Citrus Sinensis ID: 033417

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPNQF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
malwmdaesepkteseKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQnvlsdsensVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILcsgshpnqf
Flexible Loop (DISEMBL)
malwmdaesepktesekaDLDAIAALKESAAIelkekgneyvkkgKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCsgshpnqf
Low Complexity Region (SEG)
MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPNQF
Disordered region (IsUnstruct)
*************************************GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCS*******
Disordered Region (DISOPRED)
MALWM*****************************KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP***
Disordered Region (DISEMBL)
******************DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPNQF
Disordered Region (DISPRO)
********SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPNQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
P53043	513	Serine/threonine-protein	yes	no	0.638	0.148	0.402	6e-09
Q5EA11	388	Tetratricopeptide repeat	yes	no	0.722	0.221	0.363	4e-08
O95801	387	Tetratricopeptide repeat	yes	no	0.899	0.276	0.336	4e-08
Q28IV3	657	RNA polymerase II-associa	no	no	0.714	0.129	0.413	6e-07
P33313	385	Hsp70/Hsp90 co-chaperone	no	no	0.756	0.233	0.371	1e-06
Q6NU95	660	RNA polymerase II-associa	N/A	no	0.739	0.133	0.4	1e-06
Q54M20	397	Tetratricopeptide repeat	yes	no	0.663	0.198	0.329	2e-06
Q8R3H9	386	Tetratricopeptide repeat	yes	no	0.722	0.222	0.352	3e-06
Q9D706	660	RNA polymerase II-associa	no	no	0.731	0.131	0.361	9e-06
Q96EQ0	304	Small glutamine-rich tetr	no	no	0.537	0.210	0.4	1e-05

>sp|P53043|PPT1_YEAST Serine/threonine-protein phosphatase T OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PPT1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 25  ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84
           A   + A+E K +GN +VK+  KH+  AI+ YT AI+     DS  S+ ++NRA  +  +
Sbjct: 6   AADRAKALERKNEGNVFVKE--KHFLKAIEKYTEAIDL----DSTQSIYFSNRAFAHFKV 59

Query: 85  GNYRRALTDTEEALKLCPTNVK 106
            N++ AL D +EA+KL P N+K
Sbjct: 60  DNFQSALNDCDEAIKLDPKNIK 81

Protein phosphatase that specifically binds to and dephosphorylates the molecular chaperone Hsp90 (HSC82 and HSP82). Dephosphorylation positively regulates the Hsp90 chaperone machinery.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q5EA11|TTC4_BOVIN Tetratricopeptide repeat protein 4 OS=Bos taurus GN=TTC4 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
           E  A   K++GN+Y K+  K Y  A+  YT  + +       N+VLY NRA     LGN+
Sbjct: 76  EDQARTYKDEGNDYFKE--KDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNF 133

Query: 88  RRALTDTEEALKLCPTNVKVVILCSGSH 115
           R +L D   A KL P ++K +I  +  H
Sbjct: 134 RSSLNDVTAARKLKPCHLKAIIRGASCH 161

Bos taurus (taxid: 9913)

>sp|O95801|TTC4_HUMAN Tetratricopeptide repeat protein 4 OS=Homo sapiens GN=TTC4 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 7   AESEPKTESEKADLDAIAALKESAAIE----LKEKGNEYVKKGKKHYYDAIDCYTRAINQ 62
           +E +P+   + A L +I   +E +  E     K++GN+Y K+  K Y  A+  YT  + +
Sbjct: 51  SEIDPRENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKE--KDYKKAVISYTEGLKK 108

Query: 63  NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH 115
                  N+VLY NRA     LGN+R AL D   A KL P ++K +I  +  H
Sbjct: 109 KCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRGALCH 161

Homo sapiens (taxid: 9606)

>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 9   SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS 68
           +E  +ESE  D D I    E A +E KEKGN Y K G   Y +AI+CYTR ++    +D 
Sbjct: 111 NESSSESECGDEDGITVDTEKALLE-KEKGNNYFKSG--QYDEAIECYTRGMD----ADP 163

Query: 69  ENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100
            N+VL  NRA     L  Y  A +D   A+ L
Sbjct: 164 YNAVLPTNRASAFFRLKKYAVAESDCNLAIAL 195

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus tropicalis (taxid: 8364)

>sp|P33313|CNS1_YEAST Hsp70/Hsp90 co-chaperone CNS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CNS1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 15  SEKADLDAIAAL-----KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE 69
            E  +L+A+ AL         A   K++GNE  K   K + DA + Y++ +       S 
Sbjct: 62  GENVELEALKALAYEGEPHEIAENFKKQGNELYKA--KRFKDARELYSKGLAVECEDKSI 119

Query: 70  NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           N  LYANRA   L L NYRR + D  +AL + P NVK
Sbjct: 120 NESLYANRAACELELKNYRRCIEDCSKALTINPKNVK 156

Co-chaperone that binds to the molecular chaperones Hsp90 (HSC82 and HSP82) and Hsp70 (SSA1). Stimulates SSA1 ATPase activity, but not Hsp90 ATPase activity. Involved in only a subset of Hsp90 functions.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 6   DAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL 65
           D  +E  ++SE  D DAI    E A  E KEKGN Y K GK  Y +AI+CYTR ++    
Sbjct: 108 DNSNETSSDSECGDEDAITVDTEKALSE-KEKGNNYFKSGK--YDEAIECYTRGMD---- 160

Query: 66  SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100
           +D  N++L  NRA     L  +  A +D   A+ L
Sbjct: 161 ADPYNAILPTNRASAFFRLKKFAVAESDCNLAIAL 195

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus laevis (taxid: 8355)

>sp|Q54M20|TTC4_DICDI Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum GN=ttc4 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
           E  A   K  GN+Y ++GK  + DA+  Y +A++      ++NS+  +NRA +N+ LGNY
Sbjct: 87  EERAETFKNLGNDYFREGKSRFNDALYYYNKALSVKCNDMTKNSIYLSNRAAINMELGNY 146

Query: 88  RRALTDTEEALKLCPTNVK 106
              + D   +++  P N+K
Sbjct: 147 GLVIKDCTVSVEFNPLNMK 165

Dictyostelium discoideum (taxid: 44689)

>sp|Q8R3H9|TTC4_MOUSE Tetratricopeptide repeat protein 4 OS=Mus musculus GN=Ttc4 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
           E  A   K++GN+Y K+  K Y  A+  Y+  + +       N+VLY NRA     LGN 
Sbjct: 76  EEQAKTYKDEGNDYFKE--KDYKKAVLSYSEGLKKKCADPDLNAVLYTNRAAAQYYLGNV 133

Query: 88  RRALTDTEEALKLCPTNVKVVILCSGSH 115
           R +L D   A KL P ++K +I  +  H
Sbjct: 134 RSSLNDVLAAKKLKPGHLKAIIRGALCH 161

Mus musculus (taxid: 10090)

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 13  TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           ++  ++D D I    + A + LKEKGN+Y K+GK  Y +AI+CYT+ ++    +D  N V
Sbjct: 117 SQESESDEDGIRVDSQKALV-LKEKGNKYFKQGK--YDEAIECYTKGMD----ADPYNPV 169

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           L  NRA     L  +  A +D   A+ L  T  K
Sbjct: 170 LPTNRASAYFRLKKFAVAESDCNLAIALSRTYTK 203

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Mus musculus (taxid: 10090)

>sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 6/70 (8%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A +LK++GN ++K+  ++Y  A+DCYT+AI      D  N+V Y NRA     LG+Y  A
Sbjct: 85  ADQLKDEGNNHMKE--ENYAAAVDCYTQAIEL----DPNNAVYYCNRAAAQSKLGHYTDA 138

Query: 91  LTDTEEALKL 100
           + D E+A+ +
Sbjct: 139 IKDCEKAIAI 148

Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
224070033	370	predicted protein [Populus trichocarpa]	0.907	0.291	0.796	2e-44
225437945	364	PREDICTED: tetratricopeptide repeat prot	0.890	0.291	0.811	1e-43
356537202	360	PREDICTED: tetratricopeptide repeat prot	0.941	0.311	0.767	2e-43
449509065	309	PREDICTED: tetratricopeptide repeat prot	0.907	0.349	0.768	1e-42
255575041	299	heat shock protein 70 (HSP70)-interactin	0.907	0.361	0.777	1e-42
449468596	360	PREDICTED: tetratricopeptide repeat prot	0.907	0.3	0.768	2e-42
297843222	360	binding protein [Arabidopsis lyrata subs	0.907	0.3	0.75	5e-42
255634538	230	unknown [Glycine max]	0.907	0.469	0.768	6e-42
356545912	360	PREDICTED: tetratricopeptide repeat prot	0.907	0.3	0.768	1e-41
3142297	427	Contains similarity to serine/threonine	0.915	0.255	0.724	1e-40

>gi|224070033|ref|XP_002303105.1| predicted protein [Populus trichocarpa] gi|222844831|gb|EEE82378.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 98/108 (90%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWM+A SEPKTESE ADL AI+ALK S A+ELKEKGNEYVK GKKHY DAI+CYTRAI
Sbjct: 1   MALWMEAGSEPKTESEIADLQAISALKHSTALELKEKGNEYVKMGKKHYSDAIECYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
           NQ+ LSDS+NS++Y+NRAHVNLLLGNYRRALTD +EA+KLCPTNVK +
Sbjct: 61  NQDALSDSDNSIVYSNRAHVNLLLGNYRRALTDAQEAIKLCPTNVKAM 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437945|ref|XP_002269637.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Vitis vinifera] gi|297744240|emb|CBI37210.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 94/106 (88%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWM+  SEP T+SE ADLDAI ALKESAA+ELKEKGN+YVK GKKHY DAIDCYT+AI
Sbjct: 1   MALWMETGSEPNTQSEIADLDAITALKESAALELKEKGNQYVKLGKKHYADAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           NQ  LSD ENSV+YANRAHVNLLLGNYRRAL D +EA+KLCPTNVK
Sbjct: 61  NQKALSDPENSVIYANRAHVNLLLGNYRRALMDAQEAIKLCPTNVK 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537202|ref|XP_003537118.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Glycine max]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 96/112 (85%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWM+  SEP TESEKADL+AIAALKESAA E KEKGN+YVK GKKHY DAIDCYTRAI
Sbjct: 1   MALWMEKGSEPLTESEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCS 112
           +Q  LSDSE S+L+ANRAHVNLLLGN RRALTD+ EALKLCP+N+K +   S
Sbjct: 61  DQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRAS 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509065|ref|XP_004163482.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Cucumis sativus]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 95/108 (87%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWM+  S P TE+EKADLDAIAALKES+A+E KEKGNE+V+ G+KHY DAIDCYT+AI
Sbjct: 1   MALWMEDGSNPLTENEKADLDAIAALKESSALEFKEKGNEFVRLGRKHYTDAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
           NQ  LS+SENSVLYANRAHVNLLLGNYRRAL D EEA+ LCPTN+K +
Sbjct: 61  NQKALSNSENSVLYANRAHVNLLLGNYRRALNDAEEAINLCPTNIKAI 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575041|ref|XP_002528426.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223532162|gb|EEF33968.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 98/108 (90%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALW++A SEP TESE ADL+AI A+KESAA+ELKE+GN+YVK GKKHY +AIDCYTRAI
Sbjct: 1   MALWLEAGSEPTTESEIADLEAINAIKESAALELKEQGNKYVKMGKKHYSNAIDCYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
           NQ VLSDSENS++Y+NRAHVNLLLGNYRRAL+D EEA+KLC TNVK +
Sbjct: 61  NQKVLSDSENSMIYSNRAHVNLLLGNYRRALSDAEEAIKLCATNVKAL 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468596|ref|XP_004152007.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Cucumis sativus]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 95/108 (87%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWM+  S P TE+EKADLDAIAALKES+A+E KEKGNE+V+ G+KHY DAIDCYT+AI
Sbjct: 1   MALWMEDGSNPLTENEKADLDAIAALKESSALEFKEKGNEFVRLGRKHYTDAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
           NQ  LS+SENSVLYANRAHVNLLLGNYRRAL D EEA+ LCPTN+K +
Sbjct: 61  NQKALSNSENSVLYANRAHVNLLLGNYRRALNDAEEAINLCPTNIKAI 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843222|ref|XP_002889492.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335334|gb|EFH65751.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/108 (75%), Positives = 97/108 (89%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWMDA + P TE+EKADL+AI+ALKESAAIE KE+GN+ V+KGKKHY +AIDCYT+AI
Sbjct: 1   MALWMDAGATPITENEKADLEAISALKESAAIEFKEQGNDCVRKGKKHYSEAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
           NQ VLSDSE S+L++NR+HVNLLLGNYRRALTD EE+++LCP NVK V
Sbjct: 61  NQGVLSDSETSILFSNRSHVNLLLGNYRRALTDAEESMRLCPHNVKAV 108

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634538|gb|ACU17632.1| unknown [Glycine max]

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 94/108 (87%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWM+  SEP TE+EKADL+AIAALKESAA E KEKGN+YVK GKKHY DAID YTRAI
Sbjct: 1   MALWMEKGSEPLTETEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDYYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
           +Q  LSDSE S+L+ANRAHVNLLLGN RRALTD+ EALKLCP+N+K +
Sbjct: 61  DQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAI 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545912|ref|XP_003541377.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Glycine max]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 94/108 (87%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWM+  SEP TE+EKADL+AIAALKESAA E KEKGN+YVK GKKHY DAID YTRAI
Sbjct: 1   MALWMEKGSEPLTETEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDYYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
           +Q  LSDSE S+L+ANRAHVNLLLGN RRALTD+ EALKLCP+N+K +
Sbjct: 61  DQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAI 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3142297|gb|AAC16748.1| Contains similarity to serine/threonine protein phosphatase gb|X83099 from S. cerevisiae [Arabidopsis thaliana]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 95/109 (87%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
           MALWMDA + P TE EKADL+AI+ALKES AIE KE+GNE V+KGKKHY +AIDCYT+AI
Sbjct: 1   MALWMDAGATPTTEKEKADLEAISALKESTAIEFKEEGNECVRKGKKHYSEAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109
           +Q VLSDSE S+L++NR+HVNLLLGNYRRALTD EE+++L P NVKV +
Sbjct: 61  SQGVLSDSETSILFSNRSHVNLLLGNYRRALTDAEESMRLSPHNVKVAV 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2020225	360	TPR2 "tetratricopeptide repeat	0.907	0.3	0.731	6.1e-39
SGD|S000003355	513	PPT1 "Protein serine/threonine	0.638	0.148	0.402	1.8e-09
ZFIN|ZDB-GENE-040426-1021	402	ttc4 "tetratricopeptide repeat	0.672	0.199	0.414	2e-09
CGD|CAL0005143	390	CNS1 [Candida albicans (taxid:	0.747	0.228	0.385	1.8e-08
UNIPROTKB|Q5ABB8	390	CNS1 "Putative uncharacterized	0.747	0.228	0.385	1.8e-08
DICTYBASE|DDB_G0286253	397	ttc4 "tetratricopeptide repeat	0.815	0.244	0.292	3.9e-08
ZFIN|ZDB-GENE-040704-72	320	sgta "small glutamine-rich tet	0.588	0.218	0.394	4.1e-08
SGD|S000000359	385	CNS1 "TPR-containing co-chaper	0.747	0.231	0.385	4.7e-08
UNIPROTKB|E2RJK8	309	TOMM34 "Uncharacterized protei	0.773	0.297	0.386	6.3e-08
UNIPROTKB|Q3ZBZ8	543	STIP1 "Stress-induced-phosphop	0.731	0.160	0.357	7.8e-08

TAIR|locus:2020225 TPR2 "tetratricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 79/108 (73%), Positives = 94/108 (87%)

Query:     1 MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAI 60
             MALWMDA + P TE EKADL+AI+ALKES AIE KE+GNE V+KGKKHY +AIDCYT+AI
Sbjct:     1 MALWMDAGATPTTEKEKADLEAISALKESTAIEFKEEGNECVRKGKKHYSEAIDCYTKAI 60

Query:    61 NQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
             +Q VLSDSE S+L++NR+HVNLLLGNYRRALTD EE+++L P NVK V
Sbjct:    61 SQGVLSDSETSILFSNRSHVNLLLGNYRRALTDAEESMRLSPHNVKAV 108

GO:0005737 "cytoplasm" evidence=ISM

GO:0051879 "Hsp90 protein binding" evidence=IPI

SGD|S000003355 PPT1 "Protein serine/threonine phosphatase, regulates Hsp90 chaperone by af" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 147 (56.8 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query:    25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84
             A   + A+E K +GN +VK+  KH+  AI+ YT AI+     DS  S+ ++NRA  +  +
Sbjct:     6 AADRAKALERKNEGNVFVKE--KHFLKAIEKYTEAIDL----DSTQSIYFSNRAFAHFKV 59

Query:    85 GNYRRALTDTEEALKLCPTNVK 106
              N++ AL D +EA+KL P N+K
Sbjct:    60 DNFQSALNDCDEAIKLDPKNIK 81

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA;ISS;IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS;IDA

ZFIN|ZDB-GENE-040426-1021 ttc4 "tetratricopeptide repeat domain 4" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 34/82 (41%), Positives = 46/82 (56%)

Query:    28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
             E  A  LK++GNEY K+  K Y  A+  YT  +  + ++   N+VLY NRA  +  LGN 
Sbjct:    76 EEKARSLKDEGNEYFKE--KKYKKAVVSYTEGLKTSCVNPELNAVLYTNRAAAHFHLGNM 133

Query:    88 RRALTDTEEALKLCPTNVKVVI 109
             R AL D   A KL P + K +I
Sbjct:   134 RSALNDATAAKKLKPDHNKAII 155

GO:0003779 "actin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0005143 CNS1 [Candida albicans (taxid:5476)]

 Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 37/96 (38%), Positives = 50/96 (52%)

Query:    16 EKADLDAIAALK-----ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN 70
             E  +L+A+ +L      +  A   K +GN   K   K Y DAI  YT+ +  N   D+ N
Sbjct:    70 ENVNLEALKSLAYEGDPDEIASNFKNQGNNCYKF--KKYKDAIIFYTKGLEVNCDVDAIN 127

Query:    71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
             S LY NRA  NL L NYRR + D ++ L L   N+K
Sbjct:   128 SALYLNRAACNLELKNYRRCIEDCKKVLMLDEKNIK 163

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

UNIPROTKB|Q5ABB8 CNS1 "Putative uncharacterized protein CNS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 37/96 (38%), Positives = 50/96 (52%)

Query:    16 EKADLDAIAALK-----ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN 70
             E  +L+A+ +L      +  A   K +GN   K   K Y DAI  YT+ +  N   D+ N
Sbjct:    70 ENVNLEALKSLAYEGDPDEIASNFKNQGNNCYKF--KKYKDAIIFYTKGLEVNCDVDAIN 127

Query:    71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
             S LY NRA  NL L NYRR + D ++ L L   N+K
Sbjct:   128 SALYLNRAACNLELKNYRRCIEDCKKVLMLDEKNIK 163

GO:0035690 "cellular response to drug" evidence=IMP

DICTYBASE|DDB_G0286253 ttc4 "tetratricopeptide repeat domain 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 29/99 (29%), Positives = 52/99 (52%)

Query:    10 EPKTESEKADLDAIA--ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD 67
             EP +    A   +++     E  A   K  GN+Y ++GK  + DA+  Y +A++      
Sbjct:    67 EPSSNQYLAAFQSLSNDCTPEERAETFKNLGNDYFREGKSRFNDALYYYNKALSVKCNDM 126

Query:    68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
             ++NS+  +NRA +N+ LGNY   + D   +++  P N+K
Sbjct:   127 TKNSIYLSNRAAINMELGNYGLVIKDCTVSVEFNPLNMK 165

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040704-72 sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Danio rerio (taxid:7955)]

 Score = 131 (51.2 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 30/76 (39%), Positives = 45/76 (59%)

Query:    31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
             A +LK +GN ++K+  ++Y  A+DCYT+AI      D  N+V Y NRA  +  L NY  A
Sbjct:   101 AEQLKNEGNNHMKE--ENYSSAVDCYTKAIEL----DQRNAVYYCNRAAAHSKLENYTEA 154

Query:    91 LTDTEEALKLCPTNVK 106
             + D E A+ + P+  K
Sbjct:   155 MGDCERAIAIDPSYSK 170

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000000359 CNS1 "TPR-containing co-chaperone" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 132 (51.5 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 37/96 (38%), Positives = 51/96 (53%)

Query:    16 EKADLDAIAALK-ESAAIEL----KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN 70
             E  +L+A+ AL  E    E+    K++GNE  K   K + DA + Y++ +       S N
Sbjct:    63 ENVELEALKALAYEGEPHEIAENFKKQGNELYKA--KRFKDARELYSKGLAVECEDKSIN 120

Query:    71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
               LYANRA   L L NYRR + D  +AL + P NVK
Sbjct:   121 ESLYANRAACELELKNYRRCIEDCSKALTINPKNVK 156

GO:0006457 "protein folding" evidence=IGI;IPI

GO:0005737 "cytoplasm" evidence=IEA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

UNIPROTKB|E2RJK8 TOMM34 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 129 (50.5 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 39/101 (38%), Positives = 61/101 (60%)

Query:     7 AESEPK-TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL 65
             A+S+ K T + K  + +   ++ + A  LKE+GNE VKKG  ++  AI+ Y+ +++    
Sbjct:   170 AKSKFKETTTAKTTVPSAGDVERARA--LKEEGNELVKKG--NHKKAIEKYSESLS---F 222

Query:    66 SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
             SD E S  Y+NRA  +L+L  Y+ A+ D  EAL+L   NVK
Sbjct:   223 SDME-SATYSNRALCHLVLKQYKEAVKDCTEALRLDGKNVK 262

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|Q3ZBZ8 STIP1 "Stress-induced-phosphoprotein 1" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
 Identities = 34/95 (35%), Positives = 53/95 (55%)

Query:    14 ESEKA--DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS 71
             ++EK   + + +A +    A+E K KGNE  +KG   Y  A+  YT AI +N     +++
Sbjct:   341 QAEKILKEQERLAYINPDLALEEKNKGNECFQKGD--YPQAMKHYTEAIKRN----PKDA 394

Query:    72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
              LY+NRA     L  ++ AL D EE ++L PT +K
Sbjct:   395 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 429

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	6e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 51.6 bits (124), Expect = 7e-10
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 33  ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92
            L   GN Y K G   Y +A++ Y +A+      D +N+  Y N A     LG Y  AL 
Sbjct: 2   ALLNLGNLYYKLGD--YDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALE 55

Query: 93  DTEEALKLCPTNVKV 107
           D E+AL+L P N K 
Sbjct: 56  DYEKALELDPDNAKA 70

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 2e-08
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRR 89
           A  LK  GN   K G   Y +AI+ Y +A+      D +N+  Y N A   L LG +Y  
Sbjct: 3   AEALKNLGNALFKLGD--YDEAIEAYEKALEL----DPDNAEAYYNLALAYLKLGKDYEE 56

Query: 90  ALTDTEEALKLCP 102
           AL D E+AL+L P
Sbjct: 57  ALEDLEKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 11/103 (10%)

Query: 10  EPKTESEKADLDAIAALKESA----AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL 65
           EP  E  + D  ++A L E      A +LKEKGN+      K +  AI  Y++AI     
Sbjct: 102 EPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAY--RNKDFNKAIKLYSKAIECK-- 157

Query: 66  SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV 108
               + V Y+NRA  +  LG++ + + DT  AL+L P   K +
Sbjct: 158 ---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL 197

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 16/91 (17%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +A+   ++  A+EL              Y K GK  Y +A++ Y +A+  +     +N+ 
Sbjct: 18  EALEYYEK--ALELDPDNADAYYNLAAAYYKLGK--YEEALEDYEKALELD----PDNAK 69

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPT 103
            Y N       LG Y  AL   E+AL+L P 
Sbjct: 70  AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 39  NEYVKKGKKHYYD-----AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93
            +   K K+ + D     A+D YT+AI      D  N+ LYA+RA  N+ LGN+  A+ D
Sbjct: 3   KDLEDKAKEAFVDDDFALAVDLYTQAI----DLDPNNAELYADRAQANIKLGNFTEAVAD 58

Query: 94  TEEALKLCPTNVK 106
             +A++L P+  K
Sbjct: 59  ANKAIELDPSLAK 71

Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG0553	304	consensus TPR repeat-containing protein [General f	99.73
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.68
PRK15359	144	type III secretion system chaperone protein SscB;	99.65
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.64
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.63
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.54
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
KOG4234	271	consensus TPR repeat-containing protein [General f	99.51
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.49
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.48
KOG0553	304	consensus TPR repeat-containing protein [General f	99.48
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.47
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.46
PRK11189	296	lipoprotein NlpI; Provisional	99.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.44
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.41
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.4
PRK11189	296	lipoprotein NlpI; Provisional	99.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.38
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.38
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.37
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.37
PRK12370	553	invasion protein regulator; Provisional	99.36
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.32
PF13371	73	TPR_9: Tetratricopeptide repeat	99.31
PRK12370	553	invasion protein regulator; Provisional	99.3
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.29
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.28
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.28
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.25
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.23
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.23
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.22
KOG1125	579	consensus TPR repeat-containing protein [General f	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.21
KOG1126	638	consensus DNA-binding cell division cycle control	99.2
PLN02789	320	farnesyltranstransferase	99.2
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.2
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.19
PLN02789	320	farnesyltranstransferase	99.19
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.17
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.16
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.15
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.15
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.12
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
KOG1126	638	consensus DNA-binding cell division cycle control	99.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.08
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.06
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.04
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.03
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.03
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.02
PRK15331	165	chaperone protein SicA; Provisional	99.01
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.01
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.0
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.98
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.98
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.96
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.94
PRK10803	263	tol-pal system protein YbgF; Provisional	98.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.93
KOG1125	579	consensus TPR repeat-containing protein [General f	98.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.91
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.89
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.88
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.88
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.85
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.85
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.81
PF13428	44	TPR_14: Tetratricopeptide repeat	98.81
PRK15331	165	chaperone protein SicA; Provisional	98.81
PF13512	142	TPR_18: Tetratricopeptide repeat	98.81
KOG2076	895	consensus RNA polymerase III transcription factor	98.78
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.77
KOG4234	271	consensus TPR repeat-containing protein [General f	98.77
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.74
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.71
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.7
KOG4555	175	consensus TPR repeat-containing protein [Function	98.69
PRK10803	263	tol-pal system protein YbgF; Provisional	98.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.67
PRK11906	458	transcriptional regulator; Provisional	98.64
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.63
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.6
KOG2076	895	consensus RNA polymerase III transcription factor	98.58
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.57
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.56
PF12688	120	TPR_5: Tetratrico peptide repeat	98.55
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.55
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.55
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.55
PRK14574	822	hmsH outer membrane protein; Provisional	98.53
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.51
KOG2003	840	consensus TPR repeat-containing protein [General f	98.5
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.49
PRK11906	458	transcriptional regulator; Provisional	98.47
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.47
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.45
PF13431	34	TPR_17: Tetratricopeptide repeat	98.44
PF13371	73	TPR_9: Tetratricopeptide repeat	98.42
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.42
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.4
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.38
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.38
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.36
PF13512	142	TPR_18: Tetratricopeptide repeat	98.36
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.34
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.31
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.31
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.3
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.27
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.23
PF13428	44	TPR_14: Tetratricopeptide repeat	98.23
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.23
PRK14574	822	hmsH outer membrane protein; Provisional	98.21
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.21
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.2
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.19
KOG4555	175	consensus TPR repeat-containing protein [Function	98.19
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.19
PF12688	120	TPR_5: Tetratrico peptide repeat	98.17
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.17
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.15
KOG1129	478	consensus TPR repeat-containing protein [General f	98.14
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.14
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.14
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.13
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.1
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.1
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.09
KOG1129	478	consensus TPR repeat-containing protein [General f	98.05
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.03
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.02
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.01
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.99
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.99
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.99
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.98
KOG1310	758	consensus WD40 repeat protein [General function pr	97.96
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.96
PRK10941	269	hypothetical protein; Provisional	97.94
KOG2003	840	consensus TPR repeat-containing protein [General f	97.94
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.94
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.93
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.91
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.91
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.85
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.81
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.78
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.77
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.68
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.56
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.47
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.46
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.45
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.44
PF13431	34	TPR_17: Tetratricopeptide repeat	97.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.39
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.31
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.29
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.28
KOG3364	149	consensus Membrane protein involved in organellar	97.27
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.26
KOG2471	696	consensus TPR repeat-containing protein [General f	97.25
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.25
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.19
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.18
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.18
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.16
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.13
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.11
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.04
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.03
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.03
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.02
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.97
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.96
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.95
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.89
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.88
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.88
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.86
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.85
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.76
COG2912	269	Uncharacterized conserved protein [Function unknow	96.68
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.66
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.65
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.54
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.28
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.19
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.19
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.07
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.05
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.9
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.86
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.69
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.61
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.61
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.58
PLN03077	857	Protein ECB2; Provisional	95.51
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.35
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.27
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.26
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.23
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.22
PRK10941	269	hypothetical protein; Provisional	95.2
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.18
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.18
KOG1310	758	consensus WD40 repeat protein [General function pr	95.13
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.08
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.07
PLN03218	1060	maturation of RBCL 1; Provisional	95.05
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.97
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.9
PLN03218	1060	maturation of RBCL 1; Provisional	94.78
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.74
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.64
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.54
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.53
PRK04841	903	transcriptional regulator MalT; Provisional	94.52
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.42
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.17
PRK04841	903	transcriptional regulator MalT; Provisional	94.04
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	94.04
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.0
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.99
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	93.97
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	93.96
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.9
PLN03077	857	Protein ECB2; Provisional	93.72
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.7
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.56
KOG1586	288	consensus Protein required for fusion of vesicles	93.47
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.44
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	93.18
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	93.08
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	92.9
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.89
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.8
KOG1585	308	consensus Protein required for fusion of vesicles	92.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	92.65
KOG1586	288	consensus Protein required for fusion of vesicles	91.93
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.93
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.8
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	91.61
KOG3783	546	consensus Uncharacterized conserved protein [Funct	91.59
PF04212	69	MIT: MIT (microtubule interacting and transport) d	91.31
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.06
COG2912	269	Uncharacterized conserved protein [Function unknow	90.9
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.51
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.22
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.02
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.0
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	89.94
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	89.85
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.82
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.69
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.59
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.54
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	89.47
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.45
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	89.33
COG3947	361	Response regulator containing CheY-like receiver a	88.67
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.37
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	88.26
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	88.25
KOG2047	835	consensus mRNA splicing factor [RNA processing and	87.8
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	87.69
KOG1550	552	consensus Extracellular protein SEL-1 and related	87.5
COG3898	531	Uncharacterized membrane-bound protein [Function u	86.61
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.53
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	86.28
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	86.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.08
KOG1585	308	consensus Protein required for fusion of vesicles	85.83
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	85.81
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.43
KOG4507	886	consensus Uncharacterized conserved protein, conta	85.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.25
COG3947	361	Response regulator containing CheY-like receiver a	85.19
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	85.11
KOG2758	432	consensus Translation initiation factor 3, subunit	84.91
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	84.23
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	83.95
KOG4814	872	consensus Uncharacterized conserved protein [Funct	83.61
PF12854	34	PPR_1: PPR repeat	83.14
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	82.54
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.15
KOG2047	835	consensus mRNA splicing factor [RNA processing and	82.09
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	81.88
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	81.74
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	81.7
KOG2471	696	consensus TPR repeat-containing protein [General f	81.49
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	81.27
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.23
cd02656	75	MIT MIT: domain contained within Microtubule Inter	80.43

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.73  E-value=2.4e-17  Score=114.16  Aligned_cols=85  Identities=35%  Similarity=0.444  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      -..++.++..|+.+++.+  +|.+|+..|++||.+    +|.++.+|.|||.+|.++|.++.|+.+|+.+|.+||.+.++
T Consensus        78 ~~~AE~LK~eGN~~m~~~--~Y~eAv~kY~~AI~l----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yska  151 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNK--DYQEAVDKYTEAIEL----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKA  151 (304)
T ss_pred             HHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHH
Confidence            346888999999999999  899999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCC
Q 033417          108 VILCSGSHPNQ  118 (119)
Q Consensus       108 ~~~~a~~~~~~  118 (119)
                      |-++|.+|+.+
T Consensus       152 y~RLG~A~~~~  162 (304)
T KOG0553|consen  152 YGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHcc
Confidence            99999998754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=4e-16  Score=114.61  Aligned_cols=97  Identities=36%  Similarity=0.522  Sum_probs=90.3

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++.++.+....++|+.+...+..|+.+|+.|  +|..|+..|+++|..    +|+++.+|.|||.||.++|++..|+.+
T Consensus       341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g--dy~~Av~~YteAIkr----~P~Da~lYsNRAac~~kL~~~~~aL~D  414 (539)
T KOG0548|consen  341 EKALKEAERKAYINPEKAEEEREKGNEAFKKG--DYPEAVKHYTEAIKR----DPEDARLYSNRAACYLKLGEYPEALKD  414 (539)
T ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence            34556666777789999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+.+++++|++.++|++.|.++.
T Consensus       415 a~~~ieL~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  415 AKKCIELDPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHH
Confidence            99999999999999999998864

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.68  E-value=1.2e-15  Score=97.29  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=71.5

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+..+..++|.+...+..+|.++...|  ++++|+..|.+++.+    +|.++.+++++|.|+..+|++++|+..
T Consensus        41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~y~~Al~l----~p~~~~a~~~lg~~l~~~g~~~eAi~~  114 (144)
T PRK15359         41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--EYTTAINFYGHALML----DASHPEPVYQTGVCLKMMGEPGLAREA  114 (144)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            34556677777777777777777777777777  777777777777777    777777777777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |++++.++|+++..+..+|.+.
T Consensus       115 ~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        115 FQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHhCCCChHHHHHHHHHH
Confidence            7777777777777777776553

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.65  E-value=5.1e-15  Score=94.44  Aligned_cols=91  Identities=14%  Similarity=0.086  Sum_probs=85.4

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..+++...++|+.   +...|..++..|  ++++|+..|.+++.+    +|.++.++.++|.++..+|++++|+..|+++
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A   84 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEG--DYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5788889999986   667899999999  899999999999999    9999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHhcccC
Q 033417           98 LKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~~  117 (119)
                      +.++|+++.+++++|.++..
T Consensus        85 l~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHH
Confidence            99999999999999998753

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=9.3e-16  Score=112.14  Aligned_cols=83  Identities=33%  Similarity=0.549  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      -+.+..+.++||.+|+.|  .|++||.+|++||++    +|+.+.+|.||+.||..+|+|++.+++|.++|+++|+++++
T Consensus       112 ~k~A~~lK~~GN~~f~~k--kY~eAIkyY~~AI~l----~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA  185 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNK--KYDEAIKYYTQAIEL----CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA  185 (606)
T ss_pred             HHHHHHHHhhhhhhhhcc--cHHHHHHHHHHHHhc----CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH
Confidence            446889999999999999  799999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc
Q 033417          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      ++|++.++-
T Consensus       186 l~RRA~A~E  194 (606)
T KOG0547|consen  186 LLRRASAHE  194 (606)
T ss_pred             HHHHHHHHH
Confidence            999998873

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.63  E-value=5.8e-15  Score=82.67  Aligned_cols=67  Identities=36%  Similarity=0.560  Sum_probs=64.6

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRALTDTEEALKLCP  102 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p  102 (119)
                      ++..|...|..++..|  +|++|+..|+++|++    +|+++.+++++|.|+..+| ++.+|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQG--DYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4778999999999999  999999999999999    9999999999999999999 79999999999999998

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.54  E-value=1.1e-13  Score=88.79  Aligned_cols=92  Identities=7%  Similarity=-0.057  Sum_probs=76.0

Q ss_pred             HHHHHHhc-HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           20 LDAIAALK-ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        20 ~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      +..+..+. ++..+.++..|..++..|  ++++|...|+....+    +|.++..|+++|.|+..+|+|.+||..|.+++
T Consensus        23 l~~l~~~~~~~~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         23 LRMLLDDDVTQPLNTLYRYAMQLMEVK--EFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHCCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34455567 778888888888888888  788888888888888    88888888888888888888888888888888


Q ss_pred             HhCCCcHHHHHHHHhcccC
Q 033417           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+++.+++..|.|++.
T Consensus        97 ~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             hcCCCCchHHHHHHHHHHH
Confidence            8888888888888888754

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=7.4e-14  Score=98.22  Aligned_cols=113  Identities=35%  Similarity=0.527  Sum_probs=91.5

Q ss_pred             cccCCCCCCCChh-hHHHHHHHHHh-----cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH
Q 033417            3 LWMDAESEPKTES-EKADLDAIAAL-----KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN   76 (119)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   76 (119)
                      +||.+.+.+..+. .+..++.+...     --+.+.-+.+.||.+|+..  +|..|+.+|+++|.....+...++.+|.|
T Consensus        47 fFMt~~p~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~K--ryk~A~~~Yt~Glk~kc~D~dlnavLY~N  124 (390)
T KOG0551|consen   47 FFMTRAPSEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEK--RYKDAVESYTEGLKKKCADPDLNAVLYTN  124 (390)
T ss_pred             HHHhcCCCCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhh--hHHHHHHHHHHHHhhcCCCccHHHHHHhh
Confidence            6777766654442 22333333332     1337888999999999987  89999999999999855545677899999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           77 RAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ||.|.+.+|+|..|+.+|.+++.++|++.+++++-|.|++.
T Consensus       125 RAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e  165 (390)
T KOG0551|consen  125 RAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE  165 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence            99999999999999999999999999999999999998753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=2.1e-13  Score=85.31  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .++.+...+|++.......|..++..|  ++++|+..+++++..    +|.++.++.++|.++..+|++.+|+..+++++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQG--RYDEALKLFQLLAAY----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666666666666666666666  666666666666666    66666666666666666666666666666666


Q ss_pred             HhCCCcHHHHHHHHhccc
Q 033417           99 KLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~  116 (119)
                      +++|+++..++.+|.++.
T Consensus        79 ~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        79 ALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             hcCCCChHHHHHHHHHHH
Confidence            666666666666666554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=9.5e-14  Score=92.19  Aligned_cols=87  Identities=31%  Similarity=0.425  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ..+..+...||.+|..|  +|.+|...|+.||+++|.. ......+|.|||.|.++++.++.||.+|.++|+++|.+.++
T Consensus        93 ~kad~lK~EGN~~F~ng--dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA  170 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNG--DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA  170 (271)
T ss_pred             HHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence            35778999999999999  9999999999999996653 22446799999999999999999999999999999999999


Q ss_pred             HHHHHhcccC
Q 033417          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      +.++|.+|-+
T Consensus       171 l~RRAeayek  180 (271)
T KOG4234|consen  171 LERRAEAYEK  180 (271)
T ss_pred             HHHHHHHHHh
Confidence            9999998854

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.49  E-value=4.7e-13  Score=96.65  Aligned_cols=97  Identities=16%  Similarity=0.215  Sum_probs=91.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+.++..++|.++..+..+|.+++..|  ++++|+..+++++.+    +|.++.+|+++|.+++.+|+|++|+.
T Consensus        18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g--~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~lg~~~eA~~   91 (356)
T PLN03088         18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG--NFTEAVADANKAIEL----DPSLAKAYLRKGTACMKLEEYQTAKA   91 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            356888999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .|+++++++|++..++..++.|.
T Consensus        92 ~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         92 ALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999998887763

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.48  E-value=7.5e-13  Score=73.27  Aligned_cols=65  Identities=28%  Similarity=0.400  Sum_probs=60.2

Q ss_pred             HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417           35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      +.+|..++..|  +|++|+..|++++..    .|.++.+++.+|.|+..+|++++|+..++++++++|+++
T Consensus         1 ~~~a~~~~~~g--~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQG--DYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCT--HHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999  999999999999999    999999999999999999999999999999999999875

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.48  E-value=4e-13  Score=93.35  Aligned_cols=94  Identities=23%  Similarity=0.280  Sum_probs=86.9

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .+++..+.++..++|+++..|.+++-+|.+.|  +|+.|+.....+|.+    +|....+|.++|.+|+.+|++++|+..
T Consensus        98 ~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg--~~~~AVkDce~Al~i----Dp~yskay~RLG~A~~~~gk~~~A~~a  171 (304)
T KOG0553|consen   98 QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG--EYEDAVKDCESALSI----DPHYSKAYGRLGLAYLALGKYEEAIEA  171 (304)
T ss_pred             HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc--chHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            35677888999999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHh
Q 033417           94 TEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~  113 (119)
                      |+++|+++|+|....-.+..
T Consensus       172 ykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  172 YKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             HHhhhccCCCcHHHHHHHHH
Confidence            99999999999866655543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.47  E-value=7.1e-13  Score=88.69  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=91.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH-HHhcC--HHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN-LLLGN--YRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~-~~l~~--~~~   89 (119)
                      .++.+..+......+|+++..|..+|..+...|  ++++|+..|++++.+    .|+++.++.+.|.++ ...|+  +++
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g--~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRN--DYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            456677889999999999999999999999999  999999999999999    999999999999985 67787  599


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           90 ALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+..++++++++|+++.+++.+|.+++.
T Consensus       129 A~~~l~~al~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370        129 TREMIDKALALDANEVTALMLLASDAFM  156 (198)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            9999999999999999999999988754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=2e-13  Score=98.38  Aligned_cols=89  Identities=36%  Similarity=0.552  Sum_probs=82.3

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .|+....+...|+..|+.|  +|..|.+.|+.+|.+.|.+...++.+|.|||.+..++|+..+|+++|++++.|+|.+.+
T Consensus       245 ~~k~le~~k~~gN~~fk~G--~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik  322 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNG--NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK  322 (486)
T ss_pred             hHHHHHHHHhhhhhHhhcc--chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence            3556778999999999999  89999999999999977766678899999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 033417          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      ++.++|.|++.
T Consensus       323 all~ra~c~l~  333 (486)
T KOG0550|consen  323 ALLRRANCHLA  333 (486)
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.44  E-value=2.6e-12  Score=90.62  Aligned_cols=96  Identities=21%  Similarity=0.118  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHH---hcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417           15 SEKADLDAIAA---LKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        15 ~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      ..+..+..+..   ++| ..+..+.++|..+...|  ++++|+..|++++.+    +|+++.+|+++|.++..+|++++|
T Consensus        44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            33444444443   233 33677888888888877  788888888888888    788888888888888888888888


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +..++++++++|++..+++++|.++.
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            88888888888888888888877654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.44  E-value=1e-12  Score=94.91  Aligned_cols=80  Identities=33%  Similarity=0.506  Sum_probs=75.8

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ..+...|..+|..|  +|++|+..|+++|.+    +|.++.+|+++|.+++.+|++++|+.+++++++++|+++.+|+++
T Consensus         3 ~~l~~~a~~a~~~~--~~~~Ai~~~~~Al~~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~l   76 (356)
T PLN03088          3 KDLEDKAKEAFVDD--DFALAVDLYTQAIDL----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK   76 (356)
T ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            34778899999999  999999999999999    999999999999999999999999999999999999999999999


Q ss_pred             HhcccC
Q 033417          112 SGSHPN  117 (119)
Q Consensus       112 a~~~~~  117 (119)
                      |.+++.
T Consensus        77 g~~~~~   82 (356)
T PLN03088         77 GTACMK   82 (356)
T ss_pred             HHHHHH
Confidence            998754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.41  E-value=2.4e-12  Score=98.52  Aligned_cols=95  Identities=19%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...++++..++|.....+...|.++...|  ++++|+..|++++++    +|+++.+++++|.+++.+|++++|+.+|
T Consensus       349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       349 EALADLSKSIELDPRVTQSYIKRASMNLELG--DPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4445555555555555555555555555555  555555555555555    5555666666666666666666666666


Q ss_pred             HHHHHhCCCcHHHHHHHHhcc
Q 033417           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++|++..+++.+|.++
T Consensus       423 ~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHH
Confidence            666666666666665555554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.3e-12  Score=92.67  Aligned_cols=86  Identities=29%  Similarity=0.302  Sum_probs=74.9

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---C--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---D--------SENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~--------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+....+.|+.+|+.|  +|..|+..|.+++......   +        .....++.|++.|++++++|.+|+..|.++|
T Consensus       207 ~A~~~ke~Gn~~fK~g--k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEG--KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHhhhHHHhhc--hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4777889999999999  8999999999999874321   1        1224589999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHhcccC
Q 033417           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+|++|+|++|++++.
T Consensus       285 e~~~~N~KALyRrG~A~l~  303 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLA  303 (397)
T ss_pred             hcCCCchhHHHHHHHHHHh
Confidence            9999999999999999864

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.39  E-value=6.7e-12  Score=88.56  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++..++|+++.++...|..+...|  ++++|+..|.+++++    +|++..++.++|.++...|++++|+.
T Consensus        80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~  153 (296)
T PRK11189         80 RALARNDFSQALALRPDMADAYNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQD  153 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            446778899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHH
Q 033417           93 DTEEALKLCPTNVK  106 (119)
Q Consensus        93 ~~~~al~l~p~~~~  106 (119)
                      +++++++++|+++.
T Consensus       154 ~~~~al~~~P~~~~  167 (296)
T PRK11189        154 DLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHhCCCCHH
Confidence            99999999999873

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.39  E-value=2.1e-12  Score=97.39  Aligned_cols=92  Identities=27%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ++.....+..++|..++++.++|+.+-..|  +.+.|+..|++||.+    +|..++++.|+|.+|-..|+..+||..|+
T Consensus       407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g--~v~~A~q~y~rAI~~----nPt~AeAhsNLasi~kDsGni~~AI~sY~  480 (966)
T KOG4626|consen  407 AIMCYKEALRIKPTFADALSNMGNTYKEMG--DVSAAIQCYTRAIQI----NPTFAEAHSNLASIYKDSGNIPEAIQSYR  480 (966)
T ss_pred             HHHHHHHHHhcCchHHHHHHhcchHHHHhh--hHHHHHHHHHHHHhc----CcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence            344444444445555555555555554444  445555555555555    45555555555555555555555555555


Q ss_pred             HHHHhCCCcHHHHHHHHh
Q 033417           96 EALKLCPTNVKVVILCSG  113 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~  113 (119)
                      .+|+++|++++++-+++.
T Consensus       481 ~aLklkPDfpdA~cNllh  498 (966)
T KOG4626|consen  481 TALKLKPDFPDAYCNLLH  498 (966)
T ss_pred             HHHccCCCCchhhhHHHH
Confidence            555555555555544443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.39  E-value=8.5e-12  Score=80.11  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=79.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -+++...+..+..++|.++..|+++|.++-..|  +|.+|+..|.+++.+    +|+++..+++.|.|++.+|+.+.|..
T Consensus        51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--~~~~AI~aY~~A~~L----~~ddp~~~~~ag~c~L~lG~~~~A~~  124 (157)
T PRK15363         51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--HWGEAIYAYGRAAQI----KIDAPQAPWAAAECYLACDNVCYAIK  124 (157)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            356778899999999999999999999999988  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 033417           93 DTEEALKLC  101 (119)
Q Consensus        93 ~~~~al~l~  101 (119)
                      .|+.++.+.
T Consensus       125 aF~~Ai~~~  133 (157)
T PRK15363        125 ALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHh
Confidence            999999986

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.38  E-value=3.6e-12  Score=96.14  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=75.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+...+.++....|..+.+..++|.++-++|  ++++|+.+|.++|++    +|..+.++.|+|..|-.+|+...|++
T Consensus       370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg--nl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~v~~A~q  443 (966)
T KOG4626|consen  370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQG--NLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGDVSAAIQ  443 (966)
T ss_pred             chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc--cHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhhHHHHHH
Confidence            345566677777777777777777777777777  678888888888888    78888888888888888888888888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +|.++|.++|...+++-++|.+|-
T Consensus       444 ~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  444 CYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             HHHHHHhcCcHHHHHHhhHHHHhh
Confidence            888888888888888877777663

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.38  E-value=1.4e-11  Score=77.00  Aligned_cols=90  Identities=21%  Similarity=0.211  Sum_probs=83.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++.+...+|.+...+...|..++..|  ++++|+..+.+++..    +|+++..++++|.++...|++++|+.
T Consensus        33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~  106 (135)
T TIGR02552        33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--EYEEAIDAYALAAAL----DPDDPRPYFHAAECLLALGEPESALK  106 (135)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCCHHHHHH
Confidence            346777888888999999999999999999998  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHH
Q 033417           93 DTEEALKLCPTNVKVV  108 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~  108 (119)
                      .++++++++|++....
T Consensus       107 ~~~~al~~~p~~~~~~  122 (135)
T TIGR02552       107 ALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHhccccchHH
Confidence            9999999999887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.37  E-value=5.8e-12  Score=96.43  Aligned_cols=99  Identities=13%  Similarity=0.103  Sum_probs=92.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|+++..+..+|..++..|  ++++|+..|++++++    +|++...+.++|.++..+|++++|+.
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~  454 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG--EFAQAGKDYQKSIDL----DPDFIFSHIQLGVTQYKEGSIASSMA  454 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            456788889999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .+++++++.|+++.+++.+|.++..
T Consensus       455 ~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       455 TFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999988753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.4e-12  Score=96.15  Aligned_cols=80  Identities=36%  Similarity=0.468  Sum_probs=72.6

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+...||..|..|  +|+.|+..|+.+|.+    +|.+..+|.||+.||..+|+|.+|+++..+.++++|+++++|.+
T Consensus         2 a~e~k~kgnaa~s~~--d~~~ai~~~t~ai~l----~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r   75 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSG--DFETAIRLFTEAIML----SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSR   75 (539)
T ss_pred             hhHHHHHHHhhcccc--cHHHHHHHHHHHHcc----CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHH
Confidence            345678999999999  999999999999999    99999999999999999999999999999999999999999999


Q ss_pred             HHhccc
Q 033417          111 CSGSHP  116 (119)
Q Consensus       111 ~a~~~~  116 (119)
                      +|.++.
T Consensus        76 ~Gaa~~   81 (539)
T KOG0548|consen   76 KGAALF   81 (539)
T ss_pred             hHHHHH
Confidence            988763

>PRK12370 invasion protein regulator; Provisional

Probab=99.36  E-value=6.5e-12  Score=95.25  Aligned_cols=96  Identities=17%  Similarity=0.041  Sum_probs=88.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++..++|+++.++...|..+...|  ++++|+..|++++++    +|+++.+++++|.++...|++++|+.
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS--EYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            467888999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhc
Q 033417           93 DTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      .++++++++|.++.+++.++.+
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999988776655443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.32  E-value=3.1e-12  Score=91.07  Aligned_cols=80  Identities=38%  Similarity=0.480  Sum_probs=74.7

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ....+.++||.+|+.|  .|++||.+|++++..    .|-++..+.|||.+|+++++|..|..+|..++.++..+.++|-
T Consensus        96 ~~SEiKE~GN~yFKQg--Ky~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen   96 KASEIKERGNTYFKQG--KYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             hhHHHHHhhhhhhhcc--chhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            3445889999999999  799999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 033417          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      ++|.+-
T Consensus       170 RR~~AR  175 (536)
T KOG4648|consen  170 RRMQAR  175 (536)
T ss_pred             HHHHHH
Confidence            998753

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.31  E-value=2.6e-11  Score=68.32  Aligned_cols=70  Identities=30%  Similarity=0.502  Sum_probs=64.9

Q ss_pred             hHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417           38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      ...+++.+  +|+.|+..+++++.+    +|+++..+..+|.|+..+|++.+|+.+++++++..|+++.+...++.
T Consensus         2 ~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQE--DYEEALEVLERALEL----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCC--CHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35678888  999999999999999    99999999999999999999999999999999999999988877664

>PRK12370 invasion protein regulator; Provisional

Probab=99.30  E-value=3.3e-11  Score=91.43  Aligned_cols=101  Identities=11%  Similarity=0.036  Sum_probs=90.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhch-------HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGK-------KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      .+++...++++..++|+.+.++...|.++...+.       +++++|+..+++++++    +|+++.++..+|.++...|
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcc
Confidence            3577788999999999999999999987764320       1589999999999999    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           86 NYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+..|+++++++|+++.+++.+|.++..
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  384 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFM  384 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988753

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.29  E-value=3.7e-11  Score=96.04  Aligned_cols=98  Identities=16%  Similarity=0.081  Sum_probs=80.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++..++|+ +..+.+.|.++.+.|  ++++|+..|.+++.+    +|+++.++.++|.++...|++++|+.
T Consensus       592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG--~~deA~~~l~~AL~l----~Pd~~~a~~nLG~aL~~~G~~eeAi~  664 (987)
T PRK09782        592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRH--NVPAAVSDLRAALEL----EPNNSNYQAALGYALWDSGDIAQSRE  664 (987)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            45667777788888886 788888888888888  788888888888888    88888888888888888888888888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|+++.+++.+|.++..
T Consensus       665 ~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        665 MLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            8888888888888888888877653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.28  E-value=2.8e-11  Score=67.28  Aligned_cols=66  Identities=27%  Similarity=0.320  Sum_probs=60.5

Q ss_pred             HHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417           42 VKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        42 ~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      +..|  +|++|+..|++++..    .|++..+++.+|.|+++.|++++|...+++++..+|+++..+.-+++
T Consensus         2 l~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQG--DYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTT--HHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhcc--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            5667  899999999999999    99999999999999999999999999999999999999888777664

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.28  E-value=4.9e-11  Score=92.38  Aligned_cols=100  Identities=9%  Similarity=-0.113  Sum_probs=94.1

Q ss_pred             CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ..+++...++.+..+.|++..+..+.+..+.+.+  .+++|+..+++++..    +|+++..++.+|.++..+|++++|+
T Consensus       101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~--~~eeA~~~~~~~l~~----~p~~~~~~~~~a~~l~~~g~~~~A~  174 (694)
T PRK15179        101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ--GIEAGRAEIELYFSG----GSSSAREILLEAKSWDEIGQSEQAD  174 (694)
T ss_pred             CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhcchHHHH
Confidence            3567888999999999999999999999999999  899999999999999    9999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..|++++.-+|++..++..+|.++..
T Consensus       175 ~~y~~~~~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        175 ACFERLSRQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999988753

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.2e-11  Score=83.95  Aligned_cols=82  Identities=35%  Similarity=0.462  Sum_probs=76.5

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+.+.|+.+|...  .|..|+..|.++|-+    +|..+..|.|++.|++++++|+.+..+|+++++++|+.++++|
T Consensus         9 ~a~qlkE~gnk~f~~k--~y~~ai~~y~raI~~----nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~   82 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPK--RYDDAIDCYSRAICI----NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY   82 (284)
T ss_pred             HHHHHHhccccccchh--hhchHHHHHHHHHhc----CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence            4667788999999876  899999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHhcccC
Q 033417          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      .+|.+.+.
T Consensus        83 flg~~~l~   90 (284)
T KOG4642|consen   83 FLGQWLLQ   90 (284)
T ss_pred             HHHHHHHh
Confidence            99988754

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=2.7e-11  Score=89.14  Aligned_cols=97  Identities=22%  Similarity=0.312  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+.+.++++..++|.....|..+|..+....  +-++-...|.+|.++    +|+++..|+.||+.++-+++|++|+.+|
T Consensus       344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~--~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADEN--QSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             hhhhhHHHHHhcCcccchHHHHHHHHHhhhh--ccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            4667888888889888888889999998887  889999999999999    9999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHhcccC
Q 033417           95 EEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++.++|.+.-+|..++.+.++
T Consensus       418 ~Kai~L~pe~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  418 QKAISLDPENAYAYIQLCCALYR  440 (606)
T ss_pred             HHHhhcChhhhHHHHHHHHHHHH
Confidence            99999999999999888877654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.23  E-value=5.1e-11  Score=95.25  Aligned_cols=98  Identities=14%  Similarity=0.091  Sum_probs=91.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++..++|+++..+.+.|..+...|  ++++|+..|.+++++    .|+++.+++++|.++..+|++++|+.
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G--~~eeAi~~l~~AL~l----~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG--DIAQSREMLERAHKG----LPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            457888999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+++++.++|++.......|....
T Consensus       699 ~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        699 YARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HHHHHHhcCCCCchhhhhhhHHHH
Confidence            999999999999988887776543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.22  E-value=1e-10  Score=66.79  Aligned_cols=73  Identities=22%  Similarity=0.343  Sum_probs=62.6

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      +|+.+..+.+.|..++..|  +|++|+..|++++.+..   ...|..+.++.++|.|+..+|++++|+..+++++++.
T Consensus         1 H~~~a~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELG--RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4788999999999999999  99999999999998722   1234568899999999999999999999999999863

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=2.6e-11  Score=90.24  Aligned_cols=90  Identities=20%  Similarity=0.180  Sum_probs=82.5

Q ss_pred             HHHHhcH--HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           22 AIAALKE--SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        22 ~~~~~~~--~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+...+|  .+++....+|..+.-.|  +|+.|+.+|+.||..    +|.+..+|+.+|..+..-.+.++||+.|++|++
T Consensus       419 eaa~~~~~~~DpdvQ~~LGVLy~ls~--efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  419 EAARQLPTKIDPDVQSGLGVLYNLSG--EFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HHHHhCCCCCChhHHhhhHHHHhcch--HHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            3334466  67888999999999988  999999999999999    999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcccC
Q 033417          100 LCPTNVKVVILCSGSHPN  117 (119)
Q Consensus       100 l~p~~~~a~~~~a~~~~~  117 (119)
                      |.|.++.+.|++|.+++.
T Consensus       493 LqP~yVR~RyNlgIS~mN  510 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMN  510 (579)
T ss_pred             cCCCeeeeehhhhhhhhh
Confidence            999999999999998864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=2.1e-10  Score=74.94  Aligned_cols=87  Identities=20%  Similarity=0.193  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ++..+..+...|..+...|  ++++|+..|.+++...|. .++.+.++.++|.++..+|++++|+..++++++++|++..
T Consensus        31 ~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADG--EYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            4567778999999999999  999999999999988322 2234678999999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 033417          107 VVILCSGSHP  116 (119)
Q Consensus       107 a~~~~a~~~~  116 (119)
                      ++..+|.++.
T Consensus       108 ~~~~lg~~~~  117 (172)
T PRK02603        108 ALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHH
Confidence            9999988774

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.6e-11  Score=80.31  Aligned_cols=85  Identities=28%  Similarity=0.273  Sum_probs=72.8

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc--------cC------CCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN--------VL------SDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--------~~------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ....+.+.||.+|+.|  +|.+|...|..||-..        |.      .+.....++.|.+.|++..|+|.++++.|.
T Consensus       177 av~~l~q~GN~lfk~~--~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLG--RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhHHHHHhhhhhhhhc--cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            4677899999999999  9999999999998541        11      022335588999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhccc
Q 033417           96 EALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+|..+|+|++|||++|.++.
T Consensus       255 eiL~~~~~nvKA~frRakAha  275 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHA  275 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHH
Confidence            999999999999999999864

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=2.2e-11  Score=91.73  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=84.2

Q ss_pred             HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ...+..-+|..++.|...||++-.++  +++.||.+|.+||.+    +|..+-+|-..|+-+.....++.|..+|+.||.
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            34455568999999999999999887  999999999999999    999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcccCC
Q 033417          100 LCPTNVKVVILCSGSHPNQ  118 (119)
Q Consensus       100 l~p~~~~a~~~~a~~~~~~  118 (119)
                      ++|++..|||.+|.+|+++
T Consensus       484 ~~~rhYnAwYGlG~vy~Kq  502 (638)
T KOG1126|consen  484 VDPRHYNAWYGLGTVYLKQ  502 (638)
T ss_pred             CCchhhHHHHhhhhheecc
Confidence            9999999999999999865

>PLN02789 farnesyltranstransferase

Probab=99.20  E-value=2.9e-10  Score=81.18  Aligned_cols=97  Identities=13%  Similarity=0.015  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++...+|++..+|..++.++.+.|+..+++++..+.++++.    +|.+..+|.+|+.++..+|+|++++.+|
T Consensus        90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~~~eeL~~~  165 (320)
T PLN02789         90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGGWEDELEYC  165 (320)
T ss_pred             HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            334444444444555555555555444444410113444555555555    6666666666666666667777777777


Q ss_pred             HHHHHhCCCcHHHHHHHHhcc
Q 033417           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++|+++|.|..+|+.++.++
T Consensus       166 ~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        166 HQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHCCCchhHHHHHHHHH
Confidence            777777777777777766554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.6e-10  Score=82.85  Aligned_cols=100  Identities=19%  Similarity=0.165  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----------------------------
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----------------------------   65 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------------------------   65 (119)
                      ++++.-+.++.++||+...+|.-.|-.++...  +-..|+..|++||+++|+                            
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK--Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA  424 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK--NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA  424 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc--ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence            45666777777777777777777777777766  677777777777777443                            


Q ss_pred             --CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           66 --SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                        -.|.++.+|..+|.||.++++.++|+.+|++++.....+..+++++|..|
T Consensus       425 ~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy  476 (559)
T KOG1155|consen  425 LELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY  476 (559)
T ss_pred             HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence              15666666666666666666666666666666666666666666666655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=2.2e-10  Score=83.89  Aligned_cols=80  Identities=13%  Similarity=0.102  Sum_probs=73.1

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      -++...--||-+--.+  ++++|+..|++|+.+    +|....+|..+|+-|+.|++...|++.|++|++++|.+..|||
T Consensus       329 R~ETCCiIaNYYSlr~--eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWY  402 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRS--EHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWY  402 (559)
T ss_pred             CccceeeehhHHHHHH--hHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHh
Confidence            3445555677777766  899999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 033417          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .+|++|
T Consensus       403 GLGQaY  408 (559)
T KOG1155|consen  403 GLGQAY  408 (559)
T ss_pred             hhhHHH
Confidence            999987

>PLN02789 farnesyltranstransferase

Probab=99.19  E-value=7.5e-10  Score=79.07  Aligned_cols=101  Identities=11%  Similarity=0.020  Sum_probs=92.8

Q ss_pred             CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH--H
Q 033417           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY--R   88 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~--~   88 (119)
                      +.++++....+++..++|++..+|..+|.++...|+ ++++++..+.+++..    +|.+..+|.+|+.+..++|..  +
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~----npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-DLEEELDFAEDVAED----NPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHH----CCcchHHhHHHHHHHHHcCchhhH
Confidence            357889999999999999999999999999999874 689999999999999    999999999999999999874  7


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++..++++++++|.|..+|..++.++.
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~  153 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLR  153 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            8899999999999999999999987653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.18  E-value=2.4e-10  Score=66.29  Aligned_cols=78  Identities=23%  Similarity=0.316  Sum_probs=66.7

Q ss_pred             ChhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417           13 TESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      .+.++..++++...+|+  +...+...|.++++.|  +|++|+..+++ +..    ++.++..++..|.|++++|+|++|
T Consensus         5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--~y~~A~~~~~~-~~~----~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--KYEEAIELLQK-LKL----DPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--HHHHHHHHHHC-HTH----HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--CHHHHHHHHHH-hCC----CCCCHHHHHHHHHHHHHhCCHHHH
Confidence            35677888888888873  6777888999999999  89999999999 778    788888888889999999999999


Q ss_pred             HHHHHHH
Q 033417           91 LTDTEEA   97 (119)
Q Consensus        91 ~~~~~~a   97 (119)
                      +..++++
T Consensus        78 i~~l~~~   84 (84)
T PF12895_consen   78 IKALEKA   84 (84)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9998874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.17  E-value=2.5e-10  Score=76.41  Aligned_cols=87  Identities=13%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHH-HHhchHh--HHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEY-VKKGKKH--YYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+++...++++..++|+++..+...|.++ +..|  +  +++|...+++++..    +|+++.+++++|.+++.+|++++
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g--~~~~~~A~~~l~~al~~----dP~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAG--QHMTPQTREMIDKALAL----DANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHcCCHHH
Confidence            45788899999999999999999999986 6666  5  59999999999999    99999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcH
Q 033417           90 ALTDTEEALKLCPTNV  105 (119)
Q Consensus        90 A~~~~~~al~l~p~~~  105 (119)
                      |+..++++++++|.+.
T Consensus       163 Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        163 AIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHhhCCCCc
Confidence            9999999999988654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.16  E-value=1.5e-10  Score=84.89  Aligned_cols=69  Identities=19%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+|+++..+.++|..++..|  +|++|+..|+++|++    +|+++.   +|+|+|.||..+|++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lG--ryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKG--RVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            48999999999999999999  999999999999999    999885   4999999999999999999999999998

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.15  E-value=5e-10  Score=86.63  Aligned_cols=94  Identities=10%  Similarity=0.053  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...++++..++|+++..+...|..+...|  ++++|+..+++++.+    +|+++.++.++|.++..+|++++|+..++
T Consensus       269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g--~~~eA~~~l~~al~l----~P~~~~a~~~La~~l~~~G~~~eA~~~l~  342 (656)
T PRK15174        269 AAEHWRHALQFNSDNVRIVTLYADALIRTG--QNEKAIPLLQQSLAT----HPDLPYVRAMYARALRQVGQYTAASDEFV  342 (656)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            455666666666666666666666666666  666666666666666    66666666666666666666666666666


Q ss_pred             HHHHhCCCcHHHHHHHHhcc
Q 033417           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++..+|++...++.+|.++
T Consensus       343 ~al~~~P~~~~~~~~~a~al  362 (656)
T PRK15174        343 QLAREKGVTSKWNRYAAAAL  362 (656)
T ss_pred             HHHHhCccchHHHHHHHHHH
Confidence            66666666655554444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.15  E-value=7.8e-10  Score=73.33  Aligned_cols=95  Identities=18%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc------------------------
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN------------------------   70 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------------------------   70 (119)
                      ++...+++....+|.+...+...|..++..|  ++++|+..|.+++..    .|.+                        
T Consensus        49 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~  122 (234)
T TIGR02521        49 VAKENLDKALEHDPDDYLAYLALALYYQQLG--ELEKAEDSFRRALTL----NPNNGDVLNNYGTFLCQQGKYEQAMQQF  122 (234)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3444455555555555555555555555555  555555555555555    3333                        


Q ss_pred             ------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           71 ------------SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        71 ------------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                                  ...+.++|.++...|++++|+..+.++++.+|+++.+++.+|.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence                        344555555555555555666666666655665555555555544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.14  E-value=4.2e-10  Score=87.03  Aligned_cols=99  Identities=15%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHH----HHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYD----AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      .+++...+.++...+|+++..+...|..+...|  ++++    |+..|++++.+    +|+++.++.++|.++...|+++
T Consensus       228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G--~~~eA~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        228 YQEAIQTGESALARGLDGAALRRSLGLAYYQSG--RSREAKLQAAEHWRHALQF----NSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CchhhHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHH
Confidence            346777888888889999999999999999999  7885    89999999999    9999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+..+++++.++|+++.++..+|.++..
T Consensus       302 eA~~~l~~al~l~P~~~~a~~~La~~l~~  330 (656)
T PRK15174        302 KAIPLLQQSLATHPDLPYVRAMYARALRQ  330 (656)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999887743

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=9e-10  Score=62.67  Aligned_cols=74  Identities=36%  Similarity=0.501  Sum_probs=36.3

Q ss_pred             HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhc
Q 033417           35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ...|..++..|  ++++|+..+.+++..    .|.+..++..+|.++...|++++|+..+++++.+.|.+..+++.+|.+
T Consensus         4 ~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   77 (100)
T cd00189           4 LNLGNLYYKLG--DYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHh--cHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            34444444444  455555555555554    444444444555555555555555555555555555444444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.14  E-value=1.2e-09  Score=71.08  Aligned_cols=86  Identities=19%  Similarity=0.154  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ...+..+...|..+...|  +|++|+..|.+++.+.+. .+..+.++.++|.++..+|++++|+..|++++.++|.+..+
T Consensus        32 ~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEG--EYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            445788899999999999  999999999999988322 12245689999999999999999999999999999999999


