|XP_004171900.1| PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus]

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 118/120 (98%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|730558|sp|P41098.1|RL34_TOBAC RecName: Full=60S ribosomal protein L34 gi|436030|gb|AAA57158.1| 60S ribosomal protein L34 [Nicotiana tabacum] gi|436032|gb|AAA57159.1| 60S ribosomal protein L34 [Nicotiana tabacum]

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141383|ref|XP_002324052.1| predicted protein [Populus trichocarpa] gi|118485096|gb|ABK94411.1| unknown [Populus trichocarpa] gi|222867054|gb|EEF04185.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (587), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586461|gb|ADR71241.1| 60S ribosomal protein L34A [Hevea brasiliensis]

 Score =  230 bits (586), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 118/120 (98%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK AS+S
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASRS 120

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425690|ref|XP_002273676.1| PREDICTED: 60S ribosomal protein L34-like [Vitis vinifera] gi|225452827|ref|XP_002283595.1| PREDICTED: 60S ribosomal protein L34-like [Vitis vinifera] gi|147835694|emb|CAN75201.1| hypothetical protein VITISV_010664 [Vitis vinifera] gi|296082920|emb|CBI22221.3| unnamed protein product [Vitis vinifera] gi|296086370|emb|CBI31959.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQSTKKRA+GPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRANGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725287|ref|NP_001236831.1| uncharacterized protein LOC100305798 [Glycine max] gi|356568648|ref|XP_003552522.1| PREDICTED: 60S ribosomal protein L34-like [Glycine max] gi|255626627|gb|ACU13658.1| unknown [Glycine max]

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/120 (96%), Positives = 117/120 (97%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK ASKS
Sbjct: 61  EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKS 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562848|ref|XP_002522429.1| 60S ribosomal protein L34, putative [Ricinus communis] gi|223538314|gb|EEF39921.1| 60S ribosomal protein L34, putative [Ricinus communis]

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 118/120 (98%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK +S+S
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQSSRS 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586463|gb|ADR71242.1| 60S ribosomal protein L34B [Hevea brasiliensis]

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/120 (95%), Positives = 118/120 (98%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEK +S++
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQSSRT 120

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2202770	120	AT1G26880 [Arabidopsis thalian	0.791	0.791	0.936	1.5e-44
TAIR|locus:2026724	119	RPL34 "ribosomal protein L34"	0.791	0.798	0.926	5e-44
TAIR|locus:2090759	120	AT3G28900 [Arabidopsis thalian	0.791	0.791	0.894	1.2e-42
POMBASE|SPAC23A1.08c	112	rpl3401 "60S ribosomal protein	0.775	0.830	0.536	3.4e-22
DICTYBASE|DDB_G0286389	122	rpl34 "S60 ribosomal protein L	0.775	0.762	0.557	1.9e-21
POMBASE|SPCC1322.15	111	rpl3402 "60S ribosomal protein	0.775	0.837	0.526	1.9e-21
FB|FBgn0037686	168	RpL34b "Ribosomal protein L34b	0.775	0.553	0.526	3.9e-21
FB|FBgn0039406	162	RpL34a "Ribosomal protein L34a	0.775	0.574	0.526	4.9e-21
ASPGD|ASPL0000072709	116	AN4522 [Emericella nidulans (t	0.75	0.775	0.521	8e-21
WB|WBGene00004448	110	rpl-34 [Caenorhabditis elegans	0.775	0.845	0.568	1.7e-20

TAIR|locus:2202770 AT1G26880 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRL YR+RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct:     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:    61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2026724 RPL34 "ribosomal protein L34" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 88/95 (92%), Positives = 91/95 (95%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRL YR+RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct:     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:    61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0015934 "large ribosomal subunit" evidence=TAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2090759 AT3G28900 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 85/95 (89%), Positives = 90/95 (94%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRL YR+RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPA
Sbjct:     1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             EYKRSRL+RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct:    61 EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

POMBASE|SPAC23A1.08c rpl3401 "60S ribosomal protein L34" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 51/95 (53%), Positives = 68/95 (71%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             M QR+TYR R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct:     1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             E+  +RLS N++TV RAYGG LS  AV++RI+RAF
Sbjct:    61 EF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAF 93

