Citrus Sinensis ID: 033418

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccEEEcEEEEEEcccccHHHHHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccEEEccccccEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHHHHHcccccccccEEEEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHcccHHHHHHHHHHHHHcccEEccccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
mrllthnmlssnikgvangFPLLIEVEKVIEKQVdfnpdflknifpKIEWQALVQASRsmgyselpeespessmldsddfLMKFHHLHLeegalvcpetgrkfpvnkgipnmllhedev
Flexible Loop (DISEMBL)
MRLLTHNmlssnikgvanGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALvcpetgrkfpvnkgipnmllhedev
Low Complexity Region (SEG)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYselpeespessmldsddFLMKFHHLHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV
Disordered region (IsUnstruct)
*********SSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQ***********************DFLMKFHHLHLEEGALVCPETGRKFPVNK************
Disordered Region (DISOPRED)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEE****SMLDSDDFLMKFHHLHLEEGALVCPETGRKFPVNKGIPNMLLHE***
Disordered Region (DISEMBL)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS*****************LDSDDFLMKFHHLHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV
Disordered Region (DISPRO)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETGRKFPVNKGIPNMLLH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFLMKFHHLHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9C9R3	124	TRM112-like protein At1g7	yes	no	1.0	0.959	0.685	5e-44
Q8LFJ5	124	TRM112-like protein At1g2	no	no	1.0	0.959	0.709	1e-40
Q9DCG9	125	tRNA methyltransferase 11	yes	no	0.991	0.944	0.483	2e-27
Q2KIA2	125	tRNA methyltransferase 11	yes	no	0.991	0.944	0.467	1e-25
Q9UI30	125	tRNA methyltransferase 11	yes	no	0.991	0.944	0.443	1e-24
Q9VP65	124	TRM112-like protein OS=Dr	yes	no	0.991	0.951	0.456	5e-18
Q09723	126	Multifunctional methyltra	yes	no	0.991	0.936	0.393	1e-17
Q54N57	128	TRM112-like protein OS=Di	yes	no	0.983	0.914	0.370	5e-17
O45241	125	TRM112-like protein OS=Ca	yes	no	0.949	0.904	0.378	5e-16
Q8X0S4	127	Protein trm-112 OS=Neuros	N/A	no	0.957	0.897	0.352	4e-14

>sp|Q9C9R3|T112B_ARATH TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1

 Score =  176 bits (445), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 102/124 (82%), Gaps = 5/124 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRL+ HNMLS NIKGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM
Sbjct: 1   MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query: 61  GYSELPEESPESSMLDSDD-FLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLH 115
            Y+ELP+ +P+++ L+SD+ FL KFHH    LHLEEG+LVCPETGRKF V+KGIPNMLLH
Sbjct: 61  EYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLH 120

Query: 116 EDEV 119
           EDEV
Sbjct: 121 EDEV 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFJ5|T112A_ARATH TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 105/124 (84%), Gaps = 5/124 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1   MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61  GYSELPEESPESSMLDSDDFLMK-----FHHLHLEEGALVCPETGRKFPVNKGIPNMLLH 115
           GY+ELPEESP++++L SD+  +K        LHLEEGALVCPETGRKFPVNKGIPNMLLH
Sbjct: 61  GYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLH 120

Query: 116 EDEV 119
           EDEV
Sbjct: 121 EDEV 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q9DCG9|TR112_MOUSE tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 6/124 (4%)

Query: 1   MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
           M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ +
Sbjct: 1   MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60

Query: 60  MGYSELPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
           +  +E+P+E  E    D + FL K HH+ LE    EG L CPE+GR FP+++GIPNMLL+
Sbjct: 61  LNLAEVPKEPTEGYEHD-ETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLN 119

Query: 116 EDEV 119
           ++E 
Sbjct: 120 DEET 123

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Mus musculus (taxid: 10090)

>sp|Q2KIA2|TR112_BOVIN tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 86/124 (69%), Gaps = 6/124 (4%)

Query: 1   MRLLTHNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
           MRLLTHN+LSS+++GV   GFPL ++  +V    V+FNPDF+  + PK+EW AL++A+  
Sbjct: 1   MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADH 60

Query: 60  MGYSELPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
           +   ++P+E P      +++FL K HH+ LE    EG L CPE+GR FP+++GIPNMLL 
Sbjct: 61  LHLIQVPKE-PIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIPNMLLS 119

Query: 116 EDEV 119
           ++E 
Sbjct: 120 DEET 123

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Bos taurus (taxid: 9913)

>sp|Q9UI30|TR112_HUMAN tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 86/124 (69%), Gaps = 6/124 (4%)

Query: 1   MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
           M+LLTHN+LSS+++GV + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ +
Sbjct: 1   MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60

Query: 60  MGYSELPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
           +   ++P+  P     ++++FL   HHL LE    EG L CPE+GR FP+++GIPNMLL 
Sbjct: 61  LRLIQVPK-GPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLS 119

Query: 116 EDEV 119
           E+E 
Sbjct: 120 EEET 123

Participates both in methylation of protein and tRNA species. The heterodimer with HEMK2/N6AMT1 catalyzes N5-methylation of ETF1 on 'Gln-185', using S-adenosyl L-methionine as methyl donor. The heterodimer with ALKBH8 catalyzes the methylation of 5-carboxymethyl uridine to 5-methylcarboxymethyl uridine at the wobble position of the anticodon loop in target tRNA species.

Homo sapiens (taxid: 9606)

>sp|Q9VP65|TR112_DROME TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 82/125 (65%), Gaps = 7/125 (5%)

Query: 1   MRLLTHNMLSS-NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
           M+L T+N L+S  IKGV  GFPL + + K    + +FNP F++ I PK++W A+  A++ 
Sbjct: 1   MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQV 60

Query: 60  MGYSE-LPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLL 114
              +E +P   PE ++++++  L K HHL  E    EG L CPETGR FP++ GIPNMLL
Sbjct: 61  AELTEDIPAVQPE-NIVENELLLQKLHHLLFEIDVLEGQLECPETGRVFPISDGIPNMLL 119

Query: 115 HEDEV 119
           +EDEV
Sbjct: 120 NEDEV 124

Drosophila melanogaster (taxid: 7227)

>sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm112 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 9/127 (7%)

Query: 1   MRLLTHNMLSSNIKGVAN---GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
           M+LLT N L+ + K   +    FPL +   K+  +Q++  P+FL  I P+I+W AL++ +
Sbjct: 1   MKLLTANFLNCSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTT 60

Query: 58  RSMGYSELPEESPESSMLDSDDFLMK-FHHLHLE----EGALVCPETGRKFPVNKGIPNM 112
           R +G   LP+E P+  + DSD+ L+K  H++ LE    EG +VC   G  +P+ +GIPNM
Sbjct: 61  RQLGNYSLPDEKPD-LVDDSDEVLLKSLHNVLLETEITEGKMVCGNCGHVYPIFEGIPNM 119

Query: 113 LLHEDEV 119
           LL E E+
Sbjct: 120 LLSESEI 126

Together with mtq2, required for the methylation of eRF1 on 'Gln-182'. Together with trm11, required for the formation of 2-methylguanosine at position 10 in tRNA. Probably has additional functions.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54N57|TR112_DICDI TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 7/124 (5%)

Query: 1   MRLLTHNMLSSNIK-GVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
           M++LTHNM++   K  +  GFPL +E  + I  + +FN +F KNI+PK++W  + + S  
Sbjct: 1   MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQEFNYEFTKNIYPKLDWLGIAEISIK 60