Q ss_pred             HHHHHhccc
Q 033417          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      +..+|.++.
T Consensus       109 ~~~la~i~~  117 (168)
T CHL00033        109 LNNMAVICH  117 (168)
T ss_pred             HHHHHHHHH
Confidence            999988765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.14  E-value=2.7e-10  Score=76.95  Aligned_cols=97  Identities=19%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +.+.+.++..++|++.+.+.+-|.-++..|  .|++|...|++|+.. |. -+.-+..+-|.|.|-++.|+++.|..+++
T Consensus        88 A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg--~~~eA~q~F~~Al~~-P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~  163 (250)
T COG3063          88 ADESYRKALSLAPNNGDVLNNYGAFLCAQG--RPEEAMQQFERALAD-PA-YGEPSDTLENLGLCALKAGQFDQAEEYLK  163 (250)
T ss_pred             HHHHHHHHHhcCCCccchhhhhhHHHHhCC--ChHHHHHHHHHHHhC-CC-CCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence            334444444444444444444444444444  444444444444442 11 23445566777777777777777777777


Q ss_pred             HHHHhCCCcHHHHHHHHhccc
Q 033417           96 EALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++|+++|+++.+...++..++
T Consensus       164 raL~~dp~~~~~~l~~a~~~~  184 (250)
T COG3063         164 RALELDPQFPPALLELARLHY  184 (250)
T ss_pred             HHHHhCcCCChHHHHHHHHHH
Confidence            777777777776666665544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.14  E-value=1.1e-09  Score=72.51  Aligned_cols=81  Identities=22%  Similarity=0.193  Sum_probs=76.3

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+...|..++..|  ++++|+..+.+++..    .|.+..++..+|.++...|++++|+..+++++++.|.+..+++
T Consensus        30 ~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  103 (234)
T TIGR02521        30 AAKIRVQLALGYLEQG--DLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN  103 (234)
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            4788899999999999  999999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHhccc
Q 033417          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      .+|.++.
T Consensus       104 ~~~~~~~  110 (234)
T TIGR02521       104 NYGTFLC  110 (234)
T ss_pred             HHHHHHH
Confidence            9887764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.12  E-value=7.1e-10  Score=75.94  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=84.6

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..+.....-+|++...+...|...++.|  +|..|+..+.++..+    .|.++.+|+.+|.+|.++|++++|...|.++
T Consensus        87 ~~~~~~~~~~~~d~~ll~~~gk~~~~~g--~~~~A~~~~rkA~~l----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA  160 (257)
T COG5010          87 AVLQKSAIAYPKDRELLAAQGKNQIRNG--NFGEAVSVLRKAARL----APTDWEAWNLLGAALDQLGRFDEARRAYRQA  160 (257)
T ss_pred             HHHhhhhccCcccHHHHHHHHHHHHHhc--chHHHHHHHHHHhcc----CCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence            3444445557888888888999999999  999999999999999    9999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHhccc
Q 033417           98 LKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~  116 (119)
                      +++.|..+....++|..|+
T Consensus       161 l~L~~~~p~~~nNlgms~~  179 (257)
T COG5010         161 LELAPNEPSIANNLGMSLL  179 (257)
T ss_pred             HHhccCCchhhhhHHHHHH
Confidence            9999999999999998775

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.11  E-value=4e-10  Score=80.39  Aligned_cols=87  Identities=26%  Similarity=0.300  Sum_probs=80.2

Q ss_pred             hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417           26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      -+|.++....++|+.++..|  .+..|+..|..||+.    +|++..+++.||.+|+.+|+...|+.++.++|++.|+..
T Consensus        33 ~~~advekhlElGk~lla~~--Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~  106 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARG--QLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM  106 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH
Confidence            36788999999999999988  899999999999999    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCC
Q 033417          106 KVVILCSGSHPNQ  118 (119)
Q Consensus       106 ~a~~~~a~~~~~~  118 (119)
                      -+...+|.+++++
T Consensus       107 ~ARiQRg~vllK~  119 (504)
T KOG0624|consen  107 AARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHhchhhhhc
Confidence            9999999988764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=3.3e-09  Score=64.31  Aligned_cols=91  Identities=13%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             ChhhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc---cHHHHHHHHHHHHHhcC
Q 033417           13 TESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~   86 (119)
                      .+++...+..+...+|+.   ...+...|.+++..|  ++++|+..|..++..    .|+   .+.++..+|.++..+|+
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~   91 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--KYADAAKAFLAVVKK----YPKSPKAPDALLKLGMSLQELGD   91 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHH----CCCCCcccHHHHHHHHHHHHhCC
Confidence            345777788887777654   567888999999998  899999999999988    554   36788999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHH
Q 033417           87 YRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      +++|+..++++++..|++..+..
T Consensus        92 ~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        92 KEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             hHHHHHHHHHHHHHCcCChhHHH
Confidence            99999999999999998876554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=1.4e-09  Score=66.05  Aligned_cols=80  Identities=15%  Similarity=0.125  Sum_probs=71.0

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---  104 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---  104 (119)
                      +..++..|..+++.|  ++++|+..|.+++..    .|++   +.+++.+|.+++..|++++|+..++.++..+|++   
T Consensus         2 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         2 EEAYYDAALLVLKAG--DYADAIQAFQAFLKK----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             cHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence            356789999999999  899999999999998    5554   6789999999999999999999999999999885   


Q ss_pred             HHHHHHHHhccc
Q 033417          105 VKVVILCSGSHP  116 (119)
Q Consensus       105 ~~a~~~~a~~~~  116 (119)
                      +.+++.+|.++.
T Consensus        76 ~~~~~~~~~~~~   87 (119)
T TIGR02795        76 PDALLKLGMSLQ   87 (119)
T ss_pred             cHHHHHHHHHHH
Confidence            678888888765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=3.7e-10  Score=85.22  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+..+...+|.+-.+|+..|.+|.+.+  .++.|.-.|++|+++    +|.+..+....|..+.++|+.++|+.
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe--k~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~  544 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE--KLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQ  544 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccc--hhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHH
Confidence            345666677777778888888888888888877  688888888888888    77777777777777777777777777


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+++|+-++|.++-..|.+|.++.
T Consensus       545 ~~~~A~~ld~kn~l~~~~~~~il~  568 (638)
T KOG1126|consen  545 LYEKAIHLDPKNPLCKYHRASILF  568 (638)
T ss_pred             HHHHHHhcCCCCchhHHHHHHHHH
Confidence            777777777777777777776654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.08  E-value=2.6e-09  Score=60.71  Aligned_cols=85  Identities=27%  Similarity=0.378  Sum_probs=77.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.......|.....+...|..+...+  ++++|+..+.+++..    .|.+...+..+|.++...|++++|..
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~   89 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLG--KYEEALEDYEKALEL----DPDNAKAYYNLGLAYYKLGKYEEALE   89 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC----CCcchhHHHHHHHHHHHHHhHHHHHH
Confidence            456777888888888988899999999999988  899999999999999    88888999999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 033417           93 DTEEALKLCPT  103 (119)
Q Consensus        93 ~~~~al~l~p~  103 (119)
                      .+.++++++|+
T Consensus        90 ~~~~~~~~~~~  100 (100)
T cd00189          90 AYEKALELDPN  100 (100)
T ss_pred             HHHHHHccCCC
Confidence            99999998874

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.06  E-value=2e-09  Score=72.86  Aligned_cols=96  Identities=17%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+.+.++++..++|+...++.-++..+.+.|  +.+.|-+.|++|+++    +|.+.++++|-|..+...|+|++|...|
T Consensus        53 ~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl----~p~~GdVLNNYG~FLC~qg~~~eA~q~F  126 (250)
T COG3063          53 QAKKNLEKALEHDPSYYLAHLVRAHYYQKLG--ENDLADESYRKALSL----APNNGDVLNNYGAFLCAQGRPEEAMQQF  126 (250)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--ChhhHHHHHHHHHhc----CCCccchhhhhhHHHHhCCChHHHHHHH
Confidence            4556667777777777777777777777777  677777777777777    7777777777777777777777777777


Q ss_pred             HHHHHh--CCCcHHHHHHHHhccc
Q 033417           95 EEALKL--CPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l--~p~~~~a~~~~a~~~~  116 (119)
                      ++++..  -|....++-++|.|-+
T Consensus       127 ~~Al~~P~Y~~~s~t~eN~G~Cal  150 (250)
T COG3063         127 ERALADPAYGEPSDTLENLGLCAL  150 (250)
T ss_pred             HHHHhCCCCCCcchhhhhhHHHHh
Confidence            777662  2344566666666544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=5.3e-09  Score=75.55  Aligned_cols=78  Identities=26%  Similarity=0.265  Sum_probs=72.1

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      ...+.+.+.++.+.+  +|..|+....++|.+    +|.++.+++++|.+++.+|+|+.|+.+|+++++++|.|..+...
T Consensus       257 ~~~~lNlA~c~lKl~--~~~~Ai~~c~kvLe~----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e  330 (397)
T KOG0543|consen  257 LACHLNLAACYLKLK--EYKEAIESCNKVLEL----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE  330 (397)
T ss_pred             HHHhhHHHHHHHhhh--hHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            556789999999998  999999999999999    99999999999999999999999999999999999999888776


Q ss_pred             HHhc
Q 033417          111 CSGS  114 (119)
Q Consensus       111 ~a~~  114 (119)
                      +..+
T Consensus       331 l~~l  334 (397)
T KOG0543|consen  331 LIKL  334 (397)
T ss_pred             HHHH
Confidence            6554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.04  E-value=1.2e-09  Score=74.18  Aligned_cols=85  Identities=22%  Similarity=0.259  Sum_probs=75.4

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      ++..+..++..|..++..|  +|++|+..|++++..    .|.++   .+++.+|.++...|++++|+..++++++..|+
T Consensus        29 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSG--DYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            3446788999999999999  899999999999999    66654   68899999999999999999999999999998


Q ss_pred             cHH---HHHHHHhcccC
Q 033417          104 NVK---VVILCSGSHPN  117 (119)
Q Consensus       104 ~~~---a~~~~a~~~~~  117 (119)
                      ++.   +++.+|.++..
T Consensus       103 ~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302       103 HPDADYAYYLRGLSNYN  119 (235)
T ss_pred             CCchHHHHHHHHHHHHH
Confidence            876   78999988754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.03  E-value=1.5e-09  Score=75.69  Aligned_cols=88  Identities=23%  Similarity=0.257  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------------------------CCcccHHHHHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------------------------SDSENSVLYANR   77 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~   77 (119)
                      +.++..|...|..+.+.|  ++++|+..|++++++.|.                              ..|.++.++..+
T Consensus       143 ~~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  220 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLG--DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL  220 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred             CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            345556666666666666  566666666666666442                              146667788888


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |.++..+|++++|+..+++++..+|+++..+...|.++..
T Consensus       221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             HHHhcccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999887753

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.03  E-value=8.1e-11  Score=86.27  Aligned_cols=81  Identities=32%  Similarity=0.433  Sum_probs=75.4

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+.+.++..+..+  .|+.|+..|+++|++    +|+++.++.+|+.++++.+++..|+.|+.++++++|...++|++
T Consensus         4 a~e~k~ean~~l~~~--~fd~avdlysKaI~l----dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r   77 (476)
T KOG0376|consen    4 AEELKNEANEALKDK--VFDVAVDLYSKAIEL----DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR   77 (476)
T ss_pred             hhhhhhHHhhhcccc--hHHHHHHHHHHHHhc----CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence            556778899999988  899999999999999    99999999999999999999999999999999999999999999


Q ss_pred             HHhcccC
Q 033417          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.+.+.
T Consensus        78 rg~a~m~   84 (476)
T KOG0376|consen   78 RGTAVMA   84 (476)
T ss_pred             ccHHHHh
Confidence            9988764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.02  E-value=2.4e-09  Score=87.28  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=67.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH--------------HHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV--------------LYANRA   78 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~a   78 (119)
                      .++++..++++..++|+++..+..+|.++++.|  ++++|+..|++++++    +|++..              .....|
T Consensus       285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~l~~Al~~----~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQG--DRARAVAQFEKALAL----DPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCccchhHHHHHHHhhhHHHHHHHH
Confidence            356777888888888988999999999999988  899999999999888    443221              122335


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           79 HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++...|++++|+..|+++++++|++..+++.+|.++.
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~  396 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM  396 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            55555566666666666666666665555555555543

>PRK15331 chaperone protein SicA; Provisional

Probab=99.01  E-value=2.5e-09  Score=69.12  Aligned_cols=89  Identities=15%  Similarity=0.097  Sum_probs=71.8

Q ss_pred             HHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417           23 IAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP  102 (119)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +..+.++..+..+..|-.++..|  ++++|...|+-...+    +|.++..++.+|.|+..+++|++|+..|..+..+++
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~  102 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQG--RLDEAETFFRFLCIY----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK  102 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            33456777888888888888888  788888888888888    888888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHhcccC
Q 033417          103 TNVKVVILCSGSHPN  117 (119)
Q Consensus       103 ~~~~a~~~~a~~~~~  117 (119)
                      +++...+..|.||+.
T Consensus       103 ~dp~p~f~agqC~l~  117 (165)
T PRK15331        103 NDYRPVFFTGQCQLL  117 (165)
T ss_pred             CCCCccchHHHHHHH
Confidence            888888888888754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.01  E-value=3.7e-09  Score=82.02  Aligned_cols=96  Identities=11%  Similarity=0.114  Sum_probs=70.2

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|+++..+...|..+...|  + .+|+..+++++.+    .|+++.++.++|.++..+|++++|+..
T Consensus       787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~-~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~  859 (899)
T TIGR02917       787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK--D-PRALEYAEKALKL----APNIPAILDTLGWLLVEKGEADRALPL  859 (899)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--c-HHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            34555666666666666666666666666666  5 5566666666666    677777777788888888888888888


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|.++.+++.+|.++.
T Consensus       860 ~~~a~~~~~~~~~~~~~l~~~~~  882 (899)
T TIGR02917       860 LRKAVNIAPEAAAIRYHLALALL  882 (899)
T ss_pred             HHHHHhhCCCChHHHHHHHHHHH
Confidence            88888888888888888877764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.00  E-value=4.2e-09  Score=85.86  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=83.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHH--------------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRA--------------   78 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a--------------   78 (119)
                      .+++...+.++..++|.++.++..+|.++...|  ++++|+..|++++.+    +|.+..++..++              
T Consensus       367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARK--DYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence            456778888999999999999999999999999  899999999999999    777665554443              


Q ss_pred             ----------------------------HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           79 ----------------------------HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        79 ----------------------------~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                                                  .++...|++++|+..|+++++++|+++.+++.+|.+|..
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                        444567899999999999999999999999999987754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.98  E-value=6.2e-09  Score=80.87  Aligned_cols=100  Identities=6%  Similarity=-0.054  Sum_probs=90.2

Q ss_pred             CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ++.++...+..+....|.+++++..+|.+..+.|  .+++|...+..++++    .|++..++.+++.++.+++++++|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g--~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~  140 (694)
T PRK15179         67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAH--RSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGR  140 (694)
T ss_pred             chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHH
Confidence            3444555555566667889999999999999999  899999999999999    9999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..+++++..+|++..+++.+|.++.+
T Consensus       141 ~~~~~~l~~~p~~~~~~~~~a~~l~~  166 (694)
T PRK15179        141 AEIELYFSGGSSSAREILLEAKSWDE  166 (694)
T ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999988753

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.98  E-value=5.3e-09  Score=81.16  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|+....+...|..++..|  ++++|+..+.+++..    +|.+..++..+|.++...|++++|+..
T Consensus       142 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~  215 (899)
T TIGR02917       142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN--RFDEARALIDEVLTA----DPGNVDALLLKGDLLLSLGNIELALAA  215 (899)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            45556666666677777777777777777777  677777777777777    777777777777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|+++.+++.++.++.
T Consensus       216 ~~~a~~~~p~~~~~~~~~~~~~~  238 (899)
T TIGR02917       216 YRKAIALRPNNPAVLLALATILI  238 (899)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHH
Confidence            77777777777777777766553

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.98  E-value=1.1e-09  Score=60.97  Aligned_cols=49  Identities=22%  Similarity=0.280  Sum_probs=45.9

Q ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           69 ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++..|..+|.+++..|+|++|+.+|+++++++|+++.+++++|.++..
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~   49 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK   49 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999864

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.96  E-value=8.4e-09  Score=81.08  Aligned_cols=95  Identities=12%  Similarity=0.025  Sum_probs=78.1

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|.++..+...|..+...|  ++++|+..+++++..    .|+++. +..+|.++...|++++|+..
T Consensus        66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~  138 (765)
T PRK10049         66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAG--QYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRA  138 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence            45667777777788888888888888888887  788888888888888    888888 88888888888888888888


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|++..+++.+|.++
T Consensus       139 l~~al~~~P~~~~~~~~la~~l  160 (765)
T PRK10049        139 MTQALPRAPQTQQYPTEYVQAL  160 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Confidence            8888888888888888777665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.94  E-value=1.1e-09  Score=63.43  Aligned_cols=65  Identities=28%  Similarity=0.389  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           48 HYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+.|+..++++++.    .|.  +...++.+|.|++++|+|++|+..+++ ++.+|.++..++.+|.|+++
T Consensus         4 ~y~~Ai~~~~k~~~~----~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    4 NYENAIKYYEKLLEL----DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             -HHHHHHHHHHHHHH----HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            899999999999999    553  677788899999999999999999999 88999999999999998864

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.93  E-value=2.3e-08  Score=69.69  Aligned_cols=90  Identities=10%  Similarity=0.012  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ++...+.......|+.   +.+++-.|..++..|  +|++|+..|.+.+..-|. .|..+.+++.+|.++..+|++++|+
T Consensus       161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--~~~~A~~~f~~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~  237 (263)
T PRK10803        161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--KKDDAAYYFASVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAK  237 (263)
T ss_pred             HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHH
Confidence            4555566666666665   456777777777776  677777777777766333 4445667777777777777777777


Q ss_pred             HHHHHHHHhCCCcHHH
Q 033417           92 TDTEEALKLCPTNVKV  107 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a  107 (119)
                      ..|+++++..|++..+
T Consensus       238 ~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        238 AVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHCcCCHHH
Confidence            7777777777766544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.93  E-value=1.3e-08  Score=75.00  Aligned_cols=99  Identities=17%  Similarity=0.122  Sum_probs=93.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++.+.++.+.+..|+++-.+.-.+.+++..+  +..+|++.+++++.+    +|..+.+..+.|.++++.|++.+|+.
T Consensus       322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--k~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~eai~  395 (484)
T COG4783         322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--KAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQEAIR  395 (484)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChHHHHH
Confidence            456778899999999999999999999999999  799999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..+..+.-+|+++..|..+|++|-.
T Consensus       396 ~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         396 ILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHHHHhhcCCCCchHHHHHHHHHHH
Confidence            9999999999999999999998743

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=3.7e-09  Score=79.00  Aligned_cols=85  Identities=19%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -+++++.+..++..+|.+...|..+|-.+-...  ..++||..|++|+++    .|..+.+++|+|.+++.+|.|.||+.
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            357888999999999999999999999998877  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 033417           93 DTEEALKLCPT  103 (119)
Q Consensus        93 ~~~~al~l~p~  103 (119)
                      ++-.||.+.+.
T Consensus       520 hlL~AL~mq~k  530 (579)
T KOG1125|consen  520 HLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHhhhc
Confidence            99999998764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.91  E-value=3.7e-08  Score=64.32  Aligned_cols=87  Identities=20%  Similarity=0.290  Sum_probs=75.1

Q ss_pred             ChhhHHHHHHHHHhcHH---HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC---
Q 033417           13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---   86 (119)
                      .+++...+.++..+.|+   .+..+...|.++.+.|  ++++|+..|.+++..    .|.+...+..+|.++..+|+   
T Consensus        51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~  124 (172)
T PRK02603         51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--EHDKALEYYHQALEL----NPKQPSALNNIAVIYHKRGEKAE  124 (172)
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChHh
Confidence            34566777777766554   3578999999999999  999999999999999    99999999999999999887   


Q ss_pred             -----------HHHHHHHHHHHHHhCCCcH
Q 033417           87 -----------YRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        87 -----------~~~A~~~~~~al~l~p~~~  105 (119)
                                 +.+|+..+++++.++|++.
T Consensus       125 a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        125 EAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence                       6889999999999999863

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.91  E-value=1.8e-08  Score=68.48  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=76.4

Q ss_pred             ChhhHHHHHHHHHhcHHHH---HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH---HHHHHHHHHHHh--
Q 033417           13 TESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLL--   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l--   84 (119)
                      .+++...++.+...+|+++   .++...|..++..|  ++++|+..|.++++.    .|+++.   +++.+|.+++..  
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~g~~~~~~~~  122 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRL----HPNHPDADYAYYLRGLSNYNQID  122 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCCchHHHHHHHHHHHHHhcc
Confidence            3456777888888877654   68899999999999  999999999999999    665554   789999999987  


Q ss_pred             ------cCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           85 ------GNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        85 ------~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                            |++++|+..+++++..+|++..++
T Consensus       123 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       123 RVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence                  889999999999999999986553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.91  E-value=1.7e-08  Score=72.99  Aligned_cols=102  Identities=10%  Similarity=-0.025  Sum_probs=83.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|++...+...|..++..|  ++++|+..+++++...+.........+..+|.++...|++++|+.
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  128 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRG--EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE  128 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            456888899999999999999999999999998  899999999988875111111234577888999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++.+|.+..++..++.++.
T Consensus       129 ~~~~~l~~~~~~~~~~~~la~~~~  152 (389)
T PRK11788        129 LFLQLVDEGDFAEGALQQLLEIYQ  152 (389)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHH
Confidence            999999988888888888877664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.89  E-value=2.9e-08  Score=71.70  Aligned_cols=96  Identities=19%  Similarity=0.158  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc-----HHHHHHHHHHHHHhcCHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN-----SVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~a~~~~~l~~~~~   89 (119)
                      ++...+.+....+|.....+...+..+...|  ++++|+..+.+++..    .|..     ...+..+|.++...|++++
T Consensus       125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEK--DWQKAIDVAERLEKL----GGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            4445555555556666666666666666666  677777776666665    3322     2345566666666777777


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           90 ALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+..++++++++|++..+++.+|.++.
T Consensus       199 A~~~~~~al~~~p~~~~~~~~la~~~~  225 (389)
T PRK11788        199 ARALLKKALAADPQCVRASILLGDLAL  225 (389)
T ss_pred             HHHHHHHHHhHCcCCHHHHHHHHHHHH
Confidence            777777777777766666666666553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.89  E-value=2.1e-08  Score=78.85  Aligned_cols=97  Identities=9%  Similarity=0.092  Sum_probs=88.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+.++...+|..+..+...|..+...|  ++++|+..|++++.+    +|.++.++..+|.++...|++++|+.
T Consensus        31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLK--QWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            345667777777778888889999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++.+|+++. ++.+|.++.
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHH
Confidence            99999999999999 999988764

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.88  E-value=6.3e-08  Score=63.45  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=72.3

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc--------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKG--------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      +.+.+..+.....||.+++.+.+-|..+....        ++.+++|+..|+++|.+    +|+...++++.|.++..++
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----NPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHH
Confidence            45667777888899999999999999987653        12567889999999999    9999999999999998865


Q ss_pred             C-----------HHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           86 N-----------YRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        86 ~-----------~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .           |++|..+|+++.+.+|+|.--...+
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            3           7899999999999999886544333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=7e-09  Score=77.53  Aligned_cols=99  Identities=17%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC---cccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD---SENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      +...+..+..+.|.++..+.+.|.+.|..+  .|.+|+..|+.++...+.+.   +.....+.|+|+++.+++.+++||.
T Consensus       399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~--~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  399 AEKFFKQALAIAPSDPLVLHELGVVAYTYE--EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHhcCCCcchhhhhhhheeehHh--hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            445677777888888888888888888766  78888888888884433322   2234567888888888888888888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++|.+.|.++.+|-.+|.+|.
T Consensus       477 ~~q~aL~l~~k~~~~~asig~iy~  500 (611)
T KOG1173|consen  477 YYQKALLLSPKDASTHASIGYIYH  500 (611)
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHH
Confidence            888888888888888888887763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=6.9e-08  Score=66.36  Aligned_cols=95  Identities=20%  Similarity=0.187  Sum_probs=85.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc---CHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~   89 (119)
                      +.++++.+......-+.+.++|.+.+..|+..|  +|++|.-+|++.+-+    .|.++..+..+|.+++-+|   ++.-
T Consensus       136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~--~f~kA~fClEE~ll~----~P~n~l~f~rlae~~Yt~gg~eN~~~  209 (289)
T KOG3060|consen  136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG--DFEKAAFCLEELLLI----QPFNPLYFQRLAEVLYTQGGAENLEL  209 (289)
T ss_pred             cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            346777888888888999999999999999999  999999999999999    9999999999999988765   6889


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHh
Q 033417           90 ALTDTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      |..+|.++++++|.+..+++.+-.
T Consensus       210 arkyy~~alkl~~~~~ral~GI~l  233 (289)
T KOG3060|consen  210 ARKYYERALKLNPKNLRALFGIYL  233 (289)
T ss_pred             HHHHHHHHHHhChHhHHHHHHHHH
Confidence            999999999999999988887643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=4.2e-08  Score=68.61  Aligned_cols=97  Identities=20%  Similarity=0.172  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc---CHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRAL   91 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~   91 (119)
                      .....++.....||.+++.|..+|..++..|  ++..|...|.+++++    .|+++.++...|.+++...   ...++.
T Consensus       140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~--~~~~A~~AY~~A~rL----~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         140 ALIARLETHLQQNPGDAEGWDLLGRAYMALG--RASDALLAYRNALRL----AGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            3344566666789999999999999999999  999999999999999    8999999988888877653   367888


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..+++++.+||+++.+.+-+|..+++
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe  239 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFE  239 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            89999999999999999998877654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.85  E-value=4e-08  Score=65.95  Aligned_cols=85  Identities=21%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---VK  106 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~  106 (119)
                      .+..++..|...+..|  +|.+|+..|++.+..-|. .|.-+.+.+.+|.++++.|++.+|+..+++.++..|++   +.
T Consensus         4 ~~~~lY~~a~~~~~~g--~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    4 TAEALYQKALEALQQG--DYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             -HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence            4778999999999999  999999999999988555 55667899999999999999999999999999999976   47


Q ss_pred             HHHHHHhcccC
Q 033417          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      ++|.+|.+++.
T Consensus        81 A~Y~~g~~~~~   91 (203)
T PF13525_consen   81 ALYMLGLSYYK   91 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            89999988653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.85  E-value=9.1e-08  Score=62.15  Aligned_cols=87  Identities=17%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             ChhhHHHHHHHHHhcHH---HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH-------
Q 033417           13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL-------   82 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~-------   82 (119)
                      .+++...+.++..+.|+   .+..+.+.|.++...|  ++++|+..|.+++.+    .|.....+.++|.++.       
T Consensus        51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~Al~~----~~~~~~~~~~la~i~~~~~~~~~  124 (168)
T CHL00033         51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--EHTKALEYYFQALER----NPFLPQALNNMAVICHYRGEQAI  124 (168)
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHhhHHHH
Confidence            45667778888777554   4568999999999999  899999999999999    8988999999999998       


Q ss_pred             HhcCHH-------HHHHHHHHHHHhCCCcH
Q 033417           83 LLGNYR-------RALTDTEEALKLCPTNV  105 (119)
Q Consensus        83 ~l~~~~-------~A~~~~~~al~l~p~~~  105 (119)
                      .+|+++       +|+..+++++..+|++.
T Consensus       125 ~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        125 EQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            777776       55566666778888653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.82  E-value=7.5e-08  Score=66.43  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLLGNYRRALTDTEEALKLCPTN--  104 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--  104 (119)
                      .+..++..|...+..|  +|++|+..|++.+..    .|..+.   +.+.+|.++++++++.+|+..+++.++++|++  
T Consensus        31 ~~~~~Y~~A~~~~~~g--~y~~Ai~~f~~l~~~----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDG--NWKQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            4677889999999999  999999999999999    665554   45889999999999999999999999999876  


Q ss_pred             -HHHHHHHHhcc
Q 033417          105 -VKVVILCSGSH  115 (119)
Q Consensus       105 -~~a~~~~a~~~  115 (119)
                       +.++|.+|.++
T Consensus       105 ~~~a~Y~~g~~~  116 (243)
T PRK10866        105 IDYVLYMRGLTN  116 (243)
T ss_pred             hHHHHHHHHHhh
Confidence             57889999875

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.81  E-value=1.4e-08  Score=48.90  Aligned_cols=34  Identities=35%  Similarity=0.500  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4578999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.81  E-value=2.4e-08  Score=51.07  Aligned_cols=44  Identities=18%  Similarity=0.052  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhc
Q 033417           71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      +.++..+|.++..+|++++|+..++++++.+|+++.++..+|.+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            35688899999999999999999999999999999999998864

>PRK15331 chaperone protein SicA; Provisional

Probab=98.81  E-value=5.9e-08  Score=62.82  Aligned_cols=86  Identities=10%  Similarity=-0.034  Sum_probs=77.7

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+..+...+|-+.+.+..+|.++...+  +|++|+..|..+..+    +++++...+..|.|++.+|+...|+..
T Consensus        54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--~y~~Ai~~Y~~A~~l----~~~dp~p~f~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331         54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--QFQKACDLYAVAFTL----LKNDYRPVFFTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHc----ccCCCCccchHHHHHHHhCCHHHHHHH
Confidence            45777889999999999999999999999887  999999999999999    889999999999999999999999999


Q ss_pred             HHHHHHhCCCcHH
Q 033417           94 TEEALKLCPTNVK  106 (119)
Q Consensus        94 ~~~al~l~p~~~~  106 (119)
                      +..++. +|.+..
T Consensus       128 f~~a~~-~~~~~~  139 (165)
T PRK15331        128 FELVNE-RTEDES  139 (165)
T ss_pred             HHHHHh-CcchHH
Confidence            999998 565443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.81  E-value=9.1e-08  Score=60.66  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=72.6

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV---KV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a  107 (119)
                      +..++..|...++.|  +|.+|+..++.....-|- .+-...+...++.+|++.++|.+|+..+++-++++|+++   -+
T Consensus        10 ~~~ly~~a~~~l~~~--~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen   10 PQELYQEAQEALQKG--NYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            667899999999999  999999999998877443 445567889999999999999999999999999999875   67


Q ss_pred             HHHHHhcccC
Q 033417          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      +|.+|.+++.
T Consensus        87 ~Y~~gL~~~~   96 (142)
T PF13512_consen   87 YYMRGLSYYE   96 (142)
T ss_pred             HHHHHHHHHH
Confidence            8888887764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.78  E-value=1e-07  Score=74.39  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=89.6

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++++.+..+..++|..+.+|..+|.++-+.|  +.++|+...-.|--+    +|.+...|...+..-..+|++.+|+-+
T Consensus       156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG--DIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             HHHHHHHHHHHHhCccchhhHHHHHHHHHHcc--cHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            46778888999999999999999999999999  899999999999888    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |.+||+.+|.+++..++++..|.
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHH
Confidence            99999999999999999887764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.77  E-value=5.7e-08  Score=69.58  Aligned_cols=92  Identities=15%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ++..+.++...+|++-.+++.+|..|...|  .-..|+..+++.|++    .|+...+...||.+++++|.+++|..+|+
T Consensus        57 ALt~yHaAve~dp~~Y~aifrRaT~yLAmG--ksk~al~Dl~rVlel----KpDF~~ARiQRg~vllK~Gele~A~~DF~  130 (504)
T KOG0624|consen   57 ALTHYHAAVEGDPNNYQAIFRRATVYLAMG--KSKAALQDLSRVLEL----KPDFMAARIQRGVVLLKQGELEQAEADFD  130 (504)
T ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHhhhc--CCccchhhHHHHHhc----CccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence            455677778889999999999999999999  689999999999999    99999999999999999999999999999


Q ss_pred             HHHHhCCCc---HHHHHHHHh
Q 033417           96 EALKLCPTN---VKVVILCSG  113 (119)
Q Consensus        96 ~al~l~p~~---~~a~~~~a~  113 (119)
                      ++|+-+|.+   .+++-+++.
T Consensus       131 ~vl~~~~s~~~~~eaqskl~~  151 (504)
T KOG0624|consen  131 QVLQHEPSNGLVLEAQSKLAL  151 (504)
T ss_pred             HHHhcCCCcchhHHHHHHHHh
Confidence            999999944   455555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=2.3e-07  Score=62.18  Aligned_cols=76  Identities=18%  Similarity=0.222  Sum_probs=69.1

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..|.++|.+.++.+  .++.||...+++|++    .|.+-.++.+||.+|.++.+|++|+.+|+++++++|..-++.-
T Consensus       133 rsIly~Nraaa~iKl~--k~e~aI~dcsKaiel----~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~  206 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLR--KWESAIEDCSKAIEL----NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE  206 (271)
T ss_pred             HHHHHhhhHHHHHHhh--hHHHHHHHHHhhHhc----CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence            4666889999999999  699999999999999    9999999999999999999999999999999999998876654


Q ss_pred             HH
Q 033417          110 LC  111 (119)
Q Consensus       110 ~~  111 (119)
                      ..
T Consensus       207 ~i  208 (271)
T KOG4234|consen  207 AI  208 (271)
T ss_pred             HH
Confidence            43

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.75  E-value=1.2e-07  Score=73.12  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++++...+..+..+.|-.+..|+..|..+...|  .+.+|...|..|+.+    +|+.+.....+|.++++.|+..-|..
T Consensus       666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~--~~~EA~~af~~Al~l----dP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKG--QLEEAKEAFLVALAL----DPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH--hhHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            445666788888899999999999999999988  899999999999999    99999999999999999998666665


Q ss_pred             --HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 --DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 --~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                        ....+++++|.++++||.+|.++.+
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKK  766 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence              8999999999999999999988754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=9.6e-09  Score=74.57  Aligned_cols=82  Identities=32%  Similarity=0.436  Sum_probs=77.0

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+......|+..++..  +|.+|+..|+.||++    .|+++..|.+|+.+++.+|+|++|..++++.++++|..++++.
T Consensus        48 ~Ae~~k~~gn~~yk~k--~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~  121 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQK--TYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQL  121 (486)
T ss_pred             HHHHHHhhcchHHHHh--hHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcccccc
Confidence            5777889999999987  899999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHhcccC
Q 033417          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      +.++|+..
T Consensus       122 r~~~c~~a  129 (486)
T KOG0550|consen  122 REGQCHLA  129 (486)
T ss_pred             chhhhhhh
Confidence            99988753

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.71  E-value=7.8e-08  Score=75.64  Aligned_cols=97  Identities=22%  Similarity=0.250  Sum_probs=84.9

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+-..+......+|+++..+.-++...|..+  +|..|+.+|..++.++|..   -++....+|+|+.++|+.+.|+..
T Consensus       147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk--dY~~al~yyk~al~inp~~---~aD~rIgig~Cf~kl~~~~~a~~a  221 (1018)
T KOG2002|consen  147 DDADAQFHFVLKQSPDNILALLGKARIAYNKK--DYRGALKYYKKALRINPAC---KADVRIGIGHCFWKLGMSEKALLA  221 (1018)
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHhccc--cHHHHHHHHHHHHhcCccc---CCCccchhhhHHHhccchhhHHHH
Confidence            45667888888999999999999999999988  9999999999999994431   234566789999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.++++++|+++.++..+|.+-
T Consensus       222 ~~ralqLdp~~v~alv~L~~~~  243 (1018)
T KOG2002|consen  222 FERALQLDPTCVSALVALGEVD  243 (1018)
T ss_pred             HHHHHhcChhhHHHHHHHHHHH
Confidence            9999999999999999988753

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.70  E-value=2.1e-07  Score=63.94  Aligned_cols=96  Identities=17%  Similarity=0.063  Sum_probs=88.2

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ..+...+.++..++|+++..+..+|.++-+.|  +++.|-.-|.+++++    .|.++.+..|+|..++-.|+++.|...
T Consensus       117 ~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G--r~~~Ar~ay~qAl~L----~~~~p~~~nNlgms~~L~gd~~~A~~l  190 (257)
T COG5010         117 GEAVSVLRKAARLAPTDWEAWNLLGAALDQLG--RFDEARRAYRQALEL----APNEPSIANNLGMSLLLRGDLEDAETL  190 (257)
T ss_pred             HHHHHHHHHHhccCCCChhhhhHHHHHHHHcc--ChhHHHHHHHHHHHh----ccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence            45778889999999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.++...-+.+..+-.+++.+.
T Consensus       191 ll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         191 LLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             HHHHHhCCCCchHHHHHHHHHH
Confidence            9999888777887777776654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.69  E-value=3.4e-07  Score=57.53  Aligned_cols=80  Identities=25%  Similarity=0.290  Sum_probs=67.9

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----H
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN----V  105 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~  105 (119)
                      .+..+--.|..+-..|  +.+.|++.|.++|.+    .|..+.+|+||+.++.-.|+.++|+.+..+++++.-+.    .
T Consensus        42 ~S~~LEl~~valaE~g--~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac  115 (175)
T KOG4555|consen   42 ASRELELKAIALAEAG--DLDGALELFGQALCL----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC  115 (175)
T ss_pred             HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHh----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence            3556677888888888  999999999999999    99999999999999999999999999999999985432    3


Q ss_pred             HHHHHHHhcc
Q 033417          106 KVVILCSGSH  115 (119)
Q Consensus       106 ~a~~~~a~~~  115 (119)
                      .+|..+|..|
T Consensus       116 qa~vQRg~ly  125 (175)
T KOG4555|consen  116 QAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHH
Confidence            5566666554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.68  E-value=2.5e-07  Score=64.56  Aligned_cols=80  Identities=13%  Similarity=0.010  Sum_probs=68.9

Q ss_pred             HHHHHHHhHHH-HHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---
Q 033417           31 AIELKEKGNEY-VKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRALTDTEEALKLCPT---  103 (119)
Q Consensus        31 ~~~~~~~g~~~-~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---  103 (119)
                      ....++.+..+ ++.|  +|++|+..|...+..    .|+.   +.+++.+|.+|+..|++++|+..|+++++..|+   
T Consensus       142 e~~~Y~~A~~l~~~~~--~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        142 ANTDYNAAIALVQDKS--RQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            35667777766 5667  899999999999999    7766   589999999999999999999999999998876   


Q ss_pred             cHHHHHHHHhccc
Q 033417          104 NVKVVILCSGSHP  116 (119)
Q Consensus       104 ~~~a~~~~a~~~~  116 (119)
                      .+++++.+|.++.
T Consensus       216 ~~dAl~klg~~~~  228 (263)
T PRK10803        216 AADAMFKVGVIMQ  228 (263)
T ss_pred             hhHHHHHHHHHHH
Confidence            5789999988874

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.67  E-value=7.7e-08  Score=67.14  Aligned_cols=98  Identities=15%  Similarity=0.100  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...+...-... .++..+......+...+  +++++...+.++... +. .+.++.++..+|.++.+.|++++|+.++
T Consensus        95 ~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~--~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   95 EALKLAEKAYERD-GDPRYLLSALQLYYRLG--DYDEAEELLEKLEEL-PA-APDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ------------------------H-HHHTT---HHHHHHHHHHHHH--T----T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             ccccccccccccc-cccchhhHHHHHHHHHh--HHHHHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4444444443333 45677777778888888  899999999997765 11 3678899999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHhcccC
Q 033417           95 EEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++++++|+++.+...++.++..
T Consensus       170 ~~al~~~P~~~~~~~~l~~~li~  192 (280)
T PF13429_consen  170 RKALELDPDDPDARNALAWLLID  192 (280)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHCT
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999988877653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.67  E-value=9.3e-08  Score=45.77  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +.+++.+|.+++.+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4578889999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=98.64  E-value=2.8e-07  Score=68.08  Aligned_cols=89  Identities=18%  Similarity=0.115  Sum_probs=82.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ..++....+++..++|.++.++...|......+  +++.|+..+++|+.+    +|+.+.+++..|....-.|+.++|+.
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~--~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~~~~a~~  393 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSG--QAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEKIEEARI  393 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--chhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            456778899999999999999999999999988  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHH
Q 033417           93 DTEEALKLCPTNVKV  107 (119)
Q Consensus        93 ~~~~al~l~p~~~~a  107 (119)
                      ..+++++++|.-..+
T Consensus       394 ~i~~alrLsP~~~~~  408 (458)
T PRK11906        394 CIDKSLQLEPRRRKA  408 (458)
T ss_pred             HHHHHhccCchhhHH
Confidence            999999999965443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.63  E-value=4.4e-07  Score=68.71  Aligned_cols=75  Identities=19%  Similarity=0.143  Sum_probs=67.6

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +|.++..+...|..+...|  ++++|...+++|+.+    +| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       416 ~~~~~~~~~ala~~~~~~g--~~~~A~~~l~rAl~L----~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKG--KTDEAYQAINKAIDL----EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CcCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            6666788888888888888  899999999999999    88 5789999999999999999999999999999998875


Q ss_pred             HH
Q 033417          107 VV  108 (119)
Q Consensus       107 a~  108 (119)
                      -+
T Consensus       489 ~~  490 (517)
T PRK10153        489 LY  490 (517)
T ss_pred             HH
Confidence            43

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=5.1e-07  Score=67.79  Aligned_cols=79  Identities=28%  Similarity=0.361  Sum_probs=70.4

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ....+.+.|-.+-+.+  .|++||..|+++|.+    .|.++..|...|.+|..+|+++.|+..|.++|-++|++..+--
T Consensus       454 w~p~~~NLGH~~Rkl~--~~~eAI~~~q~aL~l----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~  527 (611)
T KOG1173|consen  454 WEPTLNNLGHAYRKLN--KYEEAIDYYQKALLL----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE  527 (611)
T ss_pred             hhHHHHhHHHHHHHHh--hHHHHHHHHHHHHHc----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence            3455889999999998  799999999999999    9999999999999999999999999999999999999966555


Q ss_pred             HHHhc
Q 033417          110 LCSGS  114 (119)
Q Consensus       110 ~~a~~  114 (119)
                      -++.+
T Consensus       528 lL~~a  532 (611)
T KOG1173|consen  528 LLKLA  532 (611)
T ss_pred             HHHHH
Confidence            44443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.60  E-value=2e-07  Score=66.68  Aligned_cols=92  Identities=14%  Similarity=0.009  Sum_probs=69.1

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .++.....+|.....+...|..+...|  ++++|+..+++++.+    .|+++.++..+|.++...|++++|+..+++++
T Consensus       102 ~l~~~~~~~~~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l  175 (355)
T cd05804         102 VLPLWAPENPDYWYLLGMLAFGLEEAG--QYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR  175 (355)
T ss_pred             HHhccCcCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence            333333456666677777888888888  889999999999988    88888888888889888999999999999888


Q ss_pred             HhCCCcH----HHHHHHHhccc
Q 033417           99 KLCPTNV----KVVILCSGSHP  116 (119)
Q Consensus        99 ~l~p~~~----~a~~~~a~~~~  116 (119)
                      ...|..+    ..++.+|.++.
T Consensus       176 ~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         176 DTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             hccCCCcchhHHHHHHHHHHHH
Confidence            8876432    23445665543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.58  E-value=4.4e-07  Score=70.97  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      .+++..+.+.+..+.+.|  .|.+|+..+...+...+.   .+...|..+|.|+..+|.+++|+..|.+++.++|++.++
T Consensus       411 ~d~~dL~~d~a~al~~~~--~~~~Al~~l~~i~~~~~~---~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~  485 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIG--KYKEALRLLSPITNREGY---QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA  485 (895)
T ss_pred             hhhHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCccc---cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence            356778899999999999  899999999999887322   347789999999999999999999999999999999999


Q ss_pred             HHHHHhcccC
Q 033417          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      ...++.++.+
T Consensus       486 Ri~Lasl~~~  495 (895)
T KOG2076|consen  486 RITLASLYQQ  495 (895)
T ss_pred             hhhHHHHHHh
Confidence            9999887754

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.57  E-value=1.1e-06  Score=64.52  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=79.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+.+.++++...+|+.   ..-.+..++..+  +..+|++.+.++|..    .|.+..++..-+..++..++++.|+.
T Consensus       185 ~~~ai~lle~L~~~~pev---~~~LA~v~l~~~--~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  185 YDEAIELLEKLRERDPEV---AVLLARVYLLMN--EEVEAIRLLNEALKE----NPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             HHHHHHHHHHHHhcCCcH---HHHHHHHHHhcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            456677788887777753   334566777766  688999999999988    88889888888999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .+++++++.|+..+.|+.++.+|..
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHh
Confidence            9999999999999999999998864

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.56  E-value=1.8e-08  Score=71.58  Aligned_cols=81  Identities=27%  Similarity=0.352  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +.+....-.+...+..|  .++.|++.|+.+|.+    +|..+.+|..|+.++++++++..|+.+|..+++++|+..+.|
T Consensus       112 eqa~e~k~~A~eAln~G--~~~~ai~~~t~ai~l----np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y  185 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDG--EFDTAIELFTSAIEL----NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY  185 (377)
T ss_pred             HHHHHHHHHHHHHhcCc--chhhhhccccccccc----CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc
Confidence            34556677888889999  899999999999999    999999999999999999999999999999999999998888


Q ss_pred             HHHHhcc
Q 033417          109 ILCSGSH  115 (119)
Q Consensus       109 ~~~a~~~  115 (119)
                      -.+|.+.
T Consensus       186 kfrg~A~  192 (377)
T KOG1308|consen  186 KFRGYAE  192 (377)
T ss_pred             chhhHHH
Confidence            7776654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.56  E-value=1.7e-07  Score=69.07  Aligned_cols=52  Identities=21%  Similarity=0.149  Sum_probs=48.3

Q ss_pred             CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH---HHHHHhcccC
Q 033417           66 SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV---VILCSGSHPN  117 (119)
Q Consensus        66 ~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a---~~~~a~~~~~  117 (119)
                      .+|+++..++|+|.+++.+|+|++|+..|+++|+++|++..+   ||++|.+|..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~  124 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY  124 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Confidence            379999999999999999999999999999999999999865   9999998854

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.55  E-value=1.2e-06  Score=54.32  Aligned_cols=81  Identities=21%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             ChhhHHHHHHHHHh---cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc---cHHHHHHHHHHHHHhcC
Q 033417           13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~   86 (119)
                      .+++++.+.+....   .+.-..++...|..+...|  ++++|+..+++++..    .|+   +..+....+.++..+|+
T Consensus        17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--~~deA~~~L~~~~~~----~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--RYDEALALLEEALEE----FPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHHCCC
Confidence            34455555555543   2333455556666666666  566666666666555    333   45555555566666666


Q ss_pred             HHHHHHHHHHHHH
Q 033417           87 YRRALTDTEEALK   99 (119)
Q Consensus        87 ~~~A~~~~~~al~   99 (119)
                      +++|+..+-.++-
T Consensus        91 ~~eAl~~~l~~la  103 (120)
T PF12688_consen   91 PKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666665555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.55  E-value=5.9e-07  Score=64.26  Aligned_cols=99  Identities=18%  Similarity=0.074  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...++++...+|++...+.. +..++..|  ++..+.....+++.......|.....+..+|.++...|++++|+..++
T Consensus        62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  138 (355)
T cd05804          62 ALALLEQLLDDYPRDLLALKL-HLGAFGLG--DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR  138 (355)
T ss_pred             HHHHHHHHHHHCCCcHHHHHH-hHHHHHhc--ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344444444445555444443 33333333  333333333333322111256666677788899999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhcccC
Q 033417           96 EALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++|+++.++..+|.+++.
T Consensus       139 ~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804         139 RALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHhhCCCCcHHHHHHHHHHHH
Confidence            9999999999999999988754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.55  E-value=3.4e-07  Score=65.76  Aligned_cols=92  Identities=22%  Similarity=0.209  Sum_probs=83.1

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++++.+.+....+|-++..+.+++..|++..  .|..|...++.||.+    +.....+|..|+.+...+|...+|-.+
T Consensus       114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K--~FA~AE~DC~~AiaL----d~~Y~KAYSRR~~AR~~Lg~~~EAKkD  187 (536)
T KOG4648|consen  114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK--SFAQAEEDCEAAIAL----DKLYVKAYSRRMQARESLGNNMEAKKD  187 (536)
T ss_pred             hHHHHHhhhhhccCCCCccchhhHHHHHHHHH--HHHHHHHhHHHHHHh----hHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            45777788888889989999999999999987  899999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHH
Q 033417           94 TEEALKLCPTNVKVVILC  111 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~  111 (119)
                      |+.+|.+.|.+.+.--..
T Consensus       188 ~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  188 CETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHHHhhCcccHHHHHHH
Confidence            999999999876654443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.55  E-value=3.4e-07  Score=64.71  Aligned_cols=98  Identities=18%  Similarity=0.215  Sum_probs=74.3

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +-+.+.+......+++........+++.+..|.+.+.+|...|++..+.    .+..+.+++.+|.|++.+|+|++|...
T Consensus       148 dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~~~eAe~~  223 (290)
T PF04733_consen  148 DLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGHYEEAEEL  223 (290)
T ss_dssp             HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4455667777777777777777777777777755688899989887666    677888888889999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.++++.+|.++.++.+++.+.
T Consensus       224 L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  224 LEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             HHHHCCC-CCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHH
Confidence            9999999998888888876653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.53  E-value=1.1e-06  Score=69.67  Aligned_cols=96  Identities=17%  Similarity=0.016  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+...+.++...+|..+.........+...|  ++++|+..+++++.-    .|.........|.++..+|++++|+..|
T Consensus        52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G--~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~gdyd~Aiely  125 (822)
T PRK14574         52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAG--RDQEVIDVYERYQSS----MNISSRGLASAARAYRNEKRWDQALALW  125 (822)
T ss_pred             HHHHHHHHHHhhCccchhhHHHHHHHHHHcC--CcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5666677777777766433335555666666  667777777776643    4555555555566777777777777777


Q ss_pred             HHHHHhCCCcHHHHHHHHhccc
Q 033417           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++++.+|+++.+++.++.++.
T Consensus       126 ~kaL~~dP~n~~~l~gLa~~y~  147 (822)
T PRK14574        126 QSSLKKDPTNPDLISGMIMTQA  147 (822)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHh
Confidence            7777777777777776665554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.53  E-value=1.5e-06  Score=55.22  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           16 EKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ....++.+...+|+.   ..+....|..++..|  ++++|+..|.+++...|. .+..+.+..++|.+++..|++++|+.
T Consensus        30 ~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g--~~~~A~~~l~~~~~~~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~  106 (145)
T PF09976_consen   30 AEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG--DYDEAKAALEKALANAPD-PELKPLARLRLARILLQQGQYDEALA  106 (145)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344567777777666   677888999999999  899999999999997211 12235688889999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++. +.-.+-.+.++..+|.+|..
T Consensus       107 ~L~~-~~~~~~~~~~~~~~Gdi~~~  130 (145)
T PF09976_consen  107 TLQQ-IPDEAFKALAAELLGDIYLA  130 (145)
T ss_pred             HHHh-ccCcchHHHHHHHHHHHHHH
Confidence            9976 33344456777777877753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.51  E-value=5e-07  Score=71.79  Aligned_cols=100  Identities=15%  Similarity=0.014  Sum_probs=83.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---------------CcccHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---------------DSENSVLYANR   77 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~   77 (119)
                      .+++....+.....+|+....++..|..++..+  ++.++...  .++.+.+..               .+.+..+++.+
T Consensus        47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~--~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~L  122 (906)
T PRK14720         47 TDEAKDICEEHLKEHKKSISALYISGILSLSRR--PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTL  122 (906)
T ss_pred             HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc--chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHH
Confidence            556777788888889999999999999999988  78777766  666652221               23444799999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |.||-++|++++|+..++++++++|+|+.++.++|..|.
T Consensus       123 A~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a  161 (906)
T PRK14720        123 AEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE  161 (906)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=1.6e-07  Score=69.62  Aligned_cols=94  Identities=21%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +..-.+.+..++.=++.++.+.|+..|..|  ++++|.+.|.+++.-    +.....+++|.|..+..+|+.++|+.+|-
T Consensus       475 aqqyad~aln~dryn~~a~~nkgn~~f~ng--d~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~  548 (840)
T KOG2003|consen  475 AQQYADIALNIDRYNAAALTNKGNIAFANG--DLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFL  548 (840)
T ss_pred             HHHHHHHHhcccccCHHHhhcCCceeeecC--cHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence            334455555666667788889999999888  899999999999888    78888888888888888888888888887


Q ss_pred             HHHHhCCCcHHHHHHHHhcc
Q 033417           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.-.+--++.+.++.++.+|
T Consensus       549 klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  549 KLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHH
Confidence            76555555677777666655

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.49  E-value=7.2e-07  Score=68.94  Aligned_cols=87  Identities=20%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHH--HHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAID--CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      ..++...+..+..++|++.......|.++.+.|  +..-|..  .+..++++    +|.++.+|+.+|.++.++|+.++|
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~~L~dalr~----dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  700 LEEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRSLLSDALRL----DPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccchHHH
Confidence            346778889999999999999999999999999  6666666  99999999    999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcH
Q 033417           91 LTDTEEALKLCPTNV  105 (119)
Q Consensus        91 ~~~~~~al~l~p~~~  105 (119)
                      ..+|..++++++.+|
T Consensus       774 aecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  774 AECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHhhccCCC
Confidence            999999999998765

>PRK11906 transcriptional regulator; Provisional

Probab=98.47  E-value=2e-06  Score=63.68  Aligned_cols=100  Identities=8%  Similarity=-0.059  Sum_probs=87.4

Q ss_pred             CChhhHHHHHHHH---HhcHHHHHHHHHHhHHHHHhc-------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417           12 KTESEKADLDAIA---ALKESAAIELKEKGNEYVKKG-------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN   81 (119)
Q Consensus        12 ~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~g-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~   81 (119)
                      ..+.+...+.++.   .++|..+.++.-++.+++..-       ..+-.+|.+.-.+|+++    +|.++-++..+|.+.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~~Da~a~~~~g~~~  348 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TTVDGKILAIMGLIT  348 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence            3456777889999   999999999999999987651       11456788999999999    999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           82 LLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ...++++.|+..+++++.++|+...+++..|.++
T Consensus       349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999988743

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.47  E-value=9.9e-07  Score=59.85  Aligned_cols=84  Identities=19%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ++..+..++++|+.+=..|  -+.-|--.+++++.+    .|..+.+++.+|.-+..-|+|+.|.+.|+-++++||.+.-
T Consensus        61 ~eeRA~l~fERGvlYDSlG--L~~LAR~DftQaLai----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y  134 (297)
T COG4785          61 DEERAQLLFERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  134 (297)
T ss_pred             hHHHHHHHHHhcchhhhhh--HHHHHhhhhhhhhhc----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence            4566778889999888888  788888889999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q 033417          107 VVILCSGSHP  116 (119)
Q Consensus       107 a~~~~a~~~~  116 (119)
                      ++.++|.+++
T Consensus       135 a~lNRgi~~Y  144 (297)
T COG4785         135 AHLNRGIALY  144 (297)
T ss_pred             HHhccceeee
Confidence            9999988754

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.45  E-value=6.3e-07  Score=49.14  Aligned_cols=53  Identities=19%  Similarity=0.290  Sum_probs=47.4

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS   71 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~   71 (119)
                      .+++...++.+...+|+++.++...|.+++..|  ++++|+..|+++++.    .|+++
T Consensus        13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~a~~~----~P~~p   65 (65)
T PF13432_consen   13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG--RYDEALAYYERALEL----DPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCC
Confidence            457889999999999999999999999999999  999999999999999    88764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.44  E-value=3.2e-07  Score=44.37  Aligned_cols=33  Identities=36%  Similarity=0.689  Sum_probs=30.7

Q ss_pred             HHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           55 CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        55 ~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .|+++|++    +|+++.+|+++|.++...|++++|+
T Consensus         1 ~y~kAie~----~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIEL----NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHH----CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            37899999    9999999999999999999999986

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.42  E-value=1.7e-06  Score=48.34  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .+++.+.++.+..++|+++..+...|.+++..|  +|.+|+..++++++.    .|+++.+...++.
T Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~l~~~l~~----~p~~~~~~~~~a~   71 (73)
T PF13371_consen   11 YEEALEVLERALELDPDDPELWLQRARCLFQLG--RYEEALEDLERALEL----SPDDPDARALRAM   71 (73)
T ss_pred             HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHh
Confidence            467889999999999999999999999999999  899999999999999    8888887766543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=5.5e-07  Score=69.31  Aligned_cols=82  Identities=12%  Similarity=0.049  Sum_probs=67.7

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ++.+-+..|...+..+  +|.++..+++.++++    +|.....|+++|.|.+++++++.|..+|..++.++|++..+|.
T Consensus       484 sarA~r~~~~~~~~~~--~fs~~~~hle~sl~~----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn  557 (777)
T KOG1128|consen  484 SARAQRSLALLILSNK--DFSEADKHLERSLEI----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN  557 (777)
T ss_pred             hHHHHHhhccccccch--hHHHHHHHHHHHhhc----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh
Confidence            3444455555566656  899999999999999    8999999999999999999999999999999999999999999


Q ss_pred             HHHhcccC
Q 033417          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      +++.+|+.
T Consensus       558 Nls~ayi~  565 (777)
T KOG1128|consen  558 NLSTAYIR  565 (777)
T ss_pred             hhhHHHHH
Confidence            88887753

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.40  E-value=1.1e-06  Score=67.00  Aligned_cols=94  Identities=16%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ..+.++.+..-.|++.+.+.-.|..+...|  +-++|......++..    ++....+|--.|.++..-++|++||.+|+
T Consensus        26 gLK~~~~iL~k~~eHgeslAmkGL~L~~lg--~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~   99 (700)
T KOG1156|consen   26 GLKLIKQILKKFPEHGESLAMKGLTLNCLG--KKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCYR   99 (700)
T ss_pred             HHHHHHHHHHhCCccchhHHhccchhhccc--chHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence            345677777788999999999999999999  899999999999998    99999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhcc
Q 033417           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      .|+.++|+|...++-++...
T Consensus       100 nAl~~~~dN~qilrDlslLQ  119 (700)
T KOG1156|consen  100 NALKIEKDNLQILRDLSLLQ  119 (700)
T ss_pred             HHHhcCCCcHHHHHHHHHHH
Confidence            99999999999998877543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.38  E-value=3.3e-07  Score=67.65  Aligned_cols=96  Identities=20%  Similarity=0.239  Sum_probs=88.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -+.++....++..++|..+..+-+++..+++.+  +|..|+....++|+.    +|....+|+.+|.+.+.++++.+|+.
T Consensus        20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e--~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~m~l~~~~~A~~   93 (476)
T KOG0376|consen   20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVE--SFGGALHDALKAIEL----DPTYIKAYVRRGTAVMALGEFKKALL   93 (476)
T ss_pred             HHHHHHHHHHHHhcCCcceeeechhhhhheeec--hhhhHHHHHHhhhhc----CchhhheeeeccHHHHhHHHHHHHHH
Confidence            346778889999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhc
Q 033417           93 DTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      +++....+.|+.+.+......|
T Consensus        94 ~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   94 DLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHhhhcCcCcHHHHHHHHHH
Confidence            9999999999999887665443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=6.4e-06  Score=56.87  Aligned_cols=96  Identities=15%  Similarity=0.092  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++++.++.+..-+|.+-..+..+--..-..|  .-.+||+.+...++.    -+.+..+|..++.+|+.+|.|++|.-++
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~G--K~l~aIk~ln~YL~~----F~~D~EAW~eLaeiY~~~~~f~kA~fCl  177 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQG--KNLEAIKELNEYLDK----FMNDQEAWHELAEIYLSEGDFEKAAFCL  177 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHcC--CcHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            3444444444445554444444444444444  234555555555555    6788899999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHhccc
Q 033417           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++-++|-++--+.++|.+++
T Consensus       178 EE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  178 EELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHH
Confidence            9999999999988888887764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.36  E-value=8.1e-07  Score=60.28  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      =+...++...+++|+.+..+.-.|.-+...|  +|+.|.+.|...+++    +|..--++.|||..++--|+|.-|..++
T Consensus        83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~--~fdaa~eaFds~~EL----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~  156 (297)
T COG4785          83 LARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRYKLAQDDL  156 (297)
T ss_pred             HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc--cchHHHHHhhhHhcc----CCcchHHHhccceeeeecCchHhhHHHH
Confidence            3556788889999999999999999999999  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHHhCCCcH
Q 033417           95 EEALKLCPTNV  105 (119)
Q Consensus        95 ~~al~l~p~~~  105 (119)
                      .+-.+-||++|
T Consensus       157 ~~fYQ~D~~DP  167 (297)
T COG4785         157 LAFYQDDPNDP  167 (297)
T ss_pred             HHHHhcCCCCh
Confidence            99999998876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.36  E-value=1.2e-05  Score=51.04  Aligned_cols=89  Identities=22%  Similarity=0.259  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHhc---HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC------
Q 033417           16 EKADLDAIAALK---ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN------   86 (119)
Q Consensus        16 ~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~------   86 (119)
                      +++.++.+....   |-...+...+|-.+|+.+  +|.+|+..+++-|++.|. +|.-+-+++.+|.+++....      
T Consensus        29 A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~--~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~gL~~~~~~~~~~~~~  105 (142)
T PF13512_consen   29 AIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG--DYEEAIAAYDRFIRLHPT-HPNVDYAYYMRGLSYYEQDEGSLQSF  105 (142)
T ss_pred             HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHHHhhhHHhhh
Confidence            444455554443   335677889999999999  999999999999999666 56667899999999999887      


Q ss_pred             ---------HHHHHHHHHHHHHhCCCcHHH
Q 033417           87 ---------YRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        87 ---------~~~A~~~~~~al~l~p~~~~a  107 (119)
                               ..+|+.+++++++.-|++.-+
T Consensus       106 ~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  106 FRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                     899999999999999988654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.36  E-value=3.4e-06  Score=66.71  Aligned_cols=82  Identities=17%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +-.++.++..|..+...|  +|++|..+|.+++..    ++++ ...++.+|+.++..|.++.|+.+|.++++..|++.+
T Consensus       304 ~~~aes~Y~~gRs~Ha~G--d~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e  377 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQG--DFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE  377 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence            344555666666666666  666666666666666    5555 455566666666666666666666666666666666


Q ss_pred             HHHHHHhcc
Q 033417          107 VVILCSGSH  115 (119)
Q Consensus       107 a~~~~a~~~  115 (119)
                      +...+|..|
T Consensus       378 tm~iLG~Ly  386 (1018)
T KOG2002|consen  378 TMKILGCLY  386 (1018)
T ss_pred             HHHHHHhHH
Confidence            666666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.34  E-value=9.7e-06  Score=61.55  Aligned_cols=101  Identities=13%  Similarity=0.011  Sum_probs=78.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      ..++...++++..++|+.+.++..++.++....      .++...+.....+++.+ +. +|.++.+|.-+|......|+
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~-~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PE-LNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-cc-CcCChHHHHHHHHHHHhcCC
Confidence            456778899999999999999999888776542      00244555556665553 11 56667889999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           87 YRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++|...+++++.++| +..+|..+|.++.
T Consensus       436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~  464 (517)
T PRK10153        436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYE  464 (517)
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            9999999999999999 5889999998764

>TIGR00540 hemY_coli hemY protein

Probab=98.32  E-value=8e-06  Score=60.14  Aligned_cols=99  Identities=12%  Similarity=0.138  Sum_probs=80.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .+.+.+.+.+.....|.....+.-.|..+...|  +++.|...+.++.+.    .|+.. .+....+.+++..|++++|+
T Consensus       100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540       100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--DEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            445666777777777776777788888888888  899999999999888    77764 45666788999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..+++.++..|+++.++..++.++..
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~  199 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999998888887653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=7.8e-06  Score=60.02  Aligned_cols=92  Identities=11%  Similarity=0.001  Sum_probs=83.4

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+++...++|....+-...+..+..+|  .+..++..+++++..    .| +..++..+|.++...+.+++|++
T Consensus       420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg--~~~D~i~LLe~~L~~----~~-D~~LH~~Lgd~~~A~Ne~Q~am~  492 (564)
T KOG1174|consen  420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEG--PTKDIIKLLEKHLII----FP-DVNLHNHLGDIMRAQNEPQKAME  492 (564)
T ss_pred             HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC--ccchHHHHHHHHHhh----cc-ccHHHHHHHHHHHHhhhHHHHHH
Confidence            467888999999999999999999999999999  799999999999998    55 55679999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHH
Q 033417           93 DTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~  111 (119)
                      .|..+|.++|.+..+.-.+
T Consensus       493 ~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  493 YYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             HHHHHHhcCccchHHHHHH
Confidence            9999999999998776554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.31  E-value=9.6e-06  Score=56.29  Aligned_cols=81  Identities=16%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---VKVV  108 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~  108 (119)
                      ..+++.+..+++.|  +|..|...|..-|..-|. .+-.+.+++.+|.+++.+|+|++|...|..+++-.|++   ++++
T Consensus       142 ~~~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         142 TKLYNAALDLYKSG--DYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             hHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            33777888888887  788888888888877333 34456777788888888888888888888887766644   5677


Q ss_pred             HHHHhcc
Q 033417          109 ILCSGSH  115 (119)
Q Consensus       109 ~~~a~~~  115 (119)
                      +.+|.+.
T Consensus       219 lKlg~~~  225 (262)
T COG1729         219 LKLGVSL  225 (262)
T ss_pred             HHHHHHH
Confidence            7777765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.30  E-value=1.9e-06  Score=41.14  Aligned_cols=33  Identities=39%  Similarity=0.518  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+|+.+|.++..+|++++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            468889999999999999999999999998854

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.30  E-value=2.9e-06  Score=46.75  Aligned_cols=61  Identities=18%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .+++...+.++...+|++...+...|.++++.|  ++++|...+.+++..    +|+++..+.-++.
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~----~~~~~~~~~l~a~   67 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG--QYDEAEELLERLLKQ----DPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---HHHHHHHHHCCHGG----GTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCHHHHHHHHhc
Confidence            457889999999999999999999999999999  999999999999999    8988877766654

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.29  E-value=8.2e-06  Score=51.82  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=64.2

Q ss_pred             ChhhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417           13 TESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+++...+..+....|+.   ..+...++.+++..|  +|++|+..+.. +.-    .+..+.++..+|.+++..|++++
T Consensus        64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~--~~d~Al~~L~~-~~~----~~~~~~~~~~~Gdi~~~~g~~~~  136 (145)
T PF09976_consen   64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQG--QYDEALATLQQ-IPD----EAFKALAAELLGDIYLAQGDYDE  136 (145)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHh-ccC----cchHHHHHHHHHHHHHHCCCHHH
Confidence            346777777777755332   456778999999999  89999999966 333    57778899999999999999999


Q ss_pred             HHHHHHHHH
Q 033417           90 ALTDTEEAL   98 (119)
Q Consensus        90 A~~~~~~al   98 (119)
                      |+..|+++|
T Consensus       137 A~~~y~~Al  145 (145)
T PF09976_consen  137 ARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhC
Confidence            999999875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.27  E-value=8.7e-06  Score=59.79  Aligned_cols=82  Identities=18%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++++...++...+.+|+++..+...|..+.+.+  +|.+|.+.|+++++.    .|+... +..++.++.++|+.++|..
T Consensus       310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~--~~~~A~~~le~al~~----~P~~~~-~~~La~~~~~~g~~~~A~~  382 (398)
T PRK10747        310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG--EWQEASLAFRAALKQ----RPDAYD-YAWLADALDRLHKPEEAAA  382 (398)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence            455677777777888888888888888888887  788888888888888    777655 4457888888888888888


