Citrus Sinensis ID: 033440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPNQF
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
malwmdaesepkteseKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQnvlsdsensVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILcsgshpnqf
Flexible Loop (DISEMBL)
malwmdaesepktesekaDLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPNQF
Low Complexity Region (SEG)
MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPNQF
Disordered region (IsUnstruct)
****************************************YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCS*******
Disordered Region (DISOPRED)
MALW******************************KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP***
Disordered Region (DISEMBL)
******************DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPNQF
Disordered Region (DISPRO)
********SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPNQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
P53043	513	Serine/threonine-protein	yes	no	0.647	0.150	0.385	7e-08
O95801	387	Tetratricopeptide repeat	yes	no	0.899	0.276	0.327	8e-08
Q5EA11	388	Tetratricopeptide repeat	yes	no	0.722	0.221	0.352	8e-08
Q28IV3	657	RNA polymerase II-associa	no	no	0.714	0.129	0.413	3e-07
Q6NU95	660	RNA polymerase II-associa	N/A	no	0.739	0.133	0.4	8e-07
Q54M20	397	Tetratricopeptide repeat	yes	no	0.663	0.198	0.329	1e-06
P33313	385	Hsp70/Hsp90 co-chaperone	no	no	0.756	0.233	0.371	1e-06
Q9D706	660	RNA polymerase II-associa	yes	no	0.731	0.131	0.361	4e-06
Q8R3H9	386	Tetratricopeptide repeat	no	no	0.722	0.222	0.340	4e-06
Q07617	926	Sperm-associated antigen	no	no	0.714	0.091	0.369	6e-06

>sp|P53043|PPT1_YEAST Serine/threonine-protein phosphatase T OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PPT1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 6/83 (7%)

Query: 24  AALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83
            A   + A+E K +GN +VK+  KH+  AI+ YT AI+     DS  S+ ++NRA  +  
Sbjct: 5   TAADRAKALERKNEGNVFVKE--KHFLKAIEKYTEAIDL----DSTQSIYFSNRAFAHFK 58

Query: 84  LGNYRRAFTDAEEALKLCPTNVK 106
           + N++ A  D +EA+KL P N+K
Sbjct: 59  VDNFQSALNDCDEAIKLDPKNIK 81

Protein phosphatase that specifically binds to and dephosphorylates the molecular chaperone Hsp90 (HSC82 and HSP82). Dephosphorylation positively regulates the Hsp90 chaperone machinery.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|O95801|TTC4_HUMAN Tetratricopeptide repeat protein 4 OS=Homo sapiens GN=TTC4 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 7   AESEPKTESEKADLDAIAALKESAAIE----LKEKGNEYVKKGKKHYSDAIDCYTRAINQ 62
           +E +P+   + A L +I   +E +  E     K++GN+Y K+  K Y  A+  YT  + +
Sbjct: 51  SEIDPRENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKE--KDYKKAVISYTEGLKK 108

Query: 63  NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH 115
                  N+VLY NRA     LGN+R A  D   A KL P ++K +I  +  H
Sbjct: 109 KCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRGALCH 161

Homo sapiens (taxid: 9606)

>sp|Q5EA11|TTC4_BOVIN Tetratricopeptide repeat protein 4 OS=Bos taurus GN=TTC4 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
           E  A   K++GN+Y K+  K Y  A+  YT  + +       N+VLY NRA     LGN+
Sbjct: 76  EDQARTYKDEGNDYFKE--KDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNF 133

Query: 88  RRAFTDAEEALKLCPTNVKVVILCSGSH 115
           R +  D   A KL P ++K +I  +  H
Sbjct: 134 RSSLNDVTAARKLKPCHLKAIIRGASCH 161

Bos taurus (taxid: 9913)

>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 9   SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS 68
           +E  +ESE  D D I    E A +E KEKGN Y K G   Y +AI+CYTR ++    +D 
Sbjct: 111 NESSSESECGDEDGITVDTEKALLE-KEKGNNYFKSG--QYDEAIECYTRGMD----ADP 163

Query: 69  ENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100
            N+VL  NRA     L  Y  A +D   A+ L
Sbjct: 164 YNAVLPTNRASAFFRLKKYAVAESDCNLAIAL 195

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 6   DAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL 65
           D  +E  ++SE  D DAI    E A  E KEKGN Y K GK  Y +AI+CYTR ++    
Sbjct: 108 DNSNETSSDSECGDEDAITVDTEKALSE-KEKGNNYFKSGK--YDEAIECYTRGMD---- 160

Query: 66  SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100
           +D  N++L  NRA     L  +  A +D   A+ L
Sbjct: 161 ADPYNAILPTNRASAFFRLKKFAVAESDCNLAIAL 195

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus laevis (taxid: 8355)

>sp|Q54M20|TTC4_DICDI Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum GN=ttc4 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
           E  A   K  GN+Y ++GK  ++DA+  Y +A++      ++NS+  +NRA +N+ LGNY
Sbjct: 87  EERAETFKNLGNDYFREGKSRFNDALYYYNKALSVKCNDMTKNSIYLSNRAAINMELGNY 146

Query: 88  RRAFTDAEEALKLCPTNVK 106
                D   +++  P N+K
Sbjct: 147 GLVIKDCTVSVEFNPLNMK 165

Dictyostelium discoideum (taxid: 44689)

>sp|P33313|CNS1_YEAST Hsp70/Hsp90 co-chaperone CNS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CNS1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 15  SEKADLDAIAAL-----KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE 69
            E  +L+A+ AL         A   K++GNE  K   K + DA + Y++ +       S 
Sbjct: 62  GENVELEALKALAYEGEPHEIAENFKKQGNELYKA--KRFKDARELYSKGLAVECEDKSI 119

Query: 70  NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           N  LYANRA   L L NYRR   D  +AL + P NVK
Sbjct: 120 NESLYANRAACELELKNYRRCIEDCSKALTINPKNVK 156

Co-chaperone that binds to the molecular chaperones Hsp90 (HSC82 and HSP82) and Hsp70 (SSA1). Stimulates SSA1 ATPase activity, but not Hsp90 ATPase activity. Involved in only a subset of Hsp90 functions.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 13  TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           ++  ++D D I    + A + LKEKGN+Y K+GK  Y +AI+CYT+ ++    +D  N V
Sbjct: 117 SQESESDEDGIRVDSQKALV-LKEKGNKYFKQGK--YDEAIECYTKGMD----ADPYNPV 169

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           L  NRA     L  +  A +D   A+ L  T  K
Sbjct: 170 LPTNRASAYFRLKKFAVAESDCNLAIALSRTYTK 203

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Mus musculus (taxid: 10090)

>sp|Q8R3H9|TTC4_MOUSE Tetratricopeptide repeat protein 4 OS=Mus musculus GN=Ttc4 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
           E  A   K++GN+Y K+  K Y  A+  Y+  + +       N+VLY NRA     LGN 
Sbjct: 76  EEQAKTYKDEGNDYFKE--KDYKKAVLSYSEGLKKKCADPDLNAVLYTNRAAAQYYLGNV 133

Query: 88  RRAFTDAEEALKLCPTNVKVVILCSGSH 115
           R +  D   A KL P ++K +I  +  H
Sbjct: 134 RSSLNDVLAAKKLKPGHLKAIIRGALCH 161

Mus musculus (taxid: 10090)

>sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
           K+  A   KEKGNE    G   Y +A+  YTR+I     S     V Y NRA   + L N
Sbjct: 205 KDFLATREKEKGNEAFNSG--DYEEAVMYYTRSI-----SALPTVVAYNNRAQAEIKLQN 257

Query: 87  YRRAFTDAEEALKLCPTNVKVVILCSGSHPNQ 118
           +  AF D E+ L+L P NVK ++  + ++ +Q
Sbjct: 258 WNSAFQDCEKVLELEPGNVKALLRRATTYKHQ 289

Plays a role in fertilization. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
224070033	370	predicted protein [Populus trichocarpa]	0.907	0.291	0.805	3e-45
225437945	364	PREDICTED: tetratricopeptide repeat prot	0.890	0.291	0.811	3e-44
356537202	360	PREDICTED: tetratricopeptide repeat prot	0.941	0.311	0.767	1e-43
255575041	299	heat shock protein 70 (HSP70)-interactin	0.907	0.361	0.787	2e-43
449509065	309	PREDICTED: tetratricopeptide repeat prot	0.907	0.349	0.768	3e-43
449468596	360	PREDICTED: tetratricopeptide repeat prot	0.907	0.3	0.768	6e-43
297843222	360	binding protein [Arabidopsis lyrata subs	0.907	0.3	0.759	1e-42
255634538	230	unknown [Glycine max]	0.907	0.469	0.768	3e-42
356545912	360	PREDICTED: tetratricopeptide repeat prot	0.907	0.3	0.768	5e-42
3142297	427	Contains similarity to serine/threonine	0.915	0.255	0.733	2e-41

>gi|224070033|ref|XP_002303105.1| predicted protein [Populus trichocarpa] gi|222844831|gb|EEE82378.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 99/108 (91%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWM+A SEPKTESE ADL AI+ALK S A+ELKEKGNEYVK GKKHYSDAI+CYTRAI
Sbjct: 1   MALWMEAGSEPKTESEIADLQAISALKHSTALELKEKGNEYVKMGKKHYSDAIECYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
           NQ+ LSDS+NS++Y+NRAHVNLLLGNYRRA TDA+EA+KLCPTNVK +
Sbjct: 61  NQDALSDSDNSIVYSNRAHVNLLLGNYRRALTDAQEAIKLCPTNVKAM 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437945|ref|XP_002269637.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Vitis vinifera] gi|297744240|emb|CBI37210.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/106 (81%), Positives = 95/106 (89%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWM+  SEP T+SE ADLDAI ALKESAA+ELKEKGN+YVK GKKHY+DAIDCYT+AI
Sbjct: 1   MALWMETGSEPNTQSEIADLDAITALKESAALELKEKGNQYVKLGKKHYADAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           NQ  LSD ENSV+YANRAHVNLLLGNYRRA  DA+EA+KLCPTNVK
Sbjct: 61  NQKALSDPENSVIYANRAHVNLLLGNYRRALMDAQEAIKLCPTNVK 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537202|ref|XP_003537118.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Glycine max]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 96/112 (85%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWM+  SEP TESEKADL+AIAALKESAA E KEKGN+YVK GKKHYSDAIDCYTRAI
Sbjct: 1   MALWMEKGSEPLTESEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCS 112
           +Q  LSDSE S+L+ANRAHVNLLLGN RRA TD+ EALKLCP+N+K +   S
Sbjct: 61  DQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRAS 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575041|ref|XP_002528426.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223532162|gb|EEF33968.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 99/108 (91%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALW++A SEP TESE ADL+AI A+KESAA+ELKE+GN+YVK GKKHYS+AIDCYTRAI
Sbjct: 1   MALWLEAGSEPTTESEIADLEAINAIKESAALELKEQGNKYVKMGKKHYSNAIDCYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
           NQ VLSDSENS++Y+NRAHVNLLLGNYRRA +DAEEA+KLC TNVK +
Sbjct: 61  NQKVLSDSENSMIYSNRAHVNLLLGNYRRALSDAEEAIKLCATNVKAL 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509065|ref|XP_004163482.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Cucumis sativus]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 96/108 (88%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWM+  S P TE+EKADLDAIAALKES+A+E KEKGNE+V+ G+KHY+DAIDCYT+AI
Sbjct: 1   MALWMEDGSNPLTENEKADLDAIAALKESSALEFKEKGNEFVRLGRKHYTDAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
           NQ  LS+SENSVLYANRAHVNLLLGNYRRA  DAEEA+ LCPTN+K +
Sbjct: 61  NQKALSNSENSVLYANRAHVNLLLGNYRRALNDAEEAINLCPTNIKAI 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468596|ref|XP_004152007.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Cucumis sativus]

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 96/108 (88%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWM+  S P TE+EKADLDAIAALKES+A+E KEKGNE+V+ G+KHY+DAIDCYT+AI
Sbjct: 1   MALWMEDGSNPLTENEKADLDAIAALKESSALEFKEKGNEFVRLGRKHYTDAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
           NQ  LS+SENSVLYANRAHVNLLLGNYRRA  DAEEA+ LCPTN+K +
Sbjct: 61  NQKALSNSENSVLYANRAHVNLLLGNYRRALNDAEEAINLCPTNIKAI 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843222|ref|XP_002889492.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335334|gb|EFH65751.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 98/108 (90%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWMDA + P TE+EKADL+AI+ALKESAAIE KE+GN+ V+KGKKHYS+AIDCYT+AI
Sbjct: 1   MALWMDAGATPITENEKADLEAISALKESAAIEFKEQGNDCVRKGKKHYSEAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
           NQ VLSDSE S+L++NR+HVNLLLGNYRRA TDAEE+++LCP NVK V
Sbjct: 61  NQGVLSDSETSILFSNRSHVNLLLGNYRRALTDAEESMRLCPHNVKAV 108

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634538|gb|ACU17632.1| unknown [Glycine max]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 94/108 (87%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWM+  SEP TE+EKADL+AIAALKESAA E KEKGN+YVK GKKHYSDAID YTRAI
Sbjct: 1   MALWMEKGSEPLTETEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDYYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
           +Q  LSDSE S+L+ANRAHVNLLLGN RRA TD+ EALKLCP+N+K +
Sbjct: 61  DQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAI 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545912|ref|XP_003541377.1| PREDICTED: tetratricopeptide repeat protein 4 homolog [Glycine max]

 Score =  174 bits (441), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 94/108 (87%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWM+  SEP TE+EKADL+AIAALKESAA E KEKGN+YVK GKKHYSDAID YTRAI
Sbjct: 1   MALWMEKGSEPLTETEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDYYTRAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
           +Q  LSDSE S+L+ANRAHVNLLLGN RRA TD+ EALKLCP+N+K +
Sbjct: 61  DQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAI 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3142297|gb|AAC16748.1| Contains similarity to serine/threonine protein phosphatase gb|X83099 from S. cerevisiae [Arabidopsis thaliana]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 96/109 (88%)

Query: 1   MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
           MALWMDA + P TE EKADL+AI+ALKES AIE KE+GNE V+KGKKHYS+AIDCYT+AI
Sbjct: 1   MALWMDAGATPTTEKEKADLEAISALKESTAIEFKEEGNECVRKGKKHYSEAIDCYTKAI 60

Query: 61  NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109
           +Q VLSDSE S+L++NR+HVNLLLGNYRRA TDAEE+++L P NVKV +
Sbjct: 61  SQGVLSDSETSILFSNRSHVNLLLGNYRRALTDAEESMRLSPHNVKVAV 109

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2020225	360	TPR2 "tetratricopeptide repeat	0.907	0.3	0.740	1.4e-39
ZFIN|ZDB-GENE-040426-1021	402	ttc4 "tetratricopeptide repeat	0.672	0.199	0.414	1.2e-09
SGD|S000003355	513	PPT1 "Protein serine/threonine	0.638	0.148	0.390	5e-09
ZFIN|ZDB-GENE-040704-72	320	sgta "small glutamine-rich tet	0.588	0.218	0.407	1.2e-08
CGD|CAL0005143	390	CNS1 [Candida albicans (taxid:	0.747	0.228	0.385	1.4e-08
UNIPROTKB|Q5ABB8	390	CNS1 "Putative uncharacterized	0.747	0.228	0.385	1.4e-08
DICTYBASE|DDB_G0286253	397	ttc4 "tetratricopeptide repeat	0.815	0.244	0.292	2.3e-08
SGD|S000000359	385	CNS1 "TPR-containing co-chaper	0.747	0.231	0.385	3.6e-08
UNIPROTKB|E2RJK8	309	TOMM34 "Uncharacterized protei	0.773	0.297	0.386	4.9e-08
RGD|1309029	309	Tomm34 "translocase of outer m	0.815	0.313	0.387	6.3e-08

TAIR|locus:2020225 TPR2 "tetratricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 80/108 (74%), Positives = 95/108 (87%)

Query:     1 MALWMDAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAI 60
             MALWMDA + P TE EKADL+AI+ALKES AIE KE+GNE V+KGKKHYS+AIDCYT+AI
Sbjct:     1 MALWMDAGATPTTEKEKADLEAISALKESTAIEFKEEGNECVRKGKKHYSEAIDCYTKAI 60

Query:    61 NQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
             +Q VLSDSE S+L++NR+HVNLLLGNYRRA TDAEE+++L P NVK V
Sbjct:    61 SQGVLSDSETSILFSNRSHVNLLLGNYRRALTDAEESMRLSPHNVKAV 108

GO:0005737 "cytoplasm" evidence=ISM

GO:0051879 "Hsp90 protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-1021 ttc4 "tetratricopeptide repeat domain 4" [Danio rerio (taxid:7955)]

 Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 34/82 (41%), Positives = 46/82 (56%)

Query:    28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
             E  A  LK++GNEY K+  K Y  A+  YT  +  + ++   N+VLY NRA  +  LGN 
Sbjct:    76 EEKARSLKDEGNEYFKE--KKYKKAVVSYTEGLKTSCVNPELNAVLYTNRAAAHFHLGNM 133

Query:    88 RRAFTDAEEALKLCPTNVKVVI 109
             R A  DA  A KL P + K +I
Sbjct:   134 RSALNDATAAKKLKPDHNKAII 155

GO:0003779 "actin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000003355 PPT1 "Protein serine/threonine phosphatase, regulates Hsp90 chaperone by af" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 143 (55.4 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 32/82 (39%), Positives = 50/82 (60%)

Query:    25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84
             A   + A+E K +GN +VK+  KH+  AI+ YT AI+     DS  S+ ++NRA  +  +
Sbjct:     6 AADRAKALERKNEGNVFVKE--KHFLKAIEKYTEAIDL----DSTQSIYFSNRAFAHFKV 59

Query:    85 GNYRRAFTDAEEALKLCPTNVK 106
              N++ A  D +EA+KL P N+K
Sbjct:    60 DNFQSALNDCDEAIKLDPKNIK 81

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA;ISS;IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS;IDA

ZFIN|ZDB-GENE-040704-72 sgta "small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/76 (40%), Positives = 45/76 (59%)

Query:    31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
             A +LK +GN ++K+  ++YS A+DCYT+AI      D  N+V Y NRA  +  L NY  A
Sbjct:   101 AEQLKNEGNNHMKE--ENYSSAVDCYTKAIEL----DQRNAVYYCNRAAAHSKLENYTEA 154

Query:    91 FTDAEEALKLCPTNVK 106
               D E A+ + P+  K
Sbjct:   155 MGDCERAIAIDPSYSK 170

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0005143 CNS1 [Candida albicans (taxid:5476)]

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 37/96 (38%), Positives = 49/96 (51%)

Query:    16 EKADLDAIAALK-----ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN 70
             E  +L+A+ +L      +  A   K +GN   K   K Y DAI  YT+ +  N   D+ N
Sbjct:    70 ENVNLEALKSLAYEGDPDEIASNFKNQGNNCYKF--KKYKDAIIFYTKGLEVNCDVDAIN 127

Query:    71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
             S LY NRA  NL L NYRR   D ++ L L   N+K
Sbjct:   128 SALYLNRAACNLELKNYRRCIEDCKKVLMLDEKNIK 163

GO:0035690 "cellular response to drug" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

UNIPROTKB|Q5ABB8 CNS1 "Putative uncharacterized protein CNS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 37/96 (38%), Positives = 49/96 (51%)

Query:    16 EKADLDAIAALK-----ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN 70
             E  +L+A+ +L      +  A   K +GN   K   K Y DAI  YT+ +  N   D+ N
Sbjct:    70 ENVNLEALKSLAYEGDPDEIASNFKNQGNNCYKF--KKYKDAIIFYTKGLEVNCDVDAIN 127

Query:    71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
             S LY NRA  NL L NYRR   D ++ L L   N+K
Sbjct:   128 SALYLNRAACNLELKNYRRCIEDCKKVLMLDEKNIK 163

GO:0035690 "cellular response to drug" evidence=IMP

DICTYBASE|DDB_G0286253 ttc4 "tetratricopeptide repeat domain 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 135 (52.6 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 29/99 (29%), Positives = 52/99 (52%)

Query:    10 EPKTESEKADLDAIA--ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD 67
             EP +    A   +++     E  A   K  GN+Y ++GK  ++DA+  Y +A++      
Sbjct:    67 EPSSNQYLAAFQSLSNDCTPEERAETFKNLGNDYFREGKSRFNDALYYYNKALSVKCNDM 126

Query:    68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
             ++NS+  +NRA +N+ LGNY     D   +++  P N+K
Sbjct:   127 TKNSIYLSNRAAINMELGNYGLVIKDCTVSVEFNPLNMK 165

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000000359 CNS1 "TPR-containing co-chaperone" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 37/96 (38%), Positives = 50/96 (52%)

Query:    16 EKADLDAIAALK-ESAAIEL----KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN 70
             E  +L+A+ AL  E    E+    K++GNE  K   K + DA + Y++ +       S N
Sbjct:    63 ENVELEALKALAYEGEPHEIAENFKKQGNELYKA--KRFKDARELYSKGLAVECEDKSIN 120

Query:    71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
               LYANRA   L L NYRR   D  +AL + P NVK
Sbjct:   121 ESLYANRAACELELKNYRRCIEDCSKALTINPKNVK 156

GO:0006457 "protein folding" evidence=IGI;IPI

GO:0005737 "cytoplasm" evidence=IEA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

UNIPROTKB|E2RJK8 TOMM34 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 39/101 (38%), Positives = 60/101 (59%)

Query:     7 AESEPK-TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL 65
             A+S+ K T + K  + +   ++ + A  LKE+GNE VKKG  ++  AI+ Y+ +++    
Sbjct:   170 AKSKFKETTTAKTTVPSAGDVERARA--LKEEGNELVKKG--NHKKAIEKYSESLS---F 222

Query:    66 SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
             SD E S  Y+NRA  +L+L  Y+ A  D  EAL+L   NVK
Sbjct:   223 SDME-SATYSNRALCHLVLKQYKEAVKDCTEALRLDGKNVK 262

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

RGD|1309029 Tomm34 "translocase of outer mitochondrial membrane 34" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 43/111 (38%), Positives = 58/111 (52%)

Query:     4 WMDAESEPKTESEKADLDAIAALKE---SAA-IE----LKEKGNEYVKKGKKHYSDAIDC 55
             W    SE   E+ K+      A K    SA  +E    LKE+GNE VKKG  ++  AI+ 
Sbjct:   158 WSSLPSENHKETAKSKSKETTATKNRVPSAGDVERARVLKEEGNELVKKG--NHKKAIEK 215

Query:    56 YTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
             Y+    +++L  S  S  Y+NRA  +L+L  Y+ A  D  EALKL   NVK
Sbjct:   216 YS----ESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVK 262

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISO

GO:0031072 "heat shock protein binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-06
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.4 bits (126), Expect = 4e-10
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 33  ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92
            L   GN Y K G   Y +A++ Y +A+      D +N+  Y N A     LG Y  A  
Sbjct: 2   ALLNLGNLYYKLGD--YDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALE 55

Query: 93  DAEEALKLCPTNVKV 107
           D E+AL+L P N K 
Sbjct: 56  DYEKALELDPDNAKA 70

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.8 bits (117), Expect = 4e-09
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRR 89
           A  LK  GN   K G   Y +AI+ Y +A+      D +N+  Y N A   L LG +Y  
Sbjct: 3   AEALKNLGNALFKLGD--YDEAIEAYEKALEL----DPDNAEAYYNLALAYLKLGKDYEE 56

Query: 90  AFTDAEEALKLCP 102
           A  D E+AL+L P
Sbjct: 57  ALEDLEKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 10  EPKTESEKADLDAIAALKESA----AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL 65
           EP  E  + D  ++A L E      A +LKEKGN+      K ++ AI  Y++AI     
Sbjct: 102 EPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAY--RNKDFNKAIKLYSKAIECK-- 157

Query: 66  SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV 108
               + V Y+NRA  +  LG++ +   D   AL+L P   K +
Sbjct: 158 ---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL 197

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 8/78 (10%)

Query: 30  AAIELKEKGNE-YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
            A +L++K  E +V      ++ A+D YT+AI      D  N+ LYA+RA  N+ LGN+ 
Sbjct: 1   MAKDLEDKAKEAFVDD---DFALAVDLYTQAI----DLDPNNAELYADRAQANIKLGNFT 53

Query: 89  RAFTDAEEALKLCPTNVK 106
            A  DA +A++L P+  K
Sbjct: 54  EAVADANKAIELDPSLAK 71

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +A+   ++  A+EL              Y K GK  Y +A++ Y +A+  +     +N+ 
Sbjct: 18  EALEYYEK--ALELDPDNADAYYNLAAAYYKLGK--YEEALEDYEKALELD----PDNAK 69

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPT 103
            Y N       LG Y  A    E+AL+L P 
Sbjct: 70  AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG0553	304	consensus TPR repeat-containing protein [General f	99.74
PRK15359	144	type III secretion system chaperone protein SscB;	99.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.67
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.65
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.64
PRK15359	144	type III secretion system chaperone protein SscB;	99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.54
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.51
KOG4234	271	consensus TPR repeat-containing protein [General f	99.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.5
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.49
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.48
PRK11189	296	lipoprotein NlpI; Provisional	99.47
KOG0553	304	consensus TPR repeat-containing protein [General f	99.46
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.45
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.43
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.42
PRK11189	296	lipoprotein NlpI; Provisional	99.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.39
PRK12370	553	invasion protein regulator; Provisional	99.38
PF13371	73	TPR_9: Tetratricopeptide repeat	99.38
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.37
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.37
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.37
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.34
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.32
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.32
PRK12370	553	invasion protein regulator; Provisional	99.31
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.29
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.29
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.27
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.26
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.25
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.25
PLN02789	320	farnesyltranstransferase	99.24
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.21
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.2
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.2
KOG1126	638	consensus DNA-binding cell division cycle control	99.2
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.16
KOG1125	579	consensus TPR repeat-containing protein [General f	99.15
PLN02789	320	farnesyltranstransferase	99.15
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.15
KOG1126	638	consensus DNA-binding cell division cycle control	99.15
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.15
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.11
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.1
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.07
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.07
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.06
PRK15331	165	chaperone protein SicA; Provisional	99.06
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.04
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.04
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.03
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	99.02
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.99
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.99
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.98
PRK10803	263	tol-pal system protein YbgF; Provisional	98.98
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.96
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.94
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.93
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.92
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.9
PF13512	142	TPR_18: Tetratricopeptide repeat	98.9
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.88
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.86
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
PF13428	44	TPR_14: Tetratricopeptide repeat	98.82
KOG4555	175	consensus TPR repeat-containing protein [Function	98.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.82
KOG4234	271	consensus TPR repeat-containing protein [General f	98.81
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.77
KOG2076	895	consensus RNA polymerase III transcription factor	98.76
PRK11906	458	transcriptional regulator; Provisional	98.76
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.71
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.71
PRK10803	263	tol-pal system protein YbgF; Provisional	98.69
PRK15331	165	chaperone protein SicA; Provisional	98.68
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.67
PF12688	120	TPR_5: Tetratrico peptide repeat	98.65
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.62
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.62
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.6
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.58
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.57
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.57
KOG2076	895	consensus RNA polymerase III transcription factor	98.57
PRK11906	458	transcriptional regulator; Provisional	98.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.54
PRK14574	822	hmsH outer membrane protein; Provisional	98.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.52
PF13431	34	TPR_17: Tetratricopeptide repeat	98.5
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.49
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.45
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.44
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.44
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.43
KOG2003	840	consensus TPR repeat-containing protein [General f	98.43
PF13371	73	TPR_9: Tetratricopeptide repeat	98.43
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.43
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.42
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.42
KOG1129	478	consensus TPR repeat-containing protein [General f	98.42
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.41
KOG4555	175	consensus TPR repeat-containing protein [Function	98.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.39
PF13512	142	TPR_18: Tetratricopeptide repeat	98.36
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.34
PF13428	44	TPR_14: Tetratricopeptide repeat	98.33
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.31
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.31
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.3
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.29
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.27
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.26
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.26
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.26
PRK14574	822	hmsH outer membrane protein; Provisional	98.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.25
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.24
PF12688	120	TPR_5: Tetratrico peptide repeat	98.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.21
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
KOG1129	478	consensus TPR repeat-containing protein [General f	98.2
KOG2003	840	consensus TPR repeat-containing protein [General f	98.18
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.15
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.14
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.12
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.11
PRK10941	269	hypothetical protein; Provisional	98.09
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.05
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.05
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.99
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.99
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.97
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.97
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.97
KOG1310	758	consensus WD40 repeat protein [General function pr	97.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.96
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.93
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.87
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.86
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.85
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.79
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.77
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.76
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.76
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.75
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.71
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.7
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.7
PF13431	34	TPR_17: Tetratricopeptide repeat	97.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.67
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.62
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.6
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.58
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.48
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.44
KOG2471	696	consensus TPR repeat-containing protein [General f	97.41
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.38
KOG3364	149	consensus Membrane protein involved in organellar	97.32
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.29
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.29
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.27
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.24
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.23
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.22
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	97.21
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.19
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.18
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.18
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.18
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.17
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.15
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.11
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.08
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.08
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.07
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.04
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.02
COG2912	269	Uncharacterized conserved protein [Function unknow	96.97
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.92
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.89
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.87
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.83
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.78
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.76
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.71
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.71
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.69
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.67
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.61
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.57
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.55
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.45
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.4
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.24
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.17
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.11
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.05
KOG0529	421	consensus Protein geranylgeranyltransferase type I	96.05
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.99
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.98
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.84
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.67
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.65
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.61
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.58
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.48
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	95.48
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.45
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.44
KOG1586	288	consensus Protein required for fusion of vesicles	95.43
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	95.4
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.39
PLN03218	1060	maturation of RBCL 1; Provisional	95.39
KOG1310	758	consensus WD40 repeat protein [General function pr	95.31
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.23
PRK10941	269	hypothetical protein; Provisional	95.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.19
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.14
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	95.12
PLN03218	1060	maturation of RBCL 1; Provisional	95.07
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.01
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.98
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.94
PLN03077	857	Protein ECB2; Provisional	94.91
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.87
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	94.83
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.82
PRK04841	903	transcriptional regulator MalT; Provisional	94.8
PRK04841	903	transcriptional regulator MalT; Provisional	94.74
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.72
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.62
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.62
PLN03077	857	Protein ECB2; Provisional	94.26
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.25
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.23
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.06
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.03
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.0
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.99
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	93.83
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.79
KOG1586	288	consensus Protein required for fusion of vesicles	93.64
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.88
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.47
PF04212	69	MIT: MIT (microtubule interacting and transport) d	92.41
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.11
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	91.53
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.45
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.27
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.23
COG3947	361	Response regulator containing CheY-like receiver a	91.07
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.04
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	90.85
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.82
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	90.82
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.78
COG4976	287	Predicted methyltransferase (contains TPR repeat)	90.68
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	90.44
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.17
KOG3783	546	consensus Uncharacterized conserved protein [Funct	90.11
KOG2758	432	consensus Translation initiation factor 3, subunit	90.11
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.07
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.87
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.83
KOG1585	308	consensus Protein required for fusion of vesicles	89.83
COG2912	269	Uncharacterized conserved protein [Function unknow	89.71
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	89.6
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.52
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	89.29
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.25
KOG1915	677	consensus Cell cycle control protein (crooked neck	88.97
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.94
KOG2610	491	consensus Uncharacterized conserved protein [Funct	88.67
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.56
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	88.3
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	88.05
cd02656	75	MIT MIT: domain contained within Microtubule Inter	87.84
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	87.77
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.67
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	87.59
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	87.15
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.93
COG3898	531	Uncharacterized membrane-bound protein [Function u	86.25
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	86.02
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.87
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.7
PF04212	69	MIT: MIT (microtubule interacting and transport) d	85.65
PF12854	34	PPR_1: PPR repeat	85.64
COG3947	361	Response regulator containing CheY-like receiver a	85.4
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.1
KOG2471	696	consensus TPR repeat-containing protein [General f	84.83
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	84.58
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	83.85
KOG3364	149	consensus Membrane protein involved in organellar	83.84
KOG1941	518	consensus Acetylcholine receptor-associated protei	83.83
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	83.5
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	83.38
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	82.91
KOG1585	308	consensus Protein required for fusion of vesicles	82.63
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	82.38
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.31
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.12
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	82.04
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	82.01
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.79
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	81.31
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	81.23
PF13041	50	PPR_2: PPR repeat family	80.72
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	80.48
COG3898	531	Uncharacterized membrane-bound protein [Function u	80.16

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=1.2e-17  Score=116.65  Aligned_cols=86  Identities=35%  Similarity=0.446  Sum_probs=81.7

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +...++.++..||.+++.+  +|++|+..|++||++    +|.++.+|.|||.+|.++|.|+.|+++|+.+|.+||.+.+
T Consensus        77 ~~~~AE~LK~eGN~~m~~~--~Y~eAv~kY~~AI~l----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk  150 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNK--DYQEAVDKYTEAIEL----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK  150 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence            4457889999999999998  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcCC
Q 033440          107 VVILCSGSHPNQ  118 (119)
Q Consensus       107 a~~~~a~~~~~~  118 (119)
                      +|-++|.+|+.+
T Consensus       151 ay~RLG~A~~~~  162 (304)
T KOG0553|consen  151 AYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHcc
Confidence            999999998654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.67  E-value=1e-15  Score=98.43  Aligned_cols=96  Identities=11%  Similarity=0.086  Sum_probs=75.0

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++.+..++|.+...+..+|.++...|  ++++|+..|.+++.+    +|.++.+++++|.|+..+|++++|+..
T Consensus        41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~y~~Al~l----~p~~~~a~~~lg~~l~~~g~~~eAi~~  114 (144)
T PRK15359         41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--EYTTAINFYGHALML----DASHPEPVYQTGVCLKMMGEPGLAREA  114 (144)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            34566677777778888888888888888877  888888888888888    788888888888888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |+++++++|+++..+..+|.+.
T Consensus       115 ~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        115 FQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHhCCCChHHHHHHHHHH
Confidence            8888888888877777776543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=5.7e-16  Score=114.73  Aligned_cols=96  Identities=35%  Similarity=0.526  Sum_probs=88.2

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +..+..+....++|..+...+..|+.+|+.|  ||..|+..|+++|..    +|+++.+|.|||.||.++|++..|+.||
T Consensus       342 k~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g--dy~~Av~~YteAIkr----~P~Da~lYsNRAac~~kL~~~~~aL~Da  415 (539)
T KOG0548|consen  342 KALKEAERKAYINPEKAEEEREKGNEAFKKG--DYPEAVKHYTEAIKR----DPEDARLYSNRAACYLKLGEYPEALKDA  415 (539)
T ss_pred             HHHHHHHHHHhhChhHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3444555556678999999999999999999  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccCc
Q 033440           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++|++.++|++.|.++.
T Consensus       416 ~~~ieL~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  416 KKCIELDPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHhcCchHHHHHHHHHHHHH
Confidence            9999999999999999998864

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.65  E-value=2.6e-15  Score=84.76  Aligned_cols=67  Identities=36%  Similarity=0.565  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCC
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAFTDAEEALKLCP  102 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p  102 (119)
                      ++..|..+|..++..|  +|++|+..|+++|++    +|+++.+++++|.|+..+| ++.+|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQG--DYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4678999999999999  999999999999999    9999999999999999999 79999999999999998

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=5.5e-16  Score=114.24  Aligned_cols=83  Identities=33%  Similarity=0.559  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      -+.+..+..+||.+|+.|  .|++||.+|++||++    +|+.+..|.||+.||..+|+|++.+++|.++|+++|+++++
T Consensus       112 ~k~A~~lK~~GN~~f~~k--kY~eAIkyY~~AI~l----~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA  185 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNK--KYDEAIKYYTQAIEL----CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA  185 (606)
T ss_pred             HHHHHHHHhhhhhhhhcc--cHHHHHHHHHHHHhc----CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH
Confidence            457888999999999998  999999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHhhccCc
Q 033440          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      +++|+.++-
T Consensus       186 l~RRA~A~E  194 (606)
T KOG0547|consen  186 LLRRASAHE  194 (606)
T ss_pred             HHHHHHHHH
Confidence            999999874

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.62  E-value=1.2e-14  Score=93.48  Aligned_cols=91  Identities=15%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..+++++.++|+.   +..+|..+++.|  ++++|+..|.+++..    +|.++.++.++|.++..+|++++|+..|+++
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A   84 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEG--DYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4688888999986   667899999999  999999999999999    9999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHhhccCcC
Q 033440           98 LKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~~  117 (119)
                      +.++|+++.+++++|.++..
T Consensus        85 l~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHH
Confidence            99999999999999998753

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.54  E-value=1.1e-13  Score=89.54  Aligned_cols=92  Identities=7%  Similarity=-0.052  Sum_probs=77.9

Q ss_pred             HHHHHHhc-HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           20 LDAIAALK-ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        20 ~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      +..+..+. ++..+.++..|..+++.|  ++++|...|+-...+    +|.++..++++|.|+..+|+|++||..|.+++
T Consensus        23 l~~l~~~~~~~~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         23 LRMLLDDDVTQPLNTLYRYAMQLMEVK--EFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHCCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34455667 778888888888888888  888998888888888    88888888899999888899999999999988


Q ss_pred             hhCCCCHHHHHHhhccCcC
Q 033440           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+++.+++..|.|++.
T Consensus        97 ~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             hcCCCCchHHHHHHHHHHH
Confidence            8888888888888888753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.52  E-value=2e-13  Score=85.99  Aligned_cols=91  Identities=16%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .++.+...+|++......+|..++..|  ++++|+..+++++..    +|.++.++.++|.++..+|++.+|+..+++++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQG--RYDEALKLFQLLAAY----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666666666666666655  666666666666665    56666666666666666666666666666666


Q ss_pred             hhCCCCHHHHHHhhccC
Q 033440           99 KLCPTNVKVVILCSGSH  115 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~  115 (119)
                      +++|+++..++.+|.++
T Consensus        79 ~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        79 ALDPDDPRPYFHAAECL   95 (135)
T ss_pred             hcCCCChHHHHHHHHHH
Confidence            66666666666665554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.51  E-value=2e-13  Score=92.02  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=91.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH-HHhcC--HHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN-LLLGN--YRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~-~~l~~--~~~   89 (119)
                      .++.+..+......+|++++.|..+|..+...|  ++++|+..|++++.+    .|+++.++.++|.++ ...|+  +++
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g--~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRN--DYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            356677888889999999999999999999999  999999999999999    999999999999985 67787  599


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+..++++++++|+++.+++.+|.++++
T Consensus       129 A~~~l~~al~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370        129 TREMIDKALALDANEVTALMLLASDAFM  156 (198)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            9999999999999999999999987754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.50  E-value=1.7e-13  Score=91.85  Aligned_cols=87  Identities=31%  Similarity=0.420  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ...+..+...||.+|.+|  +|++|...|..||++||.. ......+|.|+|.|+++++.++.||.+|.++++++|.+.+
T Consensus        92 ~~kad~lK~EGN~~F~ng--dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k  169 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNG--DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK  169 (271)
T ss_pred             HHHHHHHHHHHHHhhhcc--cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence            345778899999999999  9999999999999996542 2245679999999999999999999999999999999999


Q ss_pred             HHHHhhccCc
Q 033440          107 VVILCSGSHP  116 (119)
Q Consensus       107 a~~~~a~~~~  116 (119)
                      ++.++|.+|-
T Consensus       170 Al~RRAeaye  179 (271)
T KOG4234|consen  170 ALERRAEAYE  179 (271)
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.50  E-value=3.6e-13  Score=98.00  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=90.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.++..+++++.++|+++..+..+|.+++..|  ++++|+..+++++.+    +|.++.+++++|.+++.+|+|++|+.
T Consensus        18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g--~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~lg~~~eA~~   91 (356)
T PLN03088         18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLG--NFTEAVADANKAIEL----DPSLAKAYLRKGTACMKLEEYQTAKA   91 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            346788899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhcc
Q 033440           93 DAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      .++++++++|++..++..++.|
T Consensus        92 ~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         92 ALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999998887766

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.49  E-value=4.1e-13  Score=74.87  Aligned_cols=65  Identities=26%  Similarity=0.405  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      +.+|..+++.|  +|++|+..|++++..    .|+++.+++.+|.|+..+|++++|+..++++++++|+++
T Consensus         1 ~~~a~~~~~~g--~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQG--DYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCT--HHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999  999999999999999    999999999999999999999999999999999999875

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.9e-13  Score=96.08  Aligned_cols=113  Identities=35%  Similarity=0.536  Sum_probs=90.7

Q ss_pred             cccCCCCCCCChh-hHHhHHHHHHh----c-HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 033440            3 LWMDAESEPKTES-EKADLDAIAAL----K-ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN   76 (119)
Q Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~~~~----~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   76 (119)
                      +||...+++-.+. .+..++.+...    . ...+.-+.+.||.||+..  +|..|+.+|+++|...+....-++.+|.|
T Consensus        47 fFMt~~p~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~K--ryk~A~~~Yt~Glk~kc~D~dlnavLY~N  124 (390)
T KOG0551|consen   47 FFMTRAPSEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEK--RYKDAVESYTEGLKKKCADPDLNAVLYTN  124 (390)
T ss_pred             HHHhcCCCCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhh--hHHHHHHHHHHHHhhcCCCccHHHHHHhh
Confidence            5676666554432 22333333222    1 347888999999999987  99999999999999855545568899999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           77 RAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ||.|.+.+|+|..|+.+|.+++.++|.+.+++++-|.|+++
T Consensus       125 RAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e  165 (390)
T KOG0551|consen  125 RAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE  165 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence            99999999999999999999999999999999999998753

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.47  E-value=1e-12  Score=93.37  Aligned_cols=97  Identities=22%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             hhhHHhHHHHHH---hcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           14 ESEKADLDAIAA---LKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        14 ~~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      +..+..+.+++.   ++| ..+..+..+|..+...|  ++++|+..|++++++    +|+++.+++++|.++..+|++++
T Consensus        43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--LRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHH
Confidence            344555555553   333 34677888888888877  888888888888888    88888888888888888888888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+..++++++++|++..+++++|.+++
T Consensus       117 A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189        117 AYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            888888888888888888888877654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=6e-13  Score=93.26  Aligned_cols=93  Identities=24%  Similarity=0.279  Sum_probs=86.5

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..+.+++.++|+++.-|.+++.+|.+.|  .|+.|+.....+|.+    +|..+.+|..+|.+|+-+|+|++|+..|
T Consensus        99 eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg--~~~~AVkDce~Al~i----Dp~yskay~RLG~A~~~~gk~~~A~~ay  172 (304)
T KOG0553|consen   99 EAVDKYTEAIELDPTNAVYYCNRAAAYSKLG--EYEDAVKDCESALSI----DPHYSKAYGRLGLAYLALGKYEEAIEAY  172 (304)
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHhc--chHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            4667788899999999999999999999999  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhc
Q 033440           95 EEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~  113 (119)
                      +++|+++|+|...+-.+..
T Consensus       173 kKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  173 KKALELDPDNESYKSNLKI  191 (304)
T ss_pred             HhhhccCCCcHHHHHHHHH
Confidence            9999999999876655543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=4.7e-13  Score=96.95  Aligned_cols=86  Identities=29%  Similarity=0.293  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc-----------chHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS-----------ENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+....+.||.+|+.|  +|..|...|.+++..+....+           ....++.|++.|++++++|.+|+..|+++|
T Consensus       207 ~A~~~ke~Gn~~fK~g--k~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEG--KFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHhhhHHHhhc--hHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4777889999999999  999999999999987543211           123589999999999999999999999999


Q ss_pred             hhCCCCHHHHHHhhccCcC
Q 033440           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+|++|+|++|+++..
T Consensus       285 e~~~~N~KALyRrG~A~l~  303 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLA  303 (397)
T ss_pred             hcCCCchhHHHHHHHHHHh
Confidence            9999999999999999854

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=2.8e-13  Score=98.37  Aligned_cols=88  Identities=36%  Similarity=0.562  Sum_probs=80.0

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .|+..+.+.+.||..|++|  +|..|.++|+.+|.+.|.+...++.+|.|||.+..++|+..+|+.+|+.++.+||...+
T Consensus       245 ~~k~le~~k~~gN~~fk~G--~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik  322 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNG--NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK  322 (486)
T ss_pred             hHHHHHHHHhhhhhHhhcc--chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence            3555667899999999999  99999999999999955555567789999999999999999999999999999999999


Q ss_pred             HHHHhhccCc
Q 033440          107 VVILCSGSHP  116 (119)
Q Consensus       107 a~~~~a~~~~  116 (119)
                      ++.++|.||+
T Consensus       323 all~ra~c~l  332 (486)
T KOG0550|consen  323 ALLRRANCHL  332 (486)
T ss_pred             HHHHHHHHHH
Confidence            9999999985

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.43  E-value=9.2e-13  Score=95.87  Aligned_cols=79  Identities=34%  Similarity=0.536  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      .+...|+.++..|  +|++|+..|+++|++    +|+++.+++++|.++..+|++++|+.++++++.++|+++.+|+++|
T Consensus         4 ~l~~~a~~a~~~~--~~~~Ai~~~~~Al~~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg   77 (356)
T PLN03088          4 DLEDKAKEAFVDD--DFALAVDLYTQAIDL----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG   77 (356)
T ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            4678899999999  999999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             ccCcC
Q 033440          113 GSHPN  117 (119)
Q Consensus       113 ~~~~~  117 (119)
                      .+++.
T Consensus        78 ~~~~~   82 (356)
T PLN03088         78 TACMK   82 (356)
T ss_pred             HHHHH
Confidence            88754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.42  E-value=1.8e-12  Score=99.89  Aligned_cols=95  Identities=19%  Similarity=0.286  Sum_probs=55.4

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++..++|.....+..+|.++...|  ++++|+..|+++++.    +|+++.+++++|.+++.+|++++|+.++
T Consensus       349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       349 EALADLSKSIELDPRVTQSYIKRASMNLELG--DPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444555555555555555555555555555  555555555555555    5555666666666666666666666666


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++|++..+++.+|.++
T Consensus       423 ~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHH
Confidence            666666666655555555544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.41  E-value=4.2e-12  Score=90.24  Aligned_cols=87  Identities=18%  Similarity=0.215  Sum_probs=82.6

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.++..++++.+++|+++.++..+|..+...|  ++++|+..|++++++    +|++..++.++|.++...|++++|+.+
T Consensus        81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~~  154 (296)
T PRK11189         81 ALARNDFSQALALRPDMADAYNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQDD  154 (296)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            45677888999999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHH
Q 033440           94 AEEALKLCPTNVK  106 (119)
Q Consensus        94 ~~~al~l~p~~~~  106 (119)
                      ++++++++|+++.
T Consensus       155 ~~~al~~~P~~~~  167 (296)
T PRK11189        155 LLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHhCCCCHH
Confidence            9999999999873

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.40  E-value=5.9e-12  Score=79.25  Aligned_cols=89  Identities=20%  Similarity=0.224  Sum_probs=82.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++.+...+|.+...+..+|..++..|  ++++|+..+++++..    +|.++..++++|.|+..+|++++|+..
T Consensus        34 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~  107 (135)
T TIGR02552        34 DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--EYEEAIDAYALAAAL----DPDDPRPYFHAAECLLALGEPESALKA  107 (135)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            45667788888899999999999999999998  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHH
Q 033440           94 AEEALKLCPTNVKVV  108 (119)
Q Consensus        94 ~~~al~l~p~~~~a~  108 (119)
                      ++++++++|++....
T Consensus       108 ~~~al~~~p~~~~~~  122 (135)
T TIGR02552       108 LDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHhccccchHH
Confidence            999999999887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.39  E-value=8.7e-12  Score=80.73  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+...+..+..++|.++.-|+.+|.++-..|  +|++|+..|.+++.+    +|++|..+++.|.|++.+|+.+.|...
T Consensus        52 ~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--~~~~AI~aY~~A~~L----~~ddp~~~~~ag~c~L~lG~~~~A~~a  125 (157)
T PRK15363         52 AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--HWGEAIYAYGRAAQI----KIDAPQAPWAAAECYLACDNVCYAIKA  125 (157)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence            45677888889999999999999999999988  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCC
Q 033440           94 AEEALKLCPT  103 (119)
Q Consensus        94 ~~~al~l~p~  103 (119)
                      ++.++...-.
T Consensus       126 F~~Ai~~~~~  135 (157)
T PRK15363        126 LKAVVRICGE  135 (157)
T ss_pred             HHHHHHHhcc
Confidence            9999998743

>PRK12370 invasion protein regulator; Provisional

Probab=99.38  E-value=3.5e-12  Score=97.42  Aligned_cols=95  Identities=16%  Similarity=0.036  Sum_probs=87.4

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++..++|+++.++..+|..+...|  ++++|+..|++++++    +|+++.+++++|.++..+|++++|+.
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHS--EYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            457778889999999999999999999999998  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhc
Q 033440           93 DAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~  113 (119)
                      .++++++++|.++.+++.++.
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~  414 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLW  414 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHH
Confidence            999999999998876655443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.38  E-value=6.1e-12  Score=71.49  Aligned_cols=70  Identities=29%  Similarity=0.507  Sum_probs=65.4

Q ss_pred             HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440           38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      ...+++.+  +|++|+..+++++.+    +|+++..+..+|.|+..+|++.+|+.+++++++.+|+++.+...+++
T Consensus         2 ~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQE--DYEEALEVLERALEL----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCC--CHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            46788888  999999999999999    99999999999999999999999999999999999999988877664

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.37  E-value=7.7e-13  Score=94.87  Aligned_cols=80  Identities=38%  Similarity=0.492  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ....+.++||.||++|  .|++||.+|.++|..    +|-++.++.||+.+|+++++|..|..+|..++.+|..+.++|.
T Consensus        96 ~~SEiKE~GN~yFKQg--Ky~EAIDCYs~~ia~----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen   96 KASEIKERGNTYFKQG--KYEEAIDCYSTAIAV----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             hhHHHHHhhhhhhhcc--chhHHHHHhhhhhcc----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            3445789999999999  999999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HhhccC
Q 033440          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      +++.+.
T Consensus       170 RR~~AR  175 (536)
T KOG4648|consen  170 RRMQAR  175 (536)
T ss_pred             HHHHHH
Confidence            998764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.37  E-value=2.9e-12  Score=97.41  Aligned_cols=94  Identities=28%  Similarity=0.254  Sum_probs=58.8

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..+..++.++|..++++.++|+.+-..|  +.+.|+.+|++||.+    .|..++++.|+|.+|...|+..+||..|
T Consensus       406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g--~v~~A~q~y~rAI~~----nPt~AeAhsNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  406 DAIMCYKEALRIKPTFADALSNMGNTYKEMG--DVSAAIQCYTRAIQI----NPTFAEAHSNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             HHHHHHHHHHhcCchHHHHHHhcchHHHHhh--hHHHHHHHHHHHHhc----CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence            4455555556666666666666666666655  666666666666666    6666666666666666666666666666


Q ss_pred             HHHHhhCCCCHHHHHHhhcc
Q 033440           95 EEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~  114 (119)
                      +.+|+++|+++.++-+++.+
T Consensus       480 ~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  480 RTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             HHHHccCCCCchhhhHHHHH
Confidence            66666666666666665544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.37  E-value=4.8e-12  Score=97.58  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=91.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++...+|+++..+..+|..++..|  ++++|+..|++++.+    +|++..++.++|.++.++|++++|+.
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~  454 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG--EFAQAGKDYQKSIDL----DPDFIFSHIQLGVTQYKEGSIASSMA  454 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            356778888888999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++..|+++.+++.+|.++..
T Consensus       455 ~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       455 TFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999887743

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.2e-12  Score=95.97  Aligned_cols=79  Identities=35%  Similarity=0.475  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ..+.+.||..|..|  ||+.|+..|+.+|.+    +|.+..+|.||+.||..+|+|.+|+++..+.++++|+++++|.++
T Consensus         3 ~e~k~kgnaa~s~~--d~~~ai~~~t~ai~l----~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~   76 (539)
T KOG0548|consen    3 VELKEKGNAAFSSG--DFETAIRLFTEAIML----SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRK   76 (539)
T ss_pred             hHHHHHHHhhcccc--cHHHHHHHHHHHHcc----CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHh
Confidence            45677899999988  999999999999999    888889999999999999999999999999999999999999998


Q ss_pred             hccCc
Q 033440          112 SGSHP  116 (119)
Q Consensus       112 a~~~~  116 (119)
                      |-++.
T Consensus        77 Gaa~~   81 (539)
T KOG0548|consen   77 GAALF   81 (539)
T ss_pred             HHHHH
Confidence            87663

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.32  E-value=1.2e-11  Score=94.12  Aligned_cols=95  Identities=16%  Similarity=0.138  Sum_probs=56.8

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+...+..+....|..+.++.++|.++-++|  ++++|+.+|.++|.+    +|.-+.++.|+|..|-.+|+...|+++|
T Consensus       372 ~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg--nl~~Ai~~YkealrI----~P~fAda~~NmGnt~ke~g~v~~A~q~y  445 (966)
T KOG4626|consen  372 EATRLYLKALEVFPEFAAAHNNLASIYKQQG--NLDDAIMCYKEALRI----KPTFADALSNMGNTYKEMGDVSAAIQCY  445 (966)
T ss_pred             HHHHHHHHHHhhChhhhhhhhhHHHHHHhcc--cHHHHHHHHHHHHhc----CchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence            3444555555555666666666666666655  566666666666666    6666666666666666666666666666


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .+++.++|...++|.++|.+|
T Consensus       446 ~rAI~~nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  446 TRAIQINPTFAEAHSNLASIY  466 (966)
T ss_pred             HHHHhcCcHHHHHHhhHHHHh
Confidence            666666666666666665554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.32  E-value=8.8e-12  Score=69.87  Aligned_cols=66  Identities=27%  Similarity=0.331  Sum_probs=60.6

Q ss_pred             HHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440           42 VKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        42 ~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      +..|  +|++|+..|++++..    +|++..+.+.+|.|+++.|++++|...+.+++..+|+++..+..++.
T Consensus         2 l~~~--~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQG--DYDEAIELLEKALQR----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTT--HHHHHHHHHHHHHHH----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhcc--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            5667  999999999999999    99999999999999999999999999999999999999888777664

...