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

DICTYBASE|DDB_G0286389 rpl34 "S60 ribosomal protein L34" [Dictyostelium discoideum (taxid:44689)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 53/95 (55%), Positives = 63/95 (66%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRLTYR R SY T SN  ++VKTPGG+LVYQ   K    P+C   G  + GIP LRP 
Sbjct:     1 MVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPY 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             +YK   L ++RRTV+RAYGG      VR RI+RAF
Sbjct:    61 QYKN--LPKSRRTVSRAYGGSKCAKCVRNRIVRAF 93

GO:0006412 "translation" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPCC1322.15 rpl3402 "60S ribosomal protein L34" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 50/95 (52%), Positives = 67/95 (70%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             M QR+TYR R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP 
Sbjct:     1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             E+  +RLS N++ V RAYGG LS  AV++RI+RAF
Sbjct:    61 EF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAF 93

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

FB|FBgn0037686 RpL34b "Ribosomal protein L34b" [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRLT R R SY T+SN+ R+V+TPGG+LVYQ  KK  + P+C    ++++GI   RP+
Sbjct:     1 MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLKGITPSRPS 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             E  R R+S+  +TV+R YGGVL    +RERI+RAF
Sbjct:    61 E--RPRMSKRLKTVSRTYGGVLCHSCLRERIVRAF 93

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA

FB|FBgn0039406 RpL34a "Ribosomal protein L34a" [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 50/95 (52%), Positives = 67/95 (70%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             MVQRLT R R SY T+SN+ R+V+TPGG+LVYQ  KK  + P+C    +++ GI   RP+
Sbjct:     1 MVQRLTLRRRLSYNTRSNKRRIVRTPGGRLVYQYVKKNPTVPRCGQCKEKLHGITASRPS 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
             E  R R+S+  +TV+R YGGVL    +RERI+RAF
Sbjct:    61 E--RPRMSKRLKTVSRTYGGVLCHSCLRERIVRAF 93

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

ASPGD|ASPL0000072709 AN4522 [Emericella nidulans (taxid:162425)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/92 (52%), Positives = 66/92 (71%)

Query:     4 RLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYK 63
             RL YR R+ Y T+SN+ R+VKTPGG+L YQ  KK+ + PKC   G ++ GIP LRP EY 
Sbjct:     5 RLQYRRRNPYNTRSNRVRIVKTPGGELRYQHLKKQGTAPKCGDCGIKLPGIPALRPREY- 63

Query:    64 RSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
              +++SR ++ V+RAYGG    G V++RI+RAF
Sbjct:    64 -AQISRPKKNVSRAYGGSRCAGCVKDRIVRAF 94

GO:0005829 "cytosol" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

WB|WBGene00004448 rpl-34 [Caenorhabditis elegans (taxid:6239)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 54/95 (56%), Positives = 62/95 (65%)

Query:     1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
             M  R+TYR R SY T SN+ R+VKTPGG+LV Q  KKR   PKC  TG ++ GI   RP 
Sbjct:     1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query:    61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
               +   L RN RTV RAYGG LS  AV+ERI RAF
Sbjct:    61 ALRL--LKRNERTVTRAYGGCLSPNAVKERITRAF 93

