Citrus Sinensis ID: 033435

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVFF
Secondary Structure (PSIPRED)
ccccEEEEEccccEEEcccccccccccccEEcccEEccccEEEEEEccccccccccccEEEccccEEEEccEEcccccEEEEEEcccccccccccccEEEEEEccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEEccccccHcccHHHHHHHHcccccccEEEEcEEEEEEcccHHHHEHHccccEEEEEEEHccccEEEEEEEHHcHcccccccccEEEEHHHEEccccccEEEEEc
Coil and Loop (DISEMBL)
MGRIFLVelkgrsyykcrfcnSHLALADSVLSWsfncrrgraylFSDVVNIMLGPQEERLMLSGMHTVEDIFccccgqivgWKYVAAHdknqkykegkfvLERYRIGKYVFELLVSVFF
Flexible Loop (DISEMBL)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVFF
Low Complexity Region (SEG)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVFF
Disordered region (IsUnstruct)
***IFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVF*
Disordered Region (DISOPRED)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVFF
Disordered Region (DISEMBL)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVFF
Disordered Region (DISPRO)
*GRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELLVSVFF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9FN32	129	Protein yippee-like At5g5	yes	no	0.882	0.813	0.754	1e-41
P59234	129	Protein yippee-like OS=So	N/A	no	0.882	0.813	0.594	3e-34
Q9SR97	128	Protein yippee-like At3g0	no	no	0.882	0.820	0.537	3e-32
Q9C777	129	Protein yippee-like At3g1	no	no	0.882	0.813	0.603	1e-31
Q9LY56	121	Protein yippee-like At3g5	no	no	0.966	0.950	0.529	1e-30
Q8S5M8	119	Putative yippee-like prot	no	no	0.781	0.781	0.559	5e-26
Q9T096	106	Protein yippee-like At4g2	no	no	0.865	0.971	0.456	6e-23
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.739	0.692	0.522	7e-22
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.739	0.692	0.522	7e-22
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.739	0.692	0.522	7e-22

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 91/106 (85%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1   MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           MLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RI
Sbjct: 60  MLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRI 105

Arabidopsis thaliana (taxid: 3702)

>sp|P59234|YIPL_SOLTU Protein yippee-like OS=Solanum tuberosum PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 86/106 (81%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F++ L+G+  Y C+ C +HLAL+++++S SF+C+ G+AYLFS VVN+  G  E R+
Sbjct: 1   MGRLFVLTLEGK-IYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           M++GMHTV DIFC CCG IVGWKY  AH+K+QKYKEGK VLER++I
Sbjct: 60  MMTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKI 105

Solanum tuberosum (taxid: 4113)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+++L+G   Y C++C +H A+ + ++S SF+C+ GRAYLF +VVN+ +G +E R+
Sbjct: 1   MGRLFVIDLEGL-VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRV 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           M++G HTV DIFC  CG +VGWKY  A+DK+QKYKEGKF+LER+++
Sbjct: 60  MITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKV 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+FLV L+G+SY  C+ C ++LAL D V+S SF  R G+AYLFS VVN+  G +E+R+
Sbjct: 1   MGRLFLVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           M++GMHTV DI+C  CG  VGWKY  A +KNQKYKEGK VLERY++
Sbjct: 60  MMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY56|YIPL4_ARATH Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 87/117 (74%), Gaps = 2/117 (1%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+V+L+G + Y C+ C +HL+    ++S SF C+ GRAYLF++VVN+ +G +E+R+
Sbjct: 1   MGRVFMVDLEG-NIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI-GKYVFELLVS 116
           M++G+H V DIFC  CG  VGWKY  AH+K+QKYKEGK VLE Y+I G +    LVS
Sbjct: 60  MITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKISGPHDSNDLVS 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S5M8|YIPL_ORYSJ Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 71/93 (76%)

Query: 16  KCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCC 75
           KCR C    A AD++LS  F  R GRAYLF  VVNI LGP E+R +++G+HTV+DI+C C
Sbjct: 24  KCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYCSC 83

Query: 76  CGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGK 108
           C QI+GW+Y  A+++++KYKEGKF+LE+ R+ K
Sbjct: 84  CQQILGWRYEKAYEESEKYKEGKFILEKARMWK 116

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 71/103 (68%)

Query: 6   LVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGM 65
           + +  G   Y C  C +H+ L D ++S +F  R GRA+LFS  +NI++GP+E+R +L+G+
Sbjct: 1   MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query: 66  HTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGK 108
           HTV DI C  C + +GWKY  A++ +QKYKEGKF+ E+ +I K
Sbjct: 61  HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVK 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
            C   +GWKY  A + +QKYKEGK+++E
Sbjct: 89  SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
            C   +GWKY  A + +QKYKEGK+++E
Sbjct: 89  SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
            C   +GWKY  A + +QKYKEGK+++E
Sbjct: 89  SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
449457755	127	PREDICTED: protein yippee-like At5g53940	0.949	0.889	0.745	8e-43
255536753	127	fad NAD binding oxidoreductases, putativ	0.882	0.826	0.754	5e-42
359493828	127	PREDICTED: protein yippee-like At5g53940	0.882	0.826	0.716	2e-40
15238881	129	yippee-like zinc-binding protein [Arabid	0.882	0.813	0.754	4e-40
356549697	129	PREDICTED: protein yippee-like At5g53940	0.882	0.813	0.707	1e-39
297796245	129	yippee family protein [Arabidopsis lyrat	0.882	0.813	0.745	2e-39
224114878	122	predicted protein [Populus trichocarpa]	0.882	0.860	0.726	8e-39
351720851	129	uncharacterized protein LOC100305822 [Gl	0.882	0.813	0.726	9e-39
356548694	135	PREDICTED: uncharacterized protein LOC10	0.882	0.777	0.698	1e-38
388498478	127	unknown [Medicago truncatula]	0.882	0.826	0.716	1e-38