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=1.7e-11  Score=93.64  Aligned_cols=101  Identities=11%  Similarity=0.030  Sum_probs=90.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC-------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG-------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      .++++..++++..++|+.+.++..+|.++...+       .+++++|+..+++++++    +|+++.++..+|.++...|
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcc
Confidence            356778899999999999999999998876432       01589999999999999    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+..++++++++|+++.+|+.+|.++..
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  384 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFM  384 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999987743

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.29  E-value=2.9e-11  Score=97.34  Aligned_cols=96  Identities=17%  Similarity=0.090  Sum_probs=75.8

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++..++|+ +..+..+|.++.+.|  ++++|+..|++++.+    +|+++.++.++|.++..+|++++|+..
T Consensus       593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG--~~deA~~~l~~AL~l----~Pd~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        593 ELALNDLTRSLNIAPS-ANAYVARATIYRQRH--NVPAAVSDLRAALEL----EPNNSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4556667777777775 777888888888877  888888888888888    888888888888888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|+++.+++.+|.++.
T Consensus       666 l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        666 LERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Confidence            88888888888888888877664

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=4.1e-12  Score=86.87  Aligned_cols=82  Identities=35%  Similarity=0.475  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+.+.|+.+|...  .|..|+..|.++|.+    +|..+.++.|++.||+++++|+.+..+|+++++++|+.++++|
T Consensus         9 ~a~qlkE~gnk~f~~k--~y~~ai~~y~raI~~----nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~   82 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPK--RYDDAIDCYSRAICI----NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY   82 (284)
T ss_pred             HHHHHHhccccccchh--hhchHHHHHHHHHhc----CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence            4677889999999976  999999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HhhccCcC
Q 033440          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      .+|.++++
T Consensus        83 flg~~~l~   90 (284)
T KOG4642|consen   83 FLGQWLLQ   90 (284)
T ss_pred             HHHHHHHh
Confidence            99987653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=9.5e-12  Score=92.20  Aligned_cols=97  Identities=22%  Similarity=0.315  Sum_probs=89.7

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+.++++.++.++|.....+..+|..|.+..  +.++-...|++|..+    +|+++.+|+.||+.++.+++|++|+.+|
T Consensus       344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~--~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADEN--QSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             hhhhhHHHHHhcCcccchHHHHHHHHHhhhh--ccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            4667899999999998888999999999988  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccCcC
Q 033440           95 EEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++.++|++.-+|..++.+.+.
T Consensus       418 ~Kai~L~pe~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  418 QKAISLDPENAYAYIQLCCALYR  440 (606)
T ss_pred             HHHhhcChhhhHHHHHHHHHHHH
Confidence            99999999999999988877654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.26  E-value=5.9e-11  Score=92.63  Aligned_cols=98  Identities=9%  Similarity=-0.118  Sum_probs=92.4

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++.+.++.|++..+....+.++.+.+  .+++|+..+++++..    +|+++..++.+|.++..+|++++|+.
T Consensus       102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~--~~eeA~~~~~~~l~~----~p~~~~~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179        102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ--GIEAGRAEIELYFSG----GSSSAREILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHhcchHHHHH
Confidence            456778899999999999999999999999998  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .|++++..+|++..++..+|.++.
T Consensus       176 ~y~~~~~~~p~~~~~~~~~a~~l~  199 (694)
T PRK15179        176 CFERLSRQHPEFENGYVGWAQSLT  199 (694)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHH
Confidence            999999999999999999998875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=3e-11  Score=82.21  Aligned_cols=98  Identities=18%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+.+.++++.+++|++.+.+.+-|..++.+|  .|++|...|++|+.. |. .+..+..+-|.|.|-++.|+++.|..++
T Consensus        87 ~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg--~~~eA~q~F~~Al~~-P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063          87 LADESYRKALSLAPNNGDVLNNYGAFLCAQG--RPEEAMQQFERALAD-PA-YGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             hHHHHHHHHHhcCCCccchhhhhhHHHHhCC--ChHHHHHHHHHHHhC-CC-CCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence            4455666777777777777777777777776  777777777777763 33 4567778889999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccCc
Q 033440           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++|+++|+++.+...++..++
T Consensus       163 ~raL~~dp~~~~~~l~~a~~~~  184 (250)
T COG3063         163 KRALELDPQFPPALLELARLHY  184 (250)
T ss_pred             HHHHHhCcCCChHHHHHHHHHH
Confidence            9999999998888877776654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.1e-10  Score=86.23  Aligned_cols=100  Identities=19%  Similarity=0.165  Sum_probs=61.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----------------------------
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----------------------------   65 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------------------------   65 (119)
                      ++++..+.+++++||+...+|.-.|..++...  +...|+..|++||+++|.                            
T Consensus       347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK--Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA  424 (559)
T KOG1155|consen  347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK--NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA  424 (559)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc--ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence            45555566666666666666666666666665  566666666666666221                            


Q ss_pred             --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                        -.|+++.++..+|.||.++++.++|+..|.+++.....+..+++++|.+|
T Consensus       425 ~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy  476 (559)
T KOG1155|consen  425 LELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY  476 (559)
T ss_pred             HhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence              05666666666666666666666666666666666666666666666554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.25  E-value=3.3e-11  Score=97.08  Aligned_cols=97  Identities=15%  Similarity=0.107  Sum_probs=90.8

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++..++|+++..+..+|..+...|  ++++|+..|++++++    .|+++.+++++|.++..+|++++|+.
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G--~~eeAi~~l~~AL~l----~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSG--DIAQSREMLERAHKG----LPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            456778899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++++++++|++....+..|.+.
T Consensus       699 ~l~~Al~l~P~~a~i~~~~g~~~  721 (987)
T PRK09782        699 YARLVIDDIDNQALITPLTPEQN  721 (987)
T ss_pred             HHHHHHhcCCCCchhhhhhhHHH
Confidence            99999999999988887777654

>PLN02789 farnesyltranstransferase

Probab=99.24  E-value=1.2e-10  Score=83.71  Aligned_cols=96  Identities=14%  Similarity=0.029  Sum_probs=70.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcH--HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHY--SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ++++..++++...+|++..+|..+|.++.+.|  +.  ++++..++++|+.    +|.+..++.+|+.++..+|+|++++
T Consensus        89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~--~~~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~~~eeL  162 (320)
T PLN02789         89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG--PDAANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGGWEDEL  162 (320)
T ss_pred             HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC--chhhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhhHHHHH
Confidence            35566666666667777777777776666665  42  5666777777777    7777788888888888888888888


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ..|.++|+.+|.|..+|+.++.++
T Consensus       163 ~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        163 EYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHCCCchhHHHHHHHHH
Confidence            888888888888888888877654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.9e-11  Score=82.17  Aligned_cols=85  Identities=27%  Similarity=0.300  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhc--------cCCCcc-------hHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN--------VLSDSE-------NSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--------~~~~~~-------~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ....+.+.||.+|+.|  +|.+|...|..||...        |+ +|.       ...++.|.++|++..|+|-+++++|
T Consensus       177 av~~l~q~GN~lfk~~--~ykEA~~~YreAi~~l~~L~lkEkP~-e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~  253 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLG--RYKEASSKYREAIICLRNLQLKEKPG-EPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC  253 (329)
T ss_pred             hhHHHHHhhhhhhhhc--cHHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence            4667889999999999  9999999999999541        22 222       3368899999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccCcC
Q 033440           95 EEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +.+|..+|+|++|||++|.++..
T Consensus       254 seiL~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  254 SEILRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHh
Confidence            99999999999999999998753

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=1.6e-10  Score=76.02  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ++..+..+..+|..+...|  ++++|+.+|.+++...+. .++.+.++.++|.++..+|++++|+..+.+++.++|++..
T Consensus        31 ~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADG--EYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            4567778999999999999  999999999999987222 2234678999999999999999999999999999999999


Q ss_pred             HHHHhhccCc
Q 033440          107 VVILCSGSHP  116 (119)
Q Consensus       107 a~~~~a~~~~  116 (119)
                      ++..+|.++.
T Consensus       108 ~~~~lg~~~~  117 (172)
T PRK02603        108 ALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHH
Confidence            9998888764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.21  E-value=1.4e-10  Score=67.78  Aligned_cols=77  Identities=23%  Similarity=0.334  Sum_probs=66.0

Q ss_pred             hhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           14 ESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      +.++..++++....|+  +...+..+|.++++.|  +|++|+..+++ +..    ++.++..++..|.|++++|+|++|+
T Consensus         6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--~y~~A~~~~~~-~~~----~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--KYEEAIELLQK-LKL----DPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--HHHHHHHHHHC-HTH----HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--CHHHHHHHHHH-hCC----CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            4677788888887773  6777888999999999  99999999999 878    8888888888999999999999999


Q ss_pred             HHHHHH
Q 033440           92 TDAEEA   97 (119)
Q Consensus        92 ~~~~~a   97 (119)
                      ..+.++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            998875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.21  E-value=1.6e-10  Score=66.50  Aligned_cols=72  Identities=21%  Similarity=0.349  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      |+.+..+..+|.+++..|  +|++|+..|++++.+....   .|..+.++.++|.|+..+|++++|+..+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELG--RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            678899999999999999  9999999999999873221   34457899999999999999999999999999863

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.2e-10  Score=85.89  Aligned_cols=87  Identities=11%  Similarity=0.122  Sum_probs=79.0

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +..++.=.++..--.||-|.-++  ++++|+.+|++|+.+    +|....++.-.|+=|+.+++-..|++.|++|++++|
T Consensus       322 v~~idKyR~ETCCiIaNYYSlr~--eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p  395 (559)
T KOG1155|consen  322 VSNIDKYRPETCCIIANYYSLRS--EHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP  395 (559)
T ss_pred             HHHhccCCccceeeehhHHHHHH--hHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence            44455555666677899998877  999999999999999    999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhhccC
Q 033440          103 TNVKVVILCSGSH  115 (119)
Q Consensus       103 ~~~~a~~~~a~~~  115 (119)
                      .+..|||.+|++|
T Consensus       396 ~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  396 RDYRAWYGLGQAY  408 (559)
T ss_pred             hhHHHHhhhhHHH
Confidence            9999999999987

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.20  E-value=7.4e-11  Score=87.18  Aligned_cols=70  Identities=19%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL---YANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      .+|+++..+.++|..++..|  +|++|+..|+++|++    +|+++.+   |+|+|.||..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lG--ryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKG--RVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            58999999999999999999  999999999999999    9998854   9999999999999999999999999983

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=2e-11  Score=92.60  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=81.0

Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           22 AIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        22 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      .+..-+|..+++|...||++..++  +++.|+++|.+||.+    +|...-+|--+|+=+.....|+.|...|++||..+
T Consensus       412 ~Li~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  412 DLIDTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHhhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            345668889999999999999987  999999999999999    89888888888888888999999999999999999


Q ss_pred             CCCHHHHHHhhccCcCC
Q 033440          102 PTNVKVVILCSGSHPNQ  118 (119)
Q Consensus       102 p~~~~a~~~~a~~~~~~  118 (119)
                      |++..|||.+|.+|++|
T Consensus       486 ~rhYnAwYGlG~vy~Kq  502 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQ  502 (638)
T ss_pred             chhhHHHHhhhhheecc
Confidence            99999999999988764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.18  E-value=2.8e-10  Score=76.77  Aligned_cols=87  Identities=13%  Similarity=0.117  Sum_probs=79.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHH-HHhChhc--HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEY-VKKGKKH--YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+.+...++++..++|+++..+..+|.++ +..|  +  +++|...+++++..    +|+++.+++++|.+++.+|+|++
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g--~~~~~~A~~~l~~al~~----dP~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAG--QHMTPQTREMIDKALAL----DANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHcCCHHH
Confidence            35677889999999999999999999985 6766  6  69999999999999    99999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCH
Q 033440           90 AFTDAEEALKLCPTNV  105 (119)
Q Consensus        90 A~~~~~~al~l~p~~~  105 (119)
                      |+..++++++++|.+.
T Consensus       163 Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        163 AIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHhhCCCCc
Confidence            9999999999998653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=2.6e-10  Score=65.35  Aligned_cols=75  Identities=36%  Similarity=0.516  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      +..+|..++..|  ++++|+..+.+++..    .|.++.++..+|.++...|++++|+..+.+++...|.+..+++.+|.
T Consensus         3 ~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   76 (100)
T cd00189           3 LLNLGNLYYKLG--DYDEALEYYEKALEL----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGL   76 (100)
T ss_pred             HHHHHHHHHHHh--cHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence            334444444444  455555555555544    44444444455555555555555555555555555444444444443


Q ss_pred             c
Q 033440          114 S  114 (119)
Q Consensus       114 ~  114 (119)
                      +
T Consensus        77 ~   77 (100)
T cd00189          77 A   77 (100)
T ss_pred             H
Confidence            3

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.16  E-value=3.2e-10  Score=88.34  Aligned_cols=94  Identities=10%  Similarity=0.061  Sum_probs=64.9

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...++++..++|+++..+..+|..+...|  ++++|+..+++++.+    +|+++.++.++|.++..+|++++|+..++
T Consensus       269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g--~~~eA~~~l~~al~l----~P~~~~a~~~La~~l~~~G~~~eA~~~l~  342 (656)
T PRK15174        269 AAEHWRHALQFNSDNVRIVTLYADALIRTG--QNEKAIPLLQQSLAT----HPDLPYVRAMYARALRQVGQYTAASDEFV  342 (656)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            456666666677777777777777777766  777777777777777    77777777777777777777777777777


Q ss_pred             HHHhhCCCCHHHHHHhhccC
Q 033440           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++..+|++...+..+|.++
T Consensus       343 ~al~~~P~~~~~~~~~a~al  362 (656)
T PRK15174        343 QLAREKGVTSKWNRYAAAAL  362 (656)
T ss_pred             HHHHhCccchHHHHHHHHHH
Confidence            77777776665555544443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.16  E-value=5.2e-10  Score=74.62  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=37.9

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...++++...+|.....+..+|..++..|  ++++|+..|.+++..    .|.+..++.++|.++...|++++|+..+
T Consensus        49 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~  122 (234)
T TIGR02521        49 VAKENLDKALEHDPDDYLAYLALALYYQQLG--ELEKAEDSFRRALTL----NPNNGDVLNNYGTFLCQQGKYEQAMQQF  122 (234)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3444455555555555555555555555555  555555555555555    4444444444444444444444444444


Q ss_pred             HHHH
Q 033440           95 EEAL   98 (119)
Q Consensus        95 ~~al   98 (119)
                      .+++
T Consensus       123 ~~~~  126 (234)
T TIGR02521       123 EQAI  126 (234)
T ss_pred             HHHH
Confidence            4433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.16  E-value=6.6e-10  Score=74.12  Aligned_cols=98  Identities=16%  Similarity=0.219  Sum_probs=62.9

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++.+.++++....|.....+..+|..++..|  ++++|+..+.+++... . .+.....+.++|.++...|++++|+..+
T Consensus        83 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (234)
T TIGR02521        83 KAEDSFRRALTLNPNNGDVLNNYGTFLCQQG--KYEQAMQQFEQAIEDP-L-YPQPARSLENAGLCALKAGDFDKAEKYL  158 (234)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhcc-c-cccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4455566666666666666667777777766  6777777777766540 0 2344556666677777777777777777


Q ss_pred             HHHHhhCCCCHHHHHHhhccCc
Q 033440           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+++..+|++..+++.+|.++.
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~  180 (234)
T TIGR02521       159 TRALQIDPQRPESLLELAELYY  180 (234)
T ss_pred             HHHHHhCcCChHHHHHHHHHHH
Confidence            7777777766666666666543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=6.8e-11  Score=88.77  Aligned_cols=88  Identities=19%  Similarity=0.176  Sum_probs=81.8

Q ss_pred             HhcH--HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           25 ALKE--SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        25 ~~~~--~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      ..+|  .+++....+|..|...|  +|+.|+.+|+.||..    .|++..++..+|..+..-.+.++||+.|++|++|.|
T Consensus       422 ~~~~~~~DpdvQ~~LGVLy~ls~--efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  422 RQLPTKIDPDVQSGLGVLYNLSG--EFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             HhCCCCCChhHHhhhHHHHhcch--HHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence            3455  57888999999999988  999999999999999    999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhhccCcCC
Q 033440          103 TNVKVVILCSGSHPNQ  118 (119)
Q Consensus       103 ~~~~a~~~~a~~~~~~  118 (119)
                      .++.++|++|.+++++
T Consensus       496 ~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  496 GYVRVRYNLGISCMNL  511 (579)
T ss_pred             Ceeeeehhhhhhhhhh
Confidence            9999999999988753

>PLN02789 farnesyltranstransferase

Probab=99.15  E-value=1.1e-09  Score=78.77  Aligned_cols=100  Identities=9%  Similarity=0.019  Sum_probs=91.7

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH--HH
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY--RR   89 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~   89 (119)
                      .++.++..++.++.++|++..+|..+|.++...|+ ++++++..+++++..    +|.+..++++|+.++.++|+.  ++
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~----npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-DLEEELDFAEDVAED----NPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHH----CCcchHHhHHHHHHHHHcCchhhHH
Confidence            46789999999999999999999999999999873 589999999999999    999999999999999999974  78


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++..+.++++++|.|..+|..++.++.
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~  153 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLR  153 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            899999999999999999999987653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.15  E-value=1.6e-09  Score=66.18  Aligned_cols=90  Identities=13%  Similarity=0.165  Sum_probs=76.1

Q ss_pred             hhhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCH
Q 033440           14 ESEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNY   87 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~   87 (119)
                      +++.+.+..+...+|+.   ..++..+|.+++..|  +++.|+..|.+++..    .|++   +.++.++|.++..+|++
T Consensus        19 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~   92 (119)
T TIGR02795        19 ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--KYADAAKAFLAVVKK----YPKSPKAPDALLKLGMSLQELGDK   92 (119)
T ss_pred             HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHH----CCCCCcccHHHHHHHHHHHHhCCh
Confidence            45677778877777654   568888999999988  999999999999998    5553   67889999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHH
Q 033440           88 RRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ++|+..++++++..|++..+.-
T Consensus        93 ~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        93 EKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHHHHHHHCcCChhHHH
Confidence            9999999999999998876554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=1.4e-10  Score=88.22  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=87.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .|+++..+..++..+|.+-.+|+.+|.+|.+++  +++.|.-.|.+|+++    +|.+..+....|..+.++|+.++|+.
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe--k~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~  544 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE--KLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQ  544 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccc--hhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHH
Confidence            456777788888889999999999999999988  899999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .+++|+.+||.++-..|.+|.+++.
T Consensus       545 ~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  545 LYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             HHHHHHhcCCCCchhHHHHHHHHHh
Confidence            9999999999999888888887754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.15  E-value=3.4e-10  Score=88.17  Aligned_cols=97  Identities=15%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHH----HHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSD----AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      +++...++++...+|+++..+..+|..+...|  ++++    |+..|++++.+    +|+++.++.++|.++...|++++
T Consensus       229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G--~~~eA~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~e  302 (656)
T PRK15174        229 QEAIQTGESALARGLDGAALRRSLGLAYYQSG--RSREAKLQAAEHWRHALQF----NSDNVRIVTLYADALIRTGQNEK  302 (656)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CchhhHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHHH
Confidence            45667778888889999999999999999999  8885    89999999999    99999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+..+++++.++|+++.+++.+|.++.
T Consensus       303 A~~~l~~al~l~P~~~~a~~~La~~l~  329 (656)
T PRK15174        303 AIPLLQQSLATHPDLPYVRAMYARALR  329 (656)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999988764

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.14  E-value=9.7e-10  Score=71.99  Aligned_cols=86  Identities=17%  Similarity=0.158  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ...+..+...|..+...|  ++++|+..|.+++.+.+. .+..+.++.++|.++..+|++++|+..+++++.++|.+..+
T Consensus        32 ~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~  108 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEG--EYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA  108 (168)
T ss_pred             hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            345788899999999999  999999999999988222 12245689999999999999999999999999999999999


Q ss_pred             HHHhhccCc
Q 033440          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      +..+|.++.
T Consensus       109 ~~~la~i~~  117 (168)
T CHL00033        109 LNNMAVICH  117 (168)
T ss_pred             HHHHHHHHH
Confidence            999887764

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.13  E-value=4.1e-10  Score=77.72  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=83.1

Q ss_pred             HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..+..+.-.+|++...+..+|...++.|  +|..|+..++++..+    .|+++.++..+|.+|.++|++++|...|.++
T Consensus        87 ~~~~~~~~~~~~d~~ll~~~gk~~~~~g--~~~~A~~~~rkA~~l----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA  160 (257)
T COG5010          87 AVLQKSAIAYPKDRELLAAQGKNQIRNG--NFGEAVSVLRKAARL----APTDWEAWNLLGAALDQLGRFDEARRAYRQA  160 (257)
T ss_pred             HHHhhhhccCcccHHHHHHHHHHHHHhc--chHHHHHHHHHHhcc----CCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence            3344444457888888888999999999  999999999999999    9999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHhhccCc
Q 033440           98 LKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~  116 (119)
                      +++.|+.+....++|..++
T Consensus       161 l~L~~~~p~~~nNlgms~~  179 (257)
T COG5010         161 LELAPNEPSIANNLGMSLL  179 (257)
T ss_pred             HHhccCCchhhhhHHHHHH
Confidence            9999999999999988663

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.11  E-value=8.6e-10  Score=67.37  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC---
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN---  104 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---  104 (119)
                      +..++.+|..++..|  ++++|+..|.+++..    .|++   +.+++.+|.++...|++++|+..+++++..+|++   
T Consensus         2 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         2 EEAYYDAALLVLKAG--DYADAIQAFQAFLKK----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             cHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence            356789999999998  999999999999998    6654   6789999999999999999999999999999885   


Q ss_pred             HHHHHHhhccCc
Q 033440          105 VKVVILCSGSHP  116 (119)
Q Consensus       105 ~~a~~~~a~~~~  116 (119)
                      +.+++.+|.++.
T Consensus        76 ~~~~~~~~~~~~   87 (119)
T TIGR02795        76 PDALLKLGMSLQ   87 (119)
T ss_pred             cHHHHHHHHHHH
Confidence            678888887764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.11  E-value=1.6e-09  Score=61.96  Aligned_cols=85  Identities=26%  Similarity=0.380  Sum_probs=77.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+..+....|.....+..+|.++...+  ++++|+..+++++..    .|.+..++..+|.++...|++++|..
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~   89 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLG--KYEEALEDYEKALEL----DPDNAKAYYNLGLAYYKLGKYEEALE   89 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC----CCcchhHHHHHHHHHHHHHhHHHHHH
Confidence            345677788888888888899999999999988  999999999999999    88888999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 033440           93 DAEEALKLCPT  103 (119)
Q Consensus        93 ~~~~al~l~p~  103 (119)
                      .+.++++.+|.
T Consensus        90 ~~~~~~~~~~~  100 (100)
T cd00189          90 AYEKALELDPN  100 (100)
T ss_pred             HHHHHHccCCC
Confidence            99999998874

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.10  E-value=4.4e-10  Score=80.83  Aligned_cols=88  Identities=26%  Similarity=0.308  Sum_probs=83.0

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .-+|.++....++|+.++.+|  ++..|+..|..||+.    +|++..+++.||.+|+.+|+-.-|+.++.++|++.|++
T Consensus        32 ~~~~advekhlElGk~lla~~--Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF  105 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARG--QLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF  105 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence            347889999999999999998  999999999999999    99999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCcCC
Q 033440          105 VKVVILCSGSHPNQ  118 (119)
Q Consensus       105 ~~a~~~~a~~~~~~  118 (119)
                      .-+...+|.++++|
T Consensus       106 ~~ARiQRg~vllK~  119 (504)
T KOG0624|consen  106 MAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHhchhhhhc
Confidence            99999999988764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.07  E-value=6.6e-10  Score=78.08  Aligned_cols=86  Identities=22%  Similarity=0.268  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------------------------CCcchHHHHHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------------------------SDSENSVLYANRA   78 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~~~~~a   78 (119)
                      .++..|...|..+.+.|  ++++|++.|++++++.|.                              ..|.++.++..+|
T Consensus       144 ~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la  221 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLG--DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA  221 (280)
T ss_dssp             T-HHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred             CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            44555555666666655  566666666666655321                              0455666778889


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++..+|++++|+..++++++.+|+++..+...|.++.
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~  259 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE  259 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred             HHhccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999888764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.07  E-value=1.3e-09  Score=74.31  Aligned_cols=79  Identities=24%  Similarity=0.234  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +.+..++|..|++.|  |+..|...+++||++    +|++..+|..++.+|.++|..+.|-+.|++++.++|++..++.+
T Consensus        35 a~arlqLal~YL~~g--d~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN  108 (250)
T COG3063          35 AKARLQLALGYLQQG--DYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN  108 (250)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence            455566777777766  777777777777777    77777777777777777777777777777777777777766666


Q ss_pred             hhccC
Q 033440          111 CSGSH  115 (119)
Q Consensus       111 ~a~~~  115 (119)
                      -|--+
T Consensus       109 YG~FL  113 (250)
T COG3063         109 YGAFL  113 (250)
T ss_pred             hhHHH
Confidence            55433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.06  E-value=8.3e-10  Score=75.52  Aligned_cols=85  Identities=24%  Similarity=0.272  Sum_probs=75.5

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      ++..+..++.+|..++..|  +|++|+..+++++..    .|.++   .+++.+|.++..+|++++|+..++++++..|+
T Consensus        29 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSG--DYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            4456788999999999999  999999999999999    77654   67899999999999999999999999999998


Q ss_pred             CHH---HHHHhhccCcC
Q 033440          104 NVK---VVILCSGSHPN  117 (119)
Q Consensus       104 ~~~---a~~~~a~~~~~  117 (119)
                      ++.   +++.+|.+++.
T Consensus       103 ~~~~~~a~~~~g~~~~~  119 (235)
T TIGR03302       103 HPDADYAYYLRGLSNYN  119 (235)
T ss_pred             CCchHHHHHHHHHHHHH
Confidence            776   78888888754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15331 chaperone protein SicA; Provisional

Probab=99.06  E-value=1e-09  Score=71.48  Aligned_cols=90  Identities=14%  Similarity=0.109  Sum_probs=81.3

Q ss_pred             HHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           22 AIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        22 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      .+..+.++..+..+..|-.+++.|  ++++|...|+-....    +|.++..+..+|.|+..+++|++|+..|..+..++
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQG--RLDEAETFFRFLCIY----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344567888899999999999998  999999999999999    99999999999999999999999999999999999


Q ss_pred             CCCHHHHHHhhccCcC
Q 033440          102 PTNVKVVILCSGSHPN  117 (119)
Q Consensus       102 p~~~~a~~~~a~~~~~  117 (119)
                      ++++...|..|.|++.
T Consensus       102 ~~dp~p~f~agqC~l~  117 (165)
T PRK15331        102 KNDYRPVFFTGQCQLL  117 (165)
T ss_pred             cCCCCccchHHHHHHH
Confidence            9999999999988854

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.5e-09  Score=75.31  Aligned_cols=98  Identities=21%  Similarity=0.193  Sum_probs=85.8

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc---CHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRA   90 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A   90 (119)
                      +.-+..++..+..||++++.|..+|.+|+..|  ++..|+..|.+|+.+    .|+++.++...|.+++...   .-.++
T Consensus       139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~--~~~~A~~AY~~A~rL----~g~n~~~~~g~aeaL~~~a~~~~ta~a  212 (287)
T COG4235         139 EALIARLETHLQQNPGDAEGWDLLGRAYMALG--RASDALLAYRNALRL----AGDNPEILLGLAEALYYQAGQQMTAKA  212 (287)
T ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence            34455567777889999999999999999999  999999999999999    9999999999999887653   37788


Q ss_pred             HHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           91 FTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ...+++++++||+++.+.+.+|..+++
T Consensus       213 ~~ll~~al~~D~~~iral~lLA~~afe  239 (287)
T COG4235         213 RALLRQALALDPANIRALSLLAFAAFE  239 (287)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            899999999999999999999887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.04  E-value=1.6e-09  Score=88.82  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=67.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH--------------HHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV--------------LYANRA   78 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~a   78 (119)
                      .++++..+++++.++|+++..+..+|..+++.|  ++++|+..|+++++.    +|++..              .....|
T Consensus       285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~l~~Al~~----~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQG--DRARAVAQFEKALAL----DPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCccchhHHHHHHHhhhHHHHHHHH
Confidence            346677788888888988899999999999988  899999999999888    443321              122345


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++...|++++|+..++++++++|++..+++.+|.++
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~  395 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA  395 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5555566666666666666666666666666555554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.03  E-value=8e-11  Score=86.98  Aligned_cols=81  Identities=32%  Similarity=0.446  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+...++.++...  +|+.|+..|.+||++    +|+.+.++.+|+.++++.++|..|+.|+.++++++|...++|++
T Consensus         4 a~e~k~ean~~l~~~--~fd~avdlysKaI~l----dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r   77 (476)
T KOG0376|consen    4 AEELKNEANEALKDK--VFDVAVDLYSKAIEL----DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR   77 (476)
T ss_pred             hhhhhhHHhhhcccc--hHHHHHHHHHHHHhc----CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence            556678899999988  999999999999999    99999999999999999999999999999999999999999999


Q ss_pred             hhccCcC
Q 033440          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.+++.
T Consensus        78 rg~a~m~   84 (476)
T KOG0376|consen   78 RGTAVMA   84 (476)
T ss_pred             ccHHHHh
Confidence            9887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.03  E-value=2.4e-09  Score=87.87  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=82.7

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH--------------
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA--------------   78 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a--------------   78 (119)
                      .+++...++++..++|+++.++..+|.++...|  ++++|+..|++++.+    +|.+..++..++              
T Consensus       367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g--~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARK--DYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence            345677788888999999999999999999988  999999999999999    777766554444              


Q ss_pred             ----------------------------HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           79 ----------------------------HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        79 ----------------------------~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                                                  .++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                        344567899999999999999999999999999887753

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=7.8e-10  Score=83.18  Aligned_cols=85  Identities=19%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -+++++.++.++..+|.+...|..+|..+-...  +.++||..|++|+.+    .|...-+.+|+|.+++.+|-|++|+.
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--RSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--ccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            457889999999999999999999999998876  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 033440           93 DAEEALKLCPT  103 (119)
Q Consensus        93 ~~~~al~l~p~  103 (119)
                      ++-.||.+.+.
T Consensus       520 hlL~AL~mq~k  530 (579)
T KOG1125|consen  520 HLLEALSMQRK  530 (579)
T ss_pred             HHHHHHHhhhc
Confidence            99999998754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.99  E-value=3.6e-09  Score=82.57  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|+....+..+|..++..|  ++++|+..+++++..    +|.+..++..+|.++...|++++|+..
T Consensus       142 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~  215 (899)
T TIGR02917       142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN--RFDEARALIDEVLTA----DPGNVDALLLKGDLLLSLGNIELALAA  215 (899)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            34555566666666666677777777777766  777777777777776    666777777777777777777777777


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|+++.+++.++.++
T Consensus       216 ~~~a~~~~p~~~~~~~~~~~~~  237 (899)
T TIGR02917       216 YRKAIALRPNNPAVLLALATIL  237 (899)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHH
Confidence            7777777777777666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.99  E-value=4.6e-10  Score=65.60  Aligned_cols=65  Identities=28%  Similarity=0.396  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           48 HYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+.|+..++++++.    .|.  +...++.+|.|++++|+|++|+..+++ ++.+|.++..++.+|+|++.
T Consensus         4 ~y~~Ai~~~~k~~~~----~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    4 NYENAIKYYEKLLEL----DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             -HHHHHHHHHHHHHH----HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH----CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999    663  677888899999999999999999999 88999999999999998754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=9.5e-09  Score=74.86  Aligned_cols=78  Identities=26%  Similarity=0.270  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      ...+.+++.++.+.+  +|.+|+...+++|++    +|+|..++|.+|.++..+|+|+.|+.+++++++++|+|-.+...
T Consensus       257 ~~~~lNlA~c~lKl~--~~~~Ai~~c~kvLe~----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e  330 (397)
T KOG0543|consen  257 LACHLNLAACYLKLK--EYKEAIESCNKVLEL----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE  330 (397)
T ss_pred             HHHhhHHHHHHHhhh--hHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            556788999999998  999999999999999    99999999999999999999999999999999999999877766


Q ss_pred             hhcc
Q 033440          111 CSGS  114 (119)
Q Consensus       111 ~a~~  114 (119)
                      +..+
T Consensus       331 l~~l  334 (397)
T KOG0543|consen  331 LIKL  334 (397)
T ss_pred             HHHH
Confidence            5543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.99  E-value=4.8e-09  Score=81.90  Aligned_cols=95  Identities=18%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++...++.+....|.+...+..+|..+...|  ++++|+..|+++++.    .|.++..+..+|.++...|++++|+..+
T Consensus       585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~  658 (899)
T TIGR02917       585 KALAILNEAADAAPDSPEAWLMLGRAQLAAG--DLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSL  658 (899)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4445555555666666777777777777777  777777777777777    7777777777777777777777777777


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++.+|++..+++.++.++
T Consensus       659 ~~~~~~~~~~~~~~~~l~~~~  679 (899)
T TIGR02917       659 KRALELKPDNTEAQIGLAQLL  679 (899)
T ss_pred             HHHHhcCCCCHHHHHHHHHHH
Confidence            777777777777776666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.98  E-value=5.1e-09  Score=82.88  Aligned_cols=95  Identities=11%  Similarity=0.029  Sum_probs=77.5

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|.++..+..+|..+...|  ++++|+..+.+++..    .|+++. +..+|.++...|++++|+..
T Consensus        66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~  138 (765)
T PRK10049         66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAG--QYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRA  138 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence            35667777777788888888888888888877  888888888888888    888888 88888888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|++..+++.++.++
T Consensus       139 l~~al~~~P~~~~~~~~la~~l  160 (765)
T PRK10049        139 MTQALPRAPQTQQYPTEYVQAL  160 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Confidence            8888888888888887777655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.98  E-value=1.3e-08  Score=71.47  Aligned_cols=91  Identities=10%  Similarity=0.012  Sum_probs=63.2

Q ss_pred             hhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      +++..++...+..|+.   +.+++-+|..++..|  +|++|+..|.+++..-|. +|..+.+++.+|.++..+|++++|+
T Consensus       161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--~~~~A~~~f~~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~  237 (263)
T PRK10803        161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--KKDDAAYYFASVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAK  237 (263)
T ss_pred             HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHH
Confidence            4445555556666665   467777777777777  778888777777776333 3446677777777777777888888


Q ss_pred             HHHHHHHhhCCCCHHHH
Q 033440           92 TDAEEALKLCPTNVKVV  108 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~  108 (119)
                      ..++++++..|++..+-
T Consensus       238 ~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        238 AVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHCcCCHHHH
Confidence            88887777777765443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.96  E-value=7.5e-09  Score=70.79  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=76.3

Q ss_pred             hhhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH---HHHHHHHHHHHh---
Q 033440           14 ESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV---LYANRAHVNLLL---   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~a~~~~~l---   84 (119)
                      +.++..++.+...+|+.+   .++..+|..++..|  ++++|+..|+++++.    .|+++.   +++.+|.++...   
T Consensus        50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~g~~~~~~~~~  123 (235)
T TIGR03302        50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--DYAEAIAAADRFIRL----HPNHPDADYAYYLRGLSNYNQIDR  123 (235)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCCchHHHHHHHHHHHHHhccc
Confidence            456677888888877644   67899999999999  999999999999999    776665   789999999987   


Q ss_pred             -----cCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           85 -----GNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        85 -----~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                           |++++|+..++++++.+|++..++
T Consensus       124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       124 VDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence                 899999999999999999986553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.96  E-value=1.9e-08  Score=66.16  Aligned_cols=86  Identities=20%  Similarity=0.309  Sum_probs=75.0

Q ss_pred             hhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC----
Q 033440           14 ESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN----   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~----   86 (119)
                      ++++..+.++..+.++   .+..+..+|..+...|  ++++|+..|.+++..    .|.++..+.++|.++..+|+    
T Consensus        52 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~a  125 (172)
T PRK02603         52 AEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--EHDKALEYYHQALEL----NPKQPSALNNIAVIYHKRGEKAEE  125 (172)
T ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChHhH
Confidence            4566777777766554   3578999999999999  999999999999999    99999999999999999888    


Q ss_pred             ----------HHHHHHHHHHHHhhCCCCH
Q 033440           87 ----------YRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        87 ----------~~~A~~~~~~al~l~p~~~  105 (119)
                                +.+|+..+++++.++|++.
T Consensus       126 ~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        126 AGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence                      7889999999999999864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.94  E-value=9.3e-09  Score=80.53  Aligned_cols=91  Identities=5%  Similarity=-0.074  Sum_probs=84.0

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +.......|.+++++..+|.+..+.|  .+++|...+..++++    .|++..++.+++.++.+++++++|+..+++++.
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~~g--~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEAAH--RSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            33334456888999999999999999  999999999999999    999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHhhccCc
Q 033440          100 LCPTNVKVVILCSGSHP  116 (119)
Q Consensus       100 l~p~~~~a~~~~a~~~~  116 (119)
                      .+|++..+++.+|.++.
T Consensus       149 ~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179        149 GGSSSAREILLEAKSWD  165 (694)
T ss_pred             cCCCCHHHHHHHHHHHH
Confidence            99999999999998764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.93  E-value=1.3e-09  Score=61.08  Aligned_cols=49  Identities=22%  Similarity=0.267  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           69 ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++..+.++|.+++..|+|++|+..|+++++++|+++.+|+++|.++..
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~   49 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK   49 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999998854

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.92  E-value=1.4e-08  Score=73.31  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-----------------------------
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-----------------------------   65 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----------------------------   65 (119)
                      .++.++++++.+.|+..-+-.++|++++++|  .+++|...|++.|...|.                             
T Consensus        90 ~al~Dl~rVlelKpDF~~ARiQRg~vllK~G--ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~  167 (504)
T KOG0624|consen   90 AALQDLSRVLELKPDFMAARIQRGVVLLKQG--ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG  167 (504)
T ss_pred             cchhhHHHHHhcCccHHHHHHHhchhhhhcc--cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            3566777777777777777777777777777  777777777776655331                             


Q ss_pred             ----------------CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           66 ----------------SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        66 ----------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                                      ..|+++.++..|+.||..-|.+..||++.+.+-++..++..++|..+..++.
T Consensus       168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT  235 (504)
T ss_pred             CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence                            3788999999999999999999999999999999999999999999887653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=1e-08  Score=76.11  Aligned_cols=99  Identities=17%  Similarity=0.123  Sum_probs=91.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+.+.++.+.+..|+++-.+--.|.+++..+  +..+|++.+.+++.+    +|..+.+..++|.++++.|++.+|+.
T Consensus       322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--k~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~eai~  395 (484)
T COG4783         322 YDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--KAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQEAIR  395 (484)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChHHHHH
Confidence            345667788888899999999999999999998  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++..+.-+|+++..|..+|++|..
T Consensus       396 ~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         396 ILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHHHHhhcCCCCchHHHHHHHHHHH
Confidence            9999999999999999999998743

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.91  E-value=1.5e-08  Score=73.69  Aligned_cols=102  Identities=10%  Similarity=-0.018  Sum_probs=81.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+.++...+|+....+..+|..++..|  ++++|+..+++++...+........++..+|.++...|++++|+.
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  128 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRG--EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE  128 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            456778888888889999999999999999988  999999999988875111011234577888999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+.++++.+|.+..++..++.++.
T Consensus       129 ~~~~~l~~~~~~~~~~~~la~~~~  152 (389)
T PRK11788        129 LFLQLVDEGDFAEGALQQLLEIYQ  152 (389)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHH
Confidence            999999988888888888777654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.90  E-value=2e-08  Score=73.05  Aligned_cols=94  Identities=19%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-----HHHHHHHHHHHHHhcCHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-----SVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~a~~~~~l~~~~~A   90 (119)
                      +...++.+...+|.....+..++..+...|  ++++|+..+.+++..    .|.+     ...+.++|.++...|++++|
T Consensus       126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        126 AEELFLQLVDEGDFAEGALQQLLEIYQQEK--DWQKAIDVAERLEKL----GGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            344444544545555666666666666666  666666666666655    3322     22445566666666666666


Q ss_pred             HHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           91 FTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +..++++++.+|++..+++.+|.++
T Consensus       200 ~~~~~~al~~~p~~~~~~~~la~~~  224 (389)
T PRK11788        200 RALLKKALAADPQCVRASILLGDLA  224 (389)
T ss_pred             HHHHHHHHhHCcCCHHHHHHHHHHH
Confidence            6666666666666666666665554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.90  E-value=1.3e-08  Score=80.53  Aligned_cols=96  Identities=9%  Similarity=0.099  Sum_probs=87.1

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++.+..+..+...+|..+..+..+|..+.+.|  ++++|+..|++++..    +|.++.++..++.++...|++++|+..
T Consensus        32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLK--QWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34556677776677888888999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++.+|++.. ++.+|.++.
T Consensus       106 l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049        106 AKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHhCCCCHH-HHHHHHHHH
Confidence            9999999999999 999988764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.90  E-value=1.6e-08  Score=64.56  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---HH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---KV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a  107 (119)
                      +..++..|...++.|  +|.+|++.++.....-|. .|-...+...++.+|++.++|++|+..+++-++++|.++   .+
T Consensus        10 ~~~ly~~a~~~l~~~--~Y~~A~~~le~L~~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen   10 PQELYQEAQEALQKG--NYEEAIKQLEALDTRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            567889999999998  999999999998887333 345567889999999999999999999999999999875   58