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45842	RL34_AEDAL	No assigned EC number	0.5585	0.9	0.8307	N/A	no
P49207	RL34_HUMAN	No assigned EC number	0.5128	0.9416	0.9658	yes	no
P0DJ23	RL34_TETTS	No assigned EC number	0.5327	0.8583	0.8373	N/A	no
P40590	RL34_PEA	No assigned EC number	0.9416	1.0	1.0	N/A	no
Q7ZWJ7	RL34_DANRE	No assigned EC number	0.5128	0.9416	0.9658	yes	no
Q90YT5	RL34_ICTPU	No assigned EC number	0.5042	0.9416	0.9658	N/A	no
Q9FE65	RL342_ARATH	No assigned EC number	0.9159	0.9916	1.0	yes	no
Q42351	RL341_ARATH	No assigned EC number	0.9166	1.0	1.0	yes	no
O42846	RL34A_SCHPO	No assigned EC number	0.5648	0.8833	0.9464	yes	no
Q9LJW6	RL343_ARATH	No assigned EC number	0.8916	1.0	1.0	no	no
Q54LV8	RL34_DICDI	No assigned EC number	0.5607	0.875	0.8606	yes	no
P40525	RL34B_YEAST	No assigned EC number	0.5454	0.9	0.8925	yes	no
Q9D1R9	RL34_MOUSE	No assigned EC number	0.5128	0.9416	0.9658	yes	no
P41098	RL34_TOBAC	No assigned EC number	0.9583	1.0	1.0	N/A	no
P87262	RL34A_YEAST	No assigned EC number	0.5545	0.9	0.8925	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
PLN03166	96	PLN03166, PLN03166, 60S ribosomal protein L34; Pro	4e-53
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	2e-40
pfam01199	94	pfam01199, Ribosomal_L34e, Ribosomal protein L34e	2e-35
COG2174	93	COG2174, RPL34A, Ribosomal protein L34E [Translati	1e-21
PRK04059	88	PRK04059, rpl34e, 50S ribosomal protein L34e; Vali	2e-08

>gnl|CDD|178710 PLN03166, PLN03166, 60S ribosomal protein L34; Provisional

 Score =  161 bits (409), Expect = 4e-53
 Identities = 93/96 (96%), Positives = 94/96 (97%)

Query: 1  MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFL 96
          EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAFL
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFL 96

Length = 96

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score =  130 bits (330), Expect = 2e-40
 Identities = 73/120 (60%), Positives = 90/120 (75%), Gaps = 2/120 (1%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+TYR R+SY T+SN+ R+VKTPGG+LV Q  KK++SGPKC   GK + GI  LRP 
Sbjct: 1   MAQRVTYRRRNSYNTRSNKVRLVKTPGGRLVVQKRKKKSSGPKCGDCGKVLAGIKALRPT 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYK  +LSR  RTV+RAYGGVL    VR+RI+RAFLVEEQKIVK+VLK +  ++K   K 
Sbjct: 61  EYK--QLSRRERTVSRAYGGVLCHKCVRDRIVRAFLVEEQKIVKQVLKEKAKQKKQKKKK 118

Length = 135

>gnl|CDD|201657 pfam01199, Ribosomal_L34e, Ribosomal protein L34e

 Score =  116 bits (294), Expect = 2e-35
 Identities = 57/96 (59%), Positives = 69/96 (71%), Gaps = 2/96 (2%)

Query: 1  MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQR+TYR R SY T+SN+ R V+TPGG+LVY   KK+ S PKC   GK + GIP LRP 
Sbjct: 1  MVQRVTYRRRPSYRTRSNRRRYVRTPGGRLVYHYEKKKPSKPKCGDCGKPLNGIPRLRPR 60

Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFL 96
          E +  RLS+ ++ V+R YGGVL    VRERIIRAFL
Sbjct: 61 ELR--RLSKTQKRVSRPYGGVLCHKCVRERIIRAFL 94

Length = 94

>gnl|CDD|225085 COG2174, RPL34A, Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]

 Score = 81.3 bits (201), Expect = 1e-21
 Identities = 45/95 (47%), Positives = 61/95 (64%), Gaps = 2/95 (2%)

Query: 8   RTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRL 67
             R +Y ++SN+ R VKTPGG+ V    KK+ + PKC + G+ + GIP  RP E++  RL
Sbjct: 1   MPRPAYRSRSNRRRYVKTPGGRTVIHYEKKKPTIPKCAICGRPLGGIPRGRPREFR--RL 58

Query: 68  SRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKI 102
           S+ ++   R YGG L    VRERI RAF +EEQKI
Sbjct: 59  SKTKKRPERPYGGYLCANCVRERIKRAFRIEEQKI 93

Length = 93

>gnl|CDD|179734 PRK04059, rpl34e, 50S ribosomal protein L34e; Validated

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 13 YATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRR 72
          Y ++S +   V+TPGG+ V    +K+ S  KC + GK + G+P  RP   +  +L +  +
Sbjct: 6  YRSRSLRRVYVRTPGGRTVIHYERKKPSKAKCAICGKPLNGVPRGRP--VEIRKLGKTEK 63