Query: 60  MGYSELPEESPESSMLDSDDFLMKFHHL----HLEEGALVCPETGRKFPVNKGIPNMLLH 115
                  + +  S  L+ ++FL   H+L     +  G+L CP   R +P++KGIPNMLL 
Sbjct: 61  FNIPIQLDTTKHS--LEDEEFLKTLHNLLCNLKVITGSLTCPNCQRVYPIDKGIPNMLLR 118

Query: 116 EDEV 119
           EDE+
Sbjct: 119 EDEI 122

Dictyostelium discoideum (taxid: 44689)

>sp|O45241|TR112_CAEEL TRM112-like protein OS=Caenorhabditis elegans GN=C04H5.1 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 6/119 (5%)

Query: 1   MRLLTHNMLSSN-IKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
           M+L  HN +SS  +K V  G+PL + V++ +EK ++F+ D    +  +I+++AL+ A+ +
Sbjct: 1   MKLFVHNFMSSRFLKNVTVGYPLNLVVKQFVEKDIEFDRDNTIVMLDRIQYEALIVAAAA 60

Query: 60  MGYSE-LPEESPESSMLDSDDFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNML 113
           +  S+ +P E PE     +D+ L  FHHL +     +G L+CPET   FP+  GIPNML
Sbjct: 61  VNQSDRIPREKPEKWDELTDEQLRVFHHLLMNIDVIDGELICPETKTVFPIRDGIPNML 119

Caenorhabditis elegans (taxid: 6239)

>sp|Q8X0S4|TR112_NEUCR Protein trm-112 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=trm-112 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 8/122 (6%)

Query: 1   MRLLTHNMLSS---NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
           M+++T N L+    N K   + FPL  +  ++ +  ++ NP  L N+ P+I+W AL   S
Sbjct: 1   MKVMTLNFLTCAVKNCKSSNDSFPLHPKEAELAKDDIEINPQLLINVLPRIDWAALRTTS 60

Query: 58  RSMGYSELPEESPESSMLDSDDFLMK-FHHLHLE----EGALVCPETGRKFPVNKGIPNM 112
             +G+  LPE+ P    L SD+ L+K  H L +E    EG LVC   G ++ V  G+ N 
Sbjct: 61  TELGFPTLPEQPPSPEDLQSDEALLKELHELLMETQMMEGKLVCGHCGHEYAVKNGVANF 120

Query: 113 LL 114
           LL
Sbjct: 121 LL 122

Required for the formation of 2-methylguanosine at position 10 in tRNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
255579320	122	Protein trm112, putative [Ricinus commun	0.991	0.967	0.788	1e-49
225452543	122	PREDICTED: TRM112-like protein At1g78190	0.991	0.967	0.780	1e-49
449469867	122	PREDICTED: TRM112-like protein At1g78190	0.991	0.967	0.796	1e-48
357448337	122	TRM112-like protein [Medicago truncatula	0.991	0.967	0.764	8e-47
217075881	122	unknown [Medicago truncatula]	0.991	0.967	0.756	3e-46
351727645	122	uncharacterized protein LOC100500562 [Gl	0.991	0.967	0.739	9e-46
224082123	115	predicted protein [Populus trichocarpa]	0.932	0.965	0.758	1e-44
356535721	122	PREDICTED: TRM112-like protein At1g78190	0.991	0.967	0.715	5e-44
224066951	122	predicted protein [Populus trichocarpa]	0.991	0.967	0.780	4e-43
15218237	124	Trm1.2-like protein [Arabidopsis thalian	1.0	0.959	0.685	2e-42

>gi|255579320|ref|XP_002530505.1| Protein trm112, putative [Ricinus communis] gi|223529962|gb|EEF31889.1| Protein trm112, putative [Ricinus communis]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/123 (78%), Positives = 112/123 (91%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRLLTHNMLSSNIKGVANGFPL IEV+KVIEK+VDFNPDFLKN+F KIEW+ALV A+R+M
Sbjct: 1   MRLLTHNMLSSNIKGVANGFPLRIEVQKVIEKEVDFNPDFLKNMFSKIEWKALVDAARTM 60

Query: 61  GYSELPEESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY+ELP ++ ESSML+S++F+ KFHH    + LEEGAL+CPETGRKFPVNKGIPNMLLHE
Sbjct: 61  GYTELP-DAAESSMLESEEFMRKFHHALLEVDLEEGALICPETGRKFPVNKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452543|ref|XP_002280169.1| PREDICTED: TRM112-like protein At1g78190 [Vitis vinifera] gi|296087709|emb|CBI34965.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 110/123 (89%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRLLTHNMLSSNIKGV NGFPL +EVEK++EKQVDFN DFLKN+F KIEW+AL  A+++M
Sbjct: 1   MRLLTHNMLSSNIKGVTNGFPLRVEVEKMVEKQVDFNADFLKNMFTKIEWKALFDAAQTM 60

Query: 61  GYSELPEESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY++LP E+ ESSMLDSD+FL KFHH    LHLEEGAL+CPETGR+FPVNKGIPNMLLHE
Sbjct: 61  GYTDLPAEA-ESSMLDSDEFLKKFHHALLELHLEEGALICPETGRRFPVNKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469867|ref|XP_004152640.1| PREDICTED: TRM112-like protein At1g78190-like [Cucumis sativus] gi|449503943|ref|XP_004162234.1| PREDICTED: TRM112-like protein At1g78190-like [Cucumis sativus]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/123 (79%), Positives = 108/123 (87%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRLLTHNMLSSNIKGV NGFPL IEVEKV+EK VDFNPDFLKN+F KIEW+ LV ASR+M
Sbjct: 1   MRLLTHNMLSSNIKGVINGFPLRIEVEKVVEKPVDFNPDFLKNMFSKIEWKPLVDASRTM 60

Query: 61  GYSELPEESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY+ELPEE+ ++SMLDS DFL +FHH    LHLEEGAL CPET R+FPVNKGIPNMLLHE
Sbjct: 61  GYAELPEEA-DASMLDSHDFLQRFHHALLELHLEEGALFCPETNRRFPVNKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448337|ref|XP_003594444.1| TRM112-like protein [Medicago truncatula] gi|355483492|gb|AES64695.1| TRM112-like protein [Medicago truncatula]

 Score =  190 bits (483), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 94/123 (76%), Positives = 106/123 (86%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRLLTHNMLSSNIKGV NGFPL IE EKV+EK V+ N DFLK +F KIEW+A V+ASR M
Sbjct: 1   MRLLTHNMLSSNIKGVVNGFPLRIEAEKVVEKNVEMNGDFLKKMFEKIEWKAFVEASRGM 60

Query: 61  GYSELPEESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY+ELPEE+ +SSMLDS++FL +FHH    LHLEEGALVCPETGR+FPV KGIPNMLLHE
Sbjct: 61  GYTELPEEA-DSSMLDSNEFLNRFHHALLELHLEEGALVCPETGRRFPVKKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075881|gb|ACJ86300.1| unknown [Medicago truncatula]

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/123 (75%), Positives = 106/123 (86%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRLLTHNMLSS+IKGV NGFPL IE EKV+EK V+ N DFLK +F KIEW+A V+ASR M
Sbjct: 1   MRLLTHNMLSSSIKGVVNGFPLRIEAEKVVEKNVEMNGDFLKKMFEKIEWKAFVEASRGM 60

Query: 61  GYSELPEESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY+ELPEE+ +SSMLDS++FL +FHH    LHLEEGALVCPETGR+FPV KGIPNMLLHE
Sbjct: 61  GYTELPEEA-DSSMLDSNEFLNRFHHALLELHLEEGALVCPETGRRFPVKKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727645|ref|NP_001236144.1| uncharacterized protein LOC100500562 [Glycine max] gi|255630635|gb|ACU15677.1| unknown [Glycine max]