Q ss_pred             HHHhhccCcCC
Q 033440          108 VILCSGSHPNQ  118 (119)
Q Consensus       108 ~~~~a~~~~~~  118 (119)
                      +|.+|.+++.+
T Consensus        87 ~Y~~gL~~~~~   97 (142)
T PF13512_consen   87 YYMRGLSYYEQ   97 (142)
T ss_pred             HHHHHHHHHHH
Confidence            89999887654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=3.3e-08  Score=68.45  Aligned_cols=93  Identities=20%  Similarity=0.205  Sum_probs=81.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc---CHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRAF   91 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~   91 (119)
                      ..++.+-......+.+.++|.+++..|+..|  +|++|.-+|++.+-+    .|.++.++..+|.+++-+|   ++.-|.
T Consensus       138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~--~f~kA~fClEE~ll~----~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEG--DFEKAAFCLEELLLI----QPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4566666677788999999999999999999  999999999999999    9999999999999988765   688899


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhc
Q 033440           92 TDAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      .+|.++++++|.+..+++.+-.
T Consensus       212 kyy~~alkl~~~~~ral~GI~l  233 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALFGIYL  233 (289)
T ss_pred             HHHHHHHHhChHhHHHHHHHHH
Confidence            9999999999988888887644

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.88  E-value=5.7e-08  Score=63.57  Aligned_cols=87  Identities=17%  Similarity=0.144  Sum_probs=70.7

Q ss_pred             ChhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH-------
Q 033440           13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL-------   82 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~-------   82 (119)
                      .+++...+..+..+.++   .+.++..+|.++...|  ++++|+..|.+++.+    .|.....+.++|.++.       
T Consensus        51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--~~~eA~~~~~~Al~~----~~~~~~~~~~la~i~~~~~~~~~  124 (168)
T CHL00033         51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--EHTKALEYYFQALER----NPFLPQALNNMAVICHYRGEQAI  124 (168)
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHhhHHHH
Confidence            34566777777766544   4568999999999999  999999999999999    8999999999999998       


Q ss_pred             HhcCHH-------HHHHHHHHHHhhCCCCH
Q 033440           83 LLGNYR-------RAFTDAEEALKLCPTNV  105 (119)
Q Consensus        83 ~l~~~~-------~A~~~~~~al~l~p~~~  105 (119)
                      .+|+++       +|+..+++++..+|++.
T Consensus       125 ~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        125 EQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            777776       56666667888888653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.88  E-value=2.3e-08  Score=67.64  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---H
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---K  106 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~  106 (119)
                      .+..++..|..++..|  +|.+|+..|++.+..-|. .|.-+.+.+.+|.++++.|+|.+|+..+++.++..|+++   .
T Consensus         4 ~~~~lY~~a~~~~~~g--~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    4 TAEALYQKALEALQQG--DYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             -HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence            5778999999999999  999999999999998555 566778999999999999999999999999999999764   6


Q ss_pred             HHHHhhccCcC
Q 033440          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      ++|.+|.+++.
T Consensus        81 A~Y~~g~~~~~   91 (203)
T PF13525_consen   81 ALYMLGLSYYK   91 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            89999987654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.86  E-value=4.4e-08  Score=68.05  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC--
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL---YANRAHVNLLLGNYRRAFTDAEEALKLCPTN--  104 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--  104 (119)
                      .+..++..|..++..|  +|++|+..|++.+..    .|..+.+   .+.+|.+++++++|.+|+..+++.+++.|++  
T Consensus        31 ~~~~~Y~~A~~~~~~g--~y~~Ai~~f~~l~~~----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDG--NWKQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            4667889999999988  999999999999999    6665544   4899999999999999999999999999876  


Q ss_pred             -HHHHHHhhccC
Q 033440          105 -VKVVILCSGSH  115 (119)
Q Consensus       105 -~~a~~~~a~~~  115 (119)
                       +.++|.+|.++
T Consensus       105 ~~~a~Y~~g~~~  116 (243)
T PRK10866        105 IDYVLYMRGLTN  116 (243)
T ss_pred             hHHHHHHHHHhh
Confidence             56889999875

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=7.7e-09  Score=77.94  Aligned_cols=95  Identities=18%  Similarity=0.127  Sum_probs=53.6

Q ss_pred             hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc---chHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS---ENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      -+..+..+.|.++-.+.++|.+.|..+  .|.+|+.+|..+++.++.+.+   .....+.|+|+++.+++.+++||..++
T Consensus       402 Ff~~A~ai~P~Dplv~~Elgvvay~~~--~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  402 FFKQALAIAPSDPLVLHELGVVAYTYE--EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             HHHHHHhcCCCcchhhhhhhheeehHh--hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            344555566666666666666666655  666666666666643332221   123345566666666666666666666


Q ss_pred             HHHhhCCCCHHHHHHhhccC
Q 033440           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++|.+.|.++.+|-.+|.+|
T Consensus       480 ~aL~l~~k~~~~~asig~iy  499 (611)
T KOG1173|consen  480 KALLLSPKDASTHASIGYIY  499 (611)
T ss_pred             HHHHcCCCchhHHHHHHHHH
Confidence            66666666666665555544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.85  E-value=3e-08  Score=76.92  Aligned_cols=99  Identities=19%  Similarity=0.159  Sum_probs=89.7

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++++...+..+..++|..+..++..|..+..+|  .+.+|...|.-|+.+    +|+.+.....+|.|+.+.|+..-|..
T Consensus       666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~--~~~EA~~af~~Al~l----dP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKG--QLEEAKEAFLVALAL----DPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH--hhHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            345556777888899999999999999999988  999999999999999    99999999999999999998777777


Q ss_pred             --HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 --DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 --~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                        ..+.++++||.+.++||.+|.++..
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKK  766 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence              9999999999999999999988743

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=3.5e-08  Score=68.31  Aligned_cols=95  Identities=17%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .++..+.++..++|++++.|..+|.+|-+.|  +++.|-..|.+++++    .|+++.+..|+|..++-.|+++.|...+
T Consensus       118 ~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G--r~~~Ar~ay~qAl~L----~~~~p~~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         118 EAVSVLRKAARLAPTDWEAWNLLGAALDQLG--RFDEARRAYRQALEL----APNEPSIANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             HHHHHHHHHhccCCCChhhhhHHHHHHHHcc--ChhHHHHHHHHHHHh----ccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence            4556678888899999999999999999999  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++....+.+..+--+++.+.
T Consensus       192 l~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         192 LPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             HHHHhCCCCchHHHHHHHHHH
Confidence            999888887877777776554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.82  E-value=2.2e-08  Score=51.60  Aligned_cols=44  Identities=18%  Similarity=0.045  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhcc
Q 033440           71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      |.++..+|.+|..+|++++|+..++++++.+|+++.+|..+|.+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            35678899999999999999999999999999999999988864

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.82  E-value=6.4e-08  Score=61.25  Aligned_cols=80  Identities=24%  Similarity=0.296  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC----H
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN----V  105 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~  105 (119)
                      .+..+-..|..+-..|  +.+.|++.|.++|.+    .|.++.+|.||+.++...|+.++|+.++++++++..+.    .
T Consensus        42 ~S~~LEl~~valaE~g--~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac  115 (175)
T KOG4555|consen   42 ASRELELKAIALAEAG--DLDGALELFGQALCL----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC  115 (175)
T ss_pred             HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHh----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence            4566777888888888  999999999999999    99999999999999999999999999999999987543    3


Q ss_pred             HHHHHhhccC
Q 033440          106 KVVILCSGSH  115 (119)
Q Consensus       106 ~a~~~~a~~~  115 (119)
                      .++..+|.+|
T Consensus       116 qa~vQRg~ly  125 (175)
T KOG4555|consen  116 QAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHH
Confidence            5666666554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=3.8e-09  Score=77.26  Aligned_cols=83  Identities=31%  Similarity=0.448  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      .+++....+|+.+++..  +|..|+..|+.||++    +|+++..|.+|+.+++.+++|++|..++++.++++|..++++
T Consensus        47 ~~Ae~~k~~gn~~yk~k--~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~  120 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQK--TYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ  120 (486)
T ss_pred             HHHHHHHhhcchHHHHh--hHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence            36777889999999977  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHhhccCcC
Q 033440          109 ILCSGSHPN  117 (119)
Q Consensus       109 ~~~a~~~~~  117 (119)
                      .+.++|+..
T Consensus       121 ~r~~~c~~a  129 (486)
T KOG0550|consen  121 LREGQCHLA  129 (486)
T ss_pred             cchhhhhhh
Confidence            999988753

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=1.1e-07  Score=64.17  Aligned_cols=90  Identities=16%  Similarity=0.188  Sum_probs=75.2

Q ss_pred             HHhHHHHHHhcHH-----HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           17 KADLDAIAALKES-----AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        17 ~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ...+..++.+.|.     .+..|.++|.++.+.+  .++.|+...+++|++    .|.+-.++..||.+|-++.+|++|+
T Consensus       115 ~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~--k~e~aI~dcsKaiel----~pty~kAl~RRAeayek~ek~eeal  188 (271)
T KOG4234|consen  115 NSKYQEALESCPSTSTEERSILYSNRAAALIKLR--KWESAIEDCSKAIEL----NPTYEKALERRAEAYEKMEKYEEAL  188 (271)
T ss_pred             HHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh--hHHHHHHHHHhhHhc----CchhHHHHHHHHHHHHhhhhHHHHH
Confidence            3344445554443     4566788999999999  899999999999999    9999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHhh
Q 033440           92 TDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a  112 (119)
                      .+|.++++++|....+.-..+
T Consensus       189 eDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  189 EDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHHHhCcchHHHHHHHH
Confidence            999999999998876654433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.77  E-value=1.9e-08  Score=48.81  Aligned_cols=34  Identities=32%  Similarity=0.477  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +.+++++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3578888999999999999999999999988864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.76  E-value=1.1e-07  Score=74.90  Aligned_cols=96  Identities=18%  Similarity=0.204  Sum_probs=85.2

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+.+.+..++.++|..+.+|+.+|.+|-++|  |.++++.....|--+    +|.+...|..++.....+|++.+|+-+|
T Consensus       157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~~i~qA~~cy  230 (895)
T KOG2076|consen  157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRG--DIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLGNINQARYCY  230 (895)
T ss_pred             HHHHHHHHHHHhCccchhhHHHHHHHHHHcc--cHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            4556777888889999999999999999988  999999998888888    8888899999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccCc
Q 033440           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+|+..+|.+++..++++..|-
T Consensus       231 ~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  231 SRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             HHHHhcCCcchHHHHHHHHHHH
Confidence            9999999999999998887663

>PRK11906 transcriptional regulator; Provisional

Probab=98.76  E-value=7.2e-08  Score=71.67  Aligned_cols=89  Identities=18%  Similarity=0.118  Sum_probs=82.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ..++....+++..+++.++.++..+|......+  +++.|+..+++|+.+    +|+.+.+++..|.+....|+.++|+.
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~--~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~~~~a~~  393 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSG--QAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEKIEEARI  393 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--chhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            345667788889999999999999999999998  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHH
Q 033440           93 DAEEALKLCPTNVKV  107 (119)
Q Consensus        93 ~~~~al~l~p~~~~a  107 (119)
                      ..+++++++|....+
T Consensus       394 ~i~~alrLsP~~~~~  408 (458)
T PRK11906        394 CIDKSLQLEPRRRKA  408 (458)
T ss_pred             HHHHHhccCchhhHH
Confidence            999999999976554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.5e-07  Score=71.14  Aligned_cols=75  Identities=29%  Similarity=0.415  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ..+.++|..+-+.+  .+++|+..|+++|.+    .|.++.+|...|.||..+|+++.|+..+.++|.++|++..+--.+
T Consensus       456 p~~~NLGH~~Rkl~--~~~eAI~~~q~aL~l----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL  529 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLN--KYEEAIDYYQKALLL----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL  529 (611)
T ss_pred             HHHHhHHHHHHHHh--hHHHHHHHHHHHHHc----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence            34789999999988  999999999999999    999999999999999999999999999999999999996544443


Q ss_pred             h
Q 033440          112 S  112 (119)
Q Consensus       112 a  112 (119)
                      +
T Consensus       530 ~  530 (611)
T KOG1173|consen  530 K  530 (611)
T ss_pred             H
Confidence            3

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.71  E-value=3.7e-08  Score=69.20  Aligned_cols=97  Identities=14%  Similarity=0.097  Sum_probs=59.0

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++.+.+....... .++..+......+...+  +++++...+.++... +. .+.++.++..+|.++.+.|++++|+.++
T Consensus        95 ~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~--~~~~~~~~l~~~~~~-~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   95 EALKLAEKAYERD-GDPRYLLSALQLYYRLG--DYDEAEELLEKLEEL-PA-APDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ------------------------H-HHHTT---HHHHHHHHHHHHH--T----T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             ccccccccccccc-cccchhhHHHHHHHHHh--HHHHHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444444443333 45677777888889988  999999999997765 11 3678899999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccCc
Q 033440           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++++++|+++.++..++.++.
T Consensus       170 ~~al~~~P~~~~~~~~l~~~li  191 (280)
T PF13429_consen  170 RKALELDPDDPDARNALAWLLI  191 (280)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999999988877654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.71  E-value=6.8e-08  Score=76.56  Aligned_cols=98  Identities=20%  Similarity=0.244  Sum_probs=85.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -+.+...+..+....|++...+..++.+.|+.+  ||-.|+.+|..++.++|..   .+.....+|+|+.++|+.+.|+.
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkk--dY~~al~yyk~al~inp~~---~aD~rIgig~Cf~kl~~~~~a~~  220 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKK--DYRGALKYYKKALRINPAC---KADVRIGIGHCFWKLGMSEKALL  220 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccc--cHHHHHHHHHHHHhcCccc---CCCccchhhhHHHhccchhhHHH
Confidence            456777888899999999999999999999987  9999999999999994442   23445678999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .+.++++++|.++.++..+|.+-
T Consensus       221 a~~ralqLdp~~v~alv~L~~~~  243 (1018)
T KOG2002|consen  221 AFERALQLDPTCVSALVALGEVD  243 (1018)
T ss_pred             HHHHHHhcChhhHHHHHHHHHHH
Confidence            99999999999999998888653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.69  E-value=2e-07  Score=65.55  Aligned_cols=80  Identities=13%  Similarity=0.018  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHH-HHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC---
Q 033440           31 AIELKEKGNEY-VKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT---  103 (119)
Q Consensus        31 ~~~~~~~g~~~-~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---  103 (119)
                      ....+..+..+ ++.|  +|++|+..|...+..    .|+.   +.+++.+|.+|+..|++++|+..|+++++..|+   
T Consensus       142 e~~~Y~~A~~l~~~~~--~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        142 ANTDYNAAIALVQDKS--RQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            46667777776 5667  999999999999999    7776   579999999999999999999999999998887   


Q ss_pred             CHHHHHHhhccCc
Q 033440          104 NVKVVILCSGSHP  116 (119)
Q Consensus       104 ~~~a~~~~a~~~~  116 (119)
                      .+.+++.+|.++.
T Consensus       216 ~~dAl~klg~~~~  228 (263)
T PRK10803        216 AADAMFKVGVIMQ  228 (263)
T ss_pred             hhHHHHHHHHHHH
Confidence            4788999888774

>PRK15331 chaperone protein SicA; Provisional

Probab=98.68  E-value=2.4e-07  Score=60.52  Aligned_cols=85  Identities=11%  Similarity=-0.031  Sum_probs=75.1

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+...+..+...++-+.+-+..+|.++...+  +|++|+..|..+..+    ++++|..++..|.|++.+|+...|...
T Consensus        54 ~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--~y~~Ai~~Y~~A~~l----~~~dp~p~f~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331         54 DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--QFQKACDLYAVAFTL----LKNDYRPVFFTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHc----ccCCCCccchHHHHHHHhCCHHHHHHH
Confidence            34556677777788888999999999999977  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCH
Q 033440           94 AEEALKLCPTNV  105 (119)
Q Consensus        94 ~~~al~l~p~~~  105 (119)
                      +..++. .|.+.
T Consensus       128 f~~a~~-~~~~~  138 (165)
T PRK15331        128 FELVNE-RTEDE  138 (165)
T ss_pred             HHHHHh-CcchH
Confidence            999988 45543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.67  E-value=3.5e-07  Score=69.80  Aligned_cols=76  Identities=18%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ++.++..+..+|..+...|  ++++|...+++|+++    .| ++.+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       416 ~~~~~~~~~ala~~~~~~g--~~~~A~~~l~rAl~L----~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKG--KTDEAYQAINKAIDL----EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CcCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            6667788888999998888  999999999999999    88 5789999999999999999999999999999999875


Q ss_pred             HHH
Q 033440          107 VVI  109 (119)
Q Consensus       107 a~~  109 (119)
                      -+.
T Consensus       489 ~~~  491 (517)
T PRK10153        489 LYW  491 (517)
T ss_pred             HHH
Confidence            443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.67  E-value=9.5e-08  Score=46.10  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           71 SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        71 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +.+++.+|.+++.+|++++|+.+++++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.65  E-value=3.6e-07  Score=57.05  Aligned_cols=68  Identities=29%  Similarity=0.287  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      ++++.|..+-..|  +.++|+..|+++++.- ...+....++.++|.++..+|++++|+..+++++.-.|+
T Consensus         3 ~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLG--REEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcC--CHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            3455555555555  5555555555555531 002223345555555555555555555555555555444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.62  E-value=8.9e-07  Score=58.60  Aligned_cols=91  Identities=18%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC--------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKG--------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-   85 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-   85 (119)
                      ...+..+.....||.+++.+++=|..+....        +.-+++|+..|++||.+    +|+...+++++|.+|..++ 
T Consensus         9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----NPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHh
Confidence            4566677777889999999999888876543        12567788999999999    9999999999999998765 


Q ss_pred             ----------CHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           86 ----------NYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        86 ----------~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                                .|++|..++.+++..+|+|.....
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k  118 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK  118 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence                      388999999999999998865443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.62  E-value=5e-07  Score=57.86  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=73.8

Q ss_pred             HhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc---hHHHHHHHHHHHHHhcCHHHHH
Q 033440           18 ADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        18 ~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ..++.+...+|+.   ..+...+|..++..|  ++++|+..|+.++..    .|+   .+.+...+|.+++..|+|++|+
T Consensus        32 ~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g--~~~~A~~~l~~~~~~----~~d~~l~~~a~l~LA~~~~~~~~~d~Al  105 (145)
T PF09976_consen   32 AAAEQLAKDYPSSPYAALAALQLAKAAYEQG--DYDEAKAALEKALAN----APDPELKPLARLRLARILLQQGQYDEAL  105 (145)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhh----CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3466666666665   677888999999998  999999999999997    443   3568888999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..++. +.-.+..+.++..+|.++..
T Consensus       106 ~~L~~-~~~~~~~~~~~~~~Gdi~~~  130 (145)
T PF09976_consen  106 ATLQQ-IPDEAFKALAAELLGDIYLA  130 (145)
T ss_pred             HHHHh-ccCcchHHHHHHHHHHHHHH
Confidence            99966 34445556778888887753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=6.2e-07  Score=62.27  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=81.1

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++++.++.++..+|++...+...-.+.-.+|  .-.+||+.....++.    -+.+..++..++.+|+..|.|++|.-+
T Consensus       103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G--K~l~aIk~ln~YL~~----F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQG--KNLEAIKELNEYLDK----FMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hhHHHHHHHHhccCcchhHHHHHHHHHHHHcC--CcHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            45667777777777777777777777777777  566777777777777    888999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++++-++|.++..+.++|.+++
T Consensus       177 lEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  177 LEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHH
Confidence            99999999999999888887764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=3.1e-07  Score=62.79  Aligned_cols=84  Identities=19%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +...+..+.++|+.|-..|  -+.-|-..+++++.+    .|..+.+++.+|.-+...|+|+.|...++-++++||.+.-
T Consensus        61 ~eeRA~l~fERGvlYDSlG--L~~LAR~DftQaLai----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y  134 (297)
T COG4785          61 DEERAQLLFERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  134 (297)
T ss_pred             hHHHHHHHHHhcchhhhhh--HHHHHhhhhhhhhhc----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence            4557888899999999988  899999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCc
Q 033440          107 VVILCSGSHP  116 (119)
Q Consensus       107 a~~~~a~~~~  116 (119)
                      ++.++|.+++
T Consensus       135 a~lNRgi~~Y  144 (297)
T COG4785         135 AHLNRGIALY  144 (297)
T ss_pred             HHhccceeee
Confidence            9999987653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.58  E-value=2.4e-07  Score=66.66  Aligned_cols=85  Identities=13%  Similarity=0.025  Sum_probs=67.0

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+|.....+...|..+...|  ++++|+..+++++++    .|+++.++..+|.++...|++++|+..+.+++...|..
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G--~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAG--QYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            455666667777888888888  899999999999998    88888888889999999999999999999998887643


Q ss_pred             H----HHHHHhhccC
Q 033440          105 V----KVVILCSGSH  115 (119)
Q Consensus       105 ~----~a~~~~a~~~  115 (119)
                      +    ..++.+|.++
T Consensus       182 ~~~~~~~~~~la~~~  196 (355)
T cd05804         182 SMLRGHNWWHLALFY  196 (355)
T ss_pred             cchhHHHHHHHHHHH
Confidence            2    2344555554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.57  E-value=1.1e-08  Score=73.34  Aligned_cols=83  Identities=27%  Similarity=0.340  Sum_probs=73.6

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .-+.+...+..+..++..|  +++.|++.|+.+|.+    .|..+.+|..|+.++++++++..|+.+|..+++++|+..+
T Consensus       110 ~~eqa~e~k~~A~eAln~G--~~~~ai~~~t~ai~l----np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~  183 (377)
T KOG1308|consen  110 MMDQANDKKVQASEALNDG--EFDTAIELFTSAIEL----NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK  183 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCc--chhhhhccccccccc----CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence            3445667778888999999  999999999999999    9999999999999999999999999999999999999887


Q ss_pred             HHHHhhccC
Q 033440          107 VVILCSGSH  115 (119)
Q Consensus       107 a~~~~a~~~  115 (119)
                      .|-.+++++
T Consensus       184 ~ykfrg~A~  192 (377)
T KOG1308|consen  184 GYKFRGYAE  192 (377)
T ss_pred             ccchhhHHH
Confidence            776665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.57  E-value=3.9e-07  Score=65.63  Aligned_cols=51  Identities=24%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .|..+..+..+|.++...|++++|+..++++++++|+++.++..+|.+++.
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            455556667788899999999999999999999999999999999988754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.57  E-value=3.9e-07  Score=71.83  Aligned_cols=85  Identities=19%  Similarity=0.255  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      .+++.-+.+.+..+.+.|  .|.+|++++..++...+   -.+..+|+..|.||..+|.+++|++.|.++|.++|++..+
T Consensus       411 ~d~~dL~~d~a~al~~~~--~~~~Al~~l~~i~~~~~---~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~  485 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIG--KYKEALRLLSPITNREG---YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA  485 (895)
T ss_pred             hhhHHHHHHHHHHHHhcc--cHHHHHHHHHHHhcCcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence            346778899999999999  99999999999888721   1457899999999999999999999999999999999999


Q ss_pred             HHHhhccCcC
Q 033440          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      ...++.++.+
T Consensus       486 Ri~Lasl~~~  495 (895)
T KOG2076|consen  486 RITLASLYQQ  495 (895)
T ss_pred             hhhHHHHHHh
Confidence            9999887654

>PRK11906 transcriptional regulator; Provisional

Probab=98.55  E-value=6.2e-07  Score=66.79  Aligned_cols=100  Identities=9%  Similarity=-0.027  Sum_probs=87.3

Q ss_pred             CChhhHHhHHHHH---HhcHHHHHHHHHHHHHHHHh---C----hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH
Q 033440           12 KTESEKADLDAIA---ALKESAAIELKEKGNEYVKK---G----KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN   81 (119)
Q Consensus        12 ~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~---g----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~   81 (119)
                      ..+.+...+.++.   .++|..+.++.-++.+++..   |    ..+-.+|++...+|+++    +|.|+.++..+|.+.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~~Da~a~~~~g~~~  348 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TTVDGKILAIMGLIT  348 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence            3456667788888   99999999999999998765   0    12456788999999999    999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           82 LLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ...++++.|+..+++++.++|++..+|+..|.++
T Consensus       349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999988743

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.54  E-value=2.7e-07  Score=51.01  Aligned_cols=53  Identities=19%  Similarity=0.311  Sum_probs=47.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS   71 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~   71 (119)
                      .+++...++.++..+|.++.++..+|.+++..|  ++++|+..|+++++.    +|++|
T Consensus        13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~a~~~----~P~~p   65 (65)
T PF13432_consen   13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG--RYDEALAYYERALEL----DPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCC
Confidence            356788899999999999999999999999999  999999999999999    88775

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.54  E-value=9.3e-07  Score=70.64  Aligned_cols=95  Identities=16%  Similarity=0.015  Sum_probs=56.1

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .++..+.++.+.+|..+.........+...|  ++++|+..+++++.-    .|.........|.++..+|+|++|+..+
T Consensus        52 ~Al~~L~qaL~~~P~~~~av~dll~l~~~~G--~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~gdyd~Aiely  125 (822)
T PRK14574         52 PVLDYLQEESKAGPLQSGQVDDWLQIAGWAG--RDQEVIDVYERYQSS----MNISSRGLASAARAYRNEKRWDQALALW  125 (822)
T ss_pred             HHHHHHHHHHhhCccchhhHHHHHHHHHHcC--CcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4555566666666665433335555555555  566666666665533    3444444444466676777777777777


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++.+|+++.+++.++..+
T Consensus       126 ~kaL~~dP~n~~~l~gLa~~y  146 (822)
T PRK14574        126 QSSLKKDPTNPDLISGMIMTQ  146 (822)
T ss_pred             HHHHhhCCCCHHHHHHHHHHH
Confidence            777777777776666555544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=1.7e-07  Score=69.61  Aligned_cols=52  Identities=19%  Similarity=0.135  Sum_probs=48.1

Q ss_pred             CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH---HHHhhccCcC
Q 033440           66 SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV---VILCSGSHPN  117 (119)
Q Consensus        66 ~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a---~~~~a~~~~~  117 (119)
                      .+|+++..++|+|.+|+.+|+|++|+..|+++++++|++..+   ||++|.+|..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~  124 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY  124 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Confidence            378999999999999999999999999999999999999865   9999998854

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.52  E-value=1.5e-06  Score=64.29  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +..+..++++.+.+|+   ....++..+...+  +..+|+..+.++|..    .|.+..++..-+..++..++++.|+..
T Consensus       186 ~~ai~lle~L~~~~pe---v~~~LA~v~l~~~--~E~~AI~ll~~aL~~----~p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  186 DEAIELLEKLRERDPE---VAVLLARVYLLMN--EEVEAIRLLNEALKE----NPQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             HHHHHHHHHHHhcCCc---HHHHHHHHHHhcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3444555555555543   3344566666665  667777777777776    677777777777777777777777777


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++++.+.|+....|+.++.+|.
T Consensus       257 Ak~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHH
Confidence            77777777777777777777664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.52  E-value=5.1e-07  Score=72.28  Aligned_cols=100  Identities=15%  Similarity=0.017  Sum_probs=81.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---------------CcchHHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---------------DSENSVLYANR   77 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~   77 (119)
                      .++.+..++.....+|+....++-+|..+++.+  ++..+...  .++...+..               .+.+..+++.+
T Consensus        47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~--~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~L  122 (906)
T PRK14720         47 TDEAKDICEEHLKEHKKSISALYISGILSLSRR--PLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTL  122 (906)
T ss_pred             HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc--chhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHH
Confidence            456777778888889999999999999999987  77777765  555552111               23444899999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |.||-++|++++|...++++++++|+|+.++.++|..|.
T Consensus       123 A~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a  161 (906)
T PRK14720        123 AEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE  161 (906)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988664

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.50  E-value=1.7e-07  Score=45.74  Aligned_cols=34  Identities=35%  Similarity=0.657  Sum_probs=31.1

Q ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           55 CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        55 ~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .|+++|++    +|+++.+++++|.+|...|++++|++
T Consensus         1 ~y~kAie~----~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL----NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH----CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            37899999    99999999999999999999999863

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.49  E-value=5.5e-07  Score=65.25  Aligned_cols=89  Identities=22%  Similarity=0.249  Sum_probs=81.6

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++++.+......+|.++..+.+++..|++..  .|..|....+.||.+    +.....+|..|+.+...+|+..+|-.+
T Consensus       114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K--~FA~AE~DC~~AiaL----d~~Y~KAYSRR~~AR~~Lg~~~EAKkD  187 (536)
T KOG4648|consen  114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK--SFAQAEEDCEAAIAL----DKLYVKAYSRRMQARESLGNNMEAKKD  187 (536)
T ss_pred             hHHHHHhhhhhccCCCCccchhhHHHHHHHHH--HHHHHHHhHHHHHHh----hHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            45777788888889988999999999999987  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHH
Q 033440           94 AEEALKLCPTNVKVV  108 (119)
Q Consensus        94 ~~~al~l~p~~~~a~  108 (119)
                      |+.+|+++|.+....
T Consensus       188 ~E~vL~LEP~~~ELk  202 (536)
T KOG4648|consen  188 CETVLALEPKNIELK  202 (536)
T ss_pred             HHHHHhhCcccHHHH
Confidence            999999999876544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.45  E-value=1.5e-06  Score=66.44  Aligned_cols=101  Identities=13%  Similarity=0.034  Sum_probs=79.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhCh------hcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGK------KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      ..+++..++++.+++|+.+.++..++.++.....      .+...+.....+++.+ +. +|.++.+|..+|..+...|+
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~-~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PE-LNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-cc-CcCChHHHHHHHHHHHhcCC
Confidence            4577888999999999999999998887765420      0334555555665552 11 56677889999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           87 YRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++|...+++++.++| +..+|..+|.++.
T Consensus       436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~  464 (517)
T PRK10153        436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYE  464 (517)
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            9999999999999999 5889999997663

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=4e-07  Score=70.60  Aligned_cols=81  Identities=14%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+.+.+..|.....++  +|+++.+.++..+++    +|.....|+++|.|..+++++..|..+|...+.++|++..+|.
T Consensus       484 sarA~r~~~~~~~~~~--~fs~~~~hle~sl~~----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn  557 (777)
T KOG1128|consen  484 SARAQRSLALLILSNK--DFSEADKHLERSLEI----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN  557 (777)
T ss_pred             hHHHHHhhccccccch--hHHHHHHHHHHHhhc----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh
Confidence            4445555666666666  888888888888888    8888888888888888888888888888888888888888888


Q ss_pred             HhhccCc
Q 033440          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      +++.+|+
T Consensus       558 Nls~ayi  564 (777)
T KOG1128|consen  558 NLSTAYI  564 (777)
T ss_pred             hhhHHHH
Confidence            8877664

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.44  E-value=1.2e-06  Score=69.70  Aligned_cols=81  Identities=17%  Similarity=0.267  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      -.++.++.+|..+..+|  ||++|-.+|.+++..    +|++ ...++.+|+.|++.|+++.|+..+.++++..|++..+
T Consensus       305 ~~aes~Y~~gRs~Ha~G--d~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et  378 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQG--DFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET  378 (1018)
T ss_pred             HHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence            34555666666666655  666666666666665    5555 4555666666666666666666666666666666666


Q ss_pred             HHHhhccC
Q 033440          108 VILCSGSH  115 (119)
Q Consensus       108 ~~~~a~~~  115 (119)
                      ..-+|..|
T Consensus       379 m~iLG~Ly  386 (1018)
T KOG2002|consen  379 MKILGCLY  386 (1018)
T ss_pred             HHHHHhHH
Confidence            66665554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.43  E-value=1.9e-06  Score=63.72  Aligned_cols=77  Identities=13%  Similarity=0.145  Sum_probs=70.9

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..+.+..+.+|.++..+..++..+.+.+  +++.|+....+++..    .|++...|+.++.||..+|+|++|+-.+
T Consensus       218 ~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  218 EAIRLLNEALKENPQDSELLNLQAEFLLSKK--KYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            5677788888889999999999999999988  999999999999999    9999999999999999999999999877


Q ss_pred             HHH
Q 033440           95 EEA   97 (119)
Q Consensus        95 ~~a   97 (119)
                      +-+
T Consensus       292 Ns~  294 (395)
T PF09295_consen  292 NSC  294 (395)
T ss_pred             hcC
Confidence            643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=2.5e-07  Score=69.13  Aligned_cols=71  Identities=24%  Similarity=0.260  Sum_probs=37.2

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      .+.+..++.=++.++.+.||..|.+|  |+++|.+.|.+++.-    +.....+++|.|..+..+|+.++|+..+-+
T Consensus       479 ad~aln~dryn~~a~~nkgn~~f~ng--d~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  479 ADIALNIDRYNAAALTNKGNIAFANG--DLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             HHHHhcccccCHHHhhcCCceeeecC--cHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence            33344444445555666666666655  666666666666655    444444444444444444444444444444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.43  E-value=1.6e-06  Score=48.85  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA   78 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a   78 (119)
                      .++..+.++.+..++|+++..+...|.++++.|  +|++|+..++++++.    .|+++.+...++
T Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~l~~~l~~----~p~~~~~~~~~a   70 (73)
T PF13371_consen   11 YEEALEVLERALELDPDDPELWLQRARCLFQLG--RYEEALEDLERALEL----SPDDPDARALRA   70 (73)
T ss_pred             HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCcHHHHHHHH
Confidence            457888999999999999999999999999999  999999999999999    898887766554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.43  E-value=2e-07  Score=69.38  Aligned_cols=94  Identities=19%  Similarity=0.260  Sum_probs=86.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.++..+.+++.++|+.+.-+.+++..+++.+  +|..|+....+||+.    +|....+|+.+|.+.+.++++.+|+.+
T Consensus        21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e--~~~~Al~Da~kaie~----dP~~~K~Y~rrg~a~m~l~~~~~A~~~   94 (476)
T KOG0376|consen   21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVE--SFGGALHDALKAIEL----DPTYIKAYVRRGTAVMALGEFKKALLD   94 (476)
T ss_pred             HHHHHHHHHHHhcCCcceeeechhhhhheeec--hhhhHHHHHHhhhhc----CchhhheeeeccHHHHhHHHHHHHHHH
Confidence            45667788889999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhc
Q 033440           94 AEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~  113 (119)
                      +++...+.|+.+.+......
T Consensus        95 l~~~~~l~Pnd~~~~r~~~E  114 (476)
T KOG0376|consen   95 LEKVKKLAPNDPDATRKIDE  114 (476)
T ss_pred             HHHhhhcCcCcHHHHHHHHH
Confidence            99999999999988765543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=5e-07  Score=61.80  Aligned_cols=84  Identities=15%  Similarity=0.201  Sum_probs=78.7

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +.-++++...++|+.+..+.-+|.-+...|  +|+.|.+.|+..+++    +|..--++.|||..++--|+|.-|..++.
T Consensus        84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~--~fdaa~eaFds~~EL----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~  157 (297)
T COG4785          84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRYKLAQDDLL  157 (297)
T ss_pred             HhhhhhhhhhcCCCcHHHHHHHHHHHHhcc--cchHHHHHhhhHhcc----CCcchHHHhccceeeeecCchHhhHHHHH
Confidence            345678889999999999999999999999  999999999999999    99999999999999999999999999999


Q ss_pred             HHHhhCCCCH
Q 033440           96 EALKLCPTNV  105 (119)
Q Consensus        96 ~al~l~p~~~  105 (119)
                      +--.-||.+|
T Consensus       158 ~fYQ~D~~DP  167 (297)
T COG4785         158 AFYQDDPNDP  167 (297)
T ss_pred             HHHhcCCCCh
Confidence            9999998875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.42  E-value=1e-06  Score=62.80  Aligned_cols=92  Identities=20%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .++.....+.+........+++.+..|++.+++|...|++....    .+.++.++...+.|++.+|+|++|.+.+.+++
T Consensus       153 ~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al  228 (290)
T PF04733_consen  153 ELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL  228 (290)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            33444444444444444555566666644677888888776665    66777777778888888888888888888888


Q ss_pred             hhCCCCHHHHHHhhcc
Q 033440           99 KLCPTNVKVVILCSGS  114 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~  114 (119)
                      ..+|.++.++.+++.+
T Consensus       229 ~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  229 EKDPNDPDTLANLIVC  244 (290)
T ss_dssp             CC-CCHHHHHHHHHHH
T ss_pred             HhccCCHHHHHHHHHH
Confidence            8888777777776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=3.8e-07  Score=65.68  Aligned_cols=95  Identities=13%  Similarity=0.083  Sum_probs=63.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ++.+.+..+.+.+|.+.++..-.|.-||-.+  +++-|+++|++.+.+    .-.++.++.|+|.|.+-.++++-++..+
T Consensus       308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~--~PE~AlryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPINVEAIACIAVGYFYDN--NPEMALRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHHHHHHHHHhcCCccceeeeeeeeccccCC--ChHHHHHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence            3445556666666666666666666666666  677777777777776    6667777777777777777777777777


Q ss_pred             HHHHhhC--CC-CHHHHHHhhccC
Q 033440           95 EEALKLC--PT-NVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~--p~-~~~a~~~~a~~~  115 (119)
                      .+++..-  |+ -.+.||++|.+.
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeE
Confidence            7777653  32 256777776653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.41  E-value=1.6e-06  Score=67.65  Aligned_cols=86  Identities=20%  Similarity=0.123  Sum_probs=79.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHH--HHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAID--CYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .++...+..++.++|++......+|.++...|  +..-|..  ..+.++++    +|.++.+|+++|.++.++|+.++|.
T Consensus       701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G--~~~la~~~~~L~dalr~----dp~n~eaW~~LG~v~k~~Gd~~~Aa  774 (799)
T KOG4162|consen  701 EEAKEAFLVALALDPDHVPSMTALAELLLELG--SPRLAEKRSLLSDALRL----DPLNHEAWYYLGEVFKKLGDSKQAA  774 (799)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CcchHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccchHHHH
Confidence            45677888899999999999999999999999  7777777  89999999    9999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCH
Q 033440           92 TDAEEALKLCPTNV  105 (119)
Q Consensus        92 ~~~~~al~l~p~~~  105 (119)
                      ..|.-++.+++.+|
T Consensus       775 ecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  775 ECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHhhccCCC
Confidence            99999999998765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.39  E-value=8.1e-06  Score=51.86  Aligned_cols=91  Identities=18%  Similarity=0.161  Sum_probs=76.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+++.+.+++.+.|..+.+|.+++..+--+|  +.++|++.+++++++.......--.+|..||..|..+|+-+.|..
T Consensus        59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~--~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~  136 (175)
T KOG4555|consen   59 LDGALELFGQALCLAPERASAYNNRAQALRLQG--DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA  136 (175)
T ss_pred             hHHHHHHHHHHHHhcccchHhhccHHHHHHHcC--ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence            345677788888889999999999999999988  999999999999998433223344689999999999999999999


Q ss_pred             HHHHHHhhCCCCH
Q 033440           93 DAEEALKLCPTNV  105 (119)
Q Consensus        93 ~~~~al~l~p~~~  105 (119)
                      ++..+-++...+.
T Consensus       137 DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  137 DFEAAAQLGSKFA  149 (175)
T ss_pred             hHHHHHHhCCHHH
Confidence            9999888765443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.39  E-value=1.8e-06  Score=66.35  Aligned_cols=95  Identities=16%  Similarity=0.064  Sum_probs=83.8

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +..+.++++++..|++++++..+|..+...|  +-++|..+...++..    ++.....+...|.++..-++|.+||..|
T Consensus        25 kgLK~~~~iL~k~~eHgeslAmkGL~L~~lg--~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   25 KGLKLIKQILKKFPEHGESLAMKGLTLNCLG--KKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             hHHHHHHHHHHhCCccchhHHhccchhhccc--chHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence            4556777888889999999999999999999  889999999999998    8889999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.|+.++|+|...|+-++...
T Consensus        99 ~nAl~~~~dN~qilrDlslLQ  119 (700)
T KOG1156|consen   99 RNALKIEKDNLQILRDLSLLQ  119 (700)
T ss_pred             HHHHhcCCCcHHHHHHHHHHH
Confidence            999999999999888877543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.36  E-value=1.2e-05  Score=51.53  Aligned_cols=89  Identities=22%  Similarity=0.272  Sum_probs=72.0

Q ss_pred             hHHhHHHHHHhcH---HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC------
Q 033440           16 EKADLDAIAALKE---SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN------   86 (119)
Q Consensus        16 ~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~------   86 (119)
                      +++.++.+....|   --..+-..+|-.+++.+  +|.+|+..+++-|++-|. +|.-+-+++.+|.+++.+..      
T Consensus        29 A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~--~y~~A~a~~~rFirLhP~-hp~vdYa~Y~~gL~~~~~~~~~~~~~  105 (142)
T PF13512_consen   29 AIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG--DYEEAIAAYDRFIRLHPT-HPNVDYAYYMRGLSYYEQDEGSLQSF  105 (142)
T ss_pred             HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHHHhhhHHhhh
Confidence            3444555544433   24466778999999998  999999999999999665 55666899999999999987      


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHH
Q 033440           87 ---------YRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        87 ---------~~~A~~~~~~al~l~p~~~~a  107 (119)
                               ..+|+.+++++++.-|++..+
T Consensus       106 ~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  106 FRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                     999999999999999988654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.34  E-value=5.8e-06  Score=52.87  Aligned_cols=79  Identities=18%  Similarity=0.255  Sum_probs=63.7

Q ss_pred             ChhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           13 TESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+++...+..+....++   ...+...++.+++..|  +|++|+..+.. +.-    .+..+.++..+|.++...|++++
T Consensus        64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~--~~d~Al~~L~~-~~~----~~~~~~~~~~~Gdi~~~~g~~~~  136 (145)
T PF09976_consen   64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQG--QYDEALATLQQ-IPD----EAFKALAAELLGDIYLAQGDYDE  136 (145)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHh-ccC----cchHHHHHHHHHHHHHHCCCHHH
Confidence            34566777777665432   3557778999999998  99999999966 333    57788899999999999999999


Q ss_pred             HHHHHHHHH
Q 033440           90 AFTDAEEAL   98 (119)
Q Consensus        90 A~~~~~~al   98 (119)
                      |+..|+++|
T Consensus       137 A~~~y~~Al  145 (145)
T PF09976_consen  137 ARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhC
Confidence            999999875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.33  E-value=1.7e-06  Score=44.45  Aligned_cols=42  Identities=17%  Similarity=0.216  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      ..+..+|..+...|  ++++|++.|+++|+.    +|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G--~~~~A~~~~~~~l~~----~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLG--QPDEAERLLRRALAL----DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCCHHHHHHhhh
Confidence            56788999999999  999999999999999    9999999988875

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.31  E-value=2.5e-06  Score=47.36  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=53.7

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .++++..++.+...+|++...+..+|.++++.|  ++++|...+.+++..    +|+++.++.-++.
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~----~~~~~~~~~l~a~   67 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQG--QYDEAEELLERLLKQ----DPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---HHHHHHHHHCCHGG----GTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCHHHHHHHHhc
Confidence            356888999999999999999999999999999  999999999999999    9998877766554

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=3.9e-06  Score=62.66  Aligned_cols=84  Identities=13%  Similarity=0.140  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      |....+.+..+...+..|  +++.|+..++..+..    .|+|+.+....+.++++.++.++|++.+++++.++|+.+..
T Consensus       303 ~~~~aa~YG~A~~~~~~~--~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         303 RGGLAAQYGRALQTYLAG--QYDEALKLLQPLIAA----QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             ccchHHHHHHHHHHHHhc--ccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence            567788899999999999  999999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHhhccCcC
Q 033440          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      ++.+|.+|++
T Consensus       377 ~~~~a~all~  386 (484)
T COG4783         377 QLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.30  E-value=2.5e-06  Score=41.11  Aligned_cols=34  Identities=35%  Similarity=0.665  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN   70 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~   70 (119)
                      +..|..+|.+++..|  ++++|+..|+++|++    +|++
T Consensus         1 a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLG--DYEEALEYYQRALEL----DPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTH
T ss_pred             CHHHHHHHHHHHHhC--CchHHHHHHHHHHHH----CcCC
Confidence            468999999999999  999999999999999    8764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.29  E-value=1.8e-05  Score=55.06  Aligned_cols=86  Identities=22%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---H
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---K  106 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~  106 (119)
                      -+..|++.|....+.|  +|++|+..|+.....-|. .|....+...++.++++-++|++|+...++=+++.|+++   .
T Consensus        33 p~~~LY~~g~~~L~~g--n~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          33 PASELYNEGLTELQKG--NYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            3778999999999988  999999999999988444 455667889999999999999999999999999998764   5


Q ss_pred             HHHHhhccCcCC
Q 033440          107 VVILCSGSHPNQ  118 (119)
Q Consensus       107 a~~~~a~~~~~~  118 (119)
                      ++|.+|.+++.+
T Consensus       110 ~~YlkgLs~~~~  121 (254)
T COG4105         110 AYYLKGLSYFFQ  121 (254)
T ss_pred             HHHHHHHHHhcc
Confidence            778888776554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.27  E-value=3.2e-06  Score=65.76  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=83.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .+..+.++...+++|-....|+..|.++.+.+  +++.|+..|...+.+    +|++...++|++..|.++|+-.+|...
T Consensus       502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqle--k~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  502 SEADKHLERSLEINPLQLGTWFGLGCAALQLE--KEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             HHHHHHHHHHhhcCccchhHHHhccHHHHHHh--hhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            45677888889999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHH
Q 033440           94 AEEALKLCPTNVKVVIL  110 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~  110 (119)
                      ..++++-+-.++..|-+
T Consensus       576 l~EAlKcn~~~w~iWEN  592 (777)
T KOG1128|consen  576 LKEALKCNYQHWQIWEN  592 (777)
T ss_pred             HHHHhhcCCCCCeeeec
Confidence            99999988766665543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.27  E-value=2.5e-06  Score=41.07  Aligned_cols=33  Identities=36%  Similarity=0.497  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+++.+|.++..+|++++|+..++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            467788888888888888888888888888854

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.26  E-value=9.5e-06  Score=60.03  Aligned_cols=82  Identities=18%  Similarity=0.140  Sum_probs=65.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++.++.++...+.+|+++..+..+|..+.+.+  +|.+|.+.|+++++.    .|++.. +..++.++.++|+.++|..
T Consensus       310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~--~~~~A~~~le~al~~----~P~~~~-~~~La~~~~~~g~~~~A~~  382 (398)
T PRK10747        310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG--EWQEASLAFRAALKQ----RPDAYD-YAWLADALDRLHKPEEAAA  382 (398)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence            445667777777888888888888888888887  888888888888888    777655 4568888888888888888


Q ss_pred             HHHHHHhhC
Q 033440           93 DAEEALKLC  101 (119)
Q Consensus        93 ~~~~al~l~  101 (119)
                      .|++++.+.
T Consensus       383 ~~~~~l~~~  391 (398)
T PRK10747        383 MRRDGLMLT  391 (398)
T ss_pred             HHHHHHhhh
Confidence            888887754

>TIGR00540 hemY_coli hemY protein

Probab=98.26  E-value=1.1e-05  Score=59.76  Aligned_cols=96  Identities=13%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHhcCHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .+.+.+.+..+..|+....+.-.|..+.++|  +++.|..++.++.+.    .|++. .+....+..++..|++++|+..
T Consensus       102 ~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--~~~~A~~~l~~a~~~----~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540       102 KAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--DEARANQHLEEAAEL----AGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            3445555555556655666677788888888  899999999998887    77664 4555568888889999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++.++..|+++.++...+.++.
T Consensus       176 l~~l~~~~P~~~~~l~ll~~~~~  198 (409)
T TIGR00540       176 VDKLLEMAPRHKEVLKLAEEAYI  198 (409)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999888888777664

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1.2e-05  Score=59.46  Aligned_cols=93  Identities=11%  Similarity=-0.001  Sum_probs=83.6