>gi|449457755|ref|XP_004146613.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus] gi|449524786|ref|XP_004169402.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus]

 Score =  177 bits (448), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 99/114 (86%), Gaps = 1/114 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+FLVEL+GRSY +CRFCN+++ALAD VLS +FNC +GRAYLFS+VVNI  GP+EERL
Sbjct: 1   MGRVFLVELEGRSY-RCRFCNNNVALADDVLSRTFNCSQGRAYLFSNVVNITSGPKEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYVFELL 114
           MLSGMH VEDIFCC CGQI+GWKYV  HDK QKYKEGKFVLER+RI + + E L
Sbjct: 60  MLSGMHIVEDIFCCICGQILGWKYVTTHDKYQKYKEGKFVLERWRIVEEMMEDL 113

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536753|ref|XP_002509443.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223549342|gb|EEF50830.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 97/106 (91%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+V+++GR Y  CRFC++ LALAD VLS +FNCR+GRAYLFS+VVNI +GP EER+
Sbjct: 1   MGRLFVVDVEGRCY-SCRFCDTPLALADDVLSRTFNCRKGRAYLFSNVVNITVGPPEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           MLSGMHTVEDI+CC CGQ++GWKYVAAHDK+QKYKEGKFVLER+RI
Sbjct: 60  MLSGMHTVEDIYCCSCGQLLGWKYVAAHDKSQKYKEGKFVLERWRI 105

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493828|ref|XP_002282618.2| PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera] gi|302142969|emb|CBI20264.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 93/106 (87%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+VEL+ R+Y +C+FC +HLALAD ++S +F+CRRG+AYLF++ VNI +G QEER+
Sbjct: 1   MGRVFVVELEARAY-ECKFCKTHLALADDLVSRAFHCRRGKAYLFNNAVNITVGAQEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           M+SGMHTV DIFCCCCGQIVGWKY  AHDK QKYKEGKFVLER RI
Sbjct: 60  MISGMHTVADIFCCCCGQIVGWKYEMAHDKTQKYKEGKFVLERGRI 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238881|ref|NP_200205.1| yippee-like zinc-binding protein [Arabidopsis thaliana] gi|27923898|sp|Q9FN32.1|YIPL7_ARATH RecName: Full=Protein yippee-like At5g53940 gi|10177256|dbj|BAB10724.1| zinc-binding protein-like [Arabidopsis thaliana] gi|21554253|gb|AAM63328.1| zinc-binding protein-like [Arabidopsis thaliana] gi|51971218|dbj|BAD44301.1| zinc-binding protein-like [Arabidopsis thaliana] gi|88011182|gb|ABD38914.1| At5g53940 [Arabidopsis thaliana] gi|332009048|gb|AED96431.1| yippee-like zinc-binding protein [Arabidopsis thaliana]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 91/106 (85%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1   MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           MLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RI
Sbjct: 60  MLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRI 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549697|ref|XP_003543228.1| PREDICTED: protein yippee-like At5g53940-like [Glycine max]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 94/106 (88%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF+VEL+GRSY +C+FC +HLALAD ++S +F+CRRG+AYLF++ VN  +G  EER+
Sbjct: 1   MGRIFVVELEGRSY-RCKFCRTHLALADDLISRAFHCRRGKAYLFNNAVNFTIGTPEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           MLSG+HTV DIFCCCCGQI+GWKY +AH+K+QKYKEGKFVLER RI
Sbjct: 60  MLSGLHTVADIFCCCCGQIIGWKYESAHEKSQKYKEGKFVLERGRI 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796245|ref|XP_002866007.1| yippee family protein [Arabidopsis lyrata subsp. lyrata] gi|297311842|gb|EFH42266.1| yippee family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/106 (74%), Positives = 90/106 (84%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1   MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           MLSGMHTV DIFCC CGQ VGWKY +AH+K QKYKEGKFVLER RI
Sbjct: 60  MLSGMHTVADIFCCSCGQNVGWKYESAHEKAQKYKEGKFVLERGRI 105

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114878|ref|XP_002316882.1| predicted protein [Populus trichocarpa] gi|222859947|gb|EEE97494.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 92/106 (86%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF+VEL+GRSY +C+FC +HLAL D ++S SF CRRG+AYLF++VVNI +G  EER+
Sbjct: 1   MGRIFVVELEGRSY-RCKFCGTHLALPDQLVSKSFRCRRGKAYLFNNVVNITVGVLEERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           MLSGMHTV DIFCCCCG I+GWKY AAH+ +QKYKEGKFVLER RI
Sbjct: 60  MLSGMHTVADIFCCCCGGIIGWKYEAAHEMSQKYKEGKFVLERGRI 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720851|ref|NP_001237190.1| uncharacterized protein LOC100305822 [Glycine max] gi|255626701|gb|ACU13695.1| unknown [Glycine max]

