Citrus Sinensis ID: 033409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGLRFRYKESISETFHTISS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEHHHEccccccHHHHHHHHHHHHHHHHHHHHHHcccHcccccccEEEEEEEEEccccccEccc
Coil and Loop (DISEMBL)
maateensqlfpIFILTIMALPLVPYTILKLCHAFSKKIKtihcqcsdcarsgkyRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKstsrehtrfgtwglrFRYKESISETFHTISS
Flexible Loop (DISEMBL)
maateensqlfPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIkstsrehtrfgtwglrfrykesisetfhtiss
Low Complexity Region (SEG)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNlslvllwvimiiliyyiKSTSREHTRFGTWGLRFRYKESISETFHTISS
Disordered region (IsUnstruct)
*********LFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGLRFRYKESI*********
Disordered Region (DISOPRED)
******N*QLFPIFILTIMALPLVPYTILKL***********************************STCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGLRFRYKESISETFHT***
Disordered Region (DISEMBL)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGLRFRYKESI*********
Disordered Region (DISPRO)
******NSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGLRFRYKESISETF*****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGLRFRYKESISETFHTISS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
225464625	688	PREDICTED: translocation protein SEC63 h	0.783	0.136	0.829	5e-42
302143768	618	unnamed protein product [Vitis vinifera]	0.783	0.152	0.829	1e-40
449445973	685	PREDICTED: translocation protein SEC63 h	0.783	0.137	0.787	5e-39
356530479	685	PREDICTED: translocation protein SEC63 h	0.783	0.137	0.776	7e-39
255545152	682	heat shock protein binding protein, puta	0.858	0.151	0.747	8e-39
224135305	685	predicted protein [Populus trichocarpa]	0.858	0.150	0.708	1e-38
356556432	685	PREDICTED: translocation protein SEC63 h	0.783	0.137	0.765	2e-38
224079782	685	predicted protein [Populus trichocarpa]	0.783	0.137	0.765	5e-38
449533991	242	PREDICTED: translocation protein SEC63 h	0.783	0.388	0.787	4e-37
145337785	687	translocation protein SEC63 [Arabidopsis	0.816	0.142	0.724	3e-36

>gi|225464625|ref|XP_002275958.1| PREDICTED: translocation protein SEC63 homolog [Vitis vinifera]

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/94 (82%), Positives = 88/94 (93%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMALPLVPYTI+KLCHA S+K K+IHCQCS+C RSGKYR+SIF
Sbjct: 1  MAASEENSALFPIFILTIMALPLVPYTIMKLCHAASRKTKSIHCQCSECTRSGKYRRSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISNFSTCSNL+LVLLWV+MIIL+YYIK  S+E
Sbjct: 61 KRISNFSTCSNLTLVLLWVVMIILVYYIKHISQE 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143768|emb|CBI22629.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 88/94 (93%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMALPLVPYTI+KLCHA S+K K+IHCQCS+C RSGKYR+SIF
Sbjct: 1  MAASEENSALFPIFILTIMALPLVPYTIMKLCHAASRKTKSIHCQCSECTRSGKYRRSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISNFSTCSNL+LVLLWV+MIIL+YYIK  S+E
Sbjct: 61 KRISNFSTCSNLTLVLLWVVMIILVYYIKHISQE 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445973|ref|XP_004140746.1| PREDICTED: translocation protein SEC63 homolog [Cucumis sativus]

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/94 (78%), Positives = 84/94 (89%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MA +EENS LFPIFILTIMALPLVPYTILKLC A SKK K IHCQC++C+RSGKYRKSIF
Sbjct: 1  MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCAECSRSGKYRKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRI+NFST SNL+LVLLW+ M +L+YYIK+ SRE
Sbjct: 61 KRIANFSTYSNLTLVLLWIFMFVLVYYIKNISRE 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530479|ref|XP_003533808.1| PREDICTED: translocation protein SEC63 homolog [Glycine max]