 Score =  187 bits (474), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 91/123 (73%), Positives = 106/123 (86%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRL+THNMLSSNIKGV NGFPL IE EKV+EK V+ N +FLK +F KI+W+A V ASR+M
Sbjct: 1   MRLITHNMLSSNIKGVVNGFPLRIEAEKVVEKTVEMNGEFLKKMFEKIDWKAFVDASRAM 60

Query: 61  GYSELPEESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY+ELPEE+ +SSMLDSD+FL +FHH    LHLEEG LVCPETGR+FPV+KGIPNMLLHE
Sbjct: 61  GYTELPEEA-DSSMLDSDEFLNRFHHALLELHLEEGVLVCPETGRRFPVSKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082123|ref|XP_002306574.1| predicted protein [Populus trichocarpa] gi|222856023|gb|EEE93570.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 104/116 (89%), Gaps = 5/116 (4%)

Query: 8   MLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPE 67
           MLSSNIKGV+NGFPL IEVE+V+EKQVDFNPDF+KN+FPK+EW+ALV  +R++GY+ELPE
Sbjct: 1   MLSSNIKGVSNGFPLRIEVEQVLEKQVDFNPDFVKNLFPKLEWKALVDGARTLGYAELPE 60

Query: 68  ESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV 119
           E+ +SSML+S++FL K HH    LHLEEGAL CPETGRKFPV KGIPNMLLHEDEV
Sbjct: 61  EA-DSSMLESEEFLRKVHHALLELHLEEGALTCPETGRKFPVTKGIPNMLLHEDEV 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535721|ref|XP_003536392.1| PREDICTED: TRM112-like protein At1g78190-like [Glycine max]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/123 (71%), Positives = 105/123 (85%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRL+THNMLSSNIKGV NGFPL IE EKV+EK ++ N +FL+ +F K++W+A V ASR+M
Sbjct: 1   MRLITHNMLSSNIKGVVNGFPLRIEAEKVMEKTMEMNSEFLEKMFEKVDWKAFVDASRAM 60

Query: 61  GYSELPEESPESSMLDSDDFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY+ELPEE+  SSMLDSD+FL +FHH    L LEEGALVCPETGR+FPV+KGIPNMLLHE
Sbjct: 61  GYTELPEEA-NSSMLDSDEFLNRFHHALLELDLEEGALVCPETGRRFPVSKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066951|ref|XP_002302295.1| predicted protein [Populus trichocarpa] gi|222844021|gb|EEE81568.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 111/123 (90%), Gaps = 5/123 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRL THNMLSSNIKGVANGFPL IEV++V+EKQVDFNPDFL+N+FPK+EW+ALV A+R+M
Sbjct: 1   MRLFTHNMLSSNIKGVANGFPLRIEVDQVVEKQVDFNPDFLRNMFPKLEWKALVDAARTM 60

Query: 61  GYSELPEESPESSMLDSDDFLMK----FHHLHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
           GY+ELPEE+ +SSML+S++FL K       LHLEEGALVCPETGRKFPVNKGIPNMLLHE
Sbjct: 61  GYTELPEEA-DSSMLESEEFLRKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHE 119

Query: 117 DEV 119
           DEV
Sbjct: 120 DEV 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218237|ref|NP_177943.1| Trm1.2-like protein [Arabidopsis thaliana] gi|47606209|sp|Q9C9R3.1|T112B_ARATH RecName: Full=TRM112-like protein At1g78190 gi|12324252|gb|AAG52099.1|AC012680_10 unknown protein; 53758-53384 [Arabidopsis thaliana] gi|332197958|gb|AEE36079.1| Trm1.2-like protein [Arabidopsis thaliana]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 102/124 (82%), Gaps = 5/124 (4%)

Query: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
           MRL+ HNMLS NIKGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM
Sbjct: 1   MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query: 61  GYSELPEESPESSMLDSDD-FLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLH 115
            Y+ELP+ +P+++ L+SD+ FL KFHH    LHLEEG+LVCPETGRKF V+KGIPNMLLH
Sbjct: 61  EYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLH 120

Query: 116 EDEV 119
           EDEV
Sbjct: 121 EDEV 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2196536	124	AT1G22270 "AT1G22270" [Arabido	1.0	0.959	0.661	2.1e-38
TAIR|locus:2194724	124	AT1G78190 "AT1G78190" [Arabido	1.0	0.959	0.629	2.4e-35
RGD|1309710	125	Trmt112 "tRNA methyltransferas	0.983	0.936	0.455	6.8e-24
MGI|MGI:1914924	125	Trmt112 "tRNA methyltransferas	0.983	0.936	0.447	1.8e-23
UNIPROTKB|Q9UI30	125	TRMT112 "tRNA methyltransferas	0.983	0.936	0.430	1.5e-21
FB|FBgn0037061	124	CG12975 [Drosophila melanogast	1.0	0.959	0.427	7.2e-20
DICTYBASE|DDB_G0285489	128	DDB_G0285489 "TRM112 family pr	0.974	0.906	0.368	1.1e-16
POMBASE|SPAC31A2.02	126	trm112 "protein and tRNA methy	1.0	0.944	0.349	4.9e-14
GENEDB_PFALCIPARUM|PF14_0072	125	PF14_0072 "hypothetical protei	0.932	0.888	0.327	1e-13
UNIPROTKB|Q8IM19	125	PF14_0072 "Nucleolar preriboso	0.932	0.888	0.327	1e-13

TAIR|locus:2196536 AT1G22270 "AT1G22270" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 82/124 (66%), Positives = 92/124 (74%)

Query:     1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
             MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct:     1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query:    61 GYXXXXXXXXXXXXXXXXX-FLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLH 115
             GY                  FL K HH    LHLEEGALVCPETGRKFPVNKGIPNMLLH
Sbjct:    61 GYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLH 120

Query:   116 EDEV 119
             EDEV
Sbjct:   121 EDEV 124

GO:0003674 "molecular_function" evidence=ND

GO:0035265 "organ growth" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2194724 AT1G78190 "AT1G78190" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 78/124 (62%), Positives = 87/124 (70%)

Query:     1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
             MRL+ HNMLS NIKGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM
Sbjct:     1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query:    61 GYXXXXXXX-XXXXXXXXXXFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPNMLLH 115
              Y                  FL KFHH    LHLEEG+LVCPETGRKF V+KGIPNMLLH
Sbjct:    61 EYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLH 120

Query:   116 EDEV 119
             EDEV
Sbjct:   121 EDEV 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1309710 Trmt112 "tRNA methyltransferase 11-2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 56/123 (45%), Positives = 79/123 (64%)

Query:     1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
             M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNPDF+  + PK+EW ALVQA+ +
Sbjct:     1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPDFVARMIPKVEWAALVQAADT 60

Query:    60 MGYXXXXXXXXXXXXXXXXXFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
             +                   FL K HH+ LE    EG L CPE+GR FP+++GIPNMLL+
Sbjct:    61 LNLAEVPKEPTEGYEHDET-FLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLN 119

Query:   116 EDE 118
             ++E
Sbjct:   120 DEE 122

GO:0008276 "protein methyltransferase activity" evidence=ISO

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

MGI|MGI:1914924 Trmt112 "tRNA methyltransferase 11-2" [Mus musculus (taxid:10090)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 55/123 (44%), Positives = 79/123 (64%)

Query:     1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
             M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ +
Sbjct:     1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60

Query:    60 MGYXXXXXXXXXXXXXXXXXFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
             +                   FL K HH+ LE    EG L CPE+GR FP+++GIPNMLL+
Sbjct:    61 LNLAEVPKEPTEGYEHDET-FLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLN 119