 Score =  164 bits (414), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 91/106 (85%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGRIF VEL+GRSY  C+ C +HLALAD ++S SF C+RG+AYLF++VVN  +G  EERL
Sbjct: 1   MGRIFTVELEGRSY-SCKSCKTHLALADDLISRSFYCQRGKAYLFNNVVNFTIGELEERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           MLSG+HTV DIFCCCCGQIVGWKY +AH++NQKYKEGKFVLER RI
Sbjct: 60  MLSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLERGRI 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548694|ref|XP_003542735.1| PREDICTED: uncharacterized protein LOC100305833 [Glycine max]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 92/106 (86%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F++EL GRSY  C+FCN+ LALAD +LS +FNC +GRAYLFS VVN++LGPQ ER+
Sbjct: 1   MGRVFVLELDGRSY-GCKFCNTPLALADHILSRNFNCSQGRAYLFSKVVNVILGPQVERM 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           M+SG+HTVEDIFCC CG ++GWKYV AH+KN+ YKEGKFVLER+ I
Sbjct: 60  MISGLHTVEDIFCCNCGNLLGWKYVLAHEKNEIYKEGKFVLERWTI 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498478|gb|AFK37305.1| unknown [Medicago truncatula]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 90/106 (84%), Gaps = 1/106 (0%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F ++L GR+Y +C FC +  ALAD VLS SF+C RGRAYLFS VVN+ LG Q ERL
Sbjct: 1   MGRVFYLDLDGRAY-RCTFCRTPFALADHVLSRSFSCSRGRAYLFSKVVNVTLGTQVERL 59

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           M+SG+HTVEDIFCCCCGQIVGWKYV AH+K++ YKEGKFVLER+RI
Sbjct: 60  MMSGLHTVEDIFCCCCGQIVGWKYVVAHEKSETYKEGKFVLERWRI 105

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	0.882	0.813	0.754	2e-40
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	0.882	0.807	0.584	8.5e-33
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.907	0.843	0.536	8.5e-33
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	0.882	0.648	0.603	6e-32
TAIR|locus:2082053	121	AT3G55890 "AT3G55890" [Arabido	0.966	0.950	0.529	1.4e-30
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.924	0.852	0.463	1.4e-23
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	0.823	0.924	0.479	3.8e-23
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.739	0.692	0.522	2.6e-22
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.739	0.692	0.522	2.6e-22
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.739	0.692	0.522	2.6e-22

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 80/106 (75%), Positives = 91/106 (85%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct:     1 MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
             MLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RI
Sbjct:    60 MLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRI 105

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+V L+G+  Y C+ C +HLA  + ++S SF+C+ G+AYLF+ V N+ +G  EERL
Sbjct:     1 MGRLFVVNLEGK-IYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERL 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
             M++G HTV DIFC  CG IVGWKY  AH+KNQKYKEGK VLER++I
Sbjct:    60 MMTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKI 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 59/110 (53%), Positives = 87/110 (79%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+++L+G   Y C++C +H A+ + ++S SF+C+ GRAYLF +VVN+ +G +E R+
Sbjct:     1 MGRLFVIDLEGL-VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRV 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI-GKY 109
             M++G HTV DIFC  CG +VGWKY  A+DK+QKYKEGKF+LER+++ G Y
Sbjct:    60 MITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLGPY 109

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 64/106 (60%), Positives = 82/106 (77%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+FLV L+G+SY  C+ C ++LAL D V+S SF  R G+AYLFS VVN+  G +E+R+
Sbjct:    34 MGRLFLVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRM 92

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
             M++GMHTV DI+C  CG  VGWKY  A +KNQKYKEGK VLERY++
Sbjct:    93 MMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082053 AT3G55890 "AT3G55890" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 62/117 (52%), Positives = 86/117 (73%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+V+L+G  Y  C+ C +HL+    ++S SF C+ GRAYLF++VVN+ +G +E+R+
Sbjct:     1 MGRVFMVDLEGNIYI-CKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRM 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI-GKYVFELLVS 116
             M++G+H V DIFC  CG  VGWKY  AH+K+QKYKEGK VLE Y+I G +    LVS
Sbjct:    60 MITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKISGPHDSNDLVS 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/110 (46%), Positives = 70/110 (63%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F   L G S   C  C +HL L D ++S  F  R G A+LF    NI +GP E+R 
Sbjct:     1 MGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRT 60

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGKYV 110
             + +GMH V DI+C  CG+ +GWKY  A +++QKYK GK++LE+ +I K V
Sbjct:    61 LTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEKAKIQKEV 110

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 47/98 (47%), Positives = 69/98 (70%)

Query:    11 GRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVED 70
             G   Y C  C +H+ L D ++S +F  R GRA+LFS  +NI++GP+E+R +L+G+HTV D
Sbjct:     6 GPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVAD 65

Query:    71 IFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRIGK 108
             I C  C + +GWKY  A++ +QKYKEGKF+ E+ +I K
Sbjct:    66 ISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVK 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
              C   +GWKY  A + +QKYKEGK+++E
Sbjct:    89 SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
              C   +GWKY  A + +QKYKEGK+++E
Sbjct:    89 SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 46/88 (52%), Positives = 62/88 (70%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKYVAAHDKNQKYKEGKFVLE 102
              C   +GWKY  A + +QKYKEGK+++E
Sbjct:    89 SCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65Z93	YPEL4_MOUSE	No assigned EC number	0.5227	0.7394	0.6929	yes	no
Q96NS1	YPEL4_HUMAN	No assigned EC number	0.5227	0.7394	0.6929	yes	no
Q6NWI4	YPEL3_DANRE	No assigned EC number	0.5340	0.7394	0.7394	yes	no
Q5XID5	YPEL4_RAT	No assigned EC number	0.5227	0.7394	0.6929	yes	no
Q9FN32	YIPL7_ARATH	No assigned EC number	0.7547	0.8823	0.8139	yes	no
Q9W2X7	YPL1_DROME	No assigned EC number	0.5113	0.7394	0.7719	yes	no
Q2YDI3	YPEL2_BOVIN	No assigned EC number	0.5113	0.7394	0.7394	yes	no
P59234	YIPL_SOLTU	No assigned EC number	0.5943	0.8823	0.8139	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	4e-55