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 73/94 (77%), Positives = 85/94 (90%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMA+P+VPYTI KLC   SKK K+IHCQCS+C+RSGKY KSIF
Sbjct: 1  MAASEENSALFPIFILTIMAIPIVPYTITKLCRFASKKSKSIHCQCSECSRSGKYHKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISN STCSNL+L+LLWV+MI+L+YYIK+ SRE
Sbjct: 61 KRISNVSTCSNLTLLLLWVVMIVLVYYIKTMSRE 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545152|ref|XP_002513637.1| heat shock protein binding protein, putative [Ricinus communis] gi|223547545|gb|EEF49040.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 89/103 (86%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MA +EENS LFPIFILTIMALPLVPYTI+KLCHA SKK K+I+C CS+C RSGKYRKSIF
Sbjct: 1   MATSEENSALFPIFILTIMALPLVPYTIMKLCHAASKKSKSIYCNCSECFRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGL 103
           K+ISNFSTCSNL+L+LLWVIMI L+YYIK+ SRE   F  + +
Sbjct: 61  KKISNFSTCSNLTLILLWVIMIFLVYYIKNMSREIQVFDPYAI 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135305|ref|XP_002327614.1| predicted protein [Populus trichocarpa] gi|222836168|gb|EEE74589.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/103 (70%), Positives = 87/103 (84%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MAA+EENS LFPIFILTIMA+PLVPYT++KLC A SKK K+IHC CS+C RSGKYRKSIF
Sbjct: 1   MAASEENSALFPIFILTIMAIPLVPYTVMKLCRAASKKSKSIHCNCSECVRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRFGTWGL 103
           KRISNFST SNL+L+L+W +MI L+YYIK+ SRE   F  + +
Sbjct: 61  KRISNFSTYSNLTLILVWAVMIFLVYYIKNMSREIQVFDPYAI 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556432|ref|XP_003546530.1| PREDICTED: translocation protein SEC63 homolog [Glycine max]

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/94 (76%), Positives = 84/94 (89%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMA+P+VPYTI KLC A SKK K+IHC CS+C+RSGKY KSIF
Sbjct: 1  MAASEENSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCHCSECSRSGKYHKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISN STCSN +L+LLWV+MI+L+YYIK+ SRE
Sbjct: 61 KRISNVSTCSNFTLLLLWVVMIVLVYYIKTMSRE 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079782|ref|XP_002305942.1| predicted protein [Populus trichocarpa] gi|118481069|gb|ABK92488.1| unknown [Populus trichocarpa] gi|222848906|gb|EEE86453.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 72/94 (76%), Positives = 83/94 (88%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFI+TIMA+PLVPYT++KLC A SKK K IHC CS+C RSGKYRKSIF
Sbjct: 1  MAASEENSALFPIFIITIMAIPLVPYTVMKLCRAASKKSKIIHCNCSECLRSGKYRKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRIS FSTCSNL+L+LLWV+MI L+ YIK+ SRE
Sbjct: 61 KRISKFSTCSNLTLILLWVVMIFLVSYIKNMSRE 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533991|ref|XP_004173953.1| PREDICTED: translocation protein SEC63 homolog, partial [Cucumis sativus]

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 84/94 (89%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MA +EENS LFPIFILTIMALPLVPYTILKLC A SKK K IHCQC++C+RSGKYRKSIF
Sbjct: 1  MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCAECSRSGKYRKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRI+NFST SNL+LVLLW+ M +L+YYIK+ SRE
Sbjct: 61 KRIANFSTYSNLTLVLLWIFMFVLVYYIKNISRE 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145337785|ref|NP_178112.2| translocation protein SEC63 [Arabidopsis thaliana] gi|186496567|ref|NP_001031306.2| translocation protein SEC63 [Arabidopsis thaliana] gi|186496571|ref|NP_001117623.1| translocation protein SEC63 [Arabidopsis thaliana] gi|110743727|dbj|BAE99700.1| putative DnaJ protein [Arabidopsis thaliana] gi|332198208|gb|AEE36329.1| translocation protein SEC63 [Arabidopsis thaliana] gi|332198209|gb|AEE36330.1| translocation protein SEC63 [Arabidopsis thaliana] gi|332198210|gb|AEE36331.1| translocation protein SEC63 [Arabidopsis thaliana]