Query:   116 EDE 118
             ++E
Sbjct:   120 DEE 122

GO:0008276 "protein methyltransferase activity" evidence=ISO

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|Q9UI30 TRMT112 "tRNA methyltransferase 112 homolog" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 53/123 (43%), Positives = 77/123 (62%)

Query:     1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
             M+LLTHN+LSS+++GV + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ +
Sbjct:     1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60

Query:    60 MGYXXXXXXXXXXXXXXXXXFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
             +                   FL   HHL LE    EG L CPE+GR FP+++GIPNMLL 
Sbjct:    61 LRLIQVPKGPVEGYEENEE-FLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLS 119

Query:   116 EDE 118
             E+E
Sbjct:   120 EEE 122

GO:0005515 "protein binding" evidence=IPI

GO:0018364 "peptidyl-glutamine methylation" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

FB|FBgn0037061 CG12975 [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 53/124 (42%), Positives = 70/124 (56%)

Query:     1 MRLLTHNMLSS-NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
             M+L T+N L+S  IKGV  GFPL + + K    + +FNP F++ I PK++W A+  A++ 
Sbjct:     1 MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQV 60

Query:    60 MGYXXXXXXXXXXXXXXXXXFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNMLLH 115
                                  L K HHL  E    EG L CPETGR FP++ GIPNMLL+
Sbjct:    61 AELTEDIPAVQPENIVENELLLQKLHHLLFEIDVLEGQLECPETGRVFPISDGIPNMLLN 120

Query:   116 EDEV 119
             EDEV
Sbjct:   121 EDEV 124

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0285489 DDB_G0285489 "TRM112 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 46/125 (36%), Positives = 73/125 (58%)

Query:     1 MRLLTHNMLSSNIKG-VANGFPLLIE-VEKVIEKQVDFNPDFLKNIFPKIEWQALVQASR 58
             M++LTHNM++   K  +  GFPL +E  E+++ +Q +FN +F KNI+PK++W  + + S 
Sbjct:     1 MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQ-EFNYEFTKNIYPKLDWLGIAEIS- 58

Query:    59 SMGYXXXXXXXXXXXXXXXXXFLMKFHHL--HLE--EGALVCPETGRKFPVNKGIPNMLL 114
              + +                 FL   H+L  +L+   G+L CP   R +P++KGIPNMLL
Sbjct:    59 -IKFNIPIQLDTTKHSLEDEEFLKTLHNLLCNLKVITGSLTCPNCQRVYPIDKGIPNMLL 117

Query:   115 HEDEV 119
              EDE+
Sbjct:   118 REDEI 122

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC31A2.02 trm112 "protein and tRNA methyltransferase regulatory subunit Trm112 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 44/126 (34%), Positives = 67/126 (53%)

Query:     1 MRLLTHNMLS-SNIKGVAN--GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
             M+LLT N L+ SN K  ++   FPL +   K+  +Q++  P+FL  I P+I+W AL++ +
Sbjct:     1 MKLLTANFLNCSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTT 60

Query:    58 RSMGYXXXXXXXXXXXXXXXXXFLMKFHHLHLE----EGALVCPETGRKFPVNKGIPNML 113
             R +G                   L   H++ LE    EG +VC   G  +P+ +GIPNML
Sbjct:    61 RQLGNYSLPDEKPDLVDDSDEVLLKSLHNVLLETEITEGKMVCGNCGHVYPIFEGIPNML 120

Query:   114 LHEDEV 119
             L E E+
Sbjct:   121 LSESEI 126

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0018364 "peptidyl-glutamine methylation" evidence=ISO

GO:0030234 "enzyme regulator activity" evidence=ISO

GO:0030488 "tRNA methylation" evidence=ISO

GO:0035657 "eRF1 methyltransferase complex" evidence=ISO

GO:0043528 "tRNA (m2G10) methyltransferase complex" evidence=ISO

GENEDB_PFALCIPARUM|PF14_0072 PF14_0072 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 40/122 (32%), Positives = 60/122 (49%)

Query:     1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQV-----DFNPDFLKNIFPKIEWQALVQ 55
             MRLLTHN L  N      G+PL I+++   ++ +     D N +F+KN+  K+++  L  
Sbjct:     1 MRLLTHNFLKCNETQCTGGYPLTIKLDMDSQENIKIIDQDINVEFVKNVLSKVDYDVLYN 60

Query:    56 ASRSMGYXXXXXXXXXXXXXXXXXFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPN 111
              ++  G                  FL   HH    +H+ EG+LVCP+    FP+  GIPN
Sbjct:    61 TAKQFGINLLASYNSDHLEDEE--FLNSVHHALFKVHIMEGSLVCPKCNISFPIKDGIPN 118

Query:   112 ML 113
             ML
Sbjct:   119 ML 120

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IM19 PF14_0072 "Nucleolar preribosomal GTPase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 40/122 (32%), Positives = 60/122 (49%)

Query:     1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQV-----DFNPDFLKNIFPKIEWQALVQ 55
             MRLLTHN L  N      G+PL I+++   ++ +     D N +F+KN+  K+++  L  
Sbjct:     1 MRLLTHNFLKCNETQCTGGYPLTIKLDMDSQENIKIIDQDINVEFVKNVLSKVDYDVLYN 60

Query:    56 ASRSMGYXXXXXXXXXXXXXXXXXFLMKFHH----LHLEEGALVCPETGRKFPVNKGIPN 111
              ++  G                  FL   HH    +H+ EG+LVCP+    FP+  GIPN
Sbjct:    61 TAKQFGINLLASYNSDHLEDEE--FLNSVHHALFKVHIMEGSLVCPKCNISFPIKDGIPN 118

Query:   112 ML 113
             ML
Sbjct:   119 ML 120

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09723	TR112_SCHPO	No assigned EC number	0.3937	0.9915	0.9365	yes	no
Q2KIA2	TR112_BOVIN	No assigned EC number	0.4677	0.9915	0.944	yes	no
Q8LFJ5	T112A_ARATH	No assigned EC number	0.7096	1.0	0.9596	no	no
P53738	TR112_YEAST	No assigned EC number	0.3076	0.9579	0.8444	yes	no
Q54N57	TR112_DICDI	No assigned EC number	0.3709	0.9831	0.9140	yes	no
O45241	TR112_CAEEL	No assigned EC number	0.3781	0.9495	0.904	yes	no
Q9UI30	TR112_HUMAN	No assigned EC number	0.4435	0.9915	0.944	yes	no
Q9VP65	TR112_DROME	No assigned EC number	0.456	0.9915	0.9516	yes	no
Q9C9R3	T112B_ARATH	No assigned EC number	0.6854	1.0	0.9596	yes	no
Q9DCG9	TR112_MOUSE	No assigned EC number	0.4838	0.9915	0.944	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam03966	47	pfam03966, Trm112p, Trm112p-like protein	4e-04
COG2835	60	COG2835, COG2835, Uncharacterized conserved protei	0.002

>gnl|CDD|217819 pfam03966, Trm112p, Trm112p-like protein

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 79  DFLMKFHHLHLEEGALVCPETGRKFPVNKG 108
             +    H  +EEG LVCPE G  +P+  G
Sbjct: 18  ALVEVAGHYDIEEGELVCPECGLAYPIRDG 47

The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. Length = 47

>gnl|CDD|225391 COG2835, COG2835, Uncharacterized conserved protein [Function unknown]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 90  EEGALVCPETGRKFPVNKGIPNMLLHEDE 118
           E+  L+CP     +P+  GIP +L   DE
Sbjct: 23  EKQELICPRCKLAYPIRDGIPVLL--PDE 49