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  166 bits (424), Expect = 4e-55
 Identities = 59/106 (55%), Positives = 77/106 (72%)

Query: 1   MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
           MGR+F+V L G   Y C+ C +HLAL   ++S SF  R GRAYLF+ VVN++ G  E+R 
Sbjct: 1   MGRLFVVYLTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQ 60

Query: 61  MLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERYRI 106
           ML+G+HTV DIFC  CG  +GWKY  A++++QKYKEGKF+LER  I
Sbjct: 61  MLTGLHTVRDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALI 106

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.98
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	96.38
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.31
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.2
PRK00222	142	methionine sulfoxide reductase B; Provisional	93.8
PRK05508	119	methionine sulfoxide reductase B; Provisional	92.97
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	91.13
PF14976	150	FAM72: FAM72 protein	90.56
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	89.37
COG0229	140	Conserved domain frequently associated with peptid	85.06
KOG0856	146	consensus Predicted pilin-like transcription facto	81.82

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=1.9e-52  Score=304.42  Aligned_cols=115  Identities=53%  Similarity=0.929  Sum_probs=110.2

Q ss_pred             Ccceeeeeecc--eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCC
Q 033435            1 MGRIFLVELKG--RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQ   78 (119)
Q Consensus         1 MGr~f~~yl~g--~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~   78 (119)
                      |||+|.++|++  +. |+|++|+||||+++||||++|+|++|+||||++|+||..|+.|+|.|+||+|+|+||+|+.|++
T Consensus         1 mgR~F~~~l~~~~~~-y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~   79 (122)
T KOG3399|consen    1 MGRLFEAMLEANHRL-YSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGT   79 (122)
T ss_pred             CcchHHHHhccCCce-EeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCC
Confidence            99999999999  58 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEEEEeccCCcceecCeEEEEeehhhhh-hhheeee
Q 033435           79 IVGWKYVAAHDKNQKYKEGKFVLERYRIGKY-VFELLVS  116 (119)
Q Consensus        79 ~lGWkY~~A~e~sqkYKEGkfILE~~~i~k~-~~~~~~~  116 (119)
                      .|||||+.|||+||||||||||||+++|.+. -+++.++
T Consensus        80 ~~GWkYe~a~e~sQkyKEGk~ilE~~~i~~~~g~~~~~~  118 (122)
T KOG3399|consen   80 GLGWKYEHAYEKSQKYKEGKFILELAEIFKPEGWDLEVG  118 (122)
T ss_pred             CcceeeeeccCchhhhcCcchHHHHHHhcCCCCchhhcC
Confidence            9999999999999999999999999999986 4666554

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.98  E-value=4.9e-33  Score=191.85  Aligned_cols=88  Identities=45%  Similarity=0.940  Sum_probs=84.6

Q ss_pred             EecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeec----EEEeeeeeeeCCCeeeeEEEEeccC
Q 033435           15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGM----HTVEDIFCCCCGQIVGWKYVAAHDK   90 (119)
Q Consensus        15 y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~----H~V~DI~C~~C~~~lGWkY~~A~e~   90 (119)
                      |.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||+.|+++
T Consensus         3 f~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~~   77 (96)
T PF03226_consen    3 FQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPEE   77 (96)
T ss_pred             EECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCHh
Confidence            999999999999999999  999999999998   8888889999999999    9999999999999999999999999


Q ss_pred             CcceecCeEEEEeehhhh
Q 033435           91 NQKYKEGKFVLERYRIGK  108 (119)
Q Consensus        91 sqkYKEGkfILE~~~i~k  108 (119)
                       |+||||+||||++.|..
T Consensus        78 -~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   78 -QKYKEGKFILEKASISS   94 (96)
T ss_pred             -HhhhCCEEEEEhhHEEE
Confidence             99999999999998853

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=96.38  E-value=0.0019  Score=46.95  Aligned_cols=89  Identities=17%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             EEecCCCCccccCCCCeeeecccc--CCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEEeccCC
Q 033435           14 YYKCRFCNSHLALADSVLSWSFNC--RRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKN   91 (119)
Q Consensus        14 ~y~C~~C~thLa~~~~lISk~F~G--~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e~s   91 (119)
                      .+.|++|.+.++..+||-.-.-+.  --.+.  |...+.+...|.+.....-+.+....|+|.+|++.+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            388999999999999987652110  01122  33555566665554445568889999999999999999887665556


Q ss_pred             cceecCeEEEEee
Q 033435           92 QKYKEGKFVLERY  104 (119)
Q Consensus        92 qkYKEGkfILE~~  104 (119)
                      +-.|.-.|+++..
T Consensus        82 P~L~iksfvv~~~   94 (123)
T PF11648_consen   82 PCLKIKSFVVELE   94 (123)
T ss_dssp             EEE-GGGEEEEET
T ss_pred             cEEEeeeeeeeec
Confidence            6777777875543

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.31  E-value=0.041  Score=40.51  Aligned_cols=70  Identities=20%  Similarity=0.423  Sum_probs=42.8