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/98 (72%), Positives = 84/98 (85%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMA+PLVPYT++KL  A SKK +TIHCQC +C RSGKY++S+F
Sbjct: 1  MAASEENSALFPIFILTIMAIPLVPYTMVKLSGALSKKQRTIHCQCLECDRSGKYKRSLF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTRF 98
          K+ISNFST SNL+LVLLWV+MI LIYY K+ SRE   F
Sbjct: 61 KKISNFSTWSNLTLVLLWVVMIFLIYYTKNMSREAQVF 98

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
TAIR|locus:2016354	687	ATERDJ2A [Arabidopsis thaliana	0.858	0.149	0.563	4.2e-24
TAIR|locus:2127373	661	ATERDJ2B [Arabidopsis thaliana	0.858	0.155	0.524	9.7e-23

TAIR|locus:2016354 ATERDJ2A [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 58/103 (56%), Positives = 71/103 (68%)

Query:     1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
             MAA+EENS LFPIFILTIMA+PLVPYT++KL  A SKK +TIHCQC +C RSGKY++S+F
Sbjct:     1 MAASEENSALFPIFILTIMAIPLVPYTMVKLSGALSKKQRTIHCQCLECDRSGKYKRSLF 60

Query:    61 KRISNFSTCSNXXXXXXXXXXXXXXXXXKSTSREHTRFGTWGL 103
             K+ISNFST SN                 K+ SRE   F  + +
Sbjct:    61 KKISNFSTWSNLTLVLLWVVMIFLIYYTKNMSREAQVFDPFSI 103

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2127373 ATERDJ2B [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 9.7e-23, P = 9.7e-23
 Identities = 54/103 (52%), Positives = 70/103 (67%)

Query:     1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
             MA +EENS LFPIFILT+MA+PLVPYT +KL  AFSKK ++IHCQC +C RSGKY++SI 
Sbjct:     1 MAESEENSVLFPIFILTMMAIPLVPYTFVKLSRAFSKKQRSIHCQCLECDRSGKYKRSIS 60

Query:    61 KRISNFSTCSNXXXXXXXXXXXXXXXXXKSTSREHTRFGTWGL 103
             + IS+F++CSN                 K+ SRE   F  +G+
Sbjct:    61 QSISSFTSCSNLTVVLLWIVMIFLIYHTKNMSRESQLFEPFGI 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.132   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      120       103   0.00091  102 3  11 22  0.47    29
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.75u 0.13s 9.88t   Elapsed:  00:00:01
  Total cpu time:  9.75u 0.13s 9.88t   Elapsed:  00:00:01
  Start:  Sat May 11 02:17:13 2013   End:  Sat May 11 02:17:14 2013

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	120
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	5e-06

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 5  EENSQLFPIFILTIMALPLVPYTI-LKLCHAFSKKIKTIHCQCSDCARSGK--YRKSIFK 61
          +E+    P F+L+ +   ++P T  L    + SK+++ + C C  C    K   RKSIFK
Sbjct: 8  DESGLASPYFVLSGLVPVVLPMTYDLIEGPSASKELRRVRCACQGCRPKDKNVSRKSIFK 67

Query: 62 RISNFSTCSNLSLVLLWVIMIILIYYIKSTSREHTR 97
                    +  ++ W+++  LI  I++   E+ R
Sbjct: 68 L-------RKIFTIVGWLVISYLISNIRTLKIEYRR 96

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.96
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.84

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.4e-31  Score=200.78  Aligned_cols=108  Identities=24%  Similarity=0.446  Sum_probs=87.1

Q ss_pred             CCccccCCCchhHHHHHHHhhhhhhhhHHhhhcccccccccccccCccchhhHHHHHHHhhhhcCcchhHHHHHHHHHHH
Q 033409            1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVI   80 (120)
Q Consensus         1 ~~~YDE~g~tfpyFvLt~l~lvLIP~T~~~l~~~~~~~~~~~~c~c~~c~~~~~~i~~~~kr~~~~~~~~~l~lv~GW~l   80 (120)
                      |.||||+|+|||||+||+++++|+|+||.+|++...+.....+|||.+|+..+...++..+ + .++..+++++++||++
T Consensus         4 ~~eYDE~g~tf~yflls~~~~i~~P~Ty~~i~~~~~~~~~~~~c~c~~c~~~r~~~~~~~~-k-~~~~~~~i~lv~~W~v   81 (230)
T KOG0721|consen    4 DYEYDESGNTFPYFLLSFLAIILLPMTYLLIPRNPEPPKRKEECQCHGCDKKRRKKAKVSP-K-SISTKRKVFLVVGWAV   81 (230)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHhhhhhhhhhhhhcccCc-c-cchhHHHHHHHHHHHH
Confidence            5799999999999999999999999999999853222222458999999987754333322 2 3333399999999999