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG1088	124	consensus Uncharacterized conserved protein [Funct	100.0
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	99.81
COG2835	60	Uncharacterized conserved protein [Function unknow	99.14
PRK11827	60	hypothetical protein; Provisional	99.05
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	89.35
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	82.7
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	81.82

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=7e-52  Score=295.67  Aligned_cols=118  Identities=58%  Similarity=1.068  Sum_probs=114.1

Q ss_pred             CccccchhhccCcCCccC-CCCeeEEEeEEEEecccCCHHHHhcccchhcHHHHHHHHHhCCCCCCCCCCCCCCCCC-cH
Q 033418            1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLD-SD   78 (119)
Q Consensus         1 MrllthN~L~c~~k~c~~-~fPL~l~~~~~~~~e~efn~~fi~~~l~kldw~al~~~a~~lg~~~lP~~~~p~~~~~-~e   78 (119)
                      |||+|||||+|++|+|.+ ||||++++.++++.++||||+|+.+|++|+||+||+.+|+++|..+||+. .|+++.+ ||
T Consensus         1 MKLlthNfLsc~~k~~~s~gFPL~l~~~k~~~~~vEFnPdFl~~m~~kidW~All~~A~~l~~~~lP~~-kPe~~~e~de   79 (124)
T KOG1088|consen    1 MKLLTHNFLSCSVKKVVSVGFPLRLVAKKVVEKEVEFNPDFLIRMLPKIDWSALLEAARSLGNTELPDE-KPEKLVEDDE   79 (124)
T ss_pred             CceeeeehhhheeecccccCCceEEEeeEEEEEeeecChHHHHHhhhhccHHHHHHHHHHhccccCCCC-CccccccccH
Confidence            999999999999999985 99999999999999999999999999999999999999999999999999 8988777 88


Q ss_pred             HHHHHHHhc----ccccceeecCCCCccccccCCccccCCCCCCC
Q 033418           79 DFLMKFHHL----HLEEGALVCPETGRKFPVNKGIPNMLLHEDEV  119 (119)
Q Consensus        79 e~L~~lH~~----~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~v  119 (119)
                      +|||++||+    +|.||+|+||+|||.|||++||||||+.++|+
T Consensus        80 ~~Lr~lHhlLle~~v~EG~l~CpetG~vfpI~~GIPNMLL~e~Ev  124 (124)
T KOG1088|consen   80 EFLRKLHHLLLEIDVIEGELVCPETGRVFPISDGIPNMLLSEDEV  124 (124)
T ss_pred             HHHHHHHHHHhhhhhccceEecCCCCcEeecccCCcccccCcccC
Confidence            899999999    99999999999999999999999999999986

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=99.81  E-value=3.8e-21  Score=125.21  Aligned_cols=68  Identities=40%  Similarity=0.838  Sum_probs=57.0

Q ss_pred             ccccchhhccCcCCccCCCCeeEEEeEEEEecccCCHHHHhcccchhcHHHHHHHHHhCCCCCCCCCCCCCCCCCcHHHH
Q 033418            2 RLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDFL   81 (119)
Q Consensus         2 rllthN~L~c~~k~c~~~fPL~l~~~~~~~~e~efn~~fi~~~l~kldw~al~~~a~~lg~~~lP~~~~p~~~~~~ee~L   81 (119)
                      |++|||||+|+  .|+ | ||                          ||.+|+++|+ +|+.++|+. .++++       
T Consensus         1 k~~llniL~Cp--~ck-~-pL--------------------------~~~~l~~~~~-~~~~~lp~~-~~~~~-------   41 (68)
T PF03966_consen    1 KLLLLNILACP--VCK-G-PL--------------------------DWEALVETAQ-LGLSELPKE-LPEDY-------   41 (68)
T ss_dssp             BGGGCGTBB-T--TTS-S-BE--------------------------HHHHHHHHHH-CCCCHCHHC-HHCHC-------
T ss_pred             ChhHHhhhcCC--CCC-C-cc--------------------------hHHHHHHHHH-hCcccCCCC-Cccch-------
Confidence            68999999999  687 5 88                          9999999999 998778877 66444       


Q ss_pred             HHHHhcccccceeecCCCCccccccCC
Q 033418           82 MKFHHLHLEEGALVCPETGRKFPVNKG  108 (119)
Q Consensus        82 ~~lH~~~i~~g~L~C~~c~~~ypI~~G  108 (119)
                      +.+...++++|.|+||+|||+|||+||
T Consensus        42 ~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen   42 HVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             EHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             hhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            233346999999999999999999998

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=1.4e-11  Score=79.09  Aligned_cols=31  Identities=32%  Similarity=0.699  Sum_probs=27.6

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +-..++|+|+.|+++|||+||||+||++|+.
T Consensus        21 ~~~~~~L~c~~~~~aYpI~dGIPvlL~~eaR   51 (60)
T COG2835          21 DEEKQELICPRCKLAYPIRDGIPVLLPDEAR   51 (60)
T ss_pred             eccCCEEEecccCceeecccCccccCchhhc
Confidence            4556699999999999999999999999864

>PRK11827 hypothetical protein; Provisional

Probab=99.05  E-value=4.1e-11  Score=77.12  Aligned_cols=31  Identities=32%  Similarity=0.613  Sum_probs=27.3

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+++|+|+.||++|||+||||+||.++++
T Consensus        21 ~~~~~~Lic~~~~laYPI~dgIPVlL~deAr   51 (60)
T PRK11827         21 NQEKQELICKLDNLAFPLRDGIPVLLETEAR   51 (60)
T ss_pred             cCCCCeEECCccCeeccccCCccccCHHHhc
Confidence            3445789999999999999999999999874

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=89.35  E-value=0.18  Score=28.89  Aligned_cols=18  Identities=28%  Similarity=0.820  Sum_probs=15.1

Q ss_pred             eeecCCCCccccccCC-cc
Q 033418           93 ALVCPETGRKFPVNKG-IP  110 (119)
Q Consensus        93 ~L~C~~c~~~ypI~~G-IP  110 (119)
                      .++||+|+..|.|.|. ||
T Consensus         2 ~i~Cp~C~~~y~i~d~~ip   20 (36)
T PF13717_consen    2 IITCPNCQAKYEIDDEKIP   20 (36)
T ss_pred             EEECCCCCCEEeCCHHHCC
Confidence            3689999999999987 54

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=82.70  E-value=0.78  Score=25.94  Aligned_cols=17  Identities=35%  Similarity=0.534  Sum_probs=14.5

Q ss_pred             cccceeecCCCCccccc
Q 033418           89 LEEGALVCPETGRKFPV  105 (119)
Q Consensus        89 i~~g~L~C~~c~~~ypI  105 (119)
                      -..+.++|+.||..||+
T Consensus        17 ~~~~~~~C~~Cg~~~~~   33 (33)
T PF08792_consen   17 KEDDYEVCIFCGSSFPY   33 (33)
T ss_pred             ecCCeEEcccCCcEeeC
Confidence            35788999999999985

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=81.82  E-value=1.5  Score=25.92  Aligned_cols=30  Identities=17%  Similarity=0.535  Sum_probs=20.0

Q ss_pred             cHHHHHHHHhcccccceeecCCCCc--cccccC
Q 033418           77 SDDFLMKFHHLHLEEGALVCPETGR--KFPVNK  107 (119)
Q Consensus        77 ~ee~L~~lH~~~i~~g~L~C~~c~~--~ypI~~  107 (119)
                      ++++++-|...---+| .+||.||.  .|.|++
T Consensus         3 e~~c~~~l~~~RW~~g-~~CP~Cg~~~~~~~~~   34 (46)
T PF12760_consen    3 EEACREYLEEIRWPDG-FVCPHCGSTKHYRLKT   34 (46)
T ss_pred             HHHHHHHHHHhcCCCC-CCCCCCCCeeeEEeCC
Confidence            3556665555544555 88999994  677766