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEEecc
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHD   89 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e   89 (119)
                      -+ |.|+.|+++|=+++.    .|....|=.-.++.+..-.+....|..+  |+. -..|.|.+|+.+||--......
T Consensus        36 G~-Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~v~~~~D~s~--g~~-R~Ev~C~~Cg~HLGHVF~DGp~  105 (124)
T PF01641_consen   36 GI-YVCAVCGTPLFSSDT----KFDSGCGWPSFWQPIPGDAVKEREDFSH--GMV-RTEVRCARCGSHLGHVFDDGPP  105 (124)
T ss_dssp             EE-EEETTTS-EEEEGGG----EETSSSSSSEESSCSSTTSEEEEEEECT--SSE-EEEEEETTTCCEEEEEESTSST
T ss_pred             EE-EEcCCCCCccccCcc----cccCCcCCccccCcCChHHEEEeccccC--Cce-EEEEEecCCCCccccEeCCCCC
Confidence            45 999999999976653    4665566443344333323333333321  443 4579999999999977765544

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.20  E-value=0.052  Score=40.53  Aligned_cols=67  Identities=15%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-.-.+...+|..  -|+.. ..|.|.+|+.+||--...
T Consensus        39 G~-Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~D  105 (134)
T TIGR00357        39 GI-YVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEVVAYERDES--HGMIR-TEVRCRNCDAHLGHVFDD  105 (134)
T ss_pred             eE-EEccCCCCccccccc----hhcCCCCCcCcCcccCCCceEEeecCC--CCcEE-EEEEecCCCCccCcccCC
Confidence            45 999999999987765    355555543333444111223333322  24433 589999999999976543

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=93.80  E-value=0.053  Score=40.85  Aligned_cols=67  Identities=18%  Similarity=0.376  Sum_probs=41.4

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-.-.+...+|+.  -|+. =..|.|..|+.+||--...
T Consensus        42 G~-Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~s--~gm~-RtEv~C~~Cg~HLGHVF~D  108 (142)
T PRK00222         42 GI-YVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDTS--HGMV-RTEVRCANCDSHLGHVFPD  108 (142)
T ss_pred             eE-EEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeeccC--CCce-EEEEEeCCCCCccCcccCC
Confidence            45 999999999987743    466666644434443222222223321  1222 2579999999999977654

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=92.97  E-value=0.11  Score=38.21  Aligned_cols=63  Identities=19%  Similarity=0.450  Sum_probs=41.8

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.+..+-| .+...+|..   |  .=..|.|++|+.+||--..
T Consensus        32 G~-Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~-~v~~~~D~~---~--~RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         32 GT-YVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKG-AVKRIPDAD---G--RRTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             eE-EEecCCCCccccccc----cccCCCCCcccCccccc-ceEEEecCC---C--cEEEEEeCCCCCccCcccC
Confidence            45 999999999987764    46666664443444433 233344443   2  2467999999999996654

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=91.13  E-value=0.18  Score=41.71  Aligned_cols=63  Identities=22%  Similarity=0.453  Sum_probs=41.6

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-|-. -..++..   |+  =..|.|.+|+++||--..
T Consensus        35 G~-y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~-~~~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         35 GV-YLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAV-KRLPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             cE-EEcCCCCchhcCChh----hccCCCCCcCcCcccCCcc-EEEEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            45 999999999988654    4666666444455554432 2222222   33  488999999999997664

>PF14976 FAM72: FAM72 protein

Probab=90.56  E-value=0.67  Score=35.33  Aligned_cols=61  Identities=34%  Similarity=0.646  Sum_probs=40.8

Q ss_pred             EecCCCCccccCCCCeeeeccccCCceEEEeeccccccc----Cccceeeeeeec--------EEEeeeeeeeCCCeeee
Q 033435           15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIML----GPQEERLMLSGM--------HTVEDIFCCCCGQIVGW   82 (119)
Q Consensus        15 y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~----g~~e~r~m~TG~--------H~V~DI~C~~C~~~lGW   82 (119)
                      ..|+.|.+-|+...           =||.|..+ +|+.+    -||....-.+|.        =.++|+-|..|+..||+
T Consensus        16 L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~vGY   83 (150)
T PF14976_consen   16 LCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIVGY   83 (150)
T ss_pred             EECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCeeee
Confidence            78999999887643           24666555 44443    123333333343        26999999999999999


Q ss_pred             EEEEe
Q 033435           83 KYVAA   87 (119)
Q Consensus        83 kY~~A   87 (119)
                      -++..
T Consensus        84 hV~~P   88 (150)
T PF14976_consen   84 HVVVP   88 (150)
T ss_pred             EEEEE
Confidence            88754

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=89.37  E-value=0.36  Score=42.90  Aligned_cols=82  Identities=9%  Similarity=0.059  Sum_probs=48.7

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEEecc--
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHD--   89 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A~e--   89 (119)
                      -+ |.|+.|+++|=+++    ..|....|=.-.++.+-+-.+...+|..  -|++. ..|.|++|+++||-.......  
T Consensus       417 G~-y~c~~c~~pLf~s~----~Kf~sg~GWPsF~~~i~~~~v~~~~d~s--~g~~R-~Ev~c~~c~~HLGHvf~dgp~~~  488 (521)
T PRK14018        417 GI-YVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKVVTEHDDFS--YNMRR-TEVRSRAADSHLGHVFPDGPRDK  488 (521)
T ss_pred             EE-EEecCCCCccccCc----ccccCCCCCcccCcccCcCceEEeeccC--CCceE-EEEEECCCCCcCCcccCCCCCCC
Confidence            55 99999999998875    3466666643333333222223333322  24443 489999999999987755331  