Query: 73 TVNRAYGGVLSGGAVRERIIRA 94
             R YGG L    ++  I   
Sbjct: 64 RPERPYGGYLCPKCLKRLIKAK 85

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
PTZ00074	135	60S ribosomal protein L34; Provisional	100.0
KOG1790	121	consensus 60s ribosomal protein L34 [Translation,	100.0
PLN03166	96	60S ribosomal protein L34; Provisional	100.0
PF01199	94	Ribosomal_L34e: Ribosomal protein L34e; InterPro:	100.0
COG2174	93	RPL34A Ribosomal protein L34E [Translation, riboso	100.0
PRK04059	88	rpl34e 50S ribosomal protein L34e; Validated	100.0

>PTZ00074 60S ribosomal protein L34; Provisional

Probab=100.00  E-value=8.9e-62  Score=363.14  Aligned_cols=115  Identities=63%  Similarity=0.956  Sum_probs=112.1

Q ss_pred             CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCC
Q 033398            1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG   80 (120)
                      |+||||||||++|||+||+++++|||||+|||||++|+++.|+|||||.+|+||+++||.+++  +|++++++|+|||||
T Consensus         1 M~qR~t~rrr~~YnTrSnk~r~vrTPGGrlV~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~--rlsK~~KtvsRaYGG   78 (135)
T PTZ00074          1 MAQRVTYRRRNSYNTRSNKVRLVKTPGGRLVVQKRKKKSSGPKCGDCGKVLAGIKALRPTEYK--QLSRRERTVSRAYGG   78 (135)
T ss_pred             CCcceEecccCCCCCCCCeeEEEECCCCceEEEEeccCCCCCCCCCCCCccCCccCCchHHHH--HccccCCCccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033398           81 VLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA  117 (120)
Q Consensus        81 ~lC~kcVr~rIvrAFL~EEqkivk~v~~~~~~~~~~~  117 (120)
                      ++||+||+|||++|||+||||||++|++++++++++.
T Consensus        79 ~lC~~CVr~rIirAFLiEEqKivkkv~k~~~~~~k~~  115 (135)
T PTZ00074         79 VLCHKCVRDRIVRAFLVEEQKIVKQVLKEKAKQKKQK  115 (135)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999766643

>KOG1790 consensus 60s ribosomal protein L34 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-55  Score=322.41  Aligned_cols=114  Identities=67%  Similarity=0.999  Sum_probs=110.9

Q ss_pred             CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCC
Q 033398            1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG   80 (120)
                      |+|||||++|++|||+||++++++||||+||++|.+|.++.|+|||||..|+||+++||.+++  ++|++.|+|||||||
T Consensus         1 mvqrlty~rrlsYnT~SNk~r~vrTPg~~lv~q~~kK~~~~pkc~~c~~~l~Gi~~~RPk~~~--rlsk~~KtVsRayGG   78 (121)
T KOG1790|consen    1 MVQRLTYRRRLSYNTRSNKTRLVRTPGGRLVYQYVKKKAKLPKCGDCGMRLQGIPALRPKELM--RLSKSHKTVSRAYGG   78 (121)
T ss_pred             CchhHHhHhhcccccccCccccccCCCceehhHhhHhhccCCCCCcCCcccCCCCCcCHHHHH--HHhhhHHHhhhhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033398           81 VLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKL  116 (120)
Q Consensus        81 ~lC~kcVr~rIvrAFL~EEqkivk~v~~~~~~~~~~  116 (120)
                      ++|++||+|||++||||||||||+++++++...++.
T Consensus        79 ~~ca~~vrerI~rAFLi~EQkIV~k~~~~~~~~~~~  114 (121)
T KOG1790|consen   79 VLCAKCVRERIIRAFLIEEQKIVKKVLKAQEALKEL  114 (121)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998766553

>PLN03166 60S ribosomal protein L34; Provisional

Probab=100.00  E-value=5.9e-53  Score=300.36  Aligned_cols=96  Identities=97%  Similarity=1.430  Sum_probs=94.4