It may be a zinc-binding beta ribbon domain that could bind DNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
2j6a_A	141	Crystal Structure Of S. Cerevisiae Ynr046w, A Zinc		5e-06

>pdb|2J6A|A Chain A, Crystal Structure Of S. Cerevisiae Ynr046w, A Zinc Finger Protein From The Erf1 Methyltransferase Complex Length = 141

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 1   MRLLTHNMLSSNIKGVA---NGFPLLIEVEK---VIEKQVDFNPDFLKNIFPKIEWQALV 54
           M+ LT N L  ++K      + FPL  +  K   V ++ ++FNP+FL NI  +++W A++
Sbjct: 1   MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVL 60
Query: 55  QASRSMGYXX------XXXXXXXXXXXXXXXFLMKFHHLHLE----EGALVCPETGRKFP 104
             +  +G                         L   H L L+    EG + C   G  + 
Sbjct: 61  TVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHIYY 120
Query: 105 VNKGIPN 111
           +  GIPN
Sbjct: 121 IKNGIPN 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2j6a_A	141	Protein TRM112; translation termination, methyltra	3e-42
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	2e-05
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	2e-05
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	4e-05
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	6e-05
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	7e-05

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae} Length = 141

 Score =  135 bits (340), Expect = 3e-42
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 1   MRLLTHNMLSSNIKGV---ANGFPLLI---EVEKVIEKQVDFNPDFLKNIFPKIEWQALV 54
           M+ LT N L  ++K      + FPL     + + V ++ ++FNP+FL NI  +++W A++
Sbjct: 1   MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVL 60

Query: 55  QASRSMGYSELPEESPES------SMLDSDDFLMKFHHLHLE----EGALVCPETGRKFP 104
             +  +G + LP   P           D    L   H L L+    EG + C   G  + 
Sbjct: 61  TVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHIYY 120

Query: 105 VNKGIPNMLLHEDEV 119
           +  GIPN+LL    V
Sbjct: 121 IKNGIPNLLLPPHLV 135

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1 Length = 67

 Score = 39.1 bits (92), Expect = 2e-05
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 86  HLHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
                E  LV       + ++ GIP +L+ E
Sbjct: 21  RYLESEQLLVNERLNLAYRIDDGIPVLLIDE 51

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis} Length = 68

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 86  HLHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
             H ++  L   +    +P+  GIP ML +E
Sbjct: 19  EYHQDKQELWSRQAKLAYPIKDGIPYMLENE 49

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} Length = 56

 Score = 37.9 bits (89), Expect = 4e-05
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 90  EEGALVCPETGRKFPVNKGIPNMLLHE 116
            E      + G  +PV  GIP +L+ E
Sbjct: 25  AELICTGQDCGLAYPVRDGIPVLLVDE 51

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} Length = 70

 Score = 38.0 bits (89), Expect = 4e-05
 Identities = 11/31 (35%), Positives = 13/31 (41%)

Query: 86  HLHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
                +  LVC      FPV  G+P ML  E
Sbjct: 19  EFQRAQAELVCNADRLAFPVRDGVPIMLEAE 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 25/86 (29%)

Query: 25  EVEKVIEKQVD-FNPDFLKN------IFP---KIEWQALVQASRSMGYSELPEESPE--- 71
           ++  +IE  ++   P   +       +FP    I    L     S+ + ++ +       
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-----SLIWFDVIKSDVMVVV 408

Query: 72  -----SSML--DSDDFLMKFHHLHLE 90
                 S++     +  +    ++LE
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLE 434

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1 Length = 68

 Score = 37.6 bits (88), Expect = 6e-05
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 86  HLHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
                +  L+C      FP+  GIP ML  E
Sbjct: 19  VFDKSKDELICKGDRLAFPIKDGIPMMLESE 49

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 Length = 69

 Score = 37.3 bits (87), Expect = 7e-05
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 86  HLHLEEGALVCPETGRKFPVNKGIPNMLLHE 116
            L  ++  L+    G  +P+  GIP ML  E
Sbjct: 19  KLSADKTELISKGAGLAYPIRDGIPVMLESE 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
2j6a_A	141	Protein TRM112; translation termination, methyltra	100.0
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	100.0
2k5r_A	97	Uncharacterized protein XF2673; solution structure	99.57
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	99.3
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	99.28
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	99.26
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	99.25
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	99.25
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	99.14
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	92.06

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-51  Score=302.31  Aligned_cols=118  Identities=33%  Similarity=0.675  Sum_probs=112.7

Q ss_pred             CccccchhhccCcCCcc---CCCCeeE--EEeEEEEecc-cCCHHHHhcccchhcHHHHHHHHHhCCCCCCCCCCCCCCC
Q 033418            1 MRLLTHNMLSSNIKGVA---NGFPLLI--EVEKVIEKQV-DFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSM   74 (119)
Q Consensus         1 MrllthN~L~c~~k~c~---~~fPL~l--~~~~~~~~e~-efn~~fi~~~l~kldw~al~~~a~~lg~~~lP~~~~p~~~   74 (119)
                      |||+|||||+|++|+|+   +||||++  +++++++.++ ||||+|+++||+|+||.||+++|+++|+++||++ +|+++
T Consensus         1 MkLlThN~L~c~vk~c~~~~~gFPL~~~~~~~~~~~~e~~efnpeFi~~mlpkldW~aL~~aA~~lg~~~LP~~-~pe~~   79 (141)
T 2j6a_A            1 MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVLTVAAELGNNALPPT-KPSFP   79 (141)
T ss_dssp             CBGGGGGTCCCCCGGGTTCTTSSSCEECTTTCEEEECTTSCCCHHHHHHHHHHSCHHHHHHHHHHTTCCCSCSS-CCCCC
T ss_pred             CceeehhhhhcccccCCcCCCCcceeeccccceeEEcccccCCHHHHHHHHhhcCHHHHHHHHHHhCCccCCCc-CCccc
Confidence            99999999999999998   8999999  8999999999 9999999999999999999999999999889999 88876


Q ss_pred             -----CCcHH--HHHHHHhc----ccccceeecCCCCccccccCCccccCCCCCCC
Q 033418           75 -----LDSDD--FLMKFHHL----HLEEGALVCPETGRKFPVNKGIPNMLLHEDEV  119 (119)
Q Consensus        75 -----~~~ee--~L~~lH~~----~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~v  119 (119)
                           .+||+  |||++||+    ++.+|+|+|++||++|||+|||||||+++++|
T Consensus        80 ~~~~~~~dee~~~Lk~lHh~lle~~v~eg~L~C~~cg~~YPI~dGIP~mL~~ear~  135 (141)
T 2j6a_A           80 SSIQELTDDDMAILNDLHTLLLQTSIAEGEMKCRNCGHIYYIKNGIPNLLLPPHLV  135 (141)
T ss_dssp             SSGGGCCHHHHHHHHHHHHHHTTEEEEEEEEECTTTCCEEEEETTEESSCCCSSCC
T ss_pred             ccccccCchHHHHHHHHHHHHhheeccCCEEECCCCCCcccccCCccCcCCcHHHh
Confidence                 55676  99999999    89999999999999999999999999999986

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=100.00  E-value=3.9e-49  Score=284.20  Aligned_cols=112  Identities=24%  Similarity=0.332  Sum_probs=106.4