Q ss_pred             CCcceecCeEEE
Q 033435           90 KNQKYKEGKFVL  101 (119)
Q Consensus        90 ~sqkYKEGkfIL  101 (119)
                      ..++|=.+---|
T Consensus       489 ~g~RyCiNs~~l  500 (521)
T PRK14018        489 GGLRYCINGASL  500 (521)
T ss_pred             CCCEeeeceeEE
Confidence            234554444333

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=85.06  E-value=1.2  Score=33.60  Aligned_cols=65  Identities=20%  Similarity=0.430  Sum_probs=41.3

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY   84 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY   84 (119)
                      -+ |.|..|+.+|=++++    .|....|=--.+.-+.+-.+...+|+  .-|++. ..|.|.+|+++||--.
T Consensus        41 Gi-Y~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~R-tEVrc~~c~sHLGHVF  105 (140)
T COG0229          41 GI-YVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVR-TEVRCANCDSHLGHVF  105 (140)
T ss_pred             ce-EEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEE-EEEEecCCCCcccccc
Confidence            56 999999999977764    45555553333444433334444443  234443 4789999999999543

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=81.82  E-value=1.6  Score=33.18  Aligned_cols=67  Identities=19%  Similarity=0.384  Sum_probs=39.1

Q ss_pred             cceeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeee-eeecEEEeeeeeeeCCCeeeeEEE
Q 033435           10 KGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLM-LSGMHTVEDIFCCCCGQIVGWKYV   85 (119)
Q Consensus        10 ~g~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m-~TG~H~V~DI~C~~C~~~lGWkY~   85 (119)
                      +.-+ |.|..|+++|-+++    ..|....|=--.|+.+ +  .|....+.. .-|.| =.+|.|..|+.+||--.+
T Consensus        51 e~Gv-Y~C~~C~~pLykS~----tKfdsgcGWPAF~e~i-~--~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   51 EEGV-YVCAGCGTPLYKST----TKFDSGCGWPAFFEAI-G--PGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CCce-EEEeecCCcccccc----ccccCCCCCchhhhcc-C--CCceeeccccCCCCc-ceEEEEeecCCceeeeec
Confidence            3366 99999999997764    3466555542223332 1  222111111 11122 458999999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	95.95
3ga3_A	133	Interferon-induced helicase C domain-containing pr	95.53
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	94.4
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	93.4
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	93.08
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	92.85
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	92.72
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	92.21
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	91.93
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	91.01
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	90.95
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	89.53
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	86.76
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	85.92
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	85.39

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=95.95  E-value=0.0055  Score=45.19  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             ecceeEEecCCCCccccCCCCeeeec--cccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435            9 LKGRSYYKCRFCNSHLALADSVLSWS--FNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (119)
Q Consensus         9 l~g~~~y~C~~C~thLa~~~~lISk~--F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (119)
                      .++.+.+.|++|.+.+++.+||-.-.  -+=.-+++  |...+.+..+|..-.....+..+-..|.|.+|++.+|-....
T Consensus         8 ~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~y   85 (145)
T 3eqt_A            8 PVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIY   85 (145)
T ss_dssp             CGGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEE
T ss_pred             CchheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEe
Confidence            34444599999999999999975431  11001111  112333322322211123445677889999999999988877


Q ss_pred             eccCCcceecCeEEEEeehh
Q 033435           87 AHDKNQKYKEGKFVLERYRI  106 (119)
Q Consensus        87 A~e~sqkYKEGkfILE~~~i  106 (119)
                      ---+=+-.|.-.|++|...-
T Consensus        86 k~~~LP~LkIksFVve~~~g  105 (145)
T 3eqt_A           86 KSVKLPVLKVRSMLLETPQG  105 (145)
T ss_dssp             TTEEEEEECGGGEEEEETTE
T ss_pred             ccccCceEeEEEEEEEcCCC
Confidence            66667888999999987543

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=95.53  E-value=0.013  Score=42.65  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=60.3

Q ss_pred             ecceeEEecCCCCccccCCCCeeee--ccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435            9 LKGRSYYKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (119)
Q Consensus         9 l~g~~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (119)
                      .++.+.+.|++|.+.+++.+||-.-  +-.=.-+++  |...+.+. +++.-.....+..+-..|.|. |++.+|-....
T Consensus         7 ~~s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~-~~~~~~k~f~d~~~~g~I~C~-Cgq~WG~~m~y   82 (133)
T 3ga3_A            7 NPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKALQKKCADYQINGEIICK-CGQAWGTMMVH   82 (133)
T ss_dssp             CGGGEEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEE-CCTTTCEECSSCEEEEEEEET-TSCEEEEEEEE
T ss_pred             CcceEEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEec-CCCCccchhccccCCceEEEe-cCChhhhhEEe
Confidence            3444559999999999999997543  111111111  12333333 232221224667788999999 99999988776


Q ss_pred             eccCCcceecCeEEEEee
Q 033435           87 AHDKNQKYKEGKFVLERY  104 (119)
Q Consensus        87 A~e~sqkYKEGkfILE~~  104 (119)
                      ---+=+-.|.-.|+||..
T Consensus        83 k~~~LP~LkIksFVve~~  100 (133)
T 3ga3_A           83 KGLDLPCLKIRNFVVVFK  100 (133)
T ss_dssp             TTEEEEEECGGGEEEEET
T ss_pred             ccccCceEEEEEEEEEcC
Confidence            655677888899998873