Q ss_pred             HHHHHHHhC
Q 033417           93 DTEEALKLC  101 (119)
Q Consensus        93 ~~~~al~l~  101 (119)
                      +|++++.+.
T Consensus       383 ~~~~~l~~~  391 (398)
T PRK10747        383 MRRDGLMLT  391 (398)
T ss_pred             HHHHHHhhh
Confidence            888887653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=6.8e-06  Score=60.38  Aligned_cols=79  Identities=14%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .+++..+.+....+|.++..+...+..+.+.+  +++.|+...++++.+    .|.+...|+.++.||..+|++++|+..
T Consensus       217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  217 VEAIRLLNEALKENPQDSELLNLQAEFLLSKK--KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            46778888888889999999999999999988  899999999999999    999999999999999999999999987


Q ss_pred             HHHHH
Q 033417           94 TEEAL   98 (119)
Q Consensus        94 ~~~al   98 (119)
                      .+-+-
T Consensus       291 LNs~P  295 (395)
T PF09295_consen  291 LNSCP  295 (395)
T ss_pred             HhcCc
Confidence            77543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.23  E-value=6.7e-06  Score=54.06  Aligned_cols=66  Identities=18%  Similarity=0.141  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----------NYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----------~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      -|+.|...++.....    +|.++..+.+=|.+++.+.          -+++|++-+++||.|+|+...+++.+|.+|+.
T Consensus         6 ~FE~ark~aea~y~~----nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    6 FFEHARKKAEAAYAK----NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh----CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            378888999999999    9999999999999988763          35788999999999999999999999999853

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.23  E-value=3.6e-06  Score=42.83  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=38.8

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      ..+...|..+...|  ++++|+..|+++++.    +|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G--~~~~A~~~~~~~l~~----~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLG--QPDEAERLLRRALAL----DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCHHHHHHhhh
Confidence            56788999999999  999999999999999    9999999998875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.23  E-value=2.2e-05  Score=54.27  Aligned_cols=88  Identities=17%  Similarity=0.114  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHhcHHHHH---HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-----
Q 033417           15 SEKADLDAIAALKESAAI---ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-----   86 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-----   86 (119)
                      ++.+.++.+....|....   +....|..+++.+  +|++|+..+++.+...|. +|..+.+++.+|.++..++.     
T Consensus        50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~--~y~~A~~~~e~fi~~~P~-~~~~~~a~Y~~g~~~~~~~~~~~~~  126 (243)
T PRK10866         50 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPT-HPNIDYVLYMRGLTNMALDDSALQG  126 (243)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCcC-CCchHHHHHHHHHhhhhcchhhhhh
Confidence            456677777777765443   4588999999999  999999999999999666 66778899999999766541     


Q ss_pred             -------------HHHHHHHHHHHHHhCCCcH
Q 033417           87 -------------YRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        87 -------------~~~A~~~~~~al~l~p~~~  105 (119)
                                   ..+|+..++..++.-|++.
T Consensus       127 ~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        127 FFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             ccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence                         3578999999999999874

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.21  E-value=1.5e-05  Score=63.40  Aligned_cols=86  Identities=13%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+++...-.|.....+...|..+...|  +|++|+..|+++++.    +|+++.++..++..+...++.++|+.
T Consensus        84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--dyd~Aiely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574         84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEK--RWDQALALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            345556666655333444555555566666666  677777777777777    66666666666666666677777777


Q ss_pred             HHHHHHHhCCCc
Q 033417           93 DTEEALKLCPTN  104 (119)
Q Consensus        93 ~~~~al~l~p~~  104 (119)
                      .+++++..+|++
T Consensus       158 ~l~~l~~~dp~~  169 (822)
T PRK14574        158 QATELAERDPTV  169 (822)
T ss_pred             HHHHhcccCcch
Confidence            766666666653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.21  E-value=1.1e-05  Score=59.88  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      |....+.+..+...+..|  .++.|...++..+..    .|+|+.++..++.+++..++..+|++.+++++.++|..+-.
T Consensus       303 ~~~~aa~YG~A~~~~~~~--~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         303 RGGLAAQYGRALQTYLAG--QYDEALKLLQPLIAA----QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             ccchHHHHHHHHHHHHhc--ccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence            567788899999999999  899999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccC
Q 033417          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      .+.+|++|++
T Consensus       377 ~~~~a~all~  386 (484)
T COG4783         377 QLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>TIGR00540 hemY_coli hemY protein

Probab=98.20  E-value=1.7e-05  Score=58.47  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHHhcHHHH--HHHHHHhHHHHHhchHhHHHHHHHHH--HHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417           14 ESEKADLDAIAALKESAA--IELKEKGNEYVKKGKKHYYDAIDCYT--RAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+..+.+++..+.+|+++  ..+...|..+++.|  +|++|.+.|+  ++++.    .|+... +..+|.++.++|+.++
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~--~~~~A~~~le~a~a~~~----~p~~~~-~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG--EFIEAADAFKNVAACKE----QLDAND-LAMAADAFDQAGDKAE  388 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc--cHHHHHHHHHHhHHhhc----CCCHHH-HHHHHHHHHHcCCHHH
Confidence            344555556666666666  56666666666666  6666666666  45555    554444 3366666666666666


Q ss_pred             HHHHHHHHHH
Q 033417           90 ALTDTEEALK   99 (119)
Q Consensus        90 A~~~~~~al~   99 (119)
                      |...+++++.
T Consensus       389 A~~~~~~~l~  398 (409)
T TIGR00540       389 AAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=9.3e-06  Score=55.69  Aligned_cols=80  Identities=14%  Similarity=0.039  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .++..+.++..++|.-+..+.+.+.++++..  +|+.+.....+++++    .|+.+..++.+|.+.+....|.+||..+
T Consensus        28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~--~~~~v~~dcrralql----~~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   28 DAIDCYSRAICINPTVASYYTNRALCHLKLK--HWEPVEEDCRRALQL----DPNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hHHHHHHHHHhcCCCcchhhhhHHHHHHHhh--hhhhhhhhHHHHHhc----ChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            4567888999999999999999999999987  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHHh
Q 033417           95 EEALKL  100 (119)
Q Consensus        95 ~~al~l  100 (119)
                      .++..+
T Consensus       102 qra~sl  107 (284)
T KOG4642|consen  102 QRAYSL  107 (284)
T ss_pred             HHHHHH
Confidence            999765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.19  E-value=3.3e-05  Score=48.72  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+++.+.+..-+-|+.+.+|.+++..+--.|  +.++|+..+.+++++.......--.+|..||..|..+|+-+.|..+
T Consensus        60 d~AlE~F~qal~l~P~raSayNNRAQa~RLq~--~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D  137 (175)
T KOG4555|consen   60 DGALELFGQALCLAPERASAYNNRAQALRLQG--DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD  137 (175)
T ss_pred             HHHHHHHHHHHHhcccchHhhccHHHHHHHcC--ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh
Confidence            45677788888888999999999999999888  8999999999999993222223345789999999999999999999


Q ss_pred             HHHHHHhCCCcH
Q 033417           94 TEEALKLCPTNV  105 (119)
Q Consensus        94 ~~~al~l~p~~~  105 (119)
                      |..+-++...+.
T Consensus       138 Fe~AA~LGS~FA  149 (175)
T KOG4555|consen  138 FEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHHhCCHHH
Confidence            999988865443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.19  E-value=4.9e-05  Score=52.50  Aligned_cols=85  Identities=24%  Similarity=0.210  Sum_probs=72.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV---KV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a  107 (119)
                      +..|++.|...++.|  +|++|++.|+.....-|- .|....+....+.++++.+++++|+...++=+.+.|+++   -+
T Consensus        34 ~~~LY~~g~~~L~~g--n~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          34 ASELYNEGLTELQKG--NYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            788999999999999  999999999999887333 445567888899999999999999999999999998775   56


Q ss_pred             HHHHHhcccCC
Q 033417          108 VILCSGSHPNQ  118 (119)
Q Consensus       108 ~~~~a~~~~~~  118 (119)
                      +|.+|.+++..
T Consensus       111 ~YlkgLs~~~~  121 (254)
T COG4105         111 YYLKGLSYFFQ  121 (254)
T ss_pred             HHHHHHHHhcc
Confidence            77778776544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.17  E-value=8.5e-05  Score=46.04  Aligned_cols=81  Identities=25%  Similarity=0.213  Sum_probs=67.2

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT---NVKVV  108 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~  108 (119)
                      ..+++.|..+-..|  +.++|+..|++++..... .+....++..+|.++..+|++++|+..+++++.-.|+   +....
T Consensus         2 ~~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    2 RALYELAWAHDSLG--REEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             chHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            46788999999999  899999999999997322 3445679999999999999999999999999998887   66665


Q ss_pred             HHHHhcc
Q 033417          109 ILCSGSH  115 (119)
Q Consensus       109 ~~~a~~~  115 (119)
                      ..++.++
T Consensus        79 ~f~Al~L   85 (120)
T PF12688_consen   79 VFLALAL   85 (120)
T ss_pred             HHHHHHH
Confidence            5555544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.17  E-value=2.8e-05  Score=59.06  Aligned_cols=80  Identities=19%  Similarity=0.128  Sum_probs=70.6

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      +++.+.-...++...|  ++++|+..+......    -.+.....-.+|.+++++|++++|...|+..|+.+|+|..-|.
T Consensus         3 ~SE~lLY~~~il~e~g--~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~   76 (517)
T PF12569_consen    3 HSELLLYKNSILEEAG--DYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR   76 (517)
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            4566677778888888  899999999988777    7888899999999999999999999999999999999999888


Q ss_pred             HHHhcc
Q 033417          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .+..+.
T Consensus        77 ~L~~~~   82 (517)
T PF12569_consen   77 GLEEAL   82 (517)
T ss_pred             HHHHHH
Confidence            887765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.16  E-value=7.1e-06  Score=39.16  Aligned_cols=34  Identities=35%  Similarity=0.637  Sum_probs=29.9

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN   70 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~   70 (119)
                      +..|..+|.+++..|  ++++|+..|+++|++    +|++
T Consensus         1 a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLG--DYEEALEYYQRALEL----DPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTH
T ss_pred             CHHHHHHHHHHHHhC--CchHHHHHHHHHHHH----CcCC
Confidence            467999999999999  999999999999999    7753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=1e-05  Score=62.54  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=82.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -+++.++++....++|-....|+..|.++.+.+  +++.|...|.+.+.+    +|++...|+|++.+|.++|+-.+|..
T Consensus       501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle--k~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLE--KEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             HHHHHHHHHHHhhcCccchhHHHhccHHHHHHh--hhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHH
Confidence            346778899999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHH
Q 033417           93 DTEEALKLCPTNVKVV  108 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~  108 (119)
                      .++++++-+-.+++.|
T Consensus       575 ~l~EAlKcn~~~w~iW  590 (777)
T KOG1128|consen  575 KLKEALKCNYQHWQIW  590 (777)
T ss_pred             HHHHHhhcCCCCCeee
Confidence            9999999876666554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.14  E-value=1.1e-05  Score=57.76  Aligned_cols=84  Identities=14%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      +.+.......| .++.+.-+..+|.+..  ....|+..|.+.++.    -|.+++.+...+.++..++++++|++.|+.+
T Consensus       244 kqlqssL~q~~-~~dTfllLskvY~rid--QP~~AL~~~~~gld~----fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v  316 (478)
T KOG1129|consen  244 KQLQSSLTQFP-HPDTFLLLSKVYQRID--QPERALLVIGEGLDS----FPFDVTYLLGQARIHEAMEQQEDALQLYKLV  316 (478)
T ss_pred             HHHHHHhhcCC-chhHHHHHHHHHHHhc--cHHHHHHHHhhhhhc----CCchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence            34444444333 4666666677777766  677777777777777    7777777777777777888888888888888


Q ss_pred             HHhCCCcHHHH
Q 033417           98 LKLCPTNVKVV  108 (119)
Q Consensus        98 l~l~p~~~~a~  108 (119)
                      ++++|.|+++.
T Consensus       317 lk~~~~nvEai  327 (478)
T KOG1129|consen  317 LKLHPINVEAI  327 (478)
T ss_pred             HhcCCccceee
Confidence            87777776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.14  E-value=2.8e-05  Score=55.49  Aligned_cols=95  Identities=16%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHhcH-----HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417           15 SEKADLDAIAALKE-----SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        15 ~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      ++++...++.++.+     ..+.-+.+.+..+..+.  +++.|...+.+|+.-    +|.++.+-..+|.+.+..|+|+.
T Consensus       159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~--~~d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~  232 (389)
T COG2956         159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS--DVDRARELLKKALQA----DKKCVRASIILGRVELAKGDYQK  232 (389)
T ss_pred             HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhh----CccceehhhhhhHHHHhccchHH
Confidence            44444444444432     35666777777777766  788888888888887    78887777778888888888888


Q ss_pred             HHHHHHHHHHhCCCc-HHHHHHHHhcc
Q 033417           90 ALTDTEEALKLCPTN-VKVVILCSGSH  115 (119)
Q Consensus        90 A~~~~~~al~l~p~~-~~a~~~~a~~~  115 (119)
                      |+..++.+++-||++ +.+.-.+..||
T Consensus       233 AV~~~e~v~eQn~~yl~evl~~L~~~Y  259 (389)
T COG2956         233 AVEALERVLEQNPEYLSEVLEMLYECY  259 (389)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            888888888888776 34444444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.14  E-value=4.7e-05  Score=55.96  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVL-YANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ...+.-.+....+.|  +++.|...|.++.+.    .|+.... ....+..+...|++++|+..+++.++.+|+++.++.
T Consensus       118 ~l~~llaA~aA~~~g--~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~  191 (398)
T PRK10747        118 VVNYLLAAEAAQQRG--DEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLR  191 (398)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            344444455558888  899999999999988    7776533 334488889999999999999999999999999998


Q ss_pred             HHHhcccC
Q 033417          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      .++.+|..
T Consensus       192 ll~~~~~~  199 (398)
T PRK10747        192 LAEQAYIR  199 (398)
T ss_pred             HHHHHHHH
Confidence            88877653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.13  E-value=1.8e-05  Score=41.98  Aligned_cols=40  Identities=23%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +.++.+|..++++|+|.+|..+++.+|+++|+|.++..-.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3567789999999999999999999999999998886544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=4.4e-05  Score=53.67  Aligned_cols=86  Identities=16%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHH-hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVK-KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .+...+..+..+.|++++.+...|..++. .|..+-.++...+++++.+    +|.+..+.+.+|..++..|+|.+|+..
T Consensus       174 ~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----D~~~iral~lLA~~afe~g~~~~A~~~  249 (287)
T COG4235         174 DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----DPANIRALSLLAFAAFEQGDYAEAAAA  249 (287)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHcccHHHHHHH
Confidence            46678999999999999999999988853 3333668889999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCc
Q 033417           94 TEEALKLCPTN  104 (119)
Q Consensus        94 ~~~al~l~p~~  104 (119)
                      ++..+++.|.+
T Consensus       250 Wq~lL~~lp~~  260 (287)
T COG4235         250 WQMLLDLLPAD  260 (287)
T ss_pred             HHHHHhcCCCC
Confidence            99999988754

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.10  E-value=1.2e-05  Score=38.14  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=29.7

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN   70 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~   70 (119)
                      +..+..+|..++..|  +|++|+..|++++.+    +|++
T Consensus         1 a~~~~~lg~~~~~~~--~~~~A~~~~~~al~l----~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLG--NYEEAIEYFEKALEL----DPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTS
T ss_pred             CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CcCC
Confidence            467899999999999  999999999999999    7753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.09  E-value=5.2e-05  Score=57.36  Aligned_cols=84  Identities=18%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHHH
Q 033417           15 SEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVNL   82 (119)
Q Consensus        15 ~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~   82 (119)
                      ++...+..+..+        .|.-+..+...|..+...+  .|.+|+..|.+|+.+..    ..+|.-+.++.++|..|.
T Consensus       217 ~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~  294 (508)
T KOG1840|consen  217 KAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY  294 (508)
T ss_pred             HHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            444555555555        7777777888999999999  89999999999998843    347788899999999999


Q ss_pred             HhcCHHHHHHHHHHHHHh
Q 033417           83 LLGNYRRALTDTEEALKL  100 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l  100 (119)
                      +.|++.+|..+|++|++|
T Consensus       295 ~~GKf~EA~~~~e~Al~I  312 (508)
T KOG1840|consen  295 KQGKFAEAEEYCERALEI  312 (508)
T ss_pred             ccCChHHHHHHHHHHHHH
Confidence            999999999999999987

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=9e-06  Score=58.28  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             HHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           21 DAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ....+.+|.+.++..-.|.-+|-.+  +.+-|++.|++.+.+    .-.++.++.|+|.|.+--++++-++..+.+++..
T Consensus       314 k~vlk~~~~nvEaiAcia~~yfY~~--~PE~AlryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst  387 (478)
T KOG1129|consen  314 KLVLKLHPINVEAIACIAVGYFYDN--NPEMALRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST  387 (478)
T ss_pred             HHHHhcCCccceeeeeeeeccccCC--ChHHHHHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence            3333444444444444444444444  445555555555555    5556677777777777777777777777777764


Q ss_pred             --CCC-cHHHHHHHHhcc
Q 033417          101 --CPT-NVKVVILCSGSH  115 (119)
Q Consensus       101 --~p~-~~~a~~~~a~~~  115 (119)
                        +|+ -.+.||++|.+.
T Consensus       388 at~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  388 ATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             ccCcchhhhhhhccceeE
Confidence              233 357777777654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=9.1e-05  Score=51.29  Aligned_cols=73  Identities=23%  Similarity=0.292  Sum_probs=65.7

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ....+.+...++...|  +|-++++..+..|..    .|.+..+|+.||.++....+..+|..++..+|+++|.-..+-
T Consensus       229 ~tpLllNy~QC~L~~~--e~yevleh~seiL~~----~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  229 ITPLLLNYCQCLLKKE--EYYEVLEHCSEILRH----HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             hhHHHHhHHHHHhhHH--HHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            3445778889999988  999999999999999    999999999999999999999999999999999999655443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.02  E-value=4.5e-05  Score=61.01  Aligned_cols=73  Identities=16%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             hHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           38 GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +....+..  +|++|++...++++.    +|++..++..+|.++..+|. .++|-+.|..+.+++|++.-||-.++..|.
T Consensus         9 Ak~al~nk--~YeealEqskkvLk~----dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye   82 (1238)
T KOG1127|consen    9 AKDALRNK--EYEEALEQSKKVLKE----DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYE   82 (1238)
T ss_pred             HHHHHhhc--cHHHHHHHHHHHHhc----CCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence            34445544  899999999999999    99999999999999999998 999999999999999999999999888764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.01  E-value=5.8e-05  Score=53.46  Aligned_cols=89  Identities=18%  Similarity=0.128  Sum_probs=72.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH-HHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY-RRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~A~   91 (119)
                      ..++.-.++.+....+..+..+...+.+.+..|  +|++|...+.+++..    +|.++.++.|+..|...+|+. +.+-
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~--~~~eAe~~L~~al~~----~~~~~d~LaNliv~~~~~gk~~~~~~  256 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG--HYEEAEELLEEALEK----DPNDPDTLANLIVCSLHLGKPTEAAE  256 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT---HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhCCChhHHH
Confidence            456667888887777888899999999999999  899999999999999    999999999999999999998 5555


Q ss_pred             HHHHHHHHhCCCcHHH
Q 033417           92 TDTEEALKLCPTNVKV  107 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a  107 (119)
                      ....+....+|+++..
T Consensus       257 ~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  257 RYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHhCCCChHH
Confidence            6777777899988754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.6e-05  Score=56.13  Aligned_cols=64  Identities=14%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +|..|+.+-.++|..    +|.+..++...|..+..+|+.++|+-.|+.+..+.|...+.|-.+-.+|
T Consensus       315 ~~~rAL~~~eK~I~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY  378 (564)
T KOG1174|consen  315 KFERALNFVEKCIDS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY  378 (564)
T ss_pred             hHHHHHHHHHHHhcc----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            444445544555554    4555555555555555555555555555555555555444444444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.99  E-value=0.00013  Score=48.95  Aligned_cols=90  Identities=19%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             hhhHHHHHHHHHhcH---HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC----
Q 033417           14 ESEKADLDAIAALKE---SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN----   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~----   86 (119)
                      .+++..++.+....|   -...+....|..+++.|  +|..|+..+++-+..-|. .|..+.+++.+|.+++.+..    
T Consensus        22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~--~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~~~~~~~~~~   98 (203)
T PF13525_consen   22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG--DYEEAIAAYERFIKLYPN-SPKADYALYMLGLSYYKQIPGILR   98 (203)
T ss_dssp             HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHHHHhCccchh
Confidence            356677777777644   46778899999999999  999999999999999555 55667899999999877643    


Q ss_pred             -------HHHHHHHHHHHHHhCCCcHH
Q 033417           87 -------YRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        87 -------~~~A~~~~~~al~l~p~~~~  106 (119)
                             ..+|+..++..++.-|++..
T Consensus        99 ~~~D~~~~~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen   99 SDRDQTSTRKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred             cccChHHHHHHHHHHHHHHHHCcCchH
Confidence                   45899999999999998753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.99  E-value=6.8e-05  Score=56.96  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      .++-++..+-..|  ++++|+...+++|+.    .|+.+.+|+..|.++-+.|++.+|....+.+..+|+.+-..-..
T Consensus       196 ~~~~lAqhyd~~g--~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK  267 (517)
T PF12569_consen  196 TLYFLAQHYDYLG--DYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK  267 (517)
T ss_pred             HHHHHHHHHHHhC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence            4577788888888  999999999999999    99999999999999999999999999999999999866544333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.98  E-value=6.2e-06  Score=46.71  Aligned_cols=50  Identities=24%  Similarity=0.224  Sum_probs=40.2

Q ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC---CcHHHHHHHHhcccC
Q 033417           68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKL----CP---TNVKVVILCSGSHPN  117 (119)
Q Consensus        68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l----~p---~~~~a~~~~a~~~~~  117 (119)
                      |+.+.++.++|.++..+|+|++|+..|++++++    .+   .-..+++++|.++..
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~   58 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR   58 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            667889999999999999999999999999976    22   235677888887643

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.96  E-value=3.1e-05  Score=58.46  Aligned_cols=84  Identities=26%  Similarity=0.252  Sum_probs=76.3

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCC
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---GNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---~~~~~A~~~~~~al~l~p~  103 (119)
                      =|..++.++..|+..|-.+  .+..|+..|.+++..    -|....+|.+++.++++.   |..-.|+.+|-.+++++|.
T Consensus       370 L~e~ie~~~~egnd~ly~~--~~~~~i~~~s~a~q~----~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s  443 (758)
T KOG1310|consen  370 LPENIEKFKTEGNDGLYES--IVSGAISHYSRAIQY----VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS  443 (758)
T ss_pred             chHHHHHHHhhccchhhhH--HHHHHHHHHHHHhhh----ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence            3667889999999999888  799999999999999    999999999999999874   5778899999999999999


Q ss_pred             cHHHHHHHHhccc
Q 033417          104 NVKVVILCSGSHP  116 (119)
Q Consensus       104 ~~~a~~~~a~~~~  116 (119)
                      ..++|++++.++.
T Consensus       444 ~~kah~~la~aL~  456 (758)
T KOG1310|consen  444 IQKAHFRLARALN  456 (758)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.96  E-value=6.9e-05  Score=56.71  Aligned_cols=92  Identities=17%  Similarity=0.078  Sum_probs=76.8

Q ss_pred             HHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           24 AALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        24 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ....|.........|..++..|  +|+.|+..+.+++++...    ..|.-.......|..|..++++.+|+..|++++.
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g--~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQG--RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3457888889999999999999  899999999999987221    2566667777799999999999999999999998


Q ss_pred             h--------CCCcHHHHHHHHhcccC
Q 033417          100 L--------CPTNVKVVILCSGSHPN  117 (119)
Q Consensus       100 l--------~p~~~~a~~~~a~~~~~  117 (119)
                      +        +|.-.-++.++|.+|..
T Consensus       270 i~e~~~G~~h~~va~~l~nLa~ly~~  295 (508)
T KOG1840|consen  270 IREEVFGEDHPAVAATLNNLAVLYYK  295 (508)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence            7        46667888888888754

>PRK10941 hypothetical protein; Provisional

Probab=97.94  E-value=0.0002  Score=50.22  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=67.8

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .-+.+.=..+.+.+  +++.|+...+..+.+    .|+++.-+..||.+|.++|.+..|+.+++.-++..|+.+.+..-+
T Consensus       182 Rml~nLK~~~~~~~--~~~~AL~~~e~ll~l----~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        182 KLLDTLKAALMEEK--QMELALRASEALLQF----DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            34556667778888  899999999999999    999999999999999999999999999999999999998887665


Q ss_pred             Hh
Q 033417          112 SG  113 (119)
Q Consensus       112 a~  113 (119)
                      .+
T Consensus       256 ~q  257 (269)
T PRK10941        256 AQ  257 (269)
T ss_pred             HH
Confidence            44

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.00015  Score=54.21  Aligned_cols=95  Identities=16%  Similarity=0.114  Sum_probs=67.2

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++.+....+...+.+-.+++++.|..+-..|  +.++|+.+|-+.-.+    --.++..++.++.+|..+.+..+||+.+
T Consensus       508 ka~~~ykeal~ndasc~ealfniglt~e~~~--~ldeald~f~klh~i----l~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  508 KAAEFYKEALNNDASCTEALFNIGLTAEALG--NLDEALDCFLKLHAI----LLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHhcccHHHhc--CHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            4555566666666667777777777777777  777777777665444    4456777777777777777777777777


Q ss_pred             HHHHHhCCCcHHHHHHHHhcc
Q 033417           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      -++..+-|+++..+-.+|..|
T Consensus       582 ~q~~slip~dp~ilskl~dly  602 (840)
T KOG2003|consen  582 MQANSLIPNDPAILSKLADLY  602 (840)
T ss_pred             HHhcccCCCCHHHHHHHHHHh
Confidence            777777777777777777655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.94  E-value=7.3e-05  Score=57.35  Aligned_cols=97  Identities=15%  Similarity=0.184  Sum_probs=83.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++..........++....-|.-.|..+-...  +|++||.+|+.|+.+    .|+|..++..++..+.++++++-...
T Consensus        57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--~Y~eaiKcy~nAl~~----~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--KYDEAIKCYRNALKI----EKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             hHHHHHHHHHHhccCcccchhHHHHHHHHhhhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            445556666666778887778888887776554  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .-.+.++++|.+-..|+..|.++
T Consensus       131 tr~~LLql~~~~ra~w~~~Avs~  153 (700)
T KOG1156|consen  131 TRNQLLQLRPSQRASWIGFAVAQ  153 (700)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999998888887764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=0.00021  Score=49.69  Aligned_cols=80  Identities=15%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+.+++=+|..+|..|  +|+.|...|..++.--|+ .|.-++.++.+|.|+..+|+.++|-..++++++--|+...+-.
T Consensus       177 ~~nA~yWLGe~~y~qg--~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         177 TPNAYYWLGESLYAQG--DYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             cchhHHHHHHHHHhcc--cchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            5666777999999999  999999999999987565 7788899999999999999999999999999999999887766


Q ss_pred             HHH
Q 033417          110 LCS  112 (119)
Q Consensus       110 ~~a  112 (119)
                      ...
T Consensus       254 Ak~  256 (262)
T COG1729         254 AKV  256 (262)
T ss_pred             HHH
Confidence            543

>smart00028 TPR Tetratricopeptide repeats

Probab=97.91  E-value=3.1e-05  Score=35.16  Aligned_cols=33  Identities=39%  Similarity=0.466  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .++.++|.++..+|++++|+..++++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            467788899999999999999999998888753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.91  E-value=2.2e-06  Score=61.23  Aligned_cols=83  Identities=23%  Similarity=0.210  Sum_probs=77.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+++.+..+..++|..+..+..++.++.+.+  .+..|++.|..++++    +|+...-|-.++.+...+|+|++|..
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~--kp~~airD~d~A~ei----n~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK--KPNAAIRDCDFAIEI----NPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeecc--CCchhhhhhhhhhcc----CcccccccchhhHHHHHhhchHHHHH
Confidence            556777788888899999999999999999998  699999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 033417           93 DTEEALKLC  101 (119)
Q Consensus        93 ~~~~al~l~  101 (119)
                      ++..+++++
T Consensus       204 dl~~a~kld  212 (377)
T KOG1308|consen  204 DLALACKLD  212 (377)
T ss_pred             HHHHHHhcc
Confidence            999999885

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.90  E-value=5.1e-05  Score=60.71  Aligned_cols=93  Identities=14%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ++..+......+|++...|...|..|...|  .|..|+..|+++..+    +|.+.-..+..|....-+|+|.+|+..+.
T Consensus       581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sG--ry~~AlKvF~kAs~L----rP~s~y~~fk~A~~ecd~GkYkeald~l~  654 (1238)
T KOG1127|consen  581 AVCEFQSALRTDPKDYNLWLGLGEAYPESG--RYSHALKVFTKASLL----RPLSKYGRFKEAVMECDNGKYKEALDALG  654 (1238)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHhcC--ceehHHHhhhhhHhc----CcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344455555555555555555555555555  555555555555555    55555555555555555555665555555


Q ss_pred             HHHHhCCCcHHHHHHHHhc
Q 033417           96 EALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~  114 (119)
                      +.+........+...+|.+
T Consensus       655 ~ii~~~s~e~~~q~gLaE~  673 (1238)
T KOG1127|consen  655 LIIYAFSLERTGQNGLAES  673 (1238)
T ss_pred             HHHHHHHHHHHhhhhHHHH
Confidence            5555444444444444433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.85  E-value=5.3e-05  Score=35.56  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           73 LYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +++++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56778888888888888888888888887764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.85  E-value=0.00078  Score=42.52  Aligned_cols=68  Identities=21%  Similarity=0.198  Sum_probs=57.8

Q ss_pred             hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ........+...+..+...|  ++++|+..+.+++..    +|.+..+|..+-.++...|++.+|+..|++..+
T Consensus        57 l~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   57 LRELYLDALERLAEALLEAG--DYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34456677888888889988  999999999999999    999999999999999999999999999998743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.00016  Score=51.79  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=64.0

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      .+..|.+++-+.+-.|  +|..|+...++++.+    +|....++++-|.|++.+.++.+|+..|+..++++.+...+
T Consensus       118 navLY~NRAAa~~~l~--NyRs~l~Dcs~al~~----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLG--NYRSALNDCSAALKL----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             HHHHHhhHHHHHHHHH--HHHHHHHHHHHHHhc----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            4556778888888888  999999999999999    99999999999999999999999999999999887655443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.0003  Score=50.39  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .++++..+.++...+|+.+.+-..+|.+....|  +|.+|++.++.+++.    +|+.. .+.-.+..||..+|+.++.+
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g--~y~~AV~~~e~v~eQ----n~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELAKG--DYQKAVEALERVLEQ----NPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHhcc--chHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            456788899999999999999999999999999  999999999999999    88664 56777889999999999999


Q ss_pred             HHHHHHHHhCCC
Q 033417           92 TDTEEALKLCPT  103 (119)
Q Consensus        92 ~~~~~al~l~p~  103 (119)
                      ....++.+..+.
T Consensus       270 ~fL~~~~~~~~g  281 (389)
T COG2956         270 NFLRRAMETNTG  281 (389)
T ss_pred             HHHHHHHHccCC
Confidence            999999987664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.77  E-value=2.7e-05  Score=37.86  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           74 YANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        74 ~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +.++|.++..+|+|++|+..|+++|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566677777777777777777775543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.0011  Score=46.25  Aligned_cols=94  Identities=18%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...+.+...++.+....-...+++-+-.|++.+.+|.-.|+.--+.    .|..+.+....+.|++.+|+|++|....+
T Consensus       156 A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~  231 (299)
T KOG3081|consen  156 AEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLE  231 (299)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence            44455555556665444434444444545545678888888887665    56777888888889999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHh
Q 033417           96 EALKLCPTNVKVVILCSG  113 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~  113 (119)
                      .+|.-++.+++++-++-.
T Consensus       232 eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  232 EALDKDAKDPETLANLIV  249 (299)
T ss_pred             HHHhccCCCHHHHHHHHH
Confidence            999888888888776543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.71  E-value=0.00035  Score=52.60  Aligned_cols=94  Identities=19%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+.+.++......|+.+.-+...|..+...|  +.++|++.|++++.....-.+-...+++.+|.|++.+.+|++|..
T Consensus       249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g--~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKG--NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc--CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            456778899999999999999999999999999  999999999998864111133446788999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHH
Q 033417           93 DTEEALKLCPTNVKVVI  109 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~  109 (119)
                      ++.+.++.+.. .++.|
T Consensus       327 ~f~~L~~~s~W-Ska~Y  342 (468)
T PF10300_consen  327 YFLRLLKESKW-SKAFY  342 (468)
T ss_pred             HHHHHHhcccc-HHHHH
Confidence            99999997654 44443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.68  E-value=0.00061  Score=54.75  Aligned_cols=78  Identities=14%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ..+.+-......+.+-.+++.+|.+|-+.|  ++++|...|+++|++    +|.++.+.++.|..+... +.++|+..+.
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g--~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~  173 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLN--ENKKLKGVWERLVKA----DRDNPEIVKKLATSYEEE-DKEKAITYLK  173 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence            344455555556777789999999999999  899999999999999    999999999999999999 9999999999


Q ss_pred             HHHHh
Q 033417           96 EALKL  100 (119)
Q Consensus        96 ~al~l  100 (119)
                      +|+..
T Consensus       174 KAV~~  178 (906)
T PRK14720        174 KAIYR  178 (906)
T ss_pred             HHHHH
Confidence            99875

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.66  E-value=0.00043  Score=53.69  Aligned_cols=60  Identities=15%  Similarity=0.201  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +.++|+++++++|+.    -|+...+|..+|+++..+++.+.|...|...++..|..+..|..+
T Consensus       666 ~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL  725 (913)
T KOG0495|consen  666 NVEEALRLLEEALKS----FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL  725 (913)
T ss_pred             hHHHHHHHHHHHHHh----CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence            344444444444444    444444444444444444444444444444444444444444333

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.60  E-value=0.00048  Score=49.31  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=68.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..-...+....+.|  .-++|...|..|+.+    .|+++.++...|......++.-+|-.+|-++|.+.|.|.+++-+
T Consensus       116 A~~Al~~A~~~~~~G--k~ekA~~lfeHAlal----aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  116 AILALKAAGRSRKDG--KLEKAMTLFEHALAL----APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             HHHHHHHHHHHHhcc--chHHHHHHHHHHHhc----CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            444455566667778  689999999999999    99999999999999988899999999999999999999999988


Q ss_pred             HHhc
Q 033417          111 CSGS  114 (119)
Q Consensus       111 ~a~~  114 (119)
                      ++..
T Consensus       190 R~RT  193 (472)
T KOG3824|consen  190 RART  193 (472)
T ss_pred             hhcc
Confidence            7653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.56  E-value=0.00092  Score=48.78  Aligned_cols=80  Identities=20%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ..-++.+++-.+.+|+++..+..+|..+++++  .|.+|-..++.+++.    .|+ ..-+..+|.++.++|+..+|-+.
T Consensus       311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~--~w~kA~~~leaAl~~----~~s-~~~~~~la~~~~~~g~~~~A~~~  383 (400)
T COG3071         311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK--LWGKASEALEAALKL----RPS-ASDYAELADALDQLGEPEEAEQV  383 (400)
T ss_pred             hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh--HHHHHHHHHHHHHhc----CCC-hhhHHHHHHHHHHcCChHHHHHH
Confidence            34567788888889999999999999999998  999999999999999    654 44578899999999999999999


Q ss_pred             HHHHHHh
Q 033417           94 TEEALKL  100 (119)
Q Consensus        94 ~~~al~l  100 (119)
                      .++++.+
T Consensus       384 r~e~L~~  390 (400)
T COG3071         384 RREALLL  390 (400)
T ss_pred             HHHHHHH
Confidence            9998853

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.47  E-value=0.00054  Score=48.17  Aligned_cols=84  Identities=24%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHh------cHHHHHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccC-CC-cccHHHHHHHHHHHHHhc
Q 033417           15 SEKADLDAIAAL------KESAAIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVL-SD-SENSVLYANRAHVNLLLG   85 (119)
Q Consensus        15 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~-~~-~~~~~~~~~~a~~~~~l~   85 (119)
                      +++..+.++..+      ...-+..+...|..+... |  ++++|+..|.+|+++-.. .. .....++.+.|.++.++|
T Consensus        92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~  169 (282)
T PF14938_consen   92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG  169 (282)
T ss_dssp             HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence            445555555543      133466788888888887 7  899999999999987221 11 233567888999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 033417           86 NYRRALTDTEEALKL  100 (119)
Q Consensus        86 ~~~~A~~~~~~al~l  100 (119)
                      +|++|+..|+++...
T Consensus       170 ~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  170 RYEEAIEIYEEVAKK  184 (282)
T ss_dssp             -HHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998875

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.46  E-value=0.00031  Score=33.19  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=27.5

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|.++...|  ++++|+..|++++++
T Consensus         1 a~~~~~lg~~y~~~~--~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLG--DYEEALEYFEKALEL   30 (34)
T ss_dssp             -HHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh
Confidence            357889999999999  999999999999999

...

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.45  E-value=0.002  Score=50.22  Aligned_cols=93  Identities=14%  Similarity=-0.015  Sum_probs=83.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++...+..|+....|..+|.++-+.+  +.+.|-..|.+++..    +|....+|..++..-.+.|....|..
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~--~ie~aR~aY~~G~k~----cP~~ipLWllLakleEk~~~~~rAR~  740 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQME--NIEMAREAYLQGTKK----CPNSIPLWLLLAKLEEKDGQLVRARS  740 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH--HHHHHHHHHHhcccc----CCCCchHHHHHHHHHHHhcchhhHHH
Confidence            457788889999999999999999999999988  899999999999999    88888899999998888899999999


Q ss_pred             HHHHHHHhCCCcHHHHHHH
Q 033417           93 DTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~  111 (119)
                      .++++.--+|.+...|+..
T Consensus       741 ildrarlkNPk~~~lwle~  759 (913)
T KOG0495|consen  741 ILDRARLKNPKNALLWLES  759 (913)
T ss_pred             HHHHHHhcCCCcchhHHHH
Confidence            9999988899888877654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.44  E-value=0.0016  Score=51.75  Aligned_cols=95  Identities=14%  Similarity=0.046  Sum_probs=80.0

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .++....+++.+.+|+..-+..-.|..+++.|  .+++|..+++..-..    .+++...+-.+-.||..+|++++|...
T Consensus        26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~g--k~~ea~~~Le~~~~~----~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLG--KGDEALKLLEALYGL----KGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhc--CchhHHHHHhhhccC----CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            45667888888999999999999999999999  799999777665555    566777778889999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |+++++.+|. .+..+.+-.+|
T Consensus       100 Ye~~~~~~P~-eell~~lFmay  120 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAY  120 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHH
Confidence            9999999998 76666665554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.44  E-value=0.00014  Score=34.92  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.3

Q ss_pred             HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHH
Q 033417           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAI   53 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~   53 (119)
                      +.++..++|+++.++.++|..+...|  ++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g--~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQG--DYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCc--CHHhhc
Confidence            46788899999999999999999999  899886

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.43  E-value=0.00032  Score=48.14  Aligned_cols=58  Identities=21%  Similarity=0.264  Sum_probs=53.6

Q ss_pred             HHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           41 YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+.+  |.+.|.+.|.+++.+    .|+....|+..|....+.|+++.|...|+++++++|.+
T Consensus         5 ~~~~~--D~~aaaely~qal~l----ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESG--DAEAAAELYNQALEL----APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccC--ChHHHHHHHHHHhhc----CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            44566  899999999999999    99999999999999999999999999999999999965

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.39  E-value=0.00045  Score=33.42  Aligned_cols=28  Identities=32%  Similarity=0.599  Sum_probs=24.3

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      ++.++|..+.+.|  +|++|+..|++++.+
T Consensus         1 al~~Lg~~~~~~g--~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQG--DYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence            4778999999999  999999999997766

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.31  E-value=0.0022  Score=37.82  Aligned_cols=59  Identities=27%  Similarity=0.416  Sum_probs=46.8

Q ss_pred             HHHhchHhHHHHHHHHHHHHhcccCCCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417           41 YVKKGKKHYYDAIDCYTRAINQNVLSDS-----ENSVLYANRAHVNLLLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ..+.|  +|..|++.+.+..+.......     ....+..++|.++...|++++|+..+++++++-
T Consensus         8 ~~~~~--dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSG--DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcC--CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            34566  899999999988877433222     235677889999999999999999999999874

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.00071  Score=47.49  Aligned_cols=68  Identities=22%  Similarity=0.307  Sum_probs=59.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .....+.+..+....  +|..|.+.|++.+..    +|.++.+-++.|.|++-+|+..+|+.....+++..|..
T Consensus       252 ~~V~~n~a~i~lg~n--n~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQN--NFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHhhhhhheeccc--chHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            344556666666665  899999999999999    99999999999999999999999999999999999964

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.28  E-value=0.00017  Score=53.36  Aligned_cols=84  Identities=15%  Similarity=0.189  Sum_probs=60.8

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCC
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL----CPT  103 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l----~p~  103 (119)
                      ...++-++|+.|+..|  +|++||..-+.-+.+...  +....-.++.|+|+|+.-+|+++.|+++|+..+.+    .-.
T Consensus       194 qGRa~GnLGNTyYlLG--df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r  271 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLG--DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR  271 (639)
T ss_pred             hcchhcccCceeeeec--cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence            3455678899999999  999999988877776111  01123458899999999999999999999986544    332


Q ss_pred             --cHHHHHHHHhcc
Q 033417          104 --NVKVVILCSGSH  115 (119)
Q Consensus       104 --~~~a~~~~a~~~  115 (119)
                        ..+..|.+|..|
T Consensus       272 ~vEAQscYSLgNty  285 (639)
T KOG1130|consen  272 TVEAQSCYSLGNTY  285 (639)
T ss_pred             hHHHHHHHHhhhHH
Confidence              244556777665

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.27  E-value=0.011  Score=37.46  Aligned_cols=78  Identities=13%  Similarity=0.089  Sum_probs=59.1

Q ss_pred             HHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           30 AAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      .....++.+.++.+.. +.+..+-+..++..++..   .| ..-.+.+.++..++++|+|+.++.+++..++.+|+|.++
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~---~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA---HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc---CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            4566677788877553 124567788888888621   33 334667778999999999999999999999999999988


Q ss_pred             HHH
Q 033417          108 VIL  110 (119)
Q Consensus       108 ~~~  110 (119)
                      .--
T Consensus       108 ~~L  110 (149)
T KOG3364|consen  108 LEL  110 (149)
T ss_pred             HHH
Confidence            644

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.26  E-value=0.0021  Score=49.49  Aligned_cols=91  Identities=21%  Similarity=0.150  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHHhcHHHH-HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           15 SEKADLDAIAALKESAA-IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .++..+..+....|... ..+.++++.+.+.|  ....|-..+.+++.+    ....+..++..|..++.+.+...|++.
T Consensus       625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~--~~~da~~~l~q~l~~----~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  625 FAIACLQRALNLAPLQQDVPLVNLANLLIHYG--LHLDATKLLLQALAI----NSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             HHHHHHHHHhccChhhhcccHHHHHHHHHHhh--hhccHHHHHHHHHhh----cccCchHHHhcchhHHHHhhhHHHHHH
Confidence            34555666555566543 34789999999999  899999999999999    888899999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHH
Q 033417           94 TEEALKLCPTNVKVVILC  111 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~  111 (119)
                      ++.|++++|+++.....+
T Consensus       699 ~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSL  716 (886)
T ss_pred             HHHHHhcCCCChhhHHHH
Confidence            999999999998766544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.00034  Score=52.64  Aligned_cols=85  Identities=13%  Similarity=0.069  Sum_probs=70.8

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh-cc--------cCC-----CcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN-QN--------VLS-----DSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~-~~--------~~~-----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ....|.++|.++|+.|  -|..++-+|.+|+. .+        |+.     ....-.+.+|.|..|+..|++-.|.+++.
T Consensus       282 ~cif~NNlGcIh~~~~--~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~  359 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLG--CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ  359 (696)
T ss_pred             hheeecCcceEeeehh--hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence            3556789999999999  79999999999995 21        111     22445788999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhccc
Q 033417           96 EALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++...--.+|..|+++|.|.+
T Consensus       360 ~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  360 KAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHHHHhcCcHHHHHHHHHHH
Confidence            999998899999999998764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.25  E-value=0.009  Score=40.12  Aligned_cols=94  Identities=13%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ......+...+.|. ..--+.+|+.+...|  ++.+|...|.+++.=.   -..++.....++.+.+.++++..|..-.+
T Consensus        75 ~~Rea~~~~~~ApT-vqnr~rLa~al~elG--r~~EA~~hy~qalsG~---fA~d~a~lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          75 HLREATEELAIAPT-VQNRYRLANALAELG--RYHEAVPHYQQALSGI---FAHDAAMLLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             HHHHHHHHHhhchh-HHHHHHHHHHHHHhh--hhhhhHHHHHHHhccc---cCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            33444444455564 455668899999999  8999999999998641   34667778888888888888888888888


Q ss_pred             HHHHhCCC--cHHHHHHHHhcc
Q 033417           96 EALKLCPT--NVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~--~~~a~~~~a~~~  115 (119)
                      .+.+.+|.  .+..++..|.++
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHH
Confidence            88888774  355555555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.19  E-value=0.016  Score=36.82  Aligned_cols=77  Identities=26%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE-NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ....+...+..+...+  ++..++..+.+++..    .+. ....+..++.++...+.+.+|+..+..++...|.....+
T Consensus       166 ~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  239 (291)
T COG0457         166 LAEALLALGALLEALG--RYEEALELLEKALKL----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL  239 (291)
T ss_pred             hHHHHHHhhhHHHHhc--CHHHHHHHHHHHHhh----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence            4444445555555555  566666666666666    555 456666666666666666666666666666666544444


Q ss_pred             HHHH
Q 033417          109 ILCS  112 (119)
Q Consensus       109 ~~~a  112 (119)
                      ...+
T Consensus       240 ~~~~  243 (291)
T COG0457         240 YNLA  243 (291)
T ss_pred             hhHH
Confidence            4433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.18  E-value=0.011  Score=37.16  Aligned_cols=81  Identities=21%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             HHHHhHHHHHhchHhHHHHHHHHHHHHhccc-----CCC-------------cccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQNV-----LSD-------------SENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-----~~~-------------~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...|......+  +...++..+.+++.+-.     ...             .....+...++..+...|++++|+..++
T Consensus         9 ~~~~a~~~~~~~--~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    9 LVREARAAARAG--DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHTT---HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344556666666  78888888999887721     101             1123355566777888999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhccc
Q 033417           96 EALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++.++|.+..+|..+-.+|.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~  107 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALA  107 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHH
Confidence            999999999999988877664

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.18  E-value=0.00057  Score=50.65  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=63.3

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc--CCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C-
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV--LSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC----P-  102 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~----p-  102 (119)
                      .+..|.++|+.||-.+  +|++|+.+-+.-|-+..  -+.-..+..--|+|+.+-.+|.|++|+.+|.+-|.+.    . 
T Consensus        54 LSAIYsQLGNAyfyL~--DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr  131 (639)
T KOG1130|consen   54 LSAIYSQLGNAYFYLK--DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR  131 (639)
T ss_pred             HHHHHHHhcchhhhHh--hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH
Confidence            4667889999999998  99999987443332211  1123345556788999999999999999999876652    2 


Q ss_pred             -CcHHHHHHHHhcccC
Q 033417          103 -TNVKVVILCSGSHPN  117 (119)
Q Consensus       103 -~~~~a~~~~a~~~~~  117 (119)
                       ....++|++|.+|-.
T Consensus       132 v~e~RAlYNlgnvYha  147 (639)
T KOG1130|consen  132 VLESRALYNLGNVYHA  147 (639)
T ss_pred             HhhhHHHhhhhhhhhh
Confidence             346899999998853

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.16  E-value=0.0018  Score=30.07  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=28.7

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE   69 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~   69 (119)
                      ++++..|.++.+.|  ++++|+..|++.+..    .|+
T Consensus         1 ~a~~~~a~~~~~~g--~~~~A~~~~~~~~~~----~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLG--DYDEAIEYFQRLIKR----YPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHC--HHHHHHHHHHHHHHH----STT
T ss_pred             CHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CcC
Confidence            46789999999999  999999999999998    665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.13  E-value=0.005  Score=46.48  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----------C---------Ccc--cHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----------S---------DSE--NSV   72 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------~---------~~~--~~~   72 (119)
                      .+-++...++..++|+.+.+|.-++.....    ...+|...|+++++....          .         .+.  ..-
T Consensus       185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y  260 (539)
T PF04184_consen  185 QARIKAAKEALEINPDCADAYILLAEEEAS----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY  260 (539)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHhhccccccc----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence            345567788888999999998877665443    246677777776654110          0         011  234


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHhcccC
Q 033417           73 LYANRAHVNLLLGNYRRALTDTEEALKLCPT--NVKVVILCSGSHPN  117 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~a~~~~~  117 (119)
                      +...+|+|.-++|+.+||+..++..++..|.  +...++++..+++.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe  307 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE  307 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence            5567889999999999999999999998874  56677887776643

The molecular function of this protein is uncertain.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.015  Score=42.68  Aligned_cols=75  Identities=21%  Similarity=0.230  Sum_probs=62.5

Q ss_pred             HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      -.+..|++.   .|++||+.|.+.+..    +|+...+-.++|.||+++.-|+-+.+..+--++-.|+++-+...++-.+
T Consensus       157 LAsvhYmR~---HYQeAIdvYkrvL~d----n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~  229 (557)
T KOG3785|consen  157 LASVHYMRM---HYQEAIDVYKRVLQD----NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNL  229 (557)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHhc----ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            344445554   599999999999999    9999999999999999999999998888888888999998887776555


Q ss_pred             cC
Q 033417          116 PN  117 (119)
Q Consensus       116 ~~  117 (119)
                      +.
T Consensus       230 fR  231 (557)
T KOG3785|consen  230 FR  231 (557)
T ss_pred             hh
Confidence            43

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.00084  Score=47.96  Aligned_cols=65  Identities=22%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ..+....+.|...|+.|  +|++|+..|+.+++.    ..-++.+-++++.|+++.|++..|+....+.++
T Consensus       142 n~Ad~~in~gCllykeg--qyEaAvqkFqaAlqv----sGyqpllAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEG--QYEAAVQKFQAALQV----SGYQPLLAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             Cccchhccchheeeccc--cHHHHHHHHHHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            46788899999999999  899999999999999    888888899999999999999999998888765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.003  Score=48.44  Aligned_cols=90  Identities=17%  Similarity=0.088  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc--------------------------ccCCCc
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ--------------------------NVLSDS   68 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~--------------------------~~~~~~   68 (119)
                      ++.....++..+.|++..+++....++.+.+  .|++|+.....-...                          ....++
T Consensus        30 ~a~k~~~Kil~~~pdd~~a~~cKvValIq~~--ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~  107 (652)
T KOG2376|consen   30 EAVKTANKILSIVPDDEDAIRCKVVALIQLD--KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR  107 (652)
T ss_pred             HHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh--HHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc
Confidence            4445556666666666666666666666655  466665332221110                          000033


Q ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           69 ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+..+.--+|.+.+++|+|++|+..|+..++-+.+..+
T Consensus       108 ~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen  108 LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            33444455566666666666666666666554444333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.003  Score=45.23  Aligned_cols=55  Identities=16%  Similarity=0.118  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +|..||+++.--.+.    .|.+-..+..+|.||+...+|.+|..+|.+...+.|...+
T Consensus        25 ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q   79 (459)
T KOG4340|consen   25 RYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ   79 (459)
T ss_pred             hHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence            345555554444444    4444444445555555555555555555555555554433

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.0013  Score=51.66  Aligned_cols=85  Identities=29%  Similarity=0.351  Sum_probs=76.1

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL--LGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~--l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      .+..+...|+..|..+  ++..|.-.|..++.+.|+.++..+..+.+++.|++.  +|+|..++..|..++...|...++
T Consensus        52 ra~~~~~E~n~~~~K~--d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~  129 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKR--DYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA  129 (748)
T ss_pred             HHHHHHhhhhHHhhhh--hhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence            3667788999999988  999999999999999888888899999999999886  578999999999999999999999


Q ss_pred             HHHHHhccc
Q 033417          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      ++.++.+|.
T Consensus       130 Ll~r~~~y~  138 (748)
T KOG4151|consen  130 LLKRARKYE  138 (748)
T ss_pred             HhhhhhHHH
Confidence            999887763

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.0071  Score=47.07  Aligned_cols=79  Identities=14%  Similarity=0.094  Sum_probs=66.2

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      -..+++.+...|+..  +|..+++.|...+...|.+  +...+.+..+++.||+.+.+.+.|.+++.+|=+.+|.++-..
T Consensus       354 H~iLWn~A~~~F~~~--~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKME--KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHHHHhhHHHHHHH--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            345778889999988  8999999999999886554  334467889999999999999999999999999999887655


Q ss_pred             HHH
Q 033417          109 ILC  111 (119)
Q Consensus       109 ~~~  111 (119)
                      +..
T Consensus       432 ~~~  434 (872)
T KOG4814|consen  432 LLM  434 (872)
T ss_pred             HHH
Confidence            443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.0085  Score=43.57  Aligned_cols=99  Identities=11%  Similarity=-0.018  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++-...+++..-.|++..++...-..+|..|  +...-...+++.+..=..+.|-..-++-..+.++...|.|++|....
T Consensus       121 ~a~~~wdklL~d~PtDlla~kfsh~a~fy~G--~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A  198 (491)
T KOG2610|consen  121 EAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG--NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA  198 (491)
T ss_pred             HHHHHHHHHHHhCchhhhhhhhhhhHHHhcc--chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence            3445678888889999999999889999988  77777777777765411113333444455677888999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHhcc
Q 033417           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++|.+..+...++.++
T Consensus       199 ~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  199 DRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             HhhccCCCcchHHHHHHHHHH
Confidence            999999999988887777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.97  E-value=0.003  Score=30.87  Aligned_cols=30  Identities=33%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           71 SVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ..++.++|.++..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356788999999999999999999998876

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.97  E-value=0.016  Score=36.86  Aligned_cols=71  Identities=30%  Similarity=0.307  Sum_probs=40.1

Q ss_pred             hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHhCC
Q 033417           26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH-VNLLLGNYRRALTDTEEALKLCP  102 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~-~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      ..+.....+...|......+  ++..++..+..++..    .+.........+. ++...|++.+|+..+.+++...|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457          90 LLPNLAEALLNLGLLLEALG--KYEEALELLEKALAL----DPDPDLAEALLALGALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             hccchHHHHHHHHHHHHHHh--hHHHHHHHHHHHHcC----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            44555556666666666655  566666666666665    4443333333344 56666666666666666655554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.96  E-value=0.021  Score=33.51  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc--HHHHHHHHHHHHHhcCHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN--SVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ....+.+....+|++..+.+..+..++..|  ++++|++.+-..+..    ++..  ..+.-.+-.++-.+|.-+.....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g--~~e~Al~~Ll~~v~~----dr~~~~~~ar~~ll~~f~~lg~~~plv~~   80 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAG--DYEEALDQLLELVRR----DRDYEDDAARKRLLDIFELLGPGDPLVSE   80 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---HHHHHHHHHHHHCC-----TTCCCCHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CccccccHHHHHHHHHHHHcCCCChHHHH
Confidence            446677777889999999999999999988  899999999888887    4433  33444444455556665444444


Q ss_pred             HHH
Q 033417           94 TEE   96 (119)
Q Consensus        94 ~~~   96 (119)
                      |++
T Consensus        81 ~RR   83 (90)
T PF14561_consen   81 YRR   83 (90)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.95  E-value=0.012  Score=41.45  Aligned_cols=70  Identities=24%  Similarity=0.302  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-CCc-ccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SDS-ENSVLYANRAHVNLLL-GNYRRALTDTEEALKL  100 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~-~~~~~~~~~a~~~~~l-~~~~~A~~~~~~al~l  100 (119)
                      ..+...+..+...++.+  ++++|+..|++++.+-.. +.+ .-+.++.++|.++... |++++|+..|++|+++
T Consensus        72 ~~Aa~~~~~Aa~~~k~~--~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   72 FEAAKAYEEAANCYKKG--DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33333334444445555  799999999999877222 122 3357888899999888 9999999999999986

>smart00028 TPR Tetratricopeptide repeats

Probab=96.89  E-value=0.0027  Score=28.21  Aligned_cols=29  Identities=34%  Similarity=0.645  Sum_probs=26.4

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      ..+...|..++..+  +++.|+..+++++++
T Consensus         2 ~~~~~~a~~~~~~~--~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLG--DYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHh--hHHHHHHHHHHHHcc
Confidence            45778999999998  899999999999998

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.88  E-value=0.0096  Score=38.66  Aligned_cols=83  Identities=18%  Similarity=0.081  Sum_probs=66.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++.....++.++-+.|..+..-.-.|..+...|  +|.+|++.++....-    .|..+.+-..++.|+..+|+..= ..
T Consensus        26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~--~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~~D~~W-r~   98 (160)
T PF09613_consen   26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRG--DWDDALRLLRELEER----APGFPYAKALLALCLYALGDPSW-RR   98 (160)
T ss_pred             hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC--CHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHcCChHH-HH
Confidence            455667888999999999999999999999999  999999999998887    78888888888899888887432 22


Q ss_pred             HHHHHHHhCC
Q 033417           93 DTEEALKLCP  102 (119)
Q Consensus        93 ~~~~al~l~p  102 (119)
                      +..++++-.|
T Consensus        99 ~A~evle~~~  108 (160)
T PF09613_consen   99 YADEVLESGA  108 (160)
T ss_pred             HHHHHHhcCC
Confidence            2455565544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.88  E-value=0.024  Score=32.48  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+....+.|..++...  +.++|+...+++++..++ .++...++-.+..++...|+|.+++...-+=+++
T Consensus         5 ~ak~~ie~GlkLY~~~--~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQN--ETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556678899999887  899999999999998333 2333344444556788899999999987665543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.86  E-value=0.0072  Score=45.00  Aligned_cols=80  Identities=13%  Similarity=0.152  Sum_probs=61.0

Q ss_pred             HHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC----Cc-----cc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS----DS-----EN-----SVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~-----~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      -...|..+++.+  .|..|+..|..+|+++.++    +|     ++     .-+--.+..||+++++.+-|+...-++|-
T Consensus       179 AL~das~~yrqk--~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  179 ALKDASSCYRQK--KYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHhhH--HHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            344556667766  7888888888888886542    11     11     12334567899999999999999999999


Q ss_pred             hCCCcHHHHHHHHhcc
Q 033417          100 LCPTNVKVVILCSGSH  115 (119)
Q Consensus       100 l~p~~~~a~~~~a~~~  115 (119)
                      ++|.+...|++.|.|+
T Consensus       257 lnP~~frnHLrqAavf  272 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVF  272 (569)
T ss_pred             cCcchhhHHHHHHHHH
Confidence            9999999999988765

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.85  E-value=0.007  Score=35.55  Aligned_cols=49  Identities=18%  Similarity=0.165  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           52 AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        52 A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+..+++.+..    +|++..+.+.+|..++..|++++|+..+-.+++.+|++
T Consensus         7 ~~~al~~~~a~----~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAA----NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            45668888898    99999999999999999999999999999999998866

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.012  Score=41.27  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=66.9

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH-HH
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE-EA   97 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~-~a   97 (119)
                      .++.....-|..+..+..++.+++..|  +|++|...+..+|..    ++.+++.+.|+-.+-..+|...++.+.+- +.
T Consensus       195 ifeE~s~k~~~T~~llnG~Av~~l~~~--~~eeAe~lL~eaL~k----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  195 IFEELSEKTPPTPLLLNGQAVCHLQLG--RYEEAESLLEEALDK----DAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHhcccCCChHHHccHHHHHHHhc--CHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            444444434446778889999999999  999999999999999    99999999999999999999988887554 55


Q ss_pred             HHhCCCcHH
Q 033417           98 LKLCPTNVK  106 (119)
Q Consensus        98 l~l~p~~~~  106 (119)
                      ...+|.++.
T Consensus       269 k~~~p~h~~  277 (299)
T KOG3081|consen  269 KLSHPEHPF  277 (299)
T ss_pred             HhcCCcchH
Confidence            567887754

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.021  Score=40.03  Aligned_cols=73  Identities=16%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417           35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      .+.=..+.+.+  .++.|...-.+.+.+    +|+++.-..-+|.+|.++|.+.-|++++..-++..|+.+.+-..+++
T Consensus       185 ~~lk~~~~~e~--~~~~al~~~~r~l~l----~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         185 RNLKAALLREL--QWELALRVAERLLDL----NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHhh--chHHHHHHHHHHHhh----CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            34444555665  799999999999999    99999889999999999999999999999999999998877665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.0043  Score=45.38  Aligned_cols=55  Identities=31%  Similarity=0.431  Sum_probs=46.2

Q ss_pred             HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .|-++|+.|  +|++|+..|+.+...    +.-+..++.++|.|++-+|.|.+|-+...++
T Consensus        63 ia~C~fhLg--dY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   63 IAHCYFHLG--DYEEALNVYTFLMNK----DDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHhhc--cHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            678889998  899999999988876    6667788889999999999999988766654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.65  E-value=0.056  Score=35.12  Aligned_cols=83  Identities=16%  Similarity=-0.000  Sum_probs=69.7

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .......+.+........+  +.+++...+...-.+    .|..+.+-..-|..++..|+|.+|+..++.+..-.|..+-
T Consensus         6 ~~~iv~gLie~~~~al~~~--~~~D~e~lL~ALrvL----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~   79 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLG--DPDDAEALLDALRVL----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY   79 (160)
T ss_pred             cHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence            4456777888889999988  899999999988888    8999999999999999999999999999998888887775


Q ss_pred             HHHHHHhcc
Q 033417          107 VVILCSGSH  115 (119)
Q Consensus       107 a~~~~a~~~  115 (119)
                      +-=-++.|+
T Consensus        80 ~kALlA~CL   88 (160)
T PF09613_consen   80 AKALLALCL   88 (160)
T ss_pred             HHHHHHHHH
Confidence            444444444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.034  Score=42.91  Aligned_cols=80  Identities=15%  Similarity=0.142  Sum_probs=48.2

Q ss_pred             hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHhCCC-
Q 033417           26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD-TEEALKLCPT-  103 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~-~~~al~l~p~-  103 (119)
                      +++.+...+.-.|..+++.|  +|++|+..|+..++-    +.++...-. ++.+...    ..+... ..+++.+.|+ 
T Consensus       105 ~~~~~~~ll~L~AQvlYrl~--~ydealdiY~~L~kn----~~dd~d~~~-r~nl~a~----~a~l~~~~~q~v~~v~e~  173 (652)
T KOG2376|consen  105 LDRLDDKLLELRAQVLYRLE--RYDEALDIYQHLAKN----NSDDQDEER-RANLLAV----AAALQVQLLQSVPEVPED  173 (652)
T ss_pred             ccccchHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCchHHHHH-HHHHHHH----HHhhhHHHHHhccCCCcc
Confidence            34444556667888889988  899999999988776    555444322 2222211    111111 3444555564 


Q ss_pred             cHHHHHHHHhccc
Q 033417          104 NVKVVILCSGSHP  116 (119)
Q Consensus       104 ~~~a~~~~a~~~~  116 (119)
                      ..+.+|+.|.++.
T Consensus       174 syel~yN~Ac~~i  186 (652)
T KOG2376|consen  174 SYELLYNTACILI  186 (652)
T ss_pred             hHHHHHHHHHHHH
Confidence            5778888877654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.54  E-value=0.0069  Score=29.81  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417           72 VLYANRAHVNLLLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      .+|..+|.+-+..++|.+|+.+|+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.43  E-value=0.053  Score=41.23  Aligned_cols=86  Identities=12%  Similarity=0.002  Sum_probs=67.4

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHHHHHH
Q 033417           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALTDTEE   96 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~   96 (119)
                      ..+..+...-+.+...|.+-..-.-+.+  .+.+--..|.+++..    +|+++++|...|.-.+..+. .+.|...+.+
T Consensus        92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~--~~~~v~ki~~~~l~~----Hp~~~dLWI~aA~wefe~n~ni~saRalflr  165 (568)
T KOG2396|consen   92 FLYRRATNRFNGDVKLWLSYIAFCKKKK--TYGEVKKIFAAMLAK----HPNNPDLWIYAAKWEFEINLNIESARALFLR  165 (568)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence            3444444444556666666655555554  688888999999999    99999999999988887766 9999999999


Q ss_pred             HHHhCCCcHHHHH
Q 033417           97 ALKLCPTNVKVVI  109 (119)
Q Consensus        97 al~l~p~~~~a~~  109 (119)
                      +|+.+|++++.|.
T Consensus       166 gLR~npdsp~Lw~  178 (568)
T KOG2396|consen  166 GLRFNPDSPKLWK  178 (568)
T ss_pred             HhhcCCCChHHHH
Confidence            9999999987764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.28  E-value=0.026  Score=39.78  Aligned_cols=86  Identities=12%  Similarity=0.028  Sum_probs=61.2

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+...+.++....+.....|...|..-+..++ +.+.|...|+.+++.    -|.+..++..-...+..+++.+.+...
T Consensus        18 ~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-d~~~A~~Ife~glk~----f~~~~~~~~~Y~~~l~~~~d~~~aR~l   92 (280)
T PF05843_consen   18 EAARKVFKRARKDKRCTYHVYVAYALMEYYCNK-DPKRARKIFERGLKK----FPSDPDFWLEYLDFLIKLNDINNARAL   92 (280)
T ss_dssp             HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence            345566666665455567778888888777543 777788888888888    788888888777888888888888888


Q ss_pred             HHHHHHhCCCc
Q 033417           94 TEEALKLCPTN  104 (119)
Q Consensus        94 ~~~al~l~p~~  104 (119)
                      |++++..-|..
T Consensus        93 fer~i~~l~~~  103 (280)
T PF05843_consen   93 FERAISSLPKE  103 (280)
T ss_dssp             HHHHCCTSSCH
T ss_pred             HHHHHHhcCch
Confidence            88888765543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.03  Score=39.60  Aligned_cols=96  Identities=15%  Similarity=0.054  Sum_probs=71.9

Q ss_pred             HHHHHHHhc-HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           19 DLDAIAALK-ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        19 ~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      .+.++...+ |..+.....+|...++-|  |-+.|...++..-+-...  .-...-..+.+.+.+++..++|.+|...+.
T Consensus       199 ~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~  276 (366)
T KOG2796|consen  199 AYHSVIKYYPEQEPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT  276 (366)
T ss_pred             HHHHHHHhCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence            344444445 667777888899999999  888888777754322111  023455678888899999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhccc
Q 033417           96 EALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++..||.++.+-.+.|.|++
T Consensus       277 ~i~~~D~~~~~a~NnKALcll  297 (366)
T KOG2796|consen  277 EILRMDPRNAVANNNKALCLL  297 (366)
T ss_pred             hccccCCCchhhhchHHHHHH
Confidence            999999999998888887754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.19  E-value=0.017  Score=28.04  Aligned_cols=30  Identities=27%  Similarity=0.460  Sum_probs=26.7