Q ss_pred             CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCC
Q 033398            1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG   80 (120)
                      |+||||||||++|||+||+++++|||||+||+||++|++++|+|||||.+|+||+++||.|+++.+|||++|+|||||||
T Consensus         1 m~~r~t~rrr~~YnT~Snk~r~vkTPGGrlv~~y~kK~~~~pkC~~cg~~L~Gi~~~Rp~~~~~~~lsK~~K~vsRaYGG   80 (96)
T PLN03166          1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG   80 (96)
T ss_pred             CCcceEEeeccCccCcCCeeEEEECCCCcEEEEEeccCCCCCcCCCCCCccCCccCCChhhhhhhhcccCcCccccCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999766899999999999999


Q ss_pred             cchHHHHHHHHHHHHH
Q 033398           81 VLSGGAVRERIIRAFL   96 (120)
Q Consensus        81 ~lC~kcVr~rIvrAFL   96 (120)
                      ++||+||+|+|++|||
T Consensus        81 ~lc~~cvr~rIvrAFL   96 (96)
T PLN03166         81 VLSGSAVRERIIRAFL   96 (96)
T ss_pred             cccHHHHHHHHHHHhC
Confidence            9999999999999998

>PF01199 Ribosomal_L34e: Ribosomal protein L34e; InterPro: IPR008195 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.9e-52  Score=294.20  Aligned_cols=94  Identities=60%  Similarity=0.980  Sum_probs=78.7

Q ss_pred             CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCC
Q 033398            1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG   80 (120)
                      ||||||||+|++|||+||+++++|||||+|||||++|+++.|+|||||.+|+||+++||.|++  +|+|++++|||||||
T Consensus         1 M~~rvt~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~kK~~~~pkC~~cg~~L~Gi~~~rp~~~~--rl~k~~k~vsRaYGG   78 (94)
T PF01199_consen    1 MVQRVTYRRRPSYNTRSNKRRYVRTPGGRLVYHYIKKKPKKPKCGDCGKPLNGIPALRPVELR--RLSKRQKTVSRAYGG   78 (94)
T ss_dssp             -HHHHHHHHSS-STTCSGSSEEEE-SSSEEEEEE-S--TT--BSTSSS-BSSSS-SS-SSTTG--TS-CHCH--CCTSSS
T ss_pred             CCcceeeccCCCccCccceEEEeEcCCCcEEEEeccccCCCCCcCccCCcccccccccHHHHh--hcccCCCCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHH
Q 033398           81 VLSGGAVRERIIRAFL   96 (120)
Q Consensus        81 ~lC~kcVr~rIvrAFL   96 (120)
                      ++||+||+|+|++|||
T Consensus        79 ~lc~~cvr~rI~rAFL   94 (94)
T PF01199_consen   79 SLCHKCVRERIKRAFL   94 (94)
T ss_dssp             S-HHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhC
Confidence            9999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins belong to the L34e family. These include, vertebrate L34, mosquito L31 [], plant L34 [], yeast putative ribosomal protein YIL052c and archaebacterial L34e.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_i 3IZS_i 4A19_L 4A1D_L 4A18_L 4A1B_L.

>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.3e-45  Score=257.88  Aligned_cols=92  Identities=49%  Similarity=0.868  Sum_probs=90.7

Q ss_pred             CCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHH
Q 033398            9 TRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVR   88 (120)
Q Consensus         9 rr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr   88 (120)
                      .+++|+|+||++++||||||++|+||++|+++.|+|++||.+|+||+++||.|+.  ++|+++|+|+|||||++|++||+
T Consensus         2 ~rp~YrSRS~rr~~vkTPgGr~v~h~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~--r~skt~krp~RpYGG~lc~~c~~   79 (93)
T COG2174           2 PRPAYRSRSNRRRYVKTPGGRTVIHYEKKKPTIPKCAICGRPLGGIPRGRPREFR--RLSKTKKRPERPYGGYLCANCVR   79 (93)
T ss_pred             CCcccccccceeEEEECCCCcEEEeeeeccCCCCcccccCCccCCccCCCcHHHH--hccccccCcCCCcCceecHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033398           89 ERIIRAFLVEEQKI  102 (120)
Q Consensus        89 ~rIvrAFL~EEqki  102 (120)
                      ++|++|||+|||+|
T Consensus        80 ~~i~~a~r~~~~ki   93 (93)
T COG2174          80 ERIKRAFRIEEQKI   93 (93)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999986