Q ss_pred             CccccchhhccCcCCccCCCCeeEEEeEEEEecccCC--HHHHhcccc---hhcHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 033418            1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFN--PDFLKNIFP---KIEWQALVQASRSMGYSELPEESPESSML   75 (119)
Q Consensus         1 MrllthN~L~c~~k~c~~~fPL~l~~~~~~~~e~efn--~~fi~~~l~---kldw~al~~~a~~lg~~~lP~~~~p~~~~   75 (119)
                      |||+|||||+|++|+|++|  |++++.++++.++|||  |+|+++||+   |+||.||+++|+++|+++||++ +|++++
T Consensus         1 MkLlThN~L~c~vk~~~~g--L~~~~~~~~~~e~efn~~~eFl~~mlp~~~kldW~aL~~aA~~lg~~~LP~~-~p~~~~   77 (125)
T 3q87_A            1 MKPFLLGLLKCKRCSFMTK--LILECEKAESNDVDTDDVKIFNKHMFTENGGERLKSLVNSLRDFHGRELSEQ-DISSFV   77 (125)
T ss_dssp             CCGGGGGTBCCSSCSSCCC--EEEEEEEEEECCCC---CCCCCHHHHHHHHHHHHHHHHHHTTTCCSSCCCHH-HHHHHH
T ss_pred             CcccccchhhhcccccCCC--ceEEeeEEEEecccCCccHHHHHHHcCCccccCHHHHHHHHHHhCCccCCCC-CCCccc
Confidence            9999999999999999877  9999999999999999  999999999   9999999999999999889999 998888


Q ss_pred             CcHHHHHHHHhc----ccccceeecCCCCccccccCCccccCCC
Q 033418           76 DSDDFLMKFHHL----HLEEGALVCPETGRKFPVNKGIPNMLLH  115 (119)
Q Consensus        76 ~~ee~L~~lH~~----~i~~g~L~C~~c~~~ypI~~GIP~mL~~  115 (119)
                      +||+|||++||+    +|.||.|+||+|||.|||++|||||+..
T Consensus        78 ~deefLr~lHh~Lle~~V~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           78 ENPGDDEKIKEFLFGIDVVEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             HCTTCCHHHHHHHHSEEEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             CCHHHHHHHHHHHHheEEEEEEEECCCCCCEeeccCCcccHHHh
Confidence            899999999999    9999999999999999999999999965

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=99.57  E-value=9.6e-16  Score=105.90  Aligned_cols=78  Identities=18%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             CccccchhhccCcCCccCCCCeeEEEeEEEEecccCCHHHHhcccchhcHHHHHHHHHhCCCCCCCCCCCCCCCCCcHHH
Q 033418            1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYSELPEESPESSMLDSDDF   80 (119)
Q Consensus         1 MrllthN~L~c~~k~c~~~fPL~l~~~~~~~~e~efn~~fi~~~l~kldw~al~~~a~~lg~~~lP~~~~p~~~~~~ee~   80 (119)
                      |..++.++|+||  .|+ | ||.+...      .         .+++ .|+|+.+..    +......  +     .+  
T Consensus         1 md~~LLdILaCP--~cK-~-pL~l~~~------~---------~~~~-~~ca~~~~~----~~~~~~~--~-----~~--   47 (97)
T 2k5r_A            1 MDRKLLHLLCSP--DTR-Q-PLSLLES------K---------GLEA-LNKAIVSGT----VQRADGS--I-----QN--   47 (97)
T ss_dssp             CCTTTCSSCCCC--TTS-S-CCEECCH------H---------HHHH-HHHHHHHTC----CBCTTSC--B-----CC--
T ss_pred             CChHHhhheECC--CCC-C-ccccccc------c---------hhhh-hhhhhhccc----ccccccc--c-----cc--
Confidence            788999999999  798 6 9988321      1         2222 688886533    1111111  0     01  


Q ss_pred             HHHHHhcccccceeecCCCCccccccCCccccCCCCCC
Q 033418           81 LMKFHHLHLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        81 L~~lH~~~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                             ++.+|+|+|+.||++|||+||||+||+++++
T Consensus        48 -------e~~~~~LvC~~c~~~YPI~dGIPvmL~~ear   78 (97)
T 2k5r_A           48 -------QSLHEALITRDRKQVFRIEDSIPVLLPEEAI   78 (97)
T ss_dssp             -------CCCSEEEECTTSCEEEEEETTEEECCGGGEE
T ss_pred             -------cccCCeEEcCCCCCCccccCCCcccChHHhc
Confidence                   7889999999999999999999999999864

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=99.30  E-value=4.6e-13  Score=86.81  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=28.4

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+|+|+|++||++|||+||||+||+++++
T Consensus        23 ~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear   53 (67)
T 2jny_A           23 LESEQLLVNERLNLAYRIDDGIPVLLIDEAT   53 (67)
T ss_dssp             ETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred             eCCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence            4568999999999999999999999999875

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=99.28  E-value=7.7e-13  Score=85.92  Aligned_cols=31  Identities=29%  Similarity=0.547  Sum_probs=28.2

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+|+|+|++||++|||+||||+||+++++
T Consensus        21 ~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear   51 (68)
T 2jr6_A           21 HQDKQELWSRQAKLAYPIKDGIPYMLENEAR   51 (68)
T ss_dssp             ETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred             eCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence            4457999999999999999999999999875

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=99.26  E-value=7.4e-13  Score=86.01  Aligned_cols=31  Identities=32%  Similarity=0.618  Sum_probs=28.2

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+|+|+|++||++|||+||||+||+++++
T Consensus        21 ~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear   51 (68)
T 2hf1_A           21 DKSKDELICKGDRLAFPIKDGIPMMLESEAR   51 (68)
T ss_dssp             ETTTTEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             eCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence            4457999999999999999999999999875

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=99.25  E-value=8.7e-13  Score=86.11  Aligned_cols=31  Identities=35%  Similarity=0.617  Sum_probs=28.0

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+|+|+|++||++|||+||||+||+++++
T Consensus        21 ~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear   51 (70)
T 2js4_A           21 QRAQAELVCNADRLAFPVRDGVPIMLEAEAR   51 (70)
T ss_dssp             ETTTTEEEETTTTEEEEEETTEECCCGGGSE
T ss_pred             eCCCCEEEcCCCCceecCCCCeeeeChhhcc
Confidence            4457999999999999999999999999874

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=99.25  E-value=1.1e-12  Score=85.41  Aligned_cols=31  Identities=29%  Similarity=0.575  Sum_probs=28.4

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+|+|+|++||++|||+||||+||+++++
T Consensus        21 ~~~~~~LiC~~cg~~YPI~dGIPvmL~~ear   51 (69)
T 2pk7_A           21 SADKTELISKGAGLAYPIRDGIPVMLESEAR   51 (69)
T ss_dssp             CTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             eCCCCEEEcCCCCcEecCcCCeeeeChhhcc
Confidence            4568999999999999999999999999875

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=99.14  E-value=1.1e-11  Score=77.56  Aligned_cols=31  Identities=32%  Similarity=0.771  Sum_probs=27.8

Q ss_pred             ccccceeecC--CCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCP--ETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~--~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+|+|+|+  .||++|||+||||+||++|+.
T Consensus        21 ~~~~~~L~C~~~~c~~~YPI~dGIPvlL~~ear   53 (56)
T 2kpi_A           21 EERDAELICTGQDCGLAYPVRDGIPVLLVDEAR   53 (56)
T ss_dssp             EEETTEEEECSSSCCCEEEEETTEECCCTTTCB
T ss_pred             eecCCEEEcCCcCCCcEEeeECCEeeeCHHHcc
Confidence            3445999999  999999999999999999975

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=92.06  E-value=0.061  Score=31.53  Aligned_cols=18  Identities=28%  Similarity=0.540  Sum_probs=15.6