Q ss_pred             HHHHHHHHHhcccccCccchhhHhHhhhhh
Q 033409           81 MIILIYYIKSTSREHTRFGTWGLRFRYKES  110 (120)
Q Consensus        81 ~~~L~y~i~~~~~~~~~fDPYeIL~~~~~~  110 (120)
                      +++|+|+|++.+++.+.|||||||++...+
T Consensus        82 ~~fL~y~i~~~~~~~~~fDPyEILGl~pga  111 (230)
T KOG0721|consen   82 IAFLIYKIMNSRRERQKFDPYEILGLDPGA  111 (230)
T ss_pred             HHHHHHHHhhhhHHhhcCCcHHhhCCCCCC
Confidence            999999999999888999999999997643

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.84  E-value=1.5e-21  Score=162.46  Aligned_cols=103  Identities=18%  Similarity=0.322  Sum_probs=81.1

Q ss_pred             ccccCCCchhHHHHHHHhhhhhhhhHHhhhcccccc-cccccccCccchhhHHHHHHHhhhhcCcchhHHHHHHHHHHHH
Q 033409            3 ATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKK-IKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIM   81 (120)
Q Consensus         3 ~YDE~g~tfpyFvLt~l~lvLIP~T~~~l~~~~~~~-~~~~~c~c~~c~~~~~~i~~~~kr~~~~~~~~~l~lv~GW~l~   81 (120)
                      ||||+|.+||||+|+.+.++..|+||..+-+....+ ....+|.|+.|..+.++  .+||  + +.++|++++++||+++
T Consensus         6 eYDE~g~~~p~fvL~gl~~vvlpmTY~~i~gpsaSKe~~~vr~~~q~~Rpkdkn--v~rK--S-If~lR~If~ivgWl~i   80 (610)
T COG5407           6 EYDESGLASPYFVLSGLVPVVLPMTYDLIEGPSASKELRRVRCACQGCRPKDKN--VSRK--S-IFKLRKIFTIVGWLVI   80 (610)
T ss_pred             ccccccccchHHHHhhhhheeeeeehhheeCCcccchhhcchhhhhhcCccccc--hhhh--H-HHhhhHHHHHHHHHHH
Confidence            899999999999999999999999998875553222 22557888888754432  2222  3 2224999999999999


Q ss_pred             HHHHHHHHhccccc-CccchhhHhHhhhhh
Q 033409           82 IILIYYIKSTSREH-TRFGTWGLRFRYKES  110 (120)
Q Consensus        82 ~~L~y~i~~~~~~~-~~fDPYeIL~~~~~~  110 (120)
                      ++|.|+|.+.+.+. +.|||||||+|.+..
T Consensus        81 ~~L~~~I~~~k~~~~~~fDPyEILGI~~~t  110 (610)
T COG5407          81 SYLISNIRTLKIEYRRGFDPYEILGIDQDT  110 (610)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHhhcccCCC
Confidence            99999999877776 899999999998753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	120
2lif_A	27	Core protein P21; signal peptide, E1 envelope prot	83.63

>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}

Probab=83.63  E-value=0.24  Score=25.62  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=17.7

Q ss_pred             CCchhHHHHHHHhhhhhhhh
Q 033409            8 SQLFPIFILTIMALPLVPYT   27 (120)
Q Consensus         8 g~tfpyFvLt~l~lvLIP~T   27 (120)
                      |--|+.|+|+++++.++|..
T Consensus         3 gcsfsiFlLaLlscLt~Pas   22 (27)
T 2lif_A            3 GFPFSIFLLALLSCITVPVS   22 (27)
Confidence            55789999999999999975

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00