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+.+.|..+...|  ++++|+..+.+++.+
T Consensus         2 a~~~~~la~~~~~~g--~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQG--RYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh--hcchhhHHHHHHHHH
Confidence            467889999999999  999999999999987

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.19  E-value=0.049  Score=33.25  Aligned_cols=71  Identities=15%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH---HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHhCC
Q 033417           37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLG-----------NYRRALTDTEEALKLCP  102 (119)
Q Consensus        37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~-----------~~~~A~~~~~~al~l~p  102 (119)
                      .+..+|.+|  ++-+|++..+..+..    ++++.   .++..-|.++..+.           ..--+++.+.++..+.|
T Consensus         2 ~A~~~~~rG--nhiKAL~iied~i~~----h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARG--NHIKALEIIEDLISR----HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHHHcc--CHHHHHHHHHHHHHH----ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence            456778888  899999999999887    54444   56666677776543           24568888999999999


Q ss_pred             CcHHHHHHHHh
Q 033417          103 TNVKVVILCSG  113 (119)
Q Consensus       103 ~~~~a~~~~a~  113 (119)
                      .....++.+|.
T Consensus        76 ~~A~~L~~la~   86 (111)
T PF04781_consen   76 DSAHSLFELAS   86 (111)
T ss_pred             hHHHHHHHHHH
Confidence            88888888875

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.16  E-value=0.0094  Score=42.90  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN-RAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +.++..|.+-+.-..+.+  .|.+--..|.+++..    +|.++++|.. .+.-+...++.+.+...+.++|+++|+++.
T Consensus       104 f~D~k~w~~y~~Y~~k~k--~y~~~~nI~~~~l~k----hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~  177 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKK--MYGEMKNIFAECLTK----HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR  177 (435)
T ss_pred             CCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence            456666777776666766  899999999999999    9999999987 445677889999999999999999999988


Q ss_pred             HHHH
Q 033417          107 VVIL  110 (119)
Q Consensus       107 a~~~  110 (119)
                      .|+.
T Consensus       178 iw~e  181 (435)
T COG5191         178 IWIE  181 (435)
T ss_pred             HHHH
Confidence            7753

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.16  E-value=0.094  Score=34.58  Aligned_cols=71  Identities=24%  Similarity=0.360  Sum_probs=56.0

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +.+...++.++|..+.+.|  +++.|+..|.++.+.+.. .......+++.-.+.+..++|..+.....++-.+
T Consensus        32 kesir~~~~~l~~~~~~~G--d~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIG--DLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4667788999999999999  999999999999887322 1223456666777777889999999988887654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.07  E-value=0.11  Score=31.73  Aligned_cols=83  Identities=12%  Similarity=0.252  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHhcHHHH---HHHHHHhHHHHHhch---------HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAA---IELKEKGNEYVKKGK---------KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      ++++.++.....++++.   ......|..+++...         --.-.+++.|.+++.+    .|..+..++.+|.-+-
T Consensus        14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----sp~~A~~L~~la~~l~   89 (111)
T PF04781_consen   14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----SPDSAHSLFELASQLG   89 (111)
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----ChhHHHHHHHHHHHhh
Confidence            46667777766665554   556677777765442         0235678999999999    9999999999888877


Q ss_pred             HhcCHHHHHHHHHHHHHhC
Q 033417           83 LLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l~  101 (119)
                      ....|++++.-++++|.+.
T Consensus        90 s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   90 SVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             hHHHHHHHHHHHHHHhccc
Confidence            7778999999999998853

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.05  E-value=0.085  Score=27.85  Aligned_cols=43  Identities=14%  Similarity=0.028  Sum_probs=33.8

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      +.++..+..+++.|  +|+.|.+..+.+|++    .|++..+..-...+
T Consensus         2 d~lY~lAig~ykl~--~Y~~A~~~~~~lL~~----eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLG--EYEKARRYCDALLEI----EPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT---HHHHHHHHHHHHHH----TTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCcHHHHHHHHHH
Confidence            34677888899999  999999999999999    89888776655444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.90  E-value=0.41  Score=34.48  Aligned_cols=91  Identities=11%  Similarity=-0.040  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhHHHHHhc----------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC
Q 033417           17 KADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      ...+.+....+|.+...|.+....--..-          +.-.+.-+..|++||+.    +|.+..++..+=.+..+...
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~----np~~~~L~l~~l~~~~~~~~   80 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH----NPDSERLLLGYLEEGEKVWD   80 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCC
Confidence            45677778889999999887765433221          00235667889999999    99999888888788888889


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           87 YRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .++...-+++++..+|.+...|...
T Consensus        81 ~~~l~~~we~~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   81 SEKLAKKWEELLFKNPGSPELWREY  105 (321)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHH
Confidence            9999999999999999988777553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.86  E-value=0.044  Score=35.24  Aligned_cols=69  Identities=17%  Similarity=0.073  Sum_probs=55.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY   87 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~   87 (119)
                      .+.....++.+.-+.|+.+..-.-.|..+...|  +|.+|++.++...+-    .+..+..-...+.|+..+|+.
T Consensus        26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg--~w~eA~rvlr~l~~~----~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARG--NYDEAARILRELLSS----AGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHHHHHHHhCCCccccchhHHHHHHHcC--CHHHHHHHHHhhhcc----CCCchHHHHHHHHHHHhcCCh
Confidence            345556788888889999998889999999988  899999999988777    666676667778888888774

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.69  E-value=0.071  Score=25.81  Aligned_cols=32  Identities=19%  Similarity=-0.038  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHH--HHHHHHhCCCc
Q 033417           73 LYANRAHVNLLLGNYRRALTD--TEEALKLCPTN  104 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~--~~~al~l~p~~  104 (119)
                      .++..|..+...|++++|+..  |+-+..++|.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            456667777888888888888  44777777653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.61  E-value=0.31  Score=34.05  Aligned_cols=88  Identities=15%  Similarity=0.150  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHhc---HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-------
Q 033417           15 SEKADLDAIAALK---ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-------   84 (119)
Q Consensus        15 ~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-------   84 (119)
                      ++...++++...+   |-.-.+....+-.+++.+  +|++|+...++-+.+-|. +|+-.-+++-+|.+++..       
T Consensus        52 ~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--~y~~A~~~~drFi~lyP~-~~n~dY~~YlkgLs~~~~i~~~~rD  128 (254)
T COG4105          52 EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--EYDLALAYIDRFIRLYPT-HPNADYAYYLKGLSYFFQIDDVTRD  128 (254)
T ss_pred             HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhccCCccccC
Confidence            4555666666554   345677889999999999  999999999999999666 666677888899997763       


Q ss_pred             -cCHHHHHHHHHHHHHhCCCcH
Q 033417           85 -GNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        85 -~~~~~A~~~~~~al~l~p~~~  105 (119)
                       ..-.+|+..++.+++--|++.
T Consensus       129 q~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         129 QSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCc
Confidence             335788899999999988763

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.42  Score=34.15  Aligned_cols=63  Identities=17%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE   96 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      |...+.-...+......|  ++.+|...+..++..    .|++..+...++.|++..|+.++|...+..
T Consensus       131 ~~~~e~~~~~~~~~~~~e--~~~~a~~~~~~al~~----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         131 PAEEEEALAEAKELIEAE--DFGEAAPLLKQALQA----APENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             ChHHHHHHHHhhhhhhcc--chhhHHHHHHHHHHh----CcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            334556677888888888  899999999999999    899999999999999999999777765544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.59  E-value=0.038  Score=43.52  Aligned_cols=77  Identities=10%  Similarity=0.029  Sum_probs=51.9

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ..+......+.+.|  ++++|.+.+++. ..    .| +...|..+..++...|+++.|...+++.++++|++...|..+
T Consensus       463 ~~y~~li~~l~r~G--~~~eA~~~~~~~-~~----~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L  534 (697)
T PLN03081        463 MHYACMIELLGREG--LLDEAYAMIRRA-PF----KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL  534 (697)
T ss_pred             cchHhHHHHHHhcC--CHHHHHHHHHHC-CC----CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence            44555666666666  677777766542 22    33 344577777777778888888888888888888877777766


Q ss_pred             Hhccc
Q 033417          112 SGSHP  116 (119)
Q Consensus       112 a~~~~  116 (119)
                      +.+|.
T Consensus       535 ~~~y~  539 (697)
T PLN03081        535 LNLYN  539 (697)
T ss_pred             HHHHH
Confidence            66553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.58  E-value=0.27  Score=31.69  Aligned_cols=82  Identities=16%  Similarity=-0.038  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+.....+.+........+  +++++...+...--+    .|..+.+...-|..++..|+|.+|+..++.+.+-.|..+-
T Consensus         6 s~~iv~gLi~~~~~aL~~~--d~~D~e~lLdALrvL----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~   79 (153)
T TIGR02561         6 SNRLLGGLIEVLMYALRSA--DPYDAQAMLDALRVL----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY   79 (153)
T ss_pred             cHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH
Confidence            3445566666777777777  899999988888788    8999999999999999999999999999998887766554


Q ss_pred             HHHHHHhc
Q 033417          107 VVILCSGS  114 (119)
Q Consensus       107 a~~~~a~~  114 (119)
                      +-=-++.|
T Consensus        80 ~kAL~A~C   87 (153)
T TIGR02561        80 GKALLALC   87 (153)
T ss_pred             HHHHHHHH
Confidence            43333443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PLN03077 Protein ECB2; Provisional

Probab=95.51  E-value=0.12  Score=41.77  Aligned_cols=77  Identities=9%  Similarity=0.058  Sum_probs=51.9

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      ...+......+.+.|  ++++|.+.+++. ..    .|+ +..|..+-.++...|+.+.+....+++++++|++...|..
T Consensus       625 ~~~y~~lv~~l~r~G--~~~eA~~~~~~m-~~----~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l  696 (857)
T PLN03077        625 LKHYACVVDLLGRAG--KLTEAYNFINKM-PI----TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL  696 (857)
T ss_pred             hHHHHHHHHHHHhCC--CHHHHHHHHHHC-CC----CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence            456666777777777  677777776653 33    443 3444444445556677777777788888888888888887


Q ss_pred             HHhcc
Q 033417          111 CSGSH  115 (119)
Q Consensus       111 ~a~~~  115 (119)
                      ++.+|
T Consensus       697 l~n~y  701 (857)
T PLN03077        697 LCNLY  701 (857)
T ss_pred             HHHHH
Confidence            77665

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.37  E-value=0.095  Score=37.35  Aligned_cols=85  Identities=15%  Similarity=-0.019  Sum_probs=63.9

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-C-----------------------------CcccHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-S-----------------------------DSENSVLYANRAH   79 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~-----------------------------~~~~~~~~~~~a~   79 (119)
                      .+....+.+..+...|  +..+|+..+...+..... .                             ....+.++..+|.
T Consensus       183 ~~~v~~e~akllw~~g--~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~  260 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQG--EQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAK  260 (352)
T ss_pred             CcchHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHH
Confidence            4677788888999988  789999988888771000 0                             1122445666666


Q ss_pred             HHHHh------cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           80 VNLLL------GNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        80 ~~~~l------~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .....      +..++++..|+++++++|.+.++|+..|..+.
T Consensus       261 w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  261 WLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence            66666      77888999999999999999999999987654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.35  E-value=0.19  Score=33.80  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=28.3

Q ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417           70 NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      .+..--.+|.+++..|+-.+|+..|.++++.+++.+
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            344456688999999999999999999998875543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.27  E-value=0.39  Score=30.00  Aligned_cols=61  Identities=18%  Similarity=0.250  Sum_probs=44.8

Q ss_pred             HhHHHHHhchHhHHHHHHHHHHHHhcccCCC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           37 KGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--------SENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .|...+..|  .|++|...+.++++...+-.        --++-+|..++-++..+|+|++++....++|.
T Consensus        15 ~ae~ql~~g--~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~   83 (144)
T PF12968_consen   15 DAERQLQDG--AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR   83 (144)
T ss_dssp             HHHHHHHHT---HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            344556667  89999999999998743321        23456778888899999999999999988885

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.26  E-value=0.56  Score=31.91  Aligned_cols=82  Identities=16%  Similarity=0.081  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhHHHHHhchHh-------HHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKH-------YYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~-------~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ..+..+...++.+-..|  +       ...|+..|.++++....  ..-+...+.+.+|....++|++++|+..+.+++.
T Consensus       116 ~~A~l~LrlAWlyR~~~--~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLG--DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            34566666777766655  4       35566666666665322  1224467778899999999999999999999998


Q ss_pred             hCCCcH-HHHHHHH
Q 033417          100 LCPTNV-KVVILCS  112 (119)
Q Consensus       100 l~p~~~-~a~~~~a  112 (119)
                      ..-.+. .....+|
T Consensus       194 ~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  194 SKKASKEPKLKDMA  207 (214)
T ss_pred             CCCCCCcHHHHHHH
Confidence            543332 3444444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.23  E-value=0.41  Score=29.94  Aligned_cols=69  Identities=17%  Similarity=0.095  Sum_probs=48.8

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---CCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---SDSEN----SVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---~~~~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ++-.+.-+...+...|  +|++++..-..+|....+   .+.+.    ..+.+++|.++-.+|+.++|+..|+++-+.
T Consensus        54 DA~chA~Ls~A~~~Lg--ry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLG--RYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3444555667778888  899999888888755221   13333    345678999999999999999999998763

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.22  E-value=0.028  Score=40.53  Aligned_cols=62  Identities=24%  Similarity=0.252  Sum_probs=55.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      .++++..++.+.++.|++++.+.+.|...-...  +.-+|-.+|.+|+.+    .|.+..++.||+..
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~--~iv~ADq~Y~~ALti----sP~nseALvnR~RT  193 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHN--EIVEADQCYVKALTI----SPGNSEALVNRART  193 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh--hhHhhhhhhheeeee----CCCchHHHhhhhcc
Confidence            567888999999999999999999999887765  899999999999999    99999999998764

>PRK10941 hypothetical protein; Provisional

Probab=95.20  E-value=0.11  Score=36.59  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=53.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      .+.+....+.+..+.|+++..+.++|..+.+.|  .+..|...++.-|+.    +|+++.+-.-+..+
T Consensus       197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~--c~~~A~~DL~~fl~~----~P~dp~a~~ik~ql  258 (269)
T PRK10941        197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLD--CEHVALSDLSYFVEQ----CPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHh----CCCchhHHHHHHHH
Confidence            456778888999999999999999999999999  899999999999999    78887766554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.18  E-value=0.48  Score=35.06  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ...+.-.+...-+.|  |++.|-.++.++-+.    .+ +.-.....++...+..|++..|.....++++..|.++.+..
T Consensus       118 ~l~~l~aA~AA~qrg--d~~~an~yL~eaae~----~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlr  191 (400)
T COG3071         118 VLAYLLAAEAAQQRG--DEDRANRYLAEAAEL----AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLR  191 (400)
T ss_pred             HHHHHHHHHHHHhcc--cHHHHHHHHHHHhcc----CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHH
Confidence            444445555555555  667776666666655    22 22345566777788888888999888888888998888877


Q ss_pred             HHHhccc
Q 033417          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      -..++|.
T Consensus       192 La~r~y~  198 (400)
T COG3071         192 LALRAYI  198 (400)
T ss_pred             HHHHHHH
Confidence            7666664

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.18  E-value=0.13  Score=34.77  Aligned_cols=59  Identities=22%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .++.....|..|.+.   |.++++..|-+++++.+..+.-++.++..++.++.++|+++.|-
T Consensus       140 t~elq~aLAtyY~kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  140 TAELQYALATYYTKR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            466677777777764   58999999999998866555667888888999999999988774

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.13  E-value=0.19  Score=38.76  Aligned_cols=85  Identities=15%  Similarity=0.064  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++..+.+.....|.....|.+.+.++++++ +++.-.|++....|+++    +|....+++.++.++..++++.+|+++.
T Consensus       393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl----n~s~~kah~~la~aL~el~r~~eal~~~  468 (758)
T KOG1310|consen  393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL----NPSIQKAHFRLARALNELTRYLEALSCH  468 (758)
T ss_pred             HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----ChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence            344555555666777778888888888754 12456788889999999    9999999999999999999999999987


Q ss_pred             HHHHHhCCCc
Q 033417           95 EEALKLCPTN  104 (119)
Q Consensus        95 ~~al~l~p~~  104 (119)
                      ..+....|.+
T Consensus       469 ~alq~~~Ptd  478 (758)
T KOG1310|consen  469 WALQMSFPTD  478 (758)
T ss_pred             HHHhhcCchh
Confidence            7776677733

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.08  E-value=0.27  Score=36.08  Aligned_cols=86  Identities=20%  Similarity=0.088  Sum_probs=65.0

Q ss_pred             HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc--------------cC--------CCcccH---HHH
Q 033417           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN--------------VL--------SDSENS---VLY   74 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--------------~~--------~~~~~~---~~~   74 (119)
                      +-.+...+|=+...+.+.+.++...|  ++..|.+..++||=..              +.        ..++|-   .+.
T Consensus        29 l~~ll~~~PyHidtLlqls~v~~~~g--d~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal  106 (360)
T PF04910_consen   29 LINLLQKNPYHIDTLLQLSEVYRQQG--DHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL  106 (360)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence            34445668889999999999999999  9999999999987220              00        123333   344


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHH
Q 033417           75 ANRAHVNLLLGNYRRALTDTEEALKLCPT-NVKV  107 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a  107 (119)
                      +.......+.|-+..|++.|+-.+.+||. ++-+
T Consensus       107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen  107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence            55566777889999999999999999998 5543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.07  E-value=0.6  Score=33.15  Aligned_cols=67  Identities=18%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ......++..++..+...|  +++.+++.+++.+..    +|-+-.+|..+=..|++.|+...|+..|++.-+
T Consensus       149 ~e~~~~~l~~lae~~~~~~--~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         149 EELFIKALTKLAEALIACG--RADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4556778888999999988  899999999999999    999999999999999999999999999998765

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.05  E-value=0.54  Score=39.27  Aligned_cols=64  Identities=16%  Similarity=0.122  Sum_probs=36.1

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ...+......+.+.|  ++++|...|.+..+..   -+.+...|..+...+.+.|++++|+..+++..+
T Consensus       579 ~vTynaLI~ay~k~G--~ldeA~elf~~M~e~g---i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        579 HITVGALMKACANAG--QVDRAKEVYQMIHEYN---IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            345555555666666  6666666666655541   123445555555566666666666666665544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.97  E-value=0.65  Score=32.91  Aligned_cols=92  Identities=14%  Similarity=0.082  Sum_probs=51.4

Q ss_pred             CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH-HH
Q 033417           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR-RA   90 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~A   90 (119)
                      .++.++.....+..++|.+-..|.-+-.++-..+. +..+-++.+++.++-    +|.+..+|-.|-.+...+|++. .-
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-dL~~El~~l~eI~e~----npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-DLNKELEYLDEIIED----NPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHhcCcccch
Confidence            35556666666666666666666655555554443 455556666666655    5555555555555555555544 45


Q ss_pred             HHHHHHHHHhCCCcHHHH
Q 033417           91 LTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~  108 (119)
                      +..++.++..+..|.-+|
T Consensus       133 Lef~~~~l~~DaKNYHaW  150 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAW  150 (318)
T ss_pred             HHHHHHHHhccccchhhh
Confidence            555555555555444444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.90  E-value=0.22  Score=37.64  Aligned_cols=60  Identities=8%  Similarity=0.024  Sum_probs=51.2

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..-..+-|.-+|..|  +|.++.-.-....++    .| .+.+|.-+|.|.+...+|.+|-.++...
T Consensus       462 ian~LaDAEyLysqg--ey~kc~~ys~WL~~i----aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  462 IANFLADAEYLYSQG--EYHKCYLYSSWLTKI----AP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHh----CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            344455667778888  999999999999999    88 8999999999999999999999987763

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.78  E-value=0.62  Score=38.91  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=41.6

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK--LCPTNVKVVI  109 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~a~~  109 (119)
                      ..+......+.+.|  ++++|...+.+.++..   .+.+...|..+..+|.+.|++++|+..|++..+  +.| +...|.
T Consensus       650 ~TynsLI~a~~k~G--~~eeA~~l~~eM~k~G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN  723 (1060)
T PLN03218        650 VFFSALVDVAGHAG--DLDKAFEILQDARKQG---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMN  723 (1060)
T ss_pred             HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence            34444445555555  5555555555554431   123445566666666677777777777666544  334 344555


Q ss_pred             HHHhcc
Q 033417          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .+...|
T Consensus       724 ~LI~gy  729 (1060)
T PLN03218        724 ALITAL  729 (1060)
T ss_pred             HHHHHH
Confidence            554443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.74  E-value=0.16  Score=35.18  Aligned_cols=54  Identities=19%  Similarity=0.039  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           52 AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        52 A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      |.++|.+|+.+    .|.....|+.+|.+....|+.-+|+=+|-+++-..-.++.|.-
T Consensus         1 A~~~Y~~A~~l----~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~   54 (278)
T PF10373_consen    1 AERYYRKAIRL----LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARE   54 (278)
T ss_dssp             HHHHHHHHHHH-----TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHH
T ss_pred             CHHHHHHHHHh----CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHH
Confidence            34555555555    5555555555555555555555555555555544333333333

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=1.1  Score=32.04  Aligned_cols=86  Identities=13%  Similarity=-0.008  Sum_probs=66.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHH---------------HHhc------ccC------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTR---------------AINQ------NVL------   65 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~---------------al~~------~~~------   65 (119)
                      ..++.+.++.+....|+.+.+....+.++...|  +.+.|...+..               -|++      .|.      
T Consensus       150 ~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g--~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~  227 (304)
T COG3118         150 FGEAAPLLKQALQAAPENSEAKLLLAECLLAAG--DVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQR  227 (304)
T ss_pred             hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC--ChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            345566788888889999999999999999999  78777665544               1211      111      


Q ss_pred             ---CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           66 ---SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        66 ---~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                         .+|++..+-+.+|..+...|++++|++.+-..++.
T Consensus       228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               37999999999999999999999999988776665

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.54  E-value=1.1  Score=34.49  Aligned_cols=78  Identities=13%  Similarity=0.055  Sum_probs=64.7

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +.-+...|..-|.=-...+  ++..|-+.+++||.-    +..+.++|..-+.+-++.+..+.|...+++|+.+=|.-.+
T Consensus        69 nR~~~~~WikYaqwEesq~--e~~RARSv~ERALdv----d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq  142 (677)
T KOG1915|consen   69 NRLNMQVWIKYAQWEESQK--EIQRARSVFERALDV----DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ  142 (677)
T ss_pred             HHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhc----ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence            4444555655555555555  899999999999999    8899999999999999999999999999999999998877


Q ss_pred             HHHH
Q 033417          107 VVIL  110 (119)
Q Consensus       107 a~~~  110 (119)
                      .||.
T Consensus       143 lWyK  146 (677)
T KOG1915|consen  143 LWYK  146 (677)
T ss_pred             HHHH
Confidence            7775

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.53  E-value=0.072  Score=23.58  Aligned_cols=24  Identities=17%  Similarity=-0.096  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           72 VLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      .+++++|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355677777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.52  E-value=0.72  Score=37.29  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=49.9

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...+...|..++..|  ++++|...+.+++.+....    .+....++..+|.++...|++++|...+.+++.+
T Consensus       531 ~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        531 LWSLLQQSEILFAQG--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            345567788888888  8999999998888763221    1222344667788888889999999999988775

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.42  E-value=0.19  Score=39.69  Aligned_cols=65  Identities=8%  Similarity=-0.155  Sum_probs=57.2

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ++..|......+...|  +++.|...+++.+.+    .|++...|..++.+|.+.|++++|...+++..+.
T Consensus       493 ~~~~~~~Ll~a~~~~g--~~~~a~~~~~~l~~~----~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        493 TVNMWAALLTACRIHK--NLELGRLAAEKLYGM----GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CHHHHHHHHHHHHHcC--CcHHHHHHHHHHhCC----CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3556888888888888  899999999999999    8988889999999999999999999999886543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.17  E-value=1.1  Score=33.38  Aligned_cols=95  Identities=12%  Similarity=0.015  Sum_probs=64.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc----------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      +++..+.-..+...+|+....|.-+=.+.-...          ..-+++-+.....+|..    +|+...+|..|..++.
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~----npksY~aW~hR~w~L~  120 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV----NPKSYGAWHHRKWVLQ  120 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh----CchhHHHHHHHHHHHH
Confidence            445566666677777877777664444433221          00234556666777777    8889999999988888


Q ss_pred             HhcC--HHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           83 LLGN--YRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        83 ~l~~--~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +.+.  +..-+..|.++++.||.|-.+|.-+
T Consensus       121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR  151 (421)
T KOG0529|consen  121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYR  151 (421)
T ss_pred             hCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence            7664  6888888999999999887666433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.04  E-value=0.76  Score=37.16  Aligned_cols=68  Identities=15%  Similarity=0.097  Sum_probs=51.9

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...+...|..+...|  ++++|...+.+++.......+  .....+.++|.+++..|++++|...+++++.+
T Consensus       491 ~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        491 IVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            345667788888888  899999999999876322111  12346677889999999999999999998886

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=94.04  E-value=0.2  Score=37.27  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=44.2

Q ss_pred             HHhHHHHHhchHhHHHHHHHHHHHHhcc-----cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           36 EKGNEYVKKGKKHYYDAIDCYTRAINQN-----VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+...+.-.|  ||..|+..++. |++.     .++.+-..+.++..|.||+.+++|.+|+..+..+|-
T Consensus       127 gLlRvh~LLG--DY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLG--DYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhcc--CHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667  88888877644 2221     122445567899999999999999999999999774

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.00  E-value=0.12  Score=25.30  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +.+..+|.+.+..+  +|++|+..|.++|++
T Consensus         2 dv~~~Lgeisle~e--~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENE--NFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            45667888888888  899999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.99  E-value=0.53  Score=33.34  Aligned_cols=91  Identities=15%  Similarity=0.082  Sum_probs=78.8

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHH-HHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYY-DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++-++.+...+|++-+.|..+-.+.-..|  ++. .-+......+..    +..+..+|..|--|....+.|+.-+.+
T Consensus        96 ~El~~l~eI~e~npKNYQvWHHRr~ive~l~--d~s~rELef~~~~l~~----DaKNYHaWshRqW~~r~F~~~~~EL~y  169 (318)
T KOG0530|consen   96 KELEYLDEIIEDNPKNYQVWHHRRVIVELLG--DPSFRELEFTKLMLDD----DAKNYHAWSHRQWVLRFFKDYEDELAY  169 (318)
T ss_pred             HHHHHHHHHHHhCccchhHHHHHHHHHHHhc--CcccchHHHHHHHHhc----cccchhhhHHHHHHHHHHhhHHHHHHH
Confidence            5667788888889999999999998888888  787 788888899998    899999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHH
Q 033417           94 TEEALKLCPTNVKVVILC  111 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~  111 (119)
                      +.+.|+.+-.|-.||..+
T Consensus       170 ~~~Lle~Di~NNSAWN~R  187 (318)
T KOG0530|consen  170 ADELLEEDIRNNSAWNQR  187 (318)
T ss_pred             HHHHHHHhhhccchhhee
Confidence            999999887777776554

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=93.97  E-value=0.41  Score=30.50  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      ++.....+...+..|  +|.-|+.+.+.++..    +|++..+...++.++..+|.-.
T Consensus        70 ~d~vl~~A~~~~~~g--d~~wA~~L~d~l~~a----dp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   70 ADKVLERAQAALAAG--DYQWAAELLDHLVFA----DPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHHHhc
Confidence            566778888899988  999999999999999    9999999999999988877543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=0.017  Score=41.88  Aligned_cols=83  Identities=23%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CC------------CcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LS------------DSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~------------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      .....+.|+..|+.+  +|..|...|.+++....   +.            .+.-...+.+.+.|-++++.+..|+-.+.
T Consensus       222 ~~~~k~~~~~~~kk~--~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~  299 (372)
T KOG0546|consen  222 EEKKKNIGNKEFKKQ--RYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN  299 (372)
T ss_pred             hhhhhccchhhhhhc--cHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence            455677888999988  89999999988875521   00            01112234445555555555555555555


Q ss_pred             HHHHhCCCcHHHHHHHHhcc
Q 033417           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++..++...++||++++++
T Consensus       300 ~~~~~~~s~tka~~Rr~~~~  319 (372)
T KOG0546|consen  300 EALRDERSKTKAHYRRGQAY  319 (372)
T ss_pred             cccccChhhCcHHHHHHhHH
Confidence            55555555555555555544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.90  E-value=1.1  Score=33.96  Aligned_cols=81  Identities=15%  Similarity=0.085  Sum_probs=59.6

Q ss_pred             hhhHHHHHHHHH----hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCH-
Q 033417           14 ESEKADLDAIAA----LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNY-   87 (119)
Q Consensus        14 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~-   87 (119)
                      +++++.++....    ..+-....+++.|..++-..  +|++|...+.+.++.    +.+.. ...+..|.|+..+|+. 
T Consensus       284 ~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~--~w~~A~~~f~~L~~~----s~WSka~Y~Y~~a~c~~~l~~~~  357 (468)
T PF10300_consen  284 EEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH--DWEEAAEYFLRLLKE----SKWSKAFYAYLAAACLLMLGREE  357 (468)
T ss_pred             HHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc--hHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccch
Confidence            345555554332    12334566889999999988  999999999999988    65544 4556678899999999 


Q ss_pred             ------HHHHHHHHHHHHh
Q 033417           88 ------RRALTDTEEALKL  100 (119)
Q Consensus        88 ------~~A~~~~~~al~l  100 (119)
                            ++|...++++-.+
T Consensus       358 ~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  358 EAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence                  8888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03077 Protein ECB2; Provisional

Probab=93.72  E-value=0.46  Score=38.43  Aligned_cols=78  Identities=6%  Similarity=-0.046  Sum_probs=60.1

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++.+.++.. .+.|+ +..|...-..+...|  +.+.+....++.+++    .|+++..|..++.+|...|+|++|...
T Consensus       642 ~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~--~~e~~e~~a~~l~~l----~p~~~~~y~ll~n~ya~~g~~~~a~~v  713 (857)
T PLN03077        642 TEAYNFINKM-PITPD-PAVWGALLNACRIHR--HVELGELAAQHIFEL----DPNSVGYYILLCNLYADAGKWDEVARV  713 (857)
T ss_pred             HHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhh----CCCCcchHHHHHHHHHHCCChHHHHHH
Confidence            3444444443 24554 556666666666666  889999999999999    999999999999999999999999998


Q ss_pred             HHHHHH
Q 033417           94 TEEALK   99 (119)
Q Consensus        94 ~~~al~   99 (119)
                      .+.-.+
T Consensus       714 r~~M~~  719 (857)
T PLN03077        714 RKTMRE  719 (857)
T ss_pred             HHHHHH
Confidence            876544

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=1.2  Score=33.34  Aligned_cols=100  Identities=12%  Similarity=0.003  Sum_probs=79.7

Q ss_pred             CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----CH
Q 033417           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----NY   87 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----~~   87 (119)
                      +.++.......+...+|+.--+|..+..++.+.+-.+|..=+....++++.    +|.+-.+|..|=.+.....    ..
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~----D~RNfh~W~YRRfV~~~~~~~~~~~  165 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ----DPRNFHAWHYRRFVVEQAERSRNLE  165 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----CcccccchHHHHHHHHHHhcccccc
Confidence            345666777888889999999999999999987753478899999999999    8878777766655544432    36


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           88 RRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .+-+..+.++|.-++.|..+|..+...+
T Consensus       166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  166 KEELEFTTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             hhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence            7888999999999999999998876554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.56  E-value=1  Score=34.49  Aligned_cols=74  Identities=14%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHH
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRALTDTEEALKL-CPTNVKVVI  109 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~a~~  109 (119)
                      .-...|+++.+.|  +.++|+..+...++.    .|.  +..++.++..|++.++.|.++.....+==++ -|......|
T Consensus       261 ~KrRLAmCarklG--r~~EAIk~~rdLlke----~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y  334 (539)
T PF04184_consen  261 AKRRLAMCARKLG--RLREAIKMFRDLLKE----FPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY  334 (539)
T ss_pred             hHHHHHHHHHHhC--ChHHHHHHHHHHHhh----CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence            3457899999999  899999999999987    553  5678999999999999999988877763222 245555555


Q ss_pred             HHH
Q 033417          110 LCS  112 (119)
Q Consensus       110 ~~a  112 (119)
                      ..|
T Consensus       335 TaA  337 (539)
T PF04184_consen  335 TAA  337 (539)
T ss_pred             HHH
Confidence            444

The molecular function of this protein is uncertain.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.47  E-value=1.8  Score=30.26  Aligned_cols=90  Identities=18%  Similarity=0.100  Sum_probs=52.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHH------HHHHhHHHHHh-chHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIE------LKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLL   83 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~   83 (119)
                      ++++...+++...+..+...-      ....|..+-.. .  ++++||..|+++-+.-..  ....--.++...|..-..
T Consensus        89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~--d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQ--DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHH--HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            345555666555554332222      22455555443 3  789999999998776111  011112234444444556


Q ss_pred             hcCHHHHHHHHHHHHHhCCCc
Q 033417           84 LGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +++|.+||..|+++..-.-+|
T Consensus       167 leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  167 LEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            899999999999987654433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.44  E-value=0.69  Score=31.33  Aligned_cols=73  Identities=15%  Similarity=0.008  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      -.++..+..+++..|..+  ++..|...++...+..|.-.  .+......|.++-..|++.+|.+.++.++..-|+.
T Consensus       121 A~d~a~lLglA~Aqfa~~--~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         121 AHDAAMLLGLAQAQFAIQ--EFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             CCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            345677888999999999  99999999999998843322  23344445677888999999999999999988864

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.18  E-value=0.65  Score=26.35  Aligned_cols=32  Identities=28%  Similarity=0.281  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .++..+..++..+=+.|  ++.+|+.+|+.+++.
T Consensus         4 ~~A~~~a~~AVe~D~~g--r~~eAi~~Y~~aIe~   35 (75)
T cd02682           4 EMARKYAINAVKAEKEG--NAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence            45667777888888888  788888888888876

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.08  E-value=0.92  Score=25.72  Aligned_cols=21  Identities=14%  Similarity=0.396  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHH
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSV   72 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~   72 (119)
                      .|.+|++.+.+++..    .|+.+.
T Consensus        28 ~Y~~aIe~L~q~~~~----~pD~~~   48 (75)
T cd02682          28 NYKKAIEVLSQIVKN----YPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHHHh----CCChHH
Confidence            355556666666655    555444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=92.90  E-value=1.7  Score=30.61  Aligned_cols=73  Identities=15%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-GNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .|....+..-+.+  ..+.|-..|.+|+..    .+....+|...|..-+.. ++.+.|...|+.+++.-|.++..|..-
T Consensus         3 v~i~~m~~~~r~~--g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y   76 (280)
T PF05843_consen    3 VWIQYMRFMRRTE--GIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY   76 (280)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhC--ChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            3555555565655  588888899999876    667788899888887775 555669999999999999887776543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.89  E-value=1.6  Score=32.29  Aligned_cols=72  Identities=7%  Similarity=0.031  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhHHHHH---hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh---------cCHHHHHHHHHH
Q 033417           29 SAAIELKEKGNEYVK---KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---------GNYRRALTDTEE   96 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~---~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---------~~~~~A~~~~~~   96 (119)
                      +....-...|.++-+   .|  +.++|+..+..++..+   .+.+++.+.-.|.+|-.+         ...++|+..|++
T Consensus       177 ~~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~---~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k  251 (374)
T PF13281_consen  177 NQHNIKFQYAFALNRRNKPG--DREKALQILLPVLESD---ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK  251 (374)
T ss_pred             cchHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence            344555677777777   78  8999999999965442   567778888888887652         357899999999


Q ss_pred             HHHhCCCcH
Q 033417           97 ALKLCPTNV  105 (119)
Q Consensus        97 al~l~p~~~  105 (119)
                      +.+++|+..
T Consensus       252 gFe~~~~~Y  260 (374)
T PF13281_consen  252 GFEIEPDYY  260 (374)
T ss_pred             HHcCCcccc
Confidence            999998653

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.80  E-value=2.5  Score=33.05  Aligned_cols=92  Identities=14%  Similarity=0.079  Sum_probs=68.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHH------HHHHHHhcC
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR------AHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------a~~~~~l~~   86 (119)
                      +..+.-.+......+|..+....+.|......|. .+..++.....+...    .|.+..+...+      |...-.+|+
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~-~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~  157 (620)
T COG3914          83 STLAFLAKRIPLSVNPENCPAVQNLAAALELDGL-QFLALADISEIAEWL----SPDNAEFLGHLIRFYQLGRYLKLLGR  157 (620)
T ss_pred             chhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh-HHHHHHHHHHHHHhc----CcchHHHHhhHHHHHHHHHHHHHhcc
Confidence            3344556677777899999999999999988773 444445555558888    77776666655      777777899


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHH
Q 033417           87 YRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ..++.....++.++.|.++...-
T Consensus       158 ~~~~~~~l~~~~d~~p~~~~~~~  180 (620)
T COG3914         158 TAEAELALERAVDLLPKYPRVLG  180 (620)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHh
Confidence            99999999999999998865543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.68  E-value=1.7  Score=30.62  Aligned_cols=31  Identities=29%  Similarity=0.401  Sum_probs=18.5

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN   61 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~   61 (119)
                      -+...+.++-..|+.-+ +|++|-..+.++++
T Consensus        29 gaas~yekAAvafRnAk-~feKakdcLlkA~~   59 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAK-KFEKAKDCLLKASK   59 (308)
T ss_pred             hhHHHHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence            34455556666665554 67777666666663

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.65  E-value=3.1  Score=32.13  Aligned_cols=86  Identities=16%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH--HHhcCHHHHHHHHHHH
Q 033417           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN--LLLGNYRRALTDTEEA   97 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~--~~l~~~~~A~~~~~~a   97 (119)
                      .++...-.|.++.+|..-|..--..|  +.+.|-..|+-||+.    ...+..-+.-.+.+-  ...|.++.|...|++.
T Consensus       460 YEkfle~~Pe~c~~W~kyaElE~~Lg--dtdRaRaifelAi~q----p~ldmpellwkaYIdFEi~~~E~ekaR~LYerl  533 (677)
T KOG1915|consen  460 YEKFLEFSPENCYAWSKYAELETSLG--DTDRARAIFELAISQ----PALDMPELLWKAYIDFEIEEGEFEKARALYERL  533 (677)
T ss_pred             HHHHHhcChHhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhcC----cccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence            33344447888888888888888888  888888888888886    333332223334433  3468888888888888


Q ss_pred             HHhCCCcHHHHHHHH
Q 033417           98 LKLCPTNVKVVILCS  112 (119)
Q Consensus        98 l~l~p~~~~a~~~~a  112 (119)
                      |+..+ +.+.|..-|
T Consensus       534 L~rt~-h~kvWisFA  547 (677)
T KOG1915|consen  534 LDRTQ-HVKVWISFA  547 (677)
T ss_pred             HHhcc-cchHHHhHH
Confidence            88765 444655544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.93  E-value=1.2  Score=31.11  Aligned_cols=63  Identities=24%  Similarity=0.300  Sum_probs=36.5

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH------HHHHHHHHHHHH-hcCHHHHHHHHHHHHHh
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS------VLYANRAHVNLL-LGNYRRALTDTEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~a~~~~~-l~~~~~A~~~~~~al~l  100 (119)
                      +..+.+.++++ +.+  +..+|+.++.++|++    -.+-.      ..+..+|.+|.. +.++++||.+|+++-+.
T Consensus        74 at~YveA~~cy-kk~--~~~eAv~cL~~aieI----yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   74 ATTYVEAANCY-KKV--DPEEAVNCLEKAIEI----YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHHHHHHHh-hcc--ChHHHHHHHHHHHHH----HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34444555444 444  578888888888877    32222      222344555543 46777777777777654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.93  E-value=0.7  Score=33.11  Aligned_cols=52  Identities=13%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +.++|+..|.+.+++++....+-..++-.+-.+++++++|.+.+..|++.+.
T Consensus        42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            6899999999999995443334445666777789999999999999998875

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.80  E-value=1.4  Score=30.54  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             HHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417           39 NEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        39 ~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      ..+.+.+  ..+++|.....-++-    +|.+......+=..+...|+|++|...++-+-++.|++.
T Consensus         9 seLL~~~--sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDN--SLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhc--cHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3456666  789999999999999    888888777777788889999999999999999999763

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=91.61  E-value=0.12  Score=37.61  Aligned_cols=70  Identities=19%  Similarity=0.103  Sum_probs=55.2

Q ss_pred             HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +.+.+.++.+  .+..|+..-..++..    ++....+++.++..+..+.++++|+.+...+....|++....-.+
T Consensus       280 n~~~~~lk~~--~~~~a~~~~~~~~~~----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~  349 (372)
T KOG0546|consen  280 NLAAVGLKVK--GRGGARFRTNEALRD----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL  349 (372)
T ss_pred             chHHhccccc--CCCcceecccccccc----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence            3455555555  566666666666666    788889999999999999999999999999999999887655443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.59  E-value=0.67  Score=35.66  Aligned_cols=92  Identities=17%  Similarity=0.078  Sum_probs=74.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+...+.+.......|+.+.-+...+..+...|  +-+.|+..++..++  ++-..-....++.+|.++.-+.+|..|..
T Consensus       249 ~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g--~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad  324 (546)
T KOG3783|consen  249 GEECEKALKKYRKRYPKGALWLLMEARILSIKG--NSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAAD  324 (546)
T ss_pred             HHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcc--cHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345556777888889999999999999999988  78888888888776  22245667889999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHH
Q 033417           93 DTEEALKLCPTNVKVVI  109 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~  109 (119)
                      ++....++.. +..++|
T Consensus       325 ~~~~L~desd-WS~a~Y  340 (546)
T KOG3783|consen  325 SFDLLRDESD-WSHAFY  340 (546)
T ss_pred             HHHHHHhhhh-hhHHHH
Confidence            9999888775 444444

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=91.31  E-value=0.8  Score=25.13  Aligned_cols=31  Identities=39%  Similarity=0.532  Sum_probs=24.1

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...=+.|  ++++|+.+|.++++.
T Consensus         4 ~A~~~~~~Av~~D~~g--~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    4 KAIELIKKAVEADEAG--NYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence            3556667777777777  899999999888876

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.06  E-value=2  Score=29.72  Aligned_cols=65  Identities=22%  Similarity=0.142  Sum_probs=47.2

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc---ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ---NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .....+.|..++..|  +|++|+..|+.+...   +.+ ......+...+..|...+|+.++.+..+=+.+
T Consensus       178 ~~l~~~~A~ey~~~g--~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLG--DYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            334558899999998  899999999988644   122 22334566677889999999998888776554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.90  E-value=0.54  Score=33.14  Aligned_cols=62  Identities=16%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      .+.+....+++..++|.++..+...|.+|.+.|  .+..|+..++..++.    .|+.+.+-.-+...
T Consensus       197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~--c~~vAl~dl~~~~~~----~P~~~~a~~ir~~l  258 (269)
T COG2912         197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG--CYHVALEDLSYFVEH----CPDDPIAEMIRAQL  258 (269)
T ss_pred             hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC--CchhhHHHHHHHHHh----CCCchHHHHHHHHH
Confidence            455667788888999999999999999999999  899999999999999    77777766555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.51  E-value=2.4  Score=28.71  Aligned_cols=63  Identities=16%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+....+...+..+  ++++|+..+.+++.. +.+..-.+.+-.++|.+.+..|.+++|+...+..
T Consensus        90 laaL~lAk~~ve~~--~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          90 LAALELAKAEVEAN--NLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHHhhc--cHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            34567788888888  899999999999976 1112223456778899999999999999876653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.22  E-value=1  Score=22.73  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=21.7

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           75 ANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +++|.+|..+|+++.|....++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678899999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.02  E-value=6.2  Score=30.69  Aligned_cols=76  Identities=17%  Similarity=0.058  Sum_probs=51.8

Q ss_pred             HHHHHHHHhHHHHHhc--hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCC
Q 033417           30 AAIELKEKGNEYVKKG--KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p~  103 (119)
                      .+.+.+..|.++....  + ++..|..+|..|...      ....+.+++|.|+..    ..+...|+..++++.+.+  
T Consensus       324 ~~~a~~~lg~~~~~g~~~~-d~~~A~~yy~~Aa~~------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--  394 (552)
T KOG1550|consen  324 NPDAQYLLGVLYETGTKER-DYRRAFEYYSLAAKA------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--  394 (552)
T ss_pred             CchHHHHHHHHHHcCCccc-cHHHHHHHHHHHHHc------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--
Confidence            3555666777766543  3 678888888888776      456667777777764    246788888888888876  


Q ss_pred             cHHHHHHHHhc
Q 033417          104 NVKVVILCSGS  114 (119)
Q Consensus       104 ~~~a~~~~a~~  114 (119)
                      ++.+.+.++..
T Consensus       395 ~~~A~~~~~~~  405 (552)
T KOG1550|consen  395 NPSAAYLLGAF  405 (552)
T ss_pred             ChhhHHHHHHH
Confidence            55656555543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.00  E-value=1  Score=33.55  Aligned_cols=66  Identities=21%  Similarity=0.124  Sum_probs=47.8

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--Cccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSEN----SVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+..+|..+-+..  |+++|+-+..+|.++-...  +..+    ..+++.++.++..+|+..+|.++|+++.++
T Consensus       164 vcv~Lgslf~~l~--D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  164 VCVSLGSLFAQLK--DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             hhhhHHHHHHHHH--hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4566777777766  8888888888887762221  1111    346677888888999999999999998775

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.94  E-value=1.1  Score=25.48  Aligned_cols=31  Identities=29%  Similarity=0.560  Sum_probs=24.2

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|..+=+.|  +|++|+.+|.++|+.
T Consensus         5 ~a~~l~~~Ave~D~~g--~y~eAl~~Y~~aie~   35 (77)
T cd02683           5 AAKEVLKRAVELDQEG--RFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            3566677777777878  899999998888866

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=89.85  E-value=3.5  Score=33.81  Aligned_cols=90  Identities=18%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++......+++-..+-..-++|-..+  .+++|...|++++..    .|. ....+..=.+|.+-+.|.+--..
T Consensus        60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~--~~d~~~~~Ye~~~~~----~P~-eell~~lFmayvR~~~yk~qQka  132 (932)
T KOG2053|consen   60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG--KLDEAVHLYERANQK----YPS-EELLYHLFMAYVREKSYKKQQKA  132 (932)
T ss_pred             hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh--hhhHHHHHHHHHHhh----CCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677766667777788888888998988  799999999999999    888 66667777888888888877666


Q ss_pred             HHHHHHhCCCcHHHHHH
Q 033417           94 TEEALKLCPTNVKVVIL  110 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~  110 (119)
                      .=+.-+.-|.++--++.
T Consensus       133 a~~LyK~~pk~~yyfWs  149 (932)
T KOG2053|consen  133 ALQLYKNFPKRAYYFWS  149 (932)
T ss_pred             HHHHHHhCCcccchHHH
Confidence            66666677776654443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.82  E-value=1.4  Score=21.23  Aligned_cols=29  Identities=24%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHH--HHHHHhc
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDC--YTRAINQ   62 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~--~~~al~~   62 (119)
                      +.+...|-.+...|  ++++|+..  |.-+..+
T Consensus         2 e~~y~~a~~~y~~~--ky~~A~~~~~y~~l~~l   32 (36)
T PF07720_consen    2 EYLYGLAYNFYQKG--KYDEAIHFFQYAFLCAL   32 (36)
T ss_dssp             HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHh
Confidence            45677788889988  89999999  4477666

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.69  E-value=1.8  Score=27.58  Aligned_cols=46  Identities=20%  Similarity=0.152  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           71 SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ......++...+..|++.-|...++.++..+|+|.++...++.++.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~  115 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE  115 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            4455677888889999999999999999999999999988887764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.59  E-value=0.98  Score=31.48  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV   64 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~   64 (119)
                      .+-+.+.++..+.|..+..|...|.-..+.|  +++.|...|++.++++|
T Consensus        13 aaaely~qal~lap~w~~gwfR~g~~~ekag--~~daAa~a~~~~L~ldp   60 (287)
T COG4976          13 AAAELYNQALELAPEWAAGWFRLGEYTEKAG--EFDAAAAAYEEVLELDP   60 (287)
T ss_pred             HHHHHHHHHhhcCchhhhhhhhcchhhhhcc--cHHHHHHHHHHHHcCCc
Confidence            4667889999999999999999999999999  89999999999999943

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.54  E-value=6  Score=34.32  Aligned_cols=91  Identities=13%  Similarity=0.051  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++.+.++...+.-......|...|..+++..  +-++|-+.+.+|+.-.|+  .+...+....|...++.|+.+.+...|
T Consensus      1548 ~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n--e~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLEFk~GDaeRGRtlf 1623 (1710)
T KOG1070|consen 1548 EADELLRLMLKKFGQTRKVWIMYADFLLRQN--EAEAARELLKRALKSLPK--QEHVEFISKFAQLEFKYGDAERGRTLF 1623 (1710)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHhccc--HHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHHhhcCCchhhHHHH
Confidence            3444455544444455677778888888776  667777778888877333  235666677777777888888888888


Q ss_pred             HHHHHhCCCcHHHHH
Q 033417           95 EEALKLCPTNVKVVI  109 (119)
Q Consensus        95 ~~al~l~p~~~~a~~  109 (119)
                      .-.+.-.|.-.+.|.
T Consensus      1624 Egll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1624 EGLLSAYPKRTDLWS 1638 (1710)
T ss_pred             HHHHhhCccchhHHH
Confidence            777777776555553

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=89.47  E-value=1.1  Score=19.82  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           86 NYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .++.+...|++++...|.++..|...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34555555555555555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.45  E-value=0.96  Score=34.18  Aligned_cols=57  Identities=19%  Similarity=0.065  Sum_probs=50.1

Q ss_pred             HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .....+|.+.+  +.+.|+..-.+.|.+    +|....-+...|.|+..+.+|.+|-..+--+
T Consensus       232 tklv~CYL~~r--kpdlALnh~hrsI~l----nP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  232 TKLVTCYLRMR--KPDLALNHSHRSINL----NPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHhhhhcC--CCchHHHHHhhhhhc----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889988  799999999999999    9999999999999999999999998765443

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.33  E-value=1.4  Score=25.03  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=25.4

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...+..+=+.|  +|++|+.+|..+|+.
T Consensus         5 ~Ai~~a~~Ave~D~~g--~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEG--RYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence            4666777777787888  899999999999877

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.67  E-value=2.7  Score=30.36  Aligned_cols=40  Identities=23%  Similarity=0.105  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           72 VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .++...|..++..|.+.+|++.+++++.++|-+...+..+
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~l  319 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGL  319 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHH
Confidence            3445556677777888888888888888887665555444

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.37  E-value=6.5  Score=27.16  Aligned_cols=51  Identities=16%  Similarity=0.134  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417           49 YYDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK   99 (119)
Q Consensus        49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~   99 (119)
                      -+.|...|++|+.+.    |..+|..-.+..|.+..++. +|+.++|+..++++++
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            477888888888762    33466666677777877765 8999999999988875

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=88.26  E-value=1.9  Score=35.68  Aligned_cols=56  Identities=18%  Similarity=0.248  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      .+++|+..|+..-.     .|.-|.=|...|.+|.++|+|+|-+.++.-|++--|.+|..-
T Consensus       534 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        534 DFTQALSEFSYLHG-----GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHHHHHHHhcC-----CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            47777777776544     367778899999999999999999999999999888877543

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.25  E-value=1.7  Score=24.66  Aligned_cols=32  Identities=28%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN   63 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~   63 (119)
                      .+..+...|...=..|  +|++|+..|.++|+.+
T Consensus         5 kai~Lv~~A~~eD~~g--ny~eA~~lY~~ale~~   36 (75)
T cd02680           5 RAHFLVTQAFDEDEKG--NAEEAIELYTEAVELC   36 (75)
T ss_pred             HHHHHHHHHHHhhHhh--hHHHHHHHHHHHHHHH
Confidence            3556666676666767  8999999999999883

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=87.80  E-value=5.7  Score=31.79  Aligned_cols=92  Identities=18%  Similarity=0.157  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .....+++..+.-..+..-.+-|+.+-...  -|+++...|+++|.+.+++.- +....|.......+.-.+.+.|..-|
T Consensus       496 tk~vYdriidLriaTPqii~NyAmfLEeh~--yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  496 TKAVYDRIIDLRIATPQIIINYAMFLEEHK--YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhH--HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            334556666555555666677777777766  899999999999998655322 33445555555555556789999999


Q ss_pred             HHHHHhCC-CcHHHHH
Q 033417           95 EEALKLCP-TNVKVVI  109 (119)
Q Consensus        95 ~~al~l~p-~~~~a~~  109 (119)
                      ++||+..| .+.+..|
T Consensus       574 EqaL~~Cpp~~aKtiy  589 (835)
T KOG2047|consen  574 EQALDGCPPEHAKTIY  589 (835)
T ss_pred             HHHHhcCCHHHHHHHH
Confidence            99999887 3344443

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.69  E-value=1.9  Score=24.16  Aligned_cols=31  Identities=35%  Similarity=0.476  Sum_probs=25.0

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...=..|  +|++|+.+|.++++.
T Consensus         5 ~A~~l~~~Av~~D~~g--~y~eA~~~Y~~aie~   35 (75)
T cd02678           5 KAIELVKKAIEEDNAG--NYEEALRLYQHALEY   35 (75)
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            3566777777777888  899999999998876

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.50  E-value=3.3  Score=32.18  Aligned_cols=77  Identities=19%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             HHHHHHhHHHHHhc--hH-hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcH
Q 033417           32 IELKEKGNEYVKKG--KK-HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        32 ~~~~~~g~~~~~~g--~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~  105 (119)
                      .+....|.+|.+..  .+ ++..|+..|.++.+.      .++.+.+.+|.++..-.   ++..|...|..|.+.  .+.
T Consensus       289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~  360 (552)
T KOG1550|consen  289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHI  360 (552)
T ss_pred             ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CCh
Confidence            35667888887742  12 578899999999988      56778888999988654   578999999998775  579


Q ss_pred             HHHHHHHhccc
Q 033417          106 KVVILCSGSHP  116 (119)
Q Consensus       106 ~a~~~~a~~~~  116 (119)
                      .+.+++|.+|.
T Consensus       361 ~A~~~la~~y~  371 (552)
T KOG1550|consen  361 LAIYRLALCYE  371 (552)
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=86.61  E-value=12  Score=28.39  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---------------------------   65 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------   65 (119)
                      +..+........++.|+.+-+-...+..+|+.|  +..++-..++.+.+.+|-                           
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~--~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~  322 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDG--NLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLE  322 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc--chhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            345666777777888999999999999999999  899988888888877431                           


Q ss_pred             -CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417           66 -SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        66 -~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                       -.|++....+.++..-+.-|++..|....+.+..+.|.
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr  361 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR  361 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence             13455555555555555556666666666666665553

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.53  E-value=2.6  Score=23.04  Aligned_cols=27  Identities=30%  Similarity=0.292  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           74 YANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        74 ~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +...|.-.-..|++++|+..|.++++.
T Consensus         8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    8 LIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            344455555567777777777776653

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.28  E-value=2.5  Score=23.80  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=24.1

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=..|  +|++|+.+|.++|+.
T Consensus         6 Ai~lv~~Av~~D~~g--~y~eA~~lY~~ale~   35 (75)
T cd02684           6 AIALVVQAVKKDQRG--DAAAALSLYCSALQY   35 (75)
T ss_pred             HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            556667777777777  899999999999876

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=86.25  E-value=5  Score=31.02  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417           51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      .-...|+.|...    -+.++.+|.+-..-..+.+.+.+.-..|.+++..+|+++..|...|.
T Consensus        89 rIv~lyr~at~r----f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~  147 (568)
T KOG2396|consen   89 RIVFLYRRATNR----FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK  147 (568)
T ss_pred             HHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh
Confidence            335668888888    77889998887666666677999999999999999999999876654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.08  E-value=6.1  Score=29.34  Aligned_cols=80  Identities=10%  Similarity=-0.110  Sum_probs=55.3

Q ss_pred             HHhHHHHHhchHhHHHHHHHHHHHHhcccC-CCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHH-HHhCCCcHHHHHH
Q 033417           36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SDSENSVLYANRAHVNLL---LGNYRRALTDTEEA-LKLCPTNVKVVIL  110 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~a~~~~~---l~~~~~A~~~~~~a-l~l~p~~~~a~~~  110 (119)
                      +.-..|-...  +|+.-+...+..-.+ |. .-+..+.+.+..|.++-+   .|+.++|+..+..+ ..-++.+++.+-.
T Consensus       146 ~lllSyRdiq--dydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  146 NLLLSYRDIQ--DYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHhhhhh--hHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3334444444  777777766554333 21 134456677788888888   89999999999995 4566778999988


Q ss_pred             HHhcccCC
Q 033417          111 CSGSHPNQ  118 (119)
Q Consensus       111 ~a~~~~~~  118 (119)
                      .|.+|-..
T Consensus       223 ~GRIyKD~  230 (374)
T PF13281_consen  223 LGRIYKDL  230 (374)
T ss_pred             HHHHHHHH
Confidence            88887544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.83  E-value=10  Score=26.87  Aligned_cols=53  Identities=17%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHhcc-cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           48 HYYDAIDCYTRAINQN-VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+.++..+|+++..+= ....|+.+..-..++.=.+...++++|++.|++++.+
T Consensus        86 klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen   86 KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV  139 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            4666666666665441 0112333333344444444555666666666665543

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=85.81  E-value=12  Score=27.76  Aligned_cols=85  Identities=15%  Similarity=0.123  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc--------------C-----CCcccHHH-
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV--------------L-----SDSENSVL-   73 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--------------~-----~~~~~~~~-   73 (119)
                      ++-+.....+..+||+-+.++.-++..--.    -..+|...+.++++...              .     ....+... 
T Consensus       201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~----Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y  276 (556)
T KOG3807|consen  201 PARIKAAYQALEINNECATAYVLLAEEEAT----TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY  276 (556)
T ss_pred             HHHHHHHHHHHhcCchhhhHHHhhhhhhhh----hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence            344566777788899988888766554332    24555566666554310              0     01233333 


Q ss_pred             -HHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417           74 -YANRAHVNLLLGNYRRALTDTEEALKLCP  102 (119)
Q Consensus        74 -~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                       -..++.|-.++|+..||+..++-..+-.|
T Consensus       277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence             44568899999999999999988766555

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.43  E-value=9.5  Score=28.20  Aligned_cols=93  Identities=16%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .-...++.+..+.|+-...++...-.....|   .+.++...+..... |+ -.....++..+|..+.++|+..+|...|
T Consensus       314 ~I~aLYdaL~~~apSPvV~LNRAVAla~~~G---p~agLa~ve~L~~~-~~-L~gy~~~h~~RadlL~rLgr~~eAr~ay  388 (415)
T COG4941         314 AIDALYDALEQAAPSPVVTLNRAVALAMREG---PAAGLAMVEALLAR-PR-LDGYHLYHAARADLLARLGRVEEARAAY  388 (415)
T ss_pred             HHHHHHHHHHHhCCCCeEeehHHHHHHHhhh---HHhHHHHHHHhhcc-cc-cccccccHHHHHHHHHHhCChHHHHHHH
Confidence            3334455566666665555555555555556   77777766555442 11 1234567788999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHH
Q 033417           95 EEALKLCPTNVKVVILCS  112 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a  112 (119)
                      ++++.+.++-.+.-+.+.
T Consensus       389 drAi~La~~~aer~~l~~  406 (415)
T COG4941         389 DRAIALARNAAERAFLRQ  406 (415)
T ss_pred             HHHHHhcCChHHHHHHHH
Confidence            999999988776665543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=85.38  E-value=2.1  Score=33.82  Aligned_cols=75  Identities=20%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             HHhHHHHH-hchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417           36 EKGNEYVK-KGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        36 ~~g~~~~~-~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      +.+..|.+ .|  +...|+.++..|+..    .|... .-..++|+++++-|-..+|-....++|.++-..+-.++.+|.
T Consensus       611 n~aglywr~~g--n~~~a~~cl~~a~~~----~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~  684 (886)
T KOG4507|consen  611 NEAGLYWRAVG--NSTFAIACLQRALNL----APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGN  684 (886)
T ss_pred             ecccceeeecC--CcHHHHHHHHHHhcc----ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcch
Confidence            34445544 45  899999999999998    66443 446789999999999999999999999999888889999988


Q ss_pred             ccc
Q 033417          114 SHP  116 (119)
Q Consensus       114 ~~~  116 (119)
                      +++
T Consensus       685 ~~l  687 (886)
T KOG4507|consen  685 AYL  687 (886)
T ss_pred             hHH
Confidence            775

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.25  E-value=11  Score=26.72  Aligned_cols=71  Identities=21%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ....+..+...+....+.|  .++.|...+.++....+...+..+.+.+..+..+-..|+..+|+...+..+.
T Consensus       142 ~~~~~~~~l~~a~~aRk~g--~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAG--NFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCC--CcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4466778899999999999  8999999999988873332334677888889999999999999999998887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.19  E-value=7.3  Score=28.24  Aligned_cols=59  Identities=20%  Similarity=0.161  Sum_probs=48.8

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE   96 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ..+.-.+..+...|  .+.+|++..++++.+    +|.+...+..+-..+..+|+--.++..|.+
T Consensus       280 kllgkva~~yle~g--~~neAi~l~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         280 KLLGKVARAYLEAG--KPNEAIQLHQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHHcC--ChHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            33445566677777  899999999999999    999998888888889999998888887765

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=85.11  E-value=3.5  Score=33.15  Aligned_cols=78  Identities=22%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      +..+....+.+.++...|-++|..++.-..-++..    .|....++..|+.+|..+++.+-|+.+..-....+|.++.+
T Consensus        88 ~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~----~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~  163 (748)
T KOG4151|consen   88 HVVATLRSNQASCYMQLGLGEYPKAIPECELALES----QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA  163 (748)
T ss_pred             hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc----cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence            44555566677777665555899999988888888    99999999999999999999999999988888999998555


Q ss_pred             HH
Q 033417          108 VI  109 (119)
Q Consensus       108 ~~  109 (119)
                      -.
T Consensus       164 ~e  165 (748)
T KOG4151|consen  164 SE  165 (748)
T ss_pred             HH
Confidence            44

>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]

Probab=84.91  E-value=13  Score=27.34  Aligned_cols=73  Identities=15%  Similarity=0.037  Sum_probs=52.4

Q ss_pred             HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+-|+..+.++..+.-.+.-|  +|..|-.++-.-..+.+..+++...+....-..-.-+.+|+-|+++..+.-+
T Consensus       123 nf~~e~i~~lykyakfqyeCG--NY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre  195 (432)
T KOG2758|consen  123 NFTPERIETLYKYAKFQYECG--NYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE  195 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHhcc--CcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            346888899999999999888  8999887755544444444454555555554455567899999999988766

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.23  E-value=3.7  Score=23.15  Aligned_cols=30  Identities=27%  Similarity=0.370  Sum_probs=22.1

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=..|  +|++|+..|..+|+.
T Consensus         6 A~~l~~~Ave~d~~~--~y~eA~~~Y~~~i~~   35 (75)
T cd02677           6 AAELIRLALEKEEEG--DYEAAFEFYRAGVDL   35 (75)
T ss_pred             HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence            455566666666667  888888888888876

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=83.95  E-value=20  Score=31.46  Aligned_cols=91  Identities=9%  Similarity=0.031  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           15 SEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++...+.++...-|+  +......-+..-|+.|  +.+.+-..|+-.+..    .|...++|+-....-.+.|....+..
T Consensus      1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G--DaeRGRtlfEgll~a----yPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYG--DAERGRTLFEGLLSA----YPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred             HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC--CchhhHHHHHHHHhh----CccchhHHHHHHHHHHccCCHHHHHH
Confidence            455667777777777  8888888899999999  999999999999999    99999999988888889999999999


Q ss_pred             HHHHHHHh--CCCcHHHHHHH
Q 033417           93 DTEEALKL--CPTNVKVVILC  111 (119)
Q Consensus        93 ~~~~al~l--~p~~~~a~~~~  111 (119)
                      .|++++.+  .|...+-+|.+
T Consensus      1656 lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred             HHHHHHhcCCChhHhHHHHHH
Confidence            99999875  45555555443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.61  E-value=14  Score=29.67  Aligned_cols=68  Identities=16%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +...+...+.+..+|.+..  +.+.|.+.+.+|-+.    +|.++-....+..+...-|.-++|+.........
T Consensus       390 ~~~FaK~qR~l~~CYL~L~--QLD~A~E~~~EAE~~----d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  390 SDRFAKIQRALQVCYLKLE--QLDNAVEVYQEAEEV----DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hhHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhh----ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            3445667788899999988  899999999999999    9999988888888888889999999988877654

>PF12854 PPR_1: PPR repeat

Probab=83.14  E-value=3.5  Score=19.22  Aligned_cols=28  Identities=18%  Similarity=0.109  Sum_probs=22.1

Q ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417           69 ENSVLYANRAHVNLLLGNYRRALTDTEE   96 (119)
Q Consensus        69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      .+...|..+-..+.+.|+.++|++.+++
T Consensus         5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    5 PDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3556677888888899999999987764

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=82.54  E-value=6.4  Score=21.86  Aligned_cols=30  Identities=33%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=..|  ++++|+..|.++++.
T Consensus         8 A~~li~~Av~~d~~g--~~~eAl~~Y~~a~e~   37 (77)
T smart00745        8 AKELISKALKADEAG--DYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            455666677777777  788888888888766

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.15  E-value=8.1  Score=26.58  Aligned_cols=61  Identities=13%  Similarity=-0.002  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH
Q 033417           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL   83 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~   83 (119)
                      ..-+..+..+.|+....+.++|..+...|  +.-.|+-.|.+++-.    ....+.+..|+...+.+
T Consensus         2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~--~~l~avy~y~Rsl~~----~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    2 ERYYRKAIRLLPSNGNPYNQLAVLASYQG--DDLDAVYYYIRSLAV----RIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH-TTBSHHHHHHHHHHHHTT---HHHHHHHHHHHHSS----SB--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcccchhhhhcccc--chHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH
Confidence            34567788899999999999999999988  899999999999866    44457777888777666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=82.09  E-value=8.4  Score=30.89  Aligned_cols=74  Identities=19%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             HHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc-ccCCCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417           24 AALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ-NVLSDSE-NSVLYANRAHVNLLLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        24 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-~~~~~~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ...||.++..|..+...+  +|  +..+-+..|++|+.. +|+..+. -..+|...|..|-..|..+.|...+.++.+.+
T Consensus       342 LRQn~~nV~eW~kRV~l~--e~--~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~  417 (835)
T KOG2047|consen  342 LRQNPHNVEEWHKRVKLY--EG--NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP  417 (835)
T ss_pred             HhcCCccHHHHHhhhhhh--cC--ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence            345777777787776655  34  678888888888765 4443333 34678888888888888888888888888764

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.88  E-value=4.9  Score=22.80  Aligned_cols=28  Identities=29%  Similarity=0.222  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           73 LYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      -+..+|.-.=+.|+|++|+..|..+++.
T Consensus         8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           8 QFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3444555555667777777777776653

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=81.74  E-value=8  Score=22.43  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=28.5

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN   63 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~   63 (119)
                      ...++.+.|......|  ++++|+..++++|.+.
T Consensus        40 ~~~all~lA~~~~~~G--~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   40 LAYALLNLAELHRRFG--HYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence            4677889999999999  9999999999999883

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=81.70  E-value=9.2  Score=26.86  Aligned_cols=57  Identities=21%  Similarity=0.126  Sum_probs=43.9

Q ss_pred             HHhchHhHHHHHHHHHHHHhcccCCCc----ccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 033417           42 VKKGKKHYYDAIDCYTRAINQNVLSDS----ENSVLYANRAHVNLLLG-NYRRALTDTEEALKL  100 (119)
Q Consensus        42 ~~~g~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l  100 (119)
                      .+.|  +++.|..++.++-...+..+|    .....+++.|...+..+ ++++|+...++++++
T Consensus         4 ~~~~--~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQG--DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhC--CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            4566  899999999888665321133    33567888899999999 999999999999887

It is also involved in sporulation [].