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=94.40  E-value=0.04  Score=40.57  Aligned_cols=80  Identities=20%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             eeEEecCCCCccccCCCCee----------eeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCe
Q 033435           12 RSYYKCRFCNSHLALADSVL----------SWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQI   79 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lI----------Sk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~   79 (119)
                      .+.+.|++|.+.+++.+||-          .+.|.          ..+.+..-+..  ...-+..+-..|.|.  +|++.
T Consensus        25 ~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~--k~f~d~~~~g~I~C~~~~Cg~~   92 (145)
T 2qfd_A           25 NKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKP--KQFSSFEKRAKIFCARQNCSHD   92 (145)
T ss_dssp             CCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSC--CCCSSEEEEEEEEECSTTTCCE
T ss_pred             ceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCccc--chhhceeCCceEEeCCcccCcc
Confidence            34599999999999999983          33443          22333311111  124455678999999  99999


Q ss_pred             eeeEEEEeccCCcceecCeEEEEe
Q 033435           80 VGWKYVAAHDKNQKYKEGKFVLER  103 (119)
Q Consensus        80 lGWkY~~A~e~sqkYKEGkfILE~  103 (119)
                      +|-....---+-+-.|.-.|+||.
T Consensus        93 WG~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           93 WGIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEEETTEEEEEECGGGEEEEC
T ss_pred             hhceEEEccccCceEEEEEEEEEe
Confidence            998877665668888999999986

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=93.40  E-value=0.041  Score=40.54  Aligned_cols=66  Identities=11%  Similarity=0.123  Sum_probs=42.1

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-+ .+...+|+.  -|+. =..|.|.+|+.+||--...
T Consensus        41 G~-Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           41 GL-YVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMI-RTEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             EE-EEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSC-EEEEEETTTCCEEEEEESC
T ss_pred             EE-EEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCce-EEEEEcCCCCCccCCccCC
Confidence            45 999999999877653    46555664333444434 333444432  2443 2479999999999976643

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=93.08  E-value=0.064  Score=39.56  Aligned_cols=68  Identities=7%  Similarity=0.073  Sum_probs=41.1

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEEe
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAA   87 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A   87 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-.-.+...+|+.  -|+. =..|.|++|+.+||--....
T Consensus        42 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~DG  109 (146)
T 3hcg_A           42 GI-YVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPDG  109 (146)
T ss_dssp             EE-EEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESCS
T ss_pred             EE-EEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCCC
Confidence            45 999999999876653    466556643323333221222233432  1333 35789999999999776543

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=92.85  E-value=0.05  Score=38.83  Aligned_cols=85  Identities=21%  Similarity=0.289  Sum_probs=56.0

Q ss_pred             EecCCCCccccCCCCeeee--ccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCeeeeEEEEeccC
Q 033435           15 YKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAAHDK   90 (119)
Q Consensus        15 y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A~e~   90 (119)
                      +.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+...+. .+. .-+.++-..|.|.  +|++.+|-....---+
T Consensus         6 llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~~~   81 (121)
T 3lrr_A            6 LLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKTFE   81 (121)
T ss_dssp             EEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETTEE
T ss_pred             EECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecccc
Confidence            8999999999999997432  1111111111  12233322222 222 3456778899999  9999999887766656


Q ss_pred             CcceecCeEEEEe
Q 033435           91 NQKYKEGKFVLER  103 (119)
Q Consensus        91 sqkYKEGkfILE~  103 (119)
                      =+-.|.-.|++|.
T Consensus        82 LP~LkI~sfvve~   94 (121)
T 3lrr_A           82 IPVIKIESFVVED   94 (121)
T ss_dssp             EEEECGGGEEEEE
T ss_pred             CceEEEEEEEEEe
Confidence            7888999999987

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=92.72  E-value=0.085  Score=38.14  Aligned_cols=85  Identities=16%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             EecCCCCccccCCCCeeee--ccccCCceEEEeecccccccCccceeeeeeecEEEeeeeee--eCCCeeeeEEEEeccC
Q 033435           15 YKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVAAHDK   90 (119)
Q Consensus        15 y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~--~C~~~lGWkY~~A~e~   90 (119)
                      +.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+..-+. .+. .-+.++-..|.|.  +|++.+|-....---+
T Consensus         8 llCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~~~   83 (131)
T 4a2v_A            8 LLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLTFD   83 (131)
T ss_dssp             EEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETTEE
T ss_pred             EEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecCcc
Confidence            8999999999999997432  1110111111  12222211111 111 2355678889999  9999988776654444


Q ss_pred             -CcceecCeEEEEe
Q 033435           91 -NQKYKEGKFVLER  103 (119)
Q Consensus        91 -sqkYKEGkfILE~  103 (119)
                       =+-.|.-.|++|.
T Consensus        84 ~LP~LkIksFVve~   97 (131)
T 4a2v_A           84 NLPVIKIKSFVMES   97 (131)
T ss_dssp             EEEEECGGGEEECC
T ss_pred             cCceEeEEEEEEEe
Confidence             5678888999886

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=92.21  E-value=0.065  Score=40.21  Aligned_cols=66  Identities=20%  Similarity=0.441  Sum_probs=40.9

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-+-.+...+|..  -|+ .-..|.|..|+.+||--..
T Consensus        72 Gi-Y~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           72 GI-YHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             EE-EEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred             eE-EEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence            45 999999999877653    465556643333333222233334432  133 3457999999999997664

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=91.93  E-value=0.067  Score=38.49  Aligned_cols=64  Identities=16%  Similarity=0.270  Sum_probs=37.3