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .-+++.+.+++.++++|....+-..++..+...|  .+..++.++++++..    .| +..++..+|.++.-.+.+.+|+
T Consensus       419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg--~~~D~i~LLe~~L~~----~~-D~~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG--PTKDIIKLLEKHLII----FP-DVNLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC--ccchHHHHHHHHHhh----cc-ccHHHHHHHHHHHHhhhHHHHH
Confidence            3467888899999999999999999999999999  999999999999998    66 5567899999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHh
Q 033440           92 TDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~  111 (119)
                      ++|..+|++||.+..+.-.+
T Consensus       492 ~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  492 EYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             HHHHHHHhcCccchHHHHHH
Confidence            99999999999998776543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.25  E-value=9.4e-06  Score=65.04  Aligned_cols=88  Identities=13%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...+++...-.+.....+..+|..+...|  +|++|++.|+++++.    +|+++.++..++..+...+++++|+.
T Consensus        84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g--dyd~Aiely~kaL~~----dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574         84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEK--RWDQALALWQSSLKK----DPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            345555666655333444555555566777766  777777777777777    77777777777777777777777777


Q ss_pred             HHHHHHhhCCCCHH
Q 033440           93 DAEEALKLCPTNVK  106 (119)
Q Consensus        93 ~~~~al~l~p~~~~  106 (119)
                      .+++++..+|.+..
T Consensus       158 ~l~~l~~~dp~~~~  171 (822)
T PRK14574        158 QATELAERDPTVQN  171 (822)
T ss_pred             HHHHhcccCcchHH
Confidence            77777777776443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.25  E-value=2e-05  Score=54.83  Aligned_cols=88  Identities=18%  Similarity=0.141  Sum_probs=70.5

Q ss_pred             hhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-----
Q 033440           15 SEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-----   86 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-----   86 (119)
                      +++..++.+....|...   .+...+|..+++.+  +|++|+..+++.+..-|+ +|..+.+++.+|.++..++.     
T Consensus        50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~--~y~~A~~~~e~fi~~~P~-~~~~~~a~Y~~g~~~~~~~~~~~~~  126 (243)
T PRK10866         50 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--DLPLAQAAIDRFIRLNPT-HPNIDYVLYMRGLTNMALDDSALQG  126 (243)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCcC-CCchHHHHHHHHHhhhhcchhhhhh
Confidence            45566777777766543   34578999999998  999999999999999666 56777899999999766641     


Q ss_pred             -------------HHHHHHHHHHHHhhCCCCH
Q 033440           87 -------------YRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        87 -------------~~~A~~~~~~al~l~p~~~  105 (119)
                                   -.+|+..+++.++.-|++.
T Consensus       127 ~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        127 FFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             ccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence                         3578999999999999874

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=4.1e-06  Score=40.17  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN   70 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~   70 (119)
                      +..+..+|..++..|  +|++|+..|++++.+    +|++
T Consensus         1 a~~~~~lg~~~~~~~--~~~~A~~~~~~al~l----~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLG--NYEEAIEYFEKALEL----DPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STTS
T ss_pred             CHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CcCC
Confidence            467899999999999  999999999999999    7764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.24  E-value=3.4e-05  Score=48.19  Aligned_cols=82  Identities=20%  Similarity=0.121  Sum_probs=70.1

Q ss_pred             ChhhHHhHHHHHHh---cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc---hHHHHHHHHHHHHHhcC
Q 033440           13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE---NSVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~a~~~~~l~~   86 (119)
                      .+++++.++++...   .+....++..+|..+...|  ++++|+..+++++..    .|+   +..+....+.++..+|+
T Consensus        17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--~~deA~~~L~~~~~~----~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--RYDEALALLEEALEE----FPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCccccHHHHHHHHHHHHHCCC
Confidence            45677888887765   4455788999999999999  999999999999998    666   77888889999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 033440           87 YRRAFTDAEEALKL  100 (119)
Q Consensus        87 ~~~A~~~~~~al~l  100 (119)
                      +++|+..+-.++.-
T Consensus        91 ~~eAl~~~l~~la~  104 (120)
T PF12688_consen   91 PKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887763

>TIGR00540 hemY_coli hemY protein

Probab=98.21  E-value=1.5e-05  Score=59.06  Aligned_cols=79  Identities=16%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             hhHHhHHHHHHhcHHHH--HHHHHHHHHHHHhChhcHHHHHHHHH--HHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440           15 SEKADLDAIAALKESAA--IELKEKGNEYVKKGKKHYSDAIDCYT--RAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      +..+.+++..+.+|+++  ..+..+|..+++.|  +|++|.++++  .+++.    .|++.. +..+|.++.++|+.++|
T Consensus       317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~--~~~~A~~~le~a~a~~~----~p~~~~-~~~La~ll~~~g~~~~A  389 (409)
T TIGR00540       317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG--EFIEAADAFKNVAACKE----QLDAND-LAMAADAFDQAGDKAEA  389 (409)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc--cHHHHHHHHHHhHHhhc----CCCHHH-HHHHHHHHHHcCCHHHH
Confidence            45556666667777777  66667777777777  7777777777  46666    665554 44677777777777777


Q ss_pred             HHHHHHHHhh
Q 033440           91 FTDAEEALKL  100 (119)
Q Consensus        91 ~~~~~~al~l  100 (119)
                      .+.+++++.+
T Consensus       390 ~~~~~~~l~~  399 (409)
T TIGR00540       390 AAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHH
Confidence            7777776553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.2e-05  Score=55.62  Aligned_cols=86  Identities=16%  Similarity=0.124  Sum_probs=76.1

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHH-HhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYV-KKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .+...+..+..+.|++++.+...|.+++ +.|+.+-.++...+++++.+    +|.++.+.+-+|..++..|+|.+|+..
T Consensus       174 ~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~----D~~~iral~lLA~~afe~g~~~~A~~~  249 (287)
T COG4235         174 DALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL----DPANIRALSLLAFAAFEQGDYAEAAAA  249 (287)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHcccHHHHHHH
Confidence            3557788889999999999999988874 44445778899999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCC
Q 033440           94 AEEALKLCPTN  104 (119)
Q Consensus        94 ~~~al~l~p~~  104 (119)
                      .+..+++.|.+
T Consensus       250 Wq~lL~~lp~~  260 (287)
T COG4235         250 WQMLLDLLPAD  260 (287)
T ss_pred             HHHHHhcCCCC
Confidence            99999988754

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=5.1e-06  Score=59.99  Aligned_cols=98  Identities=11%  Similarity=0.048  Sum_probs=75.4

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++-++..+.++++.-...++.+.+.|.+++-.+  +++-++..+.+|+..... +..-+++|+|+|.+..-.|++.-|..
T Consensus       340 PE~AlryYRRiLqmG~~speLf~NigLCC~yaq--Q~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD~nlA~r  416 (478)
T KOG1129|consen  340 PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ--QIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGDFNLAKR  416 (478)
T ss_pred             hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc--chhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccchHHHHH
Confidence            345666777777777777888888888888877  888888888888876332 33456788888888888888888888


Q ss_pred             HHHHHHhhCCCCHHHHHHhhc
Q 033440           93 DAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~  113 (119)
                      .++-+|..||++..++.++|.
T Consensus       417 cfrlaL~~d~~h~ealnNLav  437 (478)
T KOG1129|consen  417 CFRLALTSDAQHGEALNNLAV  437 (478)
T ss_pred             HHHHHhccCcchHHHHHhHHH
Confidence            888888888888888887765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=2.5e-05  Score=58.72  Aligned_cols=97  Identities=15%  Similarity=0.124  Sum_probs=84.8

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++.+-+..++..+.+-.+++++.|..+-..|  +.++|+++|-+.-.+    --+++.+++.++.+|..+.+..+||+.
T Consensus       507 dka~~~ykeal~ndasc~ealfniglt~e~~~--~ldeald~f~klh~i----l~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTEALFNIGLTAEALG--NLDEALDCFLKLHAI----LLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc--CHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            45666677777778888999999999999988  999999999887777    678899999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +.++..+-|+++..+..+|..|-
T Consensus       581 ~~q~~slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  581 LMQANSLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHhcccCCCCHHHHHHHHHHhh
Confidence            99999999999999998888764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.15  E-value=3.6e-05  Score=58.65  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             hhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHHH
Q 033440           15 SEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVNL   82 (119)
Q Consensus        15 ~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~   82 (119)
                      ++...+..+..+        .|..+......|..|...+  +|.+|+..|.+|+.+..    ..+|.-+.++.|+|..|.
T Consensus       217 ~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~  294 (508)
T KOG1840|consen  217 KAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY  294 (508)
T ss_pred             HHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            445555555555        6777777778999999998  99999999999998743    347788899999999999


Q ss_pred             HhcCHHHHHHHHHHHHhhC
Q 033440           83 LLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l~  101 (119)
                      +.|+|++|..+|.+|+++-
T Consensus       295 ~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  295 KQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             ccCChHHHHHHHHHHHHHH
Confidence            9999999999999999873

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.2e-05  Score=55.60  Aligned_cols=80  Identities=14%  Similarity=0.044  Sum_probs=75.3

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .++..+.+++.++|.-+.-+.+.+.++++..  +|+.+...-.+++++    +|+....++-+|.+++....|.+||..+
T Consensus        28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~--~~~~v~~dcrralql----~~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   28 DAIDCYSRAICINPTVASYYTNRALCHLKLK--HWEPVEEDCRRALQL----DPNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hHHHHHHHHHhcCCCcchhhhhHHHHHHHhh--hhhhhhhhHHHHHhc----ChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            4667888999999999999999999999987  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhh
Q 033440           95 EEALKL  100 (119)
Q Consensus        95 ~~al~l  100 (119)
                      .++..+
T Consensus       102 qra~sl  107 (284)
T KOG4642|consen  102 QRAYSL  107 (284)
T ss_pred             HHHHHH
Confidence            999665

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.14  E-value=3e-05  Score=59.28  Aligned_cols=80  Identities=19%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      +++.+.-...++...|  ++++|++.+......    -.+...+.-.+|.+++++|++++|...|+..|+.+|+|..-|.
T Consensus         3 ~SE~lLY~~~il~e~g--~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~   76 (517)
T PF12569_consen    3 HSELLLYKNSILEEAG--DYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR   76 (517)
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            3556666777788888  999999999888777    7888999999999999999999999999999999999999888


Q ss_pred             HhhccC
Q 033440          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .+..+.
T Consensus        77 ~L~~~~   82 (517)
T PF12569_consen   77 GLEEAL   82 (517)
T ss_pred             HHHHHH
Confidence            876664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.12  E-value=1.6e-05  Score=42.58  Aligned_cols=40  Identities=23%  Similarity=0.171  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +.++.+|..++++|+|.+|...++.+|+++|+|..+.-.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3567799999999999999999999999999998876544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.11  E-value=4.8e-05  Score=56.33  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             HHHHHH-HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHH-HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           32 IELKEK-GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        32 ~~~~~~-g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ..++.+ +....+.|  +++.|..++.++.+.    +|++.... ...+..+...|++++|+..++++++.+|+++.++.
T Consensus       118 ~l~~llaA~aA~~~g--~~~~A~~~l~~A~~~----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~  191 (398)
T PRK10747        118 VVNYLLAAEAAQQRG--DEARANQHLERAAEL----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLR  191 (398)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            333344 44448877  899999999999888    77764333 34478888899999999999999999999998888


Q ss_pred             HhhccCc
Q 033440          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      .++.+|.
T Consensus       192 ll~~~~~  198 (398)
T PRK10747        192 LAEQAYI  198 (398)
T ss_pred             HHHHHHH
Confidence            8777664

>PRK10941 hypothetical protein; Provisional

Probab=98.09  E-value=6.4e-05  Score=53.08  Aligned_cols=77  Identities=13%  Similarity=0.133  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      .+-+.++=..+.+.+  +++.|+.+.+..+.+    .|+++.-+..||.+|.++|.+..|+.|++.-++..|+.+.+-.-
T Consensus       181 ~Rml~nLK~~~~~~~--~~~~AL~~~e~ll~l----~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        181 RKLLDTLKAALMEEK--QMELALRASEALLQF----DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHcC--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            344567777888988  999999999999999    99999999999999999999999999999999999999887765


Q ss_pred             hhc
Q 033440          111 CSG  113 (119)
Q Consensus       111 ~a~  113 (119)
                      +.+
T Consensus       255 k~q  257 (269)
T PRK10941        255 RAQ  257 (269)
T ss_pred             HHH
Confidence            544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.05  E-value=5.8e-05  Score=52.89  Aligned_cols=79  Identities=16%  Similarity=0.142  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN---VKVVIL  110 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~  110 (119)
                      +++.+..+++.|  +|..|...|..-|..-|. .+-.+.++|=+|.+++.+|+|++|...|..+.+-.|.+   +++++.
T Consensus       144 ~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDLYKSG--DYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            555555666655  566666666666655121 11233455556666666666666666666665554433   345555


Q ss_pred             hhccC
Q 033440          111 CSGSH  115 (119)
Q Consensus       111 ~a~~~  115 (119)
                      +|.+.
T Consensus       221 lg~~~  225 (262)
T COG1729         221 LGVSL  225 (262)
T ss_pred             HHHHH
Confidence            55543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=5e-05  Score=54.68  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=67.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHHhcCHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .++++..+.++.+.+|+..++-..+|.++...|  +|++|++.++.+++.    +|+. +.+.-.+..||..+|+.++.+
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g--~y~~AV~~~e~v~eQ----n~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELAKG--DYQKAVEALERVLEQ----NPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHhcc--chHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            456677788888888888888888888888877  888888888888888    7654 345666778888888888888


Q ss_pred             HHHHHHHhhCCC
Q 033440           92 TDAEEALKLCPT  103 (119)
Q Consensus        92 ~~~~~al~l~p~  103 (119)
                      .-++++.+..++
T Consensus       270 ~fL~~~~~~~~g  281 (389)
T COG2956         270 NFLRRAMETNTG  281 (389)
T ss_pred             HHHHHHHHccCC
Confidence            888888877654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.03  E-value=9.2e-05  Score=50.03  Aligned_cols=90  Identities=19%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             hhhHHhHHHHHHhcH---HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC----
Q 033440           14 ESEKADLDAIAALKE---SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN----   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~----   86 (119)
                      .+++..++.+....|   --..+...+|..+++.|  +|..|+..+++.+..-|. +|..+.+++.+|.+++.+.+    
T Consensus        22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~--~y~~A~~~~~~fi~~yP~-~~~~~~A~Y~~g~~~~~~~~~~~~   98 (203)
T PF13525_consen   22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG--DYEEAIAAYERFIKLYPN-SPKADYALYMLGLSYYKQIPGILR   98 (203)
T ss_dssp             HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCC-CcchhhHHHHHHHHHHHhCccchh
Confidence            356677777776654   36778889999999999  999999999999999555 45566789999999877643    


Q ss_pred             -------HHHHHHHHHHHHhhCCCCHH
Q 033440           87 -------YRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        87 -------~~~A~~~~~~al~l~p~~~~  106 (119)
                             ..+|+..++..++.-|++..
T Consensus        99 ~~~D~~~~~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen   99 SDRDQTSTRKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred             cccChHHHHHHHHHHHHHHHHCcCchH
Confidence                   45899999999999998753

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.03  E-value=2.2e-05  Score=52.04  Aligned_cols=65  Identities=18%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----------NYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----------~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      -|+.|.+.++.....    +|.++..+++-|.+++.+.          -+++|++=++++|.++|+...+++.+|.+|.
T Consensus         6 ~FE~ark~aea~y~~----nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    6 FFEHARKKAEAAYAK----NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh----CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            578899999999999    9999999999999988863          3678899999999999999999999999875

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=5.2e-05  Score=54.09  Aligned_cols=89  Identities=18%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH-HHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY-RRAF   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~-~~A~   91 (119)
                      ..++.-.++.+....+..+..+..++.+++..|  +|++|...+.+++..    +|.++.++.|+..|...+|+. +.+-
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~--~~~eAe~~L~~al~~----~~~~~d~LaNliv~~~~~gk~~~~~~  256 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG--HYEEAEELLEEALEK----DPNDPDTLANLIVCSLHLGKPTEAAE  256 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT---HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhCCChhHHH
Confidence            345666777776666778889999999999999  999999999999999    999999999999999999998 5566


Q ss_pred             HHHHHHHhhCCCCHHH
Q 033440           92 TDAEEALKLCPTNVKV  107 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a  107 (119)
                      +...++...+|+++..
T Consensus       257 ~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  257 RYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHhCCCChHH
Confidence            7788888899988754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.00  E-value=6.9e-05  Score=57.37  Aligned_cols=69  Identities=22%  Similarity=0.258  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      ...++-++..+-..|  ++++|+.+.+++|+.    .|..+.+|+..|.++-+.|++.+|....+.+..+|+.+.
T Consensus       194 lw~~~~lAqhyd~~g--~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR  262 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLG--DYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR  262 (517)
T ss_pred             HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence            456678899999999  999999999999999    999999999999999999999999999999999998654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.0001  Score=51.45  Aligned_cols=73  Identities=22%  Similarity=0.242  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ....+.+...++...|  +|-++++..+..+..    +|.+..+|+.||.++....+..+|..++.++|+++|.-..+-
T Consensus       229 ~tpLllNy~QC~L~~~--e~yevleh~seiL~~----~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  229 ITPLLLNYCQCLLKKE--EYYEVLEHCSEILRH----HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             hhHHHHhHHHHHhhHH--HHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            3445667788899988  999999999999999    999999999999999999999999999999999999755443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.99  E-value=3.6e-05  Score=58.65  Aligned_cols=91  Identities=18%  Similarity=0.080  Sum_probs=75.3

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...|........+|..|+.+|  +|+.|+..+.+++++...    .+|.-.....+.|..|..+++|.+|+..|.+|+.+
T Consensus       193 ~~~P~~~~~~~~La~~y~~~g--~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  193 DEDPERLRTLRNLAEMYAVQG--RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cCCchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            457888888999999999998  999999999999987322    25666666677999999999999999999999986


Q ss_pred             --------CCCCHHHHHHhhccCcC
Q 033440          101 --------CPTNVKVVILCSGSHPN  117 (119)
Q Consensus       101 --------~p~~~~a~~~~a~~~~~  117 (119)
                              +|....++.++|.+|..
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~  295 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYK  295 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhc
Confidence                    35556788888887754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.00011  Score=53.05  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             hhhHHhHHHHHHhc-----HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH
Q 033440           14 ESEKADLDAIAALK-----ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        14 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      +++++..+++.++.     -..+.-+-+++..+....  +++.|...+.+|+..    +|...-+-..+|.+....|+|+
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~--~~d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~  231 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS--DVDRARELLKKALQA----DKKCVRASIILGRVELAKGDYQ  231 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhh----CccceehhhhhhHHHHhccchH
Confidence            34555555554443     446677888999998877  999999999999999    9999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCH-HHHHHhhccC
Q 033440           89 RAFTDAEEALKLCPTNV-KVVILCSGSH  115 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~-~a~~~~a~~~  115 (119)
                      .|++.++.+++.||++. .+.-.+..||
T Consensus       232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y  259 (389)
T COG2956         232 KAVEALERVLEQNPEYLSEVLEMLYECY  259 (389)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            99999999999999874 4444444444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.97  E-value=4.4e-05  Score=58.95  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=84.5

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++-..+......++...-.|...|..+-...  +|.+|+.+|+.|+.+    +|+|..++..++..+..+++++-....
T Consensus        58 ~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK--~Y~eaiKcy~nAl~~----~~dN~qilrDlslLQ~QmRd~~~~~~t  131 (700)
T KOG1156|consen   58 EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK--KYDEAIKCYRNALKI----EKDNLQILRDLSLLQIQMRDYEGYLET  131 (700)
T ss_pred             HHHHHHHHHHhccCcccchhHHHHHHHHhhhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence            34445566666778888888999998887766  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      -.+.+.+.|.+...|+..+.++
T Consensus       132 r~~LLql~~~~ra~w~~~Avs~  153 (700)
T KOG1156|consen  132 RNQLLQLRPSQRASWIGFAVAQ  153 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHH
Confidence            9999999999998888877654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.97  E-value=1.6e-06  Score=62.43  Aligned_cols=84  Identities=23%  Similarity=0.200  Sum_probs=78.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+++.+..+++++|..+..+..++.++.+.+  .+..|++.+..++++    +|+...-|--++.+...+|+|++|.+
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~--kp~~airD~d~A~ei----n~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK--KPNAAIRDCDFAIEI----NPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeecc--CCchhhhhhhhhhcc----CcccccccchhhHHHHHhhchHHHHH
Confidence            556778888889999999999999999999998  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCC
Q 033440           93 DAEEALKLCP  102 (119)
Q Consensus        93 ~~~~al~l~p  102 (119)
                      +++.+++++-
T Consensus       204 dl~~a~kld~  213 (377)
T KOG1308|consen  204 DLALACKLDY  213 (377)
T ss_pred             HHHHHHhccc
Confidence            9999999874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.96  E-value=2.3e-05  Score=59.60  Aligned_cols=85  Identities=26%  Similarity=0.251  Sum_probs=77.3

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhCC
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---GNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---~~~~~A~~~~~~al~l~p  102 (119)
                      .-|..++.+...|+-.|-.+  .+..|+..|.+++..    .|....++.|++.++++.   |+--.|+.+|..+++++|
T Consensus       369 eL~e~ie~~~~egnd~ly~~--~~~~~i~~~s~a~q~----~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~  442 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYES--IVSGAISHYSRAIQY----VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP  442 (758)
T ss_pred             hchHHHHHHHhhccchhhhH--HHHHHHHHHHHHhhh----ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence            34778899999999999988  999999999999999    999999999999999985   467789999999999999


Q ss_pred             CCHHHHHHhhccCc
Q 033440          103 TNVKVVILCSGSHP  116 (119)
Q Consensus       103 ~~~~a~~~~a~~~~  116 (119)
                      ...++||+++.++.
T Consensus       443 s~~kah~~la~aL~  456 (758)
T KOG1310|consen  443 SIQKAHFRLARALN  456 (758)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.96  E-value=0.00015  Score=50.80  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+.+++=+|..++.+|  +|+.|...|..++.--|. .|.-|+.++.+|.|+..+|+-++|-..++++++--|+...+..
T Consensus       177 ~~nA~yWLGe~~y~qg--~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         177 TPNAYYWLGESLYAQG--DYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             cchhHHHHHHHHHhcc--cchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            4566777999999999  999999999999987555 6778899999999999999999999999999999999887766


Q ss_pred             Hhh
Q 033440          110 LCS  112 (119)
Q Consensus       110 ~~a  112 (119)
                      .+.
T Consensus       254 Ak~  256 (262)
T COG1729         254 AKV  256 (262)
T ss_pred             HHH
Confidence            543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.93  E-value=5.6e-05  Score=60.94  Aligned_cols=73  Identities=16%  Similarity=0.143  Sum_probs=64.1

Q ss_pred             HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +.......  +|++|++.-.++++.    +|+|..+++-+|.++..++. .++|-++|..+.+++|++.-||-.++..|.
T Consensus         9 Ak~al~nk--~YeealEqskkvLk~----dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye   82 (1238)
T KOG1127|consen    9 AKDALRNK--EYEEALEQSKKVLKE----DPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYE   82 (1238)
T ss_pred             HHHHHhhc--cHHHHHHHHHHHHhc----CCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence            34445554  899999999999999    99999999999999999998 999999999999999999999988887663

>smart00028 TPR Tetratricopeptide repeats

Probab=97.87  E-value=4.2e-05  Score=34.91  Aligned_cols=32  Identities=34%  Similarity=0.417  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      .++.++|.++..+|++++|+..++++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45677888888888888888888888888775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.86  E-value=4.7e-05  Score=36.00  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           73 LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +++++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            45677777777777777777777777777753

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.86  E-value=5.3e-05  Score=61.06  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=46.7

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      .+..++.+...+|++.+.|..+|.+|-..|  .|..|++.|+++..+    .|.+.-..+..+....-+|.|.+|+..+.
T Consensus       581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sG--ry~~AlKvF~kAs~L----rP~s~y~~fk~A~~ecd~GkYkeald~l~  654 (1238)
T KOG1127|consen  581 AVCEFQSALRTDPKDYNLWLGLGEAYPESG--RYSHALKVFTKASLL----RPLSKYGRFKEAVMECDNGKYKEALDALG  654 (1238)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHhcC--ceehHHHhhhhhHhc----CcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            444455555555666666666666666555  566666666666665    55555555555555555666666666555


Q ss_pred             HHHhhCC
Q 033440           96 EALKLCP  102 (119)
Q Consensus        96 ~al~l~p  102 (119)
                      +.+....
T Consensus       655 ~ii~~~s  661 (1238)
T KOG1127|consen  655 LIIYAFS  661 (1238)
T ss_pred             HHHHHHH
Confidence            5555433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.85  E-value=0.00072  Score=42.98  Aligned_cols=68  Identities=19%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ........+..++..+...|  ++++|+..+.+++..    +|.+-.++..+-.++..+|++.+|+..|++..+
T Consensus        57 l~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   57 LRELYLDALERLAEALLEAG--DYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34556777888888999988  999999999999999    999999999999999999999999999988643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.79  E-value=1.4e-05  Score=45.62  Aligned_cols=49  Identities=22%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC----CC---CHHHHHHhhccCc
Q 033440           68 SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC----PT---NVKVVILCSGSHP  116 (119)
Q Consensus        68 ~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~----p~---~~~a~~~~a~~~~  116 (119)
                      |+-+.++.++|.+|..+|+|++|+..+++++++.    ++   -..+++++|.++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   57 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY   57 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999999999762    22   3567788887764

...

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.77  E-value=0.0002  Score=51.57  Aligned_cols=79  Identities=15%  Similarity=0.165  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+......+....+.|  +.++|..+|+.|+.+    .|.++.++...|.....-++.-+|-.+|-++|.++|.|.+++.
T Consensus       115 EA~~Al~~A~~~~~~G--k~ekA~~lfeHAlal----aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDG--KLEKAMTLFEHALAL----APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HHHHHHHHHHHHHhcc--chHHHHHHHHHHHhc----CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            3444455566667778  899999999999999    9999999999999998889999999999999999999999999


Q ss_pred             Hhhcc
Q 033440          110 LCSGS  114 (119)
Q Consensus       110 ~~a~~  114 (119)
                      ++++-
T Consensus       189 nR~RT  193 (472)
T KOG3824|consen  189 NRART  193 (472)
T ss_pred             hhhcc
Confidence            88763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.76  E-value=0.00036  Score=56.44  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=67.2

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ++.+-......+.+-.+++.+|.+|-+.|  ++++|...|+++|++    +|.++.+..++|..|... +.++|+..+.+
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g--~~~ka~~~yer~L~~----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K  174 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLN--ENKKLKGVWERLVKA----DRDNPEIVKKLATSYEEE-DKEKAITYLKK  174 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            33444444445666689999999999999  999999999999999    999999999999999999 99999999999


Q ss_pred             HHhh
Q 033440           97 ALKL  100 (119)
Q Consensus        97 al~l  100 (119)
                      |+..
T Consensus       175 AV~~  178 (906)
T PRK14720        175 AIYR  178 (906)
T ss_pred             HHHH
Confidence            9875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.0003  Score=52.40  Aligned_cols=90  Identities=13%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ....++.+..+|.+..++.-+|+.+.+.+  ++++|+=.|+.|+.+    .|-+...|..+-.||+-.|++.||....+.
T Consensus       320 L~~~eK~I~~~~r~~~alilKG~lL~~~~--R~~~A~IaFR~Aq~L----ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~  393 (564)
T KOG1174|consen  320 LNFVEKCIDSEPRNHEALILKGRLLIALE--RHTQAVIAFRTAQML----APYRLEIYRGLFHSYLAQKRFKEANALANW  393 (564)
T ss_pred             HHHHHHHhccCcccchHHHhccHHHHhcc--chHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            33445555667777788888888888877  788888888888888    777777888888888888888888888888


Q ss_pred             HHhhCCCCHHHHHHhh
Q 033440           97 ALKLCPTNVKVVILCS  112 (119)
Q Consensus        97 al~l~p~~~~a~~~~a  112 (119)
                      +++.-|.+.+++-..|
T Consensus       394 ~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  394 TIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHhhcchhhhhhhc
Confidence            8777777777766664

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.75  E-value=0.00025  Score=55.35  Aligned_cols=89  Identities=13%  Similarity=-0.011  Sum_probs=45.5

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++..++..|+....|..+|.++-+++  +.+.|-+.|...+..    +|..+.++.-++..-.+.|+.-.|...+
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~--~ie~aR~aY~~G~k~----cP~~ipLWllLakleEk~~~~~rAR~il  742 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQME--NIEMAREAYLQGTKK----CPNSIPLWLLLAKLEEKDGQLVRARSIL  742 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHH--HHHHHHHHHHhcccc----CCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence            3444444444555555555555555555544  555555555555555    4444445555555555555555555555


Q ss_pred             HHHHhhCCCCHHHHH
Q 033440           95 EEALKLCPTNVKVVI  109 (119)
Q Consensus        95 ~~al~l~p~~~~a~~  109 (119)
                      .++.--+|.+...|+
T Consensus       743 drarlkNPk~~~lwl  757 (913)
T KOG0495|consen  743 DRARLKNPKNALLWL  757 (913)
T ss_pred             HHHHhcCCCcchhHH
Confidence            555555555544443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.0014  Score=46.25  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHH--HHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           31 AIELKEKGNEY--VKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        31 ~~~~~~~g~~~--~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      -..+.+++..+  +-.|+...+.|.-+|+..-+.    .|..+.+....+.|++.+|+|++|....+.+|.-++.++.++
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL  244 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL  244 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence            33444444443  444555788888889887776    677888889999999999999999999999999999998887


Q ss_pred             HHh
Q 033440          109 ILC  111 (119)
Q Consensus       109 ~~~  111 (119)
                      -++
T Consensus       245 ~Nl  247 (299)
T KOG3081|consen  245 ANL  247 (299)
T ss_pred             HHH
Confidence            765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.71  E-value=9.5e-05  Score=35.31  Aligned_cols=33  Identities=21%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE   69 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~   69 (119)
                      ++.+..+|.++...|  ++++|+..|++++++    +|+
T Consensus         1 a~~~~~lg~~y~~~~--~~~~A~~~~~~a~~~----~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLG--DYEEALEYFEKALEL----NPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTT--SHHHHHHHHHHHHHH----HTT
T ss_pred             CHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCC
Confidence            367899999999999  999999999999999    664

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.70  E-value=0.00036  Score=49.38  Aligned_cols=85  Identities=25%  Similarity=0.288  Sum_probs=62.2

Q ss_pred             hhHHhHHHHHHh------cHHHHHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440           15 SEKADLDAIAAL------KESAAIELKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        15 ~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~   85 (119)
                      .++..+.++..+      ...-+..+..+|..+... |  +++.|+..|.+|+++....  ...-..++.+.|.++.++|
T Consensus        92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~  169 (282)
T PF14938_consen   92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG  169 (282)
T ss_dssp             HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence            455556655544      233577888999999998 8  9999999999999873221  1223467788999999999


Q ss_pred             CHHHHHHHHHHHHhhC
Q 033440           86 NYRRAFTDAEEALKLC  101 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~  101 (119)
                      +|++|+..|.++....
T Consensus       170 ~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  170 RYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             -HHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999998753

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.70  E-value=0.00031  Score=53.24  Aligned_cols=94  Identities=19%  Similarity=0.157  Sum_probs=76.8

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ..+...+.++...+..|+.+--+...|..+...|  +.++|++.|++++.......+-....++.++.|+..+.+|++|.
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g--~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG--NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc--CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            3445667788888889999999999999999998  99999999999986422223345578899999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHH
Q 033440           92 TDAEEALKLCPTNVKVV  108 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~  108 (119)
                      ..+.+.++.+.. .++.
T Consensus       326 ~~f~~L~~~s~W-Ska~  341 (468)
T PF10300_consen  326 EYFLRLLKESKW-SKAF  341 (468)
T ss_pred             HHHHHHHhcccc-HHHH
Confidence            999999997754 3443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.69  E-value=3.1e-05  Score=37.56  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHH
Q 033440           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAI   53 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~   53 (119)
                      ++++++++|+++.+|..+|..+...|  ++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g--~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQG--DYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCc--CHHhhc
Confidence            56788999999999999999999999  999986

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.68  E-value=0.00054  Score=53.58  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=84.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+.+...+.++....|+ .+.|+.-++...-.+  +.++|+++++++|..    .|....+|..+|+++..+++.+.|..
T Consensus       634 ~eraR~llakar~~sgT-eRv~mKs~~~er~ld--~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  634 LERARDLLAKARSISGT-ERVWMKSANLERYLD--NVEEALRLLEEALKS----FPDFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             HHHHHHHHHHHhccCCc-chhhHHHhHHHHHhh--hHHHHHHHHHHHHHh----CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence            34566777777776665 788888888888878  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhcc
Q 033440           93 DAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      .|...++..|+.+..|..++.+
T Consensus       707 aY~~G~k~cP~~ipLWllLakl  728 (913)
T KOG0495|consen  707 AYLQGTKKCPNSIPLWLLLAKL  728 (913)
T ss_pred             HHHhccccCCCCchHHHHHHHH
Confidence            9999999999999999887754

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.67  E-value=0.00012  Score=35.82  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           74 YANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        74 ~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      +.++|.+|..+|+|++|+..|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555555555555555555553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.62  E-value=0.00016  Score=35.39  Aligned_cols=28  Identities=32%  Similarity=0.634  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      ++..+|+.+.+.|  +|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g--~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQG--DYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT---HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence            4778999999999  999999999997766

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.00014  Score=51.28  Aligned_cols=69  Identities=20%  Similarity=0.308  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ......+.+..+.-..  +|..|...|++.++.    +|.++.+.+|.|.|++-+|+..+|+.....++...|..
T Consensus       251 ~~~V~~n~a~i~lg~n--n~a~a~r~~~~i~~~----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQN--NFAEAHRFFTEILRM----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hHHHHhhhhhheeccc--chHHHHHHHhhcccc----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            3445556666666655  999999999999998    99999999999999999999999999999999999963

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.00011  Score=52.79  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ..+....+.|...++.|  +|++|+..|+.|++.    ..-++.+-++++.|+++.|+|..|+...++.++-
T Consensus       142 n~Ad~~in~gCllykeg--qyEaAvqkFqaAlqv----sGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEG--QYEAAVQKFQAALQV----SGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             Cccchhccchheeeccc--cHHHHHHHHHHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            46778889999999999  999999999999999    8889999999999999999999999998887653

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00047  Score=49.92  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+..|.+++.+.+-.|  +|-.|+....+++.+    +|.+..+++.-|.|++.++++.+|+.-|...+.++...-.
T Consensus       118 navLY~NRAAa~~~l~--NyRs~l~Dcs~al~~----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLG--NYRSALNDCSAALKL----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             HHHHHhhHHHHHHHHH--HHHHHHHHHHHHHhc----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            4556778888888888  999999999999999    9999999999999999999999999999999888755433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.55  E-value=0.00019  Score=49.61  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=53.9

Q ss_pred             HHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+.+  |.+.|.+.|.+++++    .|.+...++..|....+.|+++.|...|+++++++|.+
T Consensus         5 ~~~~~--D~~aaaely~qal~l----ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESG--DAEAAAELYNQALEL----APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccC--ChHHHHHHHHHHhhc----CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45566  999999999999999    99999999999999999999999999999999999965

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.48  E-value=0.0013  Score=48.32  Aligned_cols=79  Identities=19%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .-++.++.-.+..|+++..+..+|..+++++  .|.+|-..++.++..    .| +..-+..+|.++-.+|+..+|-...
T Consensus       312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~--~w~kA~~~leaAl~~----~~-s~~~~~~la~~~~~~g~~~~A~~~r  384 (400)
T COG3071         312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNK--LWGKASEALEAALKL----RP-SASDYAELADALDQLGEPEEAEQVR  384 (400)
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHhh--HHHHHHHHHHHHHhc----CC-ChhhHHHHHHHHHHcCChHHHHHHH
Confidence            4556777778889999999999999999988  999999999999998    55 5555788999999999999999999


Q ss_pred             HHHHhh
Q 033440           95 EEALKL  100 (119)
Q Consensus        95 ~~al~l  100 (119)
                      ++++.+
T Consensus       385 ~e~L~~  390 (400)
T COG3071         385 REALLL  390 (400)
T ss_pred             HHHHHH
Confidence            998853

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.44  E-value=0.0032  Score=39.94  Aligned_cols=81  Identities=20%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-----Cc--c-----------hHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-----DS--E-----------NSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-----~~--~-----------~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...|......|  +.+.++..+.+++.+-.+.     .+  +           ...+...++..+...|++++|+..++
T Consensus         9 ~~~~a~~~~~~~--~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    9 LVREARAAARAG--DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHTT---HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344466666777  8999999999999873221     11  1           11455666777888999999999999


Q ss_pred             HHHhhCCCCHHHHHHhhccCc
Q 033440           96 EALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++.++|.+..+|..+-.+|.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~  107 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALA  107 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHH
Confidence            999999999999888766653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.41  E-value=0.00012  Score=55.45  Aligned_cols=84  Identities=15%  Similarity=0.101  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHh-hc--------cC-----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAIN-QN--------VL-----SDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~-~~--------~~-----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ...|.++|.++++.|  .|..+..+|.+|+. .|        |.     .....-.+.||+|..|+..|++..|.+.+.+
T Consensus       283 cif~NNlGcIh~~~~--~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~  360 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLG--CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK  360 (696)
T ss_pred             heeecCcceEeeehh--hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence            445789999999999  99999999999995 21        00     1223457899999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHhhccCc
Q 033440           97 ALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        97 al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++..--.+|..|+++|.|.+
T Consensus       361 av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  361 AVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHHHhcCcHHHHHHHHHHH
Confidence            99999999999999998764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.38  E-value=0.00068  Score=31.81  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE   69 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~   69 (119)
                      ++++.+|.++.+.|  ++++|+..|++.+..    .|+
T Consensus         1 ~a~~~~a~~~~~~g--~~~~A~~~~~~~~~~----~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLG--DYDEAIEYFQRLIKR----YPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHC--HHHHHHHHHHHHHHH----STT
T ss_pred             CHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CcC
Confidence            36788999999998  999999999999999    775

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.32  E-value=0.0078  Score=38.42  Aligned_cols=78  Identities=12%  Similarity=0.069  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           31 AIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ....+++++++.+.. +.|-.+.+.+++..+..  . +| ..-...+.++..+.++|+|+.++.+++..|+.+|+|.++.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            556677777776543 12567788888888862  1 33 4456777899999999999999999999999999999886


Q ss_pred             HHh
Q 033440          109 ILC  111 (119)
Q Consensus       109 ~~~  111 (119)
                      -.+
T Consensus       109 ~Lk  111 (149)
T KOG3364|consen  109 ELK  111 (149)
T ss_pred             HHH
Confidence            544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.0052  Score=45.34  Aligned_cols=77  Identities=19%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhcc
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ..++..++.+.  .|++|++.|.+.+..    +|+...+-.++|.||.+++-|+-+-+...--|+.-|++.-+...++..
T Consensus       155 LSLAsvhYmR~--HYQeAIdvYkrvL~d----n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn  228 (557)
T KOG3785|consen  155 LSLASVHYMRM--HYQEAIDVYKRVLQD----NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN  228 (557)
T ss_pred             HhHHHHHHHHH--HHHHHHHHHHHHHhc----ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34455555545  799999999999999    999999999999999999999999999888899999998888777655


Q ss_pred             CcC
Q 033440          115 HPN  117 (119)
Q Consensus       115 ~~~  117 (119)
                      ++.
T Consensus       229 ~fR  231 (557)
T KOG3785|consen  229 LFR  231 (557)
T ss_pred             Hhh
Confidence            443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.29  E-value=0.0088  Score=38.21  Aligned_cols=77  Identities=25%  Similarity=0.341  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE-NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ........+..+...+  +++.++..+.+++..    .+. ....+..++.++...+.+.+|+..+.+++...|.....+
T Consensus       166 ~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  239 (291)
T COG0457         166 LAEALLALGALLEALG--RYEEALELLEKALKL----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL  239 (291)
T ss_pred             hHHHHHHhhhHHHHhc--CHHHHHHHHHHHHhh----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHH
Confidence            4445555555555655  677777777777766    555 466666677777777777777777777777766644444


Q ss_pred             HHhh
Q 033440          109 ILCS  112 (119)
Q Consensus       109 ~~~a  112 (119)
                      ...+
T Consensus       240 ~~~~  243 (291)
T COG0457         240 YNLA  243 (291)
T ss_pred             hhHH
Confidence            4443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.27  E-value=0.0058  Score=41.36  Aligned_cols=85  Identities=14%  Similarity=0.226  Sum_probs=66.0

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+-|+. .--..+|+.+-..|  ++.+|...|.+++.=+   ...++.....++.+++.++++..|...++++.+.+|..
T Consensus        84 ~~ApTv-qnr~rLa~al~elG--r~~EA~~hy~qalsG~---fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~  157 (251)
T COG4700          84 AIAPTV-QNRYRLANALAELG--RYHEAVPHYQQALSGI---FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             hhchhH-HHHHHHHHHHHHhh--hhhhhHHHHHHHhccc---cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence            344442 33457899999999  9999999999998631   56788889999999999999999999999999998853


Q ss_pred             --HHHHHHhhccC
Q 033440          105 --VKVVILCSGSH  115 (119)
Q Consensus       105 --~~a~~~~a~~~  115 (119)
                        +..++..|+.+
T Consensus       158 r~pd~~Ll~aR~l  170 (251)
T COG4700         158 RSPDGHLLFARTL  170 (251)
T ss_pred             CCCCchHHHHHHH
Confidence              44555444443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.24  E-value=0.0029  Score=37.57  Aligned_cols=59  Identities=27%  Similarity=0.428  Sum_probs=46.4

Q ss_pred             HHHhChhcHHHHHHHHHHHHhhccCCCc-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           41 YVKKGKKHYSDAIDCYTRAINQNVLSDS-----ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ..+.|  ||.+|++.+.+..........     ....+..++|.++...|++++|+..+++++++-
T Consensus         8 ~~~~~--dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSG--DYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcC--CHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            35566  999999998888876333222     234677889999999999999999999999874

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.23  E-value=0.0077  Score=35.65  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch--HHHHHHHHHHHHHhcCHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN--SVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ..+..+++....+|++..+.+.++..++..|  ++++|++.+-..+..    +++.  -.+.-.+-.++-.+|.-+.-+.
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g--~~e~Al~~Ll~~v~~----dr~~~~~~ar~~ll~~f~~lg~~~plv~   79 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAG--DYEEALDQLLELVRR----DRDYEDDAARKRLLDIFELLGPGDPLVS   79 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---HHHHHHHHHHHHCC-----TTCCCCHHHHHHHHHHHHH-TT-HHHH
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CccccccHHHHHHHHHHHHcCCCChHHH
Confidence            3566778888889999999999999999988  999999998888887    4432  3333444455555666444444


Q ss_pred             HHHH
Q 033440           93 DAEE   96 (119)
Q Consensus        93 ~~~~   96 (119)
                      .+++
T Consensus        80 ~~RR   83 (90)
T PF14561_consen   80 EYRR   83 (90)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.22  E-value=0.0034  Score=50.39  Aligned_cols=93  Identities=14%  Similarity=0.056  Sum_probs=75.6

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .++....+++.+..|+..-+..-.|-.+++.|  ..++|..+++..-..    .+++-..+..+-.||..+|++++|+..
T Consensus        26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~g--k~~ea~~~Le~~~~~----~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLG--KGDEALKLLEALYGL----KGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhc--CchhHHHHHhhhccC----CCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            35667778888888888888888899999999  889999777665555    666777788899999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhc
Q 033440           94 AEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~  113 (119)
                      |.+++..+|. .+..+.+-.
T Consensus       100 Ye~~~~~~P~-eell~~lFm  118 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFM  118 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHH
Confidence            9999999998 555444433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=97.21  E-value=0.0079  Score=34.70  Aligned_cols=69  Identities=16%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ..+....+.|..+++..  +.++|+..++++++..+. .|+...++-.+..+|...|+|.+++...-+=+++
T Consensus         4 ~~ak~~ie~GlkLY~~~--~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQN--ETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666788999999887  999999999999998433 3344455555666888999999999977665544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.00076  Score=49.56  Aligned_cols=60  Identities=30%  Similarity=0.384  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      +...|  .|.++|+.|  ||++|+..|+-+...    +.-+..+..++|.|++-+|.|.+|.+...++
T Consensus        58 ~~~lW--ia~C~fhLg--dY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   58 SLQLW--IAHCYFHLG--DYEEALNVYTFLMNK----DDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHH--HHHHHHhhc--cHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            34444  688999999  999999999999887    7778889999999999999999999877665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.0041  Score=45.49  Aligned_cols=95  Identities=13%  Similarity=0.029  Sum_probs=75.6

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      +....++++.-.|++..++..--..+|-+|  +...-...+++.+..   ++++.   .-++-..+.++...|-|.+|..
T Consensus       122 a~~~wdklL~d~PtDlla~kfsh~a~fy~G--~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk  196 (491)
T KOG2610|consen  122 AAIEWDKLLDDYPTDLLAVKFSHDAHFYNG--NQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYDDAEK  196 (491)
T ss_pred             HHHHHHHHHHhCchhhhhhhhhhhHHHhcc--chhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence            445667888888999999888888888888  777777777665543   34444   5556667889999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ..++++++||.+..+...++.++
T Consensus       197 ~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  197 QADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             HHHhhccCCCcchHHHHHHHHHH
Confidence            99999999999999988887765

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.0039  Score=48.81  Aligned_cols=80  Identities=14%  Similarity=0.081  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ....+++.+..+|+..  +|..+++.|...+..++..  +..-+....+++.||+++.+.+.|++++.+|=+.+|.++-.
T Consensus       353 iH~iLWn~A~~~F~~~--~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~  430 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKME--KYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC  430 (872)
T ss_pred             HHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence            4556888899999998  9999999999999875553  23456788999999999999999999999999999998765


Q ss_pred             HHHh
Q 033440          108 VILC  111 (119)
Q Consensus       108 ~~~~  111 (119)
                      .+..
T Consensus       431 q~~~  434 (872)
T KOG4814|consen  431 QLLM  434 (872)
T ss_pred             HHHH
Confidence            5544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.18  E-value=0.0037  Score=47.51  Aligned_cols=100  Identities=14%  Similarity=0.046  Sum_probs=71.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----------C---------cc--hH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----------D---------SE--NS   71 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----------~---------~~--~~   71 (119)
                      +.+.++...+++.++|+.+.++.-++.....    ...+|.++|.++++..+..          .         +.  -.
T Consensus       184 p~aRIkaA~eALei~pdCAdAYILLAEEeA~----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~  259 (539)
T PF04184_consen  184 PQARIKAAKEALEINPDCADAYILLAEEEAS----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV  259 (539)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccccccc----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence            3456677788889999999999888776553    3567777777777542110          0         01  13


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC--CHHHHHHhhccCc
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPT--NVKVVILCSGSHP  116 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~a~~~~  116 (119)
                      .+-..+|.|.-++|+.+||+..++..++..|.  +...++++..+++
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL  306 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL  306 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence            45567899999999999999999999998874  4557777766653

The molecular function of this protein is uncertain.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.00067  Score=53.52  Aligned_cols=89  Identities=29%  Similarity=0.335  Sum_probs=78.4

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhCCC
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL--LGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~--l~~~~~A~~~~~~al~l~p~  103 (119)
                      ..-..+......|+.+|+.+  ++..+.-.|..++.+.|..++.....+.+.+.|++.  +|+|.+++..|.-++...|.
T Consensus        48 v~l~ra~~~~~E~n~~~~K~--d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~  125 (748)
T KOG4151|consen   48 VFLSRALELKEEGNKLFQKR--DYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR  125 (748)
T ss_pred             HHHHHHHHHHhhhhHHhhhh--hhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch
Confidence            34456777889999999988  999999999999999887778889999999998886  57899999999999999999