>PRK04059 rpl34e 50S ribosomal protein L34e; Validated

Probab=100.00  E-value=3.8e-42  Score=241.80  Aligned_cols=83  Identities=31%  Similarity=0.622  Sum_probs=81.5

Q ss_pred             CCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHH
Q 033398           10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRE   89 (120)
Q Consensus        10 r~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~   89 (120)
                      ++.|||+||++++||||||+|||||++|+++.|+|||||.+|+||+++||.|++  +|||++|+|||||||++||+||+|
T Consensus         3 ~p~YnT~Snk~r~vrTPGGrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~Rp~~~~--rlsK~~K~vsRaYGG~lc~~cvr~   80 (88)
T PRK04059          3 APRYRSRSLRRVYVRTPGGRTVIHYERKKPSKAKCAICGKPLNGVPRGRPVEIR--KLGKTEKRPERPYGGYLCPKCLKR   80 (88)
T ss_pred             CccccccCCceEEEECCCCCEEEEEeccCCCCCcCCCCCCccCCccCcchHHHH--hcccccCCcccCcCceecHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHH
Q 033398           90 RIIRA   94 (120)
Q Consensus        90 rIvrA   94 (120)
                      +|+.+
T Consensus        81 rI~~~   85 (88)
T PRK04059         81 LIKAK   85 (88)
T ss_pred             HHHHH
Confidence            99876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	120
3izr_i	119	Localization Of The Large Subunit Ribosomal Protein		6e-45
3izs_i	118	Localization Of The Large Subunit Ribosomal Protein		1e-19
3u5e_g	121	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-19
4a18_L	123	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-18
3zf7_j	170	High-resolution Cryo-electron Microscopy Structure		3e-14

>pdb|3IZR|II Chain i, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 119

Iteration: 1
 Score =  175 bits (443), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 88/95 (92%)
Query: 1  MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRLTYR RHSYATKSNQ RVVKTPGGKLVYQ TKKRASGPKCPVTGK+IQGIPHLRP 
Sbjct: 1  MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPT 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKR RLSRNRRTVNR YGGVLSG AVRERIIRAF
Sbjct: 61 EYKRPRLSRNRRTVNRPYGGVLSGPAVRERIIRAF 95

>pdb|3IZS|II Chain i, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 118

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 1  MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          M QR+T+R R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1  MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          +Y  + +S+  +TV+RAYGG      V+ERIIRAF
Sbjct: 61 QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93

>pdb|3U5E|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 121

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 1  MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
          M QR+T+R R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1  MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 61 EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          +Y  + +S+  +TV+RAYGG      V+ERIIRAF
Sbjct: 61 QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAF 93

>pdb|4A18|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 123

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 1  MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRI--QGIPHLR 58
          M QR+TYR R SY T+SN+ R VKTPGG+LV Q  KK  +  KC   G  +   GI  +R
Sbjct: 1  MAQRITYRRRCSYNTRSNKVRKVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVR 60
Query: 59 PAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          PAEY  + ++R+ +TV+R YGG L    VR RIIRAF
Sbjct: 61 PAEY--ATIARSAKTVSRVYGGELCHTCVRSRIIRAF 95

>pdb|3ZF7|JJ Chain j, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 4  RLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCP-VTG-KRIQGIPHLRPAE 61
          R+ YR R  YAT+ N+ R+V+TPG +LV Q   KR+ GP  P V G KR+ G   LR   
Sbjct: 5  RVQYRRRMHYATRGNRMRLVRTPGNRLVMQKRGKRSQGPHTPWVLGHKRLAGTKALR--- 61
Query: 62 YKRSRLS-RNRRTVNRAYGGVLSGGAVRERIIRAF 95
          + ++RL+ R+++T +R YGGVLS   VR+RI+RAF
Sbjct: 62 HTKARLAPRHQKTTSRPYGGVLSHEQVRDRIVRAF 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
3iz5_I	224	60S ribosomal protein L10 (L10E); eukaryotic ribos	3e-38
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	1e-31
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	7e-31