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY   84 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY   84 (119)
                      -+ |.|+.|.++|=++++=    |....|=.-.++.+-+-.+-..+++   .|+. ...|.|++|+.+||=-.
T Consensus        19 G~-Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GV-YVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EE-EEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             EE-EEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            45 9999999999887653    5555553222222211111122221   1221 35799999999999654

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=90.95  E-value=0.091  Score=36.79  Aligned_cols=64  Identities=16%  Similarity=0.297  Sum_probs=38.0

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY   84 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY   84 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-.-.+...+|.   .++ .-..|.|++|+.+||--.
T Consensus        12 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           12 GV-YVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             EE-EEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred             EE-EEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence            45 999999999876653    45555564333333321111112221   121 246899999999999766

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=89.53  E-value=0.089  Score=38.99  Aligned_cols=67  Identities=21%  Similarity=0.494  Sum_probs=41.2

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-.-.+...+|+.+  |+. =..|.|..|+.+||--...
T Consensus        60 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           60 GI-YRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMV-RCEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             SE-EEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSC-EEEEEETTEEEEEEEEEEC
T ss_pred             EE-EEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--Cce-EEEEEeCCCCCcCCcccCC
Confidence            45 999999999877653    4665566433333332212233333321  332 3579999999999977654

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=86.76  E-value=0.32  Score=39.66  Aligned_cols=67  Identities=12%  Similarity=0.061  Sum_probs=40.6

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVA   86 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~   86 (119)
                      -+ |.|+.|+++|=+++    ..|....|=.-.++.+-.-.+...+|+.+  |+. =..|.|.+|+.+||--...
T Consensus       208 G~-Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~-RtEv~c~~c~~HLGHVF~D  274 (313)
T 3e0m_A          208 GI-YVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLSH--GME-RIEVRSRSGSAHLGHVFTD  274 (313)
T ss_dssp             EE-EEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECCT--TCC-EEEEEESSSCCEEEEEESC
T ss_pred             eE-EEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCCC--CcE-EEEEECCCCCCccCcccCC
Confidence            45 99999999987664    34665566433333332212222333321  443 3589999999999976643

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=85.92  E-value=0.16  Score=37.75  Aligned_cols=66  Identities=21%  Similarity=0.456  Sum_probs=37.5

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (119)
                      -+ |.|+.|+++|=++++    .|....|=.-.++.+-.-.+...+|..  -|+. =..|.|.+|+.+||--..
T Consensus        49 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  114 (154)
T 3hcj_A           49 GV-YTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP  114 (154)
T ss_dssp             EE-EEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred             EE-EEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence            45 999999999876653    355445532222222111111222221  1332 257999999999997654

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=85.39  E-value=0.25  Score=36.27  Aligned_cols=66  Identities=18%  Similarity=0.361  Sum_probs=39.0

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccc--------cCccceeeeeeecEEEeeeeeeeCCCeeeeE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIM--------LGPQEERLMLSGMHTVEDIFCCCCGQIVGWK   83 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~--------~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWk   83 (119)
                      -+ |.|+.|+++|=++++    .|....|=.- |.+.+++.        +...+|+.  -|+. =..|.|+.|+.+||=-
T Consensus        36 G~-Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHV  106 (143)
T 2l1u_A           36 GM-YHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHV  106 (143)
T ss_dssp             EE-EEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEE
T ss_pred             eE-EEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCcc
Confidence            45 999999999877654    4555555322 33444211        11122221  1332 3579999999999976


Q ss_pred             EEE
Q 033435           84 YVA   86 (119)
Q Consensus        84 Y~~   86 (119)
                      ...
T Consensus       107 F~D  109 (143)
T 2l1u_A          107 FPD  109 (143)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	89.96
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	89.62

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=89.96  E-value=0.066  Score=37.49  Aligned_cols=68  Identities=7%  Similarity=0.073  Sum_probs=39.9

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEEEe
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAA   87 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~~A   87 (119)
                      -+ |.|+.|+++|=.+++    .|....|=.-.++.+-+-.+....+..  -|+.. ..|.|.+|+.+||=-....
T Consensus        41 G~-Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~s--~gm~R-~Ev~C~~Cg~HLGHVF~DG  108 (144)
T d1l1da_          41 GI-YVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--FNMRR-TEVRSRAADSHLGHVFPDG  108 (144)
T ss_dssp             EE-EEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCS
T ss_pred             Cc-eEeccccceeeehhh----cccCCccceeeccccccccccceeccc--ccccc-eeeEecCCCCccCcccCCC
Confidence            45 999999999976554    355555533223333332222222211  12222 4899999999999766543

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.62  E-value=0.066  Score=37.50  Aligned_cols=65  Identities=11%  Similarity=0.120  Sum_probs=38.1

Q ss_pred             eeEEecCCCCccccCCCCeeeeccccCCceEEEeecccccccCccceeeeeeecEEEeeeeeeeCCCeeeeEEE
Q 033435           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (119)
Q Consensus        12 ~~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~vvNv~~g~~e~r~m~TG~H~V~DI~C~~C~~~lGWkY~   85 (119)
                      -+ |.|+.|+++|=+.++    .|....|=.--++.+-+-.. ..+|..  -|+ .=..|.|++|+.+||--..
T Consensus        40 G~-Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          40 GL-YVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             EE-EEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEE
T ss_pred             ce-EEeccccchhhhhhh----hhccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCC
Confidence            44 999999999977765    35555554333333322211 122211  111 1367899999999996554