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.49  E-value=3.5  Score=31.93  Aligned_cols=49  Identities=20%  Similarity=0.305  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL   83 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~   83 (119)
                      +..+.+++-|..+...|  ++..|.++|.+++..    --.+|.+|.++|.|...
T Consensus       333 ks~eilYNcG~~~Lh~g--rPl~AfqCf~~av~v----fh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHSG--RPLLAFQCFQKAVHV----FHRNPRLWLRLAECCIM  381 (696)
T ss_pred             cchhhHHhhhHHHHhcC--CcHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHH
Confidence            45788999999999999  899999999999988    78889999999998654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.27  E-value=12  Score=28.32  Aligned_cols=71  Identities=25%  Similarity=0.385  Sum_probs=51.6

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .++.-.++.+.|..|..-|  +++.|++.|.++-+.|.. .......+.|.-.+-.-+|+|.....+-.++.+.
T Consensus       146 KEsiRra~~Dl~dhy~~cG--~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  146 KESIRRALEDLGDHYLDCG--QLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             hHHHHHHHHHHHHHHHHhc--cHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            4556778899999999999  899999999998888322 1122344555555556689998888887777654

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.23  E-value=5.2  Score=22.65  Aligned_cols=26  Identities=23%  Similarity=0.189  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           74 YANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        74 ~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +...|.-.-..|+|.+|+..|.++|+
T Consensus         9 l~~~Ave~D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683           9 VLKRAVELDQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34444444455666666666665554

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.43  E-value=7.8  Score=21.46  Aligned_cols=30  Identities=27%  Similarity=0.447  Sum_probs=22.6

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=+.|  +|++|+..|..+++.
T Consensus         6 a~~l~~~Av~~D~~g--~~~~Al~~Y~~a~e~   35 (75)
T cd02656           6 AKELIKQAVKEDEDG--NYEEALELYKEALDY   35 (75)
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            445566666666777  899999999888876

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		3e-06
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		1e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-05
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		1e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		3e-04
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-04

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 23  IAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
           +A +    A E K KGNEY KKG   Y  A+    R  N+ V  D EN++LY+NRA    
Sbjct: 5   LAYINPELAQEEKNKGNEYFKKG--DYPTAM----RHYNEAVKRDPENAILYSNRAACLT 58
Query: 83  LLGNYRRALTDTEEALKLCPTNVKVVI 109
            L  ++RAL D +  ++L    +K  I
Sbjct: 59  KLMEFQRALDDCDTCIRLDSKFIKGYI 85

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A+ +K KGNE  +KG   Y  A+  YT AI +N     +++ LY+NRA     L  ++ A
Sbjct: 16  ALMVKNKGNECFQKG--DYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLA 69
Query: 91  LTDTEEALKLCPTNVK 106
           L D EE ++L PT +K
Sbjct: 70  LKDCEECIQLEPTFIK 85

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 26  LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85
           +K  +A ELKE+GN     G+K Y +A  CY RAI +N L     +V Y NRA   L + 
Sbjct: 4   MKSPSAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ 57
Query: 86  NYRRALTDTEEALKLCPTNVKV 107
              +AL D   AL+L   +VK 
Sbjct: 58  QPEQALADCRRALELDGQSVKA 79

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 30  AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89
           +A ELKE+GN     G+K Y +A  CY RAI +N L     +V Y NRA   L +    +
Sbjct: 3   SAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQ 56
Query: 90  ALTDTEEALKLCPTNVK 106
           AL D   AL+L   +VK
Sbjct: 57  ALADCRRALELDGQSVK 73

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 35  KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT 94
           KE+GN   K+G   Y +A+ CY    +Q + +  +N V Y+N+A   + LG Y +A+   
Sbjct: 8   KEQGNSLFKQGL--YREAVHCY----DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 95  EEALKLCPTNVKVVI 109
           ++ L+   T   V I
Sbjct: 62  QQGLRYTSTAEHVAI 76

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 33  ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92
           ELKEKGN+ +  G  +  DA+ CY+ AI      D  N VLY+NR+      G+Y++A  
Sbjct: 6   ELKEKGNKALSVG--NIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYE 59
Query: 93  DTEEALKLCP 102
           D  + + L P
Sbjct: 60  DGCKTVDLKP 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-21
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-20
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-20
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-20
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-20
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-20
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-16
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-15
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-10
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 82.4 bits (204), Expect = 2e-21
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 6   DAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL 65
              S              A    S+  +L+++GNE  K G   Y  A+  YT+A+  +  
Sbjct: 3   SGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGD--YGGALAAYTQALGLD-A 59

Query: 66  SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           +  + +VL+ NRA  +L L +Y +A T+  +A++    +VK
Sbjct: 60  TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 79.2 bits (196), Expect = 1e-20
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 23  IAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
           +A +    A E K KGNEY KKG   Y  A+  Y  A+ +    D EN++LY+NRA    
Sbjct: 5   LAYINPELAQEEKNKGNEYFKKGD--YPTAMRHYNEAVKR----DPENAILYSNRAACLT 58

Query: 83  LLGNYRRALTDTEEALKLCPTNVK 106
            L  ++RAL D +  ++L    +K
Sbjct: 59  KLMEFQRALDDCDTCIRLDSKFIK 82

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 78.8 bits (195), Expect = 2e-20
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
             ELKEKGN+ +  G     DA+ CY+ AI      D  N VLY+NR+      G+Y++A
Sbjct: 4   VNELKEKGNKALSVGN--IDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKA 57

Query: 91  LTDTEEALKLCPTNVK 106
             D  + + L P   K
Sbjct: 58  YEDGCKTVDLKPDWGK 73

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 78.4 bits (194), Expect = 4e-20
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 17  KADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN 76
                  + +    A+ +K KGNE  +KG   Y  A+  YT AI +    + +++ LY+N
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGD--YPQAMKHYTEAIKR----NPKDAKLYSN 55

Query: 77  RAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           RA     L  ++ AL D EE ++L PT +K
Sbjct: 56  RAACYTKLLEFQLALKDCEECIQLEPTFIK 85

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 78.5 bits (194), Expect = 4e-20
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 26  LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85
           +K  +A ELKE+GN      K  Y +A  CY RAI +    +   +V Y NRA   L + 
Sbjct: 4   MKSPSAQELKEQGNRLFVGRK--YPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQ 57

Query: 86  NYRRALTDTEEALKLCPTNVK 106
              +AL D   AL+L   +VK
Sbjct: 58  QPEQALADCRRALELDGQSVK 78

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 77.3 bits (191), Expect = 9e-20
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A E + +G EY  K    + +A+  YT  I +      E++  Y+NRA     L ++  A
Sbjct: 4   AEEARLEGKEYFTKSD--WPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEA 57

Query: 91  LTDTEEALKLCPTNVK 106
           + D  +A++  P  V+
Sbjct: 58  IADCNKAIEKDPNFVR 73

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 78.2 bits (193), Expect = 1e-19
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 24  AALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83
           A      A ELK + N+Y K     Y +AI  Y++AI      +  N++ Y NR+   L 
Sbjct: 6   ADGALKRAEELKTQANDYFKAKD--YENAIKFYSQAIEL----NPSNAIYYGNRSLAYLR 59

Query: 84  LGNYRRALTDTEEALKLCPTNVK 106
              Y  AL D   A++L    +K
Sbjct: 60  TECYGYALGDATRAIELDKKYIK 82

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 80.3 bits (198), Expect = 1e-19
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 29  SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
            +A ELKE+GN      K  Y +A  CY RAI +N       +V Y NRA   L +    
Sbjct: 2   PSAQELKEQGNRLFVGRK--YPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPE 55

Query: 89  RALTDTEEALKLCPTNVK 106
           +AL D   AL+L   +VK
Sbjct: 56  QALADCRRALELDGQSVK 73

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 76.7 bits (189), Expect = 4e-19
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
              + +LK +GN  + + +  Y  AID YT+A++        N +  +NRA      G +
Sbjct: 8   TPESDKLKSEGNAAMARKE--YSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQH 61

Query: 88  RRALTDTEEALKLCPTNVK 106
            +A  D E A  + P   K
Sbjct: 62  EKAAEDAELATVVDPKYSK 80

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 73.9 bits (182), Expect = 1e-18
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
             + KE+GN   K+G   Y +A+ CY + I        +N V Y+N+A   + LG Y +A
Sbjct: 4   FEKQKEQGNSLFKQGL--YREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQA 57

Query: 91  LTDTEEALKLCPTNVK 106
           +   ++ L+   T   
Sbjct: 58  IQMCQQGLRYTSTAEH 73

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 74.2 bits (183), Expect = 2e-18
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A  LK +GNE +K     +  A+  Y +AI      +  N+V + NRA     LGNY  A
Sbjct: 12  AERLKTEGNEQMKVEN--FEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGA 65

Query: 91  LTDTEEALKLCPTNVK 106
           + D E A+ + P   K
Sbjct: 66  VQDCERAICIDPAYSK 81

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN--------------QNVLSDSENSV 72
           K  +   L++KGNE   +    Y +AID Y  A+               + V  D +N  
Sbjct: 7   KLKSVEALRQKGNELFVQKD--YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           LYAN +   L +G+   A   + E LK   TN K
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEK 98

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 29  SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
             A ELK + N+Y K     Y +AI  Y++AI  N      N++ Y NR+   L    Y 
Sbjct: 4   KRAEELKTQANDYFKAKD--YENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYG 57

Query: 89  RALTDTEEALKLCPTNVK 106
            AL D   A++L    +K
Sbjct: 58  YALGDATRAIELDKKYIK 75

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 66.9 bits (164), Expect = 1e-15
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A++ KE GN+  KK    +  A+  Y +A       D  N     N+A V    G+Y + 
Sbjct: 4   ALKEKELGNDAYKKKD--FDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKC 57

Query: 91  LTDTEEALKLCPTNVK 106
               E+A+++   N +
Sbjct: 58  RELCEKAIEVGRENRE 73

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 66.3 bits (162), Expect = 7e-15
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 14/92 (15%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN------------QNVLSDSENSVLY 74
           K  +A ++KE+GNE+ KK +    +AI  Y  A++                  +      
Sbjct: 34  KVQSAFDIKEEGNEFFKKNE--INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91

Query: 75  ANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
            N A       +Y +A+    + LK+   NVK
Sbjct: 92  LNLATCYNKNKDYPKAIDHASKVLKIDKNNVK 123

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN-----------QNVLSDSENSVLYA 75
           K   +  +KE+G  Y K+GK  Y  A+  Y + ++           +   + +     + 
Sbjct: 143 KLEQSTIVKERGTVYFKEGK--YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200

Query: 76  NRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           N A  +L L  +  A+    +AL+L   N K
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEK 231

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 47  KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
           + +  AI+   +A+      DS N    + R   +L + ++  A  D ++ L+L P N
Sbjct: 210 QAFSAAIESCNKALEL----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 60.8 bits (148), Expect = 2e-13
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 30  AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89
           AAI  K+ GN   K+    +  A   Y +AI      D  N   Y N+A V      +  
Sbjct: 7   AAIAEKDLGNAAYKQKD--FEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAE 60

Query: 90  ALTDTEEALKLCPTNVK 106
            +   E+A+++      
Sbjct: 61  CVQFCEKAVEVGRETRA 77

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 6e-12
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 12  KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS 71
             E E    +A A +    A E + +G EY  K    + +A+  YT  I +      E++
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRA----PEDA 173

Query: 72  VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
             Y+NRA     L ++  A+ D  +A++  P  V+
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A + K +GN++ K  +  + +AI+ Y +A   +     ++     NRA      G Y  A
Sbjct: 5   ADKEKAEGNKFYKARQ--FDEAIEHYNKAWELH-----KDITYLNNRAAAEYEKGEYETA 57

Query: 91  LTDTEEALKLCPTNVK 106
           ++   +A++       
Sbjct: 58  ISTLNDAVEQGREMRA 73

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 15/89 (16%)

Query: 21  DAIAALKESAAIELKE-------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVL 73
           +AI    +  A EL +       +     +KG+  Y  AI     A+ Q      E    
Sbjct: 23  EAIEHYNK--AWELHKDITYLNNRAAAEYEKGE--YETAISTLNDAVEQG----REMRAD 74

Query: 74  YANRAHVNLLLGNYRRALTDTEEALKLCP 102
           Y   +     +GN    L D ++ ++   
Sbjct: 75  YKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 16/92 (17%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +A+ A  E   I+           +     K     + +AI    +AI +    D     
Sbjct: 157 NAVKAYTE--MIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAIEK----DPNFVR 208

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
            Y  +A   + +  Y  AL   + A       
Sbjct: 209 AYIRKATAQIAVKEYASALETLDAARTKDAEV 240

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 17/92 (18%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            AI+ L +  A+E               + + G    Y  +    + I        + S+
Sbjct: 56  TAISTLND--AVEQGREMRADYKVISKSFARIGN--AYHKLGDLKKTIEYY-----QKSL 106

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
                A +   L N  + L   E    + P  
Sbjct: 107 TEHRTADILTKLRNAEKELKKAEAEAYVNPEK 138

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.4 bits (144), Expect = 9e-12
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
           K+  A+ LK+KGN++ +  K  Y DAI  Y  A+        E+ V Y+N +   + +G+
Sbjct: 2   KDKYALALKDKGNQFFRNKK--YDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGD 54

Query: 87  YRRALTDTEEALKLCPTNVK 106
            ++ +  + +AL+L P   K
Sbjct: 55  LKKVVEMSTKALELKPDYSK 74

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 21  DAIAALKESAAIELKEKGNEYVKKG-----KKHYYDAIDCYTRAINQNVLSDSENSVLYA 75
            A   +K+  AIEL  + N Y+        +    +  + + +A+  +    S NS +Y 
Sbjct: 255 GAHEDIKK--AIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD----SNNSSVYY 308

Query: 76  NRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           +R  +N +L NY +A  D ++A +L P N+ 
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 8   ESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD 67
           ++    E +    +    LKE  AI L+  G     K       A +   +AI       
Sbjct: 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND--PLGAHEDIKKAIELF---- 267

Query: 68  SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
                 Y   A +     +        ++ALKL   N  V
Sbjct: 268 -PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A  + +          +++ +A +   +A       D  +       A + L   +   A
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKL----DPRSEQAKIGLAQMKLQQEDIDEA 468

Query: 91  LTDTEEALKLCPTN 104
           +T  EE+  L  T 
Sbjct: 469 ITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +      +  A++L          +G          Y  A   + +A   +     EN  
Sbjct: 288 EYYNYFDK--ALKLDSNNSSVYYHRGQMNFILQN--YDQAGKDFDKAKELD----PENIF 339

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            Y   A +      +    T   EA +  P   +V
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 12  KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS 71
           K +  +            A             K    +  A+  Y  AI       ++  
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND--FDKALKQYDLAIELE----NKLD 406

Query: 72  VLYANRAHV---------NLLLGNYRRALTDTEEALKLCPTNVK 106
            +Y   A +         N  + N+  A    E+A KL P + +
Sbjct: 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            A     +  A EL         +      ++ K  + D    ++ A  +      E   
Sbjct: 322 QAGKDFDK--AKELDPENIFPYIQLACLAYRENK--FDDCETLFSEAKRKF----PEAPE 373

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           +    A +     ++ +AL   + A++L      +
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 21  DAIAALKESAAIELKE-------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVL 73
           DAI       A+ELKE           YV  G       ++  T+A+        + S +
Sbjct: 24  DAIKYYNW--ALELKEDPVFYSNLSACYVSVGD--LKKVVEMSTKALELK----PDYSKV 75

Query: 74  YANRAHVNLLLGNYRRALTD-TEEALKLCPTN 104
              RA  N  LG +  A+ D +  +L     +
Sbjct: 76  LLRRASANEGLGKFADAMFDLSVLSLNGDFND 107

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 21  DAIAALKESAAIE-LKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH 79
              A  K+   +  L E   E ++ G+  Y DA   Y   +                  H
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTEPSVAEYTVRSKERICH 280

Query: 80  VNLLLGNYRRALTDTEEALKLCPTNVK 106
                     A+    E L++ P NV 
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVN 307

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 33  ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92
           +  E G + +  G+    DA+  +  A++     D +N + Y  RA V L +G  + AL 
Sbjct: 5   KHLELGKKLLAAGQ--LADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 58

Query: 93  DTEEALKLCPTNVK 106
           D  + + L      
Sbjct: 59  DLTKVIALKMDFTA 72

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 25  ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84
            +K      L+ +  +        Y  AI    + +         ++ L   RA   +  
Sbjct: 114 LVKADEMQRLRSQALDAFDGAD--YTAAITFLDKILEVC----VWDAELRELRAECFIKE 167

Query: 85  GNYRRALTDTEEALKLCPTNV 105
           G  R+A++D + A KL   N 
Sbjct: 168 GEPRKAISDLKAASKLKSDNT 188

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            AI  L +   +E+          +   ++K+G+     AI     A        S+N+ 
Sbjct: 138 AAITFLDK--ILEVCVWDAELRELRAECFIKEGE--PRKAISDLKAASKLK----SDNTE 189

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            +   + +   LG++  +L++  E LKL   + + 
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 20/99 (20%)

Query: 21  DAIAALKESAAIELKE------------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS 68
           DA +  +    ++ +               + + K  K    +AI   +  +        
Sbjct: 252 DATSKYES--VMKTEPSVAEYTVRSKERICHCFSKDEK--PVEAIRICSEVLQME----P 303

Query: 69  ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           +N     +RA   L+   Y  A+ D E A +    + ++
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 18/106 (16%), Positives = 44/106 (41%), Gaps = 23/106 (21%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAI-----------N 61
            A+  L +   I LK        ++G+  +K+GK    +A D + + +            
Sbjct: 55  AALPDLTK--VIALKMDFTAARLQRGHLLLKQGK--LDEAEDDFKKVLKSNPSEQEEKEA 110

Query: 62  QNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           ++ L  ++      ++A       +Y  A+T  ++ L++C  + ++
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 33  ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92
           +L E   E ++ G+  Y DA   Y   +                  H          A+ 
Sbjct: 259 KLIESAEELIRDGR--YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316

Query: 93  DTEEALKLCPTNVKV 107
              E L++ P NV  
Sbjct: 317 VCSEVLQMEPDNVNA 331

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 33  ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT 92
           +  E G + +  G+    DA+  +  A++     D +N + Y  RA V L +G  + AL 
Sbjct: 28  KHLELGKKLLAAGQ--LADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 81

Query: 93  DTEEALKLCPTNVKV 107
           D  + ++L       
Sbjct: 82  DLTKVIQLKMDFTAA 96

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 18  ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR 77
           A LD I  +    A   + +   ++K+G+     AI     A        ++N+  +   
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLKAASKLK----NDNTEAFYKI 217

Query: 78  AHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           + +   LG++  +L++  E LKL   + + 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRC 247

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 23/106 (21%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAI-----------N 61
            A+  L +   I+LK        ++G+  +K+GK    +A D + + +            
Sbjct: 78  AALPDLTK--VIQLKMDFTAARLQRGHLLLKQGK--LDEAEDDFKKVLKSNPSENEEKEA 133

Query: 62  QNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           Q+ L  S+      ++A      G+Y  A+   ++ L++C  + ++
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 21  DAIAALKESAAIELKEKGNEY----------VKKGKKHYYDAIDCYTRAINQNVLSDSEN 70
           DA +  +    ++ +    EY               +   +AI   +  +      + +N
Sbjct: 275 DATSKYES--VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM----EPDN 328

Query: 71  SVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
                +RA   L+   Y  A+ D E A +    + ++
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 55.4 bits (133), Expect = 2e-10
 Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 15/93 (16%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN------QNVLSDSEN-------SVL 73
           +  AA   K  GN   K+ K    +A+  Y  AI          L            +  
Sbjct: 175 RIGAADRRKMDGNSLFKEEK--LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232

Query: 74  YANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           + N A   + L  Y  A+      L     N K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK 265

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 47  KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           K Y +AI      + +    + +N      R      LG    A  D  +A K  P +  
Sbjct: 244 KRYDEAIGHCNIVLTE----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299

Query: 107 V 107
           +
Sbjct: 300 I 300

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 9e-10
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
           +++ A++LK +GN +       + +AI  Y  AI  +        V Y+N +   +  G+
Sbjct: 21  RQAYAVQLKNRGNHFFTAKN--FNEAIKYYQYAIELD----PNEPVFYSNISACYISTGD 74

Query: 87  YRRALTDTEEALKLCPTNVK 106
             + +  T +AL++ P + K
Sbjct: 75  LEKVIEFTTKALEIKPDHSK 94

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 21  DAIAALKESAAIELKEKGNEYVKKG-----KKHYYDAIDCYTRAINQNVLSDSENSVLYA 75
           DA   L+E  +I L    N Y+        K++  +    + +A++ N     E    Y 
Sbjct: 261 DAQVLLQE--SINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN----PEYPPTYY 314

Query: 76  NRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           +R  +  +L +Y+ A  D ++A  L P NV 
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 14  ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVL 73
            S  +       L+E+AA+ L   G  +  K      DA      +IN +          
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNN--LLDAQVLLQESINLH-----PTPNS 278

Query: 74  YANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           Y   A       N +      ++A+ L P     
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 22  AIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81
                K +       +    + + K  +  AI   T+A       D  +       A + 
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEK--FNAAIKLLTKACEL----DPRSEQAKIGLAQLK 472

Query: 82  LLLGNYRRALTDTEEALKLCPTN 104
           L +     A+   E++  L  T 
Sbjct: 473 LQMEKIDEAIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +     ++  A++L          +G  Y       Y +A + + +A + N     EN  
Sbjct: 294 EFFKFFQK--AVDLNPEYPPTYYHRGQMYFILQD--YKNAKEDFQKAQSLN----PENVY 345

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            Y   A +    G +  +     E     PT  +V
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +A    ++  A  L                K+GK  + ++   +     +          
Sbjct: 328 NAKEDFQK--AQSLNPENVYPYIQLACLLYKQGK--FTESEAFFNETKLKF----PTLPE 379

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           +    A +    G++  A+   + A +L     K+
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 12/106 (11%), Positives = 28/106 (26%), Gaps = 24/106 (22%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQN--------- 63
           ++ A   E                       +G   +  AI  Y  A             
Sbjct: 362 ESEAFFNE--TKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVG 417

Query: 64  ---VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
              ++  +      +++    L    +  A+    +A +L P + +
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENS-------VLYA 75
           K   A  +KEKG  Y K GK  Y  A+  Y + ++       LS+ E+          + 
Sbjct: 264 KLEQAAIVKEKGTVYFKGGK--YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 76  NRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           N A   L L  Y +A+   ++AL L   N K
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEK 352

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 47  KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
           + Y  A++C  +A+      DS N      R    LL+  +  A  D E+ L++ P N
Sbjct: 331 REYTKAVECCDKALG----LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 17/116 (14%)

Query: 6   DAESEPKTESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYYDAIDCYTRAI-- 60
              S         D D      +     + +LK  GN + K     +  AI  YT+ +  
Sbjct: 195 KDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQN--WEMAIKKYTKVLRY 252

Query: 61  ---NQNVLSDSENS-------VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
              ++    D++ +           N     L + +++ A+    EAL++ P+N K
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 15/98 (15%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAI---NQNVLSDSE 69
            A   L+  ++  L         E G     K       AI+ +  A+    +   ++  
Sbjct: 459 LANEYLQ--SSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKP 514

Query: 70  NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            +  +AN  H    L  Y  A+    + L L   +  V
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +A     +  +  +  +         + +  +G+  +  AI  YT A            +
Sbjct: 391 EARRYFSK--SSTMDPQFGPAWIGFAHSFAIEGE--HDQAISAYTTAAR----LFQGTHL 442

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            Y      ++ LGN   A    + +  L   +  +
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 13  TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH----YYDAIDCYTRAINQNVLSDS 68
           T  E+ DL         +  +     + Y+ K  K          + Y  +IN       
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----E 302

Query: 69  ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           ++S L   +A    +   +   L  T + L++ P N+ V
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 37  KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96
            G+ Y K     Y  AID   + +  +    + ++ ++   A V L       A+T   E
Sbjct: 522 LGHAYRKLKM--YDAAIDALNQGLLLS----TNDANVHTAIALVYLHKKIPGLAITHLHE 575

Query: 97  ALKLCPTNV 105
           +L + P  +
Sbjct: 576 SLAISPNEI 584

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 8e-07
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           ++I   ++  AI+L          KG       +  Y +A+DCY   IN     D  N  
Sbjct: 24  ESIDLFEK--AIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVI--EDEYNKD 77

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
           ++A +A     +          E   KL   +
Sbjct: 78  VWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 35.9 bits (84), Expect = 6e-04
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 37  KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96
           +G      G   Y ++ID + +AI  +     E S  +  +      L  Y  A+     
Sbjct: 12  EGVLQYDAGN--YTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNY 65

Query: 97  ALKLCP 102
            + +  
Sbjct: 66  VINVIE 71

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 17/100 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAIN-----QNVLSD 67
            A     +  A+ +         E G    + G+  +  A   +  A+       N ++ 
Sbjct: 177 LAERFFSQ--ALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFLDALEKIKAIGNEVTV 232

Query: 68  SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            +   L  N  HV   L  Y  AL    +AL L P N   
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            A   L +  A  L++         G+ +  + +  +  A+  Y  A            +
Sbjct: 109 HARRYLSK--ATTLEKTYGPAWIAYGHSFAVESE--HDQAMAAYFTAAQLM----KGCHL 160

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
                     L  N + A     +AL + P +  V
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 16  EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYA 75
           EK          +     L   G+   K  K  Y +A+D + +A+        +N+  Y+
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK--YAEALDYHRQALVLI----PQNASTYS 274

Query: 76  NRAHVNLLLGNYRRALTDTEEALKLCPTNV 105
              +++ L+GN+  A+     AL L   + 
Sbjct: 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDT 304

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 16/105 (15%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L                          +    +A         +  V
Sbjct: 396 RLLPVLCQ--AHGLTPEQVVAIASHDGGKQALET--VQRLLPVLCQAHGLT----PQQVV 447

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN 117
             A+       L +    L+  + AL     +  V + C G  P 
Sbjct: 448 AIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPA 492

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 13/93 (13%), Positives = 21/93 (22%), Gaps = 16/93 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L                          +    +A         +  V
Sbjct: 260 RLLPVLCQ--AHGLTPQQVVAIASNSGGKQALET--VQRLLPVLCQAHGLT----PQQVV 311

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105
             A+       L   +R L    +A  L P  V
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 344

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 16/93 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L           G              +    +A         +  V
Sbjct: 226 RLLPVLCQ--AHGLTPQQVVAIASNGGGKQALET--VQRLLPVLCQAHG----LTPQQVV 277

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105
             A+ +     L   +R L    +A  L P  V
Sbjct: 278 AIASNSGGKQALETVQRLLPVLCQAHGLTPQQV 310

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 14/93 (15%), Positives = 21/93 (22%), Gaps = 16/93 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L                          +    +A         E  V
Sbjct: 328 RLLPVLCQ--AHGLTPQQVVAIASHDGGKQALET--VQRLLPVLCQAHGLT----PEQVV 379

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105
             A+       L   +R L    +A  L P  V
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQV 412

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 6/90 (6%)

Query: 16  EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYA 75
             A   A   L     + +                  +    +A         +  V  A
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHDGGKQALET--VQRLLPVLCQAHGLT----PQQVVAIA 110

Query: 76  NRAHVNLLLGNYRRALTDTEEALKLCPTNV 105
           +       L   +R L    +A  L P  V
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQV 140

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 6/88 (6%)

Query: 18  ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR 77
             L     L     + +                  +    +A         E  V  A+ 
Sbjct: 93  PVLCQAHGLTPQQVVAIASHDGGKQALET--VQRLLPVLCQAHGLT----PEQVVAIASH 146

Query: 78  AHVNLLLGNYRRALTDTEEALKLCPTNV 105
                 L   +  L    +A  L P  V
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQV 174

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 6/88 (6%)

Query: 18  ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR 77
             L     L     + +   G              +    +A         +  V  A+ 
Sbjct: 161 PVLCQAHGLTPEQVVAIASNGGGKQALET--VQRLLPVLCQAHG----LTPQQVVAIASN 214

Query: 78  AHVNLLLGNYRRALTDTEEALKLCPTNV 105
                 L   +R L    +A  L P  V
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQV 242

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 38  GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97
           G      G   Y  A+  Y+         D        + A  +L LG+   A +    A
Sbjct: 59  GACRQSLGL--YEQALQSYSYGAL----MDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112

Query: 98  LKLCPTN 104
             L    
Sbjct: 113 RALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 6/93 (6%)

Query: 15  SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLY 74
           S+   L  +  L E    +L   G    + GK  + DA   +          D  ++  +
Sbjct: 2   SDGGTLAMLRGLSEDTLEQLYALGFNQYQAGK--WDDAQKIFQALCML----DHYDARYF 55

Query: 75  ANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
                    LG Y +AL        +     + 
Sbjct: 56  LGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 37  KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE 96
            G  Y         +A   +TR+IN+    D   +V Y  R  +      Y  A+ D +E
Sbjct: 43  IGCMYTILKN--MTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96

Query: 97  ALKLCPTN 104
           AL     N
Sbjct: 97  ALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           AI L  +G     K    +  A+D ++   + +       S +  N   +  +L N   A
Sbjct: 6   AISLWNEGVLAADKKD--WKGALDAFSAVQDPH-------SRICFNIGCMYTILKNMTEA 56

Query: 91  LTDTEEALKLCPTNV 105
                 ++       
Sbjct: 57  EKAFTRSINRDKHLA 71

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 22/101 (21%)

Query: 29  SAAIELKEK--------GNEYVKKGKKHYYDAIDCYTRAINQN------------VLSDS 68
           + +I   +         G  Y +  K  Y  AI     A+ Q             +    
Sbjct: 61  TRSINRDKHLAVAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 118

Query: 69  ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI 109
               +  N A +      +++A      A  +        I
Sbjct: 119 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 159

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +A        A+ L            N   ++G     +A+  Y +A+        E + 
Sbjct: 289 EAEDCYNT--ALRLCPTHADSLNNLANIKREQGN--IEEAVRLYRKALEVF----PEFAA 340

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
            ++N A V    G  + AL   +EA+++ PT 
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            +        AI+            GN Y ++G+    +AI+ Y  A+        +   
Sbjct: 51  RSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQ--LQEAIEHYRHALRLK----PDFID 102

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            Y N A   +  G+   A+     AL+  P    V
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            A+AA     A+ L              Y ++G      AID Y RAI            
Sbjct: 221 RAVAAYLR--ALSLSPNHAVVHGNLACVYYEQGL--IDLAIDTYRRAIELQ----PHFPD 272

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
            Y N A+     G+   A      AL+LCPT+
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +AI   +   A+ LK              V  G      A+  Y  A+  N     +   
Sbjct: 85  EAIEHYRH--ALRLKPDFIDGYINLAAALVAAGD--MEGAVQAYVSALQYN----PDLYC 136

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           + ++  ++   LG    A     +A++  P    
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 39.4 bits (93), Expect = 8e-05
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            AI   ++  A+ L           GN   +     +  A+  Y RA++ +      ++V
Sbjct: 187 LAIHHFEK--AVTLDPNFLDAYINLGNVLKEARI--FDRAVAAYLRALSLS----PNHAV 238

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           ++ N A V    G    A+     A++L P    
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           +A A   +  AIE +          G  +  +G+   + AI  + +A+  +         
Sbjct: 153 EAKACYLK--AIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFEKAVTLD----PNFLD 204

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
            Y N  +V      + RA+     AL L P +  V
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 36  EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95
           E  +   + G   +  A     +   Q      +N+ +    + ++       R+   + 
Sbjct: 4   ELAHREYQAGD--FEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFST 57

Query: 96  EALKLCPTNV 105
            A+K  P   
Sbjct: 58  LAIKQNPLLA 67

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
           DA+   ++   ++L+          GN Y    ++     ++   + ++    S ++   
Sbjct: 106 DALRMYEK--ILQLEADNLAANIFLGNYYYLTAEQ-EKKKLETDYKKLS----SPTKMQY 158

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
                    L    Y +A    ++ +   P+ 
Sbjct: 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 22  AIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81
            +    E ++    E    Y K     Y  A   Y   + +       N       A + 
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRN--YDKAYLFYKELLQKA----PNNVDCLEACAEMQ 98

Query: 82  LLLGNYRRALTDTEEALKLCPTNVKV 107
           +  G  + AL   E+ L+L   N+  
Sbjct: 99  VCRGQEKDALRMYEKILQLEADNLAA 124

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            AI   +   A++          + G+ +  KG   +  AI    + I       + +  
Sbjct: 92  LAIQQYQA--AVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEKQIRPT----TTDPK 143

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           ++            Y +A +   + L+L P    
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 21  DAIAALKE-SAAIELKEK--------GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS 71
            A   ++   + +   +         G   +KKG+     AI  Y  A++++    +   
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ--DSLAIQQYQAAVDRD----TTRL 108

Query: 72  VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
            +Y          GN+  A+   E+ ++   T+ K
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 32  IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL 91
           ++  +   E + +G     +A+      +    +   E    Y    +    LG++++AL
Sbjct: 1   MDQLKTIKELINQGD--IENALQALEEFLQTEPVGKDE---AYYLMGNAYRKLGDWQKAL 55

Query: 92  TDTEEALKLCPTN 104
            + + A++L P +
Sbjct: 56  NNYQSAIELNPDS 68

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            A+A   +  A+EL           GN YV K    Y +A D + +A+        EN  
Sbjct: 75  RALAFYDK--ALELDSSAATAYYGAGNVYVVKEM--YKEAKDMFEKALRAG----MENGD 126

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK 106
           L+     V + L   + AL   + A++L   + +
Sbjct: 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 16/90 (17%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            A+  L+   A+EL E         G     +G     +A+  +     Q+      ++ 
Sbjct: 143 LALPYLQR--AVELNENDTEARFQFGMCLANEGM--LDEALSQFAAVTEQD----PGHAD 194

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCP 102
            + N         N  +AL   ++A+ + P
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAIDIQP 224

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV 72
            A  A  +  AIE             N      +     A+  Y +A+  +    S  + 
Sbjct: 41  KAAEAFTK--AIEENKEDAIPYINFANLLSSVNE--LERALAFYDKALELD----SSAAT 92

Query: 73  LYANRAHVNLLLGNYRRALTDTEEALKLCPTNV 105
            Y    +V ++   Y+ A    E+AL+    N 
Sbjct: 93  AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 25  ALKESAAIELKEKGNEYVKKGK--KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
            L    +      G + + +G     Y  A + +T+AI +N     E+++ Y N A++  
Sbjct: 13  GLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----KEDAIPYINFANLLS 68

Query: 83  LLGNYRRALTDTEEALKLCP 102
            +    RAL   ++AL+L  
Sbjct: 69  SVNELERALAFYDKALELDS 88

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 48  HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
                +    + +    L+D E + L   R  +   LG    A  D  +AL + P   +V
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 4/59 (6%)

Query: 46  KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
           K+ +  A D Y  A          +     +     L L    +A    E  ++     
Sbjct: 83  KEQFQQAADLYAVAFA----LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 2   ALWMDAESEPKTESEKADLDAIAALKESAAI------ELKEKGNEYVKKGKKHYYDAIDC 55
                 E+E  + +    +++ A LK+  AI      ++     ++  KG+    +A   
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGR--IEEAEVF 58

Query: 56  YTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           +          D  N       A +  +   +++A      A  L   +   
Sbjct: 59  FRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
            E++ +EL  +G    K G       +  +  A+          S +Y+   +    L +
Sbjct: 5   MEASCLELALEGERLCKSGD--CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD 62

Query: 87  YRRALTDTEEALKLC 101
           Y +AL      L L 
Sbjct: 63  YAKALEYHHHDLTLA 77

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 12  KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS 71
           + +  + +L  +    E A +         +  G +   DA   +    ++     S   
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----SPTL 200

Query: 72  VLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           +L   +A  ++  G +  A    +EAL     + + 
Sbjct: 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 6/88 (6%)

Query: 18  ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR 77
             L     L +   + +                  +    +A            V  A+ 
Sbjct: 586 PVLCQAHGLTQVQVVAIASNIGGKQALET--VQRLLPVLCQAHGLT----PAQVVAIASH 639

Query: 78  AHVNLLLGNYRRALTDTEEALKLCPTNV 105
                 L   +R L    +A  L P  V
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQV 667

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 14/88 (15%), Positives = 21/88 (23%), Gaps = 6/88 (6%)

Query: 18  ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR 77
             L     L     + +   G              +    +A         E  V  A+ 
Sbjct: 654 PVLCQAHGLTPDQVVAIASNGGGKQALET--VQRLLPVLCQAHGLT----QEQVVAIASN 707

Query: 78  AHVNLLLGNYRRALTDTEEALKLCPTNV 105
                 L   +R L    +A  L P  V
Sbjct: 708 NGGKQALETVQRLLPVLCQAHGLTPDQV 735

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 29  SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
           ++ +EL  +G    K G       +  +  A+          S +Y+   +    L +Y 
Sbjct: 3   ASCLELALEGERLCKSGD--CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60

Query: 89  RALTDTEEALKLC 101
           +AL      L L 
Sbjct: 61  KALEYHHHDLTLA 73

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 12/94 (12%)

Query: 20  LDAIAALKESAAIE------LKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVL 73
                 +     I       L        + G   Y DA   +          D  +S  
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX--YEDAHXVFQALCVL----DHYDSRF 57

Query: 74  YANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
           +         +G Y  A+        +     + 
Sbjct: 58  FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 11  PKTESEKADLDAIAALKESAAIELK--------EKGNEYVK------KGKKHYYDAIDCY 56
              E  +  +D++   K   A+++           GN Y+       +  K    A+  Y
Sbjct: 187 SGDEHSRHVMDSVRQAKL--AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAY 244

Query: 57  TRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP 102
            +A   +  + S N  L+ NRA ++    +Y  AL    +A  L P
Sbjct: 245 AQAEKVDRKA-SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 14  ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVL 73
           + +       +  +  +     E+G   +K G      A  C+ +A+ +      +N   
Sbjct: 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEF 174

Query: 74  YANRAHVNLLLGNYRR---ALTDTEEALKLCPTN 104
            +  A  +  L N+     A+    +A++L P N
Sbjct: 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
             S  +EL  +G      G       +  +  AI          S +Y+   +    LG+
Sbjct: 44  GSSMCLELALEGERLCNAGD--CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD 101

Query: 87  YRRALTDTEEALKLC 101
           Y +A+   +  L L 
Sbjct: 102 YNKAMQYHKHDLTLA 116

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 35.5 bits (82), Expect = 9e-04
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 48  HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN 104
               A+  Y +AI    L   + +  Y         LG YR+A       +K  P +
Sbjct: 5   LEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.67
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.64
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.58
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.58
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.57
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.57
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.54
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.52
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.5
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.48
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.47
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.46
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.46
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.46
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.45
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.43
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.43
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.42
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.41
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.38
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.38
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.38
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.36
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.36
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.36
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.34
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.34
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.33
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.33
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.32
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.32
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.32
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.31
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.31
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.3
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.29
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.29
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.26
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.24
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.22
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.21
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.2
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.18
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.17
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.15
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.13
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.12
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.1
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.09
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.03
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.99
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.95
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.93
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.91
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.9
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.89
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.84
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.84
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.83
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.83
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.83
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.8
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.79
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.77
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.74
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.74
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.63
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.63
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.56
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.5
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.49
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.49
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.47
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.45
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.45
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.38
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.38
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.38
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.34
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.34
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.28
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.27
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.94
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.86
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.67
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.61
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.52
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.34
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.07
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.87
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.86
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.8
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.45
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.31
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.15
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.13
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.86
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.57
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.14
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.88
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.38
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.33
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.24
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.9
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.37
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	90.92
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.67
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.57
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	90.38
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	89.91
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	89.14
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	88.87
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.56
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	88.24
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.65
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	85.9
3myv_A	454	SUSD superfamily protein; RAGB, SUSD and hypotheti	85.73
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	85.71
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	85.41
3mcx_A	477	SUSD superfamily protein; structural genomics, joi	84.8
3kez_A	461	Putative sugar binding protein; structural genomic	84.72
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	84.34
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	84.22
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	83.76
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.67
3lew_A	495	SUSD-like carbohydrate binding protein; structural	83.33
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	82.55
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	81.49
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.37
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	80.59
3qnk_A	517	Putative lipoprotein; alpha-alpha superhelix, stru	80.07

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=1.7e-20  Score=115.72  Aligned_cols=89  Identities=36%  Similarity=0.508  Sum_probs=72.1

Q ss_pred             HHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417           23 IAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP  102 (119)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +..++|+.++.+.++|+.+++.|  +|++|+..|+++|++    +|.++.+|+++|.|+..+|++++|+.+|+++++++|
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   78 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKG--DYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS   78 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence            34578888888888888888888  788888888888888    888888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHhcccC
Q 033417          103 TNVKVVILCSGSHPN  117 (119)
Q Consensus       103 ~~~~a~~~~a~~~~~  117 (119)
                      +++.+|+.+|.++..
T Consensus        79 ~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           79 KFIKGYIRKAACLVA   93 (126)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            888888888887653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.80  E-value=1.3e-18  Score=107.30  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=93.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -++++..++++..++|.++..+..+|.+++..|  ++++|+..|+++|++    +|.++.+|+++|.++..+|++++|+.
T Consensus        29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~  102 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLM--EFQRALDDCDTCIRL----DSKFIKGYIRKAACLVAMREWSKAQR  102 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc--cHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCCCHHHHHH
Confidence            357888999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +|+++++++|++..++..++.++
T Consensus       103 ~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          103 AYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.77  E-value=9.2e-19  Score=111.46  Aligned_cols=91  Identities=13%  Similarity=0.079  Sum_probs=83.9

Q ss_pred             HHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           21 DAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .++..++|+++..++..|..+++.|  +|++|+..|++++.+    +|.++.+|+++|.++..+|++++|+..|++++++
T Consensus        26 ~~al~l~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           26 KDINAIPDDMMDDIYSYAYDFYNKG--RIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            3444568999999999999999999  899999999999999    9999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHhcccC
Q 033417          101 CPTNVKVVILCSGSHPN  117 (119)
Q Consensus       101 ~p~~~~a~~~~a~~~~~  117 (119)
                      +|+++.+|+.+|.+|..
T Consensus       100 ~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             SSSCCHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            99999999999998854

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=3.4e-18  Score=108.01  Aligned_cols=98  Identities=15%  Similarity=0.039  Sum_probs=89.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+......+|+.+..++..|.++++.|  +|++|+..|+++|++    +|+++.+|.++|.++..+|++++|+.
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--EYDLAKKYICTYINV----QERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCchHHHHH
Confidence            356677778888889999999999999999998  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .|+++++++|+++.+++.+|.+|.
T Consensus        87 ~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           87 CYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999998875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=1e-16  Score=105.77  Aligned_cols=98  Identities=17%  Similarity=0.108  Sum_probs=93.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHH----------------HhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKE----------------KGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN   76 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   76 (119)
                      .++++..+.++..++|+++..+..                +|.+++..|  ++++|+..|++++++    +|+++.++++
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~   93 (208)
T 3urz_A           20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--NYDKAYLFYKELLQK----APNNVDCLEA   93 (208)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----CCCCHHHHHH
Confidence            457888999999999999999999                999999999  999999999999999    9999999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           77 RAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +|.++..+|++++|+..|+++++++|+++.+++.+|.+|+
T Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998874

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=3.2e-17  Score=100.91  Aligned_cols=84  Identities=24%  Similarity=0.282  Sum_probs=76.4

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV-  105 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~-  105 (119)
                      .++.+.++.++|+.+++.|  +|++|+..|+++|++    +|+++.+|.++|.|++.+|+|++|+.+|+++++++|++. 
T Consensus         4 ~~d~A~a~~~lG~~~~~~~--~~~~A~~~y~~Al~~----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQK--DFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            3567889999999999999  999999999999999    999999999999999999999999999999999998764 


Q ss_pred             ------HHHHHHHhccc
Q 033417          106 ------KVVILCSGSHP  116 (119)
Q Consensus       106 ------~a~~~~a~~~~  116 (119)
                            .+|+++|.++.
T Consensus        78 ~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence                  57777777664

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=7.2e-17  Score=101.80  Aligned_cols=93  Identities=11%  Similarity=0.101  Sum_probs=84.6

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+.++..++|+++..+...|..++..|  +|++|+..|++++.+    +|.++.+++++|.++..+|++++|+..|++++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSG--XYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567777889999999999999999998  899999999999999    99999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHhcccC
Q 033417           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+++.+++.+|.+|..
T Consensus        83 ~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           83 VMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHSTTCTHHHHHHHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHH
Confidence            9999999999999988753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1e-16  Score=97.56  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+.++..++|+++..+...|.+++..|  +|++|+..|++++.+    +|.++.+++++|.++..+|++++|+..
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~   94 (126)
T 3upv_A           21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALET   94 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence            35556666666666666666666666666666  666666666666666    666666666666666666666666666


Q ss_pred             HHHHHHhC------CCcHHHHHHHHhcc
Q 033417           94 TEEALKLC------PTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~------p~~~~a~~~~a~~~  115 (119)
                      ++++++++      |.+..++..++.+.
T Consensus        95 ~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           95 LDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            66666666      66666666665554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.69  E-value=1.6e-16  Score=100.31  Aligned_cols=98  Identities=17%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++.+.+.++..++|+++.++...|.++...|  ++++|+..|++++++    +|+++.+++++|.++..+|++.+|+.
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEE--NTDKAVECYRRSVEL----NPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--chHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            457889999999999999999999999999999  899999999999999    99999999999999999999998887


Q ss_pred             H-HHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 D-TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~-~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      . ++++++++|+++.++..++.++.
T Consensus       121 ~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          121 YWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            6 58999999999999998887764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=1.2e-16  Score=99.48  Aligned_cols=93  Identities=16%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+.++..++|++...+...|..++..|  +|++|+..|++++..    +|.++.+++++|.++..+|++++|+..|++++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAG--KWDDAQKIFQALCML----DHYDARYFLGLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            455556678888888888888888888  888888888888888    88888888888888888888888888888888


Q ss_pred             HhCCCcHHHHHHHHhcccC
Q 033417           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+++.+++.+|.++..
T Consensus        80 ~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           80 LMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHCTTCTHHHHHHHHHHHH
T ss_pred             hcCCCCcHHHHHHHHHHHH
Confidence            8888888888888887643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=4.1e-16  Score=99.12  Aligned_cols=87  Identities=13%  Similarity=0.033  Sum_probs=83.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++..++|.++..|..+|.+++..|  +|++|+..|++++.+    +|+++.+++++|.|+..+|++++|+.
T Consensus        52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~Ai~~~~~al~l----~P~~~~~~~~lg~~~~~lg~~~eA~~  125 (151)
T 3gyz_A           52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE--QFQQAADLYAVAFAL----GKNDYTPVFHTGQCQLRLKAPLKAKE  125 (151)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            457888999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcH
Q 033417           93 DTEEALKLCPTNV  105 (119)
Q Consensus        93 ~~~~al~l~p~~~  105 (119)
                      .|++++++.|+.+
T Consensus       126 ~~~~al~l~~~~~  138 (151)
T 3gyz_A          126 CFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHCCCHH
T ss_pred             HHHHHHHhCCCHH
Confidence            9999999999876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.67  E-value=3.9e-16  Score=100.05  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE------------NSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+..+.+.|+.++..|  +|++|+..|+++|++    +|+            ++.+|.|+|.|+..+|+|++|+.+|+++
T Consensus        10 ~a~~~~~~G~~l~~~g--~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAG--EYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5888999999999999  999999999999999    555            3449999999999999999999999999


Q ss_pred             HHh-------CCCcHHHH----HHHHhccc
Q 033417           98 LKL-------CPTNVKVV----ILCSGSHP  116 (119)
Q Consensus        98 l~l-------~p~~~~a~----~~~a~~~~  116 (119)
                      |++       +|++.++|    +++|.++.
T Consensus        84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~  113 (159)
T 2hr2_A           84 LHYFNRRGELNQDEGKLWISAVYSRALALD  113 (159)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccccCCCchHHHHHHHHHhHHHHHH
Confidence            999       99999999    99999874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.65  E-value=5.7e-16  Score=98.13  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=42.7

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      +|..+..+.++|.++++.|  +|++|+..++++|.+    +|.++.+|+++|.++..+|++++|+.++++++.++|+++
T Consensus        59 ~~~~~~~~~nla~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIG--DLHEAEETSSEVLKR----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            5555555555555555555  555555555555555    555555555555555555555555555555555555555

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.6e-15  Score=92.13  Aligned_cols=84  Identities=26%  Similarity=0.365  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      |..+..+...|..++..|  +|++|+..|++++.+    +|.++.++.++|.++..+|++++|+.+++++++++|+++.+
T Consensus         1 p~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~   74 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA   74 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence            456889999999999999  999999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccC
Q 033417          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      ++.+|.++..
T Consensus        75 ~~~lg~~~~~   84 (126)
T 3upv_A           75 YIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.64  E-value=1.7e-15  Score=96.12  Aligned_cols=95  Identities=12%  Similarity=0.072  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..+.++..++|.++..+..+|.+++..|  +|++|+..|++++.+    +|.++.+++++|.++..+|++++|+..
T Consensus        28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~  101 (164)
T 3sz7_A           28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASG--QHEKAAEDAELATVV----DPKYSKAWSRLGLARFDMADYKGAKEA  101 (164)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            45666777777777777777777777777777  677777777777777    777777777777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhc
Q 033417           94 TEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~  114 (119)
                      |+++++++|++..+++.++.+
T Consensus       102 ~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A          102 YEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHH
Confidence            777777777777766666544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.64  E-value=1.3e-15  Score=96.68  Aligned_cols=85  Identities=26%  Similarity=0.284  Sum_probs=80.8

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ++..+..+...|..++..|  +|++|+..|++++.+    +|.++.+++++|.+++.+|++++|+.+|+++++++|+++.
T Consensus         7 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARK--EYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            4567899999999999999  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 033417          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      +|+.+|.+|..
T Consensus        81 ~~~~lg~~~~~   91 (164)
T 3sz7_A           81 AWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998854

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.64  E-value=1.8e-15  Score=96.82  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=84.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhH----------HHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHY----------YDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      .+++.+.++.+..++|++++.|.+.|.++...+  ++          ++|+..|+++|++    +|+.+.+|+++|.+|.
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~--~~~~g~~al~~~~eAi~~le~AL~l----dP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELS--QFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc--ccchhhhhHhHHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHH
Confidence            346777888999999999999999999999887  54          5999999999999    9999999999999999


Q ss_pred             Hhc-----------CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417           83 LLG-----------NYRRALTDTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        83 ~l~-----------~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      .+|           ++++|+.+|++|++++|++......+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            885           899999999999999999976665543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=3.5e-15  Score=99.02  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++..++|+++..+...|..+...|  ++++|+..|++++++    + +++.+++++|.++..+|++++|+.
T Consensus       100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~-~~~~~~~~la~~~~~~g~~~~A~~  172 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLG--ERDKAEASLKQALAL----E-DTPEIRSALAELYLSMGRLDEALA  172 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----c-cchHHHHHHHHHHHHcCCHHHHHH
Confidence            456788899999999999999999999999999  899999999999999    8 899999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .|+++++++|+++.+++.+|.++..
T Consensus       173 ~~~~al~~~P~~~~~~~~la~~~~~  197 (217)
T 2pl2_A          173 QYAKALEQAPKDLDLRVRYASALLL  197 (217)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.64  E-value=1.2e-15  Score=117.34  Aligned_cols=96  Identities=15%  Similarity=0.099  Sum_probs=53.8

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++..++|+++.++.++|.++.+.|  ++++|+..|+++|++    +|+++.+|+++|.++..+|++++|+..
T Consensus        26 ~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--~~~eA~~~~~~Al~l----~P~~~~a~~nLg~~l~~~g~~~~A~~~   99 (723)
T 4gyw_A           26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--KLQEALMHYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGALQC   99 (723)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34555555555555555555555555555555  555555555555555    555555555555555555555555555


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |+++++++|++..+|+++|.+|
T Consensus       100 ~~kAl~l~P~~~~a~~~Lg~~~  121 (723)
T 4gyw_A          100 YTRAIQINPAFADAHSNLASIH  121 (723)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Confidence            5555555555555555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=1.3e-15  Score=101.16  Aligned_cols=98  Identities=11%  Similarity=0.032  Sum_probs=74.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh--------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL--------   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l--------   84 (119)
                      .+++...++++..++|+++.++...|..+...|  ++++|+..|++++++    +|+++.++.++|.++..+        
T Consensus        21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~   94 (217)
T 2pl2_A           21 YDAALTLFERALKENPQDPEALYWLARTQLKLG--LVNPALENGKTLVAR----TPRYLGGYMVLSEAYVALYRQAEDRE   94 (217)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence            345666777777777777777777777777777  777777777777777    777777777777777777        


Q ss_pred             ---cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           85 ---GNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        85 ---~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                         |++++|+..++++++++|+++.+++.+|.++.
T Consensus        95 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~  129 (217)
T 2pl2_A           95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA  129 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence               77777777777777777777777777777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.62  E-value=1.1e-14  Score=92.14  Aligned_cols=51  Identities=29%  Similarity=0.315  Sum_probs=48.7

Q ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|..+.+|+++|.|++.+|+|++|+.+|+++++++|+++.+|+++|.+|..
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  109 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIA  109 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999998854

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=2.5e-15  Score=115.65  Aligned_cols=99  Identities=20%  Similarity=0.173  Sum_probs=94.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++..++|+++.++.++|+++...|  ++++|+..|++++++    +|+++.+|+++|.++..+|++++|+.
T Consensus        59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g--~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~~~eAi~  132 (723)
T 4gyw_A           59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ--DVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIA  132 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            467889999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .|+++++++|+++.+++.+|.++..
T Consensus       133 ~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A          133 SYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHhhhhhHHHh
Confidence            9999999999999999999988753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=2.1e-15  Score=108.46  Aligned_cols=98  Identities=10%  Similarity=-0.016  Sum_probs=78.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHh-HHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH-YYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .++++..++++..++|++..+|..+|.++...|  + +++|+..|+++|.+    +|.++.+|+++|.++..+|++++|+
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l----~P~~~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEE----QPKNYQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHccCHHHHH
Confidence            567777888888888888888888888888877  5 88888888888888    7778888888888888888888888


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+|+++|+++|++..+|+.+|.++.
T Consensus       187 ~~~~kal~ldP~~~~a~~~lg~~~~  211 (382)
T 2h6f_A          187 EFIADILNQDAKNYHAWQHRQWVIQ  211 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCHHHHHHHHHHHH
Confidence            8888888888888777777777653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=5.9e-15  Score=87.11  Aligned_cols=81  Identities=28%  Similarity=0.459  Sum_probs=76.7

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN-----  104 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-----  104 (119)
                      .+..+...|..++..|  +|++|+..|++++.+    +|.++.++.++|.++..+|++++|+..++++++++|++     
T Consensus         3 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQG--LYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            4678999999999999  999999999999999    99999999999999999999999999999999999999     


Q ss_pred             -HHHHHHHHhccc
Q 033417          105 -VKVVILCSGSHP  116 (119)
Q Consensus       105 -~~a~~~~a~~~~  116 (119)
                       ..+++.+|.++.
T Consensus        77 ~~~~~~~~~~~~~   89 (111)
T 2l6j_A           77 RSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence             999999988764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=9.2e-16  Score=110.38  Aligned_cols=99  Identities=15%  Similarity=0.007  Sum_probs=93.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++..++|++..+|.++|.++...|  ++++|+..|+++|.+    +|.++.+|+++|.++..+|++++|+.
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g--~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~  221 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR--DPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQ  221 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHH
Confidence            467889999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+++|+++|++..+|+.+|.++..
T Consensus       222 ~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          222 YVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.61  E-value=1.2e-14  Score=87.70  Aligned_cols=91  Identities=14%  Similarity=0.099  Sum_probs=85.0

Q ss_pred             ChhhHHHHHHHHHh---cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417           13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .++++..+.++..+   +|+.+..+..+|.+++..|  +|++|+..|++++++    +|+++.+++++|.++..+|++++
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG--EYRKAEAVLANGVKQ----FPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHcCCHHH
Confidence            45688899999999   7999999999999999999  899999999999999    99999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHH
Q 033417           90 ALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~  109 (119)
                      |+..+++++.+.|+++....
T Consensus        80 A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHH
Confidence            99999999999999877653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.61  E-value=5.1e-15  Score=93.22  Aligned_cols=89  Identities=18%  Similarity=0.105  Sum_probs=83.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++..++|.++..+...|.++...|  +|++|+..|++++.+    +|+++.+++++|.++..+|++++|+.
T Consensus        37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--QYDLAIHSYSYGAVM----DIXEPRFPFHAAECLLQXGELAEAES  110 (148)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            457788899999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHH
Q 033417           93 DTEEALKLCPTNVKV  107 (119)
Q Consensus        93 ~~~~al~l~p~~~~a  107 (119)
                      .|+++++++|+++..
T Consensus       111 ~~~~al~~~p~~~~~  125 (148)
T 2vgx_A          111 GLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHCcCCCcc
Confidence            999999999987654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.60  E-value=4.5e-15  Score=92.35  Aligned_cols=93  Identities=18%  Similarity=0.139  Sum_probs=85.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|.++..+...|.++...|  +|++|+..|++++.+    +|.++.+++++|.++..+|++++|+.
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--LYEQALQSYSYGALM----DINEPRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            456788899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHH
Q 033417           93 DTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~  111 (119)
                      .++++++++|+++.....+
T Consensus       108 ~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A          108 GFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             HHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhCCCCcchHHHH
Confidence            9999999999876554433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=3.5e-15  Score=95.68  Aligned_cols=93  Identities=17%  Similarity=0.058  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+...+.++..++|.+...+...|.+++..|  ++++|+..|++++++    +|.++.++.++|.++..+|++++|+..
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMG--EHDKAIEAYEKTISI----KPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhC--CchhHHHHHHHHHHh----cchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            34556677777777888888888888888877  788888888888888    788888888888888888888888888


Q ss_pred             HHHHHHhCCCcHHHHHHHHhc
Q 033417           94 TEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~  114 (119)
                      |+++++++|+++  .+.+|.+
T Consensus       164 ~~~al~~~p~~a--~~~lali  182 (184)
T 3vtx_A          164 FKKALEKEEKKA--KYELALV  182 (184)
T ss_dssp             HHHHHHTTHHHH--HHCSCCS
T ss_pred             HHHHHhCCccCH--HHHHHhh
Confidence            888888887653  4555543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=6.9e-15  Score=89.71  Aligned_cols=84  Identities=15%  Similarity=0.018  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...++++..++|+++.++..+|.++...|  ++++|+..|++++.+    +|+++.+++++|.++..+|++++|+..+
T Consensus        35 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~la~~~~~~g~~~~A~~~~  108 (121)
T 1hxi_A           35 EAALAFEAVCQKEPEREEAWRSLGLTQAENE--KDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALASL  108 (121)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444455555555555555555555555555  455555555555555    5555555555555555555555555555


Q ss_pred             HHHHHhCCCc
Q 033417           95 EEALKLCPTN  104 (119)
Q Consensus        95 ~~al~l~p~~  104 (119)
                      +++++++|++
T Consensus       109 ~~al~~~P~~  118 (121)
T 1hxi_A          109 RAWLLSQPQY  118 (121)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHhCcCC
Confidence            5555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.59  E-value=3.3e-15  Score=105.35  Aligned_cols=93  Identities=23%  Similarity=0.238  Sum_probs=71.3

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---------------HHHHHHHHHHHH
Q 033417           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHVNL   82 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~~~   82 (119)
                      ..+......+|..+..+...|+.+++.|  +|++|+..|++++.+    .|.+               ..++.++|.|++
T Consensus       134 ~~~~~a~~~~p~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  207 (336)
T 1p5q_A          134 ESWEMNSEEKLEQSTIVKERGTVYFKEG--KYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHL  207 (336)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhcCCHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445567777888888888888877  788888888888888    6666               577888888888


Q ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           83 LLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+|++++|+.+|+++++++|+++.+++++|.+|.
T Consensus       208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  241 (336)
T 1p5q_A          208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  241 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            8888888888888888888888888888877764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.58  E-value=8.4e-15  Score=89.57  Aligned_cols=83  Identities=34%  Similarity=0.448  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      |..+..+...|..++..|  +|++|+..|.+++.+    +|.++.++.++|.++..+|++++|+..++++++++|+++.+
T Consensus         6 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   79 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   79 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cccHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhh----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH
Confidence            344666677777777776  677777777777777    67777777777777777777777777777777777777777


Q ss_pred             HHHHHhccc
Q 033417          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      ++.+|.++.
T Consensus        80 ~~~l~~~~~   88 (137)
T 3q49_B           80 HFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.58  E-value=2.8e-15  Score=109.70  Aligned_cols=96  Identities=25%  Similarity=0.243  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---------------HHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHV   80 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~   80 (119)
                      +...++.....+|..+..+.+.|+.+++.|  +|++|+..|++++.+    .|.+               ..+|+++|.|
T Consensus       253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGG--KYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhcCHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            334455556678889999999999999998  899999999999999    6666               6899999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           81 NLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+|++|+.+|+++++++|+++++|+++|.+|+.
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~  363 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL  363 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.58  E-value=3.9e-14  Score=80.85  Aligned_cols=82  Identities=27%  Similarity=0.415  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ..+..+...|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+..++++++++|+++.++
T Consensus         7 ~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~   80 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK   80 (91)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence            56788999999999999  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHHHhccc
Q 033417          109 ILCSGSHP  116 (119)
Q Consensus       109 ~~~a~~~~  116 (119)
                      ..+|.++.
T Consensus        81 ~~l~~~~~   88 (91)
T 1na3_A           81 QNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=5.8e-14  Score=82.87  Aligned_cols=97  Identities=16%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|.++..+...|.+++..|  ++++|+..+.+++..    .|.++.++.++|.++..+|++++|+.
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~   93 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--DYQKAYEDGCKTVDL----KPDWGKGYSRKAAALEFLNRFEEAKR   93 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            456778899999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++++++++|+++.++..++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           94 TYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999988764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.57  E-value=6.1e-14  Score=84.07  Aligned_cols=98  Identities=21%  Similarity=0.155  Sum_probs=89.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|..+..+...|.+++..|  ++++|+..+.+++..    .|.++.++..+|.++..+|++++|+.
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~  101 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG--NYAGAVQDCERAICI----DPAYSKAYGRMGLALSSLNKHVEAVA  101 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--chHHHHHHHHHHHhc----CccCHHHHHHHHHHHHHhCCHHHHHH
Confidence            356778888888889999999999999999998  899999999999999    89999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++++|++..+++.+|.++.
T Consensus       102 ~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A          102 YYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCccchHHHHHHHHHHH
Confidence            999999999999999999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.57  E-value=1.7e-14  Score=95.47  Aligned_cols=97  Identities=13%  Similarity=0.086  Sum_probs=64.8

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-------HHHHHHHHHHHHhcC
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-------VLYANRAHVNLLLGN   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~a~~~~~l~~   86 (119)
                      +++...++++...+|+++..+...|.++...|  ++++|+..|++++.+    .|.++       .++.++|.++..+|+
T Consensus        59 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~  132 (228)
T 4i17_A           59 KEAADYFDIAIKKNYNLANAYIGKSAAYRDMK--NNQEYIATLTEGIKA----VPGNATIEKLYAIYYLKEGQKFQQAGN  132 (228)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence            45556666666666666666666666666666  666777767666666    66655       456666666666777


Q ss_pred             HHHHHHHHHHHHHhCCC--cHHHHHHHHhccc
Q 033417           87 YRRALTDTEEALKLCPT--NVKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~--~~~a~~~~a~~~~  116 (119)
                      +++|+..|+++++++|+  ++.+++.+|.+|.
T Consensus       133 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A          133 IEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            77777777777777776  6666666666553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.57  E-value=3.8e-14  Score=86.39  Aligned_cols=79  Identities=16%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      .+...|..+++.|  ++++|+..|++++..    +|.++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus        19 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           19 NPMEEGLSMLKLA--NLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4678999999999  999999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             hcccC
Q 033417          113 GSHPN  117 (119)
Q Consensus       113 ~~~~~  117 (119)
                      .++..
T Consensus        93 ~~~~~   97 (121)
T 1hxi_A           93 VSHTN   97 (121)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.57  E-value=9.9e-15  Score=88.20  Aligned_cols=99  Identities=12%  Similarity=0.038  Sum_probs=90.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|.+...+...|.+++..|  ++++|+..+.+++..    .|.++.++.++|.++..+|++++|+.
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~  105 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--EFQLALKDCEECIQL----EPTFIKGYTRKAAALEAMKDYTKAMD  105 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHHhhHHHHHH
Confidence            456778888888899999999999999999988  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|.+..+++.++.++..
T Consensus       106 ~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A          106 VYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999999987753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.57  E-value=3.5e-14  Score=100.10  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             hhhHHHHHHHHHhcHHH---------------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHH
Q 033417           14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRA   78 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a   78 (119)
                      +++...+.++..++|..               +..+.++|.++++.|  +|++|+..|++++.+    +|.++.+++++|
T Consensus       164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg  237 (336)
T 1p5q_A          164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--AFSAAIESCNKALEL----DSNNEKGLSRRG  237 (336)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHH
Confidence            45667778888888876               799999999999999  999999999999999    999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           79 HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++..+|++++|+.+|+++++++|++..+++.+|.++.
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=4.8e-14  Score=90.35  Aligned_cols=102  Identities=13%  Similarity=0.142  Sum_probs=82.6

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----------------------------
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----------------------------   65 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------------------------   65 (119)
                      ++++..++++..++|+++.++...|.+++..|  ++++|+..+.+++...|.                            
T Consensus        22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a   99 (184)
T 3vtx_A           22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA   99 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46677777777777777777777777777777  677777777776655332                            


Q ss_pred             --CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           66 --SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                        ..|.++.++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..
T Consensus       100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A          100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence              1688888999999999999999999999999999999999999999988754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=5.8e-14  Score=92.84  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=89.4

Q ss_pred             ChhhHHHHHHHHHhcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           13 TESEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .+++...++++..++| .+...+...|.+++..|  ++++|+..|.+++..    +|.++.++.++|.++..+|++++|+
T Consensus        23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~   96 (228)
T 4i17_A           23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--KYKEAADYFDIAIKK----NYNLANAYIGKSAAYRDMKNNQEYI   96 (228)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TCSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--cHHHHHHHHHHHHHh----CcchHHHHHHHHHHHHHcccHHHHH
Confidence            3567888999999998 78888999999999999  899999999999999    9999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcH-------HHHHHHHhccc
Q 033417           92 TDTEEALKLCPTNV-------KVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~l~p~~~-------~a~~~~a~~~~  116 (119)
                      ..++++++++|+++       .+++.+|.++.
T Consensus        97 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  128 (228)
T 4i17_A           97 ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ  128 (228)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999       66888887764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.8e-13  Score=90.77  Aligned_cols=97  Identities=26%  Similarity=0.339  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...+.++...+|..+..+...|..++..|  ++++|+..|++++..    .|.++.++.++|.++..+|++++|+..+
T Consensus       123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3444555566689999999999999999999  899999999999999    9999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHhcccC
Q 033417           95 EEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++++++|+++.+++.+|.++..
T Consensus       197 ~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          197 NKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHH
Confidence            99999999999999999988753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.53  E-value=1.2e-13  Score=84.68  Aligned_cols=96  Identities=10%  Similarity=0.067  Sum_probs=81.4

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc---ccHHHHHHHHHHHHHhcCHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS---ENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      -++++..++++..++|+++..+.++|.+++..|  +|++|+..|.++|++.|...+   ..+.+|.++|.++..+|++++
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~  101 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK--KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSL  101 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh--hHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHH
Confidence            357889999999999999999999999999999  999999999999999433211   224689999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHH
Q 033417           90 ALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      |+..|++++.++|+ ++....+
T Consensus       102 A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A          102 AVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHhhCcC-HHHHHHH
Confidence            99999999999885 4444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.52  E-value=2.9e-13  Score=80.43  Aligned_cols=98  Identities=23%  Similarity=0.338  Sum_probs=90.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|.....+...|..++..|  ++++|+..+.+++..    .|.++..+.++|.++...|++++|+.
T Consensus        25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~   98 (125)
T 1na0_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIE   98 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            356778888888889999999999999999999  899999999999999    89999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++++|+++.++..+|.++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           99 YYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHH
Confidence            999999999999999999988764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.52  E-value=5.8e-14  Score=89.66  Aligned_cols=99  Identities=18%  Similarity=0.224  Sum_probs=91.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH-HHHhcCH--HH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV-NLLLGNY--RR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~-~~~l~~~--~~   89 (119)
                      .+++...+.++...+|.++..+...|..++..|  ++++|+..|.+++.+    +|.++.++.++|.+ +...|++  ++
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQN--DYSNSLLAYRQALQL----RGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            345677888999999999999999999999999  999999999999999    89999999999999 8899999  99


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           90 ALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+..++++++++|+++.+++.+|.++..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFM  127 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999988753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.8e-13  Score=83.23  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=79.1

Q ss_pred             hhhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417           14 ESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      +++...+.++...+|+.   ...+...|.+++..|  +|++|+..+.+++.+    .|.++.+++++|.++..+|++++|
T Consensus        45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A  118 (148)
T 2dba_A           45 GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE--DYDKAETEASKAIEK----DGGDVKALYRRSQALEKLGRLDQA  118 (148)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CccCHHHHHHHHHHHHHcCCHHHH
Confidence            34566677777777766   788888888888888  888888888888888    888888888888888888888888


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +..++++++++|++..++..++.+.
T Consensus       119 ~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          119 VLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            8888888888888888887777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=2.2e-14  Score=84.09  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT--NV  105 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~  105 (119)
                      |.++..+...|..++..|  ++++|+..|.+++.+    .|.++.++.++|.++..+|++++|+..++++++++|.  +.
T Consensus         3 p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAG--NYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred             CCcHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence            444556667777777777  777777777777777    7777777777777777777777777777777777777  77


Q ss_pred             HHHHHHHhcccC
Q 033417          106 KVVILCSGSHPN  117 (119)
Q Consensus       106 ~a~~~~a~~~~~  117 (119)
                      .+++.+|.++..
T Consensus        77 ~~~~~l~~~~~~   88 (112)
T 2kck_A           77 DVWAAKADALRY   88 (112)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            777777776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.51  E-value=2e-13  Score=88.87  Aligned_cols=97  Identities=15%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             hhhHHHHHHHHHhcHHHH----------------HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAA----------------IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR   77 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   77 (119)
                      +++...+.++..+.|.++                ..+...|.+++..|  +|++|+..+.+++.+    +|.++.+++++
T Consensus        55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l  128 (198)
T 2fbn_A           55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--DYPKAIDHASKVLKI----DKNNVKALYKL  128 (198)
T ss_dssp             HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CcccHHHHHHH
Confidence            456667777777666554                88999999999999  999999999999999    99999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |.++..+|++++|+..++++++++|++..++..++.++.
T Consensus       129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A          129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.51  E-value=5.9e-14  Score=91.40  Aligned_cols=87  Identities=25%  Similarity=0.270  Sum_probs=79.9

Q ss_pred             HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH----------------HHHHHHHHHHHHhcCHH
Q 033417           25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS----------------VLYANRAHVNLLLGNYR   88 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----------------~~~~~~a~~~~~l~~~~   88 (119)
                      ...+..+..+...|..++..|  +|++|+..|.+++.+    .|.++                .++.++|.++..+|+++
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  105 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKN--EINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP  105 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            445677899999999999999  999999999999999    66665                89999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+.+|+++++++|+++.+++.+|.++..
T Consensus       106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~  134 (198)
T 2fbn_A          106 KAIDHASKVLKIDKNNVKALYKLGVANMY  134 (198)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            99999999999999999999999998753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.51  E-value=8.1e-14  Score=101.94  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=85.3

Q ss_pred             hhhHHHHHHHHHhcHHH---------------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHH
Q 033417           14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRA   78 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a   78 (119)
                      +++...+.++..++|..               ...+.++|.++++.|  +|++|+..|+++|.+    +|.++.+|+++|
T Consensus       285 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~~g  358 (457)
T 1kt0_A          285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--EYTKAVECCDKALGL----DSANEKGLYRRG  358 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHH
Confidence            45667777777777776               799999999999999  999999999999999    999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           79 HVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++..+|++++|+.+|+++++++|++..++..++.++.
T Consensus       359 ~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.51  E-value=4.5e-13  Score=83.76  Aligned_cols=96  Identities=27%  Similarity=0.296  Sum_probs=82.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|..+..+...|.+++..|  +|++|+..+.+++.+    .|.++.+++++|.++..+|++++|+.
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~  102 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALR  102 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhccHHHHHH
Confidence            345677888888888888999999999999988  899999999999999    88889999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhc
Q 033417           93 DTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      .++++++++|.+..++..++.+
T Consensus       103 ~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A          103 DYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999888887554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.50  E-value=5.6e-14  Score=96.76  Aligned_cols=81  Identities=35%  Similarity=0.457  Sum_probs=57.1

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+...|+.++..|  +|++|+..|++++..    +|.++.++.++|.++..+|++++|+.+++++++++|+++.+++
T Consensus         3 ~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3456666777777766  677777777777777    6777777777777777777777777777777777777777777


Q ss_pred             HHHhccc
Q 033417          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      .+|.+|.
T Consensus        77 ~lg~~~~   83 (281)
T 2c2l_A           77 FLGQCQL   83 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.50  E-value=1.4e-13  Score=88.17  Aligned_cols=91  Identities=11%  Similarity=0.109  Sum_probs=78.7

Q ss_pred             ChhhHHHHHHHHHhcHH------------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc---ccCCCcccHHHH---
Q 033417           13 TESEKADLDAIAALKES------------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ---NVLSDSENSVLY---   74 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~---   74 (119)
                      .++++..++++..++|+            ++..|.++|.++.+.|  +|++|+..|+++|++   .-..+|+++.+|   
T Consensus        27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~  104 (159)
T 2hr2_A           27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKALHYFNRRGELNQDEGKLWISA  104 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence            35678888999998888            3459999999999999  899999999999987   111257889999   


Q ss_pred             -HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Q 033417           75 -ANRAHVNLLLGNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        75 -~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                       +++|.++..+|++++|+.+|+++++++|++.
T Consensus       105 ~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A          105 VYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence             9999999999999999999999999998754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=4e-13  Score=90.12  Aligned_cols=99  Identities=19%  Similarity=0.119  Sum_probs=88.6

Q ss_pred             ChhhHHHHHHHHHh----cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417           13 TESEKADLDAIAAL----KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        13 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      .++++..++++...    +|..+..+...|..++..|  ++++|+..|.+++.+    +|.++.++.++|.++...|+++
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHH
Confidence            34666777777765    5788999999999999999  899999999999999    9999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+..++++++++|+++.+++.+|.++..
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            99999999999999999999999988753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.49  E-value=6.8e-13  Score=94.91  Aligned_cols=96  Identities=20%  Similarity=0.189  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHH----------------hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHH
Q 033417           14 ESEKADLDAIAA----------------LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANR   77 (119)
Q Consensus        14 ~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   77 (119)
                      +++...+.++..                .+|..+..+.++|.++++.|  +|++|+..|++++++    +|.++.+++++
T Consensus       240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~l  313 (370)
T 1ihg_A          240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--DWQGAVDSCLEALEI----DPSNTKALYRR  313 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHh----CchhHHHHHHH
Confidence            455666677766                78889999999999999999  999999999999999    99999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           78 AHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |.++..+|++++|+.+++++++++|++..++..++.++
T Consensus       314 g~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          314 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999998888765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.49  E-value=5.4e-13  Score=80.59  Aligned_cols=94  Identities=9%  Similarity=0.002  Sum_probs=84.2

Q ss_pred             ChhhHHHHHHHHHhcHHHH---HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcC
Q 033417           13 TESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~   86 (119)
                      .+++...+..+...+|++.   ..+...|.+++..|  +|++|+..|.+++..    .|++   +.+++++|.++..+|+
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~la~~~~~~g~   91 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR--NFQLAEAQFRDLVSR----YPTHDKAAGGLLKLGLSQYGEGK   91 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHcCC
Confidence            3567788888888888877   79999999999999  999999999999999    7877   8889999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417           87 YRRALTDTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      +++|+..++++++..|+++.+...+.
T Consensus        92 ~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           92 NTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            99999999999999999987766544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.49  E-value=2.2e-13  Score=83.14  Aligned_cols=95  Identities=14%  Similarity=0.082  Sum_probs=86.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|+++..+...|.+++..|  ++++|+..|.+++.+    +|.++.+++++|.++..+|++++|+.
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~   98 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHHhhHHHHHH
Confidence            356778899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCC-----cHHHHHHHHh
Q 033417           93 DTEEALKLCPT-----NVKVVILCSG  113 (119)
Q Consensus        93 ~~~~al~l~p~-----~~~a~~~~a~  113 (119)
                      .++++++++|+     +......+..
T Consensus        99 ~~~~a~~~~p~~~~~~~~~~~~~l~~  124 (137)
T 3q49_B           99 NLQRAYSLAKEQRLNFGDDIPSALRI  124 (137)
T ss_dssp             HHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred             HHHHHHHHChhHHHHHHHHHHHHHHH
Confidence            99999999987     5555554443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=5.3e-13  Score=79.87  Aligned_cols=87  Identities=30%  Similarity=0.379  Sum_probs=81.4

Q ss_pred             HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+|..+..+...|..++..|  ++++|+..|.+++..    .|.++.++..+|.++...|++++|+..++++++++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVE--NFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcchhhhHHHHHHHHHHHHcc--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            346788999999999999999  999999999999999    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC
Q 033417          105 VKVVILCSGSHPN  117 (119)
Q Consensus       105 ~~a~~~~a~~~~~  117 (119)
                      +.+++.+|.++..
T Consensus        80 ~~~~~~~~~~~~~   92 (131)
T 2vyi_A           80 SKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=6.1e-13  Score=78.39  Aligned_cols=82  Identities=34%  Similarity=0.459  Sum_probs=77.5

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+...|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+..++++++++|+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (118)
T 1elw_A            3 QVNELKEKGNKALSVG--NIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   76 (118)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence            4678899999999999  999999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHhcccC
Q 033417          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      .+|.++..
T Consensus        77 ~~a~~~~~   84 (118)
T 1elw_A           77 RKAAALEF   84 (118)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=3.1e-13  Score=89.00  Aligned_cols=82  Identities=20%  Similarity=0.239  Sum_probs=77.3

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH----------------HHHHHHHhcCHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN----------------RAHVNLLLGNYRRALTD   93 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------~a~~~~~l~~~~~A~~~   93 (119)
                      .+..+...|..++..|  +|++|+..|++++.+    +|+++.+++.                +|.++..+|++++|+..
T Consensus         3 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAG--QNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3567889999999999  999999999999999    9999999999                99999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcccC
Q 033417           94 TEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+++++++|+++.+++.+|.++..
T Consensus        77 ~~~al~~~p~~~~~~~~lg~~~~~  100 (208)
T 3urz_A           77 YKELLQKAPNNVDCLEACAEMQVC  100 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHH
Confidence            999999999999999999998753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.48  E-value=1.7e-13  Score=82.71  Aligned_cols=85  Identities=34%  Similarity=0.479  Sum_probs=79.9

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .|..+.++...|..++..|  ++++|+..|.+++..    .|.++.++.++|.++...|++++|+..++++++++|+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKG--DYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTT--CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            3557889999999999999  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 033417          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      +++.+|.++..
T Consensus        86 ~~~~la~~~~~   96 (133)
T 2lni_A           86 GYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.47  E-value=5.4e-14  Score=107.29  Aligned_cols=96  Identities=11%  Similarity=-0.001  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++..++|+++.++..+|..++..|  ++++|+..|++++++    +|+++.+++++|.++..+|++++ +..
T Consensus       450 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~lg~~~~~~g~~~~-~~~  522 (681)
T 2pzi_A          450 AKATRKLDDLAERVGWRWRLVWYRAVAELLTG--DYDSATKHFTEVLDT----FPGELAPKLALAATAELAGNTDE-HKF  522 (681)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCChHH-HHH
Confidence            45666777777778888888888888888877  788888888888887    67777777777777777777777 777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+++++++|++..+++.+|.++.
T Consensus       523 ~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          523 YQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCchHHHHHHHHHHHH
Confidence            77777777777777777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.47  E-value=1.1e-13  Score=105.60  Aligned_cols=98  Identities=15%  Similarity=0.045  Sum_probs=91.7

Q ss_pred             ChhhHHHHHHHH--------HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh
Q 033417           13 TESEKADLDAIA--------ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l   84 (119)
                      .+++.+.++++.        ..+|+++..+..+|..++..|  ++++|+..|++++++    +|+++.+++++|.++..+
T Consensus       407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG--DVAKATRKLDDLAER----VGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC--CHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHc
Confidence            356778888888        888999999999999999999  999999999999999    999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           85 GNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |++++|+..|+++++++|+++.+++.+|.++.
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.46  E-value=5.5e-13  Score=97.83  Aligned_cols=98  Identities=18%  Similarity=0.104  Sum_probs=92.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh--------chHhHHHHHHHHHHHHhcccCCCc---ccHHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKK--------GKKHYYDAIDCYTRAINQNVLSDS---ENSVLYANRAHVN   81 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~   81 (119)
                      .+++...+.++..++|+++..+..+|..+...        |  ++++|+..|++++.+    +|   .++.+++++|.++
T Consensus       195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~  268 (474)
T 4abn_A          195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK--ISQQALSAYAQAEKV----DRKASSNPDLHLNRATLH  268 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHH----CGGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHH
Confidence            45778889999999999999999999999998        8  899999999999999    88   9999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           82 LLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ..+|++++|+..++++++++|+++.++..++.++.
T Consensus       269 ~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  303 (474)
T 4abn_A          269 KYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE  303 (474)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.46  E-value=9e-14  Score=81.92  Aligned_cols=73  Identities=10%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           26 LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+|+++..+...|.+++..|  +|++|+..|++++++    +|.++.+|+++|.++..+|++++|+..+++++++.|.+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHD--NASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            36888999999999999999  999999999999999    99999999999999999999999999999999997754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.46  E-value=6.7e-13  Score=92.88  Aligned_cols=98  Identities=16%  Similarity=0.071  Sum_probs=92.8

Q ss_pred             ChhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417           13 TESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      .+++...+.++..++|.  ++..+...|..+...|  ++++|+..|++++.+    .|.++.++.++|.++..+|++++|
T Consensus       193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A  266 (365)
T 4eqf_A          193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG--EFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEA  266 (365)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            45778889999999998  8999999999999999  999999999999999    999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +..++++++++|+++.+++.+|.++.
T Consensus       267 ~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          267 VEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            99999999999999999999998875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.45  E-value=4.7e-13  Score=80.03  Aligned_cols=84  Identities=17%  Similarity=0.136  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...+.++...+|+++..+...|..++..|  ++++|+..|.+++.+    +|.++.+++++|.++..+|++++|+..+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE--QFDAALPHLRAALDF----DPTYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4667888899999999999999999999999  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHHhCCCc
Q 033417           95 EEALKLCPTN  104 (119)
Q Consensus        95 ~~al~l~p~~  104 (119)
                      +++++++|.+
T Consensus        77 ~~al~~~~~~   86 (115)
T 2kat_A           77 ESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhcccc
Confidence            9999998853

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.45  E-value=1.2e-12  Score=81.78  Aligned_cols=83  Identities=31%  Similarity=0.411  Sum_probs=78.7

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +.+..+...|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+..++++++++|.++.++
T Consensus        11 ~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   84 (166)
T 1a17_A           11 KRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   84 (166)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            45788999999999999  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccC
Q 033417          109 ILCSGSHPN  117 (119)
Q Consensus       109 ~~~a~~~~~  117 (119)
                      +.+|.++..
T Consensus        85 ~~~a~~~~~   93 (166)
T 1a17_A           85 YRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=4.6e-13  Score=82.25  Aligned_cols=84  Identities=32%  Similarity=0.426  Sum_probs=78.8

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      +|..+..+...|..++..|  +|++|+..|++++..    .|++   ..++.++|.++..+|++++|+..++++++++|+
T Consensus        24 ~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCG--DYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            4567888999999999999  999999999999999    8877   899999999999999999999999999999999


Q ss_pred             cHHHHHHHHhccc
Q 033417          104 NVKVVILCSGSHP  116 (119)
Q Consensus       104 ~~~a~~~~a~~~~  116 (119)
                      ++.+++.+|.++.
T Consensus        98 ~~~~~~~~a~~~~  110 (148)
T 2dba_A           98 DVKALYRRSQALE  110 (148)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.44  E-value=2e-12  Score=77.39  Aligned_cols=99  Identities=21%  Similarity=0.296  Sum_probs=91.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+......+|.....+...|..+...|  ++++|+..+.+++..    .|.++..+..+|.++...|++++|+.
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~   90 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIE   90 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc--CHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHhcCHHHHHH
Confidence            356777888888889989999999999999999  899999999999999    89999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++..|.+..+++.+|.++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           91 YYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999988754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.44  E-value=4.2e-13  Score=99.81  Aligned_cols=94  Identities=11%  Similarity=0.023  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...++++...+|.++..+...|..++..|  ++++|+..|++++++    +|+++.++.++|.++..+|++++|+..++
T Consensus         8 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            8 ELLQLRAAVRHRPQDFVAWLMLADAELGMG--DTTAGEMAVQRGLAL----HPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------CCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            444444445555555555555555555555  455555555555555    55555555555555555555555555555


Q ss_pred             HHHHhCCCcHHHHHHHHhcc
Q 033417           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++|++..+++.+|.++
T Consensus        82 ~al~~~p~~~~~~~~la~~~  101 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHAL  101 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHH
Confidence            55555555555555555444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.44  E-value=2.1e-13  Score=96.31  Aligned_cols=83  Identities=22%  Similarity=0.151  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-----------------HHHHHHHHHHHHhcCHHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-----------------VLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~~~~a~~~~~l~~~~~A   90 (119)
                      +..+..+...|+.+++.|  +|++|+..|.+++.+    .|.+.                 .+++++|.|++++|+|++|
T Consensus       176 ~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A  249 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEE--KLEEAMQQYEMAIAY----MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA  249 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSS--CCHHHHHHHHHHHHH----SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            444555666666666655  566666666666666    55444                 2556666666666666666


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +.+|+++++++|++.++++++|.+|.
T Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~a~~  275 (338)
T 2if4_A          250 IGHCNIVLTEEEKNPKALFRRGKAKA  275 (338)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            66666666666666666666665554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=4.6e-13  Score=98.23  Aligned_cols=97  Identities=15%  Similarity=0.162  Sum_probs=91.2

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh---------
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---------   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---------   84 (119)
                      +++...+.++..++|+++.++..+|.+++..|  ++++|+..|++++++    +|+ +.++.++|.++..+         
T Consensus       120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~-~~~~~~lg~~~~~~~~~~~~~~~  192 (474)
T 4abn_A          120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--DVTSAHTCFSGALTH----CKN-KVSLQNLSMVLRQLQTDSGDEHS  192 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCC-HHHHHHHHHHHHHhccCChhhhh
Confidence            78889999999999999999999999999999  899999999999999    888 69999999999999         


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           85 GNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |++++|+..++++++++|+++.+|+.+|.+|..
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  225 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS  225 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.44  E-value=1.8e-12  Score=81.70  Aligned_cols=98  Identities=18%  Similarity=0.068  Sum_probs=85.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|.....+...|..++..|  ++++|+..+.+++..    .|.++.++..+|.++...|++++|+.
T Consensus        58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQ--KYDLAVPLLIKVAEA----NPINFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence            346677788888888888888999999999988  899999999999998    88888899999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++.+|+++.+++.+|.++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~la~~~~  155 (186)
T 3as5_A          132 SFKIALGLRPNEGKVHRAIAFSYE  155 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCccchHHHHHHHHHHH
Confidence            999999999999999988888764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.44  E-value=8.6e-13  Score=97.12  Aligned_cols=96  Identities=27%  Similarity=0.296  Sum_probs=91.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++.+.++++..++|+.+..+..+|.++++.|  +|++|+..|++++++    +|.++.+++++|.++..+|++++|+.
T Consensus        22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            567889999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhc
Q 033417           93 DTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      .++++++++|++..++..++.+
T Consensus        96 ~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           96 DYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999888876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.44  E-value=5.7e-13  Score=79.87  Aligned_cols=83  Identities=27%  Similarity=0.310  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN----  104 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----  104 (119)
                      +.+..+...|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+..+++++.+.|.+    
T Consensus         2 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            2 KQALKEKELGNDAYKKK--DFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence            46788999999999999  999999999999999    99999999999999999999999999999999999877    


Q ss_pred             ---HHHHHHHHhcccC
Q 033417          105 ---VKVVILCSGSHPN  117 (119)
Q Consensus       105 ---~~a~~~~a~~~~~  117 (119)
                         +.+++.+|.++..
T Consensus        76 ~~~~~~~~~la~~~~~   91 (131)
T 1elr_A           76 RQIAKAYARIGNSYFK   91 (131)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence               8999999988753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.43  E-value=7.2e-13  Score=94.80  Aligned_cols=88  Identities=20%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------CCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------SDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ...+..+...|+.+++.|  +|++|+..|++++.+.+.            .+|....++.++|.|++++|++++|+.+|+
T Consensus       220 ~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  297 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL  297 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            345788999999999999  999999999999982111            178889999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhcccC
Q 033417           96 EALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++|+++++++++|.+|..
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~  319 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQG  319 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHH
Confidence            9999999999999999998854

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.43  E-value=7.2e-13  Score=80.05  Aligned_cols=80  Identities=13%  Similarity=0.052  Sum_probs=73.6

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---H
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRALTDTEEALKLCPTN---V  105 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~  105 (119)
                      ..++..|..++..|  +|++|+..|.+++..    .|.++   .+++.+|.++...|++++|+..++++++.+|++   +
T Consensus         3 ~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   76 (129)
T 2xev_A            3 RTAYNVAFDALKNG--KYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA   76 (129)
T ss_dssp             CCHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred             HHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence            45678999999999  999999999999999    77766   899999999999999999999999999999999   8


Q ss_pred             HHHHHHHhcccC
Q 033417          106 KVVILCSGSHPN  117 (119)
Q Consensus       106 ~a~~~~a~~~~~  117 (119)
                      .+++.+|.++..
T Consensus        77 ~~~~~la~~~~~   88 (129)
T 2xev_A           77 GGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.43  E-value=1.7e-12  Score=75.44  Aligned_cols=68  Identities=16%  Similarity=0.288  Sum_probs=65.2

Q ss_pred             HHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           35 KEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      .+.|..++..|  +|++|+..|+++++.    +|.++. +++++|.++..+|++++|+..|+++++++|++..++
T Consensus         4 ~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQG--DIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHT--CHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            56889999999  899999999999999    999999 999999999999999999999999999999999888

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.43  E-value=1.6e-12  Score=89.94  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHH--HhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYV--KKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      .+++...++++...+|+........+...+  ..|  ++++|+..|+++++.    .|.++.+++++|.++..+|++++|
T Consensus       146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~--~~~eA~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~eA  219 (291)
T 3mkr_A          146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE--KLQDAYYIFQEMADK----CSPTLLLLNGQAACHMAQGRWEAA  219 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHH
Confidence            456778888888888876544443343232  335  799999999999999    899999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +..++++++++|+++.+++++|.++.
T Consensus       220 ~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          220 EGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999987664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.43  E-value=1.6e-12  Score=90.54  Aligned_cols=98  Identities=19%  Similarity=0.157  Sum_probs=91.8

Q ss_pred             hhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           14 ESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      +++...+.++...+|.  .+..+...|..+...|  ++++|+..|.+++.+    .|.++.++.++|.++..+|++++|+
T Consensus       198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--EYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4667788888899999  8999999999999999  999999999999999    9999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..++++++++|+++.+++.+|.++..
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999988753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.43  E-value=2.2e-12  Score=77.30  Aligned_cols=96  Identities=18%  Similarity=0.259  Sum_probs=86.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc-------HHHHHHHHHHHHHhc
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN-------SVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~a~~~~~l~   85 (119)
                      .+++...+.++...+|..+..+...|..++..|  ++++|+..|.+++..    .|.+       +.+++++|.++..+|
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~   93 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--DYNKCRELCEKAIEV----GRENREDYRQIAKAYARIGNSYFKEE   93 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----ccccchhHHHHHHHHHHHHHHHHHhc
Confidence            456788899999999999999999999999999  999999999999999    6655       889999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           86 NYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++|+..+++++++.| ++.....++.+.
T Consensus        94 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           94 KYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            99999999999999999 688777776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=6.1e-13  Score=93.91  Aligned_cols=95  Identities=20%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...++++..++|.++..+...|..+...|  ++++|+..|++++++    .|+++.++.++|.++...|++++|+..+
T Consensus       289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          289 EAEDCYNTALRLCPTHADSLNNLANIKREQG--NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4445555555555555556666666666555  566666666666665    6666666666666666666666666666


Q ss_pred             HHHHHhCCCcHHHHHHHHhcc
Q 033417           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++|+++.+++.+|.++
T Consensus       363 ~~a~~~~p~~~~a~~~lg~~~  383 (388)
T 1w3b_A          363 KEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHhhCCCCHHHHHhHHHHH
Confidence            666666666666666666654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=2.2e-12  Score=91.05  Aligned_cols=97  Identities=24%  Similarity=0.215  Sum_probs=67.1

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+.+...++|+++..+...|..+...|  ++++|+..|++++++    +|.++.++.++|.++...|++++|+..
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~  293 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQG--LIDLAIDTYRRAIEL----QPHFPDAYCNLANALKEKGSVAEAEDC  293 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----CSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            44556666666666766677777777777766  677777777777777    666677777777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|+++.++..+|.++.
T Consensus       294 ~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          294 YNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhCcccHHHHHHHHHHHH
Confidence            77777777777777766666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.42  E-value=1.2e-12  Score=97.35  Aligned_cols=99  Identities=13%  Similarity=0.014  Sum_probs=93.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++..++|+++..+...|..+...|  ++++|+..|++++++    +|+++.++.++|.++..+|++++|+.
T Consensus        39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~  112 (568)
T 2vsy_A           39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ--RHAEAAVLLQQASDA----APEHPGIALWLGHALEDAGQAEAAAA  112 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            456778899999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|++..+++.+|.++..
T Consensus       113 ~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A          113 AYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.41  E-value=6.6e-13  Score=89.55  Aligned_cols=91  Identities=16%  Similarity=0.093  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHhcHHH---HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH--------
Q 033417           15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL--------   83 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~--------   83 (119)
                      +++..++++...+|.+   +.++...|.+++..|  +|++|+..|++++...|. +|..+.+++.+|.+++.        
T Consensus        33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~~~  109 (261)
T 3qky_A           33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--EYLLAASEYERFIQIYQI-DPRVPQAEYERAMCYYKLSPPYELD  109 (261)
T ss_dssp             HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred             HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHHhccccccc
Confidence            4555555555555555   666666666666666  666666666666666222 22445566666666666        


Q ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           84 LGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +|++++|+..++++++..|+++.+.
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHH
Confidence            6666666666666666666554444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.41  E-value=6e-13  Score=93.90  Aligned_cols=97  Identities=15%  Similarity=0.109  Sum_probs=75.4

Q ss_pred             ChhhHHHHHHHHHhcHHHH-----------------HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHH
Q 033417           13 TESEKADLDAIAALKESAA-----------------IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYA   75 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   75 (119)
                      .+++...+.++..+.|.+.                 ..+.++|.++++.|  +|++|+..|+++|.+    +|.++.+++
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~  268 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK--RYDEAIGHCNIVLTE----EEKNPKALF  268 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT--CCHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHH
Confidence            4567788888888888877                 48999999999999  999999999999999    999999999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           76 NRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        76 ~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++|.++..+|++++|+.+++++++++|++..++..++.+.
T Consensus       269 ~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          269 RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=3.8e-12  Score=84.27  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=91.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|.++..+...|..++..|  ++++|+..+.++++.    .|.++.++..+|.++..+|++++|+.
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            457888999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhC------CCcHHHHHHHHhcc
Q 033417           93 DTEEALKLC------PTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~------p~~~~a~~~~a~~~  115 (119)
                      .++++++++      |++..++..++.++
T Consensus       229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          229 TLDAARTKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence            999999999      99999999888775

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=1.3e-12  Score=85.17  Aligned_cols=95  Identities=21%  Similarity=0.189  Sum_probs=82.5

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+.++  ++| .+..+...|.+++..|  ++++|+..|.+++.+    +|.++.+++++|.++..+|++++|+..
T Consensus        23 ~~A~~~~~~a--~~~-~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~   93 (213)
T 1hh8_A           23 KGALDAFSAV--QDP-HSRICFNIGCMYTILK--NMTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKD   93 (213)
T ss_dssp             HHHHHHHHTS--SSC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHH--cCC-ChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcccHHHHHHH
Confidence            3445555554  233 5789999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcH----------------HHHHHHHhcccC
Q 033417           94 TEEALKLCPTNV----------------KVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~----------------~a~~~~a~~~~~  117 (119)
                      +++++++.|.+.                .+++.+|.++..
T Consensus        94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence            999999888766                999999988753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.39  E-value=2.6e-12  Score=89.53  Aligned_cols=98  Identities=14%  Similarity=0.101  Sum_probs=92.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++..++|+++..+...|..+...|  ++++|+..|++++.+    .|.++.++.++|.++..+|++++|+.
T Consensus       233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN--QSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            456788899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCc-----------HHHHHHHHhccc
Q 033417           93 DTEEALKLCPTN-----------VKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~-----------~~a~~~~a~~~~  116 (119)
                      .++++++++|++           ..++..+|.++.
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  341 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS  341 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence            999999999988           899999998774

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=5.7e-12  Score=83.00  Aligned_cols=94  Identities=26%  Similarity=0.234  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...+.++...+|.....+...|..+...|  ++++|+..|.+++..    .|.++.++..+|.++...|++++|+..++
T Consensus        76 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  149 (243)
T 2q7f_A           76 ALAFYDKALELDSSAATAYYGAGNVYVVKE--MYKEAKDMFEKALRA----GMENGDLFYMLGTVLVKLEQPKLALPYLQ  149 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TCCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            344444444444444444555555555444  455555555555554    44444444555555555555555555555


Q ss_pred             HHHHhCCCcHHHHHHHHhcc
Q 033417           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++|+++.+++.+|.++
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A          150 RAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHH
Confidence            55555554444444444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.38  E-value=5e-12  Score=86.37  Aligned_cols=99  Identities=19%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|..+..+...|..+...|  ++++|+..+.+++..    .|.++.++.++|.++...|++++|+.
T Consensus       154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSN--NYDSAAANLRRAVEL----RPDDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            356777888888999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|+++.+++.+|.++..
T Consensus       228 ~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          228 AYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.38  E-value=3.3e-12  Score=84.15  Aligned_cols=96  Identities=11%  Similarity=-0.007  Sum_probs=58.0

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|.....+...|..++..|  ++++|+..+.+++..    .|.++.++..+|.++...|++++|+..
T Consensus       108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLE--QPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34455555555555555666666666666666  566666666666666    555566666666666666666666666


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++.+|+++.+++.+|.++
T Consensus       182 ~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          182 FAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHH
Confidence            6666666666666666555554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.38  E-value=5.2e-12  Score=74.89  Aligned_cols=81  Identities=27%  Similarity=0.393  Sum_probs=76.5

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+...|..++..|  ++++|+..|.+++..    .|.++.++..+|.++...|++++|+..++++++++|.++.+++.
T Consensus         9 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            9 AEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            778899999999999  999999999999999    89999999999999999999999999999999999999999999


Q ss_pred             HHhcccC
Q 033417          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.++..
T Consensus        83 la~~~~~   89 (125)
T 1na0_A           83 LGNAYYK   89 (125)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.38  E-value=3.2e-12  Score=91.31  Aligned_cols=97  Identities=19%  Similarity=0.221  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .....+..+...+|.++..+...|..+++.|  ++++|+..|++++..    +|.++.+++.+|.++..+|++++|+..+
T Consensus        10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~   83 (450)
T 2y4t_A           10 GVDLGTENLYFQSMADVEKHLELGKKLLAAG--QLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDL   83 (450)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4455667777788999999999999999988  899999999999999    8889999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHhcccC
Q 033417           95 EEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++++++|+++.+++.+|.+|..
T Consensus        84 ~~al~~~p~~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           84 TKVIQLKMDFTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHH
Confidence            99999999999999999887753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.37  E-value=7.2e-12  Score=83.29  Aligned_cols=94  Identities=18%  Similarity=0.137  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHh--cccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAIN--QNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +...+.++...+|.....+...|..++..|  ++++|+..|.+++.  .    .|.++.++.++|.++...|++++|+..
T Consensus        90 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~  163 (252)
T 2ho1_A           90 ADEEYRKALASDSRNARVLNNYGGFLYEQK--RYEEAYQRLLEASQDTL----YPERSRVFENLGLVSLQMKKPAQAKEY  163 (252)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTCTT----CTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCcCcHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhCcc----CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            333444444444444444444444444444  44444444444444  3    444444444444444444444444444


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|.++.+++.+|.++
T Consensus       164 ~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          164 FEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHH
Confidence            4444444444444444444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.36  E-value=8.7e-12  Score=83.51  Aligned_cols=94  Identities=13%  Similarity=0.099  Sum_probs=86.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|.++..+...|..++..|  ++++|+..|.+++.+    +|.++.++.++|.++..+|++++|+.
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A           59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHH
Confidence            456778899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHH
Q 033417           93 DTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a  112 (119)
                      .++++++++|++.......+
T Consensus       133 ~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A          133 DLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHH
Confidence            99999999999986655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.36  E-value=9e-12  Score=80.92  Aligned_cols=98  Identities=9%  Similarity=0.073  Sum_probs=59.6

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      +++...++++...+|.....+...|..++.. |  ++++|+..+++++. .|. .|....++.++|.++...|++++|+.
T Consensus        59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A           59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLN--RPAESMAYFDKALA-DPT-YPTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHT-STT-CSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc-CcC-CcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            3455555555566666666666666666666 5  56666666666666 111 55556666666666666666666666


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++++++.+|+++.+++.+|.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~  157 (225)
T 2vq2_A          135 YLKRSLAAQPQFPPAFKELARTK  157 (225)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHH
Confidence            66666666666666666666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.36  E-value=2e-12  Score=81.46  Aligned_cols=98  Identities=14%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|..+..+...|..++..|  ++++|+..+.+++..    .|.++.++..+|.++...|++++|+..
T Consensus        25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~   98 (186)
T 3as5_A           25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTG--AVDRGTELLERSLAD----APDNVKVATVLGLTYVQVQKYDLAVPL   98 (186)
T ss_dssp             HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            34556666666677888999999999999999  899999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcccC
Q 033417           94 TEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++++|.++.+++.+|.++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           99 LIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHhHHHHHHHHHHHHH
Confidence            999999999999999999987753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.36  E-value=3e-12  Score=85.92  Aligned_cols=100  Identities=11%  Similarity=0.037  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+.++...+|.++..+...|.+++..|  ++++|+..+.+++.. +......+.++.++|.++..+|++++|+..
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~   96 (272)
T 3u4t_A           20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA--KYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQ   96 (272)
T ss_dssp             HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT--CHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            45667777777777777777777777777777  777777777777773 321222255577777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|.++.+++.+|.++.
T Consensus        97 ~~~a~~~~~~~~~~~~~l~~~~~  119 (272)
T 3u4t_A           97 YQAAVDRDTTRLDMYGQIGSYFY  119 (272)
T ss_dssp             HHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHHH
Confidence            77777777777777777777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=4e-12  Score=74.27  Aligned_cols=86  Identities=19%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHh-cCHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-GNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-~~~~~   89 (119)
                      .+++...++++...+|.....+...|..++..|  ++++|+..|++++..    .|.  ++.++.++|.++..+ |++++
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~   95 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLE--RYEEAVDCYNYVINV----IEDEYNKDVWAAKADALRYIEGKEVE   95 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----SCCTTCHHHHHHHHHHHTTCSSCSHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CcccchHHHHHHHHHHHHHHhCCHHH
Confidence            457888899999999999999999999999999  899999999999999    898  999999999999999 99999


Q ss_pred             HHHHHHHHHHhCCCc
Q 033417           90 ALTDTEEALKLCPTN  104 (119)
Q Consensus        90 A~~~~~~al~l~p~~  104 (119)
                      |+..+++++...|.+
T Consensus        96 A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           96 AEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhhcccCC
Confidence            999999999999975

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.35  E-value=6.1e-12  Score=85.95  Aligned_cols=99  Identities=16%  Similarity=0.110  Sum_probs=92.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|.++..+...|..++..|  ++++|+..|++++..    .|.++.++.++|.++..+|++++|+.
T Consensus       188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGN--RPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            456778889999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCC------------cHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPT------------NVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~------------~~~a~~~~a~~~~~  117 (119)
                      .++++++++|+            +..++..+|.++..
T Consensus       262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence            99999999999            89999999987743

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=1.1e-11  Score=83.59  Aligned_cols=98  Identities=11%  Similarity=0.084  Sum_probs=86.2

Q ss_pred             ChhhHHHHHHHHHhcH---HHHHHHHHHhHHHHH--------hchHhHHHHHHHHHHHHhcccCCCcccHHHH-------
Q 033417           13 TESEKADLDAIAALKE---SAAIELKEKGNEYVK--------KGKKHYYDAIDCYTRAINQNVLSDSENSVLY-------   74 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~--------~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-------   74 (119)
                      .+++...++++...+|   ....+++..|.+++.        .|  ++++|+..|++++..    .|+++.+.       
T Consensus        68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~  141 (261)
T 3qky_A           68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT--DTRKAIEAFQLFIDR----YPNHELVDDATQKIR  141 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH--HHHHHHHHHHHHHHH----CTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHHHH----CcCchhHHHHHHHHH
Confidence            3567788899988866   568899999999999        88  899999999999999    77665444       


Q ss_pred             ----------HHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHhccc
Q 033417           75 ----------ANRAHVNLLLGNYRRALTDTEEALKLCPT---NVKVVILCSGSHP  116 (119)
Q Consensus        75 ----------~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~a~~~~  116 (119)
                                +.+|.++..+|++++|+..|+++++..|+   .+.+++.+|.+|.
T Consensus       142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence                      88999999999999999999999999998   5789999998875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.34  E-value=8.6e-12  Score=82.92  Aligned_cols=97  Identities=20%  Similarity=0.103  Sum_probs=70.4

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|..+..+...|..++..|  ++++|+..|.+++..    .|.++.++.++|.++...|++++|+..
T Consensus        54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~  127 (252)
T 2ho1_A           54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEM--EPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQR  127 (252)
T ss_dssp             GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45666667777777777777777777777777  677777777777777    677777777777777777777777777


Q ss_pred             HHHHHH--hCCCcHHHHHHHHhccc
Q 033417           94 TEEALK--LCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~--l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++  .+|.+..+++.+|.++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~la~~~~  152 (252)
T 2ho1_A          128 LLEASQDTLYPERSRVFENLGLVSL  152 (252)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhCccCcccHHHHHHHHHHHH
Confidence            777777  66777777777776654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.34  E-value=5.4e-12  Score=86.33  Aligned_cols=97  Identities=14%  Similarity=0.044  Sum_probs=73.6

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|+.+..+...|..+...|  ++++|+..|.+++..    .|.+...+..+|.++...|++++|+..
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVES--EHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERF  181 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45666777777777777777777777777777  777777777777777    777777777777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|+++.+++.+|.++.
T Consensus       182 ~~~al~~~~~~~~~~~~l~~~~~  204 (330)
T 3hym_B          182 FSQALSIAPEDPFVMHEVGVVAF  204 (330)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777777654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.34  E-value=3.2e-12  Score=89.39  Aligned_cols=92  Identities=13%  Similarity=-0.029  Sum_probs=72.8

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|+++..+...|..++..|  ++++|+..|++++.+    +|.++.++.++|.++..+|++++|+..
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~  155 (365)
T 4eqf_A           82 PVTILFMEAAILQDPGDAEAWQFLGITQAENE--NEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEA  155 (365)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHccccHHHHHHH
Confidence            45667777888888888888888888888888  788888888888888    888888888888888888888888888


Q ss_pred             HHHHHHhCCCcHHHHHHH
Q 033417           94 TEEALKLCPTNVKVVILC  111 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~  111 (119)
                      ++++++++|++..++..+
T Consensus       156 ~~~al~~~p~~~~~~~~~  173 (365)
T 4eqf_A          156 LKNWIKQNPKYKYLVKNK  173 (365)
T ss_dssp             HHHHHHHCHHHHCC----
T ss_pred             HHHHHHhCccchHHHhhh
Confidence            888888888776666554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=1.1e-11  Score=80.63  Aligned_cols=98  Identities=13%  Similarity=0.010  Sum_probs=84.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------CCcccHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------SDSENSVLYANRAHV   80 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~   80 (119)
                      .+++...+.++..++|..+..+...|.+++..|  ++++|+..|++++.+.|.            ..|..+.+++++|.+
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (213)
T 1hh8_A           53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM  130 (213)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence            456788899999999999999999999999999  999999999999998332            123455999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417           81 NLLLGNYRRALTDTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      +..+|++++|+..++++++++|++.......+
T Consensus       131 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  162 (213)
T 1hh8_A          131 YAKKEEWKKAEEQLALATSMKSEPRHSKIDKA  162 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence            99999999999999999999998755554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=6.6e-12  Score=84.21  Aligned_cols=96  Identities=13%  Similarity=0.130  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+.++...+|..+..+...|..++..|  ++++|+..|++++.+    +|.++.++.++|...+..+++++|+..
T Consensus        91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG--NFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT--CHHHHHHHHGGGCCS----SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666666666666666777766666  677777777666666    666666666666333334467777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|++..+++.+|.++
T Consensus       165 ~~~a~~~~p~~~~~~~~~~~~~  186 (272)
T 3u4t_A          165 FVKVLELKPNIYIGYLWRARAN  186 (272)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHH
Confidence            7777777776666666666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.33  E-value=4.5e-12  Score=86.72  Aligned_cols=97  Identities=18%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             ChhhHHHHHHHHHhc---------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALK---------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL   83 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~   83 (119)
                      .+++...+.++..+.         |..+..+...|..+...|  ++++|+..|++++.+    .|.++.++.++|.++..
T Consensus       209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~  282 (330)
T 3hym_B          209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK--KYAEALDYHRQALVL----IPQNASTYSAIGYIHSL  282 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh----CccchHHHHHHHHHHHH
Confidence            345667777777765         666789999999999999  899999999999999    99999999999999999


Q ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           84 LGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +|++++|+..++++++++|+++.++..+|.++
T Consensus       283 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999887

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.33  E-value=1.3e-11  Score=80.17  Aligned_cols=98  Identities=9%  Similarity=0.031  Sum_probs=80.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-cCHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-GNYRRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~~~~~A~   91 (119)
                      .+++...+.++...+|..+..+...|..+...|  ++++|+..|.+++..    .|.++.++.++|.++... |++++|+
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~   97 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLK--VNDKAQESFRQALSI----KPDSAEINNNYGWFLCGRLNRPAESM   97 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCcHHHHH
Confidence            345677777888888888888888888888888  788888888888888    888888888888888888 8888888


Q ss_pred             HHHHHHHH--hCCCcHHHHHHHHhccc
Q 033417           92 TDTEEALK--LCPTNVKVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~--l~p~~~~a~~~~a~~~~  116 (119)
                      ..++++++  .+|.+..+++.+|.++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (225)
T 2vq2_A           98 AYFDKALADPTYPTPYIANLNKGICSA  124 (225)
T ss_dssp             HHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence            88888888  66677788888887764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.32  E-value=5.4e-12  Score=91.85  Aligned_cols=85  Identities=24%  Similarity=0.471  Sum_probs=78.7

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+..+..+...|..+++.|  +|++|+..|++++..    +|.++.++.++|.|+..+|++++|+..|+++++++|+++.
T Consensus        21 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~   94 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAK--NFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK   94 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH
Confidence            3456899999999999999  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 033417          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      +++.+|.++..
T Consensus        95 ~~~~la~~~~~  105 (537)
T 3fp2_A           95 ALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.32  E-value=1.1e-11  Score=78.92  Aligned_cols=90  Identities=12%  Similarity=0.093  Sum_probs=82.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHH-HHHhchHhH--HHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNE-YVKKGKKHY--YDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+++...+.++..++|.++..+...|.. ++..|  ++  ++|+..|.+++..    +|.++.+++++|.++..+|++++
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~--~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~  133 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYYQAS--QHMTAQTRAMIDKALAL----DSNEITALMLLASDAFMQANYAQ  133 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcccHHH
Confidence            4567888999999999999999999999 77888  88  9999999999999    99999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHH
Q 033417           90 ALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~  108 (119)
                      |+..++++++++|++....
T Consensus       134 A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          134 AIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHhhCCCCccHH
Confidence            9999999999999876544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.32  E-value=5e-12  Score=86.97  Aligned_cols=86  Identities=15%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|+++..+.++|.+++..|  ++++|+..|++++.+    +|.++.+++++|.++..+|++++|+.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~   93 (281)
T 2c2l_A           20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA   93 (281)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            456888999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCc
Q 033417           93 DTEEALKLCPTN  104 (119)
Q Consensus        93 ~~~~al~l~p~~  104 (119)
                      .++++++++|++
T Consensus        94 ~~~~al~l~p~~  105 (281)
T 2c2l_A           94 NLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCccc
Confidence            999999999865

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.31  E-value=4.1e-12  Score=81.25  Aligned_cols=66  Identities=17%  Similarity=0.142  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY----------RRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .|++|+..+++++++    +|.++.+|++.|.++..++++          ++|+..|+++|+++|++..+|+.+|.+|..
T Consensus        17 ~feeA~~~~~~Ai~l----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            799999999999999    999999999999999999875          599999999999999999999999999863

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.31  E-value=2.2e-11  Score=83.89  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=86.3

Q ss_pred             ChhhHHHHHHHHHhcHHHH----HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH
Q 033417           13 TESEKADLDAIAALKESAA----IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      .+++...++++...+|++.    ..+...|.++...|  ++++|+..|+++++.    +|+++.++.++|.++..+|+++
T Consensus       250 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~  323 (359)
T 3ieg_A          250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE--KPVEAIRICSEVLQM----EPDNVNALKDRAEAYLIEEMYD  323 (359)
T ss_dssp             HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHH
Confidence            3567777888888877755    44667899999999  899999999999999    9999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +|+..++++++++|++..++..++.++
T Consensus       324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          324 EAIQDYEAAQEHNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            999999999999999999998887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.31  E-value=3.5e-11  Score=88.81  Aligned_cols=99  Identities=19%  Similarity=0.193  Sum_probs=89.8

Q ss_pred             ChhhHHHHHHHHHh------cHHH-HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           13 TESEKADLDAIAAL------KESA-AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~------~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      .+++.+.++++..+      +|+. +..+...|..+.+.|  ++++|+..|++++++    .|+++.++..+|.++...|
T Consensus       491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK--MYDAAIDALNQGLLL----STNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhC
Confidence            45677788888777      4443 789999999999999  999999999999999    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           86 NYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+..++++++++|+++.++..++.+|..
T Consensus       565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          565 IPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            99999999999999999999999999998864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.8e-11  Score=88.35  Aligned_cols=82  Identities=27%  Similarity=0.503  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +.+..+...|..+++.|  +|++|+..|++++..    +| ++.++.++|.++..+|++++|+..++++++++|+++.++
T Consensus         4 ~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   76 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNK--KYDDAIKYYNWALEL----KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL   76 (514)
T ss_dssp             HHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             hhHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhc----Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence            45788888899999888  899999999999888    77 578888889999999999999999999999999888888


Q ss_pred             HHHHhcccC
Q 033417          109 ILCSGSHPN  117 (119)
Q Consensus       109 ~~~a~~~~~  117 (119)
                      +.+|.++..
T Consensus        77 ~~l~~~~~~   85 (514)
T 2gw1_A           77 LRRASANEG   85 (514)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.30  E-value=2.2e-11  Score=83.88  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=87.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|+++..+...|.+++..|  ++++|+..|.+++.+    .|.++.++..+|.++...|++++|+.
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~   92 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDEAED   92 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHHHHH
Confidence            456788899999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCC---CcHHHHHHHH
Q 033417           93 DTEEALKLCP---TNVKVVILCS  112 (119)
Q Consensus        93 ~~~~al~l~p---~~~~a~~~~a  112 (119)
                      .++++++++|   +++.++..++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           93 DFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcccChHHHHHHHH
Confidence            9999999999   8888888774

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.29  E-value=1.9e-11  Score=89.00  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|+++..+...|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+.
T Consensus       292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~  365 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ--DYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTESEA  365 (537)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            567888888888999999999999999999988  899999999999999    88888999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|+++.+++.+|.++..
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~  390 (537)
T 3fp2_A          366 FFNETKLKFPTLPEVPTFFAEILTD  390 (537)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999887653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.29  E-value=1.5e-11  Score=84.76  Aligned_cols=101  Identities=13%  Similarity=-0.093  Sum_probs=76.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---------------------------   65 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------   65 (119)
                      .+++...+.++...+|+++.++..+|..+...|  ++++|+..|++++...|.                           
T Consensus       133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~  210 (287)
T 3qou_A          133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALN--RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQ  210 (287)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC--CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHH
Confidence            346677788888888888888888888888887  788776665554333211                           


Q ss_pred             ---CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHhcc
Q 033417           66 ---SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN--VKVVILCSGSH  115 (119)
Q Consensus        66 ---~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~  115 (119)
                         .+|+++.+++++|.++...|++++|+..+.++++.+|++  ..++..+|.++
T Consensus       211 al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          211 QVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence               167788888888888888888888888888888888877  77777777665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.29  E-value=2.3e-11  Score=84.08  Aligned_cols=91  Identities=11%  Similarity=0.045  Sum_probs=83.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH-HH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR-AL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~-A~   91 (119)
                      .+++...++++...+|+++..+..+|.++.+.|  ++++|+..|++++.+    +|+++.++.++|.++..+|++.+ +.
T Consensus       182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~~al~~----~p~~~~~l~~l~~~~~~~g~~~eaa~  255 (291)
T 3mkr_A          182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG--RWEAAEGVLQEALDK----DSGHPETLINLVVLSQHLGKPPEVTN  255 (291)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            467788899999999999999999999999999  899999999999999    99999999999999999999987 56


Q ss_pred             HHHHHHHHhCCCcHHHHH
Q 033417           92 TDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~  109 (119)
                      ..++++++++|+++.+.-
T Consensus       256 ~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          256 RYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHhCCCChHHHH
Confidence            788999999999987653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.29  E-value=1.1e-12  Score=96.58  Aligned_cols=84  Identities=31%  Similarity=0.395  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ++.+..+...|..++..|  +|++|+..|++++++    +|.++.++.++|.++..+|++++|+..++++++++|+++.+
T Consensus         3 ~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   76 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   76 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence            556778889999999999  999999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccC
Q 033417          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      ++.+|.+|..
T Consensus        77 ~~~lg~~~~~   86 (477)
T 1wao_1           77 YYRRAASNMA   86 (477)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.28  E-value=3.3e-11  Score=79.95  Aligned_cols=83  Identities=12%  Similarity=0.110  Sum_probs=72.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---H
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK---V  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~---a  107 (119)
                      +..++..|..++..|  +|++|+..|++++...|. .|....+++.+|.+++.+|++++|+..|+++++++|+++.   +
T Consensus         4 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a   80 (225)
T 2yhc_A            4 PNEIYATAQQKLQDG--NWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV   80 (225)
T ss_dssp             HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence            567899999999999  999999999999998322 2333578999999999999999999999999999998864   8


Q ss_pred             HHHHHhccc
Q 033417          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      ++.+|.++.
T Consensus        81 ~~~~g~~~~   89 (225)
T 2yhc_A           81 MYMRGLTNM   89 (225)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.27  E-value=4.8e-12  Score=76.04  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+..|++++++.+. +|.++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.++..
T Consensus         5 ~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   73 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN   73 (117)
T ss_dssp             --CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            899999999999998211 288899999999999999999999999999999999999999999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=5.2e-11  Score=89.51  Aligned_cols=100  Identities=11%  Similarity=-0.033  Sum_probs=92.2

Q ss_pred             CCCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHh----------HHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417           10 EPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH----------YYDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .+.++++++..+++..++|++..+|..+|.++...|  +          +++++..+++++..    +|.+..+|.+|+.
T Consensus        42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~--~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w  115 (567)
T 1dce_A           42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCW  115 (567)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcc--cccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence            345778899999999999999999999999999988  6          99999999999999    9999999999999


Q ss_pred             HHHHhc--CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           80 VNLLLG--NYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        80 ~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +..+++  ++++++..|+++++++|.|..+|..++.++
T Consensus       116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l  153 (567)
T 1dce_A          116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  153 (567)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence            999999  779999999999999999999999988764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.26  E-value=3.9e-11  Score=76.74  Aligned_cols=102  Identities=12%  Similarity=-0.050  Sum_probs=82.2

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---------------------------   65 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------   65 (119)
                      .+++...++++...+|+++.++...|..+...|  ++++|+..|++++...|.                           
T Consensus        22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~   99 (176)
T 2r5s_A           22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETK--QFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQ   99 (176)
T ss_dssp             HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--CHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            356777788888889999999999999999988  888888777665544220                           


Q ss_pred             ---CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHhccc
Q 033417           66 ---SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN--VKVVILCSGSHP  116 (119)
Q Consensus        66 ---~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~~  116 (119)
                         .+|+++.+++++|.++...|++++|+..++++++++|++  ..+++.+|.++.
T Consensus       100 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A          100 ELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence               167888899999999999999999999999999999876  568888887664

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.26  E-value=1.5e-10  Score=68.71  Aligned_cols=80  Identities=18%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      +...+..|..+++.+  +|..|+..|.+|+...+..   .+..+.++.++|.|++++|++++|+..++++++++|++..+
T Consensus         5 a~dc~~lG~~~~~~~--~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAYTEA--DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcc--chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            456789999999999  9999999999999873221   34678899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 033417          108 VILCS  112 (119)
Q Consensus       108 ~~~~a  112 (119)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            87776

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.25  E-value=5e-11  Score=82.04  Aligned_cols=102  Identities=18%  Similarity=0.100  Sum_probs=82.2

Q ss_pred             ChhhHHHHHHHHHhcHHH------HHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccCCC--cccHHHHHHHHHHHHH
Q 033417           13 TESEKADLDAIAALKESA------AIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLL   83 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~   83 (119)
                      .++++..++++..+.+..      +..+.+.|..+... |  ++++|+..|++++.+.|...  +....++.++|.++..
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  170 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            456777788888777653      67899999999996 9  89999999999999933211  0125689999999999


Q ss_pred             hcCHHHHHHHHHHHHHhCCCcHH-------HHHHHHhccc
Q 033417           84 LGNYRRALTDTEEALKLCPTNVK-------VVILCSGSHP  116 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~-------a~~~~a~~~~  116 (119)
                      +|++++|+..|++++++.|++..       +++++|.++.
T Consensus       171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  210 (292)
T 1qqe_A          171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL  210 (292)
T ss_dssp             TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999987643       5778887764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.24  E-value=8.5e-11  Score=83.91  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++...+|.++..+...|..++..|  ++++|+..|.+++..    +|.++.++..+|.++..+|++++|+.
T Consensus        42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~  115 (450)
T 2y4t_A           42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIQL----KMDFTAARLQRGHLLLKQGKLDEAED  115 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            356778899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcH---HHHHHHHh
Q 033417           93 DTEEALKLCPTNV---KVVILCSG  113 (119)
Q Consensus        93 ~~~~al~l~p~~~---~a~~~~a~  113 (119)
                      .++++++++|++.   .++..++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A          116 DFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999998   77766643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=1.6e-10  Score=68.88  Aligned_cols=80  Identities=24%  Similarity=0.358  Sum_probs=74.5

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ..+...|..++..|  ++++|+..+.+++..    .|.++..+..+|.++...|++++|+..+++++++.|.++.+++.+
T Consensus         2 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   75 (136)
T 2fo7_A            2 EAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL   75 (136)
T ss_dssp             HHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHcC--cHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46788899999999  999999999999999    899999999999999999999999999999999999999999999


Q ss_pred             HhcccC
Q 033417          112 SGSHPN  117 (119)
Q Consensus       112 a~~~~~  117 (119)
                      |.++..
T Consensus        76 ~~~~~~   81 (136)
T 2fo7_A           76 GNAYYK   81 (136)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            987754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.22  E-value=1e-10  Score=86.33  Aligned_cols=97  Identities=12%  Similarity=0.040  Sum_probs=70.0

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++..++|.+...+...|..+.+.|  ++++|+..|++++..    .|.++.++..+|.++...|++++|+..
T Consensus       390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~  463 (597)
T 2xpi_A          390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG--EHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEY  463 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT----TTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            45556666666667777777777777777777  677777777777777    677777777777777777777777777


Q ss_pred             HHHHHHhCCCcHHHHHHHHhccc
Q 033417           94 TEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|.++.++..+|.++.
T Consensus       464 ~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          464 LQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777776653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.21  E-value=7.9e-11  Score=78.10  Aligned_cols=99  Identities=11%  Similarity=0.100  Sum_probs=83.2

Q ss_pred             ChhhHHHHHHHHHhcHHHH---HHHHHHhHHHHH------------------hchHhHHHHHHHHHHHHhcccCCCcccH
Q 033417           13 TESEKADLDAIAALKESAA---IELKEKGNEYVK------------------KGKKHYYDAIDCYTRAINQNVLSDSENS   71 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~------------------~g~~~~~~A~~~~~~al~~~~~~~~~~~   71 (119)
                      .++++..++++...+|++.   .++...|.+++.                  .|  ++++|+..|+++++.    .|+++
T Consensus        57 ~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~P~~~  130 (225)
T 2yhc_A           57 LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ--QARAAFSDFSKLVRG----YPNSQ  130 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCH--HHHHHHHHHHHHHTT----CTTCT
T ss_pred             HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH--HHHHHHHHHHHHHHH----CcCCh
Confidence            4567788889888888765   478899998886                  35  899999999999999    67665


Q ss_pred             HHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH---HHHHHHHhcccC
Q 033417           72 VLY-----------------ANRAHVNLLLGNYRRALTDTEEALKLCPTNV---KVVILCSGSHPN  117 (119)
Q Consensus        72 ~~~-----------------~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~a~~~~~  117 (119)
                      .+.                 ..+|.+++..|++.+|+..|+++++..|+++   ++++.+|.++..
T Consensus       131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence            433                 5789999999999999999999999999886   789999988754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.20  E-value=1.5e-10  Score=81.08  Aligned_cols=100  Identities=15%  Similarity=-0.020  Sum_probs=85.2

Q ss_pred             CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH----HHh-
Q 033417           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN----LLL-   84 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~----~~l-   84 (119)
                      +.+++++...+.+..++|++..+|..+|.++...| . ++++++..+..+|..    +|.+..+|..|+.++    ..+ 
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~-~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNR-NLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTS-CHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhcc
Confidence            45778888889999999999999999998888776 4 689999999999998    888999999998888    666 


Q ss_pred             --cCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           85 --GNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        85 --~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                        +++++++..+.++++.+|.|..+|+.++.++
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl  154 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLV  154 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence              7888999999999999999988888887654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=1.4e-10  Score=80.28  Aligned_cols=96  Identities=17%  Similarity=0.080  Sum_probs=76.8

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHH-------hchHhH-------HHHHHHHHHHHh-cccCCCcccHHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHY-------YDAIDCYTRAIN-QNVLSDSENSVLYANRA   78 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~a   78 (119)
                      +++...++++...+|.++..|...|..+..       .|  ++       ++|+..|++++. +    +|++..+|.+.|
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~----~p~~~~~~~~~~  106 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYA  106 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTT----TTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHh----CcccHHHHHHHH
Confidence            456677888888888888888888888764       35  54       888888888888 7    788888888888


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHhcc
Q 033417           79 HVNLLLGNYRRALTDTEEALKLCPTNVK-VVILCSGSH  115 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~-a~~~~a~~~  115 (119)
                      .++...|++++|+..|+++++++|.++. +|..+|.++
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A          107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence            8888888888888888888888888776 777777654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.18  E-value=1.9e-10  Score=76.73  Aligned_cols=103  Identities=17%  Similarity=0.058  Sum_probs=86.7

Q ss_pred             ChhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHH
Q 033417           13 TESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHV   80 (119)
Q Consensus        13 ~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~   80 (119)
                      .+++...++++..+        +|..+..+...|..++..|  ++++|+..|.+++.+..    ...|..+.++.++|.+
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            44566666666552        4889999999999999999  99999999999998731    1147788999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHhcccC
Q 033417           81 NLLLGNYRRALTDTEEALKL--------CPTNVKVVILCSGSHPN  117 (119)
Q Consensus        81 ~~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~~  117 (119)
                      +...|++++|+..+++++++        +|....+++.+|.++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  139 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN  139 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999998        57788999999988754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.17  E-value=1.1e-10  Score=78.00  Aligned_cols=101  Identities=18%  Similarity=0.099  Sum_probs=87.2

Q ss_pred             hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHH
Q 033417           14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVN   81 (119)
Q Consensus        14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~   81 (119)
                      +++...+.++..+        +|..+..+...|..+...|  ++++|+..|.+++.+..    ..+|....++.++|.++
T Consensus        60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  137 (283)
T 3edt_B           60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC  137 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            4566667776665        5889999999999999999  99999999999998731    12477889999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHhccc
Q 033417           82 LLLGNYRRALTDTEEALKL--------CPTNVKVVILCSGSHP  116 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~  116 (119)
                      ..+|++++|+..+++++++        +|....+++.+|.++.
T Consensus       138 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  180 (283)
T 3edt_B          138 QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL  180 (283)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999        7888899999998875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.16  E-value=2.4e-10  Score=79.06  Aligned_cols=95  Identities=8%  Similarity=0.024  Sum_probs=83.2

Q ss_pred             hhhHHHHHHHHH-hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH-HHHHHHHHHHHhcCHHHHH
Q 033417           14 ESEKADLDAIAA-LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~   91 (119)
                      +++...++++.. ++|+....|...|..+...|  ++++|...|++++++    .|.++. +|.+.|.++.+.|++++|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~A~  154 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHhcCHHHHH
Confidence            678888999998 79999999999999999998  899999999999999    888876 8999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhc
Q 033417           92 TDTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ..|+++++++|.+..+|...+..
T Consensus       155 ~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          155 MIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Confidence            99999998888887777665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=1.6e-10  Score=79.52  Aligned_cols=103  Identities=15%  Similarity=0.080  Sum_probs=81.3

Q ss_pred             ChhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-Cc-ccHHHHHHHHHHHHHh
Q 033417           13 TESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-DS-ENSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~a~~~~~l   84 (119)
                      .+++.+.+.++..+.      +..+..+.+.|.++...|  ++++|+..|++++.+.+.. ++ ..+.++.++|.++...
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~  130 (292)
T 1qqe_A           53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND  130 (292)
T ss_dssp             THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            345666677776664      234789999999999999  9999999999999993321 11 1257899999999995


Q ss_pred             -cCHHHHHHHHHHHHHhCCCc------HHHHHHHHhcccC
Q 033417           85 -GNYRRALTDTEEALKLCPTN------VKVVILCSGSHPN  117 (119)
Q Consensus        85 -~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~~  117 (119)
                       |++++|+..|++++++.|..      ..++..+|.++..
T Consensus       131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  170 (292)
T 1qqe_A          131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (292)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence             99999999999999998754      5678888887653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=6.8e-11  Score=85.35  Aligned_cols=96  Identities=16%  Similarity=0.062  Sum_probs=57.4

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHH------HHHHHHHHHHH---h
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSV------LYANRAHVNLL---L   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~a~~~~~---l   84 (119)
                      +++...+..+...+|..+..+...|..++..|  ++++|+..|.+++..    .|.++.      ++.++|.++..   .
T Consensus       355 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~  428 (514)
T 2gw1_A          355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKN--DFDKALKQYDLAIEL----ENKLDGIYVGIAPLVGKATLLTRNPTV  428 (514)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----hhccchHHHHHHHHHHHHHHHhhhhhc
Confidence            34555555555556666666666666666666  566666666666665    443322      56666666666   6


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           85 GNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |++++|+..++++++++|+++.+++.+|.++
T Consensus       429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  459 (514)
T 2gw1_A          429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMK  459 (514)
T ss_dssp             THHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            6666666666666666666666666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.15  E-value=2.5e-10  Score=78.56  Aligned_cols=92  Identities=10%  Similarity=0.011  Sum_probs=77.2

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH--
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE--   96 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~--   96 (119)
                      ....+...-|+....+...|..+...|  ++++|+..|++++..    +|+++.++.++|.++...|++++|+..+++  
T Consensus       105 l~~~l~~~lp~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          105 IRALLDXVLPREEELXAQQAMQLMQES--NYTDALPLLXDAWQL----SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHhCC--CHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            344444556888999999999999999  999999999999999    999999999999999999999987655544  


Q ss_pred             --------------------------------HHHhCCCcHHHHHHHHhccc
Q 033417           97 --------------------------------ALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        97 --------------------------------al~l~p~~~~a~~~~a~~~~  116 (119)
                                                      ++.++|+++.+++.+|.++.
T Consensus       179 ~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~  230 (287)
T 3qou_A          179 LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH  230 (287)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence                                            46667888888888877664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=2.9e-10  Score=81.82  Aligned_cols=101  Identities=17%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             ChhhHHHHHHHHHh---------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC----CCcccHHHHHHHHH
Q 033417           13 TESEKADLDAIAAL---------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL----SDSENSVLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~   79 (119)
                      .+++++.+.++..+         +|..+..+.+.|.+++..|  ++++|+..|++++.+.+.    ..+..+.++.++|.
T Consensus        67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~  144 (472)
T 4g1t_A           67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW  144 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence            34666777776665         4556778999999999999  899999999999987432    24567889999999