Q ss_pred             CHHHHHHhhccCc
Q 033440          104 NVKVVILCSGSHP  116 (119)
Q Consensus       104 ~~~a~~~~a~~~~  116 (119)
                      ..++++.++.+|.
T Consensus       126 i~~~Ll~r~~~y~  138 (748)
T KOG4151|consen  126 ISKALLKRARKYE  138 (748)
T ss_pred             HHHHHhhhhhHHH
Confidence            9999999888774

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.15  E-value=0.0027  Score=49.38  Aligned_cols=91  Identities=20%  Similarity=0.134  Sum_probs=76.7

Q ss_pred             hhHHhHHHHHHhcHHH-HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           15 SEKADLDAIAALKESA-AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .+++.+..+....|.. -..+.++++...+.|  -...|-..+.+++.+    ....|..++..|..++.+.+...|++.
T Consensus       625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~--~~~da~~~l~q~l~~----~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  625 FAIACLQRALNLAPLQQDVPLVNLANLLIHYG--LHLDATKLLLQALAI----NSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             HHHHHHHHHhccChhhhcccHHHHHHHHHHhh--hhccHHHHHHHHHhh----cccCchHHHhcchhHHHHhhhHHHHHH
Confidence            4566677766666653 345788999999988  999999999999999    888889999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHh
Q 033440           94 AEEALKLCPTNVKVVILC  111 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~  111 (119)
                      ++.|++++|+++.....+
T Consensus       699 ~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSL  716 (886)
T ss_pred             HHHHHhcCCCChhhHHHH
Confidence            999999999987655443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.11  E-value=0.013  Score=38.37  Aligned_cols=84  Identities=19%  Similarity=0.107  Sum_probs=65.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++..-..++.+.-+.|..++.-.-.|..+..+|  +|.+|+..++...+.    .|..+.+-.-++.|+..+|++.=- .
T Consensus        26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~--~w~dA~rlLr~l~~~----~~~~p~~kALlA~CL~~~~D~~Wr-~   98 (160)
T PF09613_consen   26 PDDAEALLDALRVLRPEFPELDLFDGWLHIVRG--DWDDALRLLRELEER----APGFPYAKALLALCLYALGDPSWR-R   98 (160)
T ss_pred             hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC--CHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHcCChHHH-H
Confidence            344556678888889999999999999999988  999999999998777    788887777788898888875432 2


Q ss_pred             HHHHHHhhCCC
Q 033440           93 DAEEALKLCPT  103 (119)
Q Consensus        93 ~~~~al~l~p~  103 (119)
                      +..++++.+++
T Consensus        99 ~A~evle~~~d  109 (160)
T PF09613_consen   99 YADEVLESGAD  109 (160)
T ss_pred             HHHHHHhcCCC
Confidence            35667776653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.08  E-value=0.00072  Score=50.54  Aligned_cols=100  Identities=12%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             hHHhHHHHHHhc----HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc--CCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           16 EKADLDAIAALK----ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV--LSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        16 ~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .+..++++++.-    ...+..|.++||+||-.+  ||++|+++-..-|.+..  ...-..+..--|+|..+-.+|+|++
T Consensus        36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~--DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde  113 (639)
T KOG1130|consen   36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK--DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE  113 (639)
T ss_pred             hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh--hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence            344455554432    334566889999999998  99999998555443311  1123455667889999999999999


Q ss_pred             HHHHHHHHHhhCC------CCHHHHHHhhccCcC
Q 033440           90 AFTDAEEALKLCP------TNVKVVILCSGSHPN  117 (119)
Q Consensus        90 A~~~~~~al~l~p------~~~~a~~~~a~~~~~  117 (119)
                      |+..|.+-|.+..      .-..++|++|.+|-.
T Consensus       114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha  147 (639)
T KOG1130|consen  114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHA  147 (639)
T ss_pred             HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh
Confidence            9999998766532      245789999988843

>smart00028 TPR Tetratricopeptide repeats

Probab=97.08  E-value=0.0013  Score=29.51  Aligned_cols=29  Identities=34%  Similarity=0.683  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      ..+..+|..++..+  +++.|+..+++++..
T Consensus         2 ~~~~~~a~~~~~~~--~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLG--DYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHh--hHHHHHHHHHHHHcc
Confidence            46788999999998  999999999999998

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.07  E-value=0.00049  Score=51.40  Aligned_cols=69  Identities=19%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +.+++-++||.|+-.|  ||++||..-..-+++.....  ...--++.|+|.||..+|+++.|+++|.+.+.+
T Consensus       194 qGRa~GnLGNTyYlLG--df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLG--DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             hcchhcccCceeeeec--cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            4556778899999999  99999998777776621111  123358999999999999999999999997654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.04  E-value=0.0042  Score=36.76  Aligned_cols=50  Identities=16%  Similarity=0.145  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+..+++.++.    +|+++.+.+.+|.+++..|++++|+..+-.+++.++++
T Consensus         6 ~~~~al~~~~a~----~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    6 PDIAALEAALAA----NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             ccHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            346678889999    99999999999999999999999999999999998866

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.02  E-value=0.011  Score=37.71  Aligned_cols=71  Identities=28%  Similarity=0.310  Sum_probs=41.3

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH-HHHHhcCHHHHHHHHHHHHhhCC
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH-VNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~-~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      ..+.....+...|......+  ++..++..+..++..    .+.+.......+. ++...|++.+|+..+.+++..+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457          90 LLPNLAEALLNLGLLLEALG--KYEEALELLEKALAL----DPDPDLAEALLALGALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             hccchHHHHHHHHHHHHHHh--hHHHHHHHHHHHHcC----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            45555666666666666665  666666666666665    4443333333444 56666666666666666655554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.0082  Score=42.40  Aligned_cols=74  Identities=16%  Similarity=0.283  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      ...+=..+.+.+  +++.|+....+.+.+    +|+++.-..-+|.+|..+|.+.-|+++++.-++..|+.+.+-.-+.+
T Consensus       184 l~~lk~~~~~e~--~~~~al~~~~r~l~l----~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLREL--QWELALRVAERLLDL----NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhh--chHHHHHHHHHHHhh----CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            334455666666  899999999999999    99999999999999999999999999999999999998877665543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.92  E-value=0.0033  Score=30.91  Aligned_cols=29  Identities=31%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ..+.++|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46778888888888888888888888775

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.90  E-value=0.0088  Score=39.13  Aligned_cols=83  Identities=14%  Similarity=-0.007  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ......+.+........+  +.+.+...+...-.+    .|..+.+-.--|..++..|+|.+|+..++.+..-.|..+.+
T Consensus         7 ~~iv~gLie~~~~al~~~--~~~D~e~lL~ALrvL----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~   80 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLG--DPDDAEALLDALRVL----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYA   80 (160)
T ss_pred             HHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHH
Confidence            345677888888899988  999999999998889    99999999999999999999999999999999999988766


Q ss_pred             HHHhhccCc
Q 033440          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      --.++.|+.
T Consensus        81 kALlA~CL~   89 (160)
T PF09613_consen   81 KALLALCLY   89 (160)
T ss_pred             HHHHHHHHH
Confidence            555555553

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.89  E-value=0.036  Score=39.26  Aligned_cols=90  Identities=21%  Similarity=0.245  Sum_probs=65.1

Q ss_pred             ChhhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHH
Q 033440           13 TESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLL   83 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~   83 (119)
                      .+++++.+.++....      ......+...|..+.+.|  +|++|+..|++.+......   ...-...+...+.|++.
T Consensus       131 ~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~  208 (282)
T PF14938_consen  131 YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA  208 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            456666666665542      223555678899999998  9999999999998752211   11222466788999999


Q ss_pred             hcCHHHHHHHHHHHHhhCCCC
Q 033440           84 LGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .|++..|...+++....+|.+
T Consensus       209 ~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  209 MGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             TT-HHHHHHHHHHHGTTSTTS
T ss_pred             cCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999854

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.87  E-value=0.0055  Score=45.94  Aligned_cols=77  Identities=10%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             HHHHHHHhChhcHHHHHHHHHHHHhhccCC----C-----cchH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           37 KGNEYVKKGKKHYSDAIDCYTRAINQNVLS----D-----SENS-----VLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~-----~~~~-----~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      -|..+++++  +|..|...|.-+|++|.+.    .     +++.     -+--.+..||+++++++-|+.+.-+.+.++|
T Consensus       182 das~~yrqk--~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  182 DASSCYRQK--KYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHhhH--HHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            455566666  7888888888888876542    1     1221     2445678999999999999999999999999


Q ss_pred             CCHHHHHHhhccC
Q 033440          103 TNVKVVILCSGSH  115 (119)
Q Consensus       103 ~~~~a~~~~a~~~  115 (119)
                      .+...|++.|-|+
T Consensus       260 ~~frnHLrqAavf  272 (569)
T PF15015_consen  260 SYFRNHLRQAAVF  272 (569)
T ss_pred             chhhHHHHHHHHH
Confidence            9999998887654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.0045  Score=47.85  Aligned_cols=65  Identities=18%  Similarity=0.108  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ++.+-++++.+  ..++|+..++   ..    ++.+..+..-+|++++++|+|++|+..|+..++.+.+.....
T Consensus        83 fEKAYc~Yrln--k~Dealk~~~---~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~  147 (652)
T KOG2376|consen   83 FEKAYCEYRLN--KLDEALKTLK---GL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE  147 (652)
T ss_pred             HHHHHHHHHcc--cHHHHHHHHh---cc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence            35555555555  5555555554   22    444555556677777777777777777777776665544443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.0069  Score=43.02  Aligned_cols=97  Identities=14%  Similarity=0.068  Sum_probs=73.8

Q ss_pred             HHhHHHHHHhc-HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           17 KADLDAIAALK-ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        17 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++.+..+++.+ |.++.....+|...++-|  |-+.|..+++..-...-.  .-..+-.++.|.+.+|...++|.+|...
T Consensus       197 ~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~  274 (366)
T KOG2796|consen  197 VDAYHSVIKYYPEQEPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF  274 (366)
T ss_pred             HHHHHHHHHhCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence            34555565666 667777888999999999  988888877743321000  0245667888899999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.+.++.||.++.+-.++|.|+
T Consensus       275 ~~~i~~~D~~~~~a~NnKALcl  296 (366)
T KOG2796|consen  275 FTEILRMDPRNAVANNNKALCL  296 (366)
T ss_pred             HhhccccCCCchhhhchHHHHH
Confidence            9999999999998888887765

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.0045  Score=44.71  Aligned_cols=74  Identities=18%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+..-...+|..-..+.-+|-+|+...  +|..|..+|++.-..    .|......+.-+..+++.+.|.+|+.......
T Consensus        32 ~l~s~~Er~p~~rAgLSlLgyCYY~~Q--~f~~AA~CYeQL~ql----~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   32 LLGSELERSPRSRAGLSLLGYCYYRLQ--EFALAAECYEQLGQL----HPELEQYRLYQAQSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhh----ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence            333344455666666667777777766  677777777776666    66666666666667777777777766555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.023  Score=44.09  Aligned_cols=93  Identities=13%  Similarity=0.093  Sum_probs=67.4

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      -++..+...+++...|++..+++-.-.++.+.+  .|+.|+.....-...    . .....++..+.|.++++..++|+.
T Consensus        28 ~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~--ky~~ALk~ikk~~~~----~-~~~~~~fEKAYc~Yrlnk~Dealk  100 (652)
T KOG2376|consen   28 YEEAVKTANKILSIVPDDEDAIRCKVVALIQLD--KYEDALKLIKKNGAL----L-VINSFFFEKAYCEYRLNKLDEALK  100 (652)
T ss_pred             HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh--HHHHHHHHHHhcchh----h-hcchhhHHHHHHHHHcccHHHHHH
Confidence            345666777788888999999999999999998  999999554433322    1 222333789999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .+.   .+++........+|+++
T Consensus       101 ~~~---~~~~~~~~ll~L~AQvl  120 (652)
T KOG2376|consen  101 TLK---GLDRLDDKLLELRAQVL  120 (652)
T ss_pred             HHh---cccccchHHHHHHHHHH
Confidence            988   45555555554444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.71  E-value=0.028  Score=37.34  Aligned_cols=71  Identities=24%  Similarity=0.367  Sum_probs=57.9

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +.+.-+++..+|..|.+.|  |.+.|++.|.++.+.+.. ......++.++-.+.+..++|..+.....++-.+
T Consensus        32 kesir~~~~~l~~~~~~~G--d~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIG--DLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4556788999999999999  999999999999987433 2345567777778888899999999998888664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.69  E-value=0.014  Score=35.86  Aligned_cols=72  Identities=15%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             HHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhhCC
Q 033440           37 KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLG-----------NYRRAFTDAEEALKLCP  102 (119)
Q Consensus        37 ~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~-----------~~~~A~~~~~~al~l~p  102 (119)
                      ++..++.+|  |+-+|+++.+..+..    .+++.   .++..-|.++..+.           -..-+++.++++..+.|
T Consensus         2 ~A~~~~~rG--nhiKAL~iied~i~~----h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARG--NHIKALEIIEDLISR----HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHHHcc--CHHHHHHHHHHHHHH----ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence            466788988  999999999999987    44433   67777788776643           24568899999999999


Q ss_pred             CCHHHHHHhhcc
Q 033440          103 TNVKVVILCSGS  114 (119)
Q Consensus       103 ~~~~a~~~~a~~  114 (119)
                      +....+|.+|.-
T Consensus        76 ~~A~~L~~la~~   87 (111)
T PF04781_consen   76 DSAHSLFELASQ   87 (111)
T ss_pred             hHHHHHHHHHHH
Confidence            998888888753

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.67  E-value=0.0063  Score=29.87  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhc
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN   63 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~   63 (119)
                      +.++.++|..+...|  ++++|+.++.+++++.
T Consensus         2 a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQG--RYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh--hcchhhHHHHHHHHHH
Confidence            467889999999999  9999999999999873

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.017  Score=40.94  Aligned_cols=73  Identities=16%  Similarity=0.184  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhCCCCHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA-EEALKLCPTNVK  106 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~-~~al~l~p~~~~  106 (119)
                      +..+..+..+++++...|  +|++|......++..    ++.++..+.|+-.|-..+|...++...+ .+....+|.++.
T Consensus       204 ~~T~~llnG~Av~~l~~~--~~eeAe~lL~eaL~k----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  204 PPTPLLLNGQAVCHLQLG--RYEEAESLLEEALDK----DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             CCChHHHccHHHHHHHhc--CHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            345677888999999999  999999999999999    9999999999999999999988887754 455556777653

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.57  E-value=0.038  Score=42.26  Aligned_cols=88  Identities=11%  Similarity=-0.003  Sum_probs=71.5

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-HHHHHHHHH
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRAFTDAE   95 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~~~~   95 (119)
                      ...+..+....+.+...|..-....-+.+  .+.+--..|.+++..    +|+++.++...|.-.+..+. .+.|...+.
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~--~~~~v~ki~~~~l~~----Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKK--TYGEVKKIFAAMLAK----HPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhc--chhHHHHHHHHHHHh----CCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            34455666666667777776666555554  788989999999999    99999999999998888776 999999999


Q ss_pred             HHHhhCCCCHHHHHH
Q 033440           96 EALKLCPTNVKVVIL  110 (119)
Q Consensus        96 ~al~l~p~~~~a~~~  110 (119)
                      ++|+.+|+++..|..
T Consensus       165 rgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHhhcCCCChHHHHH
Confidence            999999999887643

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.55  E-value=0.0069  Score=30.07  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      .+|..+|.+-+..++|.+|+.++.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788899999999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.45  E-value=0.077  Score=33.35  Aligned_cols=68  Identities=18%  Similarity=0.245  Sum_probs=48.1

Q ss_pred             HHHHHHH--HHHHHHhChhcHHHHHHHHHHHHhhccCCCc--------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           31 AIELKEK--GNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--------ENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        31 ~~~~~~~--g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +.+|..+  |....+.|  -|++|...++++++...+..|        -++..|..++-++..+|+|++++....++|..
T Consensus         7 a~aY~aLs~ae~ql~~g--~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDG--AYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            3444433  44455666  999999999999987333222        25567888888999999999999999998863

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.40  E-value=0.059  Score=34.92  Aligned_cols=80  Identities=19%  Similarity=0.109  Sum_probs=54.4

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      .-..++.+.-+.|+.++.-.-.|..+...|  +|.+|+..++...+.    .+..+..---.+.|+.-+|+..=- .+..
T Consensus        29 ~e~lLdALrvLrP~~~e~d~~dg~l~i~rg--~w~eA~rvlr~l~~~----~~~~p~~kAL~A~CL~al~Dp~Wr-~~A~  101 (153)
T TIGR02561        29 AQAMLDALRVLRPNLKELDMFDGWLLIARG--NYDEAARILRELLSS----AGAPPYGKALLALCLNAKGDAEWH-VHAD  101 (153)
T ss_pred             HHHHHHHHHHhCCCccccchhHHHHHHHcC--CHHHHHHHHHhhhcc----CCCchHHHHHHHHHHHhcCChHHH-HHHH
Confidence            334566667778888888788888888877  888888888887776    556666666677788877775422 2244


Q ss_pred             HHHhhCC
Q 033440           96 EALKLCP  102 (119)
Q Consensus        96 ~al~l~p  102 (119)
                      +++.-++
T Consensus       102 ~~le~~~  108 (153)
T TIGR02561       102 EVLARDA  108 (153)
T ss_pred             HHHHhCC
Confidence            4555443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.24  E-value=0.063  Score=28.59  Aligned_cols=41  Identities=15%  Similarity=0.058  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .++.++..+++.|  +|+.|..+.+.+|+.    +|+|..+..-...
T Consensus         3 ~lY~lAig~ykl~--~Y~~A~~~~~~lL~~----eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    3 CLYYLAIGHYKLG--EYEKARRYCDALLEI----EPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHTT---HHHHHHHHHHHHHH----TTS-HHHHHHHHH
T ss_pred             hHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCcHHHHHHHHH
Confidence            4677889999999  999999999999999    9998876554433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.17  E-value=0.02  Score=42.37  Aligned_cols=48  Identities=21%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .|++|.+++.+|..+++.+.|.+|-.+++.+++..|+ ...+..+|.++
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~  371 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADAL  371 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHH
Confidence            8889999999999999999999999999999999874 33444444443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.11  E-value=0.035  Score=27.13  Aligned_cols=32  Identities=19%  Similarity=-0.060  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHH--HHHHHhhCCCC
Q 033440           73 LYANRAHVNLLLGNYRRAFTD--AEEALKLCPTN  104 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~--~~~al~l~p~~  104 (119)
                      .++..|.++...|++++|+..  ++-+..++|.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            345566777777777777777  44666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.05  E-value=0.097  Score=32.21  Aligned_cols=83  Identities=13%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             hhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhCh---------hcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAA---IELKEKGNEYVKKGK---------KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      ++++.++......+++.   ..+..+|.++++...         --.-.++++|.+++.+    .|..+..++.+|.-+-
T Consensus        14 KAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L----sp~~A~~L~~la~~l~   89 (111)
T PF04781_consen   14 KALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL----SPDSAHSLFELASQLG   89 (111)
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc----ChhHHHHHHHHHHHhh
Confidence            45555555555544433   667777888865442         0234688999999999    9999999999998877


Q ss_pred             HhcCHHHHHHHHHHHHhhC
Q 033440           83 LLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l~  101 (119)
                      ...-|++++.-++++|.+.
T Consensus        90 s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   90 SVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             hHHHHHHHHHHHHHHhccc
Confidence            7788999999999998853

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.082  Score=39.48  Aligned_cols=100  Identities=10%  Similarity=0.009  Sum_probs=82.6

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC----H
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN----Y   87 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~----~   87 (119)
                      ..+.++..+..+...+|+.--+|..+-..+.+++-.+|..=+...+++++.    +|.+..++..|=.+.-....    .
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~----D~RNfh~W~YRRfV~~~~~~~~~~~  165 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ----DPRNFHAWHYRRFVVEQAERSRNLE  165 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc----CcccccchHHHHHHHHHHhcccccc
Confidence            456777888889999999999999999999987754578889999999999    88888777777666554432    5


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           88 RRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .+-+..+.+++.-++.|..+|..+..++
T Consensus       166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  166 KEELEFTTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             hhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence            7788899999999999999998887654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.01  E-value=0.13  Score=32.34  Aligned_cols=68  Identities=16%  Similarity=0.040  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC---CCc----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL---SDS----ENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~---~~~----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ++-.+..+...+...|  +|++++.....+|...-+   -+.    ....+.++++.++..+|+.++|+..++.+.+
T Consensus        54 DA~chA~Ls~A~~~Lg--ry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLG--RYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4455666777888888  999999888888854110   022    3456778999999999999999999999865

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.99  E-value=0.047  Score=38.74  Aligned_cols=85  Identities=11%  Similarity=0.019  Sum_probs=60.5

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+...+.++.+..+.....|...|..-++.++ +.+.|...|+.++..    .|.+..++......+..+++.+.|...+
T Consensus        19 ~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-d~~~A~~Ife~glk~----f~~~~~~~~~Y~~~l~~~~d~~~aR~lf   93 (280)
T PF05843_consen   19 AARKVFKRARKDKRCTYHVYVAYALMEYYCNK-DPKRARKIFERGLKK----FPSDPDFWLEYLDFLIKLNDINNARALF   93 (280)
T ss_dssp             HHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34455666654444456777777777666432 777799999999988    8888888888888888889999999999


Q ss_pred             HHHHhhCCCC
Q 033440           95 EEALKLCPTN  104 (119)
Q Consensus        95 ~~al~l~p~~  104 (119)
                      ++++..-|..
T Consensus        94 er~i~~l~~~  103 (280)
T PF05843_consen   94 ERAISSLPKE  103 (280)
T ss_dssp             HHHCCTSSCH
T ss_pred             HHHHHhcCch
Confidence            9988765543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.98  E-value=0.34  Score=35.11  Aligned_cols=91  Identities=11%  Similarity=-0.034  Sum_probs=70.8

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhC----------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      ...+.+....+|.+..+|.++...--..-          +.-.+.-+.+|++||+.    +|++..++..+=.+..+...
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~----np~~~~L~l~~l~~~~~~~~   80 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH----NPDSERLLLGYLEEGEKVWD   80 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCC
Confidence            45567777889999999987765432221          01245667889999999    99999888888788888899


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           87 YRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .++...-.++++..+|++...|...
T Consensus        81 ~~~l~~~we~~l~~~~~~~~LW~~y  105 (321)
T PF08424_consen   81 SEKLAKKWEELLFKNPGSPELWREY  105 (321)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHH
Confidence            9999999999999999998877543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.068  Score=37.96  Aligned_cols=88  Identities=17%  Similarity=0.114  Sum_probs=41.1

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHH-HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYS-DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++.++.+...+|++-..|..+-.+.-..|  ++. .-++.....|..    +..+..++..|-.|....+.|++-+..+
T Consensus        97 El~~l~eI~e~npKNYQvWHHRr~ive~l~--d~s~rELef~~~~l~~----DaKNYHaWshRqW~~r~F~~~~~EL~y~  170 (318)
T KOG0530|consen   97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLG--DPSFRELEFTKLMLDD----DAKNYHAWSHRQWVLRFFKDYEDELAYA  170 (318)
T ss_pred             HHHHHHHHHHhCccchhHHHHHHHHHHHhc--CcccchHHHHHHHHhc----cccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence            333444444444444444444444444444  444 334444444444    4444455555555555555555555555


Q ss_pred             HHHHhhCCCCHHHHH
Q 033440           95 EEALKLCPTNVKVVI  109 (119)
Q Consensus        95 ~~al~l~p~~~~a~~  109 (119)
                      .+.|+.|-.|-.||.
T Consensus       171 ~~Lle~Di~NNSAWN  185 (318)
T KOG0530|consen  171 DELLEEDIRNNSAWN  185 (318)
T ss_pred             HHHHHHhhhccchhh
Confidence            555555544444443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.84  E-value=0.28  Score=33.65  Aligned_cols=82  Identities=16%  Similarity=0.082  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHhChhc-------HHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           29 SAAIELKEKGNEYVKKGKKH-------YSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~-------~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ..+..+..+++.+-..|  +       ...|+..|.++++....  ..-+...+.+-+|....++|++++|+..+++++.
T Consensus       116 ~~A~l~LrlAWlyR~~~--~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLG--DEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            45667777777777666  5       45566666666665221  1224567888899999999999999999999998


Q ss_pred             hCCCCH-HHHHHhh
Q 033440          100 LCPTNV-KVVILCS  112 (119)
Q Consensus       100 l~p~~~-~a~~~~a  112 (119)
                      ..-.+. .....+|
T Consensus       194 ~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  194 SKKASKEPKLKDMA  207 (214)
T ss_pred             CCCCCCcHHHHHHH
Confidence            654333 3444444

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.67  E-value=0.02  Score=41.63  Aligned_cols=79  Identities=11%  Similarity=0.079  Sum_probs=65.9

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN-RAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+.++..|..-++-..+.+  .|.+--..|.+++..    +|.++++|.. .+.-+...++++-+...+.++++.+|++
T Consensus       102 kff~D~k~w~~y~~Y~~k~k--~y~~~~nI~~~~l~k----hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKK--MYGEMKNIFAECLTK----HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc----CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            35666777777777667765  888888999999999    9999999987 4556778899999999999999999999


Q ss_pred             HHHHHH
Q 033440          105 VKVVIL  110 (119)
Q Consensus       105 ~~a~~~  110 (119)
                      +..|+.
T Consensus       176 p~iw~e  181 (435)
T COG5191         176 PRIWIE  181 (435)
T ss_pred             chHHHH
Confidence            887753

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.65  E-value=0.12  Score=35.03  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=40.0

Q ss_pred             HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440           36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      .++.+.++.|  .+++|+..++...+     +...+...--+|.++...|+-.+|...|.+++..+++.+
T Consensus       131 RLArvq~q~~--k~D~AL~~L~t~~~-----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         131 RLARVQLQQK--KADAALKTLDTIKE-----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHhh--hHHHHHHHHhcccc-----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            3444444444  45555444333221     233445566789999999999999999999999875543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.61  E-value=0.055  Score=42.92  Aligned_cols=60  Identities=8%  Similarity=-0.149  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .|..+...+...|  +++.|...+++.+++    .|++...|..++.+|.+.|++++|.+.+++..
T Consensus       496 ~~~~Ll~a~~~~g--~~~~a~~~~~~l~~~----~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        496 MWAALLTACRIHK--NLELGRLAAEKLYGM----GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             HHHHHHHHHHHcC--CcHHHHHHHHHHhCC----CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3444444444444  455555555555444    45444445555555555555555555554443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.59  E-value=0.22  Score=35.01  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             hhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh-------
Q 033440           15 SEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-------   84 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-------   84 (119)
                      +++..++++....|-   .-.+...++-.+++.+  +|+.|+...++-+.+-|+ +|+-.-+++-+|.+++..       
T Consensus        52 ~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--~y~~A~~~~drFi~lyP~-~~n~dY~~YlkgLs~~~~i~~~~rD  128 (254)
T COG4105          52 EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--EYDLALAYIDRFIRLYPT-HPNADYAYYLKGLSYFFQIDDVTRD  128 (254)
T ss_pred             HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhccCCccccC
Confidence            344555555555433   4566778899999988  999999999999999666 566777888899998763       


Q ss_pred             -cCHHHHHHHHHHHHhhCCCCH
Q 033440           85 -GNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        85 -~~~~~A~~~~~~al~l~p~~~  105 (119)
                       ..-.+|+..+..++.-=|++.
T Consensus       129 q~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         129 QSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCc
Confidence             235678889999999888764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.58  E-value=0.064  Score=34.79  Aligned_cols=82  Identities=15%  Similarity=-0.089  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ......+.+........+  +++.+.......-.+    -|+.+.+-.--|..++..|+|.+|+..++.+.+-.+..+.+
T Consensus         7 ~~iv~gLi~~~~~aL~~~--d~~D~e~lLdALrvL----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~   80 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSA--DPYDAQAMLDALRVL----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG   80 (153)
T ss_pred             HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH
Confidence            334556666666677778  999999999888888    89999999989999999999999999999999988877655


Q ss_pred             HHHhhccC
Q 033440          108 VILCSGSH  115 (119)
Q Consensus       108 ~~~~a~~~  115 (119)
                      --.++.|+
T Consensus        81 kAL~A~CL   88 (153)
T TIGR02561        81 KALLALCL   88 (153)
T ss_pred             HHHHHHHH
Confidence            44444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.48  E-value=0.06  Score=36.58  Aligned_cols=60  Identities=22%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      +.++....+|..|.+.   |.++++..+.+++++....+.-++.++..++.++.++|+++.|-
T Consensus       139 ~t~elq~aLAtyY~kr---D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYTKR---DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4577777888877753   79999999999999855544567899999999999999998873

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=95.48  E-value=0.052  Score=40.61  Aligned_cols=61  Identities=16%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             HHHHHHHHhChhcHHHHHHHHHHHHhh-----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           36 EKGNEYVKKGKKHYSDAIDCYTRAINQ-----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+...+.-.|  ||..|+...+- |++     ...+.+-....++..|.||+.+++|.+|+..+..+|-
T Consensus       127 gLlRvh~LLG--DY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLG--DYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhcc--CHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667778  99999987543 333     1123455678899999999999999999999999765

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.32  Score=34.63  Aligned_cols=95  Identities=12%  Similarity=0.053  Sum_probs=72.7

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH-HH
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR-RA   90 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~-~A   90 (119)
                      .++.++...+.++.++|.+-..|.-+-.++-..+. +..+-++..+..++-    .|.|..++..|-.+...+|++. .-
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-dL~~El~~l~eI~e~----npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-DLNKELEYLDEIIED----NPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHhcCcccch
Confidence            45677777888888888888887777776655543 677778888888887    8888888888888888888877 77


Q ss_pred             HHHHHHHHhhCCCCHHHHHHh
Q 033440           91 FTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ++.++.++..+..|..+|--+
T Consensus       133 Lef~~~~l~~DaKNYHaWshR  153 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHR  153 (318)
T ss_pred             HHHHHHHHhccccchhhhHHH
Confidence            888888888887777776443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.44  E-value=0.064  Score=37.36  Aligned_cols=46  Identities=22%  Similarity=0.117  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           52 AIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        52 A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      |..+|.+|+.+    .|.+...|+.+|.+....|+.-+|+-.|-+++-..
T Consensus         1 A~~~Y~~A~~l----~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~   46 (278)
T PF10373_consen    1 AERYYRKAIRL----LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR   46 (278)
T ss_dssp             HHHHHHHHHHH-----TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHh----CCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence            34455555555    55555555555555555555555555555554433

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.39  Score=33.72  Aligned_cols=89  Identities=18%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             hhhHHhHHHHHHhcHHHHHH------HHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHh
Q 033440           14 ESEKADLDAIAALKESAAIE------LKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l   84 (119)
                      .+++..++.++.+..+..+-      +..+|..|-.. .  ++++||.+|+++-+.-..  +...--..+...+..-..+
T Consensus        90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~--d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l  167 (288)
T KOG1586|consen   90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQ--DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL  167 (288)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHH--HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence            34555666666655443332      33667777665 5  899999999999876111  0111223445555555678


Q ss_pred             cCHHHHHHHHHHHHhhCCCC
Q 033440           85 GNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~  104 (119)
                      ++|.+||..|+++.+..-+|
T Consensus       168 eqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  168 EQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHhccc
Confidence            99999999999988865544

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=95.40  E-value=0.12  Score=33.16  Aligned_cols=52  Identities=19%  Similarity=0.174  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      .+.....+...+..|  +|.-|+.+.+.++..    +|++..+..-++.++..+|.-.
T Consensus        70 ~d~vl~~A~~~~~~g--d~~wA~~L~d~l~~a----dp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   70 ADKVLERAQAALAAG--DYQWAAELLDHLVFA----DPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHHCT---HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHHHhc
Confidence            566778888899988  999999999999999    9999999999999988876433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.39  E-value=0.18  Score=38.47  Aligned_cols=65  Identities=15%  Similarity=0.084  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc-hHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE-NSVLYANRAHVNLLLGNY-------RRAFTDAEEALKL  100 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~a~~~~~l~~~-------~~A~~~~~~al~l  100 (119)
                      ....++++|..++-.+  +|++|...+.+.++.    ..+ ...+.+..|.|+..+++.       ++|...+.++-.+
T Consensus       304 ~~l~~~El~w~~~~~~--~w~~A~~~f~~L~~~----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  304 HHLCYFELAWCHMFQH--DWEEAAEYFLRLLKE----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHHHHHHHHHc--hHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            4566889999999998  999999999999988    554 455667788899999999       8888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.39  E-value=0.27  Score=41.27  Aligned_cols=11  Identities=18%  Similarity=0.286  Sum_probs=4.2

Q ss_pred             cHHHHHHHHHH
Q 033440           48 HYSDAIDCYTR   58 (119)
Q Consensus        48 ~~~~A~~~~~~   58 (119)
                      ++++|.+.|.+
T Consensus       594 ~ldeA~elf~~  604 (1060)
T PLN03218        594 QVDRAKEVYQM  604 (1060)
T ss_pred             CHHHHHHHHHH
Confidence            33333333333

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.31  E-value=0.16  Score=39.50  Aligned_cols=84  Identities=12%  Similarity=-0.001  Sum_probs=66.0

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      .++..+.+....-|.....+-+.+..+++++ +++.-.|++....|+++    +|....+++.++.++..++++.+|+++
T Consensus       392 ~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl----n~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  392 GAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL----NPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC----ChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            3445556666666777777888888887753 13667889999999999    999999999999999999999999996


Q ss_pred             HHHHHhhCC
Q 033440           94 AEEALKLCP  102 (119)
Q Consensus        94 ~~~al~l~p  102 (119)
                      ..-+.-..|
T Consensus       468 ~~alq~~~P  476 (758)
T KOG1310|consen  468 HWALQMSFP  476 (758)
T ss_pred             HHHHhhcCc
Confidence            655555555

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.23  E-value=0.11  Score=41.13  Aligned_cols=69  Identities=10%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      +.+...|..+...|.+.|  ++++|+..|.+....  ...| +...|..+..++.++|++++|.+.+..+++..
T Consensus       287 ~~~~vt~n~li~~y~~~g--~~~eA~~lf~~M~~~--g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        287 EKTTVAWNSMLAGYALHG--YSEEALCLYYEMRDS--GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             CCChhHHHHHHHHHHhCC--CHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            345667788888888877  888888888776543  1133 33445666666777777777777777666654

>PRK10941 hypothetical protein; Provisional

Probab=95.23  E-value=0.11  Score=36.92  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=52.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .+.+....+.+..+.|+++..+..+|..+.+.|  -+..|+..++.-|+.    +|+++.+-.-+..
T Consensus       197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~--c~~~A~~DL~~fl~~----~P~dp~a~~ik~q  257 (269)
T PRK10941        197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLD--CEHVALSDLSYFVEQ----CPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHh----CCCchhHHHHHHH
Confidence            346677788888999999999999999999999  999999999999999    7777776554433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.19  E-value=0.22  Score=33.88  Aligned_cols=74  Identities=12%  Similarity=0.034  Sum_probs=58.5

Q ss_pred             HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-hCCCCHHHHHHhhcc
Q 033440           36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK-LCPTNVKVVILCSGS  114 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~-l~p~~~~a~~~~a~~  114 (119)
                      ..+....+.=  |++..++..++.++.    .|.... .+.+|.....+|++.||...|.+++. +--+++..++.++++
T Consensus        61 ~~~~a~~q~l--dP~R~~Rea~~~~~~----ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A  133 (251)
T COG4700          61 TLLMALQQKL--DPERHLREATEELAI----APTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA  133 (251)
T ss_pred             HHHHHHHHhc--ChhHHHHHHHHHHhh----chhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence            3455555555  888899888999998    665554 56799999999999999999999987 556778888888776


Q ss_pred             Cc
Q 033440          115 HP  116 (119)
Q Consensus       115 ~~  116 (119)
                      .+
T Consensus       134 qf  135 (251)
T COG4700         134 QF  135 (251)
T ss_pred             HH
Confidence            54

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.14  E-value=0.28  Score=36.23  Aligned_cols=86  Identities=19%  Similarity=0.080  Sum_probs=66.1

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc-----C-----------------CCcchH---HHH
Q 033440           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV-----L-----------------SDSENS---VLY   74 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-----~-----------------~~~~~~---~~~   74 (119)
                      +-.+...+|=+..++.+++.++.++|  |++.|.+..++||=...     .                 ..+.|-   .+.
T Consensus        29 l~~ll~~~PyHidtLlqls~v~~~~g--d~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal  106 (360)
T PF04910_consen   29 LINLLQKNPYHIDTLLQLSEVYRQQG--DHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL  106 (360)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence            44455778889999999999999999  99999999999983311     0                 122222   355


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhCCC-CHHH
Q 033440           75 ANRAHVNLLLGNYRRAFTDAEEALKLCPT-NVKV  107 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a  107 (119)
                      +.....+.+.|-+..|++.|+-.+.+||. ++-+
T Consensus       107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen  107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence            55567778899999999999999999998 6543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=95.12  E-value=0.043  Score=24.53  Aligned_cols=24  Identities=17%  Similarity=-0.110  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      .+.+++|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667777777777777766554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.07  E-value=0.39  Score=40.35  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...|..+...+.+.|  ++++|...+.+.........|+ ...|..+-.+|.+.|++++|+..++++.+.
T Consensus       542 ~vTYnsLI~a~~k~G--~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        542 RVVFNALISACGQSG--AVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            344555555555555  5555555555544310000222 223333444444444444444444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.01  E-value=0.13  Score=39.16  Aligned_cols=72  Identities=7%  Similarity=-0.034  Sum_probs=54.3

Q ss_pred             HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .-+.-+|.+|  +|.++.-+-....++    .| .+.++.-+|.|.+..++|.+|...+...- .+.+-...+..+|.++
T Consensus       467 aDAEyLysqg--ey~kc~~ys~WL~~i----aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-~n~~~~dskvqKAl~l  538 (549)
T PF07079_consen  467 ADAEYLYSQG--EYHKCYLYSSWLTKI----AP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP-PNERMRDSKVQKALAL  538 (549)
T ss_pred             HHHHHHHhcc--cHHHHHHHHHHHHHh----CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC-CchhhHHHHHHHHHHH
Confidence            4455678888  999999998888888    88 88999999999999999999999776542 2323234444444443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.98  E-value=0.059  Score=26.68  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +.+..+|.+....+  +|++|+..|.+++++
T Consensus         2 dv~~~Lgeisle~e--~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENE--NFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            45677899999988  999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.94  E-value=0.036  Score=40.34  Aligned_cols=82  Identities=21%  Similarity=0.232  Sum_probs=63.3

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH----HHhcCH
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN----LLLGNY   87 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~----~~l~~~   87 (119)
                      ..+++...++-+.++.|++++.+.+.|...-...  +.-+|-.+|.+|+.+    +|.+..++.||+-..    .--.++
T Consensus       131 k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~--~iv~ADq~Y~~ALti----sP~nseALvnR~RT~plV~~iD~r~  204 (472)
T KOG3824|consen  131 KLEKAMTLFEHALALAPTNPQILIEMGQFREMHN--EIVEADQCYVKALTI----SPGNSEALVNRARTTPLVSAIDRRM  204 (472)
T ss_pred             chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh--hhHhhhhhhheeeee----CCCchHHHhhhhccchHHHHHHHHH
Confidence            4567778888888999999999999999998876  999999999999999    999999999986532    112234


Q ss_pred             HHHHHHHHHHHh
Q 033440           88 RRAFTDAEEALK   99 (119)
Q Consensus        88 ~~A~~~~~~al~   99 (119)
                      -+.+.+-+..+.
T Consensus       205 l~svdskrd~~~  216 (472)
T KOG3824|consen  205 LRSVDSKRDEFN  216 (472)
T ss_pred             HHHHHHHHHHHh
Confidence            444444444444

>PLN03077 Protein ECB2; Provisional

Probab=94.91  E-value=0.19  Score=40.84  Aligned_cols=77  Identities=10%  Similarity=0.075  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      ...+.-+...+.+.|  ++++|.+.+++. ..    .|+ +..|..+-.++..-|+.+.+....+++++++|++...|..
T Consensus       625 ~~~y~~lv~~l~r~G--~~~eA~~~~~~m-~~----~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l  696 (857)
T PLN03077        625 LKHYACVVDLLGRAG--KLTEAYNFINKM-PI----TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL  696 (857)
T ss_pred             hHHHHHHHHHHHhCC--CHHHHHHHHHHC-CC----CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence            345555666666666  666666665542 23    333 3333333334445566666666677777777777777766


Q ss_pred             hhccC
Q 033440          111 CSGSH  115 (119)
Q Consensus       111 ~a~~~  115 (119)
                      ++.+|
T Consensus       697 l~n~y  701 (857)
T PLN03077        697 LCNLY  701 (857)
T ss_pred             HHHHH
Confidence            66554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.87  E-value=0.15  Score=36.62  Aligned_cols=85  Identities=14%  Similarity=-0.025  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh-hccCC-----------------------------CcchHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN-QNVLS-----------------------------DSENSVLYANRAH   79 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~-~~~~~-----------------------------~~~~~~~~~~~a~   79 (119)
                      .+....+.+..+...|  +..+|+..+...+. .....                             ....+.++..+|.
T Consensus       183 ~~~v~~e~akllw~~g--~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~  260 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQG--EQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAK  260 (352)
T ss_pred             CcchHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHH
Confidence            4677778888899988  88999998888887 21100                             0122345566666


Q ss_pred             HHHHh------cCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           80 VNLLL------GNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        80 ~~~~l------~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ....+      +..++++..|++++.++|.+.++|+..|..+.
T Consensus       261 w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  261 WLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence            66666      77888999999999999999999999887654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=94.83  E-value=0.0088  Score=43.69  Aligned_cols=85  Identities=21%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---C------------CCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---L------------SDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ......+.|+..|+.+  +|..|...|.+++....   .            ..+.-...+.+++.|-++++.+..|+..+
T Consensus       221 ~~~~~k~~~~~~~kk~--~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~  298 (372)
T KOG0546|consen  221 REEKKKNIGNKEFKKQ--RYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT  298 (372)
T ss_pred             hhhhhhccchhhhhhc--cHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence            3455677899999988  99999999999886521   0            01112245566677777777777777777


Q ss_pred             HHHHhhCCCCHHHHHHhhccCc
Q 033440           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ..+++.++...++||+++..+.
T Consensus       299 ~~~~~~~~s~tka~~Rr~~~~~  320 (372)
T KOG0546|consen  299 NEALRDERSKTKAHYRRGQAYK  320 (372)
T ss_pred             ccccccChhhCcHHHHHHhHHH
Confidence            7777777777777777776653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.82  E-value=0.27  Score=34.23  Aligned_cols=64  Identities=20%  Similarity=0.106  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhc--cCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQN--VLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      ...++|..++..|  +|++|+..++.+...-  +++..-...+...+..|...+|+.++.+..+-+.+
T Consensus       180 l~~~~A~ey~~~g--~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  180 LSLEMAEEYFRLG--DYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3458899999999  9999999999997541  22234455677888899999999999999877665

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.80  E-value=0.43  Score=38.79  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...+..+|..+...|  ++++|...+.+++.......+  .....+.++|.++...|++++|...+++++.+
T Consensus       491 ~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        491 IVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            345667888888888  999999999999876322111  12346678889999999999999999998886

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.74  E-value=0.58  Score=38.04  Aligned_cols=69  Identities=14%  Similarity=0.092  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC----cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD----SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ...+..+|..++..|  ++++|...+.+++.......    +....++..+|.++...|++++|...+.+++.+.
T Consensus       531 ~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        531 LWSLLQQSEILFAQG--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            445677888999988  99999999999998633211    2233456678888999999999999999988763

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.72  E-value=0.67  Score=33.40  Aligned_cols=85  Identities=12%  Similarity=0.001  Sum_probs=55.4

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHH---------------HHhh------cc---------
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTR---------------AINQ------NV---------   64 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~---------------al~~------~~---------   64 (119)
                      ...+.++.+....|+.+.+...++.++...|  +.+.|...+..               -|++      .|         
T Consensus       152 ~a~~~~~~al~~~~~~~~~~~~la~~~l~~g--~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~  229 (304)
T COG3118         152 EAAPLLKQALQAAPENSEAKLLLAECLLAAG--DVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRL  229 (304)
T ss_pred             hHHHHHHHHHHhCcccchHHHHHHHHHHHcC--ChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            4445666777777777777777777777777  77666655433               1111      01         


Q ss_pred             CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           65 LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        65 ~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ..+|++..+-+.+|..+...|++++|++.+-..++.+
T Consensus       230 aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         230 AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            1267777777777777777888888777776666653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.62  E-value=0.48  Score=36.48  Aligned_cols=73  Identities=14%  Similarity=0.108  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CCCCHHHHHH
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRAFTDAEEALKL-CPTNVKVVIL  110 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~a~~~  110 (119)
                      -..+|.++-+.|  +.++|++.+...+..    .|.  +..++.++..|++.++.|.++.....+-=++ -|......|.
T Consensus       262 KrRLAmCarklG--r~~EAIk~~rdLlke----~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT  335 (539)
T PF04184_consen  262 KRRLAMCARKLG--RLREAIKMFRDLLKE----FPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT  335 (539)
T ss_pred             HHHHHHHHHHhC--ChHHHHHHHHHHHhh----CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence            456899999999  999999999999987    553  6679999999999999999999888775333 2445554554


Q ss_pred             hh
Q 033440          111 CS  112 (119)
Q Consensus       111 ~a  112 (119)
                      .|
T Consensus       336 aA  337 (539)
T PF04184_consen  336 AA  337 (539)
T ss_pred             HH
Confidence            44

The molecular function of this protein is uncertain.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.62  E-value=0.76  Score=32.88  Aligned_cols=67  Identities=18%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ......++..++..+...|  +++.+++.+++.+..    +|-+-.+|..+=..|.+.|+...|+..|++.-.
T Consensus       149 ~e~~~~~l~~lae~~~~~~--~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         149 EELFIKALTKLAEALIACG--RADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4556778888999999988  999999999999999    999999999999999999999999999998765

>PLN03077 Protein ECB2; Provisional

Probab=94.26  E-value=0.31  Score=39.67  Aligned_cols=66  Identities=8%  Similarity=-0.064  Sum_probs=56.5

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .|+ +..|..+-..+...|  +.+.+....++.+++    .|+++..|..++.+|...|+|++|....+...+
T Consensus       654 ~pd-~~~~~aLl~ac~~~~--~~e~~e~~a~~l~~l----~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        654 TPD-PAVWGALLNACRIHR--HVELGELAAQHIFEL----DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             CCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHHHhh----CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            443 666777777777777  999999999999999    999999999999999999999999998877654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.25  E-value=1.1  Score=33.77  Aligned_cols=95  Identities=11%  Similarity=0.023  Sum_probs=70.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC----------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKG----------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      +...+....++...+|+....|.-+=.++-..-          +.-.++-+.....+|..    .|....+++.|..++.
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~----npksY~aW~hR~w~L~  120 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV----NPKSYGAWHHRKWVLQ  120 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh----CchhHHHHHHHHHHHH
Confidence            445556666777788888887765533333211          00345566777888888    9999999999999999


Q ss_pred             HhcC--HHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           83 LLGN--YRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        83 ~l~~--~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +.+.  |..=++.|.++++.||.|..+|--+
T Consensus       121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR  151 (421)
T KOG0529|consen  121 KNPHSDWNTELQLCEKALKQDPRNFHAWHYR  151 (421)
T ss_pred             hCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence            8764  7899999999999999987776443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.23  E-value=0.68  Score=34.46  Aligned_cols=72  Identities=6%  Similarity=0.002  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHH---hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH---------hcCHHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVK---KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL---------LGNYRRAFTDAEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~---~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~---------l~~~~~A~~~~~~a   97 (119)
                      ....-...|.++.+   .|  +.++|+..+..++...   .+.++..+.-+|-+|-.         ....++|+..|+++
T Consensus       178 ~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~---~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg  252 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPG--DREKALQILLPVLESD---ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG  252 (374)
T ss_pred             chHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence            44555677888888   78  9999999999966542   45677777778877654         23588999999999