Q ss_pred             ccccceeecCCCCccccc
Q 033418           88 HLEEGALVCPETGRKFPV  105 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI  105 (119)
                      +...|+|+|+.||.+|+-
T Consensus        19 d~~~gelvC~~CG~v~~e   36 (50)
T 1pft_A           19 DPERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             ETTTTEEEESSSCCBCCC
T ss_pred             cCCCCeEECcccCCcccc
Confidence            567899999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d2jnya1	59	b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405	2e-05
d2hf1a1	59	b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Ch	1e-04
d2pk7a1	59	b.171.1.1 (A:3-61) Uncharacterized protein PFL1779	2e-04

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]} Length = 59

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 37.3 bits (87), Expect = 2e-05
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 90  EEGALVCPETGRKFPVNKGIPNMLLHE 116
            E  LV       + ++ GIP +L+ E
Sbjct: 25  SEQLLVNERLNLAYRIDDGIPVLLIDE 51

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]} Length = 59

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

 Score = 35.0 bits (81), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 90  EEGALVCPETGRKFPVNKGIPNMLLHE 116
            +  L+C      FP+  GIP ML  E
Sbjct: 22  SKDELICKGDRLAFPIKDGIPMMLESE 48

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]} Length = 59

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 90  EEGALVCPETGRKFPVNKGIPNMLLHE 116
           ++  L+    G  +P+  GIP ML  E
Sbjct: 21  DKTELISKGAGLAYPIRDGIPVMLESE 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	99.1
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	99.05
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	99.0
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	90.41
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	90.22
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	89.77
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	88.64
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	87.73
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	80.88

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.10  E-value=1e-11  Score=77.11  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=28.0

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+++|+|+.||++|||+||||+||++++.
T Consensus        23 ~~~~~~Lvc~~~~~~YPI~dgIPvLL~deA~   53 (59)
T d2jnya1          23 LESEQLLVNERLNLAYRIDDGIPVLLIDEAT   53 (59)
T ss_dssp             ETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred             eCCCCEEEcCccCccccccCCccccCHHHhc
Confidence            4467899999999999999999999999874

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.05  E-value=1.5e-11  Score=76.41  Aligned_cols=31  Identities=29%  Similarity=0.575  Sum_probs=27.9

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +-.+++|+|+.|+++|||+||||+||++++.
T Consensus        19 ~~~~~~Lvc~~~~laYPI~dGIPvlL~~eAr   49 (59)
T d2pk7a1          19 SADKTELISKGAGLAYPIRDGIPVMLESEAR   49 (59)
T ss_dssp             CTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             eCCCCEEecCCcCccccccCCccccCHHHhc
Confidence            4457899999999999999999999999874

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.00  E-value=3.1e-11  Score=74.92  Aligned_cols=31  Identities=32%  Similarity=0.618  Sum_probs=27.8

Q ss_pred             ccccceeecCCCCccccccCCccccCCCCCC
Q 033418           88 HLEEGALVCPETGRKFPVNKGIPNMLLHEDE  118 (119)
Q Consensus        88 ~i~~g~L~C~~c~~~ypI~~GIP~mL~~e~~  118 (119)
                      +..+++|+|+.|+++|||+||||+||++++.
T Consensus        20 ~~~~~~Lvc~~~~l~YPI~dGIPvlL~~eAr   50 (59)
T d2hf1a1          20 DKSKDELICKGDRLAFPIKDGIPMMLESEAR   50 (59)
T ss_dssp             ETTTTEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred             eCCCCEEecCCcCccccccCCccccCHHHhc
Confidence            4467899999999999999999999999873

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.41  E-value=0.043  Score=30.12  Aligned_cols=19  Identities=32%  Similarity=0.658  Sum_probs=14.7

Q ss_pred             cccceeecCCCCccccccC
Q 033418           89 LEEGALVCPETGRKFPVNK  107 (119)
Q Consensus        89 i~~g~L~C~~c~~~ypI~~  107 (119)
                      -..+.|+||+|||.|+-.+
T Consensus        16 edg~l~vCPeC~hEW~~~~   34 (38)
T d2akla2          16 EDGALLVCPECAHEWSPNE   34 (38)
T ss_dssp             ECSSSEEETTTTEEECTTT
T ss_pred             cCCCEEECCcccCcCCccc
Confidence            3456789999999997544

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.22  E-value=0.053  Score=29.59  Aligned_cols=17  Identities=29%  Similarity=0.567  Sum_probs=14.0

Q ss_pred             ceeecCCCCccccccCC
Q 033418           92 GALVCPETGRKFPVNKG  108 (119)
Q Consensus        92 g~L~C~~c~~~ypI~~G  108 (119)
                      |..+|+.||+.|-|.--
T Consensus         1 GRr~C~~cG~~Yh~~~~   17 (38)
T d1akya2           1 GRLIHPASGRSYHKIFN   17 (38)
T ss_dssp             TEEECTTTCCEEETTTB
T ss_pred             CccCCcCccchhhhhcc
Confidence            67899999999977543

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.057  Score=28.90  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=15.4

Q ss_pred             ceeecCCCCccccccCCcc
Q 033418           92 GALVCPETGRKFPVNKGIP  110 (119)
Q Consensus        92 g~L~C~~c~~~ypI~~GIP  110 (119)
                      |..+|+.||+.|-|.---|
T Consensus         1 GRr~c~~cG~~Yh~~~~PP   19 (35)
T d1e4va2           1 GRRVHAPSGRVYHVKFNPP   19 (35)
T ss_dssp             TEEEETTTTEEEETTTBCC
T ss_pred             CccCCcCcCChhhhccCcc
Confidence            6789999999999875433

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=88.64  E-value=0.088  Score=28.14  Aligned_cols=16  Identities=19%  Similarity=0.447  Sum_probs=13.8

Q ss_pred             ceeecCCCCccccccC
Q 033418           92 GALVCPETGRKFPVNK  107 (119)
Q Consensus        92 g~L~C~~c~~~ypI~~  107 (119)
                      |..+|+.||+.|-|.-
T Consensus         1 GR~~C~~CG~~Yh~~~   16 (35)
T d1s3ga2           1 GRRICKVCGTSYHLLF   16 (35)
T ss_dssp             SEEEETTTCCEEETTT
T ss_pred             CccCCcCcCchhcccc
Confidence            6789999999997754

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.73  E-value=0.11  Score=27.79  Aligned_cols=17  Identities=18%  Similarity=0.438  Sum_probs=14.5

Q ss_pred             ceeecCCCCccccccCC
Q 033418           92 GALVCPETGRKFPVNKG  108 (119)
Q Consensus        92 g~L~C~~c~~~ypI~~G  108 (119)
                      |..+|+.||+.|-|.--
T Consensus         1 GRr~C~~CG~~Yh~~~~   17 (35)
T d1zina2           1 GRRICRNCGATYHLIFH   17 (35)
T ss_dssp             TEEEETTTCCEEETTTB
T ss_pred             CccCCcCcCchhccccC
Confidence            67899999999998643

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=80.88  E-value=0.29  Score=26.28  Aligned_cols=18  Identities=22%  Similarity=0.532  Sum_probs=14.2

Q ss_pred             eeecCCCCccccccCCcc
Q 033418           93 ALVCPETGRKFPVNKGIP  110 (119)
Q Consensus        93 ~L~C~~c~~~ypI~~GIP  110 (119)
                      .++||.||+.|-|.---|
T Consensus         2 R~vc~~cG~~Yh~~~~pP   19 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPP   19 (37)
T ss_dssp             EEEETTTTEEEETTTBCC
T ss_pred             ceeeCCcCChhhhccCCc
Confidence            579999999998864433