Q ss_pred             HHHHhc--CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           80 VNLLLG--NYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        80 ~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++.+|  +|++|+..|+++++++|+++.+++.+|.++
T Consensus       145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~  182 (472)
T 4g1t_A          145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS  182 (472)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            888765  699999999999999999999999888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.13  E-value=6.6e-10  Score=78.66  Aligned_cols=101  Identities=10%  Similarity=-0.040  Sum_probs=76.0

Q ss_pred             CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchH--------hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHH
Q 033417           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKK--------HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      +.+++++...+.+..++|++..+|..++.++...++.        .+++++..+..++..    +|.+..+|.+|+.+..
T Consensus        44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~wlL~  119 (331)
T 3dss_A           44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLS  119 (331)
T ss_dssp             CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHh
Confidence            4567777778888888888888888888777766520        167778888888887    7888888888888877


Q ss_pred             HhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           83 LLGN--YRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        83 ~l~~--~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++.  +++++..|.++++++|.|..+|..++.++
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7774  77888888888888888888877776553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=3.3e-10  Score=81.52  Aligned_cols=99  Identities=10%  Similarity=-0.013  Sum_probs=81.5

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhch--HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGK--KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      +++++.+.++..++|+++..+...|..+...+.  +++++|+..|++++.+    +|..+.++.++|.++...|++++|+
T Consensus       192 ~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~  267 (472)
T 4g1t_A          192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAI  267 (472)
T ss_dssp             CCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHH
Confidence            346667777777888888887777766654321  1678888999999998    9999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ..++++++++|+++.+++.+|.+|.
T Consensus       268 ~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          268 ELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHH
Confidence            9999999999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.12  E-value=6.3e-10  Score=79.28  Aligned_cols=100  Identities=10%  Similarity=-0.024  Sum_probs=93.4

Q ss_pred             CCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh-c-CHH
Q 033417           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-G-NYR   88 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~-~~~   88 (119)
                      +.++++++.++.+..++|++..+|..++.++...|+ .+++++..++.+|..    +|.+..+|..|+.+...+ + +++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCChH
Confidence            357889999999999999999999999999999883 499999999999999    999999999999999998 8 899


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++..+.++++++|.|..+|..++.++
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl  169 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLY  169 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999887654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.11  E-value=8.6e-10  Score=69.95  Aligned_cols=89  Identities=17%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      .+......++.+.+..++.|+++.++. +.+.++++..++..++.    + | ...++++++|..++++|+|.+|+.+++
T Consensus        20 ~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           20 KFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            334444445667899999999999865 23567999999999998    7 7 568999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHH
Q 033417           96 EALKLCPTNVKVVILC  111 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~  111 (119)
                      ++|+++|+|.++..-+
T Consensus        96 ~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           96 GLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHCTTCHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHH
Confidence            9999999999887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.10  E-value=5.4e-10  Score=66.47  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .|+..|.+++..    +|.++.+++++|.++...|++++|+..++++++++|+++.+++.+|.++.
T Consensus         3 ~a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            3 AITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CHHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            578899999999    99999999999999999999999999999999999999999999999875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.09  E-value=6e-10  Score=78.08  Aligned_cols=98  Identities=11%  Similarity=-0.069  Sum_probs=90.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHH----HHh---chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEY----VKK---GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~---g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      -++++..++.+...+|++..+|..++.++    ...   +  ++++++..+.++++.    +|.+..+|.+|+.+...+|
T Consensus        85 ~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~--~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~  158 (306)
T 3dra_A           85 LYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF--DPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFD  158 (306)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC--CTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhc
Confidence            46788899999999999999999999999    666   5  799999999999999    9999999999999999999


Q ss_pred             CHH--HHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           86 NYR--RALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~--~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++  +++..++++++.+|.|..+|..++.++.
T Consensus       159 ~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          159 LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF  191 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            998  9999999999999999999999887653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.09  E-value=1.6e-09  Score=76.67  Aligned_cols=99  Identities=12%  Similarity=0.036  Sum_probs=90.6

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC-HHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRALT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~   92 (119)
                      ++++..++.+...+|++..+|..++.++...++..+++++..+.++++.    +|.+..+|.+|+.+...+|. +++++.
T Consensus        91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A           91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            4677888999999999999999999999998721289999999999999    99999999999999999999 699999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++.++++.+|.|..+|..++.++.
T Consensus       167 ~~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          167 FTDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHH
Confidence            999999999999999999987653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.08  E-value=9.5e-10  Score=77.70  Aligned_cols=102  Identities=12%  Similarity=0.022  Sum_probs=77.5

Q ss_pred             hhhHHHHHHHHHh-------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHh
Q 033417           14 ESEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l   84 (119)
                      +++...+.++..+       .+..+..+...|.++...|  +|++|+..|.+++++.+..  .+....++.++|.++..+
T Consensus       160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            3455566666665       5666778888899999888  8999999999998873321  223346888889999999


Q ss_pred             cCHHHHHHHHHHHHH-----hC-CCcHHHHHHHHhcccC
Q 033417           85 GNYRRALTDTEEALK-----LC-PTNVKVVILCSGSHPN  117 (119)
Q Consensus        85 ~~~~~A~~~~~~al~-----l~-p~~~~a~~~~a~~~~~  117 (119)
                      |++++|+..++++++     .+ |....+++.+|.++..
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            999999999999888     35 7778888888887753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.08  E-value=3.9e-10  Score=84.75  Aligned_cols=100  Identities=12%  Similarity=0.042  Sum_probs=92.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc-CHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~   91 (119)
                      .+++++.++.+...+|+...+|..++.++.+.++.+|++++..+.+++++    +|.+..+|.+|+.+...+| .+++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~----d~~N~~aW~~R~~~l~~l~~~~~~el  164 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEEL  164 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh----ccccccHHHHHHHHHHHcCCChHHHH
Confidence            35788899999999999999999999999988722359999999999999    9999999999999999999 899999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++.++++.+|.+..+|+.++.++.
T Consensus       165 ~~~~~~I~~~p~n~saW~~r~~ll~  189 (567)
T 1dce_A          165 AFTDSLITRNFSNYSSWHYRSCLLP  189 (567)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCccHHHHHHHHHH
Confidence            9999999999999999999998764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.07  E-value=6.9e-11  Score=75.55  Aligned_cols=78  Identities=12%  Similarity=0.029  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ||+....+...|..++..|  ++++|+..|++++..    +|+++.+++++|.++...|++++|+..+++++.++| ++.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~   74 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQG--EHAQALNVIQTLSDE----LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS   74 (176)
T ss_dssp             ----CTTHHHHHHHHHHTT--CHHHHHHHHHTSCHH----HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred             CCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence            4555667889999999999  999999999999999    999999999999999999999999988888777777 655


Q ss_pred             HHHHH
Q 033417          107 VVILC  111 (119)
Q Consensus       107 a~~~~  111 (119)
                      .+..+
T Consensus        75 ~~~~~   79 (176)
T 2r5s_A           75 YKSLI   79 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=1.7e-10  Score=79.20  Aligned_cols=102  Identities=14%  Similarity=0.098  Sum_probs=81.6

Q ss_pred             hhhHHHHHHHHHhcH------HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CCCcccHHHHHHHHHHHHHh
Q 033417           14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l   84 (119)
                      ++++..+.++..+.+      ..+..+...|.+++..|  +|++|+..|.+++....   ...+....+++++|.++..+
T Consensus       132 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            456667777766422      13557999999999999  99999999999996421   22456677999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCc------HHHHHHHHhcccC
Q 033417           85 GNYRRALTDTEEALKLCPTN------VKVVILCSGSHPN  117 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~~  117 (119)
                      |+|++|+..+++++++.+..      ..+++.+|.+|..
T Consensus       210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  248 (293)
T 3u3w_A          210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999986543      7899999988753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.05  E-value=7.7e-10  Score=64.69  Aligned_cols=74  Identities=14%  Similarity=0.039  Sum_probs=65.8

Q ss_pred             cHHHHHHHHHHhHHHHHhch-HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           27 KESAAIELKEKGNEYVKKGK-KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +|+++..+...|..++..+. ....+|...+.+++.+    +|+++.+++.+|..++..|+|++|+..++++++.+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            46678889999999976551 0269999999999999    99999999999999999999999999999999999874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.03  E-value=1.4e-09  Score=73.56  Aligned_cols=101  Identities=19%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHH
Q 033417           14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVN   81 (119)
Q Consensus        14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~   81 (119)
                      +++...+.++..+        +|..+..+...|..+...|  ++++|+..|.+++.+..    ...|....++.++|.++
T Consensus        86 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  163 (311)
T 3nf1_A           86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC  163 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            4566666666665        5888999999999999999  99999999999998721    11477888999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHhccc
Q 033417           82 LLLGNYRRALTDTEEALKL--------CPTNVKVVILCSGSHP  116 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~  116 (119)
                      ...|++++|+..+++++++        +|....+++.+|.++.
T Consensus       164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  206 (311)
T 3nf1_A          164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL  206 (311)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998        7778889999998775

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=8.6e-10  Score=75.64  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=77.3

Q ss_pred             hhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc----cHHHHHHHHHHHHH
Q 033417           14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE----NSVLYANRAHVNLL   83 (119)
Q Consensus        14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~a~~~~~   83 (119)
                      +++...+.++..+.      ...+..+...|..++..|  +|++|+..|.+++.+... .|.    ...+++++|.++..
T Consensus       132 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh-cCccccchHHHHHhHHHHHHH
Confidence            35555666655432      223678999999999999  899999999999954211 233    23689999999999


Q ss_pred             hcCHHHHHHHHHHHHHhCCC------cHHHHHHHHhcccC
Q 033417           84 LGNYRRALTDTEEALKLCPT------NVKVVILCSGSHPN  117 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~------~~~a~~~~a~~~~~  117 (119)
                      +|+|++|+..+++++++.++      ...+++.+|.+|..
T Consensus       209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~  248 (293)
T 2qfc_A          209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999988643      27889999988753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.99  E-value=2.8e-09  Score=72.15  Aligned_cols=102  Identities=18%  Similarity=0.072  Sum_probs=86.2

Q ss_pred             hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHH
Q 033417           14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVN   81 (119)
Q Consensus        14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~   81 (119)
                      +++...+.++..+        +|..+..+...|..++..|  ++++|+..|.+++.+..    ...|....++.++|.++
T Consensus        44 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  121 (311)
T 3nf1_A           44 EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY  121 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            4566677777763        7889999999999999999  99999999999998731    11477788999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHhcccC
Q 033417           82 LLLGNYRRALTDTEEALKLC--------PTNVKVVILCSGSHPN  117 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l~--------p~~~~a~~~~a~~~~~  117 (119)
                      ..+|++++|+..+++++++.        |....+++.+|.++..
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  165 (311)
T 3nf1_A          122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN  165 (311)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999884        6678889999988754

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.97  E-value=2.5e-09  Score=73.96  Aligned_cols=101  Identities=11%  Similarity=0.066  Sum_probs=68.8

Q ss_pred             ChhhHHHHHHHHHhcH------HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC--cccHHHHHHHHHHHHHh
Q 033417           13 TESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l   84 (119)
                      .+++...+.++..+.+      ..+..+.+.|.++.. |  ++++|+..|++++.+.+...  +....++.++|.++..+
T Consensus        92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  168 (307)
T 2ifu_A           92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L--DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ  168 (307)
T ss_dssp             GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc
Confidence            3456666666666532      346777788888877 7  78888888888888732211  11256788888888888


Q ss_pred             cCHHHHHHHHHHHHHhCCCc------HHHHHHHHhccc
Q 033417           85 GNYRRALTDTEEALKLCPTN------VKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~  116 (119)
                      |+|++|+..|++++++.|++      ..+++.+|.+++
T Consensus       169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          169 QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence            88888888888888876543      235666666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.97  E-value=1.7e-10  Score=67.56  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=70.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCccc------HHHHHHHHHHHHHhcC
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~l~~   86 (119)
                      .+++...++++..++|.++..+...|.+++..|  +|++|+..|++++.+    +|++      ..+++++|.++..+|+
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLG--EYTQAIQMCQQGLRY----TSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            457888999999999999999999999999999  999999999999999    8887      8899999999999998


Q ss_pred             HHHHHHHHHH
Q 033417           87 YRRALTDTEE   96 (119)
Q Consensus        87 ~~~A~~~~~~   96 (119)
                      +++|+..+++
T Consensus        94 ~~~a~~~~~~  103 (111)
T 2l6j_A           94 VQIPVVEVDE  103 (111)
T ss_dssp             CCCCSSSSSS
T ss_pred             HhhhHhHHHH
Confidence            8888776554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=3.6e-09  Score=69.71  Aligned_cols=96  Identities=6%  Similarity=-0.121  Sum_probs=82.4

Q ss_pred             CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHH--
Q 033417           12 KTESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLL--   83 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~--   83 (119)
                      ..+++...+.+.  .++.++.++.++|..+..    .+  ++++|+..|+++++.    .+  ..+.+++++|.+|..  
T Consensus        68 ~~~~A~~~~~~A--~~~g~~~a~~~Lg~~y~~g~g~~~--d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~  139 (212)
T 3rjv_A           68 DYPQARQLAEKA--VEAGSKSGEIVLARVLVNRQAGAT--DVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGV  139 (212)
T ss_dssp             CHHHHHHHHHHH--HHTTCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHH--HHCCCHHHHHHHHHHHHcCCCCcc--CHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCC
Confidence            455677777776  445678899999999987    66  899999999999999    77  458999999999999  


Q ss_pred             --hcCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           84 --LGNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        84 --l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                        .+++++|+..+++++++ |.++.+++.+|.+|.
T Consensus       140 g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          140 HGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             SSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence              88999999999999998 778889999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.95  E-value=1.4e-08  Score=71.75  Aligned_cols=102  Identities=14%  Similarity=0.066  Sum_probs=80.2

Q ss_pred             ChhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-CC-cccHHHHHHHHHHHHHh
Q 033417           13 TESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SD-SENSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~-~~~~~~~~~~a~~~~~l   84 (119)
                      .+++.+.+.++..+.      +..+..+.+.|.++...|  ++++|+..|.+++.+.+. .+ |..+.++.++|.++..+
T Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (383)
T 3ulq_A          200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKL  277 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHC
Confidence            345667777777663      344578999999999999  999999999999995322 15 78899999999999999


Q ss_pred             cCHHHHHHHHHHHHHh-----CCCcHHHHHHHHhccc
Q 033417           85 GNYRRALTDTEEALKL-----CPTNVKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l-----~p~~~~a~~~~a~~~~  116 (119)
                      |++++|+..+++++++     +|.....+..+|.++.
T Consensus       278 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~  314 (383)
T 3ulq_A          278 GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL  314 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999999999999998     4444444455666554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.94  E-value=7.4e-09  Score=73.14  Aligned_cols=101  Identities=16%  Similarity=0.013  Sum_probs=74.2

Q ss_pred             hhHHHHHHHHHh-------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhc
Q 033417           15 SEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        15 ~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~   85 (119)
                      .+...+.++..+       .+..+..+...|.++...|  +|++|+..|.+++++.+..  .+....++.++|.++..+|
T Consensus       159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~  236 (378)
T 3q15_A          159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG  236 (378)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            444555555544       2346777888888888888  8888888888888873321  2234567888888888888


Q ss_pred             CHHHHHHHHHHHHH-----hCCCcHHHHHHHHhcccC
Q 033417           86 NYRRALTDTEEALK-----LCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        86 ~~~~A~~~~~~al~-----l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+..++++++     .+|....+++.+|.++..
T Consensus       237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            88888888888888     677778888888887653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.93  E-value=4.1e-09  Score=73.78  Aligned_cols=88  Identities=14%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+..+..+...|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++..+|++++|+..+++++++.|..
T Consensus       183 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            5667788999999999998  8999999999999883331  12234488999999999999999999999999887655


Q ss_pred             ------HHHHHHHHhccc
Q 033417          105 ------VKVVILCSGSHP  116 (119)
Q Consensus       105 ------~~a~~~~a~~~~  116 (119)
                            ..+++.+|.++.
T Consensus       261 ~~~~~~~~~~~~la~~~~  278 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYT  278 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHH
Confidence                  677888887764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.93  E-value=4.5e-09  Score=74.20  Aligned_cols=84  Identities=19%  Similarity=0.305  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS----VLYANRAHVNLLLGNYRRALTDTEEALKL--  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~a~~~~~l~~~~~A~~~~~~al~l--  100 (119)
                      ++..+..+...|..++..|  +|++|+..|++++.+    .|.++    .++..+|.++..+|++++|+..+++++++  
T Consensus        44 ~~~~~~~l~~~g~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  117 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAG--DCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK  117 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3667777888888888888  788888888888888    56554    57788888888888888888888888887  


Q ss_pred             ----CCCcHHHHHHHHhccc
Q 033417          101 ----CPTNVKVVILCSGSHP  116 (119)
Q Consensus       101 ----~p~~~~a~~~~a~~~~  116 (119)
                          +|....+++.+|.+|.
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A          118 SMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHH
T ss_pred             HccCchHHHHHHHHHHHHHH
Confidence                5667777888877664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.92  E-value=1e-08  Score=62.71  Aligned_cols=101  Identities=12%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             hhhHHHHHHHHHhcHHH------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhc
Q 033417           14 ESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~   85 (119)
                      +++...+.+...+.++.      +..+...|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++..+|
T Consensus        26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (164)
T 3ro3_A           26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ  103 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            45666677766665543      358899999999999  8999999999999883321  1223678999999999999


Q ss_pred             CHHHHHHHHHHHHHhCC------CcHHHHHHHHhccc
Q 033417           86 NYRRALTDTEEALKLCP------TNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p------~~~~a~~~~a~~~~  116 (119)
                      ++++|+..+++++++.+      ....++..+|.++.
T Consensus       104 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A          104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence            99999999999998732      22566777777654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.91  E-value=9.2e-10  Score=63.62  Aligned_cols=79  Identities=18%  Similarity=0.165  Sum_probs=70.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHH-HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           13 TESEKADLDAIAALKESAAI-ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .+++...++++...+|.++. .+...|.+++..|  ++++|+..|.+++.+    +|+++.++.+        +.+.+++
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~--------~~~~~a~   81 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG--DWQKALNNYQSAIEL----NPDSPALQAR--------KMVMDIL   81 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTSTHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHH--------HHHHHHH
Confidence            35678889999999999999 9999999999999  999999999999999    9999888754        7788999


Q ss_pred             HHHHHHHHhCCCcH
Q 033417           92 TDTEEALKLCPTNV  105 (119)
Q Consensus        92 ~~~~~al~l~p~~~  105 (119)
                      ..|++++.++|+++
T Consensus        82 ~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           82 NFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHCCTTHHHHCCS
T ss_pred             HHHHHHhccCcccc
Confidence            99999998888764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.91  E-value=1.8e-08  Score=67.90  Aligned_cols=77  Identities=16%  Similarity=0.035  Sum_probs=39.6

Q ss_pred             HHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Q 033417           29 SAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKL  100 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l  100 (119)
                      .++.++...|..+..    .+  ++++|+..|.++++.    .  ++.+++++|.++..    .+++++|+..++++++.
T Consensus        36 ~~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~  107 (273)
T 1ouv_A           36 KENSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDL----N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  107 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHC----C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence            334455555555555    55  555555555555554    2  44455555555555    55555555555555554


Q ss_pred             CCCcHHHHHHHHhcc
Q 033417          101 CPTNVKVVILCSGSH  115 (119)
Q Consensus       101 ~p~~~~a~~~~a~~~  115 (119)
                      +  ++.+++.+|.+|
T Consensus       108 ~--~~~a~~~lg~~~  120 (273)
T 1ouv_A          108 K--YAEGCASLGGIY  120 (273)
T ss_dssp             T--CHHHHHHHHHHH
T ss_pred             C--CccHHHHHHHHH
Confidence            2  455555555444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.91  E-value=3e-08  Score=72.43  Aligned_cols=93  Identities=5%  Similarity=-0.045  Sum_probs=78.0

Q ss_pred             hhhHHHHHHHHHh--------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHH
Q 033417           14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVN   81 (119)
Q Consensus        14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~   81 (119)
                      +++.+.+.+...+        +|..+..+.++|..+...|  +|++|+..|+++|.+    .+..+|+-...++|+|.+|
T Consensus       315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  392 (433)
T 3qww_A          315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ--DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY  392 (433)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            3445555555554        7889999999999999999  899999999999977    3445888999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHHh-----CCCcHHHH
Q 033417           82 LLLGNYRRALTDTEEALKL-----CPTNVKVV  108 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l-----~p~~~~a~  108 (119)
                      ..+|++++|+..+++|+++     .|+++..-
T Consensus       393 ~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          393 MGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999986     57776543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.90  E-value=5.4e-09  Score=74.48  Aligned_cols=100  Identities=11%  Similarity=-0.051  Sum_probs=92.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh-chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHH---
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR---   88 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~---   88 (119)
                      .++++..++.+...+|++..+|..++.++... +. ++++++..+.++++.    +|.+..+|..|+.+...+|.++   
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~-~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~  179 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRIS  179 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS-CCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccc
Confidence            45788999999999999999999999999987 31 589999999999999    9999999999999999999888   


Q ss_pred             -----HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           89 -----RALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 -----~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                           +++..++++++.+|.|..||..++.++..
T Consensus       180 ~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          180 EAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence                 99999999999999999999999987643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.89  E-value=2.6e-09  Score=62.49  Aligned_cols=51  Identities=24%  Similarity=0.107  Sum_probs=47.0

Q ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           67 DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+++.+++++|.+++.+|++++|+..++++++++|+++.+|+.+|.+|..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   53 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER   53 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999998753

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.89  E-value=4.4e-09  Score=74.29  Aligned_cols=101  Identities=14%  Similarity=0.100  Sum_probs=85.0

Q ss_pred             hhhHHHHHHHHHhcHHHH----HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCH
Q 033417           14 ESEKADLDAIAALKESAA----IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNY   87 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~   87 (119)
                      +++...++++..+.|++.    ..+...|..++..|  ++++|+..|.+++.+...  ..|....++.++|.++..+|++
T Consensus        65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  142 (411)
T 4a1s_A           65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF  142 (411)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence            456677788777777654    68999999999999  999999999999987322  1467788999999999999999


Q ss_pred             HHHHHHHHHHHHh------CCCcHHHHHHHHhccc
Q 033417           88 RRALTDTEEALKL------CPTNVKVVILCSGSHP  116 (119)
Q Consensus        88 ~~A~~~~~~al~l------~p~~~~a~~~~a~~~~  116 (119)
                      ++|+..+++++++      .|....+++.+|.+|.
T Consensus       143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            9999999999998      6677888999888764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=1e-08  Score=65.72  Aligned_cols=86  Identities=14%  Similarity=0.048  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC-
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL---CP-  102 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l---~p-  102 (119)
                      ..+..+...|..+...|  ++++|+..+.+++.+...  ..+....++.++|.++..+|++++|+..+++++++   .| 
T Consensus        24 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  101 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMD--RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE  101 (203)
T ss_dssp             THHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence            67899999999999999  999999999999995222  15677889999999999999999999999999998   34 


Q ss_pred             ---CcHHHHHHHHhccc
Q 033417          103 ---TNVKVVILCSGSHP  116 (119)
Q Consensus       103 ---~~~~a~~~~a~~~~  116 (119)
                         ....+++.+|.++.
T Consensus       102 ~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A          102 DPLAASANAYEVATVAL  118 (203)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence               33566777887664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.87  E-value=1.7e-08  Score=74.81  Aligned_cols=80  Identities=10%  Similarity=-0.008  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL--  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--  100 (119)
                      +|..+..+.++|..+...|  +|++|+..|.++|++    .+..+|+-...++++|.+|..+|+|++|+..+++|+.+  
T Consensus       347 Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQ--AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            6889999999999999999  899999999999987    34458889999999999999999999999999999986  


Q ss_pred             ---CCCcHHHH
Q 033417          101 ---CPTNVKVV  108 (119)
Q Consensus       101 ---~p~~~~a~  108 (119)
                         .|+++..-
T Consensus       425 ~~lG~~Hp~~~  435 (490)
T 3n71_A          425 VTHGPSHPITK  435 (490)
T ss_dssp             HHTCTTSHHHH
T ss_pred             HHhCCCChHHH
Confidence               46665443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.86  E-value=7.2e-08  Score=68.06  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=77.3

Q ss_pred             hhhHHHHHHHHHhc------HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC-CCcccHHHHHHHHHHHHHhcC
Q 033417           14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL-SDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      +++.+.+.++..+.      +..+..+.+.|.++...|  ++++|+..|.+++.+... .+|..+.++.++|.++..+|+
T Consensus       199 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~  276 (378)
T 3q15_A          199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ  276 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC
Confidence            45666666666542      346778999999999999  999999999999993211 178889999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-----CCcHHHHHHHHhcc
Q 033417           87 YRRALTDTEEALKLC-----PTNVKVVILCSGSH  115 (119)
Q Consensus        87 ~~~A~~~~~~al~l~-----p~~~~a~~~~a~~~  115 (119)
                      +++|+..+++++++.     |.....+..++..+
T Consensus       277 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly  310 (378)
T 3q15_A          277 TQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY  310 (378)
T ss_dssp             HHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999984     44444444444443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.86  E-value=5.7e-08  Score=65.38  Aligned_cols=92  Identities=12%  Similarity=0.063  Sum_probs=58.3

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----h
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----L   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l   84 (119)
                      .+++...+.++...+  ++.++...|..+..    .+  ++++|+..|+++++.    .  ++.+++++|.++..    .
T Consensus        58 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~~~~~~  127 (273)
T 1ouv_A           58 LKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDL----K--YAEGCASLGGIYHDGKVVT  127 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHc----C--CccHHHHHHHHHHcCCCcc
Confidence            345555566655554  46666667777666    66  677777777776665    3  56666666666666    6


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           85 GNYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++++|+..++++++++  ++.+++.+|.+|.
T Consensus       128 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A          128 RDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            66777777777666654  4566666666553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.84  E-value=1.1e-08  Score=71.53  Aligned_cols=101  Identities=11%  Similarity=0.117  Sum_probs=73.7

Q ss_pred             hhhHHHHHHHHHhcHH------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhc
Q 033417           14 ESEKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~   85 (119)
                      +++...+.+...+.++      .+..+...|..++..|  ++++|+..|.+++.+.+..  .+....++.++|.++...|
T Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  281 (406)
T 3sf4_A          204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ  281 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhC
Confidence            3455666666655443      3448888999999988  8999999999998883221  1122678888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCc------HHHHHHHHhccc
Q 033417           86 NYRRALTDTEEALKLCPTN------VKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~  116 (119)
                      ++++|+..+++++++.+..      ..++..+|.+|.
T Consensus       282 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  318 (406)
T 3sf4_A          282 DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT  318 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            9999999999988875433      667777777664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.84  E-value=1.1e-08  Score=62.50  Aligned_cols=87  Identities=14%  Similarity=0.165  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN-  104 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-  104 (119)
                      +..+..+...|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++..+|++++|+..+++++++.+.. 
T Consensus         6 ~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            345778999999999999  9999999999999883321  11223589999999999999999999999999875542 


Q ss_pred             -----HHHHHHHHhccc
Q 033417          105 -----VKVVILCSGSHP  116 (119)
Q Consensus       105 -----~~a~~~~a~~~~  116 (119)
                           ..+++.+|.++.
T Consensus        84 ~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence                 567788887764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.83  E-value=1.4e-08  Score=68.76  Aligned_cols=88  Identities=14%  Similarity=0.154  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+..+..+...|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++...|++++|+..+++++++.|..
T Consensus       179 ~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  256 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  256 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence            4566778889999999988  8999999999998873321  12234488889999999999999999999998886654


Q ss_pred             ------HHHHHHHHhccc
Q 033417          105 ------VKVVILCSGSHP  116 (119)
Q Consensus       105 ------~~a~~~~a~~~~  116 (119)
                            ..+++.+|.++.
T Consensus       257 ~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          257 KDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHH
Confidence                  667777777664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.83  E-value=3e-08  Score=68.54  Aligned_cols=90  Identities=13%  Similarity=0.046  Sum_probs=74.3

Q ss_pred             ChhhHHHHHHHHHhcHHH------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC--cccHHHHHHHHHHHHHh
Q 033417           13 TESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l   84 (119)
                      .++++..+.++..+.|..      +..+.+.|..+...|  +|++|+..|++++.+.+...  +.....+.++|.+++.+
T Consensus       131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~  208 (307)
T 2ifu_A          131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ--KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR  208 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence            456778888888877653      788999999999999  99999999999999833311  12245788999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCcH
Q 033417           85 GNYRRALTDTEEALKLCPTNV  105 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~  105 (119)
                      |++++|+..+++++ ++|.+.
T Consensus       209 g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          209 ADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             TCHHHHHHHHHHHT-TSTTST
T ss_pred             CCHHHHHHHHHHHh-CCCCCC
Confidence            99999999999999 999754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.83  E-value=2.8e-08  Score=73.17  Aligned_cols=95  Identities=17%  Similarity=0.074  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHH-------hchHhHH-------HHHHHHHHHHh-cccCCCcccHHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHYY-------DAIDCYTRAIN-QNVLSDSENSVLYANRAH   79 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~a~   79 (119)
                      .+...++++...+|.++..|...|..+..       .|  +++       +|+..|++++. +    .|+++.+|..+|.
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g--~~~~a~~~~~~A~~~~~~Al~~~----~p~~~~l~~~~~~  329 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYAD  329 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHTTTT----CSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc--chhhhhhhhHHHHHHHHHHHHHh----CcccHHHHHHHHH
Confidence            44567888888999999999999999886       57  776       89999999997 8    8999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcH-HHHHHHHhcc
Q 033417           80 VNLLLGNYRRALTDTEEALKLCPTNV-KVVILCSGSH  115 (119)
Q Consensus        80 ~~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~a~~~  115 (119)
                      .+...|++++|+..|+++++++|.++ .+|...|..+
T Consensus       330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  366 (530)
T 2ooe_A          330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  366 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH
Confidence            99999999999999999999999885 6888777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.83  E-value=1.8e-08  Score=68.26  Aligned_cols=102  Identities=12%  Similarity=0.132  Sum_probs=77.2

Q ss_pred             ChhhHHHHHHHHHhcHHH----HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcC
Q 033417           13 TESEKADLDAIAALKESA----AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      .+++...++++...+|.+    +..+...|..++..|  ++++|+..+.+++.+.+.  ..|..+.++..+|.++..+|+
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   98 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN   98 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence            356777888888888876    467778888888888  888888888888876322  134556788888888888888


Q ss_pred             HHHHHHHHHHHHHhCCCc------HHHHHHHHhccc
Q 033417           87 YRRALTDTEEALKLCPTN------VKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~  116 (119)
                      +++|+..+++++++.|..      ..+++.+|.++.
T Consensus        99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            888888888888886643      337777777654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.80  E-value=2.7e-08  Score=63.69  Aligned_cols=101  Identities=16%  Similarity=0.130  Sum_probs=78.7

Q ss_pred             hhhHHHHHHHHH------hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--Cc-ccHHHHHHHHHHHHHh
Q 033417           14 ESEKADLDAIAA------LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DS-ENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~-~~~~~~~~~a~~~~~l   84 (119)
                      +++...+.+...      ..+..+..+...|..+...|  ++++|+..+.+++.+....  ++ ....++.++|.++..+
T Consensus        43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  120 (203)
T 3gw4_A           43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG--NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF  120 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence            456667777766      56788999999999999999  9999999999999873321  12 4567899999999999


Q ss_pred             cCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHhccc
Q 033417           85 GNYRRALTDTEEALKLCP--TN----VKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p--~~----~~a~~~~a~~~~  116 (119)
                      |++++|+..+++++.+.+  .+    ..++..+|.++.
T Consensus       121 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  158 (203)
T 3gw4_A          121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ  158 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            999999999999997632  12    234566776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.79  E-value=2.7e-08  Score=65.48  Aligned_cols=89  Identities=17%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----CHHHHH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----NYRRAL   91 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----~~~~A~   91 (119)
                      +...+.+....  .++.++..+|..++..+  ++++|+..|+++++.      .++.+++++|.++.. +    ++++|+
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~   73 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSG--DYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQAR   73 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence            44455554443  46778888888888877  888888888888776      467777888888777 6    788888


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..++++++  +.++.+++.+|.+|..
T Consensus        74 ~~~~~A~~--~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           74 QLAEKAVE--AGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHH--TTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHH--CCCHHHHHHHHHHHHc
Confidence            88888754  4678888888877653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.78  E-value=3.7e-08  Score=55.42  Aligned_cols=67  Identities=24%  Similarity=0.330  Sum_probs=61.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      .+++...+.++...+|.++..+...|..++..|  ++++|+..|++++.+    +|.++.++.++|.++..+|
T Consensus        25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcC
Confidence            456778899999999999999999999999999  999999999999999    9999999999999988765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.78  E-value=6.6e-08  Score=70.50  Aligned_cols=87  Identities=14%  Similarity=0.102  Sum_probs=74.1

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL--  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--  100 (119)
                      +|..+..+.+.|..+...|  +|++|+..+.++|.+    .+..+|.-...++++|.+|..+|++++|+..+++|+++  
T Consensus       325 h~~~~~~~~~L~~~y~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLG--LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            7889999999999999999  899999999999977    34558889999999999999999999999999999986  


Q ss_pred             ---CCCcHH---HHHHHHhcc
Q 033417          101 ---CPTNVK---VVILCSGSH  115 (119)
Q Consensus       101 ---~p~~~~---a~~~~a~~~  115 (119)
                         .|+++.   ++..++.+.
T Consensus       403 ~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          403 VTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHH
Confidence               466654   444455443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.77  E-value=5.4e-08  Score=66.63  Aligned_cols=85  Identities=12%  Similarity=0.004  Sum_probs=68.9

Q ss_pred             hhhHHHHHHHHH-------hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHh
Q 033417           14 ESEKADLDAIAA-------LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l   84 (119)
                      +++...+.++..       ..+..+..+.+.|.+++..|  +|++|+..+.+++++.+..  .+..+.+++++|.++..+
T Consensus       172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~--~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS--RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            445555666552       34667789999999999999  9999999999999984321  233488999999999999


Q ss_pred             c-CHHHHHHHHHHHHHh
Q 033417           85 G-NYRRALTDTEEALKL  100 (119)
Q Consensus        85 ~-~~~~A~~~~~~al~l  100 (119)
                      | .+++|+..+++++.+
T Consensus       250 g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          250 EYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             TCCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHH
Confidence            9 479999999999986

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.74  E-value=1.2e-08  Score=70.81  Aligned_cols=75  Identities=16%  Similarity=-0.001  Sum_probs=56.0

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC--cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--SE-NSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ..+.+.+|..+...|  ++++|+..|++++.-    .  |. .+.+.+++|.|+.++|+.++|...+++++..+|+ ..+
T Consensus       171 ~~a~~~LG~al~~LG--~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          171 GAAGVAHGVAAANLA--LFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence            446777788888877  788888888887754    2  44 5567788888888888888888888888888887 766


Q ss_pred             HHHHH
Q 033417          108 VILCS  112 (119)
Q Consensus       108 ~~~~a  112 (119)
                      ...+.
T Consensus       244 ~~aL~  248 (282)
T 4f3v_A          244 AAALK  248 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.74  E-value=2e-07  Score=63.78  Aligned_cols=85  Identities=16%  Similarity=0.007  Sum_probs=66.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCcH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRALTDTEEAL---KLCPTNV  105 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al---~l~p~~~  105 (119)
                      ...+...|..+...|  ++++|+..|.+++.+.+....  ....+++++|.++..+|++++|+..+++++   +..|++.
T Consensus       115 ~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            344566788888888  899999999999987433211  226689999999999999999999999999   4456543


Q ss_pred             ----HHHHHHHhcccC
Q 033417          106 ----KVVILCSGSHPN  117 (119)
Q Consensus       106 ----~a~~~~a~~~~~  117 (119)
                          .+++++|.+|..
T Consensus       193 ~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHH
Confidence                688999988753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=3.9e-07  Score=63.16  Aligned_cols=98  Identities=12%  Similarity=-0.026  Sum_probs=82.1

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc-c-HHHHHHHHHHHHHhcCHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE-N-SVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~~a~~~~~l~~~~~A   90 (119)
                      -+++.+.++.+....|.+. ..+..|..+++.+  +|++|+..++.++..    .+. . ..+++++|.++..+|++++|
T Consensus       118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~--r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eA  190 (282)
T 4f3v_A          118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAE--RWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEA  190 (282)
T ss_dssp             HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT--CHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcC--CHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHH
Confidence            3456677777777789888 9999999999999  999999999988776    322 2 46899999999999999999


Q ss_pred             HHHHHHHHHhC--CC-cHHHHHHHHhcccC
Q 033417           91 LTDTEEALKLC--PT-NVKVVILCSGSHPN  117 (119)
Q Consensus        91 ~~~~~~al~l~--p~-~~~a~~~~a~~~~~  117 (119)
                      +..|++++.-.  |. .+.+++.+|.++..
T Consensus       191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~  220 (282)
T 4f3v_A          191 ERRLTEANDSPAGEACARAIAWYLAMARRS  220 (282)
T ss_dssp             HHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence            99999998644  66 77899999988753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.63  E-value=2.3e-07  Score=68.30  Aligned_cols=85  Identities=9%  Similarity=-0.016  Sum_probs=76.7

Q ss_pred             HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ++.....+|.+...|...+.. .+.|  ++++|...|++++..    .|.++.+|...+....+.|++++|...|++++.
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~--~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~   74 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQ--PIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM   74 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSS--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            456677899999999999984 6777  899999999999999    999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHH
Q 033417          100 LCPTNVKVVILCS  112 (119)
Q Consensus       100 l~p~~~~a~~~~a  112 (119)
                      ..| ++..|+..+
T Consensus        75 ~~p-~~~lw~~~~   86 (530)
T 2ooe_A           75 KVL-HIDLWKCYL   86 (530)
T ss_dssp             TCC-CHHHHHHHH
T ss_pred             cCC-ChHHHHHHH
Confidence            999 677776655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.63  E-value=4e-07  Score=55.90  Aligned_cols=79  Identities=19%  Similarity=0.053  Sum_probs=66.9

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHH---HHHHHHHHHhcccCCC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYD---AIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~---A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ++.....-++.|+.+.+..  +...   +|..++..+..    . | ..-.+++.+|..++++|+|.+|+.+++.+|+++
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~--~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTR--YNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSS--SHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            4456788889999998877  5555   89999998877    5 5 567899999999999999999999999999999


Q ss_pred             CCcHHHHHHH
Q 033417          102 PTNVKVVILC  111 (119)
Q Consensus       102 p~~~~a~~~~  111 (119)
                      |+|.+|.--+
T Consensus       105 P~n~QA~~Lk  114 (126)
T 1nzn_A          105 PQNNQAKELE  114 (126)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9998887544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.56  E-value=7.3e-07  Score=62.37  Aligned_cols=99  Identities=9%  Similarity=0.068  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHhcHHH------HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC----CcccHHHHHHHHHHHHHh
Q 033417           15 SEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLL   84 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l   84 (119)
                      ++...+.+...+.|..      +..+...|..++..|  ++++|+..|++++.+.+..    .|....++.++|.++...
T Consensus        71 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  148 (373)
T 1hz4_A           71 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW  148 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence            3445555555544332      344677888888888  8888888888888773221    144566778888888888


Q ss_pred             cCHHHHHHHHHHHHHhCCC-----cHHHHHHHHhcc
Q 033417           85 GNYRRALTDTEEALKLCPT-----NVKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~-----~~~a~~~~a~~~  115 (119)
                      |++++|+..+++++.+.|.     ...++..+|.++
T Consensus       149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  184 (373)
T 1hz4_A          149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS  184 (373)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence            9999999988888888764     245666666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.50  E-value=4.1e-06  Score=52.35  Aligned_cols=99  Identities=12%  Similarity=-0.013  Sum_probs=77.0

Q ss_pred             CCCCChhhHHHHHHHHHhc---HHHHHHHHHHhHHHHHhch-HhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHH
Q 033417            9 SEPKTESEKADLDAIAALK---ESAAIELKEKGNEYVKKGK-KHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL   83 (119)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~   83 (119)
                      .++.+++.+..++..-...   .-..+.-++.++++.++.. .+-..+|..++..+..    .| ..-++++.+|..+++
T Consensus        14 ~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~----~~~~~RdcLYyLAvg~yk   89 (144)
T 1y8m_A           14 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK   89 (144)
T ss_dssp             GCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----CCSTHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CccchhHHHHHHHHHHHH
Confidence            4556666666666555433   3357788899999988762 2346789999998887    66 456888999999999


Q ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           84 LGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +|+|.+|..+++.+|+++|+|.++.--+
T Consensus        90 l~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           90 LGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            9999999999999999999998876543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.49  E-value=6.3e-06  Score=50.91  Aligned_cols=99  Identities=12%  Similarity=-0.014  Sum_probs=76.6

Q ss_pred             CCCCChhhHHHHHHHHHhc--H-HHHHHHHHHhHHHHHhch-HhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHH
Q 033417            9 SEPKTESEKADLDAIAALK--E-SAAIELKEKGNEYVKKGK-KHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL   83 (119)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~   83 (119)
                      .++.+++....++..-...  + -.+..-++.++++.+... .+...+|..++..+..    .| ..-.+++.+|..+++
T Consensus        15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----~~~~~Rd~LYyLAvg~yk   90 (134)
T 3o48_A           15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK   90 (134)
T ss_dssp             GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHHH
Confidence            4556666666666554332  1 146778888988887763 2446899999999888    77 457889999999999


Q ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           84 LGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +|+|.+|..+++.+|+++|+|.+|.--+
T Consensus        91 lgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           91 LGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            9999999999999999999999887544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.49  E-value=8.5e-07  Score=64.68  Aligned_cols=91  Identities=14%  Similarity=-0.035  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcC
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGN   86 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~   86 (119)
                      ++...+.+....  .++.++...|..+..    .+  ++++|+..|+++++.    .  ++.+++++|.++..    .++
T Consensus       349 ~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~A~~~----~--~~~a~~~Lg~~y~~g~g~~~d  418 (490)
T 2xm6_A          349 KAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK--DEQQAAIWMRKAAEQ----G--LSAAQVQLGEIYYYGLGVERD  418 (490)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHhC----C--CHHHHHHHHHHHHcCCCCCCC
Confidence            444444444443  346667777777776    55  677777777777766    3  46677777777777    677


Q ss_pred             HHHHHHHHHHHHHhCC---CcHHHHHHHHhcc
Q 033417           87 YRRALTDTEEALKLCP---TNVKVVILCSGSH  115 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p---~~~~a~~~~a~~~  115 (119)
                      +++|+..|+++++.+|   +++.+.+.+|.++
T Consensus       419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~  450 (490)
T 2xm6_A          419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLT  450 (490)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence            7777777777777773   3777777776654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.49  E-value=1.4e-06  Score=50.64  Aligned_cols=65  Identities=14%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             CCCCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHH
Q 033417            9 SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYAN   76 (119)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   76 (119)
                      ....++++...++++..++|+++.++..+|..++..|  +|++|+..++++++..|. .|+-..+-..
T Consensus        21 ~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g--~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~   85 (93)
T 3bee_A           21 KQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF--RFQEAIDTWVLLLDSNDP-NLDRVTIIES   85 (93)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTCCCT-TCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCC-CccHHHHHHH
Confidence            3345788999999999999999999999999999999  999999999999999555 4444444333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.47  E-value=1.2e-06  Score=54.09  Aligned_cols=85  Identities=15%  Similarity=0.088  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCH
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNY   87 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~   87 (119)
                      +.+.+.+....  .++.+..++|..+..    .+  ++++|+..|+++.+.      .++.+.+++|.+|..    .+++
T Consensus        44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~--d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~  113 (138)
T 1klx_A           44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNE  113 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCH
Confidence            44444444433  345666666666665    44  666666666666655      345666666666666    6666


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417           88 RRALTDTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      ++|+..++++.+.  .++.+.+.++
T Consensus       114 ~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          114 KQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHh
Confidence            6666666666665  3455555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.45  E-value=1.9e-06  Score=61.83  Aligned_cols=83  Identities=17%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+|..+..+...+..++..|  ++++|+..+++++.+    +| +...|..+|.++...|++++|+..+.+|+.++|..
T Consensus       271 ~~~~~~a~~~~alal~~l~~g--d~d~A~~~l~rAl~L----n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKG--KTDESYQAINTGIDL----EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             ccCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhc----CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            346778888888998888888  999999999999999    76 46788899999999999999999999999999987


Q ss_pred             HHHHHHHHhc
Q 033417          105 VKVVILCSGS  114 (119)
Q Consensus       105 ~~a~~~~a~~  114 (119)
                      .--++....+
T Consensus       344 ~t~~~~~~l~  353 (372)
T 3ly7_A          344 NTLYWIENGI  353 (372)
T ss_dssp             HHHHHHHHSS
T ss_pred             ChHHHHhCce
Confidence            6444433433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.45  E-value=7.4e-07  Score=66.03  Aligned_cols=85  Identities=12%  Similarity=0.033  Sum_probs=68.4

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc----CCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV----LSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL------  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l------  100 (119)
                      +....+.+..+...|  +|++|+..|.+++++..    ..+|.-...+.++|.+|..+|+|++|+..++++|.+      
T Consensus       309 a~~~le~a~~~~~qg--~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          309 SKDTLEKIDKARSEG--LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            444556666677778  89999999999998732    237788899999999999999999999999999986      


Q ss_pred             --CCCcHHHHHHHHhcccC
Q 033417          101 --CPTNVKVVILCSGSHPN  117 (119)
Q Consensus       101 --~p~~~~a~~~~a~~~~~  117 (119)
                        +|+-...+.++|.+|..
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~  405 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWH  405 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence              34445677888888754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.44  E-value=5.6e-06  Score=50.97  Aligned_cols=91  Identities=8%  Similarity=-0.099  Sum_probs=75.4

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYR   88 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~   88 (119)
                      .+++...+.+........+  .  .|..+...+  .+++|+..|+++.+.      .++.+.+++|.+|..    .++++
T Consensus        11 ~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~--~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A           11 LKKAIQYYVKACELNEMFG--C--LSLVSNSQI--NKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHTTCTTH--H--HHHHTCTTS--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             HHHHHHHHHHHHcCCCHhh--h--HHHHHHcCC--CHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHH
Confidence            3456667777766654333  3  888888766  799999999999987      578999999999999    89999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+..++++.+.  .++.+++.+|.+|..
T Consensus        79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           79 KAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999999999987  689999999998753

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.38  E-value=2e-06  Score=59.88  Aligned_cols=84  Identities=15%  Similarity=0.051  Sum_probs=75.1

Q ss_pred             hhhHHHHHHHHHhcHH--HHHHHHHHhHHHHHh-----chHhHHHHHHHHHHHHhcccCCCccc-HHHHHHHHHHHHH-h
Q 033417           14 ESEKADLDAIAALKES--AAIELKEKGNEYVKK-----GKKHYYDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLL-L   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~-----g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~-l   84 (119)
                      +.+...++++..++|+  +..++.-.|..|...     |  +.++|..+|+++|++    +|.. ...++..|..+.. .
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG--d~ekA~~~ferAL~L----nP~~~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG--GMEKAHTAFEHLTRY----CSAHDPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC--CHHHHHHHHHHHHHH----CCTTCSHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC--CHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHhc
Confidence            3566778999999999  677999999999995     7  899999999999999    9964 8889999999888 5


Q ss_pred             cCHHHHHHHHHHHHHhCCC
Q 033417           85 GNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~  103 (119)
                      |+++++...+++++..+|.
T Consensus       254 gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          254 NNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TCHHHHHHHHHHHHHCCGG
T ss_pred             CCHHHHHHHHHHHHcCCCC
Confidence            9999999999999998876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.38  E-value=6.3e-07  Score=62.69  Aligned_cols=101  Identities=11%  Similarity=0.024  Sum_probs=75.0

Q ss_pred             hhhHHHHHHHHHhcHH-----HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcC
Q 033417           14 ESEKADLDAIAALKES-----AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~   86 (119)
                      +++...+.+.....|.     .+..+...|..++..|  ++++|+..+.+++.+.+....  ....++.++|.++...|+
T Consensus        31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~  108 (373)
T 1hz4_A           31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF  108 (373)
T ss_dssp             HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence            3455666665555432     3446888999999999  999999999999988433211  123457889999999999


Q ss_pred             HHHHHHHHHHHHHhC--------CCcHHHHHHHHhccc
Q 033417           87 YRRALTDTEEALKLC--------PTNVKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~--------p~~~~a~~~~a~~~~  116 (119)
                      +++|+..+++++.+.        |....++..+|.++.
T Consensus       109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A          109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            999999999999875        445667777887664

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.38  E-value=9.5e-07  Score=64.31  Aligned_cols=90  Identities=11%  Similarity=0.027  Sum_probs=72.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHH---HhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc----
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYV---KKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----   85 (119)
                      .+++...+.++.   |.++.++.++|..++   ..+  ++++|+..|+++++.      .++.+++++|.+|. .|    
T Consensus       233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~--d~~~A~~~~~~Aa~~------g~~~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELG--DVEQMMKYLDNGRAA------DQPRAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHH-HCSSSC
T ss_pred             HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHH-cCCCCC
Confidence            345666666654   788899999999843   445  899999999999876      47888899999887 56    


Q ss_pred             -CHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           86 -NYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        86 -~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                       ++.+|+..|+++.   |.++.+++.+|.+|..
T Consensus       301 ~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence             8999999999988   8899999999988754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.34  E-value=1.6e-06  Score=63.38  Aligned_cols=82  Identities=9%  Similarity=-0.065  Sum_probs=64.1

Q ss_pred             HHHhHHHHHhchHhHHHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Q 033417           35 KEKGNEYVKKGKKHYYDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL--------CP  102 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--------~p  102 (119)
                      .+.+......|  +|++|+..|++++++.    ...+|.-...+.++|.+|..+|+|++|+..++++|.+        +|
T Consensus       302 le~~~~~~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          302 IEEFRRAKHYK--SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHTTTS--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHhhhcc--CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            33334444456  8999999999999873    2236777889999999999999999999999999986        34


Q ss_pred             CcHHHHHHHHhcccCC
Q 033417          103 TNVKVVILCSGSHPNQ  118 (119)
Q Consensus       103 ~~~~a~~~~a~~~~~~  118 (119)
                      +-...+.++|.+|..+
T Consensus       380 ~~a~~l~nLa~~~~~q  395 (433)
T 3qww_A          380 NVASMWLKLGRLYMGL  395 (433)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            4556788888887543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.34  E-value=2.9e-06  Score=59.54  Aligned_cols=95  Identities=12%  Similarity=-0.054  Sum_probs=73.5

Q ss_pred             ChhhHHHHHHHHHhcH------HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHh
Q 033417           13 TESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l   84 (119)
                      .+.+.+.+.++...+|      +........|.+.+..|.+++.+|+..|+++.+.    .|+  .+..+++   +++.+
T Consensus       152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~  224 (310)
T 3mv2_B          152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQ  224 (310)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHc
Confidence            4567788888888888      4455555667667665544799999999999888    776  3445555   89999


Q ss_pred             cCHHHHHHHHHHHHHh----------CCCcHHHHHHHHhc
Q 033417           85 GNYRRALTDTEEALKL----------CPTNVKVVILCSGS  114 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l----------~p~~~~a~~~~a~~  114 (119)
                      |++++|...++.++++          +|+++.++.+++.+
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l  264 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL  264 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence            9999999999988877          58899999776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.28  E-value=4.4e-06  Score=60.90  Aligned_cols=84  Identities=13%  Similarity=0.020  Sum_probs=66.6

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc----cCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL-------  100 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-------  100 (119)
                      .........+...|  +|++|+..|++++++.    ...+|.-...+.++|.+|..+|+|++|+..+++++.+       
T Consensus       288 ~~ll~~ie~~~~~g--~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          288 QESLKKIEELKAHW--KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHhhc--cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            34445555666777  8999999999999873    2336777889999999999999999999999999976       


Q ss_pred             -CCCcHHHHHHHHhcccC
Q 033417          101 -CPTNVKVVILCSGSHPN  117 (119)
Q Consensus       101 -~p~~~~a~~~~a~~~~~  117 (119)
                       +|+-...++++|.+|..
T Consensus       366 ~Hp~~a~~l~nLa~~~~~  383 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLH  383 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHh
Confidence             34445677888887754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.27  E-value=1.3e-05  Score=58.41  Aligned_cols=75  Identities=11%  Similarity=-0.076  Sum_probs=35.8

Q ss_pred             HHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCC
Q 033417           31 AIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKLCP  102 (119)
Q Consensus        31 ~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p  102 (119)
                      +.++..+|..+..    .+  ++++|+..|.++++.      .++.+++++|.++..    .+++++|+..|+++++.  
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  144 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQ--DYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--  144 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence            4444555555554    44  455555555555443      234444445555444    44555555555554433  


Q ss_pred             CcHHHHHHHHhcc
Q 033417          103 TNVKVVILCSGSH  115 (119)
Q Consensus       103 ~~~~a~~~~a~~~  115 (119)
                      .++.+++.+|.+|
T Consensus       145 ~~~~a~~~Lg~~y  157 (490)
T 2xm6_A          145 GRDSGQQSMGDAY  157 (490)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            2444444444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.09  E-value=1.4e-05  Score=58.18  Aligned_cols=93  Identities=8%  Similarity=-0.021  Sum_probs=67.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHh----chHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH---HHhc
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKK----GKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN---LLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~---~~l~   85 (119)
                      .+++...+.+.....+..+..+...|..+...    +  ++++|+..|+++.       |.++.+++++|.++   ...+
T Consensus       195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa-------~g~~~a~~~Lg~~~~~~~~~~  265 (452)
T 3e4b_A          195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP--DEKTAQALLEKIA-------PGYPASWVSLAQLLYDFPELG  265 (452)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHG-------GGSTHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCCC
Confidence            34556666666667776777777788777554    4  7888888888875       35677788888873   3577


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           86 NYRRALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++|+..|+++++.  .++.+++.+|.+|.
T Consensus       266 d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          266 DVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            888888888888765  47888888887764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.05  E-value=1.2e-05  Score=56.38  Aligned_cols=79  Identities=18%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRALTDTEE   96 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      .++++....+.....+.-.|.++...|  ++++|++.+.++|..    +|  .+..++...+.+++++|+.+.|...+++
T Consensus        88 ~l~~l~~~~~~~~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           88 ELENLLKDKQNSPYELYLLATAQAILG--DLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             HHHHTTTTSCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHcC--CHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            344443332233455678999999999  999999999999998    75  8899999999999999999999999999


Q ss_pred             HHHhCCC
Q 033417           97 ALKLCPT  103 (119)
Q Consensus        97 al~l~p~  103 (119)
                      ..+.+|+
T Consensus       162 ~~~~~~d  168 (310)
T 3mv2_B          162 YTNAIED  168 (310)
T ss_dssp             HHHHSCH
T ss_pred             HHhcCcc
Confidence            9999993

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.05  E-value=4.9e-05  Score=48.63  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhccc---CC------------------CcccHHHHHHHHHHHHHhcCHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNV---LS------------------DSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~------------------~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+.+.-.|+.+|..+  +|..|...|+++|....   +.                  .+.+.++.+..+.|+.+++++++
T Consensus        63 ~~~l~~ladalf~~~--eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           63 YQLLVYHADSLFHDK--EYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            457889999999999  99999999999987632   11                  22344788999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           90 ALTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+...+.+ -..-..++....+|+.|-
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence            99986653 223367888888888764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.97  E-value=6e-05  Score=54.05  Aligned_cols=97  Identities=12%  Similarity=0.090  Sum_probs=70.3

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhch-----HhHHHHHHH-HH--HHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGK-----KHYYDAIDC-YT--RAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-----~~~~~A~~~-~~--~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      .+++..++++..++|+.+.++..++.+++-...     +....++.. +.  .++..    .|.++.++..++..+...|
T Consensus       216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~----~~~~a~~~~alal~~l~~g  291 (372)
T 3ly7_A          216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE----LNNLSIIYQIKAVSALVKG  291 (372)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG----GTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc----CCcCHHHHHHHHHHHHhCC
Confidence            567788899999999988888888887753220     001112211 11  12244    6888889988888888899


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           86 NYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++|+..+++++.++|+ ..+|..+|.++
T Consensus       292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~  320 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEMS-WLNYVLLGKVY  320 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence            999999999999999974 67777777765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.94  E-value=6.3e-05  Score=52.38  Aligned_cols=92  Identities=14%  Similarity=0.077  Sum_probs=71.6

Q ss_pred             HHHHhcHHHHHHHHHHhHHHHH---h--ch----HhHHHHHHHHHHHHhcccCCCcc--cHHHHHHHHHHHHHh-----c
Q 033417           22 AIAALKESAAIELKEKGNEYVK---K--GK----KHYYDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-----G   85 (119)
Q Consensus        22 ~~~~~~~~~~~~~~~~g~~~~~---~--g~----~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-----~   85 (119)
                      .+...+|+++..++=.|.....   .  |-    .....|...+++++++    +|.  +..+|..+|..|...     |
T Consensus       143 ~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gG  218 (301)
T 3u64_A          143 VLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGG  218 (301)
T ss_dssp             HHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred             HHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCC
Confidence            3444567777776655555432   1  10    1357888999999999    998  778999999999995     9


Q ss_pred             CHHHHHHHHHHHHHhCCCc-HHHHHHHHhcccC
Q 033417           86 NYRRALTDTEEALKLCPTN-VKVVILCSGSHPN  117 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~-~~a~~~~a~~~~~  117 (119)
                      +.++|..+|+++|+++|+. ..+++..|..+..
T Consensus       219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            9999999999999999975 9999888887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.86  E-value=7.1e-05  Score=52.99  Aligned_cols=85  Identities=8%  Similarity=-0.034  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHhcHH------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcC
Q 033417           15 SEKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      .+...+.......++      .+..+...|..++..|  +|.+|+..+.+++.....  ..+....++...|.++..+|+
T Consensus       113 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
T 4b4t_Q          113 DQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK--QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN  190 (434)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence            444444444443322      3667889999999999  899999999999876433  356778899999999999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 033417           87 YRRALTDTEEALKLC  101 (119)
Q Consensus        87 ~~~A~~~~~~al~l~  101 (119)
                      +.+|...+++++.+.
T Consensus       191 ~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          191 LAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.82  E-value=4.3e-05  Score=56.07  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------------------CCcccHHHHHHHHHHHHHhcCH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------------------SDSENSVLYANRAHVNLLLGNY   87 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~~~a~~~~~l~~~   87 (119)
                      ..+..+|.++++.|  +|++|++.|.++-....+                        ..|+.   ...+..+|.+.|++
T Consensus       149 ~n~~~LA~~L~~Lg--~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~  223 (449)
T 1b89_A          149 SNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYF  223 (449)
T ss_dssp             TCHHHHHHHHHTTT--CHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHhc--cHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCH
Confidence            35556666666666  566666666665222000                        03333   33466789999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           88 RRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++|+..+++++.++|.+...++.+|.+|.+
T Consensus       224 eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          224 EELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999987743

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.75  E-value=9.9e-05  Score=60.81  Aligned_cols=83  Identities=14%  Similarity=0.056  Sum_probs=57.8

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC---------------------CcccHHHHHHHHHHHHHhcCHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS---------------------DSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      ..|...|.++.+.|  ++++|++.+.+|....++.                     -..++..+...+..|...|.|++|
T Consensus      1222 ~ny~rLA~tLvkLg--e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A         1222 SNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred             hHHHHHHHHHHHhC--CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHH
Confidence            34555556666655  5666666666654441110                     012344566777888999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |..++++|.++|.+...+..+|.+|.
T Consensus      1300 I~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A         1300 ITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHHHHhccChhHhHHHHHHHHHHH
Confidence            99999999999999999988888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.67  E-value=0.00015  Score=59.76  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      .+.+..|.+.|..+...|  ++++|+..|.+         .+++..|.+.|.++.++|+|++|+..+.++++..++
T Consensus      1102 vn~p~vWsqLAKAql~~G--~~kEAIdsYiK---------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKG--MVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            345889999999999999  89999999955         367889999999999999999999999999988754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00013  Score=51.66  Aligned_cols=72  Identities=11%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC-------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD-------------SENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ...+.|..+.+.|  +|++|+..|.++++..+...             +....++.++|.+|...|++++|+..+.+++.
T Consensus         6 ~~l~~a~~l~~~~--~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            6 SKLEEARRLVNEK--QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHHHHHHT--CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4566788888888  89999999999999844321             11234688999999999999999999999998


Q ss_pred             hCCCcHH
Q 033417          100 LCPTNVK  106 (119)
Q Consensus       100 l~p~~~~  106 (119)
                      +.+...+
T Consensus        84 ~~~~~~~   90 (434)
T 4b4t_Q           84 YMMQFAK   90 (434)
T ss_dssp             HHHTSCH
T ss_pred             HHHHccc
Confidence            7665433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.52  E-value=0.0013  Score=41.46  Aligned_cols=62  Identities=6%  Similarity=-0.011  Sum_probs=53.0

Q ss_pred             hhhHHHHHHHHHhc-H-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417           14 ESEKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN   81 (119)
Q Consensus        14 ~~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~   81 (119)
                      .+.+..++.+...+ | ...+.++.+|..+++.|  +|++|...++++|++    +|++..+...+-.+-
T Consensus        52 ~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--~Y~~A~~y~~~lL~i----eP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           52 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence            36677888888888 8 67999999999999999  999999999999999    998887766655443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.45  E-value=0.00046  Score=44.13  Aligned_cols=67  Identities=13%  Similarity=0.081  Sum_probs=52.5

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSE------NSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...+.+....++..|  .|+.|+.....++.+... +|+      ...++...|.+++..++|..|...|+++|++
T Consensus        20 ~~~l~dqik~L~d~~--LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAG--LHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             -CCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            345677788888888  899999999998877211 121      2347788999999999999999999999875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.34  E-value=0.0012  Score=38.43  Aligned_cols=45  Identities=13%  Similarity=0.056  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      ..+..+...|.++++.|  +++.|+..+.+++.+    +|+++.+..|++.
T Consensus        44 ~~~~i~~~L~~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~n~~~   88 (104)
T 2v5f_A           44 DKVSVLDYLSYAVYQQG--DLDKALLLTKKLLEL----DPEHQRANGNLKY   88 (104)
T ss_dssp             CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHhhHHH
Confidence            46788999999999999  999999999999999    9999999888873

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.07  E-value=8.5e-05  Score=54.51  Aligned_cols=73  Identities=16%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..|..+|..+.+.|  ++++|+..|.+         ..++..|...+.+...+|++++|+.+++++++..|+ +.....
T Consensus        32 ~~vWs~La~A~l~~g--~~~eAIdsfik---------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~   99 (449)
T 1b89_A           32 PAVWSQLAKAQLQKG--MVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETE   99 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcC--CHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHH
Confidence            569999999999999  89999999954         245567888899999999999999999998875332 444444


Q ss_pred             HHhcc
Q 033417          111 CSGSH  115 (119)
Q Consensus       111 ~a~~~  115 (119)
                      ++.+|
T Consensus       100 Li~~Y  104 (449)
T 1b89_A          100 LIFAL  104 (449)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            44443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.0074  Score=47.02  Aligned_cols=62  Identities=16%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ....+..++.-+..+|  +|+-|+..-.+|+..    .|.+...|+.++.||..+|+|+.|+-...-+
T Consensus       336 ~~~LL~~Qa~FLl~K~--~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRG--DYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccC--cHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3456667777777777  999999999999999    9999999999999999999999999765544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.86  E-value=0.0066  Score=46.70  Aligned_cols=77  Identities=12%  Similarity=-0.146  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHH-HHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033417           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAI-DCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEE   96 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ..++++....|..+..|...+......|  +.++|. ..|.+|+..    +|.+..++...+......|++++|...|++
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKN--TDSTVITKYLKLGQQC----IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4577788888999999999999999988  788997 999999999    898999999999999999999999999999


Q ss_pred             HHHh
Q 033417           97 ALKL  100 (119)
Q Consensus        97 al~l  100 (119)
                      +++.
T Consensus       404 ~l~~  407 (679)
T 4e6h_A          404 CIDR  407 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.80  E-value=0.011  Score=45.60  Aligned_cols=92  Identities=4%  Similarity=-0.026  Sum_probs=78.7

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcC---HHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---YRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---~~~   89 (119)
                      +.+.+..++.....+|.+...|........+.+  .++.+-..|++++..    .|....+|..-+....+.++   ++.
T Consensus        48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~--~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~  121 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLK--QWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAV  121 (679)
T ss_dssp             CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence            445666788888999999999999999998888  899999999999999    99999999998888888899   999


Q ss_pred             HHHHHHHHHHhCC--CcHHHHHH
Q 033417           90 ALTDTEEALKLCP--TNVKVVIL  110 (119)
Q Consensus        90 A~~~~~~al~l~p--~~~~a~~~  110 (119)
                      +...|++++...|  .+++.|..
T Consensus       122 v~~lfeRal~~~~~~~sv~LW~~  144 (679)
T 4e6h_A          122 IEPVLARCLSKELGNNDLSLWLS  144 (679)
T ss_dssp             HHHHHHHHTCSSSCCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHH
Confidence            9999999999883  56666543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.45  E-value=0.028  Score=41.80  Aligned_cols=77  Identities=12%  Similarity=-0.038  Sum_probs=67.2

Q ss_pred             HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 033417           32 IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ..+..+|...--..  .+..|...|.+|+.+    .|.+...|..+|.+....|+.-+|+-+|-+++-....++.+.-++
T Consensus       153 r~l~~LGDL~RY~~--~~~~A~~~Y~~A~~~----~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL  226 (497)
T 1ya0_A          153 HCLVHLGDIARYRN--QTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHcccHHHHHH--HHHHHHHHHHHHHHh----CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence            35677888887777  799999999999999    999999999999999999999999999999998776677777666


Q ss_pred             Hhc
Q 033417          112 SGS  114 (119)
Q Consensus       112 a~~  114 (119)
                      ...
T Consensus       227 ~~~  229 (497)
T 1ya0_A          227 QKA  229 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.31  E-value=0.064  Score=38.36  Aligned_cols=67  Identities=12%  Similarity=0.044  Sum_probs=58.3

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ......++...+..+...|  ++.+++..+.+++..    +|.+-.+|..+-.++...|+..+|+..|+++.+
T Consensus       167 ~~~~~~a~~~~~~~~l~~g--~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          167 VEDKVLAHTAKAEAEIACG--RASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444566677788888988  899999999999999    999999999999999999999999999988644

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.059  Score=42.05  Aligned_cols=103  Identities=15%  Similarity=0.053  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc-------ccCCC-------cccHHHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ-------NVLSD-------SENSVLYANRAHV   80 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~-------~~~~~-------~~~~~~~~~~a~~   80 (119)
                      .+.+.++++...+|.....+.......+...+.+--+|+....++++.       .+..+       |....++..=+..
T Consensus       267 ~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~F  346 (754)
T 4gns_B          267 FTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNF  346 (754)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHH
Confidence            355667777777775443332222111111100345677777777632       00001       1112334444556


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           81 NLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++..|+|+-|+..+++|+.+-|..-..|+.++.+|..
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~  383 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK  383 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence            6678999999999999999999999999999999864