Q ss_pred             HhhCCCCHH
Q 033440           98 LKLCPTNVK  106 (119)
Q Consensus        98 l~l~p~~~~  106 (119)
                      .+++|+...
T Consensus       253 Fe~~~~~Y~  261 (374)
T PF13281_consen  253 FEIEPDYYS  261 (374)
T ss_pred             HcCCccccc
Confidence            999987543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.06  E-value=0.3  Score=23.78  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHH--HHHHHhh
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDC--YTRAINQ   62 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~--~~~al~~   62 (119)
                      +.++..|..+.++|  ++++|+..  |.-+..+
T Consensus         2 e~~y~~a~~~y~~~--ky~~A~~~~~y~~l~~l   32 (36)
T PF07720_consen    2 EYLYGLAYNFYQKG--KYDEAIHFFQYAFLCAL   32 (36)
T ss_dssp             HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHh
Confidence            45777899999988  99999999  4477766

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.03  E-value=0.75  Score=32.65  Aligned_cols=73  Identities=15%  Similarity=0.063  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +|....+..-+.+  ..+.|-..|.+|+..    .+....+|...|..-+. .++.+.|...++.+++.-|.+...|..-
T Consensus         3 v~i~~m~~~~r~~--g~~~aR~vF~~a~~~----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y   76 (280)
T PF05843_consen    3 VWIQYMRFMRRTE--GIEAARKVFKRARKD----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY   76 (280)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHHHHHHCC----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhC--ChHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            4666666777766  789999999999976    67788999999988666 5667779999999999999888777654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.00  E-value=1.3  Score=34.25  Aligned_cols=79  Identities=13%  Similarity=0.056  Sum_probs=64.3

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +.-+...|..-|.--..++  +++.|-..+++||..    +..+.+++...+.+-++.+....|....++|+.+=|.--+
T Consensus        69 nR~~~~~WikYaqwEesq~--e~~RARSv~ERALdv----d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq  142 (677)
T KOG1915|consen   69 NRLNMQVWIKYAQWEESQK--EIQRARSVFERALDV----DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ  142 (677)
T ss_pred             HHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhc----ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence            3444555666666666655  899999999999998    8889999999999999999999999999999999998777


Q ss_pred             HHHHh
Q 033440          107 VVILC  111 (119)
Q Consensus       107 a~~~~  111 (119)
                      .||.-
T Consensus       143 lWyKY  147 (677)
T KOG1915|consen  143 LWYKY  147 (677)
T ss_pred             HHHHH
Confidence            77753

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.99  E-value=0.81  Score=32.99  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ..+.....+......|  ++..|...+..++..    .|++..+...++.||...|+.+.|...+..
T Consensus       133 ~~e~~~~~~~~~~~~e--~~~~a~~~~~~al~~----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         133 EEEEALAEAKELIEAE--DFGEAAPLLKQALQA----APENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHHHhhhhhhcc--chhhHHHHHHHHHHh----CcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            3455667788889988  999999999999999    999999999999999999999887765544

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.83  E-value=0.55  Score=26.85  Aligned_cols=62  Identities=19%  Similarity=0.242  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ++..+..++..+-+.|  ++++|+.+|+.+|+..-   ...|+++....-+.    +...|-+-++..++.
T Consensus         5 ~A~~~a~~AVe~D~~g--r~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~----ki~eY~~Rae~Lk~~   69 (75)
T cd02682           5 MARKYAINAVKAEKEG--NAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ----MINEYKRRIEVLEKQ   69 (75)
T ss_pred             HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            4667777888888888  99999999998887622   12566665333232    234444444444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.79  E-value=1.1  Score=35.27  Aligned_cols=88  Identities=15%  Similarity=0.058  Sum_probs=68.1

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHH-HHhhccCCCcchHHHHHHH------HHHHHHhcCH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTR-AINQNVLSDSENSVLYANR------AHVNLLLGNY   87 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~------a~~~~~l~~~   87 (119)
                      .+..........+|+.+.....+|......|  ....++..+.+ +...    .|.+......+      |..+..+|+.
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~--~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (620)
T COG3914          85 LAFLAKRIPLSVNPENCPAVQNLAAALELDG--LQFLALADISEIAEWL----SPDNAEFLGHLIRFYQLGRYLKLLGRT  158 (620)
T ss_pred             hHHHHHhhhHhcCcccchHHHHHHHHHHHhh--hHHHHHHHHHHHHHhc----CcchHHHHhhHHHHHHHHHHHHHhccH
Confidence            4555667777889999999999999998877  55555554444 7788    78777666666      7777788999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHH
Q 033440           88 RRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~  108 (119)
                      .++.....+++++.|.++...
T Consensus       159 ~~~~~~l~~~~d~~p~~~~~~  179 (620)
T COG3914         159 AEAELALERAVDLLPKYPRVL  179 (620)
T ss_pred             HHHHHHHHHHHHhhhhhhhhH
Confidence            999999999999999885543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.64  E-value=0.47  Score=33.35  Aligned_cols=63  Identities=22%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch------HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLL-LGNYRRAFTDAEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l  100 (119)
                      +..+.+.+++ |+.+  ++++|+.+++++|++    ..+.      +..+..+|.+|.. +.++++||.+|+++-+.
T Consensus        74 at~YveA~~c-ykk~--~~~eAv~cL~~aieI----yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   74 ATTYVEAANC-YKKV--DPEEAVNCLEKAIEI----YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHHHHHHH-hhcc--ChHHHHHHHHHHHHH----HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3344444444 4545  889999999999988    4322      2344566777763 57888888888887664

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.88  E-value=0.84  Score=37.38  Aligned_cols=87  Identities=20%  Similarity=0.206  Sum_probs=72.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.+...++......+++...+-.+-++|-..+  .+++|+.+|++++..    +|. -...+.+=.||.+-+.|.+--+.
T Consensus        60 ~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~--~~d~~~~~Ye~~~~~----~P~-eell~~lFmayvR~~~yk~qQka  132 (932)
T KOG2053|consen   60 DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG--KLDEAVHLYERANQK----YPS-EELLYHLFMAYVREKSYKKQQKA  132 (932)
T ss_pred             hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh--hhhHHHHHHHHHHhh----CCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777776777778888999999999998  999999999999999    998 77788888999999999988887


Q ss_pred             HHHHHhhCCCCHHH
Q 033440           94 AEEALKLCPTNVKV  107 (119)
Q Consensus        94 ~~~al~l~p~~~~a  107 (119)
                      .-+.-+.-|.++..
T Consensus       133 a~~LyK~~pk~~yy  146 (932)
T KOG2053|consen  133 ALQLYKNFPKRAYY  146 (932)
T ss_pred             HHHHHHhCCcccch
Confidence            77777777766543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.47  E-value=0.21  Score=22.20  Aligned_cols=24  Identities=8%  Similarity=-0.002  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHH
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYT   57 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~   57 (119)
                      .....+|..+...|  ++++|...++
T Consensus         2 ~a~~~la~~~~~~G--~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQG--DPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHh
Confidence            45678999999999  9999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=92.41  E-value=0.55  Score=25.98  Aligned_cols=31  Identities=39%  Similarity=0.563  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|..+-+.|  ++++|+.+|.++++.
T Consensus         4 ~A~~~~~~Av~~D~~g--~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    4 KAIELIKKAVEADEAG--NYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
Confidence            3556667777787878  999999999999876

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.11  E-value=1  Score=31.48  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=50.1

Q ss_pred             HHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440           40 EYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      .+.+.+  ..++|+.....-+..    .|.+.....-+-..+...|+|++|...++-+-.+.|++.
T Consensus        10 eLL~~~--sL~dai~~a~~qVka----kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455          10 ELLDDN--SLQDAIGLARDQVKA----KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHhc--cHHHHHHHHHHHHhc----CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            456666  889999999998988    888887777777778889999999999999999998763

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.53  E-value=0.89  Score=32.86  Aligned_cols=52  Identities=13%  Similarity=0.233  Sum_probs=43.1

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ++++|+..|.+.+++.+....+-..++-..-.+++++++|++.+..|++.|.
T Consensus        42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            7999999999999995444445556777788899999999999999998775

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.45  E-value=3.1  Score=36.10  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=60.8

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .+.+.++...+........|...|..++++.  +-++|-+.+.+|+.-.|.  .+.......-|+.-++.|+.+.+...+
T Consensus      1548 ~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n--e~~aa~~lL~rAL~~lPk--~eHv~~IskfAqLEFk~GDaeRGRtlf 1623 (1710)
T KOG1070|consen 1548 EADELLRLMLKKFGQTRKVWIMYADFLLRQN--EAEAARELLKRALKSLPK--QEHVEFISKFAQLEFKYGDAERGRTLF 1623 (1710)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHhccc--HHHHHHHHHHHHHhhcch--hhhHHHHHHHHHHHhhcCCchhhHHHH
Confidence            4455555555555556677777788888766  667777778888877332  236666667777777777777777777


Q ss_pred             HHHHhhCCCCHHHHH
Q 033440           95 EEALKLCPTNVKVVI  109 (119)
Q Consensus        95 ~~al~l~p~~~~a~~  109 (119)
                      .-.+.-.|...+.|.
T Consensus      1624 Egll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1624 EGLLSAYPKRTDLWS 1638 (1710)
T ss_pred             HHHHhhCccchhHHH
Confidence            777777775554443

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.27  E-value=0.81  Score=26.20  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+..++..+=+.|  +|++|+.+|..+|+.
T Consensus         5 ~Ai~~a~~Ave~D~~g--~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEG--RYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence            4666777788888888  999999999999986

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.23  E-value=1  Score=35.17  Aligned_cols=77  Identities=21%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhC--hh-cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhCCCCH
Q 033440           32 IELKEKGNEYVKKG--KK-HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG---NYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        32 ~~~~~~g~~~~~~g--~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~  105 (119)
                      .+...+|.+|.+..  .. |++.|+.+|.++-+.      .++.+.+.+|.|+..-.   ++..|.+.|..|....  +.
T Consensus       289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~  360 (552)
T KOG1550|consen  289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HI  360 (552)
T ss_pred             ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--Ch
Confidence            34566777777632  12 466777777777776      45566677777776544   4667777777765543  56


Q ss_pred             HHHHHhhccCc
Q 033440          106 KVVILCSGSHP  116 (119)
Q Consensus       106 ~a~~~~a~~~~  116 (119)
                      .+.+++|.+|.
T Consensus       361 ~A~~~la~~y~  371 (552)
T KOG1550|consen  361 LAIYRLALCYE  371 (552)
T ss_pred             HHHHHHHHHHH
Confidence            67777776653

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.07  E-value=4.7  Score=29.42  Aligned_cols=59  Identities=20%  Similarity=0.162  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ..+...+..+...|  .+.+|+.+.++++.+    +|.+-..+..+-..+..+|+--.++.+|.+
T Consensus       280 kllgkva~~yle~g--~~neAi~l~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         280 KLLGKVARAYLEAG--KPNEAIQLHQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHHcC--ChHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            33444555666666  788888888888887    777776666666677777776666666655

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.04  E-value=3.7  Score=32.11  Aligned_cols=89  Identities=17%  Similarity=0.050  Sum_probs=65.0

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRA   90 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A   90 (119)
                      ++..+..+..  -..+.+.+.+|..+.... ..|+..|..+|..|...      ....+.+++|.||..    ..+...|
T Consensus       312 A~~~~~~aA~--~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  312 ALKLYTKAAE--LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             HHHHHHHHHh--cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            3444444333  345667778888887643 02789999999999887      577888899999875    3479999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHhhcc
Q 033440           91 FTDAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      +..+.++.+.+  ++.+.+.++..
T Consensus       384 ~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  384 FAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             HHHHHHHHHcc--ChhhHHHHHHH
Confidence            99999999988  56666666543

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.85  E-value=0.87  Score=26.08  Aligned_cols=31  Identities=29%  Similarity=0.580  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...=+.|  +|++|+.+|.++|+.
T Consensus         5 ~a~~l~~~Ave~D~~g--~y~eAl~~Y~~aie~   35 (77)
T cd02683           5 AAKEVLKRAVELDQEG--RFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            3556667777788878  999999999998875

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.82  E-value=0.67  Score=23.63  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           75 ANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +++|.+|+.+|+++.|....++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.82  E-value=0.83  Score=26.13  Aligned_cols=32  Identities=28%  Similarity=0.294  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhc
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN   63 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~   63 (119)
                      .+..+...|...=..|  +|++|+.+|.++|+.+
T Consensus         5 kai~Lv~~A~~eD~~g--ny~eA~~lY~~ale~~   36 (75)
T cd02680           5 RAHFLVTQAFDEDEKG--NAEEAIELYTEAVELC   36 (75)
T ss_pred             HHHHHHHHHHHhhHhh--hHHHHHHHHHHHHHHH
Confidence            4555666676666767  9999999999999873

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.78  E-value=0.82  Score=20.47  Aligned_cols=26  Identities=27%  Similarity=0.273  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +++.|...|++++...|.++..|...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34455555555555555555554443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=90.68  E-value=0.68  Score=32.49  Aligned_cols=46  Identities=15%  Similarity=0.145  Sum_probs=43.1

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      ...+.+.++..+-|..+..|..+|....+.|  +++.|...|++.+++
T Consensus        13 aaaely~qal~lap~w~~gwfR~g~~~ekag--~~daAa~a~~~~L~l   58 (287)
T COG4976          13 AAAELYNQALELAPEWAAGWFRLGEYTEKAG--EFDAAAAAYEEVLEL   58 (287)
T ss_pred             HHHHHHHHHhhcCchhhhhhhhcchhhhhcc--cHHHHHHHHHHHHcC
Confidence            5667888999999999999999999999999  999999999999999

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=90.44  E-value=0.22  Score=36.66  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=55.2

Q ss_pred             HHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +.+...++.+  ++..|+..-..+++.    ++....+++.++..+..+.++++|+++...+....|++....
T Consensus       280 n~~~~~lk~~--~~~~a~~~~~~~~~~----~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~  346 (372)
T KOG0546|consen  280 NLAAVGLKVK--GRGGARFRTNEALRD----ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE  346 (372)
T ss_pred             chHHhccccc--CCCcceecccccccc----ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence            3555566666  677777777777776    888999999999999999999999999999999999876543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.17  E-value=0.76  Score=34.94  Aligned_cols=57  Identities=21%  Similarity=0.088  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..+..+|.+.+  +++.|+..-.+.|.+    +|..+--|...|.|+..+.+|.+|...+--+
T Consensus       232 tklv~CYL~~r--kpdlALnh~hrsI~l----nP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  232 TKLVTCYLRMR--KPDLALNHSHRSINL----NPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHHhhhhcC--CCchHHHHHhhhhhc----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788899998  899999999999999    9999999999999999999999998765543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.11  E-value=0.95  Score=35.10  Aligned_cols=89  Identities=17%  Similarity=0.062  Sum_probs=70.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ...+.+.......|..+..+...+..+...|  +-+.|+..++..++.  ....-....++.+|.++..+.+|.+|..++
T Consensus       251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g--~~eaa~~~~~~~v~~--~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~  326 (546)
T KOG3783|consen  251 ECEKALKKYRKRYPKGALWLLMEARILSIKG--NSEAAIDMESLSIPI--RMKQVKSLMVFERAWLSVGQHQYSRAADSF  326 (546)
T ss_pred             HHHHHhHHHHHhCCCCccHHHHHHHHHHHcc--cHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3445566677788999999999999999988  788889888887771  214456678899999999999999999999


Q ss_pred             HHHHhhCCCCHHHH
Q 033440           95 EEALKLCPTNVKVV  108 (119)
Q Consensus        95 ~~al~l~p~~~~a~  108 (119)
                      ....+.+. +..+.
T Consensus       327 ~~L~desd-WS~a~  339 (546)
T KOG3783|consen  327 DLLRDESD-WSHAF  339 (546)
T ss_pred             HHHHhhhh-hhHHH
Confidence            99888774 44443

>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]

Probab=90.11  E-value=4.8  Score=29.77  Aligned_cols=73  Identities=15%  Similarity=0.047  Sum_probs=54.9

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ...|+..+.++..+...+.-|  +|..|-.++-....+.+..+++...+....-..-..+.+|+-|+++..+.-+
T Consensus       123 nf~~e~i~~lykyakfqyeCG--NY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre  195 (432)
T KOG2758|consen  123 NFTPERIETLYKYAKFQYECG--NYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE  195 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHhcc--CcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            456888999999999999988  9999988865555554444555555555554555567899999999988765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.07  E-value=3  Score=28.44  Aligned_cols=63  Identities=14%  Similarity=0.101  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+...++..++..+  ++++|+..+..++.. +....-.+.+-.++|.+++.+|.+++|+..+...
T Consensus        90 laaL~lAk~~ve~~--~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          90 LAALELAKAEVEAN--NLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHHhhc--cHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            34557788899988  999999999999976 1112233456778899999999999999876654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.87  E-value=2.1  Score=24.46  Aligned_cols=36  Identities=25%  Similarity=0.206  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhcCHH-------HHHHHHHHHHhhCCCCHHHHH
Q 033440           74 YANRAHVNLLLGNYR-------RAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        74 ~~~~a~~~~~l~~~~-------~A~~~~~~al~l~p~~~~a~~  109 (119)
                      +..+|.-+-+.|++.       +|++.+.+++...|++.....
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~   51 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI   51 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence            334444444445555       455555555666788766443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.83  E-value=5.6  Score=28.40  Aligned_cols=71  Identities=15%  Similarity=0.057  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHh----ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-----------------HH
Q 033440           30 AAIELKEKGNEYVKK----GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-----------------YR   88 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~----g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-----------------~~   88 (119)
                      .+..+..+|.-....    +.+++++++..|..++..    +|....+++..|..+.++=.                 ..
T Consensus       251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (352)
T PF02259_consen  251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL----DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLE  326 (352)
T ss_pred             HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHH
Confidence            456666666666665    222899999999999999    99999999988887765421                 24


Q ss_pred             HHHHHHHHHHhhCCCC
Q 033440           89 RAFTDAEEALKLCPTN  104 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~  104 (119)
                      .|+..|-+++.+.+.+
T Consensus       327 ~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  327 QAIEGYLKALSLGSKY  342 (352)
T ss_pred             HHHHHHHHHHhhCCCc
Confidence            5888999999998874

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.83  E-value=4.6  Score=28.79  Aligned_cols=52  Identities=17%  Similarity=0.151  Sum_probs=24.2

Q ss_pred             cHHHHHHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           48 HYSDAIDCYTRAINQ-NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        48 ~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+.+++.+|++|..+ .....|+.+..-..++.=..+..++++|++.|.+++.
T Consensus        86 klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqrala  138 (308)
T KOG1585|consen   86 KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALA  138 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence            455555555555543 0111233333333344444444555555555555544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.71  E-value=0.78  Score=32.61  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=50.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .+.+....+++..++|.++..+...|.+|.+.|  -+..|+..++..++.    .|+++.+-.-+..
T Consensus       197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~--c~~vAl~dl~~~~~~----~P~~~~a~~ir~~  257 (269)
T COG2912         197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLG--CYHVALEDLSYFVEH----CPDDPIAEMIRAQ  257 (269)
T ss_pred             hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC--CchhhHHHHHHHHHh----CCCchHHHHHHHH
Confidence            345566678888899999999999999999999  999999999999999    7777765544433

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.60  E-value=1.3  Score=25.07  Aligned_cols=31  Identities=35%  Similarity=0.507  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...-..|  +|++|+.+|.++++.
T Consensus         5 ~A~~l~~~Av~~D~~g--~y~eA~~~Y~~aie~   35 (75)
T cd02678           5 KAIELVKKAIEEDNAG--NYEEALRLYQHALEY   35 (75)
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            4566777788888888  999999999999976

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.52  E-value=1.3  Score=36.77  Aligned_cols=54  Identities=19%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+++|+..|++.-..     |.-|.=|...|.+|.++|+|+|-+..+..|++--|.++.
T Consensus       534 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        534 DFTQALSEFSYLHGG-----VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHHHHHHHHHHhcCC-----CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            577888877775554     777888999999999999999999999999998777664

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.46  E-value=0.86  Score=34.11  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC-c-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ...|+.+...+  .|+++++.|+.|+.+....+ | ....++..+|..+-.+.++++|+-...++.++-
T Consensus       126 l~~~~Ahlgls--~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv  192 (518)
T KOG1941|consen  126 LSMGNAHLGLS--VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV  192 (518)
T ss_pred             hhHHHHhhhHH--HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence            34677777777  78888888888887622211 1 123467778888888888888888888887763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=89.29  E-value=2.9  Score=31.24  Aligned_cols=80  Identities=10%  Similarity=-0.084  Sum_probs=56.6

Q ss_pred             HHHHHHHHhChhcHHHHHHHHHHHHhhccCC-CcchHHHHHHHHHHHHH---hcCHHHHHHHHHHHH-hhCCCCHHHHHH
Q 033440           36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-DSENSVLYANRAHVNLL---LGNYRRAFTDAEEAL-KLCPTNVKVVIL  110 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~a~~~~~---l~~~~~A~~~~~~al-~l~p~~~~a~~~  110 (119)
                      ++-..|-...  +|+.-+.+.+..-. .|.. .++.+.+-+..|.++.+   .|+.++|+..+..++ ..++.+++.+-.
T Consensus       146 ~lllSyRdiq--dydamI~Lve~l~~-~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  146 NLLLSYRDIQ--DYDAMIKLVETLEA-LPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHhhhhh--hHHHHHHHHHHhhc-cCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            3344455554  78887777655333 2321 34566777888999998   999999999999954 456678899988


Q ss_pred             hhccCcCC
Q 033440          111 CSGSHPNQ  118 (119)
Q Consensus       111 ~a~~~~~~  118 (119)
                      .|++|-..
T Consensus       223 ~GRIyKD~  230 (374)
T PF13281_consen  223 LGRIYKDL  230 (374)
T ss_pred             HHHHHHHH
Confidence            88887543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.25  E-value=4.3  Score=35.33  Aligned_cols=98  Identities=11%  Similarity=-0.058  Sum_probs=67.2

Q ss_pred             HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc-C-------------------------------
Q 033440           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV-L-------------------------------   65 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-~-------------------------------   65 (119)
                      +++++...-+|..+.-|.+--..+.+.+  +.++|-+...+||..+- +                               
T Consensus      1445 eDferlvrssPNSSi~WI~YMaf~Lels--EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELS--EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhhh--hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence            5666666667777777777777777766  77777777777775530 0                               


Q ss_pred             --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                        ..-+...+|..++.+|.+-+++.+|.+.++..++--....+.|...|..++.
T Consensus      1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred             HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence              0112335666677778888888888888888888666677777777766554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.97  E-value=6.6  Score=30.64  Aligned_cols=81  Identities=14%  Similarity=0.089  Sum_probs=66.0

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ...+++++.-+......|..-+..-++..  ....|-..+++|+.+    -|.--.+++.....--.+|+...|.+.+.+
T Consensus        93 RSv~ERALdvd~r~itLWlkYae~Emknk--~vNhARNv~dRAvt~----lPRVdqlWyKY~ymEE~LgNi~gaRqifer  166 (677)
T KOG1915|consen   93 RSVFERALDVDYRNITLWLKYAEFEMKNK--QVNHARNVWDRAVTI----LPRVDQLWYKYIYMEEMLGNIAGARQIFER  166 (677)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHhhh--hHhHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            34455666666777778888888888876  899999999999999    666667777777777789999999999999


Q ss_pred             HHhhCCC
Q 033440           97 ALKLCPT  103 (119)
Q Consensus        97 al~l~p~  103 (119)
                      =++..|+
T Consensus       167 W~~w~P~  173 (677)
T KOG1915|consen  167 WMEWEPD  173 (677)
T ss_pred             HHcCCCc
Confidence            9999985

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.94  E-value=6.2  Score=27.68  Aligned_cols=81  Identities=16%  Similarity=0.102  Sum_probs=45.9

Q ss_pred             cHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHHh----c---CHHHHHHHH
Q 033440           27 KESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLLL----G---NYRRAFTDA   94 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~l----~---~~~~A~~~~   94 (119)
                      ....+.+.+.+|..+..    ..  |+.+|...|.++.+.    .... ....++++.+|..-    +   ....|+..+
T Consensus       105 ~~g~~~a~~~lg~~~~~G~gv~~--d~~~A~~~~~~Aa~~----g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~  178 (292)
T COG0790         105 ADGLAEALFNLGLMYANGRGVPL--DLVKALKYYEKAAKL----GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLY  178 (292)
T ss_pred             hcccHHHHHhHHHHHhcCCCccc--CHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence            34455566667777765    33  677777777777776    3222 23355566665542    1   222566666


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++....  ++.+.+.+|.+|
T Consensus       179 ~~aa~~~--~~~a~~~lg~~y  197 (292)
T COG0790         179 RKAAELG--NPDAQLLLGRMY  197 (292)
T ss_pred             HHHHHhc--CHHHHHHHHHHH
Confidence            6665554  556666666554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.67  E-value=2.4  Score=31.59  Aligned_cols=50  Identities=20%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             HHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           41 YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        41 ~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      +..-|  -|.+|.+..++++++    +|.+..+....++++...+++.++.+...+
T Consensus       185 L~E~g--~y~dAEk~A~ralqi----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  185 LEECG--IYDDAEKQADRALQI----NRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHhc--cchhHHHHHHhhccC----CCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            34445  666777777777777    666666666666666666666666654443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.56  E-value=1.8  Score=27.75  Aligned_cols=44  Identities=20%  Similarity=0.147  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .....++...+..|+|.-|.+.++.++..+|+|..+...++.++
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al  114 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL  114 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            45567788888999999999999999999999999988888765

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.30  E-value=3.9  Score=31.00  Aligned_cols=70  Identities=23%  Similarity=0.380  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+.-.++.++|..|..-|  +.+.|++.|.++...|+. .-.-...+.|.-.+-.-+|+|........++-..
T Consensus       147 EsiRra~~Dl~dhy~~cG--~l~~Alr~YsR~RdYCTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  147 ESIRRALEDLGDHYLDCG--QLDNALRCYSRARDYCTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             HHHHHHHHHHHHHHHHhc--cHHHHHhhhhhhhhhhcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            444667888999999999  999999999998888544 2344556666666667789999999988888665

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=88.05  E-value=1.9  Score=24.27  Aligned_cols=30  Identities=33%  Similarity=0.489  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|..+-..|  ++++|+.+|..+++.
T Consensus         8 A~~li~~Av~~d~~g--~~~eAl~~Y~~a~e~   37 (77)
T smart00745        8 AKELISKALKADEAG--DYEEALELYKKAIEY   37 (77)
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            445566777777777  899999999998876

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.84  E-value=2  Score=24.12  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...-..|  ++++|+.+|..+++.
T Consensus         6 a~~l~~~Av~~D~~g--~~~~Al~~Y~~a~e~   35 (75)
T cd02656           6 AKELIKQAVKEDEDG--NYEEALELYKEALDY   35 (75)
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            445566777777778  999999999999876

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=87.77  E-value=4.5  Score=31.45  Aligned_cols=61  Identities=16%  Similarity=0.089  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440           49 YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      ...-+..|+.|...    -+.++.++.+-..-..+-+.+.+.-..|.+++..+|+++..|..-|.
T Consensus        87 ~~rIv~lyr~at~r----f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~  147 (568)
T KOG2396|consen   87 PNRIVFLYRRATNR----FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK  147 (568)
T ss_pred             HHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh
Confidence            34556779999988    78888888887665556666999999999999999999999876553

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.67  E-value=3  Score=28.94  Aligned_cols=61  Identities=13%  Similarity=-0.014  Sum_probs=48.2

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL   83 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~   83 (119)
                      ...+..+..+.|+....+.++|..+...|  +.-.|+-+|.+++-.    ....+.+..|+...+.+
T Consensus         2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~--~~l~avy~y~Rsl~~----~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    2 ERYYRKAIRLLPSNGNPYNQLAVLASYQG--DDLDAVYYYIRSLAV----RIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHH-TTBSHHHHHHHHHHHHTT---HHHHHHHHHHHHSS----SB--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcccchhhhhcccc--chHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH
Confidence            34677888999999999999999999988  999999999999965    43347777888777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.59  E-value=2.1  Score=24.34  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+..+|...-..|  +|++|+.+|..+|+.
T Consensus         5 ~Ai~lv~~Av~~D~~g--~y~eA~~lY~~ale~   35 (75)
T cd02684           5 KAIALVVQAVKKDQRG--DAAAALSLYCSALQY   35 (75)
T ss_pred             HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            3455666777777777  999999999999976

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=87.15  E-value=7.5  Score=27.03  Aligned_cols=52  Identities=17%  Similarity=0.168  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhh
Q 033440           49 YSDAIDCYTRAINQN----VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~l  100 (119)
                      -+.|...|++|+++.    |..+|....+..|.+..|+ .+|+.++|+..++++++.
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            467788888888763    2235556667777777665 489999999999988763

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.93  E-value=6.2  Score=30.78  Aligned_cols=99  Identities=17%  Similarity=0.031  Sum_probs=71.2

Q ss_pred             CCCCCCCChhhHHhHHHHHHhcHH---HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh---ccCCCcchHHHHHHHHH
Q 033440            6 DAESEPKTESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ---NVLSDSENSVLYANRAH   79 (119)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~a~   79 (119)
                      .....|...+.++.++.+.+..|.   .+....++|..++.--+ +++.|-..++++..+   +|........++.-++.
T Consensus        18 rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~-N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~   96 (629)
T KOG2300|consen   18 RTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTK-NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAH   96 (629)
T ss_pred             hhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHH
Confidence            344445556677777777655443   35566788888876653 899999999999876   34433444567778899


Q ss_pred             HHHHhc-CHHHHHHHHHHHHhhCCCCH
Q 033440           80 VNLLLG-NYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        80 ~~~~l~-~~~~A~~~~~~al~l~p~~~  105 (119)
                      +|.... .+..+....++++++...++
T Consensus        97 lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   97 LHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            999888 78889999999999876554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=86.25  E-value=13  Score=28.41  Aligned_cols=91  Identities=18%  Similarity=0.110  Sum_probs=49.3

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh--ccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ--NVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~--~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      +...-|...-++...-...+..|  ||+.|+.+.+...+.  +..+  +.....++...+..... -+...|..+..+++
T Consensus       180 Aa~~Ap~l~WA~~AtLe~r~~~g--dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~  256 (531)
T COG3898         180 AAEKAPQLPWAARATLEARCAAG--DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEAN  256 (531)
T ss_pred             HHhhccCCchHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHh
Confidence            33334444444444455566767  888888887766543  1111  11122222222222222 24777788888888


Q ss_pred             hhCCCCHHHHHHhhccCc
Q 033440           99 KLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~  116 (119)
                      ++.|+.+.+-..-+.+++
T Consensus       257 KL~pdlvPaav~AAralf  274 (531)
T COG3898         257 KLAPDLVPAAVVAARALF  274 (531)
T ss_pred             hcCCccchHHHHHHHHHH
Confidence            888887766655555443

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.02  E-value=1.4  Score=31.76  Aligned_cols=99  Identities=11%  Similarity=0.007  Sum_probs=79.9

Q ss_pred             CCCCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH------H
Q 033440            9 SEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN------L   82 (119)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~------~   82 (119)
                      ++...+++.+-++.+..-+|+.-..|..+-.++-.-.+.+|..-+....+.++.    ++.|...+..|-.|.      .
T Consensus        86 k~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~----DsrNyH~W~YR~~vl~~ie~~~  161 (328)
T COG5536          86 KEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDS----DSRNYHVWSYRRWVLRTIEDLF  161 (328)
T ss_pred             chhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcc----cccccceeeeEeeeeecchhhc
Confidence            455677888999999999999999998887777655333788888888999999    898888877776666      4


Q ss_pred             HhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           83 LLGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .-..+.+..++...++..|+.|..||..+
T Consensus       162 N~S~~k~e~eytt~~I~tdi~N~SaW~~r  190 (328)
T COG5536         162 NFSDLKHELEYTTSLIETDIYNNSAWHHR  190 (328)
T ss_pred             cchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence            55567777888888999999999988765

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.87  E-value=7.5  Score=28.93  Aligned_cols=93  Identities=16%  Similarity=0.132  Sum_probs=61.5

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      .-...++.+..+-|+-...++.........|   ++.++...+...+. +. -.....++..+|..+.++|+-++|...|
T Consensus       314 ~I~aLYdaL~~~apSPvV~LNRAVAla~~~G---p~agLa~ve~L~~~-~~-L~gy~~~h~~RadlL~rLgr~~eAr~ay  388 (415)
T COG4941         314 AIDALYDALEQAAPSPVVTLNRAVALAMREG---PAAGLAMVEALLAR-PR-LDGYHLYHAARADLLARLGRVEEARAAY  388 (415)
T ss_pred             HHHHHHHHHHHhCCCCeEeehHHHHHHHhhh---HHhHHHHHHHhhcc-cc-cccccccHHHHHHHHHHhCChHHHHHHH
Confidence            3334455555555654444444444445545   77777766554442 11 1245567888999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhh
Q 033440           95 EEALKLCPTNVKVVILCS  112 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a  112 (119)
                      ++++.+.++-...-+-+.
T Consensus       389 drAi~La~~~aer~~l~~  406 (415)
T COG4941         389 DRAIALARNAAERAFLRQ  406 (415)
T ss_pred             HHHHHhcCChHHHHHHHH
Confidence            999999988776555443

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.70  E-value=7  Score=24.79  Aligned_cols=63  Identities=13%  Similarity=0.022  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----C-c------chHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----D-S------ENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~-~------~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+..+|+..++.+  ++-.++-.|++|+.+...-    . .      -....-.|+|.-+..+|+.+-.+.++.-|
T Consensus         3 ~htllAd~a~~~~--~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA   76 (140)
T PF10952_consen    3 KHTLLADQAFKEA--DPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA   76 (140)
T ss_pred             hHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence            4667899999999  9999999999999762110    0 0      01234567888888899999888877654

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=85.65  E-value=3.2  Score=22.81  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=14.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           75 ANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+.|.-.-..|++++|+..|.++++
T Consensus         9 ~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    9 IKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3344444445666666666666554

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF12854 PPR_1: PPR repeat

Probab=85.64  E-value=2.6  Score=19.82  Aligned_cols=27  Identities=22%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           70 NSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      +...|..+-.++.+.|+.++|++.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            455567777788888888888887765

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.40  E-value=1.9  Score=31.32  Aligned_cols=40  Identities=23%  Similarity=0.086  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           72 VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        72 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      ..+...+..|...|.+.+|++.+++++.++|-+...+..+
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~l  319 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGL  319 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHH
Confidence            4556677889999999999999999999999776655544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.10  E-value=8.7  Score=31.03  Aligned_cols=87  Identities=21%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHHhcCHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      +.....++++..+.-.-+..-.+-|..+..+.  -|+++...|++.|.+.++... +.+..|.......+.-...+.|..
T Consensus       494 estk~vYdriidLriaTPqii~NyAmfLEeh~--yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd  571 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHK--YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD  571 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH--HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            34455667766666555666677787777766  899999999999988555221 233444444444444457889999


Q ss_pred             HHHHHHhhCC
Q 033440           93 DAEEALKLCP  102 (119)
Q Consensus        93 ~~~~al~l~p  102 (119)
                      .++++|+..|
T Consensus       572 LFEqaL~~Cp  581 (835)
T KOG2047|consen  572 LFEQALDGCP  581 (835)
T ss_pred             HHHHHHhcCC
Confidence            9999999887

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.83  E-value=2.6  Score=32.81  Aligned_cols=49  Identities=20%  Similarity=0.291  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL   83 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~   83 (119)
                      +..+.+++.|..+...|  ++-.|..+|.+++..    ...+|.+|..++.|.+.
T Consensus       333 ks~eilYNcG~~~Lh~g--rPl~AfqCf~~av~v----fh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHSG--RPLLAFQCFQKAVHV----FHRNPRLWLRLAECCIM  381 (696)
T ss_pred             cchhhHHhhhHHHHhcC--CcHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHH
Confidence            34677899999999999  999999999999999    88999999999998764

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.58  E-value=3.5  Score=23.43  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...-..|  +|++|+.+|..+|+.
T Consensus         6 A~~l~~~Ave~d~~~--~y~eA~~~Y~~~i~~   35 (75)
T cd02677           6 AAELIRLALEKEEEG--DYEAAFEFYRAGVDL   35 (75)
T ss_pred             HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence            445556666666667  899999999988876

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.85  E-value=3.9  Score=33.14  Aligned_cols=76  Identities=22%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ...+......+.++.+.|=++|..++.--+-++..    .|....++..++.||.-+++++-|+++.+-+...+|.++.+
T Consensus        88 ~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~----~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~  163 (748)
T KOG4151|consen   88 HVVATLRSNQASCYMQLGLGEYPKAIPECELALES----QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA  163 (748)
T ss_pred             hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc----cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence            44555566677777666555899999888888888    99999999999999999999999999988899999998544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=83.84  E-value=9.3  Score=24.66  Aligned_cols=56  Identities=9%  Similarity=0.008  Sum_probs=41.3

Q ss_pred             hhHHhHHHHHH-hcHH-HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 033440           15 SEKADLDAIAA-LKES-AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN   76 (119)
Q Consensus        15 ~~~~~~~~~~~-~~~~-~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   76 (119)
                      +.+..++.+.+ ..|+ .-+.++-++..+++.+  +|+.++.+.+..++.    .|+|..+..-
T Consensus        53 ~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk--eY~~s~~yvd~ll~~----e~~n~Qa~~L  110 (149)
T KOG3364|consen   53 EGIVILEDLLKSAHPERRRECLYYLAVGHYRLK--EYSKSLRYVDALLET----EPNNRQALEL  110 (149)
T ss_pred             HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh--hHHHHHHHHHHHHhh----CCCcHHHHHH
Confidence            34455666553 3343 4455777888899988  999999999999999    8888876543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=83.83  E-value=3.6  Score=30.96  Aligned_cols=66  Identities=21%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--Ccch----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSEN----SVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ....+|..+-+..  |+++|+-...+|.++-...  +..+    ..+.+.++..+..+|+..+|.+.|+++.++
T Consensus       164 vcv~Lgslf~~l~--D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  164 VCVSLGSLFAQLK--DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             hhhhHHHHHHHHH--hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            3556788888877  9999999999988872211  1222    245677888999999999999999999775

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.50  E-value=3.3  Score=23.90  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +....+.|..+-..|  +.+.|+..|++++..
T Consensus         8 A~~~I~kaL~~dE~g--~~e~Al~~Y~~gi~~   37 (79)
T cd02679           8 AFEEISKALRADEWG--DKEQALAHYRKGLRE   37 (79)
T ss_pred             HHHHHHHHhhhhhcC--CHHHHHHHHHHHHHH
Confidence            344455555555556  777777777777755

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=83.38  E-value=17  Score=27.29  Aligned_cols=85  Identities=16%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-----------------C--CcchHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-----------------S--DSENSVLY   74 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----------------~--~~~~~~~~   74 (119)
                      .+.++..-.++.+||+-+.++.-++..--.    -..+|.+++.+|+.....                 .  -..+...|
T Consensus       201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~----Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y  276 (556)
T KOG3807|consen  201 PARIKAAYQALEINNECATAYVLLAEEEAT----TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY  276 (556)
T ss_pred             HHHHHHHHHHHhcCchhhhHHHhhhhhhhh----hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence            345666777788999999888877655433    345666666666643110                 0  11233333


Q ss_pred             --HHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           75 --ANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        75 --~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                        ..++.|-.++|+..+|+..++...+--|
T Consensus       277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence              4568899999999999999988776655

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=82.91  E-value=8.2  Score=23.33  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      ...+......|...+-.|  ||..|.+...++-+.    .+..+..|.--+.+=..+|
T Consensus        56 ~~ka~~al~~Gl~al~~G--~~~~A~k~~~~a~~~----~~~~~l~~L~AA~AA~~~g  107 (108)
T PF07219_consen   56 RRKAQRALSRGLIALAEG--DWQRAEKLLAKAAKL----SDNPLLNYLLAARAAQAQG  107 (108)
T ss_pred             HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcC
Confidence            445666677788888888  888888888888776    5555555554444444443

These are membrane protein involved in a late step of protoheme IX synthesis [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.63  E-value=15  Score=26.25  Aligned_cols=49  Identities=24%  Similarity=0.240  Sum_probs=27.4

Q ss_pred             cHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           48 HYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      +++.|+.+|++++.+....  ...-...+...+.++.++.+|.+|-..+.+
T Consensus       125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            5666666666665541111  112234555666667777777777666655

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.38  E-value=3.2  Score=23.63  Aligned_cols=14  Identities=14%  Similarity=0.202  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHhh
Q 033440           49 YSDAIDCYTRAINQ   62 (119)
Q Consensus        49 ~~~A~~~~~~al~~   62 (119)
                      ..+|+....+|++.
T Consensus         3 l~~A~~l~~~Ave~   16 (75)
T cd02677           3 LEQAAELIRLALEK   16 (75)
T ss_pred             HHHHHHHHHHHHHH
Confidence            45677777777766

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.31  E-value=11  Score=29.60  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      |.-.|-.....++.-    .|.+|....-++.++..+|.|+.+..+..-
T Consensus       304 d~~aas~~~~~~lr~----~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~  348 (831)
T PRK15180        304 DIIAASQQLFAALRN----QQQDPVLIQLRSVIFSHLGYYEQAYQDISD  348 (831)
T ss_pred             CHHHHHHHHHHHHHh----CCCCchhhHHHHHHHHHhhhHHHHHHHhhc
Confidence            555555555555555    555665555566666666666666555443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.12  E-value=3.3  Score=33.00  Aligned_cols=73  Identities=21%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             HHHHHH-hChhcHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           38 GNEYVK-KGKKHYSDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        38 g~~~~~-~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +..|.+ .|  +...|+.++..|+..    .|... ....++|.++++-|-..+|-..+.++|.++-..+-.++..|.++
T Consensus       613 aglywr~~g--n~~~a~~cl~~a~~~----~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~  686 (886)
T KOG4507|consen  613 AGLYWRAVG--NSTFAIACLQRALNL----APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAY  686 (886)
T ss_pred             ccceeeecC--CcHHHHHHHHHHhcc----ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence            334443 44  999999999999998    66433 45688999999999999999999999999977788888888876


Q ss_pred             c
Q 033440          116 P  116 (119)
Q Consensus       116 ~  116 (119)
                      +
T Consensus       687 l  687 (886)
T KOG4507|consen  687 L  687 (886)
T ss_pred             H
Confidence            4

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.04  E-value=5.8  Score=29.63  Aligned_cols=63  Identities=16%  Similarity=0.054  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ......+...|+.++.++  +++.|...|..|.+++...    .-+....++-.|..++.+++.+..+-
T Consensus        38 ~~~~e~lv~~G~~~~~~~--d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL  104 (400)
T KOG4563|consen   38 EKTLEELVQAGRRALCNN--DIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL  104 (400)
T ss_pred             HHHHHHHHHhhhHHHhcc--cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445777889999999998  9999999999999873221    23456677788888888887776553

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=82.01  E-value=3.3  Score=18.20  Aligned_cols=24  Identities=13%  Similarity=0.128  Sum_probs=13.0

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           76 NRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        76 ~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+-.+|.+.|++++|...+++..+
T Consensus         5 ~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    5 SLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHccchHHHHHHHHHHHhH
Confidence            344455555666666665555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.79  E-value=13  Score=24.71  Aligned_cols=49  Identities=22%  Similarity=0.262  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..++...+.+..    .| ++.++.+.+.++..+|+.++|.....++..+-|.+
T Consensus       129 ~~~~~a~~~l~~----~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  129 AYIEWAERLLRR----RP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHh----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            333445555555    55 77788999999999999999999999999999943

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.31  E-value=19  Score=27.49  Aligned_cols=30  Identities=17%  Similarity=0.393  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .....+.|-.++..|  +|++|+..|+..|-.
T Consensus       204 L~~~Lk~gyk~~t~g--KF~eA~~~Fr~iL~~  233 (422)
T PF06957_consen  204 LEERLKEGYKLFTAG--KFEEAIEIFRSILHS  233 (422)
T ss_dssp             HHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence            444566789999998  999999999998855

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=81.23  E-value=11  Score=26.73  Aligned_cols=57  Identities=19%  Similarity=0.130  Sum_probs=44.1

Q ss_pred             HHhChhcHHHHHHHHHHHHhhccCCCcc----hHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhh
Q 033440           42 VKKGKKHYSDAIDCYTRAINQNVLSDSE----NSVLYANRAHVNLLLG-NYRRAFTDAEEALKL  100 (119)
Q Consensus        42 ~~~g~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l  100 (119)
                      .++|  |++.|...+.++-......+|+    -...+++.|.-....+ ++++|+.-.++++++
T Consensus         4 ~~~~--~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    4 WKQG--DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhhC--CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            4566  9999999999887663111343    3367888899999999 999999999998887

It is also involved in sporulation [].