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i Length = 121

 Score =  107 bits (267), Expect = 1e-31
 Identities = 63/120 (52%), Positives = 81/120 (67%), Gaps = 2/120 (1%)

Query: 1   MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60
           M QR+T+R R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP 
Sbjct: 1   MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60

Query: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           +Y  + +S+  +TV+RAYGG      V+ERIIRAFL+EEQKIVKKV+K Q    K + K 
Sbjct: 61  QY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKSEKK 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
3u5e_g	121	60S ribosomal protein L34-A, 60S ribosomal protein	100.0
4a18_L	123	RPL34; ribosome, eukaryotic initiation factor 6, E	100.0
3iz5_i	119	60S ribosomal protein L34 (L34E); eukaryotic ribos	100.0
3j21_d	89	50S ribosomal protein L34E; archaea, archaeal, KIN	100.0

>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i

Probab=100.00  E-value=2.7e-64  Score=370.01  Aligned_cols=115  Identities=54%  Similarity=0.817  Sum_probs=110.9

Q ss_pred             CccceeccCCCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCC
Q 033398            1 MVQRLTYRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGG   80 (120)
Q Consensus         1 m~~R~t~rrr~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG   80 (120)
                      ||||||||||++|||+||++++++||||+|||||++|+++.|+|||||.+|+||+++||.+++  +||+++|+|||||||
T Consensus         1 M~qR~tyrrR~sYnTrSnk~r~vkTPGGrlV~~y~KK~~~~pkCg~Cg~~L~GI~~~RP~e~~--rlsK~~KtvsRaYGG   78 (121)
T 3u5e_g            1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYA--TVSKTHKTVSRAYGG   78 (121)
T ss_dssp             -CCCCCCSSSCCSCCGGGBCCEEECTTSCEEECCBCCCCCCCBCTTTCCBCTTCCCCCGGGGG--SSCGGGSCCSSTTTT
T ss_pred             CCcceEecCcCCCcCCcCeeEEeECCCCceEEEEeccCCCCCCCCCCCCccCCccCCcHHHHH--hcccCCCCcccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033398           81 VLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA  117 (120)
Q Consensus        81 ~lC~kcVr~rIvrAFL~EEqkivk~v~~~~~~~~~~~  117 (120)
                      ++||+||+|||++||||||||||++||++|+++++++
T Consensus        79 ~lC~~CVr~RI~rAFLiEEqKivkkvlk~~~~~~k~~  115 (121)
T 3u5e_g           79 SRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKS  115 (121)
T ss_dssp             TSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987765

>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.4e-41  Score=237.08  Aligned_cols=83  Identities=25%  Similarity=0.550  Sum_probs=81.3

Q ss_pred             CCCCCCCCceeEEeecCCCceEEEeeecCCCCCCCCCCCCCCCCccCCChhhhhhhccccCCCccccccCCcchHHHHHH
Q 033398           10 RHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRE   89 (120)
Q Consensus        10 r~~Y~TrSnk~~~vrTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~~~~~~rlsK~~ktvsRaYGG~lC~kcVr~   89 (120)
                      +++|||+||+++++|||||+|||||+||+++.|+|||||.+|+||+++||.|++  +|+|++|+|||||| ++||+||+|
T Consensus         2 ~p~Y~TrSnk~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~Gi~~~Rp~~~~--rlsK~~KtvsRaYG-~lC~~Cvr~   78 (89)
T 3j21_d            2 KPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMR--KLPKTKKRPERPMP-HLCPRCMRK   78 (89)
T ss_dssp             CCCSCCSSCCEEEECCTTSCCEEEECCCCCCCCBCSSSCCBCTTCCCCCTTGGG--GSCHHHHCCSSSCT-TSCHHHHHH
T ss_pred             CCccccccCceEEEECCCCcEEEEEecccCCCCCCCCCCCccCCccCccHHHHH--hcccCCCCcCCCcc-cchHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999  99999999999999 999999999


Q ss_pred             HHHHHH
Q 033398           90 RIIRAF   95 (120)
Q Consensus        90 rIvrAF   95 (120)
                      +|++|-
T Consensus        79 rI~~~~   84 (89)
T 3j21_d           79 VMKEQI   84 (89)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00