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.13  E-value=0.058  Score=32.83  Aligned_cols=60  Identities=7%  Similarity=-0.014  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHhc-H-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417           16 EKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN   81 (119)
Q Consensus        16 ~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~   81 (119)
                      .+..++.+...+ | ..-+.++.+|..+++.|  +|..|....+..|++    .|.+..+..-+..+.
T Consensus        57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg--~Y~~A~~~~~~lL~~----eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence            455666666666 6 67888999999999999  999999999999999    998887766655543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.86  E-value=0.048  Score=37.45  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=55.6

Q ss_pred             HHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           40 EYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      .+++.|  ..++|+......|+.    +|.++.....+-..+.-.|+|+.|...++.+.+++|.....
T Consensus         6 ~ll~~g--~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            6 NALSEG--QLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHTTTT--CHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHhCC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            456677  899999999999999    99999999999999999999999999999999999987544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.57  E-value=0.17  Score=31.12  Aligned_cols=61  Identities=18%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             hhHHHHHHHHHhcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417           15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN   81 (119)
Q Consensus        15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~   81 (119)
                      +.+..++.+...+| ..-+.++..|..+++.|  +|+.|....+..|++    .|++.-+..-+..+-
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg--dY~~Ar~y~d~lL~~----eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCCHHHHHHHHHHH
Confidence            45566777777777 46888999999999999  999999999999999    998888766665554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.14  E-value=0.13  Score=37.87  Aligned_cols=59  Identities=7%  Similarity=-0.023  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHh
Q 033417           50 YDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        50 ~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      +.....|++++..    .|..+.+|...+..+...|+.++|...+++++.. |.+...++..+.
T Consensus       196 ~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~  254 (493)
T 2uy1_A          196 SRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence            4456789999999    8888999999999999999999999999999999 988766654443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.88  E-value=0.083  Score=33.34  Aligned_cols=56  Identities=16%  Similarity=0.129  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           48 HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      |.+.|-..|+.++++    +...+.+|...|..-.+.|+...|.....+++.+.|...+.
T Consensus        75 D~d~aR~vy~~a~~~----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           75 EPDDARDYFQMARAN----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             CGGGCHHHHHHHHHH----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             CHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            677777777777777    66667777777777777888888888888888887765543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.38  E-value=0.34  Score=30.12  Aligned_cols=60  Identities=18%  Similarity=0.005  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHhcH-HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHH
Q 033417           15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      +.+..++.+...+| ..-+.++.+|..+++.|  +|..|.+..+..|+.    .|++.-+..-...+
T Consensus        60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~--~Y~~Ar~y~d~lL~~----eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHT----CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccchhHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHH
Confidence            44556666666666 56788999999999999  999999999999999    89887766655444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.33  E-value=0.56  Score=29.58  Aligned_cols=45  Identities=9%  Similarity=0.021  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +.+.+..+..++.+.+..|...+.--.++|  +...|...+.+||.+
T Consensus        79 aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg--nl~kARkILg~AiG~  123 (161)
T 4h7y_A           79 ARDYFQMARANCKKFAFVHISFAQFELSQG--NVKKSKQLLQKAVER  123 (161)
T ss_dssp             CHHHHHHHHHHCTTBHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhcc
Confidence            333444443334444444444444444444  455555555555554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.24  E-value=0.85  Score=32.50  Aligned_cols=81  Identities=11%  Similarity=-0.005  Sum_probs=57.5

Q ss_pred             HHHHhHHHHHhchHhHHHHHHHHHHHHhcc-----cCC--Ccc-----------cHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033417           34 LKEKGNEYVKKGKKHYYDAIDCYTRAINQN-----VLS--DSE-----------NSVLYANRAHVNLLLGNYRRALTDTE   95 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~-----~~~--~~~-----------~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...|......|  +.+.|+..+.+|+.+-     +..  .+.           ...+...++.+++..|++.+++..+.
T Consensus       118 l~~~~~~~~~~~--~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          118 EKTAGVHAAAAG--RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344555555566  7899999999999871     110  111           11244456677888999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHhccc
Q 033417           96 EALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++..+|-+..+|..+-.++.
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~  216 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYY  216 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHH
Confidence            999999999888877766554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.90  E-value=1  Score=30.93  Aligned_cols=89  Identities=9%  Similarity=-0.045  Sum_probs=66.9

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---------------------------   65 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------   65 (119)
                      .++++..+....+.+|.++..-......+.-.|  +|+.|...++....+.|.                           
T Consensus        13 L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G--~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~~   90 (273)
T 1zbp_A           13 LQQALELLIEAIKASPKDASLRSSFIELLCIDG--DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT   90 (273)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            346677788888889999999999999999989  999999999998888442                           


Q ss_pred             ----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417           66 ----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        66 ----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                          ..|.........+......|+.++|...-.++++..|.
T Consensus        91 P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           91 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence                12233333344455566678888888888888887664

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.37  E-value=0.4  Score=34.70  Aligned_cols=67  Identities=10%  Similarity=0.117  Sum_probs=55.7

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...+..+|..+++.|  +++.|+..|.+....+.. ......++...-.+.+..++|..+.....++..+
T Consensus       131 ~~~~~~la~~~~~~G--d~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          131 AQAWINLGEYYAQIG--DKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             SSCCHHHHHHHHHHC--CCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            346789999999999  999999999999887544 2345677788888888999999999999998654

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=90.92  E-value=1.3  Score=25.21  Aligned_cols=51  Identities=18%  Similarity=0.238  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHH-HHHHHHHH
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNL   82 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~   82 (119)
                      .+.+..+...|..+++.+  +|.+|+..++++..+  +.+|+...++ +.++.|.-
T Consensus        50 e~~~r~~i~eak~~y~~~--ny~ea~~l~~k~~n~--ten~~i~ki~~fyl~ec~k  101 (106)
T 2vkj_A           50 EKKARSLIAEGKDLFETA--NYGEALVFFEKALNL--SDNEEIKKIASFYLEECRK  101 (106)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhc--chhHHHHHHHHHHcc--ccCHHHHHHHHHHHHHHHH
Confidence            467888999999999999  899999999998755  0134444444 55566643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.67  E-value=2.4  Score=27.62  Aligned_cols=84  Identities=13%  Similarity=0.044  Sum_probs=61.6

Q ss_pred             HHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc----ccC---------CCcccHH-HHHHHHHHHHHh
Q 033417           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ----NVL---------SDSENSV-LYANRAHVNLLL   84 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~---------~~~~~~~-~~~~~a~~~~~l   84 (119)
                      .+-.+..+|.  +.+.+-...++.+..  +|..|+..++..|.-    +|.         ++|.+.. ++..+|......
T Consensus        52 ~Lf~L~~lNT--~Ts~YYk~LCy~klK--dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~  127 (242)
T 3kae_A           52 ALFHLHKLNT--CTSKYYESLCYKKKK--DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLS  127 (242)
T ss_dssp             HHHHHHTCCB--HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcch--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHh
Confidence            3333444444  566667788888876  999999999999833    222         3566655 455678888899


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHH
Q 033417           85 GNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      |.-+|||.++.++....|-.+.
T Consensus       128 g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          128 GYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHHH
T ss_pred             cCHHHhhhHhhhhcCCccccch
Confidence            9999999999999998875543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.57  E-value=3.9  Score=29.96  Aligned_cols=73  Identities=8%  Similarity=-0.040  Sum_probs=53.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ...|..-+....+.+  +.+.|-..|.++ ..    .+.....|...|..-...+ +.+.|...++.+++..|+.+..+.
T Consensus       286 ~~lw~~y~~~~~r~~--~~~~AR~i~~~A-~~----~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~  358 (493)
T 2uy1_A          286 DLLRINHLNYVLKKR--GLELFRKLFIEL-GN----EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE  358 (493)
T ss_dssp             HHHHHHHHHHHHHHH--CHHHHHHHHHHH-TT----SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHh-hC----CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence            455666666666666  789999999999 43    2335567777777766667 599999999999998888776544


Q ss_pred             H
Q 033417          110 L  110 (119)
Q Consensus       110 ~  110 (119)
                      .
T Consensus       359 ~  359 (493)
T 2uy1_A          359 E  359 (493)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=90.38  E-value=3.8  Score=29.51  Aligned_cols=63  Identities=11%  Similarity=-0.013  Sum_probs=51.8

Q ss_pred             HHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+|..++..|  +|.+|+..+.+.+..+.+.  ......++......+..++++.++...+.++..+
T Consensus       104 kL~~l~~~~~--~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A          104 RLIALYFDTA--LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh--hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            7899999999  9999999999988765442  2234567788888999999999999999988764

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=89.91  E-value=0.75  Score=25.71  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+..+|...=+.|  +|++|+.+|.++|+.
T Consensus        18 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           18 MARKYAINAVKADKEG--NAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            4666777788887878  899999999888876

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=89.14  E-value=0.92  Score=25.27  Aligned_cols=31  Identities=29%  Similarity=0.265  Sum_probs=25.3

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...=+.|  +|++|+.+|.++|+.
T Consensus        10 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           10 MARKYAILAVKADKEG--KVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            4666777888888888  899999999988876

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=88.87  E-value=1.1  Score=25.64  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           71 SVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      +..+-.++..+++.|+|++||++.+++.
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            4566677777788888888887766654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.56  E-value=5.9  Score=29.17  Aligned_cols=89  Identities=9%  Similarity=-0.053  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHh--cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           16 EKADLDAIAAL--KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        16 ~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+.++.....  .| +...+...-..+.+.|  ++++|...+.+.....   -..+...|..+-.++.+.|++++|...
T Consensus        89 A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~g---~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           89 GFDIFKQMIVDKVVP-NEATFTNGARLAVAKD--DPEMAFDMVKQMKAFG---IQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcC---CCCccceehHHHHHHHHCCCHHHHHHH
Confidence            34444444332  23 4566777888888888  8999999998876541   122455677777788888999999998


Q ss_pred             HHHHHH--hCCCcHHHHHHH
Q 033417           94 TEEALK--LCPTNVKVVILC  111 (119)
Q Consensus        94 ~~~al~--l~p~~~~a~~~~  111 (119)
                      +++..+  +.| +...|..+
T Consensus       163 ~~~M~~~G~~P-d~~ty~~L  181 (501)
T 4g26_A          163 DAHMVESEVVP-EEPELAAL  181 (501)
T ss_dssp             HHHHHHTTCCC-CHHHHHHH
T ss_pred             HHHHHhcCCCC-CHHHHHHH
Confidence            888665  345 33444443

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=88.24  E-value=1.2  Score=24.94  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=23.9

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...=..|  +|++|+.+|..+|+.
T Consensus        15 ~A~~lv~~Ave~D~~g--~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           15 AAATVLKRAVELDSES--RYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            3555666777777777  899999999998876

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.65  E-value=1.1  Score=33.29  Aligned_cols=43  Identities=12%  Similarity=-0.018  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           73 LYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++..+|........+..|...|.+|+.+.|++...|..+|.+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla  196 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA  196 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            3445566655667789999999999999999999999998765

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=85.90  E-value=1.8  Score=24.62  Aligned_cols=30  Identities=23%  Similarity=0.496  Sum_probs=22.7

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=..|  +|++|+..|..+++.
T Consensus        15 Ai~lv~~Ave~D~~g--~y~eAl~~Y~~Aie~   44 (93)
T 1wfd_A           15 AVAVLKRAVELDAES--RYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence            555666677777777  899998888888766

>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}

Probab=85.73  E-value=3.8  Score=29.71  Aligned_cols=52  Identities=17%  Similarity=0.122  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           49 YYDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      |+..+..++.|+...|.    ..+....++..+|.+++-+|+|++|+..+++++..
T Consensus       164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~  219 (454)
T 3myv_A          164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD  219 (454)
T ss_dssp             HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence            34455666777766543    23456678888999999999999999999999863

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=85.71  E-value=1.9  Score=23.93  Aligned_cols=30  Identities=23%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=..|  +|++|+..|..+++.
T Consensus        13 A~~l~~~Av~~D~~g--~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           13 GIELVQKAIDLDTAT--QYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            445566666666667  899999998888876

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=85.41  E-value=2.6  Score=32.28  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY   87 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~   87 (119)
                      +......|...+..|  +|.-|.+....++..    +|++..+...++.++.++|.-
T Consensus       449 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~~----~p~~~~a~~l~a~~~~~l~~~  499 (658)
T 2cfu_A          449 AERLLEQARASYARG--EYRWVVEVVNRLVFA----EPDNRAARELQADALEQLGYQ  499 (658)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHHh
Confidence            456778889999988  999999999999999    999999999999999988743

>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}

Probab=84.80  E-value=4.7  Score=29.39  Aligned_cols=53  Identities=17%  Similarity=0.168  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhcccCC----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417           49 YYDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      |+..+..++.|+...|..    ......++..+|.+++-+|+|++|+..+++++...
T Consensus       176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~  232 (477)
T 3mcx_A          176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN  232 (477)
T ss_dssp             HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence            444566677777765532    34556788889999999999999999999999753

>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}

Probab=84.72  E-value=4.5  Score=29.43  Aligned_cols=51  Identities=22%  Similarity=0.143  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhcccC----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           50 YDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        50 ~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +..+..++.|+...|.    ..+....++..+|.+++-+|+|++|+..+++++..
T Consensus       171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~  225 (461)
T 3kez_A          171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG  225 (461)
T ss_dssp             HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            4445556667666543    23555678888999999999999999999999863

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=84.34  E-value=2.1  Score=25.43  Aligned_cols=30  Identities=33%  Similarity=0.537  Sum_probs=22.0

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=..|  +|++|+.+|..++++
T Consensus        18 Ai~lv~~Ave~D~ag--~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           18 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence            445566666666667  899999888888876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=84.22  E-value=10  Score=27.82  Aligned_cols=84  Identities=10%  Similarity=0.010  Sum_probs=60.8

Q ss_pred             hhhHHHHHHHHHh--cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           14 ESEKADLDAIAAL--KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      +++...++.....  .| +...|...-..+.+.|  ++++|...|.+-.+..  ..| +...|..+-.++.+.|++++|.
T Consensus       122 ~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~G--~~P-d~~ty~~Li~~~~~~g~~d~A~  195 (501)
T 4g26_A          122 EMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKG--DADKAYEVDAHMVESE--VVP-EEPELAALLKVSMDTKNADKVY  195 (501)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTT--CCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCC--CHHHHHHHHHHHHhcC--CCC-CHHHHHHHHHHHhhCCCHHHHH
Confidence            3455555555442  34 4666777788888988  8999999999877651  134 4556778888999999999999


Q ss_pred             HHHHHHHH--hCCC
Q 033417           92 TDTEEALK--LCPT  103 (119)
Q Consensus        92 ~~~~~al~--l~p~  103 (119)
                      ..+++-.+  ..|+
T Consensus       196 ~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          196 KTLQRLRDLVRQVS  209 (501)
T ss_dssp             HHHHHHHHHTSSBC
T ss_pred             HHHHHHHHhCCCcC
Confidence            99998655  4453

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=83.76  E-value=2.4  Score=27.51  Aligned_cols=33  Identities=9%  Similarity=0.014  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcc
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQN   63 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~   63 (119)
                      ..+...+-.|..++-++  +|.+|...+.+|+..+
T Consensus        12 q~v~Y~YYlGr~~~~~~--~y~~A~~~L~~A~~~~   44 (203)
T 3t5x_A           12 QRVTYKYYVGRKAMFDS--DFKQAEEYLSFAFEHC   44 (203)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHC
Confidence            35778888999999888  8999999999999983

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.67  E-value=2.6  Score=23.44  Aligned_cols=25  Identities=28%  Similarity=0.205  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           75 ANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ..+|.-.-+.|+|++|+..|.++++
T Consensus        23 v~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           23 AINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4444444556666666666666654

>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}

Probab=83.33  E-value=5.4  Score=29.33  Aligned_cols=52  Identities=15%  Similarity=0.130  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhcccCC-------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 033417           50 YDAIDCYTRAINQNVLS-------DSENSVLYANRAHVNLLLGNYRRALTDTEEALKLC  101 (119)
Q Consensus        50 ~~A~~~~~~al~~~~~~-------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      +..+..++.|+...|..       .+....++..+|.+++-+++|++|+..+++++...
T Consensus       175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~  233 (495)
T 3lew_A          175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD  233 (495)
T ss_dssp             HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            44445556666554431       24556788889999999999999999999999753

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=82.55  E-value=3.6  Score=22.38  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             HHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           35 KEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      ..+|..+...|  ++++|+.++.+||..
T Consensus        21 V~~GE~L~~~g--~~~~~~~hf~nAl~V   46 (73)
T 3ax2_A           21 IQLGEELLAQG--DYEKGVDHLTNAIAV   46 (73)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence            46788888888  888888888888888

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=81.49  E-value=13  Score=30.60  Aligned_cols=79  Identities=9%  Similarity=-0.115  Sum_probs=56.6

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK--LCPTNVKV  107 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~--l~p~~~~a  107 (119)
                      .-..+...-+.+.+.|  +.++|...+..-.+...+...-+...|+.+-..+.+.|+.++|+..+++-.+  +.| +..+
T Consensus       126 ~~~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvT  202 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLS  202 (1134)
T ss_dssp             HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred             HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHH
Confidence            4445778888899999  8999999996643221001234667788888999999999999999998765  456 4555


Q ss_pred             HHHH
Q 033417          108 VILC  111 (119)
Q Consensus       108 ~~~~  111 (119)
                      |..+
T Consensus       203 YntL  206 (1134)
T 3spa_A          203 YAAA  206 (1134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.37  E-value=3.6  Score=22.79  Aligned_cols=25  Identities=24%  Similarity=0.070  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           75 ANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ..+|.-.-+.|+|++|+..|.++++
T Consensus        15 v~~Ave~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           15 AILAVKADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3444444456666666666666554

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=80.59  E-value=7.3  Score=25.21  Aligned_cols=43  Identities=7%  Similarity=0.041  Sum_probs=34.7

Q ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           68 SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      .+-.+.++.+|..++..++|.+|..++.+|++..|.......+
T Consensus        11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~   53 (203)
T 3t5x_A           11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKR   53 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHH
Confidence            3456788889999999999999999999999988876544433

>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}

Probab=80.07  E-value=7.7  Score=28.64  Aligned_cols=51  Identities=18%  Similarity=0.203  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhcccC-------CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 033417           50 YDAIDCYTRAINQNVL-------SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL  100 (119)
Q Consensus        50 ~~A~~~~~~al~~~~~-------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +..+..++.|+...|.       .......++..+|.+++-.++|++|+..+++++..
T Consensus       154 ~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~  211 (517)
T 3qnk_A          154 DFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL  211 (517)
T ss_dssp             HHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445556666665543       13455678888999999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-06
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 34  LKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD 93
             E  +   + G   +  A     +   Q    + +N+ +    + ++       R+   
Sbjct: 2   PMELAHREYQAGD--FEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHF 55

Query: 94  TEEALKLCPTNVKV 107
           +  A+K  P   + 
Sbjct: 56  STLAIKQNPLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 41  YVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL 100
            +K+ + +  +A+  Y +A+        E +  ++N A V    G  + AL   +EA+++
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

Query: 101 CPTNVK 106
            PT   
Sbjct: 369 SPTFAD 374

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-05
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 9/72 (12%)

Query: 31  AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           AI L  +G     K    +  A+D ++   +        +S +  N   +  +L N   A
Sbjct: 5   AISLWNEGVLAADKKD--WKGALDAFSAVQD-------PHSRICFNIGCMYTILKNMTEA 55

Query: 91  LTDTEEALKLCP 102
                 ++    
Sbjct: 56  EKAFTRSINRDK 67

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 30  AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89
           +A ELKE+GN      K  Y +A  CY RAI +N       +V Y NRA   L +    +
Sbjct: 3   SAQELKEQGNRLFVGRK--YPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQ 56

Query: 90  ALTDTEEALKLCPTNVK 106
           AL D   AL+L   +VK
Sbjct: 57  ALADCRRALELDGQSVK 73

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 36  EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTE 95
           E+G   +++G     +A+  +  A+ Q    D ++   +               A++   
Sbjct: 24  EEGLRRLQEGD--LPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALR 77

Query: 96  EALKLCP 102
             L+L P
Sbjct: 78  RCLELKP 84

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQN 63
          ELKEKGN+ +  G     DA+ CY+ AI  +
Sbjct: 5  ELKEKGNKALSVGN--IDDALQCYSEAIKLD 33

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 13/72 (18%), Positives = 22/72 (30%)

Query: 48  HYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV 107
                +    + +    L+D E + L   R  +   LG    A  D  +AL + P   +V
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 108 VILCSGSHPNQF 119
                       
Sbjct: 74  FNYLGIYLTQAG 85

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 38  GNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA 97
               + +G+     A++    AI        +++ L ++   +  + G++ RA     ++
Sbjct: 3   WKNALSEGQ--LQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQS 56

Query: 98  LKLCPTN 104
           +KL P  
Sbjct: 57  IKLFPEY 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.73
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.68
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.67
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.65
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.64
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.63
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.61
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.6
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.59
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.56
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.55
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.46
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.37
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.28
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.19
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.05
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.92
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.83
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.62
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.14
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.03
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.41
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.39
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.19
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.31
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.63
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	89.65
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	86.2
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.71
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.35
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	80.61

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=7.4e-19  Score=113.03  Aligned_cols=81  Identities=35%  Similarity=0.456  Sum_probs=76.7

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+.+.|+.+++.|  +|++|+..|+++|.+    +|.++.+|.++|.||.++|++++|+.+|+++++++|+++.+|++
T Consensus         4 a~~l~~~Gn~~~~~g--~~~~Ai~~~~kal~~----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~   77 (201)
T d2c2la1           4 AQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence            667899999999999  899999999999999    99999999999999999999999999999999999999999999


Q ss_pred             HHhcccC
Q 033417          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.+|+.
T Consensus        78 lg~~~~~   84 (201)
T d2c2la1          78 LGQCQLE   84 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.6e-18  Score=101.30  Aligned_cols=97  Identities=16%  Similarity=0.182  Sum_probs=87.5

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+..+...+|+++..+...|.+++..|  ++++|+..|.+++.+    +|.++.+|+++|.++..+|++++|+.
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~g~~~~~~~~~~~A~~   92 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--DYQKAYEDGCKTVDL----KPDWGKGYSRKAAALEFLNRFEEAKR   92 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhcccccccccc--cccccchhhhhHHHh----ccchhhHHHHHHHHHHHccCHHHHHH
Confidence            456888899999999999999999999999988  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++++|+++.++..++.+.
T Consensus        93 ~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          93 TYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999998887653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.2e-18  Score=102.03  Aligned_cols=82  Identities=34%  Similarity=0.459  Sum_probs=77.8

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+.+.|+.+++.|  +|++|+..|+++|++    +|.++.+|.++|.|+..+|++++|+.+|.++++++|+++.+|+
T Consensus         2 ~~~~l~~~g~~~~~~g--~~~eAi~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   75 (117)
T d1elwa_           2 QVNELKEKGNKALSVG--NIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   75 (117)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHH
Confidence            3566889999999999  899999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HHHhcccC
Q 033417          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      ++|.++..
T Consensus        76 ~~g~~~~~   83 (117)
T d1elwa_          76 RKAAALEF   83 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-17  Score=103.96  Aligned_cols=80  Identities=33%  Similarity=0.429  Sum_probs=53.8

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+..+|+.+++.|  +|++|+..|++++.+    +|+++.+|.++|.|++.+|++++|+.+|+++++++|+++.+|+.
T Consensus        10 a~~l~~~gn~~~~~~--~y~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_          10 AEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHhhhcccc----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            455666666666666  666666666666666    66666666666666666666666666666666666666666666


Q ss_pred             HHhccc
Q 033417          111 CSGSHP  116 (119)
Q Consensus       111 ~a~~~~  116 (119)
                      +|.++.
T Consensus        84 ~g~~~~   89 (159)
T d1a17a_          84 RAASNM   89 (159)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.1e-17  Score=99.99  Aligned_cols=80  Identities=25%  Similarity=0.292  Sum_probs=73.1

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+.+.|+.+++.|  +|++|+.+|+++|++    +|.++.++.++|.|+..+|+|++|+.+|+++++++|.++.++.
T Consensus         3 ~a~~~k~~G~~~~~~~--~y~~Ai~~y~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKK--DFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            4778899999999999  999999999999999    9999999999999999999999999999999999998876666


Q ss_pred             HHHhcc
Q 033417          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .+|.+|
T Consensus        77 ~~a~~~   82 (128)
T d1elra_          77 QIAKAY   82 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.9e-16  Score=97.85  Aligned_cols=96  Identities=27%  Similarity=0.296  Sum_probs=91.0

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -+++...+.++..++|+++..|...|.+++..|  ++++|+..|.++|++    +|.++.++.++|.++..+|++++|+.
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~kal~~----~p~~~~a~~~~g~~~~~~g~~~eA~~   99 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALR   99 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhcc--ccchHHHHHHHHHHH----cccchHHHHHHHHHHHHcCCHHHHHH
Confidence            356888999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhc
Q 033417           93 DTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ++++++.++|+++.++..++.+
T Consensus       100 ~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_         100 DYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999998887655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.7e-16  Score=104.13  Aligned_cols=85  Identities=18%  Similarity=0.105  Sum_probs=80.8

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ++..+..++.+|.++++.|  +|++|+..|+++|.+    +|+++.+|+++|.++..+|++++|+.+|+++++++|+++.
T Consensus        33 ~~~~a~~~~~~G~~y~~~g--~~~~A~~~~~~al~l----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  106 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  106 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             CHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHhhcc----CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhh
Confidence            6778999999999999999  899999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC
Q 033417          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      +++.+|.++..
T Consensus       107 a~~~lg~~~~~  117 (259)
T d1xnfa_         107 AHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999998753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.2e-15  Score=87.33  Aligned_cols=82  Identities=18%  Similarity=0.084  Sum_probs=73.4

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ++.+++.|..+++.|  +|.+|+..|++|+++.|.   ..++.+.++.++|.++.++|++++|+..|+++|+++|+++.+
T Consensus         5 addc~~lG~~~~~~g--~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYTEA--DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            456789999999999  999999999999998543   244567899999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 033417          108 VILCSGS  114 (119)
Q Consensus       108 ~~~~a~~  114 (119)
                      +.+++..
T Consensus        83 ~~Nl~~~   89 (95)
T d1tjca_          83 NGNLKYF   89 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.64  E-value=6.6e-16  Score=92.02  Aligned_cols=79  Identities=16%  Similarity=0.134  Sum_probs=74.8

Q ss_pred             HHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417           33 ELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      ..++.|..+++.|  ++++|+..|++++..    +|+++.+|.++|.++.++|++++|+.+++++++++|++..+++.+|
T Consensus        18 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          18 NPMEEGLSMLKLA--NLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             CHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--hhHHHHHHHhhhccc----ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            3478899999999  899999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             hcccC
Q 033417          113 GSHPN  117 (119)
Q Consensus       113 ~~~~~  117 (119)
                      .+|..
T Consensus        92 ~~y~~   96 (112)
T d1hxia_          92 VSHTN   96 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.64  E-value=1.6e-15  Score=94.88  Aligned_cols=86  Identities=24%  Similarity=0.297  Sum_probs=74.4

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD------------SENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+..+.+.|+.+|+.|  +|.+|+..|+++|.+.+...            +....++.|+|.|++++|++.+|+.+|+++
T Consensus        16 ~a~~~~~~G~~~f~~~--~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKN--EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            4778889999999999  99999999999998854421            112457889999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHhcccC
Q 033417           98 LKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+++|+++++|+++|.+|..
T Consensus        94 l~~~p~~~ka~~~~g~~~~~  113 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMY  113 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHH
Confidence            99999999999999998753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.6e-16  Score=92.88  Aligned_cols=98  Identities=15%  Similarity=0.016  Sum_probs=85.5

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCccc--HHHHHHHHHHHHHhcCHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDSEN--SVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~a~~~~~l~~~~~A   90 (119)
                      +++.+.+.++..++|.++..+++.|.++++.+ .+++++|+..|++++..    +|..  +.+++++|.+|..+|++++|
T Consensus        16 ~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~~~~Lg~~y~~~g~~~~A   91 (122)
T d1nzna_          16 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHHHHHHHHHHHHHhhhHHH
Confidence            46778899999999999999999999998632 12778899999999998    6644  56899999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.+|+++|+++|++..+...++.+.
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            9999999999999999998877553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.63  E-value=8.3e-16  Score=97.40  Aligned_cols=86  Identities=27%  Similarity=0.274  Sum_probs=68.7

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-----------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-----------DSENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+..+.+.|+.+|+.|  +|.+|+..|+++|...+..           .+....+|.|+|.|++++|++.+|+.+|++++
T Consensus        14 ~a~~~~e~G~~~~~~~--~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGG--KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            4777888899999888  8999999998888764331           22234677888889889999999999999999


Q ss_pred             HhCCCcHHHHHHHHhcccC
Q 033417           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++|+++++++++|.+|..
T Consensus        92 ~l~p~~~~a~~~~~~~~~~  110 (168)
T d1kt1a1          92 GLDSANEKGLYRRGEAQLL  110 (168)
T ss_dssp             HHCTTCHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHH
Confidence            9999889999888888753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.4e-16  Score=105.79  Aligned_cols=100  Identities=11%  Similarity=0.003  Sum_probs=85.0

Q ss_pred             CChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHH
Q 033417           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAL   91 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .+++++..++++..++|++..+|..+|.++...|+ ++++|+..+.+++.+    +|.+..+|.++|.++..+|++++|+
T Consensus        58 ~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~-~~~eal~~~~~al~~----~p~~~~a~~~~~~~~~~l~~~~eAl  132 (315)
T d2h6fa1          58 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-DLHEEMNYITAIIEE----QPKNYQVWHHRRVLVEWLRDPSQEL  132 (315)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHH----HHhhhhHHHHHhHHHHhhccHHHHH
Confidence            46778888888888999999999999988888764 688999999999988    8888888888888888888888888


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           92 TDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+++++++++|++..+|+.+|.++.
T Consensus       133 ~~~~kal~~dp~n~~a~~~~~~~~~  157 (315)
T d2h6fa1         133 EFIADILNQDAKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcchHHHHHHHHHHH
Confidence            8888888888888888888887663

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=3.8e-15  Score=94.16  Aligned_cols=85  Identities=21%  Similarity=0.207  Sum_probs=80.0

Q ss_pred             HhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Q 033417           25 ALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .++|..+..+.++|.++++.|  +|++|+..|+++|++    +|.++.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~--~~~~Ai~~~~~al~~----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMS--DWQGAVDSCLEALEI----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhChhhHHHHHHHHHHHHhhc--ccchhhhhhhhhhhh----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            346888999999999999999  999999999999999    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 033417          105 VKVVILCSGSH  115 (119)
Q Consensus       105 ~~a~~~~a~~~  115 (119)
                      ..++..++.+.
T Consensus       145 ~~~~~~l~~~~  155 (169)
T d1ihga1         145 KAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998887764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=7.5e-16  Score=98.66  Aligned_cols=86  Identities=15%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -++++..+.++..++|.++..|.++|.++++.|  +|++|+..|.++|.+    +|.++.+|+++|.++..+|++++|+.
T Consensus        20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~--~~~~Ai~~~~~al~l----~p~~~~a~~~lg~~~~~l~~~~~A~~   93 (201)
T d2c2la1          20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA   93 (201)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh--hhhhhhHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            457889999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCc
Q 033417           93 DTEEALKLCPTN  104 (119)
Q Consensus        93 ~~~~al~l~p~~  104 (119)
                      +++++++++|++
T Consensus        94 ~~~~al~l~p~~  105 (201)
T d2c2la1          94 NLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCccc
Confidence            999999998753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.5e-15  Score=94.72  Aligned_cols=86  Identities=23%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC-----------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD-----------SENSVLYANRAHVNLLLGNYRRALTDTEEAL   98 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+..+.+.|+.+|+.|  +|++|+..|+++|...|...           +....+|.++|.|++++|+|++|+.+++++|
T Consensus        12 ~a~~l~~~G~~~~~~~--~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEG--KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            3777888999999988  89999999999988844321           1224577888999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHhcccC
Q 033417           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+++.+++++|.+|..
T Consensus        90 ~~~p~~~~a~~~~g~~~~~  108 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLA  108 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHH
Confidence            9999999999999888754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=4.9e-15  Score=92.00  Aligned_cols=98  Identities=14%  Similarity=0.065  Sum_probs=87.4

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhc--------hHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKG--------KKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      +++...++++..++|+++.++...|.++...+        ++.+++|+..|+++|++    +|+++.+|+++|.++..+|
T Consensus        14 e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l----~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          14 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh----cchhhHHHhhHHHHHHHcc
Confidence            57888999999999999999999999998543        11568999999999999    9999999999999998876


Q ss_pred             C-----------HHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           86 N-----------YRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        86 ~-----------~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +           |.+|+..|+++++++|++..++..++.+.
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            4           79999999999999999999999888654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-15  Score=103.22  Aligned_cols=98  Identities=19%  Similarity=0.183  Sum_probs=86.8

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+..+....|.....+...|.++...|  ++++|+..|++++++    +|+++.+++++|.++..+|++++|+..
T Consensus       288 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~  361 (388)
T d1w3ba_         288 AEAEDCYNTALRLCPTHADSLNNLANIKREQG--NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHhhhccCCccchhhhHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            45666777777778888888888888888888  899999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcccC
Q 033417           94 TEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+++++++|+++.+|+.+|.+|.+
T Consensus       362 ~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         362 YKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999998753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=7.5e-15  Score=97.00  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=90.6

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++..++|+++.++..+|.++...|  ++++|+..|++++.+    +|+++.++.++|.++..+|++++|+.
T Consensus        53 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~  126 (259)
T d1xnfa_          53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD  126 (259)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH--HHHHhhhhhhHHHHH----HhhhhhhHHHHHHHHHHHhhHHHHHH
Confidence            457889999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhcc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++++++++|.+...+..++.++
T Consensus       127 ~~~~al~~~p~~~~~~~~~~~~~  149 (259)
T d1xnfa_         127 DLLAFYQDDPNDPFRSLWLYLAE  149 (259)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhccccHHHHHHHHHHH
Confidence            99999999999988877766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-15  Score=103.24  Aligned_cols=96  Identities=15%  Similarity=-0.003  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++..++|+...+|..+|.++.+.|  ++++|+..+.+++++    +|.+..+|.++|.++..+|++++|+.+
T Consensus        95 ~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~--~~~eAl~~~~kal~~----dp~n~~a~~~~~~~~~~~~~~~~Al~~  168 (315)
T d2h6fa1          95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR--DPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQY  168 (315)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc--cHHHHHHHHhhhhhh----hhcchHHHHHHHHHHHHHHhhHHHHHH
Confidence            57888999999999999999999999999999  899999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcc
Q 033417           94 TEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |+++|+++|.+..+|+.+|.++
T Consensus       169 ~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         169 VDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCccHHHHHHHHHHH
Confidence            9999999999999999998775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.2e-14  Score=88.84  Aligned_cols=81  Identities=19%  Similarity=0.196  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      -....+.+.|.++++.|  +|++|+..++++|.+    +|.++.+++++|.|+..+|++++|+.+|+++++++|+++.+.
T Consensus        60 ~~~~~~~nla~~y~k~~--~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~  133 (170)
T d1p5qa1          60 LRLASHLNLAMCHLKLQ--AFSAAIESCNKALEL----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK  133 (170)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hHHHHHHHHHHHHHhhh--hcccccchhhhhhhc----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            34566788999999999  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHHHhcc
Q 033417          109 ILCSGSH  115 (119)
Q Consensus       109 ~~~a~~~  115 (119)
                      ..++.++
T Consensus       134 ~~l~~~~  140 (170)
T d1p5qa1         134 TQLAVCQ  140 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1e-14  Score=94.21  Aligned_cols=91  Identities=25%  Similarity=0.261  Sum_probs=76.7

Q ss_pred             HHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ++....+.|.++..++++|.+++..|  +|++|+..|+++|++    +|.++.+|+++|.|+.++|++++|+.+|++++.
T Consensus        25 l~~~~~i~~~~~~~~~nlG~~~~~~g--~~~~A~~~~~kAl~l----dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          25 LDAFSAVQDPHSRICFNIGCMYTILK--NMTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHTSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcC--CchhHHHHHHHHHHH----hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            33334456667788999999999999  899999999999999    999999999999999999999999999999998


Q ss_pred             hCCCc----------------HHHHHHHHhccc
Q 033417          100 LCPTN----------------VKVVILCSGSHP  116 (119)
Q Consensus       100 l~p~~----------------~~a~~~~a~~~~  116 (119)
                      ..|.+                .++++++|.++.
T Consensus        99 ~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~  131 (192)
T d1hh8a_          99 QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA  131 (192)
T ss_dssp             TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred             hCccCchHHHHHhhhhcccchHHHHHHHHHHHH
Confidence            75543                467777777654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=1.2e-14  Score=91.80  Aligned_cols=86  Identities=21%  Similarity=0.245  Sum_probs=76.3

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC------------CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL------------SDSENSVLYANRAHVNLLLGNYRRALTDTEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+..+...|+.++..|  +|.+|+..|+++|.+.+.            .+|....++.++|.|+.++|+|++|+.+|+++
T Consensus        26 ~a~~~~~~~~~~~~~~--~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            3556788999999999  899999999999875321            25778889999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHhcccC
Q 033417           98 LKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+++|+++.+|+++|.+|..
T Consensus       104 l~~~p~~~~a~~~~g~~~~~  123 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQG  123 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHH
Confidence            99999999999999999864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.55  E-value=7.8e-14  Score=86.96  Aligned_cols=80  Identities=19%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ....+.++|.++++.|  +|++|+..++++|++    +|.++.+|+++|.++..+|++++|+.+|+++++++|++..+..
T Consensus        66 ~~~~~~Nla~~~~~l~--~~~~Al~~~~~al~~----~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1          66 EISCNLNLATCYNKNK--DYPKAIDHASKVLKI----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHhhHHHHHHHhc--ccchhhhhhhccccc----cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4567889999999999  899999999999999    9999999999999999999999999999999999999999988


Q ss_pred             HHHhcc
Q 033417          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .++.+.
T Consensus       140 ~l~~~~  145 (153)
T d2fbna1         140 SYELCV  145 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.54  E-value=9.6e-14  Score=87.68  Aligned_cols=83  Identities=22%  Similarity=0.294  Sum_probs=76.6

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+-....+.++|.++++.|  +|++|+..+++++.+    +|.++.+++++|.++..+|++++|+.+|.++++++|++..
T Consensus        60 ~~~~~~~~~Nla~~~~~l~--~~~~Ai~~~~~al~l----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          60 ESFLLAAFLNLAMCYLKLR--EYTKAVECCDKALGL----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             chhHHHHHHhHHHHHHHhh--hcccchhhhhhhhhc----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3445677889999999999  899999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 033417          107 VVILCSGSH  115 (119)
Q Consensus       107 a~~~~a~~~  115 (119)
                      ++..++.+.
T Consensus       134 ~~~~l~~~~  142 (168)
T d1kt1a1         134 ARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-14  Score=92.36  Aligned_cols=78  Identities=15%  Similarity=0.078  Sum_probs=71.0

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+++.|..++..|  +|+.|++.|++   +    .|.++.+++++|.+++.+|++++|+.+|+++++++|+++.+|+.
T Consensus         5 ~~~l~~~g~~~~~~~--d~~~Al~~~~~---i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~   75 (192)
T d1hh8a_           5 AISLWNEGVLAADKK--DWKGALDAFSA---V----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   75 (192)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHT---S----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHh---c----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH
Confidence            557789999999999  99999999986   3    45577899999999999999999999999999999999999999


Q ss_pred             HHhcccC
Q 033417          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.++.+
T Consensus        76 ~g~~~~~   82 (192)
T d1hh8a_          76 RGMLYYQ   82 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998854

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=98.04  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDT   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++...+|+.+..+...|.+++..|  ++++|+..|++++++    +|.++.+++++|.++..+|++++|+..|
T Consensus       190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~  263 (323)
T d1fcha_         190 KAVDCFTAALSVRPNDYLLWNKLGATLANGN--QSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGAHREAVEHF  263 (323)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhcccccccccccccccchhhhhhcccccc--cchhHHHHHHHHHHH----hhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3444555555555555555555555555555  555555555555555    5555555555555555555555555555


Q ss_pred             HHHHHhCCCcHHHHH
Q 033417           95 EEALKLCPTNVKVVI  109 (119)
Q Consensus        95 ~~al~l~p~~~~a~~  109 (119)
                      +++++++|++..++.
T Consensus       264 ~~al~l~p~~~~~~~  278 (323)
T d1fcha_         264 LEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHHTC-----
T ss_pred             HHHHHhCCcChhhhh
Confidence            555555555544433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.8e-14  Score=94.67  Aligned_cols=96  Identities=20%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHhcHH--HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           16 EKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        16 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+.+.++..++|+  .+..+...|..+...|  ++++|+..|++++..    +|+++.++.++|.++..+|++++|+..
T Consensus       155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~  228 (323)
T d1fcha_         155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--EYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAVAA  228 (323)
T ss_dssp             HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHH--HHhhhhccccccccc----ccccccchhhhhhcccccccchhHHHH
Confidence            44555666667765  3567889999999999  899999999999999    999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcccC
Q 033417           94 TEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+++++++|+++.+++.+|.+|..
T Consensus       229 ~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         229 YRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHH
Confidence            999999999999999999998753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.47  E-value=1.7e-13  Score=81.30  Aligned_cols=80  Identities=15%  Similarity=0.015  Sum_probs=76.4

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHH
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++..++|+++.++..+|.++.+.|  ++++|+..|++++++    +|+++.++.++|.++...|++++|+.
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~la~~y~~~g~~~~A~~  105 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--KDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALA  105 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhh--hHHHhhccccccccc----ccccccchHHHHHHHHHCCCHHHHHH
Confidence            457888999999999999999999999999999  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHH
Q 033417           93 DTEEAL   98 (119)
Q Consensus        93 ~~~~al   98 (119)
                      .+++.|
T Consensus       106 ~l~~~l  111 (112)
T d1hxia_         106 SLRAWL  111 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-13  Score=93.24  Aligned_cols=98  Identities=17%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++..++|+++..+...|..+...|  ++++|+..|.+++..    .|.++..+..+|.++..+|++++|+..
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  327 (388)
T d1w3ba_         254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKG--SVAEAEDCYNTALRL----CPTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhhhcc----CCccchhhhHHHHHHHHCCCHHHHHHH
Confidence            45666777777777777777778888887777  788888888887777    788888888888888888888888888


Q ss_pred             HHHHHHhCCCcHHHHHHHHhcccC
Q 033417           94 TEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++++|+++.+++.+|.+|..
T Consensus       328 ~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         328 YRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            888888888888888888887754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.4e-12  Score=77.80  Aligned_cols=95  Identities=17%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC---cccHHHHHHHHHHHHHhcCHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD---SENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      ++++..+.++..++|+++..+.++|.++++.|  +|++|+..|+++|++.|...   +....+|.++|.++..++++++|
T Consensus        21 ~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A   98 (128)
T d1elra_          21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKG--DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA   98 (128)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC--chHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            57889999999999999999999999999999  99999999999999933311   12235788888899999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHH
Q 033417           91 LTDTEEALKLCPTNVKVVILC  111 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +..+.+++..+|+ +.....+
T Consensus        99 ~~~~~kal~~~~~-~~~~~~l  118 (128)
T d1elra_          99 IHFYNKSLAEHRT-PDVLKKC  118 (128)
T ss_dssp             HHHHHHHHHHCCC-HHHHHHH
T ss_pred             HHHHHHHHhcCCC-HHHHHHH
Confidence            9999999999875 4444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.37  E-value=6.3e-13  Score=82.23  Aligned_cols=71  Identities=17%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             HHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCCcHHHHH
Q 033417           40 EYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL----------GNYRRALTDTEEALKLCPTNVKVVI  109 (119)
Q Consensus        40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l----------~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+-+.+  .|++|+..|++++++    +|.++.+++++|.++..+          +.+++|+..|+++++++|+++.+|+
T Consensus         6 ~~~r~~--~fe~A~~~~e~al~~----~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1           6 EFDRIL--LFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             SHHHHH--HHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHc--cHHHHHHHHHHHHhh----CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            344556  799999999999999    999999999999999864          5568999999999999999999999


Q ss_pred             HHHhccc
Q 033417          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      ++|.+|.
T Consensus        80 ~lG~~y~   86 (145)
T d1zu2a1          80 CIGNAYT   86 (145)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            9999875

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.28  E-value=4.9e-12  Score=78.68  Aligned_cols=85  Identities=16%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSD--------SENSVLYANRAHVNLLLGNYRRALTDTEEALKLCP  102 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +..+...|+.++..|  +|++|+..|+++|++.|...        +..+.+|.++|.|+..+|+|++|+.++++++.+.|
T Consensus         9 a~~~l~~g~~~~~~g--~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           9 AYLALSDAQRQLVAG--EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            344456699999999  89999999999999954421        12357899999999999999999999999998754


Q ss_pred             -----------CcHHHHHHHHhcccC
Q 033417          103 -----------TNVKVVILCSGSHPN  117 (119)
Q Consensus       103 -----------~~~~a~~~~a~~~~~  117 (119)
                                 ....+++++|.+|..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~  112 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDG  112 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHH
Confidence                       235678999988753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-11  Score=73.72  Aligned_cols=76  Identities=13%  Similarity=-0.005  Sum_probs=66.4

Q ss_pred             HHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCc--HHHHHH
Q 033417           36 EKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL---LGNYRRALTDTEEALKLCPTN--VKVVIL  110 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~---l~~~~~A~~~~~~al~l~p~~--~~a~~~  110 (119)
                      +.++.+...+  ++++|...|.+++.+    +|.++.+++++|.|+++   .+++.+|+..+++++..+|.+  ..+++.
T Consensus         4 ~l~n~~~~~~--~l~~Ae~~Y~~aL~~----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~   77 (122)
T d1nzna_           4 AVLNELVSVE--DLLKFEKKFQSEKAA----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   77 (122)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHhcCHH--HHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            4667778877  999999999999999    99999999999999986   455678999999999998865  568999


Q ss_pred             HHhcccC
Q 033417          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.+|..
T Consensus        78 Lg~~y~~   84 (122)
T d1nzna_          78 LAVGNYR   84 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998854

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.18  E-value=4.8e-11  Score=74.05  Aligned_cols=87  Identities=10%  Similarity=0.036  Sum_probs=72.2

Q ss_pred             hhhHHHHHHHHHhcHH------------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC-------CcccHHHH
Q 033417           14 ESEKADLDAIAALKES------------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS-------DSENSVLY   74 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~   74 (119)
                      ++++..+.++..++|+            .+..+.+.|.++...|  +|++|+..+++++.+.|+.       .+....++
T Consensus        26 ~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~  103 (156)
T d2hr2a1          26 DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKALHYFNRRGELNQDEGKLWISAV  103 (156)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC--ccchhhHhhhhhhhcccccccccccccchhHHHH
Confidence            4677777887776653            4678999999999999  9999999999999874321       22345689


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 033417           75 ANRAHVNLLLGNYRRALTDTEEALKLCP  102 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +++|.++..+|++++|+.+|++++++.|
T Consensus       104 ~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1         104 YSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999999865

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.3e-10  Score=82.76  Aligned_cols=81  Identities=11%  Similarity=-0.050  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           29 SAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +....+..+|..+...|  +|++|+..|.+|+.+    +|+++..|+++|.++...|++.+|+.+|.+++.++|.++.++
T Consensus       150 ~~~~~~~~LG~l~~~~~--~~~~A~~~y~~A~~l----~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~  223 (497)
T d1ya0a1         150 ICQHCLVHLGDIARYRN--QTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS  223 (497)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred             CHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence            33567889999999998  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHHHhcc
Q 033417          109 ILCSGSH  115 (119)
Q Consensus       109 ~~~a~~~  115 (119)
                      .+++.++
T Consensus       224 ~nL~~~~  230 (497)
T d1ya0a1         224 TNLQKAL  230 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1.7e-10  Score=78.83  Aligned_cols=99  Identities=11%  Similarity=0.006  Sum_probs=88.2

Q ss_pred             hhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHH-HHHHHHHHHhcCHHHHHH
Q 033417           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~~l~~~~~A~~   92 (119)
                      .++...++.+...+|++...+..+|..+...+++++++|+..+.+++.+    +|.+...+ ...|.++...+.+++|+.
T Consensus        90 ~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh----CchhhhhhhhHHHHHHHhccccHHHHH
Confidence            3567788888999999999999999999887744699999999999999    99888775 567788889999999999


Q ss_pred             HHHHHHHhCCCcHHHHHHHHhccc
Q 033417           93 DTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++++|++..+|+.+|.++.
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLP  189 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999999999999999998864

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=1.5e-09  Score=68.94  Aligned_cols=89  Identities=10%  Similarity=0.020  Sum_probs=75.5

Q ss_pred             cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC------------------CcccHHHHHHHHHHHHHhcCHH
Q 033417           27 KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS------------------DSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      |-..-+.+...|......|  ++++|+..|.+|+.+-+-.                  .+....++.+++.++..+|+++
T Consensus         7 D~~~f~~~~~~g~~~~~~g--~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAG--RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            3445677889999999999  9999999999999983211                  1223467899999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHhcccC
Q 033417           89 RALTDTEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+.++++++.++|.+..+|..++.++..
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~  113 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYL  113 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=2.2e-09  Score=73.12  Aligned_cols=103  Identities=10%  Similarity=-0.050  Sum_probs=85.6

Q ss_pred             CCCChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhch--------HhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHH
Q 033417           10 EPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGK--------KHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVN   81 (119)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~   81 (119)
                      .+.++++.+.++++..++|++..+|..++..+...+.        +.+.+|+..+++++..    +|.++.++.++|.++
T Consensus        42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~----~pk~~~~~~~~~~~~  117 (334)
T d1dcea1          42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLL  117 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh----CCCcHHHHHHhhHHH
Confidence            3456789999999999999999888766666544321        1589999999999999    999999999999999


Q ss_pred             HHhcC--HHHHHHHHHHHHHhCCCcHHHHH-HHHhccc
Q 033417           82 LLLGN--YRRALTDTEEALKLCPTNVKVVI-LCSGSHP  116 (119)
Q Consensus        82 ~~l~~--~~~A~~~~~~al~l~p~~~~a~~-~~a~~~~  116 (119)
                      ..+++  +++|+..+.++++++|.+..+++ ..|.++.
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~  155 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ  155 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHH
Confidence            88875  89999999999999999998865 5566553

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1e-08  Score=61.30  Aligned_cols=99  Identities=13%  Similarity=-0.008  Sum_probs=75.6

Q ss_pred             CCCChhhHHHHHHHHHhc--H-HHHHHHHHHhHHHHHhc-hHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHh
Q 033417           10 EPKTESEKADLDAIAALK--E-SAAIELKEKGNEYVKKG-KKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLL   84 (119)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l   84 (119)
                      .+.+.+....+.......  | -....-++.|.++.++. ..+.++++..++.++..    +|... .+++++|.+|+++
T Consensus        11 ~pl~~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~----~p~~~rd~lY~Lav~yykl   86 (124)
T d2pqrb1          11 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYKL   86 (124)
T ss_dssp             SCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc----CchhHHHHHHHHHHHHHHH
Confidence            445555555554432221  1 13567788898888653 12678999999999998    88765 7999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 033417           85 GNYRRALTDTEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      |+|++|+.+++++|+++|+|..+...+-
T Consensus        87 gdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          87 GEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            9999999999999999999999876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.92  E-value=2.2e-09  Score=72.17  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             HHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHhcc
Q 033417           39 NEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        39 ~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ...++.|  ++++|+..|+++|+.    +|.++.++.+++.++...|++++|+..++++++++|++..++..++.++
T Consensus         4 ~~aL~~G--~l~eAl~~l~~al~~----~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           4 KNALSEG--QLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             HHHTTTT--CHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHCC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4456677  899999999999999    9999999999999999999999999999999999999988887776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.7e-10  Score=80.64  Aligned_cols=85  Identities=9%  Similarity=-0.028  Sum_probs=50.7

Q ss_pred             HHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 033417           24 AALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPT  103 (119)
Q Consensus        24 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      ..++|+....+.+.|..+.+.|  ++++|+..+.+++..    ++  ..++.++|.++...|++++|+.+|++|++++|+
T Consensus       113 ~~l~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~  184 (497)
T d1ya0a1         113 FNVDLPCRVKSSQLGIISNKQT--HTSAIVKPQSSSCSY----IC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS  184 (497)
T ss_dssp             --------------------------------CCHHHHH----HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HCCChhhHHHHHHhHHHHHhCC--CHHHHHHHHHHHhCC----CH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            3467888999999999999998  899999999999988    54  467889999999999999999999999999999


Q ss_pred             cHHHHHHHHhccc
Q 033417          104 NVKVVILCSGSHP  116 (119)
Q Consensus       104 ~~~a~~~~a~~~~  116 (119)
                      ++.+|+.+|.++.
T Consensus       185 ~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         185 NGQPYNQLAILAS  197 (497)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH
Confidence            9999999999874

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=2.6e-08  Score=63.08  Aligned_cols=77  Identities=16%  Similarity=0.099  Sum_probs=69.2

Q ss_pred             HHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH----
Q 033417           22 AIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEA----   97 (119)
Q Consensus        22 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a----   97 (119)
                      ....+.+....++...+..+...|  ++++|+..+++++.+    +|.+..+|.+++.++..+|++.+|+..|+++    
T Consensus        58 ~r~~l~~~~~~a~~~la~~~~~~g--~~~~Al~~~~~al~~----~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          58 FATALVEDKVLAHTAKAEAEIACG--RASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            334556778899999999999999  999999999999999    9999999999999999999999999999998    


Q ss_pred             ---HHhCCCc
Q 033417           98 ---LKLCPTN  104 (119)
Q Consensus        98 ---l~l~p~~  104 (119)
                         +.++|..
T Consensus       132 ~~eLG~~P~~  141 (179)
T d2ff4a2         132 ADDLGIDPGP  141 (179)
T ss_dssp             HHHHSCCCCH
T ss_pred             HHHhCCCcCH
Confidence               4567753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=6e-08  Score=55.09  Aligned_cols=65  Identities=9%  Similarity=0.055  Sum_probs=54.8

Q ss_pred             hhHHHHHHHHHhcHH-------HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhc
Q 033417           15 SEKADLDAIAALKES-------AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      +++.-++++..+.|.       .+..+.++|.++++.|  ++++|+..|+++|++    +|+++.++.|++.+...++
T Consensus        23 ~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g--~~~~A~~~y~~aL~l----~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          23 HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG--DLDKALLLTKKLLEL----DPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC--ChHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhC
Confidence            456667777666554       4788999999999999  999999999999999    9999999999988765543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.68  E-value=9e-08  Score=64.05  Aligned_cols=94  Identities=9%  Similarity=-0.056  Sum_probs=80.4

Q ss_pred             ChhhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC---------------------------
Q 033417           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL---------------------------   65 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---------------------------   65 (119)
                      .++++..+.+..+.+|+++..+...|..++..|  ++++|+..|++++++.|.                           
T Consensus        12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G--~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~   89 (264)
T d1zbpa1          12 LQQALELLIEAIKASPKDASLRSSFIELLCIDG--DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT   89 (264)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence            567889999999999999999999999999999  999999999999998553                           


Q ss_pred             ----CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Q 033417           66 ----SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTNVKVV  108 (119)
Q Consensus        66 ----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                          ..|.....+...+.++...|++++|+..+.++.++.|..+..+
T Consensus        90 ~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             hhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence                2455566777778888888999999999999999988765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=6.1e-08  Score=64.94  Aligned_cols=100  Identities=16%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             hhhHHHHHHHHHh------cHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCC--CcccHHHHHHHHHHHHH-h
Q 033417           14 ESEKADLDAIAAL------KESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLL-L   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~-l   84 (119)
                      +++.+.+.++..+      .++.+..+.+.|.++.+.|  ++++|+..|.+++.+.+..  ......++.++|.++.. +
T Consensus        54 ~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  131 (290)
T d1qqea_          54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL  131 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHH
Confidence            4455556655554      3455667777787777777  7888888887777762221  11224556666666544 4


Q ss_pred             cCHHHHHHHHHHHHHhCCC------cHHHHHHHHhcc
Q 033417           85 GNYRRALTDTEEALKLCPT------NVKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~------~~~a~~~~a~~~  115 (119)
                      |++++|+..+++++++.+.      ...++..+|.++
T Consensus       132 ~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~  168 (290)
T d1qqea_         132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence            6777777777776665321      234455555554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=6.2e-08  Score=64.88  Aligned_cols=86  Identities=16%  Similarity=0.086  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccC--CCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN-  104 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-  104 (119)
                      +.-++.|...|+.+...+  +|++|+..|.+++++...  ..+.....|.+.|.||.++|++++|+..+++++++.+.. 
T Consensus        34 ~~Aa~~y~~aa~~y~~~~--~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~  111 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRK--ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG  111 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence            334667888899998888  999999999999987322  134556899999999999999999999999999986544 


Q ss_pred             -----HHHHHHHHhcc
Q 033417          105 -----VKVVILCSGSH  115 (119)
Q Consensus       105 -----~~a~~~~a~~~  115 (119)
                           ..++..+|.++
T Consensus       112 ~~~~~~~~~~~l~~~~  127 (290)
T d1qqea_         112 QFRRGANFKFELGEIL  127 (290)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhH
Confidence                 56677777665

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2.2e-07  Score=61.59  Aligned_cols=86  Identities=13%  Similarity=-0.034  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--
Q 033417           28 ESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRALTDTEEALKLCPTN--  104 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--  104 (119)
                      +-.++...-+|.+++..|  ++++|+..|+++++..|...+ ....++..+|.++..+|++++|+..+++++++.|..  
T Consensus         9 ~~~ae~~~lrA~~~~~~g--~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDG--NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             chhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            345666667899999999  899999999999999433211 124578889999999999999999999999875432  


Q ss_pred             ----HHHHHHHHhcc
Q 033417          105 ----VKVVILCSGSH  115 (119)
Q Consensus       105 ----~~a~~~~a~~~  115 (119)
                          ..+++.++.++
T Consensus        87 ~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          87 WHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence                34445555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=2.7e-07  Score=61.10  Aligned_cols=84  Identities=14%  Similarity=0.055  Sum_probs=44.7

Q ss_pred             HHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC
Q 033417           30 AAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRALTDTEEALKL------CPT  103 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l------~p~  103 (119)
                      .+..+...|..+...|  ++++|...+.+++...+...+.....+.++|.++..+|++++|+..+++++.+      .|.
T Consensus       212 ~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTG--DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            3444455555555555  56666666666555544433444445555566666666666666666655532      234


Q ss_pred             cHHHHHHHHhcc
Q 033417          104 NVKVVILCSGSH  115 (119)
Q Consensus       104 ~~~a~~~~a~~~  115 (119)
                      ...++..+|.+|
T Consensus       290 ~~~~~~~la~~~  301 (366)
T d1hz4a_         290 LNRNLLLLNQLY  301 (366)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445555555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.2e-05  Score=53.80  Aligned_cols=93  Identities=9%  Similarity=0.026  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHH-hcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccH-HHHHHHHHHHHHhcCHHHHHH
Q 033417           15 SEKADLDAIAA-LKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRALT   92 (119)
Q Consensus        15 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++...+++... ..|++...+...+......|  +++.|...|.+++..    .|.+. .+|...+....+.|.++.|+.
T Consensus        82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~--~~~~a~~i~~~~l~~----~~~~~~~~w~~~~~~~~~~~~~~~ar~  155 (308)
T d2onda1          82 EAANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH----hcCChHHHHHHHHHHHHHcCChHHHHH
Confidence            34445555554 35666666777777777777  778888888887777    66553 356677777777777777777


Q ss_pred             HHHHHHHhCCCcHHHHHHHHh
Q 033417           93 DTEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~  113 (119)
                      .++++++..|.....+...|.
T Consensus       156 i~~~al~~~~~~~~~~~~~a~  176 (308)
T d2onda1         156 IFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             HHHHHHTSTTCCTHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHH
Confidence            777777777777766666554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.13  E-value=1.3e-05  Score=52.07  Aligned_cols=75  Identities=16%  Similarity=0.071  Sum_probs=62.5

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCcHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKLCPTNVK  106 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +.++.++|..+++.+  |+.+|+..|+++.+.      .++.+++++|.++..    ..++..|+..++.+....  ++.
T Consensus         2 p~~~~~lG~~~~~~~--d~~~A~~~~~kAa~~------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~   71 (265)
T d1ouva_           2 PKELVGLGAKSYKEK--DFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN   71 (265)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccc
Confidence            568999999999998  999999999999877      467889999999987    568999999999877654  667


Q ss_pred             HHHHHHhcc
Q 033417          107 VVILCSGSH  115 (119)
Q Consensus       107 a~~~~a~~~  115 (119)
                      +...+|..+
T Consensus        72 a~~~l~~~~   80 (265)
T d1ouva_          72 GCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhcccccc
Confidence            777666544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.4e-05  Score=53.49  Aligned_cols=95  Identities=11%  Similarity=0.014  Sum_probs=59.7

Q ss_pred             hhhHHHHHHHHHhcHHHH-HHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH-hcCHHHHH
Q 033417           14 ESEKADLDAIAALKESAA-IELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL-LGNYRRAL   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~   91 (119)
                      +++...++++....|.+. ..|...+....+.|  +++.|...|.+++..    .|.....+...|..... .|+.+.|.
T Consensus       116 ~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~--~~~~ar~i~~~al~~----~~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE--GIKSGRMIFKKARED----ARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH--CHHHHHHHHHHHHTS----TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhccCHHHHH
Confidence            344555666655555443 34566666666666  677777777777777    66666666666655433 46677777


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHhc
Q 033417           92 TDTEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ..++++++..|+++..+...+..
T Consensus       190 ~i~e~~l~~~p~~~~~w~~y~~~  212 (308)
T d2onda1         190 KIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHH
Confidence            77777777777776666655543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=6e-05  Score=44.57  Aligned_cols=64  Identities=19%  Similarity=-0.008  Sum_probs=53.6

Q ss_pred             hhhHHHHHHHHHhcHHH-HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH
Q 033417           14 ESEKADLDAIAALKESA-AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL   83 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~   83 (119)
                      .+.+..++.+...+|.+ .+.++.+|..+++.|  +|+.|...+.++|++    +|++..+...+-.+.-+
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg--dy~~A~~~~~~~L~i----eP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHH
Confidence            45677788888888765 589999999999999  999999999999999    99999887766655433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.41  E-value=0.003  Score=36.80  Aligned_cols=64  Identities=17%  Similarity=0.127  Sum_probs=38.8

Q ss_pred             HHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Q 033417           30 AAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALKLC  101 (119)
Q Consensus        30 ~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~  101 (119)
                      ++.+...+|..++.    ..  ++.+|+..|+++.+.      .++.+.+++|.+|..    ..++.+|+..|+++.++.
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa~~------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             chhhhhhHHHhhhhccccch--hhHHHHHHHhhhhcc------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            45556666666654    22  566677777776665      345556666666665    345666777777666654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.39  E-value=0.00051  Score=44.23  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhHHHHH----hchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 033417           28 ESAAIELKEKGNEYVK----KGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRALTDTEEALK   99 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~   99 (119)
                      +.++.++.+.|..+..    ..  ++++|+..|.++.+.      .++.+.+++|.+|..    .+++.+|+..++++.+
T Consensus       175 ~g~~~A~~~lg~~y~~g~~~~~--d~~~A~~~~~~aa~~------g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~  246 (265)
T d1ouva_         175 LKDSPGCFNAGNMYHHGEGATK--NFKEALARYSKACEL------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK  246 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             ccccccccchhhhcccCccccc--chhhhhhhHhhhhcc------cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            3356667777777665    33  677777777777766      346667777777764    2367777777777777


Q ss_pred             hCC
Q 033417          100 LCP  102 (119)
Q Consensus       100 l~p  102 (119)
                      ..+
T Consensus       247 ~g~  249 (265)
T d1ouva_         247 LGA  249 (265)
T ss_dssp             HTC
T ss_pred             CcC
Confidence            654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.19  E-value=0.0011  Score=38.69  Aligned_cols=88  Identities=7%  Similarity=-0.085  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHhcHHHHHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHH----hcCHHHH
Q 033417           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRA   90 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A   90 (119)
                      +++.-+.+.....  ++.+...+|..  ...  ++++|+..|.++.+.      .++.+.+++|.+|..    ..++.+|
T Consensus        11 ~A~~~~~kaa~~g--~~~a~~~l~~~--~~~--~~~~a~~~~~~aa~~------g~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_          11 KAIQYYVKACELN--EMFGCLSLVSN--SQI--NKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHTT--CTTHHHHHHTC--TTS--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             HHHHHHHHHHHCC--Chhhhhhhccc--ccc--CHHHHHHHHhhhhcc------cchhhhhhHHHhhhhccccchhhHHH
Confidence            4445555544433  23444444432  223  789999999999887      578888999999886    4579999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHhccc
Q 033417           91 LTDTEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +..++++.+.  .++.+.+.+|.+|.
T Consensus        79 ~~~~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          79 AQYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHhhhhcc--CcchHHHHHHHHHH
Confidence            9999999886  47999999998875

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.31  E-value=0.15  Score=27.20  Aligned_cols=29  Identities=24%  Similarity=0.269  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           71 SVLYANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +-.+-.+|.-+++.|+|++||++.+++..
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56777888899999999999998887654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.63  E-value=0.27  Score=26.75  Aligned_cols=30  Identities=23%  Similarity=0.496  Sum_probs=24.6

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|..+-..|  +|++|+.+|.++|+.
T Consensus        15 A~~l~~~Av~~D~~g--~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          15 AVAVLKRAVELDAES--RYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            556677777788888  899999999999876

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.65  E-value=0.52  Score=33.28  Aligned_cols=53  Identities=19%  Similarity=0.199  Sum_probs=47.1

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHhcCHHH
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      ++.+.+.+...+..|  +|.-|+.+.+.++..    +|++..+...++.++.++|.-.+
T Consensus       430 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~a----~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         430 AERLLEQARASYARG--EYRWVVEVVNRLVFA----EPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHhCc
Confidence            677888999999988  999999999999999    99999999999999988875544

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.20  E-value=1.1  Score=23.24  Aligned_cols=30  Identities=33%  Similarity=0.537  Sum_probs=22.1

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...=..|  +|++|+.+|..+++.
T Consensus        11 A~~l~~~Av~~D~~~--~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1          11 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHTT--CCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            555666677777777  788888888888765

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.71  E-value=1.1  Score=24.08  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 033417           74 YANRAHVNLLLGNYRRALTDTEEALK   99 (119)
Q Consensus        74 ~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +...|.-+-..|+|++|+..|.++++
T Consensus        18 l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          18 VLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555556777777777766655

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.35  E-value=1.7  Score=22.92  Aligned_cols=30  Identities=23%  Similarity=0.466  Sum_probs=22.7

Q ss_pred             HHHHHHHhHHHHHhchHhHHHHHHHHHHHHhc
Q 033417           31 AIELKEKGNEYVKKGKKHYYDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +--+-..+..+.+.|  .|++||+++.++...
T Consensus         8 AH~~~RrAer~l~~~--rydeAIech~kA~~y   37 (83)
T d2crba1           8 AHQQSRRADRLLAAG--KYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            344556778888888  799999998877654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=80.61  E-value=3.4  Score=26.03  Aligned_cols=51  Identities=16%  Similarity=0.038  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhc----ccCCCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Q 033417           49 YYDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLL-LGNYRRALTDTEEALK   99 (119)
Q Consensus        49 ~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~   99 (119)
                      -+.|...|+.|+.+    .+..+|..-.+..|.+..++. +++.++|+..++++++
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35677888888765    233366666777788887775 5999999999998875