>PF13041 PPR_2: PPR repeat family

Probab=80.72  E-value=5.7  Score=20.05  Aligned_cols=27  Identities=15%  Similarity=0.343  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAIN   61 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~   61 (119)
                      .|..+-..+.+.|  ++++|++.|++..+
T Consensus         5 ~yn~li~~~~~~~--~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    5 TYNTLISGYCKAG--KFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHCc--CHHHHHHHHHHHHH
Confidence            3444445555544  55555555555443

>smart00101 14_3_3 14-3-3 homologues

Probab=80.48  E-value=12  Score=26.29  Aligned_cols=51  Identities=18%  Similarity=0.110  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 033440           49 YSDAIDCYTRAINQN----VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALK   99 (119)
Q Consensus        49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~   99 (119)
                      -+.|...|+.|+++.    |..+|-...+..|.+..|+ -+++.++|+...++++.
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd  199 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  199 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            457888899998762    2224555556667777666 46999999988887765

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=80.16  E-value=24  Score=27.01  Aligned_cols=46  Identities=11%  Similarity=0.064  Sum_probs=33.4

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      ...+......++.|+.+.+-...+..+|+.|  +..++-.+++.+...
T Consensus       247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~--~~rKg~~ilE~aWK~  292 (531)
T COG3898         247 SARDDALEANKLAPDLVPAAVVAARALFRDG--NLRKGSKILETAWKA  292 (531)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHhcc--chhhhhhHHHHHHhc
Confidence            3444555566777777777778888888887  788877777777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		4e-06
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		1e-05
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		2e-05
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-05
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		1e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		2e-04
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		7e-04

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 23  IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
           +A +    A E K KGNEY KKG   Y  A+    R  N+ V  D EN++LY+NRA    
Sbjct: 5   LAYINPELAQEEKNKGNEYFKKG--DYPTAM----RHYNEAVKRDPENAILYSNRAACLT 58
Query: 83  LLGNYRRAFTDAEEALKLCPTNVKVVI 109
            L  ++RA  D +  ++L    +K  I
Sbjct: 59  KLMEFQRALDDCDTCIRLDSKFIKGYI 85

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A+ +K KGNE  +KG   Y  A+  YT AI +N     +++ LY+NRA     L  ++ A
Sbjct: 16  ALMVKNKGNECFQKG--DYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLA 69
Query: 91  FTDAEEALKLCPTNVK 106
             D EE ++L PT +K
Sbjct: 70  LKDCEECIQLEPTFIK 85

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 33  ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92
           ELKEKGN+ +  G  +  DA+ CY+ AI      D  N VLY+NR+      G+Y++A+ 
Sbjct: 6   ELKEKGNKALSVG--NIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYE 59
Query: 93  DAEEALKLCP 102
           D  + + L P
Sbjct: 60  DGCKTVDLKP 69

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 26  LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85
           +K  +A ELKE+GN     G+K Y +A  CY RAI +N L     +V Y NRA   L + 
Sbjct: 4   MKSPSAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQ 57
Query: 86  NYRRAFTDAEEALKLCPTNVK 106
              +A  D   AL+L   +VK
Sbjct: 58  QPEQALADCRRALELDGQSVK 78

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 30  AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89
           +A ELKE+GN     G+K Y +A  CY RAI +N L     +V Y NRA   L +    +
Sbjct: 3   SAQELKEQGNRLFV-GRK-YPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQ 56
Query: 90  AFTDAEEALKLCPTNVK 106
           A  D   AL+L   +VK
Sbjct: 57  ALADCRRALELDGQSVK 73

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 35  KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA 94
           KE+GN   K+G   Y +A+ CY    +Q + +  +N V Y+N+A   + LG Y +A    
Sbjct: 8   KEQGNSLFKQGL--YREAVHCY----DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 95  EEALKLCPTNVKVVI 109
           ++ L+   T   V I
Sbjct: 62  QQGLRYTSTAEHVAI 76

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 29  SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
           S+  +L+++GNE  K G   Y  A+  YT+A+  +  +  + +VL+ NRA  +L L +Y 
Sbjct: 26  SSVEQLRKEGNELFKCG--DYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYD 82
Query: 89  RAFTDAEEALKLCPTNVKVV 108
           +A T+A +A++    +VK +
Sbjct: 83  KAETEASKAIEKDGGDVKAL 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-22
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-20
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-20
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-20
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-20
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	5e-20
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-19
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-17
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-16
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-14
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 83.6 bits (207), Expect = 5e-22
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 6   DAESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL 65
              S              A    S+  +L+++GNE  K G   Y  A+  YT+A+  +  
Sbjct: 3   SGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGD--YGGALAAYTQALGLD-A 59

Query: 66  SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           +  + +VL+ NRA  +L L +Y +A T+A +A++    +VK
Sbjct: 60  TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 81.1 bits (201), Expect = 3e-21
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 23  IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL 82
           +A +    A E K KGNEY KKG   Y  A+  Y  A+ +    D EN++LY+NRA    
Sbjct: 5   LAYINPELAQEEKNKGNEYFKKGD--YPTAMRHYNEAVKR----DPENAILYSNRAACLT 58

Query: 83  LLGNYRRAFTDAEEALKLCPTNVK 106
            L  ++RA  D +  ++L    +K
Sbjct: 59  KLMEFQRALDDCDTCIRLDSKFIK 82

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 80.3 bits (199), Expect = 4e-21
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
             ELKEKGN+ +  G     DA+ CY+ AI      D  N VLY+NR+      G+Y++A
Sbjct: 4   VNELKEKGNKALSVGN--IDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKA 57

Query: 91  FTDAEEALKLCPTNVK 106
           + D  + + L P   K
Sbjct: 58  YEDGCKTVDLKPDWGK 73

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 79.6 bits (197), Expect = 1e-20
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 17  KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN 76
                  + +    A+ +K KGNE  +KG   Y  A+  YT AI +    + +++ LY+N
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGD--YPQAMKHYTEAIKR----NPKDAKLYSN 55

Query: 77  RAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           RA     L  ++ A  D EE ++L PT +K
Sbjct: 56  RAACYTKLLEFQLALKDCEECIQLEPTFIK 85

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 79.7 bits (197), Expect = 1e-20
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 26  LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG 85
           +K  +A ELKE+GN      K  Y +A  CY RAI +    +   +V Y NRA   L + 
Sbjct: 4   MKSPSAQELKEQGNRLFVGRK--YPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQ 57

Query: 86  NYRRAFTDAEEALKLCPTNVK 106
              +A  D   AL+L   +VK
Sbjct: 58  QPEQALADCRRALELDGQSVK 78

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 81.9 bits (202), Expect = 3e-20
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 29  SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
            +A ELKE+GN      K  Y +A  CY RAI +N       +V Y NRA   L +    
Sbjct: 2   PSAQELKEQGNRLFVGRK--YPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPE 55

Query: 89  RAFTDAEEALKLCPTNVK 106
           +A  D   AL+L   +VK
Sbjct: 56  QALADCRRALELDGQSVK 73

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 78.1 bits (193), Expect = 4e-20
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A E + +G EY  K    + +A+  YT  I +      E++  Y+NRA     L ++  A
Sbjct: 4   AEEARLEGKEYFTKSD--WPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEA 57

Query: 91  FTDAEEALKLCPTNVK 106
             D  +A++  P  V+
Sbjct: 58  IADCNKAIEKDPNFVR 73

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 78.9 bits (195), Expect = 5e-20
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 24  AALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL 83
           A      A ELK + N+Y K     Y +AI  Y++AI      +  N++ Y NR+   L 
Sbjct: 6   ADGALKRAEELKTQANDYFKAKD--YENAIKFYSQAIEL----NPSNAIYYGNRSLAYLR 59

Query: 84  LGNYRRAFTDAEEALKLCPTNVK 106
              Y  A  DA  A++L    +K
Sbjct: 60  TECYGYALGDATRAIELDKKYIK 82

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 77.1 bits (190), Expect = 3e-19
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 28  ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY 87
              + +LK +GN  + + +  YS AID YT+A++        N +  +NRA      G +
Sbjct: 8   TPESDKLKSEGNAAMARKE--YSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQH 61

Query: 88  RRAFTDAEEALKLCPTNVK 106
            +A  DAE A  + P   K
Sbjct: 62  EKAAEDAELATVVDPKYSK 80

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 75.4 bits (186), Expect = 3e-19
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
             + KE+GN   K+G   Y +A+ CY + I        +N V Y+N+A   + LG Y +A
Sbjct: 4   FEKQKEQGNSLFKQGL--YREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQA 57

Query: 91  FTDAEEALKLCPTNVK 106
               ++ L+   T   
Sbjct: 58  IQMCQQGLRYTSTAEH 73

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 75.7 bits (187), Expect = 4e-19
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A  LK +GNE +K     +  A+  Y +AI      +  N+V + NRA     LGNY  A
Sbjct: 12  AERLKTEGNEQMKVEN--FEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGA 65

Query: 91  FTDAEEALKLCPTNVK 106
             D E A+ + P   K
Sbjct: 66  VQDCERAICIDPAYSK 81

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 73.9 bits (182), Expect = 6e-17
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 29  SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR 88
             A ELK + N+Y K     Y +AI  Y++AI  N      N++ Y NR+   L    Y 
Sbjct: 4   KRAEELKTQANDYFKAKD--YENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYG 57

Query: 89  RAFTDAEEALKLCPTNVK 106
            A  DA  A++L    +K
Sbjct: 58  YALGDATRAIELDKKYIK 75

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN--------------QNVLSDSENSV 72
           K  +   L++KGNE   +    Y +AID Y  A+               + V  D +N  
Sbjct: 7   KLKSVEALRQKGNELFVQKD--YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           LYAN +   L +G+   A   + E LK   TN K
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEK 98

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 68.5 bits (168), Expect = 3e-16
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A++ KE GN+  KK    +  A+  Y +A       D  N     N+A V    G+Y + 
Sbjct: 4   ALKEKELGNDAYKKKD--FDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKC 57

Query: 91  FTDAEEALKLCPTNVK 106
               E+A+++   N +
Sbjct: 58  RELCEKAIEVGRENRE 73

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN------------QNVLSDSENSVLY 74
           K  +A ++KE+GNE+ KK +   ++AI  Y  A++                  +      
Sbjct: 34  KVQSAFDIKEEGNEFFKKNE--INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91

Query: 75  ANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
            N A       +Y +A   A + LK+   NVK
Sbjct: 92  LNLATCYNKNKDYPKAIDHASKVLKIDKNNVK 123

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 62.7 bits (153), Expect = 4e-14
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 30  AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR 89
           AAI  K+ GN   K+    +  A   Y +AI      D  N   Y N+A V      +  
Sbjct: 7   AAIAEKDLGNAAYKQKD--FEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAE 60

Query: 90  AFTDAEEALKLCPTNVK 106
                E+A+++      
Sbjct: 61  CVQFCEKAVEVGRETRA 77

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN-----------QNVLSDSENSVLYA 75
           K   +  +KE+G  Y K+GK  Y  A+  Y + ++           +   + +     + 
Sbjct: 143 KLEQSTIVKERGTVYFKEGK--YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200

Query: 76  NRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           N A  +L L  +  A     +AL+L   N K
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEK 231

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 47  KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
           + +S AI+   +A+      DS N    + R   +L + ++  A  D ++ L+L P N
Sbjct: 210 QAFSAAIESCNKALEL----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 12  KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS 71
             E E    +A A +    A E + +G EY  K    + +A+  YT  I +      E++
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNAVKAYTEMIKRA----PEDA 173

Query: 72  VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
             Y+NRA     L ++  A  D  +A++  P  V+
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A + K +GN++ K  +  + +AI+ Y +A   +     ++     NRA      G Y  A
Sbjct: 5   ADKEKAEGNKFYKARQ--FDEAIEHYNKAWELH-----KDITYLNNRAAAEYEKGEYETA 57

Query: 91  FTDAEEALKLCPTNVK 106
            +   +A++       
Sbjct: 58  ISTLNDAVEQGREMRA 73

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 15/89 (16%)

Query: 21  DAIAALKESAAIELKE-------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL 73
           +AI    +  A EL +       +     +KG+  Y  AI     A+ Q      E    
Sbjct: 23  EAIEHYNK--AWELHKDITYLNNRAAAEYEKGE--YETAISTLNDAVEQG----REMRAD 74

Query: 74  YANRAHVNLLLGNYRRAFTDAEEALKLCP 102
           Y   +     +GN      D ++ ++   
Sbjct: 75  YKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 16/92 (17%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +A+ A  E   I+           +     K     + +AI    +AI +    D     
Sbjct: 157 NAVKAYTE--MIKRAPEDARGYSNRAAALAKLMS--FPEAIADCNKAIEK----DPNFVR 208

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
            Y  +A   + +  Y  A    + A       
Sbjct: 209 AYIRKATAQIAVKEYASALETLDAARTKDAEV 240

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 17/92 (18%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            AI+ L +  A+E               + + G       +    + I        + S+
Sbjct: 56  TAISTLND--AVEQGREMRADYKVISKSFARIGN--AYHKLGDLKKTIEYY-----QKSL 106

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
                A +   L N  +    AE    + P  
Sbjct: 107 TEHRTADILTKLRNAEKELKKAEAEAYVNPEK 138

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 7e-12
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
           K+  A+ LK+KGN++ +  K  Y DAI  Y  A+        E+ V Y+N +   + +G+
Sbjct: 2   KDKYALALKDKGNQFFRNKK--YDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGD 54

Query: 87  YRRAFTDAEEALKLCPTNVK 106
            ++    + +AL+L P   K
Sbjct: 55  LKKVVEMSTKALELKPDYSK 74

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 21  DAIAALKESAAIELKEKGNEYVKKG-----KKHYSDAIDCYTRAINQNVLSDSENSVLYA 75
            A   +K+  AIEL  + N Y+        +   ++  + + +A+  +    S NS +Y 
Sbjct: 255 GAHEDIKK--AIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD----SNNSSVYY 308

Query: 76  NRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           +R  +N +L NY +A  D ++A +L P N+ 
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIF 339

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 8   ESEPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD 67
           ++    E +    +    LKE  AI L+  G     K       A +   +AI       
Sbjct: 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND--PLGAHEDIKKAIELF---- 267

Query: 68  SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
                 Y   A +     +    +   ++ALKL   N  V
Sbjct: 268 -PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           A  + +          +++ +A +   +A       D  +       A + L   +   A
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKL----DPRSEQAKIGLAQMKLQQEDIDEA 468

Query: 91  FTDAEEALKLCPTN 104
            T  EE+  L  T 
Sbjct: 469 ITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +      +  A++L          +G          Y  A   + +A   +     EN  
Sbjct: 288 EYYNYFDK--ALKLDSNNSSVYYHRGQMNFILQN--YDQAGKDFDKAKELD----PENIF 339

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            Y   A +      +    T   EA +  P   +V
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 12  KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS 71
           K +  +            A             K    +  A+  Y  AI       ++  
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND--FDKALKQYDLAIELE----NKLD 406

Query: 72  VLYANRAHV---------NLLLGNYRRAFTDAEEALKLCPTNVK 106
            +Y   A +         N  + N+  A    E+A KL P + +
Sbjct: 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            A     +  A EL         +      ++ K  + D    ++ A  +      E   
Sbjct: 322 QAGKDFDK--AKELDPENIFPYIQLACLAYRENK--FDDCETLFSEAKRKF----PEAPE 373

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           +    A +     ++ +A    + A++L      +
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 21  DAIAALKESAAIELKE-------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL 73
           DAI       A+ELKE           YV  G       ++  T+A+        + S +
Sbjct: 24  DAIKYYNW--ALELKEDPVFYSNLSACYVSVGD--LKKVVEMSTKALELK----PDYSKV 75

Query: 74  YANRAHVNLLLGNYRRAFTDAEEALKL 100
              RA  N  LG +  A  D       
Sbjct: 76  LLRRASANEGLGKFADAMFDLSVLSLN 102

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 33  ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92
           +  E G + +  G+   +DA+  +  A++     D +N + Y  RA V L +G  + A  
Sbjct: 28  KHLELGKKLLAAGQ--LADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 81

Query: 93  DAEEALKLCPTNVKV 107
           D  + ++L       
Sbjct: 82  DLTKVIQLKMDFTAA 96

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 33  ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92
           +L E   E ++ G+  Y+DA   Y   +                  H          A  
Sbjct: 259 KLIESAEELIRDGR--YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316

Query: 93  DAEEALKLCPTNVKV 107
              E L++ P NV  
Sbjct: 317 VCSEVLQMEPDNVNA 331

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 10  EPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE 69
           +      +        +K      L+ +       G   Y+ AI    + +         
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--YTAAIAFLDKILEVC----VW 175

Query: 70  NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105
           ++ L   RA   +  G  R+A +D + A KL   N 
Sbjct: 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 18  ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
           A LD I  +    A   + +   ++K+G+     AI     A        ++N+  +   
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLKAASKLK----NDNTEAFYKI 217

Query: 78  AHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           + +   LG++  + ++  E LKL   + + 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRC 247

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 23/106 (21%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAI-----------N 61
            A+  L +   I+LK        ++G+  +K+GK    +A D + + +            
Sbjct: 78  AALPDLTK--VIQLKMDFTAARLQRGHLLLKQGK--LDEAEDDFKKVLKSNPSENEEKEA 133

Query: 62  QNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           Q+ L  S+      ++A      G+Y  A    ++ L++C  + ++
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 16/97 (16%)

Query: 21  DAIAALKESAAIELKEKGNEY----------VKKGKKHYSDAIDCYTRAINQNVLSDSEN 70
           DA +  +    ++ +    EY               +   +AI   +  +      + +N
Sbjct: 275 DATSKYES--VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM----EPDN 328

Query: 71  SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
                +RA   L+   Y  A  D E A +    + ++
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 21  DAIAALKESAAIE-LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAH 79
              A  K+   +  L E   E ++ G+  Y+DA   Y   +                  H
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGR--YTDATSKYESVMKTEPSVAEYTVRSKERICH 280

Query: 80  VNLLLGNYRRAFTDAEEALKLCPTNVK 106
                     A     E L++ P NV 
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVN 307

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 33  ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT 92
           +  E G + +  G+   +DA+  +  A++     D +N + Y  RA V L +G  + A  
Sbjct: 5   KHLELGKKLLAAGQ--LADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 58

Query: 93  DAEEALKLCPTNVK 106
           D  + + L      
Sbjct: 59  DLTKVIALKMDFTA 72

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 25  ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL 84
            +K      L+ +  +        Y+ AI    + +         ++ L   RA   +  
Sbjct: 114 LVKADEMQRLRSQALDAFDGAD--YTAAITFLDKILEVC----VWDAELRELRAECFIKE 167

Query: 85  GNYRRAFTDAEEALKLCPTNV 105
           G  R+A +D + A KL   N 
Sbjct: 168 GEPRKAISDLKAASKLKSDNT 188

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            AI  L +   +E+          +   ++K+G+     AI     A        S+N+ 
Sbjct: 138 AAITFLDK--ILEVCVWDAELRELRAECFIKEGE--PRKAISDLKAASKLK----SDNTE 189

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            +   + +   LG++  + ++  E LKL   + + 
Sbjct: 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 20/99 (20%)

Query: 21  DAIAALKESAAIELKE------------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS 68
           DA +  +    ++ +               + + K  K    +AI   +  +        
Sbjct: 252 DATSKYES--VMKTEPSVAEYTVRSKERICHCFSKDEK--PVEAIRICSEVLQME----P 303

Query: 69  ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           +N     +RA   L+   Y  A  D E A +    + ++
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 23/106 (21%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAI-----------N 61
            A+  L +   I LK        ++G+  +K+GK    +A D + + +            
Sbjct: 55  AALPDLTK--VIALKMDFTAARLQRGHLLLKQGK--LDEAEDDFKKVLKSNPSEQEEKEA 110

Query: 62  QNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           ++ L  ++      ++A       +Y  A T  ++ L++C  + ++
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 54.6 bits (131), Expect = 4e-10
 Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 15/93 (16%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN------QNVLSDSEN-------SVL 73
           +  AA   K  GN   K+ K    +A+  Y  AI          L            +  
Sbjct: 175 RIGAADRRKMDGNSLFKEEK--LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232

Query: 74  YANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           + N A   + L  Y  A       L     N K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK 265

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 8e-10
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
           +++ A++LK +GN +       +++AI  Y  AI  +        V Y+N +   +  G+
Sbjct: 21  RQAYAVQLKNRGNHFFTAKN--FNEAIKYYQYAIELD----PNEPVFYSNISACYISTGD 74

Query: 87  YRRAFTDAEEALKLCPTNVK 106
             +      +AL++ P + K
Sbjct: 75  LEKVIEFTTKALEIKPDHSK 94

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 21  DAIAALKESAAIELKEKGNEYVKKG-----KKHYSDAIDCYTRAINQNVLSDSENSVLYA 75
           DA   L+E  +I L    N Y+        K++  +    + +A++ N     E    Y 
Sbjct: 261 DAQVLLQE--SINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN----PEYPPTYY 314

Query: 76  NRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           +R  +  +L +Y+ A  D ++A  L P NV 
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVY 345

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 14  ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL 73
            S  +       L+E+AA+ L   G  +  K      DA      +IN +          
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNN--LLDAQVLLQESINLH-----PTPNS 278

Query: 74  YANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           Y   A       N +  F   ++A+ L P     
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 22  AIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81
                K +       +    + + K  ++ AI   T+A       D  +       A + 
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEK--FNAAIKLLTKACEL----DPRSEQAKIGLAQLK 472

Query: 82  LLLGNYRRAFTDAEEALKLCPTN 104
           L +     A    E++  L  T 
Sbjct: 473 LQMEKIDEAIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +A    ++  A  L                K+GK  ++++   +     +          
Sbjct: 328 NAKEDFQK--AQSLNPENVYPYIQLACLLYKQGK--FTESEAFFNETKLKF----PTLPE 379

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           +    A +    G++  A    + A +L     K+
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +     ++  A++L          +G  Y       Y +A + + +A + N     EN  
Sbjct: 294 EFFKFFQK--AVDLNPEYPPTYYHRGQMYFILQD--YKNAKEDFQKAQSLN----PENVY 345

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            Y   A +    G +  +     E     PT  +V
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 12/106 (11%), Positives = 27/106 (25%), Gaps = 24/106 (22%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQN--------- 63
           ++ A   E                       +G   +  AI  Y  A             
Sbjct: 362 ESEAFFNE--TKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVG 417

Query: 64  ---VLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
              ++  +      +++    L    +  A     +A +L P + +
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENS-------VLYA 75
           K   A  +KEKG  Y K GK  Y  A+  Y + ++       LS+ E+          + 
Sbjct: 264 KLEQAAIVKEKGTVYFKGGK--YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 76  NRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           N A   L L  Y +A    ++AL L   N K
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEK 352

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 47  KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
           + Y+ A++C  +A+      DS N      R    LL+  +  A  D E+ L++ P N
Sbjct: 331 REYTKAVECCDKALG----LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 17/116 (14%)

Query: 6   DAESEPKTESEKADLDAIAALKES---AAIELKEKGNEYVKKGKKHYSDAIDCYTRAI-- 60
              S         D D      +     + +LK  GN + K     +  AI  YT+ +  
Sbjct: 195 KDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQN--WEMAIKKYTKVLRY 252

Query: 61  ---NQNVLSDSENS-------VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
              ++    D++ +           N     L + +++ A     EAL++ P+N K
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 3e-07
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           ++I   ++  AI+L          KG       +  Y +A+DCY   IN     D  N  
Sbjct: 24  ESIDLFEK--AIQLDPEESKYWLMKGKALYNLER--YEEAVDCYNYVINVI--EDEYNKD 77

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
           ++A +A     +         AE   KL   +
Sbjct: 78  VWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAI---NQNVLSDSE 69
            A   L+  ++  L         E G     K       AI+ +  A+    +   ++  
Sbjct: 459 LANEYLQ--SSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQNALLLVKKTQSNEKP 514

Query: 70  NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            +  +AN  H    L  Y  A     + L L   +  V
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +A     +  +  +  +         + +  +G+  +  AI  YT A            +
Sbjct: 391 EARRYFSK--SSTMDPQFGPAWIGFAHSFAIEGE--HDQAISAYTTAAR----LFQGTHL 442

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            Y      ++ LGN   A    + +  L   +  +
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 37  KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96
            G+ Y K     Y  AID   + +  +    + ++ ++   A V L       A T   E
Sbjct: 522 LGHAYRKLKM--YDAAIDALNQGLLLS----TNDANVHTAIALVYLHKKIPGLAITHLHE 575

Query: 97  ALKLCPTNV 105
           +L + P  +
Sbjct: 576 SLAISPNEI 584

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 16/105 (15%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L                          +    +A         +  V
Sbjct: 396 RLLPVLCQ--AHGLTPEQVVAIASHDGGKQALET--VQRLLPVLCQAHGLT----PQQVV 447

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN 117
             A+       L +     +  + AL     +  V + C G  P 
Sbjct: 448 AIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPA 492

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 12/93 (12%), Positives = 20/93 (21%), Gaps = 16/93 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L                          +    +A         +  V
Sbjct: 260 RLLPVLCQ--AHGLTPQQVVAIASNSGGKQALET--VQRLLPVLCQAHGLT----PQQVV 311

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105
             A+       L   +R      +A  L P  V
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 344

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 13/93 (13%), Positives = 20/93 (21%), Gaps = 16/93 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L                          +    +A         E  V
Sbjct: 328 RLLPVLCQ--AHGLTPQQVVAIASHDGGKQALET--VQRLLPVLCQAHGLT----PEQVV 379

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105
             A+       L   +R      +A  L P  V
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQV 412

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 13/93 (13%), Positives = 21/93 (22%), Gaps = 16/93 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
             +  L +  A  L           G              +    +A         +  V
Sbjct: 192 RLLPVLCQ--AHGLTPQQVVAIASNGGGKQALET--VQRLLPVLCQAHGLT----PQQVV 243

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105
             A+       L   +R      +A  L P  V
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 276

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 6/90 (6%)

Query: 16  EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYA 75
             A   A   L     + +                  +    +A         +  V  A
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHDGGKQALET--VQRLLPVLCQAHGLT----PQQVVAIA 110

Query: 76  NRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105
           +       L   +R      +A  L P  V
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQV 140

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 6/88 (6%)

Query: 18  ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR 77
             L     L     + +                  +    +A         E  V  A+ 
Sbjct: 127 PVLCQAHGLTPEQVVAIASHDGGKQALET--VQALLPVLCQAHGLT----PEQVVAIASN 180

Query: 78  AHVNLLLGNYRRAFTDAEEALKLCPTNV 105
                 L   +R      +A  L P  V
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQV 208

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 37  KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE 96
            G  Y        ++A   +TR+IN+    D   +V Y  R  +      Y  A  D +E
Sbjct: 43  IGCMYTILKN--MTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96

Query: 97  ALKLCPTN 104
           AL     N
Sbjct: 97  ALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           AI L  +G     K    +  A+D ++   + +       S +  N   +  +L N   A
Sbjct: 6   AISLWNEGVLAADKKD--WKGALDAFSAVQDPH-------SRICFNIGCMYTILKNMTEA 56

Query: 91  FTDAEEALKLCPTNV 105
                 ++       
Sbjct: 57  EKAFTRSINRDKHLA 71

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 22/101 (21%)

Query: 29  SAAIELKEK--------GNEYVKKGKKHYSDAIDCYTRAINQN------------VLSDS 68
           + +I   +         G  Y +  K  Y  AI     A+ Q             +    
Sbjct: 61  TRSINRDKHLAVAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 118

Query: 69  ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI 109
               +  N A +      +++A      A  +        I
Sbjct: 119 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 159

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +A        A+ L            N   ++G     +A+  Y +A+        E + 
Sbjct: 289 EAEDCYNT--ALRLCPTHADSLNNLANIKREQGN--IEEAVRLYRKALEVF----PEFAA 340

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
            ++N A V    G  + A    +EA+++ PT 
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            +        AI+            GN Y ++G+    +AI+ Y  A+        +   
Sbjct: 51  RSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQ--LQEAIEHYRHALRLK----PDFID 102

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            Y N A   +  G+   A      AL+  P    V
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            A+AA     A+ L              Y ++G      AID Y RAI            
Sbjct: 221 RAVAAYLR--ALSLSPNHAVVHGNLACVYYEQGL--IDLAIDTYRRAIELQ----PHFPD 272

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
            Y N A+     G+   A      AL+LCPT+
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +AI   +   A+ LK              V  G      A+  Y  A+  N     +   
Sbjct: 85  EAIEHYRH--ALRLKPDFIDGYINLAAALVAAGD--MEGAVQAYVSALQYN----PDLYC 136

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           + ++  ++   LG    A     +A++  P    
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            AI   ++  A+ L           GN   +     +  A+  Y RA++ +      ++V
Sbjct: 187 LAIHHFEK--AVTLDPNFLDAYINLGNVLKEARI--FDRAVAAYLRALSLS----PNHAV 238

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           ++ N A V    G    A      A++L P    
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           +A A   +  AIE +          G  +  +G+     AI  + +A+  +         
Sbjct: 153 EAKACYLK--AIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFEKAVTLD----PNFLD 204

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            Y N  +V      + RA      AL L P +  V
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 36  EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95
           E  +   + G   +  A     +   Q      +N+ +    + ++       R+   + 
Sbjct: 4   ELAHREYQAGD--FEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFST 57

Query: 96  EALKLCPTNV 105
            A+K  P   
Sbjct: 58  LAIKQNPLLA 67

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAIN-----QNVLSD 67
            A     +  A+ +         E G    + G+  +  A   +  A+       N ++ 
Sbjct: 177 LAERFFSQ--ALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFLDALEKIKAIGNEVTV 232

Query: 68  SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
            +   L  N  HV   L  Y  A     +AL L P N   
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            A   L +  A  L++         G+ +  + +  +  A+  Y  A            +
Sbjct: 109 HARRYLSK--ATTLEKTYGPAWIAYGHSFAVESE--HDQAMAAYFTAAQLM----KGCHL 160

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
                     L  N + A     +AL + P +  V
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 16  EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYA 75
           EK          +     L   G+   K  K  Y++A+D + +A+        +N+  Y+
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK--YAEALDYHRQALVLI----PQNASTYS 274

Query: 76  NRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105
              +++ L+GN+  A      AL L   + 
Sbjct: 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDT 304

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 38  GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97
           G      G   Y  A+  Y+         D        + A  +L LG+   A +    A
Sbjct: 59  GACRQSLGL--YEQALQSYSYGAL----MDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112

Query: 98  LKLCPTN 104
             L    
Sbjct: 113 RALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 15  SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY 74
           S+   L  +  L E    +L   G    + GK  + DA   +          D  ++  +
Sbjct: 2   SDGGTLAMLRGLSEDTLEQLYALGFNQYQAGK--WDDAQKIFQALCML----DHYDARYF 55

Query: 75  ANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
                    LG Y +A         +     + 
Sbjct: 56  LGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
           DA+   ++   ++L+          GN Y    ++     ++   + ++    S ++   
Sbjct: 106 DALRMYEK--ILQLEADNLAANIFLGNYYYLTAEQ-EKKKLETDYKKLS----SPTKMQY 158

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
                    L    Y +A    ++ +   P+ 
Sbjct: 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 22  AIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN 81
            +    E ++    E    Y K     Y  A   Y   + +       N       A + 
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRN--YDKAYLFYKELLQKA----PNNVDCLEACAEMQ 98

Query: 82  LLLGNYRRAFTDAEEALKLCPTNVKV 107
           +  G  + A    E+ L+L   N+  
Sbjct: 99  VCRGQEKDALRMYEKILQLEADNLAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 33  ELKEKGNEYVKKGKKHYSDAIDCYTRAINQN------------VLSDSENSVLYANRAHV 80
           E+ +K +  ++ G+     A+  + + I  N              +   +S L    A  
Sbjct: 6   EMLQKVSAAIEAGQ--NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 81  NLLLGNYRRAFTDAEEALKLCPTNVKV 107
                NY +A+   +E L+  P NV  
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDC 90

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELK--------EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            AI   +   A++          + G+ +  KG   +  AI    + I       + +  
Sbjct: 92  LAIQQYQA--AVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYMEKQIRPT----TTDPK 143

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           ++            Y +A +   + L+L P    
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 21  DAIAALKE-SAAIELKEK--------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS 71
            A   ++   + +   +         G   +KKG+   S AI  Y  A++++    +   
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ--DSLAIQQYQAAVDRD----TTRL 108

Query: 72  VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
            +Y          GN+  A    E+ ++   T+ K
Sbjct: 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 11/73 (15%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 32  IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF 91
           ++  +   E + +G     +A+      +    +   E    Y    +    LG++++A 
Sbjct: 1   MDQLKTIKELINQGD--IENALQALEEFLQTEPVGKDE---AYYLMGNAYRKLGDWQKAL 55

Query: 92  TDAEEALKLCPTN 104
            + + A++L P +
Sbjct: 56  NNYQSAIELNPDS 68

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 12  KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS 71
           + +  + +L  +    E A +         +  G +   DA   +    ++     S   
Sbjct: 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC----SPTL 200

Query: 72  VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           +L   +A  ++  G +  A    +EAL     + + 
Sbjct: 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 14  ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL 73
           + +       +  +  +     E+G   +K G      A  C+ +A+ +      +N   
Sbjct: 119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEF 174

Query: 74  YANRAHVNLLLGNYRR---AFTDAEEALKLCPTN 104
            +  A  +  L N+     A     +A++L P N
Sbjct: 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 4/59 (6%)

Query: 46  KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
           K+ +  A D Y  A          +     +     L L    +A    E  ++     
Sbjct: 83  KEQFQQAADLYAVAFA----LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 2   ALWMDAESEPKTESEKADLDAIAALKESAAI------ELKEKGNEYVKKGKKHYSDAIDC 55
                 E+E  + +    +++ A LK+  AI      ++     ++  KG+    +A   
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGR--IEEAEVF 58

Query: 56  YTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           +          D  N       A +  +   +++A      A  L   +   
Sbjct: 59  FRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 16/94 (17%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            A+A   +  A+EL           GN YV K    Y +A D + +A+        EN  
Sbjct: 75  RALAFYDK--ALELDSSAATAYYGAGNVYVVKEM--YKEAKDMFEKALRAG----MENGD 126

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK 106
           L+     V + L   + A    + A++L   + +
Sbjct: 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 36.3 bits (85), Expect = 9e-04
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 16/90 (17%)

Query: 21  DAIAALKESAAIELKE--------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
            A+  L+   A+EL E         G     +G     +A+  +     Q+      ++ 
Sbjct: 143 LALPYLQR--AVELNENDTEARFQFGMCLANEGM--LDEALSQFAAVTEQD----PGHAD 194

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCP 102
            + N         N  +A    ++A+ + P
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAIDIQP 224

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 27  KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN 86
            E++ +EL  +G    K G       +  +  A+          S +Y+   +    L +
Sbjct: 5   MEASCLELALEGERLCKSGD--CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD 62

Query: 87  YRRAFTDAEEALKLC 101
           Y +A       L L 
Sbjct: 63  YAKALEYHHHDLTLA 77

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 9/95 (9%), Positives = 24/95 (25%), Gaps = 16/95 (16%)

Query: 21  DAIAALKESAAIELKEK--------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV 72
             +  L+   A+  + +         +  +  G    +       R +         +  
Sbjct: 7   RELLQLRA--AVRHRPQDFVAWLMLADAELGMGD--TTAGEMAVQRGLAL----HPGHPE 58

Query: 73  LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
             A    V      +  A    ++A    P +  +
Sbjct: 59  AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 4/57 (7%)

Query: 49  YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV 105
               +     A+        ++ V +   A   L +G+        +  L L P + 
Sbjct: 5   GPRELLQLRAAVRHR----PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP 57

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 11/94 (11%), Positives = 19/94 (20%), Gaps = 12/94 (12%)

Query: 20  LDAIAALKESAAIE------LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVL 73
                 +     I       L        + G   Y DA   +          D  +S  
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX--YEDAHXVFQALCVL----DHYDSRF 57

Query: 74  YANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
           +         +G Y  A         +     + 
Sbjct: 58  FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%)

Query: 48  HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
                +    + +    L+D E + L   R  +   LG    A  D  +AL + P   +V
Sbjct: 20  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 5   MDAESEPKT---ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN 61
           +  E E      E ++  L  + A  +    E +EK  + +++  +  S+ ++   +   
Sbjct: 80  LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE---KNKI 136

Query: 62  QNVLSDSENSVLYANR 77
            N ++D      Y   
Sbjct: 137 NNRIADKA---FYQQP 149

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 48  HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
             + A+  Y +AI    L   + +  Y         LG YR+A       +K  P +
Sbjct: 5   LEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.67
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.64
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.6
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.59
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.59
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.57
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.54
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.53
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.52
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.51
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.5
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.47
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.47
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.47
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.46
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.46
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.45
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.44
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.43
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.43
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.41
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.4
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.4
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.39
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.38
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.38
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.36
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.36
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.35
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.34
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.34
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.33
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.32
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.31
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.3
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.3
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.3
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.3
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.3
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.28
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.27
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.26
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.25
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.21
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.16
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.15
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.15
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.13
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.12
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.12
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.11
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.1
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.1
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.04
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.03
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.02
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.02
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.01
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.0
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.96
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.94
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.92
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.88
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.88
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.88
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.87
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.85
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.85
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.85
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.81
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.81
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.81
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.62
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.58
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.57
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.56
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.56
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.51
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.48
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.45
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.42
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.27
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.23
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.22
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.04
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.02
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.91
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.82
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.7
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.46
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.28
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.08
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.96
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.66
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.41
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.28
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.18
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.99
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.19
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.1
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.01
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.69
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.52
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.42
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.55
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	91.32
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.08
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.91
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.75
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.69
2vkj_A	106	TM1634; membrane protein, TPR motif joint center f	90.61
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	89.91
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	89.7
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	89.65
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.33
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	88.1
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	87.99
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.48
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.22
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	86.98
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.84
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	86.63
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	85.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	85.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.77
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	82.75
3myv_A	454	SUSD superfamily protein; RAGB, SUSD and hypotheti	82.57
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	81.66
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	81.65
3lew_A	495	SUSD-like carbohydrate binding protein; structural	81.65
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	81.04
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	80.95
3kez_A	461	Putative sugar binding protein; structural genomic	80.86
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	80.82
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	80.59
3mcx_A	477	SUSD superfamily protein; structural genomics, joi	80.58

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=1.2e-20  Score=117.31  Aligned_cols=88  Identities=35%  Similarity=0.525  Sum_probs=73.5

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +..++|+.++.+.++|+.+++.|  +|++|+..|+++|++    +|.++.+++++|.|+..+|++++|+.+++++++++|
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   78 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKG--DYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS   78 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence            34578888888888888888887  888888888888888    888888888888888888888888888888888888


Q ss_pred             CCHHHHHHhhccCc
Q 033440          103 TNVKVVILCSGSHP  116 (119)
Q Consensus       103 ~~~~a~~~~a~~~~  116 (119)
                      +++.+|+.+|.++.
T Consensus        79 ~~~~a~~~lg~~~~   92 (126)
T 4gco_A           79 KFIKGYIRKAACLV   92 (126)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHH
Confidence            88888888888764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.80  E-value=1e-18  Score=108.51  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=92.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..+++++.++|.++..+..+|.+++..|  ++++|+..|+++|++    +|+++.+++++|.++..+|++++|+.+
T Consensus        30 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~~  103 (126)
T 4gco_A           30 PTAMRHYNEAVKRDPENAILYSNRAACLTKLM--EFQRALDDCDTCIRL----DSKFIKGYIRKAACLVAMREWSKAQRA  103 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc--cHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence            56788899999999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|++..++..++.++
T Consensus       104 ~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          104 YEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999998875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.77  E-value=5.8e-19  Score=113.23  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=84.6

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +.++..++|+++.+++.+|..+++.|  +|++|+..|++++.+    +|.++.+++++|.|+..+|+|++|+..|+++++
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKG--RIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34445678999999999999999998  999999999999999    999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHhhccCcC
Q 033440          100 LCPTNVKVVILCSGSHPN  117 (119)
Q Consensus       100 l~p~~~~a~~~~a~~~~~  117 (119)
                      ++|+++.+|+++|.+|..
T Consensus        99 l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHHH
Confidence            999999999999998753

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.77  E-value=2.2e-18  Score=109.60  Aligned_cols=98  Identities=15%  Similarity=0.044  Sum_probs=89.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+..+...+|+.+..+..+|..|++.|  +|++|+..|+++|++    +|+++.+++++|.++..+|++++|+.
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--EYDLAKKYICTYINV----QERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCchHHHHH
Confidence            346677777888888999999999999999988  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++++|+++.+++.+|.++.
T Consensus        87 ~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           87 CYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999998764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=7.1e-17  Score=107.32  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=93.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHH----------------HHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKE----------------KGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN   76 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   76 (119)
                      .++++..++++..++|+++..+..                +|.++...|  ++++|+..|++++++    +|+++.++++
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~   93 (208)
T 3urz_A           20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--NYDKAYLFYKELLQK----APNNVDCLEA   93 (208)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----CCCCHHHHHH
Confidence            457888899999999999999999                999999999  999999999999999    9999999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           77 RAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        77 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +|.++..+|++++|+..++++++++|+++.+++.+|.+|+
T Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=1.9e-17  Score=102.63  Aligned_cols=84  Identities=24%  Similarity=0.291  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH-
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV-  105 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~-  105 (119)
                      .++.+.++.++|+.+++.|  +|++|+..|+++|++    +|+++.++.++|.||..+|+|++|+.+++++++++|++. 
T Consensus         4 ~~d~A~a~~~lG~~~~~~~--~~~~A~~~y~~Al~~----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQK--DFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence            3567889999999999999  999999999999999    999999999999999999999999999999999998764 


Q ss_pred             ------HHHHHhhccCc
Q 033440          106 ------KVVILCSGSHP  116 (119)
Q Consensus       106 ------~a~~~~a~~~~  116 (119)
                            .+|+++|.++.
T Consensus        78 ~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence                  57777776653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=4.4e-17  Score=103.53  Aligned_cols=94  Identities=11%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..+.++..++|++...+..+|..++..|  +|++|+..|++++.+    +|.++.+++++|.|+..+|++++|+..|+++
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSG--XYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3577788889999999999999999988  999999999999999    9999999999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHhhccCcC
Q 033440           98 LKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~~  117 (119)
                      +.++|+++.+++.+|.++..
T Consensus        82 l~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHH
T ss_pred             HhcCCCCchHHHHHHHHHHH
Confidence            99999999999999988743

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=6.6e-17  Score=99.02  Aligned_cols=94  Identities=14%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++..++|+++..+..+|.+++..|  +|++|+..|++++.+    +|+++.+++++|.++..+|++++|+..+
T Consensus        22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~   95 (126)
T 3upv_A           22 NAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALETL   95 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            4455555555566666666666666666655  666666666666666    5666666666666666666666666666


Q ss_pred             HHHHhhC------CCCHHHHHHhhcc
Q 033440           95 EEALKLC------PTNVKVVILCSGS  114 (119)
Q Consensus        95 ~~al~l~------p~~~~a~~~~a~~  114 (119)
                      +++++++      |++..++..++.+
T Consensus        96 ~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           96 DAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHhCcccCCchhHHHHHHHHHHH
Confidence            6666666      5555555555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=9.4e-17  Score=102.02  Aligned_cols=98  Identities=17%  Similarity=0.120  Sum_probs=91.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++++.+++++.++|+++.++..+|.++...|  ++++|+..|++++++    +|+++.+++++|.++..+|++.+|+.
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEE--NTDKAVECYRRSVEL----NPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--chHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            357888999999999999999999999999999  999999999999999    99999999999999999999998887


Q ss_pred             H-HHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 D-AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~-~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      . ++++++++|+++.++..++.++.
T Consensus       121 ~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          121 YWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            6 58999999999999998887764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=8.1e-17  Score=101.03  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             hHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           19 DLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+.++..++|++...+..+|..+++.|  +|++|+..|++++..    +|.++.+++++|.++..+|++++|+..+++++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAG--KWDDAQKIFQALCML----DHYDARYFLGLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            445556678888888888888888888  888888888888888    88888888888888888888888888888888


Q ss_pred             hhCCCCHHHHHHhhccCc
Q 033440           99 KLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~  116 (119)
                      .++|+++.+++.+|.++.
T Consensus        80 ~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           80 LMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHCTTCTHHHHHHHHHHH
T ss_pred             hcCCCCcHHHHHHHHHHH
Confidence            888888888888887764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.68  E-value=3.4e-16  Score=100.25  Aligned_cols=87  Identities=13%  Similarity=0.036  Sum_probs=83.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++..++|.++..|..+|.+++..|  +|++|+..|++++.+    +|+++.+++++|.|+..+|++++|+.
T Consensus        52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~Ai~~~~~al~l----~P~~~~~~~~lg~~~~~lg~~~eA~~  125 (151)
T 3gyz_A           52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE--QFQQAADLYAVAFAL----GKNDYTPVFHTGQCQLRLKAPLKAKE  125 (151)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            356788899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCH
Q 033440           93 DAEEALKLCPTNV  105 (119)
Q Consensus        93 ~~~~al~l~p~~~  105 (119)
                      .+++++++.|+..
T Consensus       126 ~~~~al~l~~~~~  138 (151)
T 3gyz_A          126 CFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHCCCHH
T ss_pred             HHHHHHHhCCCHH
Confidence            9999999999875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.67  E-value=2.7e-16  Score=101.61  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc------------hHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE------------NSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+..+..+|+.+++.|  +|++|+..|+++|++    +|+            ++.+|.|+|.|+.++|+|++|+.+|+++
T Consensus        10 ~a~~~~~~G~~l~~~g--~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAG--EYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6888999999999999  999999999999999    665            3459999999999999999999999999


Q ss_pred             Hhh-------CCCCHHHH----HHhhccCc
Q 033440           98 LKL-------CPTNVKVV----ILCSGSHP  116 (119)
Q Consensus        98 l~l-------~p~~~~a~----~~~a~~~~  116 (119)
                      |++       +|++.++|    +++|.++.
T Consensus        84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~  113 (159)
T 2hr2_A           84 LHYFNRRGELNQDEGKLWISAVYSRALALD  113 (159)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccccCCCchHHHHHHHHHhHHHHHH
Confidence            999       99999999    99998874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.66  E-value=3.3e-16  Score=99.91  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=37.3

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      +|..+..+.++|.++++.|  +|++|+..++++|.+    +|.++.+++++|.++..+|++++|+.++++++.++|++.
T Consensus        59 ~~~~~~~~~nla~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIG--DLHEAEETSSEVLKR----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            4444445555555555544  555555555555555    555555555555555555555555555555555555444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=9.7e-16  Score=97.87  Aligned_cols=94  Identities=12%  Similarity=0.077  Sum_probs=64.2

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++..++|.++..+..+|.+++..|  +|++|+..|++++.+    +|+++.+++++|.++..+|++++|+..
T Consensus        28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~  101 (164)
T 3sz7_A           28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASG--QHEKAAEDAELATVV----DPKYSKAWSRLGLARFDMADYKGAKEA  101 (164)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            34556666666667777777777777777766  677777777777777    666677777777777777777777777


Q ss_pred             HHHHHhhCCCCHHHHHHhhc
Q 033440           94 AEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~  113 (119)
                      ++++++++|++..+|+.++.
T Consensus       102 ~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A          102 YEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHH
Confidence            77777777766666655554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=7.4e-16  Score=98.42  Aligned_cols=85  Identities=28%  Similarity=0.303  Sum_probs=80.7

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ++..+..+..+|..++..|  +|++|+..|++++.+    +|.++.+++++|.|+..+|+|++|+.+++++++++|+++.
T Consensus         7 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   80 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARK--EYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK   80 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            4567899999999999999  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcC
Q 033440          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      +|+.+|.++..
T Consensus        81 ~~~~lg~~~~~   91 (164)
T 3sz7_A           81 AWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.5e-15  Score=92.86  Aligned_cols=84  Identities=26%  Similarity=0.376  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      |..+..+..+|..++..|  +|++|+..|++++.+    +|.++.+++++|.|+..+|++++|+.+++++++++|+++.+
T Consensus         1 p~~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~   74 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA   74 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence            356889999999999999  999999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHhhccCcC
Q 033440          108 VILCSGSHPN  117 (119)
Q Consensus       108 ~~~~a~~~~~  117 (119)
                      ++.+|.++..
T Consensus        75 ~~~lg~~~~~   84 (126)
T 3upv_A           75 YIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=2.6e-15  Score=100.28  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=92.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++..++|+++..+..+|..+...|  ++++|+..|++++++    + +++.+++++|.++..+|++++|+.
T Consensus       100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~-~~~~~~~~la~~~~~~g~~~~A~~  172 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLG--ERDKAEASLKQALAL----E-DTPEIRSALAELYLSMGRLDEALA  172 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----C-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhc----c-cchHHHHHHHHHHHHcCCHHHHHH
Confidence            346778889999999999999999999999999  999999999999999    8 899999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|+++.+++.+|.++..
T Consensus       173 ~~~~al~~~P~~~~~~~~la~~~~~  197 (217)
T 2pl2_A          173 QYAKALEQAPKDLDLRVRYASALLL  197 (217)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=8e-16  Score=102.80  Aligned_cols=97  Identities=10%  Similarity=0.040  Sum_probs=76.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh---------
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---------   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---------   84 (119)
                      ++++..++++..++|+++.++..+|..+.+.|  ++++|+..|++++++    +|+++.+++++|.++..+         
T Consensus        22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~~   95 (217)
T 2pl2_A           22 DAALTLFERALKENPQDPEALYWLARTQLKLG--LVNPALENGKTLVAR----TPRYLGGYMVLSEAYVALYRQAEDRER   95 (217)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence            45667777777778888888888888888877  788888888888888    788888888888888888         


Q ss_pred             --cCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           85 --GNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        85 --~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                        |++++|+..++++++++|+++.+++.+|.++.
T Consensus        96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~  129 (217)
T 2pl2_A           96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA  129 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence              88888888888888888888888877777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.64  E-value=1e-15  Score=118.65  Aligned_cols=95  Identities=13%  Similarity=0.086  Sum_probs=52.1

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++++++|+++.++.++|..+.+.|  ++++|+..|+++|++    +|+++.+++++|.++..+|++++|+..|
T Consensus        27 eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--~~~eA~~~~~~Al~l----~P~~~~a~~nLg~~l~~~g~~~~A~~~~  100 (723)
T 4gyw_A           27 EAVRLYRKALEVFPEFAAAHSNLASVLQQQG--KLQEALMHYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGALQCY  100 (723)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4445555555555555555555555555555  555555555555555    5555555555555555555555555555


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++|++..+|+++|.+|
T Consensus       101 ~kAl~l~P~~~~a~~~Lg~~~  121 (723)
T 4gyw_A          101 TRAIQINPAFADAHSNLASIH  121 (723)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHH
Confidence            555555555555555555544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.64  E-value=3e-15  Score=88.94  Aligned_cols=81  Identities=28%  Similarity=0.463  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC-----
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN-----  104 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-----  104 (119)
                      .+..+..+|..++..|  +|++|+..|++++.+    +|.++.+++++|.|+..+|++++|+..++++++++|++     
T Consensus         3 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQG--LYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            4678999999999999  999999999999999    99999999999999999999999999999999999999     


Q ss_pred             -HHHHHHhhccCc
Q 033440          105 -VKVVILCSGSHP  116 (119)
Q Consensus       105 -~~a~~~~a~~~~  116 (119)
                       ..+++.+|.++.
T Consensus        77 ~~~~~~~~~~~~~   89 (111)
T 2l6j_A           77 RSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence             899999887763

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=5.7e-16  Score=112.27  Aligned_cols=97  Identities=9%  Similarity=-0.017  Sum_probs=74.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhc-HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH-YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .++++..+++++.++|++..+|..+|.++...|  + +++|+..|+++|.+    +|+++.+++++|.++..+|++++|+
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--~d~~eAl~~~~~al~l----~P~~~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEE----QPKNYQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHccCHHHHH
Confidence            566777777777778877788888888877777  6 77888888887777    7777777777777777777777777


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .+|+++++++|++..+|+.+|.++
T Consensus       187 ~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          187 EFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCHHHHHHHHHHH
Confidence            777777777777777777777665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.63  E-value=7e-15  Score=93.66  Aligned_cols=51  Identities=29%  Similarity=0.305  Sum_probs=48.5

Q ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|.++.+++++|.|+.++|+|++|+.+|+++++++|+++.+|+++|.++..
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  109 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIA  109 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999998753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=1.4e-15  Score=110.20  Aligned_cols=99  Identities=15%  Similarity=0.015  Sum_probs=92.4

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+++++.++|++..+|..+|.++...|  ++++|+..|+++|++    +|.++.+++++|.++..+|++++|+.
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g--~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~  221 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR--DPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQ  221 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHH
Confidence            457888999999999999999999999999998  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++++++++|++..+|+.+|.++..
T Consensus       222 ~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          222 YVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988753

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=5.8e-15  Score=89.64  Aligned_cols=91  Identities=14%  Similarity=0.099  Sum_probs=84.6

Q ss_pred             ChhhHHhHHHHHHh---cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           13 TESEKADLDAIAAL---KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .++++..+++++.+   +|+.+..+..+|.+++..|  +|++|+..|++++++    +|+++.+++++|.|+..+|++++
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG--EYRKAEAVLANGVKQ----FPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHcCCHHH
Confidence            34677889999999   7999999999999999999  999999999999999    99999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHH
Q 033440           90 AFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~  109 (119)
                      |+..+++++..+|+++....
T Consensus        80 A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHH
Confidence            99999999999999877543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=2e-15  Score=117.03  Aligned_cols=98  Identities=20%  Similarity=0.183  Sum_probs=94.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++++++|+++.++.++|+++...|  ++++|+..|+++|++    +|+++.+++++|.++..+|++++|+.
T Consensus        59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g--~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~~~eAi~  132 (723)
T 4gyw_A           59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ--DVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIA  132 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            457888999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .|+++++++|++..+++++|.++.
T Consensus       133 ~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A          133 SYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHhhhhhHHH
Confidence            999999999999999999998874

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=3e-15  Score=94.94  Aligned_cols=89  Identities=18%  Similarity=0.114  Sum_probs=83.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++..++|.++..|..+|.++...|  +|++|+..|++++.+    +|+++.+++++|.|+..+|++++|+.
T Consensus        37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--QYDLAIHSYSYGAVM----DIXEPRFPFHAAECLLQXGELAEAES  110 (148)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            356778899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHH
Q 033440           93 DAEEALKLCPTNVKV  107 (119)
Q Consensus        93 ~~~~al~l~p~~~~a  107 (119)
                      .++++++++|+++..
T Consensus       111 ~~~~al~~~p~~~~~  125 (148)
T 2vgx_A          111 GLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHCcCCCcc
Confidence            999999999987654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.62  E-value=2.8e-15  Score=96.77  Aligned_cols=91  Identities=14%  Similarity=0.107  Sum_probs=82.3

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcH----------HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHY----------SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l   84 (119)
                      .+++.++.+..++|++++.|.+.|.++...+  ++          ++|+..|+++|++    +|+++.+++++|.+|..+
T Consensus        20 eA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~--~~~~g~~al~~~~eAi~~le~AL~l----dP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           20 QIRQDAENTYKSNPLDADNLTRWGGVLLELS--QFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc--ccchhhhhHhHHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHh
Confidence            5566788888999999999999999999987  65          5999999999999    999999999999999988


Q ss_pred             c-----------CHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           85 G-----------NYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        85 ~-----------~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      |           ++++|+..|++|++++|++...+..+
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5           89999999999999999998766554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.62  E-value=2.5e-15  Score=94.18  Aligned_cols=92  Identities=18%  Similarity=0.145  Sum_probs=85.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++.+...+|.++..+..+|.++...|  +|++|+..|++++.+    +|+++.+++++|.|+..+|++++|+.
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--LYEQALQSYSYGALM----DINEPRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            346778889999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHH
Q 033440           93 DAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~  110 (119)
                      .++++++++|+++.....
T Consensus       108 ~~~~al~~~p~~~~~~~~  125 (142)
T 2xcb_A          108 GFYSARALAAAQPAHEAL  125 (142)
T ss_dssp             HHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHhCCCCcchHHH
Confidence            999999999988655443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=2.1e-15  Score=97.34  Aligned_cols=93  Identities=17%  Similarity=0.063  Sum_probs=73.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +.....+..+..++|.+...+..+|.+++..|  ++++|+..|++++++    +|.++.+++++|.++..+|++++|+..
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMG--EHDKAIEAYEKTISI----KPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhC--CchhHHHHHHHHHHh----cchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            34556677777788888888888888888887  888888888888888    888888888888888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHhhcc
Q 033440           94 AEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ++++++++|++  +.+.+|.+
T Consensus       164 ~~~al~~~p~~--a~~~lali  182 (184)
T 3vtx_A          164 FKKALEKEEKK--AKYELALV  182 (184)
T ss_dssp             HHHHHHTTHHH--HHHCSCCS
T ss_pred             HHHHHhCCccC--HHHHHHhh
Confidence            88888888865  44555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=3.5e-15  Score=91.68  Aligned_cols=85  Identities=14%  Similarity=0.021  Sum_probs=47.7

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++...+|+++.++..+|.++...|  ++++|+..|++++++    +|+++.+++++|.++..+|++++|+..+
T Consensus        35 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~la~~~~~~g~~~~A~~~~  108 (121)
T 1hxi_A           35 EAALAFEAVCQKEPEREEAWRSLGLTQAENE--KDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALASL  108 (121)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4445555555556666666666666666655  666666666666666    5666666666666666666666666666


Q ss_pred             HHHHhhCCCCH
Q 033440           95 EEALKLCPTNV  105 (119)
Q Consensus        95 ~~al~l~p~~~  105 (119)
                      +++++++|++.
T Consensus       109 ~~al~~~P~~~  119 (121)
T 1hxi_A          109 RAWLLSQPQYE  119 (121)
T ss_dssp             HHHHC------
T ss_pred             HHHHHhCcCCC
Confidence            66666665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.60  E-value=2.1e-15  Score=107.19  Aligned_cols=93  Identities=23%  Similarity=0.243  Sum_probs=77.0

Q ss_pred             HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---------------HHHHHHHHHHHH
Q 033440           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHVNL   82 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~~~   82 (119)
                      ..++.....+|..+..+..+|+.+++.|  +|++|+..|++++.+    .|.+               ..++.++|.|+.
T Consensus       134 ~~~~~a~~~~p~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  207 (336)
T 1p5q_A          134 ESWEMNSEEKLEQSTIVKERGTVYFKEG--KYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHL  207 (336)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhcCCHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555667888888888888888888  888888888888888    7766               588888888888


Q ss_pred             HhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           83 LLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++|+|++|+..|+++++++|+++.+++++|.+|.
T Consensus       208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  241 (336)
T 1p5q_A          208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  241 (336)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            8888888888888888888888888888888764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.60  E-value=4.3e-15  Score=91.48  Aligned_cols=83  Identities=33%  Similarity=0.458  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      +..+..+..+|..++..|  +|++|+..|.+++..    +|.++.+++++|.|+..+|++++|+..++++++++|+++.+
T Consensus         6 ~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~   79 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   79 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cccHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhh----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH
Confidence            345666777777777777  777777777777777    77777777777777777777777777777777777777777


Q ss_pred             HHHhhccCc
Q 033440          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      ++.+|.++.
T Consensus        80 ~~~l~~~~~   88 (137)
T 3q49_B           80 HFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.60  E-value=3e-14  Score=84.67  Aligned_cols=97  Identities=16%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++.+...+|.++..+..+|..++..|  ++++|+..+.+++..    .|.++.++.++|.++..+|++++|+.
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~   93 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--DYQKAYEDGCKTVDL----KPDWGKGYSRKAAALEFLNRFEEAKR   93 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            356778888888999999999999999999998  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .++++++++|+++.++..++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           94 TYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999887653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.59  E-value=1.9e-15  Score=111.41  Aligned_cols=95  Identities=25%  Similarity=0.239  Sum_probs=84.2

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---------------HHHHHHHHHHH
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---------------SVLYANRAHVN   81 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~a~~~   81 (119)
                      +..++.....+|..+..+..+|+.+++.|  +|++|+..|++++.+    .|.+               ..+++++|.|+
T Consensus       254 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          254 KESWEMDTKEKLEQAAIVKEKGTVYFKGG--KYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcCHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566778899999999999999988  999999999999999    7766               68999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           82 LLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++|+|++|+.+|+++++++|+++.+|+++|.+|..
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~  363 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL  363 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988753

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.59  E-value=2.1e-14  Score=82.52  Aligned_cols=82  Identities=27%  Similarity=0.419  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ..+..+..+|..++..|  ++++|+..|.+++..    .|.++.+++++|.++..+|++++|+..++++++++|++..++
T Consensus         7 ~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~   80 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK   80 (91)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence            46788999999999999  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHhhccCc
Q 033440          109 ILCSGSHP  116 (119)
Q Consensus       109 ~~~a~~~~  116 (119)
                      ..+|.++.
T Consensus        81 ~~l~~~~~   88 (91)
T 1na3_A           81 QNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.58  E-value=5.9e-15  Score=98.28  Aligned_cols=96  Identities=14%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-------HHHHHHHHHHHHhcC
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-------VLYANRAHVNLLLGN   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~a~~~~~l~~   86 (119)
                      ++++..++++...+|+++..+..+|.++...|  ++++|+..|++++.+    .|+++       .++.++|.++..+|+
T Consensus        59 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~  132 (228)
T 4i17_A           59 KEAADYFDIAIKKNYNLANAYIGKSAAYRDMK--NNQEYIATLTEGIKA----VPGNATIEKLYAIYYLKEGQKFQQAGN  132 (228)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence            34555566666666666666666666666666  666666666666666    66655       446666666666666


Q ss_pred             HHHHHHHHHHHHhhCCC--CHHHHHHhhccC
Q 033440           87 YRRAFTDAEEALKLCPT--NVKVVILCSGSH  115 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~--~~~a~~~~a~~~  115 (119)
                      +++|+..++++++++|+  ++.+++.+|.++
T Consensus       133 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A          133 IEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            66666666666666666  666666666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.58  E-value=3.9e-14  Score=85.44  Aligned_cols=97  Identities=22%  Similarity=0.168  Sum_probs=87.0

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++...+|+.+..+..+|..++..|  ++++|+..+.+++..    .|.++.+++.+|.++..+|++++|+..
T Consensus        29 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~  102 (131)
T 2vyi_A           29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLG--NYAGAVQDCERAICI----DPAYSKAYGRMGLALSSLNKHVEAVAY  102 (131)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--chHHHHHHHHHHHhc----CccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45677788888888888999999999999988  999999999999999    899999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|++..+++.+|.++.
T Consensus       103 ~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A          103 YKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCccchHHHHHHHHHHH
Confidence            99999999999999998887763

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=5.2e-15  Score=89.99  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=89.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++...+|.+...+..+|.+++..|  ++++|+..+++++..    .|.++.+++++|.++..+|++++|+.
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~  105 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--EFQLALKDCEECIQL----EPTFIKGYTRKAAALEAMKDYTKAMD  105 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHHhhHHHHHH
Confidence            346777888888889989999999999999988  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|.+..+++.++.++..
T Consensus       106 ~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A          106 VYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999998887643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.57  E-value=2.7e-14  Score=87.67  Aligned_cols=78  Identities=15%  Similarity=0.126  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      .+..+|..+++.|  ++++|+..|++++..    +|+++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus        19 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           19 NPMEEGLSMLKLA--NLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4678999999999  999999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             ccCc
Q 033440          113 GSHP  116 (119)
Q Consensus       113 ~~~~  116 (119)
                      .++.
T Consensus        93 ~~~~   96 (121)
T 1hxi_A           93 VSHT   96 (121)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.57  E-value=2.6e-14  Score=101.49  Aligned_cols=97  Identities=19%  Similarity=0.194  Sum_probs=89.3

Q ss_pred             hhhHHhHHHHHHhcHHH---------------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440           14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA   78 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a   78 (119)
                      ++++..+.++..++|..               +..+.++|.++++.|  +|++|+..|++++++    +|+++.+++++|
T Consensus       164 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg  237 (336)
T 1p5q_A          164 KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--AFSAAIESCNKALEL----DSNNEKGLSRRG  237 (336)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHH
Confidence            35666777777777776               799999999999999  999999999999999    999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++..+|++++|+.+++++++++|++..+++.++.++.
T Consensus       238 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          238 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=3.6e-14  Score=91.47  Aligned_cols=102  Identities=13%  Similarity=0.143  Sum_probs=78.0

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----------------------------
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----------------------------   65 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------------------------   65 (119)
                      ++++..++++++++|+++.++..+|.+++..|  ++++|+..+.+++...|.                            
T Consensus        22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a   99 (184)
T 3vtx_A           22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRA   99 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666677777777777777777777777766  666666666666554221                            


Q ss_pred             --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                        ..|.++.++..+|.++..+|++++|+..++++++++|+++.+|+.+|.+|..
T Consensus       100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A          100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence              1777888889999999999999999999999999999999999999988753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=4.2e-14  Score=94.15  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             hhhHHhHHHHHHhcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           14 ESEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++++..++++..++| .+...+..+|.+++..|  ++++|+..|.+++..    +|.++.++.++|.++..+|++++|+.
T Consensus        24 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~   97 (228)
T 4i17_A           24 AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--KYKEAADYFDIAIKK----NYNLANAYIGKSAAYRDMKNNQEYIA   97 (228)
T ss_dssp             HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TCSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--cHHHHHHHHHHHHHh----CcchHHHHHHHHHHHHHcccHHHHHH
Confidence            467788899989888 78889999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCH-------HHHHHhhccCc
Q 033440           93 DAEEALKLCPTNV-------KVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~-------~a~~~~a~~~~  116 (119)
                      .++++++++|+++       .+|+.+|.++.
T Consensus        98 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  128 (228)
T 4i17_A           98 TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ  128 (228)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999       66888887653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.3e-13  Score=92.02  Aligned_cols=96  Identities=26%  Similarity=0.352  Sum_probs=87.0

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...++.+...+|..+..+..+|..++..|  ++++|+..|++++..    .|.++.++.++|.++..+|++++|+..++
T Consensus       124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKS--DWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            444555555689999999999999999998  999999999999999    99999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHhhccCcC
Q 033440           96 EALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++|+++.+++.+|.++..
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHH
Confidence            9999999999999999988743

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.54  E-value=2.9e-14  Score=91.63  Aligned_cols=99  Identities=19%  Similarity=0.233  Sum_probs=90.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH-HHHhcCH--HH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV-NLLLGNY--RR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~-~~~l~~~--~~   89 (119)
                      .++++..+..+...+|.++..+..+|..++..|  ++++|+..|.+++.+    .|.++.++.++|.+ +...|++  ++
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQN--DYSNSLLAYRQALQL----RGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            345667888888999999999999999999999  999999999999999    99999999999999 8899999  99


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+..++++++++|+++.+++.+|.++..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFM  127 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999987743

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=1.8e-13  Score=81.84  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=89.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|.....+..+|..++..|  ++++|+..+.+++..    .|.++.++.++|.++..+|++++|+..
T Consensus        26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~   99 (125)
T 1na0_A           26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEY   99 (125)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            45677788888888988999999999999998  999999999999999    899999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|+++.++..+|.++.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A          100 YQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHH
Confidence            99999999999999999987754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.53  E-value=1.3e-14  Score=85.57  Aligned_cols=84  Identities=19%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC--CH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT--NV  105 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~  105 (119)
                      |+++..+..+|..++..|  ++++|+..|++++..    .|.++.+++++|.++..+|++++|+..++++++++|.  +.
T Consensus         3 p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAG--NYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred             CCcHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence            344555666777777766  777777777777777    6777777777777777777777777777777777777  77


Q ss_pred             HHHHHhhccCcC
Q 033440          106 KVVILCSGSHPN  117 (119)
Q Consensus       106 ~a~~~~a~~~~~  117 (119)
                      .+++.+|.++..
T Consensus        77 ~~~~~l~~~~~~   88 (112)
T 2kck_A           77 DVWAAKADALRY   88 (112)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH
Confidence            777777766543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.6e-13  Score=84.81  Aligned_cols=95  Identities=18%  Similarity=0.169  Sum_probs=71.7

Q ss_pred             hhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      +++..++.+...+|+.   ...+..+|.+++..|  +|++|+..+.+++..    .|.++.+++++|.++..+|++++|+
T Consensus        46 ~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A           46 GALAAYTQALGLDATPQDQAVLHRNRAACHLKLE--DYDKAETEASKAIEK----DGGDVKALYRRSQALEKLGRLDQAV  119 (148)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhh----CccCHHHHHHHHHHHHHcCCHHHHH
Confidence            4445566666666665   777778888888877  888888888888887    7777788888888888888888888


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ..++++++++|++..++..++.+.
T Consensus       120 ~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          120 LDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHH
Confidence            888888888888877777666543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.53  E-value=8.5e-14  Score=86.03  Aligned_cols=90  Identities=12%  Similarity=0.128  Sum_probs=79.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-------HHHHHHHHHHHHHhc
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-------SVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~a~~~~~l~   85 (119)
                      .++++..+++++.++|+++..+..+|.+++..|  +|++|+..++++|++    +|++       +.++.++|.++..+|
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~lg~~~~~~~   97 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK--KFAECVQFCEKAVEV----GRETRADYKLIAKAMSRAGNAFQKQN   97 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh--hHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHHHHHHHHcC
Confidence            357888999999999999999999999999999  999999999999999    5543       468999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ++++|+..+++++..+|+ +...-
T Consensus        98 ~~~~A~~~~~kal~~~~~-~~~~~  120 (127)
T 4gcn_A           98 DLSLAVQWFHRSLSEFRD-PELVK  120 (127)
T ss_dssp             CHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             CHHHHHHHHHHHHhhCcC-HHHHH
Confidence            999999999999999885 44433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.53  E-value=3.6e-14  Score=93.04  Aligned_cols=86  Identities=27%  Similarity=0.288  Sum_probs=64.6

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH----------------HHHHHHHHHHHHhcCHH
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS----------------VLYANRAHVNLLLGNYR   88 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----------------~~~~~~a~~~~~l~~~~   88 (119)
                      ...+..+..+..+|..++..|  +|++|+..|.+++.+    .|.++                .++.++|.|+..+|+|+
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  105 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKN--EINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP  105 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            345556777777888888777  788888888888877    55554                67777888888888888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           89 RAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +|+..++++++++|++..+++.+|.++.
T Consensus       106 ~A~~~~~~al~~~p~~~~~~~~lg~~~~  133 (198)
T 2fbn_A          106 KAIDHASKVLKIDKNNVKALYKLGVANM  133 (198)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            8888888888888877777777777653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.52  E-value=1.2e-13  Score=90.46  Aligned_cols=96  Identities=16%  Similarity=0.112  Sum_probs=86.3

Q ss_pred             hhhHHhHHHHHHhcHHHH----------------HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAA----------------IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR   77 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   77 (119)
                      ++++..+.++..+.|.++                ..+..+|.+++..|  +|++|+..+++++.+    +|.++.+++++
T Consensus        55 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l  128 (198)
T 2fbn_A           55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--DYPKAIDHASKVLKI----DKNNVKALYKL  128 (198)
T ss_dssp             HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CcccHHHHHHH
Confidence            355666777777666554                88999999999999  999999999999999    99999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |.++..+|++++|+..++++++++|++..++..++.++
T Consensus       129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A          129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999888765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=2.6e-13  Score=85.41  Aligned_cols=94  Identities=27%  Similarity=0.316  Sum_probs=79.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|..+..+..+|.++...|  +|++|+..+.+++..    +|.++.+++++|.++..+|++++|+..
T Consensus        30 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~  103 (166)
T 1a17_A           30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALRD  103 (166)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhccHHHHHHH
Confidence            45667778888888888888899999998888  899999999999998    888888899999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhc
Q 033440           94 AEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~  113 (119)
                      +++++.++|.+..++..++.
T Consensus       104 ~~~a~~~~p~~~~~~~~~~~  123 (166)
T 1a17_A          104 YETVVKVKPHDKDAKMKYQE  123 (166)
T ss_dssp             HHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHH
Confidence            99999999988887754443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.52  E-value=5.9e-14  Score=103.41  Aligned_cols=97  Identities=22%  Similarity=0.286  Sum_probs=84.6

Q ss_pred             hhhHHhHHHHHHhcHHH---------------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440           14 ESEKADLDAIAALKESA---------------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA   78 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a   78 (119)
                      +.++..+.+++.++|..               ...+.++|.++++.|  +|++|+..|+++|.+    +|+++.+++++|
T Consensus       285 ~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~~g  358 (457)
T 1kt0_A          285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--EYTKAVECCDKALGL----DSANEKGLYRRG  358 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHH
Confidence            35666777777777766               799999999999999  999999999999999    999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+|..+|+|++|+.+++++++++|++..++..++.++.
T Consensus       359 ~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.52  E-value=2.3e-13  Score=82.74  Aligned_cols=94  Identities=9%  Similarity=0.005  Sum_probs=84.1

Q ss_pred             ChhhHHhHHHHHHhcHHHH---HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcC
Q 033440           13 TESEKADLDAIAALKESAA---IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~   86 (119)
                      .++++..++.+...+|++.   ..+..+|.+++..|  +|++|+..|.+++..    .|++   +.+++++|.++..+|+
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~la~~~~~~g~   91 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR--NFQLAEAQFRDLVSR----YPTHDKAAGGLLKLGLSQYGEGK   91 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHcCC
Confidence            3467788888888888777   79999999999999  999999999999999    8888   8889999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440           87 YRRAFTDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      +++|+..++++++..|++..+...+.
T Consensus        92 ~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           92 NTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            99999999999999999987766544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.51  E-value=3.7e-14  Score=98.32  Aligned_cols=81  Identities=33%  Similarity=0.467  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+..+|+.++..|  +|++|+..|++++..    +|+++.+++++|.++..+|++++|+.+++++++++|++..+++
T Consensus         3 ~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3556677777777766  777777777777777    7777777777777777777777777777777777777777777


Q ss_pred             HhhccCc
Q 033440          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      .+|.++.
T Consensus        77 ~lg~~~~   83 (281)
T 2c2l_A           77 FLGQCQL   83 (281)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.51  E-value=2.5e-13  Score=81.81  Aligned_cols=86  Identities=30%  Similarity=0.388  Sum_probs=80.9

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+|..+..+..+|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+..+.++++++|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVE--NFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcchhhhHHHHHHHHHHHHcc--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            346788999999999999999  999999999999999    99999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCc
Q 033440          105 VKVVILCSGSHP  116 (119)
Q Consensus       105 ~~a~~~~a~~~~  116 (119)
                      +.+++.+|.++.
T Consensus        80 ~~~~~~~~~~~~   91 (131)
T 2vyi_A           80 SKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.50  E-value=1.2e-13  Score=89.16  Aligned_cols=90  Identities=11%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             hhhHHhHHHHHHhcHH------------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh---ccCCCcchHHHH----
Q 033440           14 ESEKADLDAIAALKES------------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ---NVLSDSENSVLY----   74 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~---~~~~~~~~~~~~----   74 (119)
                      +.++..+++++.++|+            ++..|.++|.++...|  +|++|+..|+++|++   .-.-+|+++.+|    
T Consensus        28 eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~  105 (159)
T 2hr2_A           28 DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKALHYFNRRGELNQDEGKLWISAV  105 (159)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHH
Confidence            4677888888888887            3459999999999999  999999999999986   011157888899    


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH
Q 033440           75 ANRAHVNLLLGNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      +++|.++..+|++++|+.+|+++++++|++.
T Consensus       106 ~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A          106 YSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            9999999999999999999999999998653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.50  E-value=1.3e-13  Score=84.77  Aligned_cols=93  Identities=14%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..+..+...+|+++..+..+|.+++..|  ++++|+..+.+++.+    +|.++.+++++|.++..+|++++|+..
T Consensus        26 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~   99 (137)
T 3q49_B           26 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIAN   99 (137)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHHhhHHHHHHH
Confidence            46778889999999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCC-----CHHHHHHhh
Q 033440           94 AEEALKLCPT-----NVKVVILCS  112 (119)
Q Consensus        94 ~~~al~l~p~-----~~~a~~~~a  112 (119)
                      ++++++++|+     +......+.
T Consensus       100 ~~~a~~~~p~~~~~~~~~~~~~l~  123 (137)
T 3q49_B          100 LQRAYSLAKEQRLNFGDDIPSALR  123 (137)
T ss_dssp             HHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred             HHHHHHHChhHHHHHHHHHHHHHH
Confidence            9999999987     555544443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.50  E-value=2.4e-13  Score=91.75  Aligned_cols=99  Identities=19%  Similarity=0.146  Sum_probs=87.8

Q ss_pred             ChhhHHhHHHHHHh----cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH
Q 033440           13 TESEKADLDAIAAL----KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        13 ~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      .++++..++++...    +|..+..+..+|..++..|  ++++|+..|.+++..    +|.++.++.++|.++..+|+++
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHH
Confidence            34566677777765    5788999999999999998  999999999999999    9999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           89 RAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+..++++++++|++..+++.+|.++..
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            99999999999999999999999987743

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.50  E-value=4.4e-13  Score=96.60  Aligned_cols=96  Identities=19%  Similarity=0.189  Sum_probs=87.5

Q ss_pred             hhhHHhHHHHHH----------------hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHH
Q 033440           14 ESEKADLDAIAA----------------LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANR   77 (119)
Q Consensus        14 ~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   77 (119)
                      ++++..+.+++.                .+|..+..+.++|.++++.|  +|++|+..+++++++    +|+++.+++++
T Consensus       240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~l  313 (370)
T 1ihg_A          240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--DWQGAVDSCLEALEI----DPSNTKALYRR  313 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHh----CchhHHHHHHH
Confidence            345566666666                78889999999999999999  999999999999999    99999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           78 AHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        78 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |.++..+|++++|+.+++++++++|++..++..++.++
T Consensus       314 g~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          314 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999998887664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=3.5e-13  Score=79.90  Aligned_cols=81  Identities=35%  Similarity=0.518  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+..+|..++..|  ++++|+..|++++..    .|.++.++.++|.++..+|++++|+..++++++++|+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (118)
T 1elw_A            3 QVNELKEKGNKALSVG--NIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   76 (118)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence            4678899999999999  999999999999999    9999999999999999999999999999999999999999999


Q ss_pred             HhhccCc
Q 033440          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      .+|.++.
T Consensus        77 ~~a~~~~   83 (118)
T 1elw_A           77 RKAAALE   83 (118)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998774

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.49  E-value=3.9e-14  Score=84.10  Aligned_cols=72  Identities=11%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      .+|+++..+..+|..++..|  +|++|+..|++++++    +|+++.+++++|.++..+|++++|+..+++++++.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHD--NASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            36788999999999999999  999999999999999    9999999999999999999999999999999999774

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.49  E-value=9.5e-14  Score=84.30  Aligned_cols=85  Identities=33%  Similarity=0.488  Sum_probs=79.7

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .|....++..+|..++..|  ++++|+..|++++..    .|.++.+++++|.++..+|++++|+..++++++++|++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKG--DYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTT--CSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            3557889999999999999  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCcC
Q 033440          107 VVILCSGSHPN  117 (119)
Q Consensus       107 a~~~~a~~~~~  117 (119)
                      +++.+|.++..
T Consensus        86 ~~~~la~~~~~   96 (133)
T 2lni_A           86 GYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988743

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=2.6e-13  Score=89.98  Aligned_cols=81  Identities=20%  Similarity=0.287  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHH----------------HHHHHHHhcCHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYAN----------------RAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------~a~~~~~l~~~~~A~~~   93 (119)
                      .+..+..+|..++..|  +|++|+..|++++.+    +|+++.+++.                +|.++..+|++++|+..
T Consensus         3 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAG--QNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3567889999999999  999999999999999    9999999999                99999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|+++.+++.+|.++.
T Consensus        77 ~~~al~~~p~~~~~~~~lg~~~~   99 (208)
T 3urz_A           77 YKELLQKAPNNVDCLEACAEMQV   99 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999999999999998874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.48  E-value=3.6e-14  Score=109.02  Aligned_cols=96  Identities=11%  Similarity=0.015  Sum_probs=74.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++..++|+++.+++.+|..++..|  ++++|+..|++++++    +|+++.+++++|.++..+|++++ +..
T Consensus       450 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~~lg~~~~~~g~~~~-~~~  522 (681)
T 2pzi_A          450 AKATRKLDDLAERVGWRWRLVWYRAVAELLTG--DYDSATKHFTEVLDT----FPGELAPKLALAATAELAGNTDE-HKF  522 (681)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCChHH-HHH
Confidence            35666777777788888888888888888877  888888888888888    77777777777777777777777 777


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+++++++|++..+|+++|.++.
T Consensus       523 ~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          523 YQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCchHHHHHHHHHHHH
Confidence            77777777777777777777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=3.4e-13  Score=99.65  Aligned_cols=97  Identities=18%  Similarity=0.104  Sum_probs=91.5

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHh--------ChhcHHHHHHHHHHHHhhccCCCc---chHHHHHHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKK--------GKKHYSDAIDCYTRAINQNVLSDS---ENSVLYANRAHVNL   82 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~a~~~~   82 (119)
                      ++++..++++..++|+++..+..+|..+...        |  ++++|+..|++++.+    +|   .++.+++++|.++.
T Consensus       196 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~~  269 (474)
T 4abn_A          196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK--ISQQALSAYAQAEKV----DRKASSNPDLHLNRATLHK  269 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHHHHH----CGGGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHH
Confidence            4677889999999999999999999999998        8  999999999999999    89   99999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           83 LLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        83 ~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+|++++|+..++++++++|++..++..++.++.
T Consensus       270 ~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  303 (474)
T 4abn_A          270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLE  303 (474)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999987653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.47  E-value=2.2e-13  Score=82.02  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      ..+..++++...+|+++..+..+|..++..|  ++++|+..|.+++.+    +|.++.+++++|.++..+|++++|+..+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHE--QFDAALPHLRAALDF----DPTYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3567888888999999999999999999999  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhhCCC
Q 033440           95 EEALKLCPT  103 (119)
Q Consensus        95 ~~al~l~p~  103 (119)
                      +++++++|.
T Consensus        77 ~~al~~~~~   85 (115)
T 2kat_A           77 ESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhccc
Confidence            999999884

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.47  E-value=6.9e-13  Score=83.39  Aligned_cols=83  Identities=31%  Similarity=0.422  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +.+..+..+|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+..++++++++|+++.++
T Consensus        11 ~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   84 (166)
T 1a17_A           11 KRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   84 (166)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            46788999999999999  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHhhccCcC
Q 033440          109 ILCSGSHPN  117 (119)
Q Consensus       109 ~~~a~~~~~  117 (119)
                      +.+|.++..
T Consensus        85 ~~~a~~~~~   93 (166)
T 1a17_A           85 YRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988743

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=1e-13  Score=98.57  Aligned_cols=85  Identities=21%  Similarity=0.155  Sum_probs=56.9

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-----------------HHHHHHHHHHHHhcCHH
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-----------------VLYANRAHVNLLLGNYR   88 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~~~~a~~~~~l~~~~   88 (119)
                      ..+..+..+..+|+.+++.|  +|++|+..|.+++.+    .|.+.                 .+++++|.|+.++|+|+
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g--~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~  247 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEE--KLEEAMQQYEMAIAY----MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD  247 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSS--CCHHHHHHHHHHHHH----SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH----hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            34555666667777777666  677777777777766    66555                 26666777777777777


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           89 RAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +|+.+|+++++++|++..+|+++|.+|.
T Consensus       248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~  275 (338)
T 2if4_A          248 EAIGHCNIVLTEEEKNPKALFRRGKAKA  275 (338)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            7777777777777777777777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.47  E-value=9.3e-14  Score=106.76  Aligned_cols=97  Identities=15%  Similarity=0.053  Sum_probs=90.7

Q ss_pred             hhhHHhHHHHH--------HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           14 ESEKADLDAIA--------ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      +++++.++++.        ..+|+++..+..+|..++..|  ++++|+..|+++++.    +|+++.+++++|.++..+|
T Consensus       408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG--DVAKATRKLDDLAER----VGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC--CHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHcC
Confidence            46677788888        888999999999999999999  999999999999999    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++|+.+|+++++++|++..+++.+|.++.
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            9999999999999999999999999998874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.47  E-value=4.9e-13  Score=94.19  Aligned_cols=98  Identities=16%  Similarity=0.072  Sum_probs=92.0

Q ss_pred             ChhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440           13 TESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      .++++..++++..++|+  ++..+..+|..+...|  ++++|+..|++++..    .|.++.++.++|.++..+|++++|
T Consensus       193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A  266 (365)
T 4eqf_A          193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG--EFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEA  266 (365)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            34677888888899998  8999999999999999  999999999999999    999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           91 FTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +..++++++++|+++.+++.+|.++.
T Consensus       267 ~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          267 VEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            99999999999999999999998874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.6e-13  Score=83.90  Aligned_cols=85  Identities=33%  Similarity=0.432  Sum_probs=79.2

Q ss_pred             hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           26 LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        26 ~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      .++..+..+..+|..++..|  +|++|+..|++++..    .|++   ..++.++|.++..+|++++|+..++++++++|
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   96 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCG--DYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG   96 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence            34567888999999999999  999999999999999    8887   89999999999999999999999999999999


Q ss_pred             CCHHHHHHhhccCc
Q 033440          103 TNVKVVILCSGSHP  116 (119)
Q Consensus       103 ~~~~a~~~~a~~~~  116 (119)
                      +++.+++.+|.++.
T Consensus        97 ~~~~~~~~~a~~~~  110 (148)
T 2dba_A           97 GDVKALYRRSQALE  110 (148)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998774

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.46  E-value=3.6e-13  Score=97.08  Aligned_cols=88  Identities=20%  Similarity=0.229  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------CCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------SDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      ...+..+..+|+.+++.|  +|++|+..|++++++.+.            ..|.++.++.++|.|+.++|+|++|+.+|+
T Consensus       220 ~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  297 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL  297 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            446788999999999999  999999999999982111            178889999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHhhccCcC
Q 033440           96 EALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++|+++.+++++|.+|..
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~  319 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQG  319 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHH
Confidence            9999999999999999998753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.46  E-value=1.2e-12  Score=78.79  Aligned_cols=98  Identities=21%  Similarity=0.310  Sum_probs=90.1

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...+..+...+|.....+..+|..+...|  ++++|+..+.+++..    .|.++.++.++|.++...|++++|+..
T Consensus        18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~   91 (136)
T 2fo7_A           18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEY   91 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc--CHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHhcCHHHHHHH
Confidence            46677788888888888999999999999998  999999999999999    899999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCcC
Q 033440           94 AEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++++...|.+..+++.+|.++..
T Consensus        92 ~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           92 YQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHH
Confidence            999999999999999999887643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.45  E-value=5.4e-13  Score=98.89  Aligned_cols=96  Identities=26%  Similarity=0.303  Sum_probs=91.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++++.++++..++|+.+..+..+|.++.+.|  +|++|+..|++++++    +|.++.+++++|.++..+|++++|+.
T Consensus        22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            457888999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhcc
Q 033440           93 DAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      .++++++++|++..++..++.+
T Consensus        96 ~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           96 DYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999888888766

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.45  E-value=1.1e-12  Score=83.14  Aligned_cols=97  Identities=19%  Similarity=0.074  Sum_probs=84.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++.+...+|.....+..+|..++..|  ++++|+..+.+++..    .|.++.++..+|.++..+|++++|+..
T Consensus        59 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~  132 (186)
T 3as5_A           59 DRGTELLERSLADAPDNVKVATVLGLTYVQVQ--KYDLAVPLLIKVAEA----NPINFNVRFRLGVALDNLGRFDEAIDS  132 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence            45667777888888888888999999999988  899999999999998    888888999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++.+|+++.+++.+|.++.
T Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~  155 (186)
T 3as5_A          133 FKIALGLRPNEGKVHRAIAFSYE  155 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCccchHHHHHHHHHHH
Confidence            99999999999988888887764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.45  E-value=3.1e-13  Score=81.56  Aligned_cols=82  Identities=27%  Similarity=0.324  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC----
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN----  104 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----  104 (119)
                      +.+..+..+|..++..|  ++++|+..|.+++..    .|.++.++.++|.++..+|++++|+..+++++.+.|++    
T Consensus         2 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            2 KQALKEKELGNDAYKKK--DFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence            46788999999999998  999999999999999    99999999999999999999999999999999999877    


Q ss_pred             ---HHHHHHhhccCc
Q 033440          105 ---VKVVILCSGSHP  116 (119)
Q Consensus       105 ---~~a~~~~a~~~~  116 (119)
                         ..+++.+|.++.
T Consensus        76 ~~~~~~~~~la~~~~   90 (131)
T 1elr_A           76 RQIAKAYARIGNSYF   90 (131)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence               889999998764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.45  E-value=3e-13  Score=101.30  Aligned_cols=94  Identities=11%  Similarity=0.032  Sum_probs=43.2

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...++++...+|+++..+..+|..++..|  ++++|+..|++++++    +|+++.++.++|.++..+|++++|+..++
T Consensus         8 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            8 ELLQLRAAVRHRPQDFVAWLMLADAELGMG--DTTAGEMAVQRGLAL----HPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------CCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344444444555555555555555555554  555555555555555    55555555555555555555555555555


Q ss_pred             HHHhhCCCCHHHHHHhhccC
Q 033440           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++|++..+++.+|.++
T Consensus        82 ~al~~~p~~~~~~~~la~~~  101 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHAL  101 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHH
Confidence            55555555555555555444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.44  E-value=4.4e-13  Score=81.52  Aligned_cols=80  Identities=13%  Similarity=0.060  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC---H
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---VLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN---V  105 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~  105 (119)
                      ..+..+|..++..|  +|++|+..|.+++..    .|+++   .+++.+|.++..+|++++|+..++++++.+|++   +
T Consensus         3 ~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   76 (129)
T 2xev_A            3 RTAYNVAFDALKNG--KYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA   76 (129)
T ss_dssp             CCHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred             HHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence            45678999999999  999999999999999    77777   799999999999999999999999999999999   8


Q ss_pred             HHHHHhhccCcC
Q 033440          106 KVVILCSGSHPN  117 (119)
Q Consensus       106 ~a~~~~a~~~~~  117 (119)
                      .+++.+|.++..
T Consensus        77 ~~~~~la~~~~~   88 (129)
T 2xev_A           77 GGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=3.7e-13  Score=99.41  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh---------
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---------   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---------   84 (119)
                      ++++..++++.+++|+++.++..+|.+++..|  ++++|+..|++++++    +|+ +.++.++|.++..+         
T Consensus       120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~-~~~~~~lg~~~~~~~~~~~~~~~  192 (474)
T 4abn_A          120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--DVTSAHTCFSGALTH----CKN-KVSLQNLSMVLRQLQTDSGDEHS  192 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCC-HHHHHHHHHHHHHhccCChhhhh
Confidence            67888999999999999999999999999998  999999999999999    888 69999999999999         


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |++++|+..++++++++|+++.+|+.+|.++..
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  225 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS  225 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999988753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.44  E-value=1.7e-12  Score=78.19  Aligned_cols=96  Identities=18%  Similarity=0.260  Sum_probs=86.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch-------HHHHHHHHHHHHHhc
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN-------SVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~a~~~~~l~   85 (119)
                      .++++..+.++...+|..+..+..+|..++..|  ++++|+..+.+++..    .|.+       +.+++++|.++..+|
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~~   93 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--DYNKCRELCEKAIEV----GRENREDYRQIAKAYARIGNSYFKEE   93 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----ccccchhHHHHHHHHHHHHHHHHHhc
Confidence            356778888999999999999999999999999  999999999999999    6666       889999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++|+..++++++++| +...+..++.+.
T Consensus        94 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           94 KYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            99999999999999999 677777776543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.44  E-value=1.1e-12  Score=76.70  Aligned_cols=68  Identities=15%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      ..+|..++..|  ++++|+..|+++++.    +|+++. +++++|.++..+|++++|+..++++++++|++..++
T Consensus         4 ~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQG--DIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHT--CHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            56899999998  999999999999999    999999 999999999999999999999999999999999887

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.43  E-value=1.5e-12  Score=91.31  Aligned_cols=97  Identities=19%  Similarity=0.150  Sum_probs=90.6

Q ss_pred             hhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           14 ESEKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ++++..++++...+|+  .+..+..+|..+...|  ++++|+..|++++.+    .|.++.++.++|.++..+|++++|+
T Consensus       198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--EYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3566778888888998  8999999999999999  999999999999999    9999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ..++++++++|+++.+++.+|.++.
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999999999998874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=4.6e-13  Score=95.15  Aligned_cols=95  Identities=19%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++..++|+++..+..+|..+...|  ++++|+..|+++++.    .|+++.++.++|.++...|++++|+..+
T Consensus       289 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          289 EAEDCYNTALRLCPTHADSLNNLANIKREQG--NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4445555555556666666666666666655  666666666666666    6666666666666666666666666666


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++|+++.+++.+|.++
T Consensus       363 ~~a~~~~p~~~~a~~~lg~~~  383 (388)
T 1w3b_A          363 KEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHhhCCCCHHHHHhHHHHH
Confidence            666666666666666666554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.43  E-value=4e-13  Score=95.49  Aligned_cols=97  Identities=15%  Similarity=0.116  Sum_probs=75.1

Q ss_pred             ChhhHHhHHHHHHhcHHHH-----------------HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHH
Q 033440           13 TESEKADLDAIAALKESAA-----------------IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYA   75 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~   75 (119)
                      .++++..+.++..+.|.+.                 ..+.++|.++++.|  +|++|+..|+++|.+    +|+++.+++
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~  268 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK--RYDEAIGHCNIVLTE----EEKNPKALF  268 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT--CCHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHH
Confidence            4567778888888888876                 48999999999999  999999999999999    999999999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           76 NRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        76 ~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++|.++..+|+|++|+.+++++++++|++..++..++.+.
T Consensus       269 ~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          269 RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.43  E-value=7.9e-13  Score=98.98  Aligned_cols=99  Identities=13%  Similarity=0.020  Sum_probs=92.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++++..++|+++..+..+|..+...|  ++++|+..|++++++    +|+++.+++++|.++..+|++++|+.
T Consensus        39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~  112 (568)
T 2vsy_A           39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ--RHAEAAVLLQQASDA----APEHPGIALWLGHALEDAGQAEAAAA  112 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            346778888899999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .++++++++|++..+++.+|.++..
T Consensus       113 ~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A          113 AYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999987643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=1.5e-12  Score=92.42  Aligned_cols=96  Identities=24%  Similarity=0.226  Sum_probs=63.6

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..+.++..++|+++..+..+|..+...|  ++++|+..|++++++    .|+++.++.++|.++...|++++|+..
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~  293 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQG--LIDLAIDTYRRAIEL----QPHFPDAYCNLANALKEKGSVAEAEDC  293 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----CSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34555556666666666666666666666666  666666666666666    666666666666666666666666666


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|+++.++..+|.++
T Consensus       294 ~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          294 YNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhCcccHHHHHHHHHHH
Confidence            6666666666666666666554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.42  E-value=1.8e-12  Score=90.32  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHH--HHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKG--NEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A   90 (119)
                      .+++.+.++++...+|+........+  +.+...|  ++++|+..|+++++.    .|+++.+++++|.++..+|++++|
T Consensus       146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~--~~~eA~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~eA  219 (291)
T 3mkr_A          146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE--KLQDAYYIFQEMADK----CSPTLLLLNGQAACHMAQGRWEAA  219 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHH
Confidence            35666777888777877554333333  2233335  899999999999998    888999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           91 FTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +..++++++++|+++.+++++|.++
T Consensus       220 ~~~l~~al~~~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          220 EGVLQEALDKDSGHPETLINLVVLS  244 (291)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999998888765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.41  E-value=5.7e-13  Score=90.45  Aligned_cols=91  Identities=16%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             hhHHhHHHHHHhcHHH---HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH--------
Q 033440           15 SEKADLDAIAALKESA---AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL--------   83 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~--------   83 (119)
                      +++..++.+...+|++   +.++..+|.+++..|  +|++|+..|++++...|. +|..+.+++.+|.|+..        
T Consensus        33 ~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~~~  109 (261)
T 3qky_A           33 RAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--EYLLAASEYERFIQIYQI-DPRVPQAEYERAMCYYKLSPPYELD  109 (261)
T ss_dssp             HHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred             HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHHhccccccc
Confidence            4445555555555555   566666666666666  666666666666666222 22344556666666666        


Q ss_pred             hcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           84 LGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +|++++|+..++++++..|++..+.
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHH
Confidence            6666666666666666666554433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.41  E-value=1.3e-12  Score=93.99  Aligned_cols=98  Identities=17%  Similarity=0.227  Sum_probs=78.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      +......+..+...+|.++..+..+|..+++.|  ++++|+..|++++..    +|.++.+++.+|.++..+|++++|+.
T Consensus         8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~   81 (450)
T 2y4t_A            8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAG--QLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP   81 (450)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHH
Confidence            334556677777889999999999999999988  999999999999999    89999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++++|++..+++.+|.++.
T Consensus        82 ~~~~al~~~p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           82 DLTKVIQLKMDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHH
Confidence            999999999999999999988764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.8e-12  Score=85.43  Aligned_cols=97  Identities=13%  Similarity=0.136  Sum_probs=91.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++...+|+++..+..+|..+...|  ++++|+..+++++..    .|+++.++..+|.++..+|++++|+.
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--SFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            356778899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhC------CCCHHHHHHhhccC
Q 033440           93 DAEEALKLC------PTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~------p~~~~a~~~~a~~~  115 (119)
                      .++++++++      |++..++..++.++
T Consensus       229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          229 TLDAARTKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence            999999999      99999998888765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=1e-12  Score=86.21  Aligned_cols=94  Identities=21%  Similarity=0.198  Sum_probs=81.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++.  ++ .+..+..+|.+++..|  ++++|+..|.+++.+    +|.++.+++++|.++..+|++++|+..+
T Consensus        24 ~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~   94 (213)
T 1hh8_A           24 GALDAFSAVQ--DP-HSRICFNIGCMYTILK--NMTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKDL   94 (213)
T ss_dssp             HHHHHHHTSS--SC-CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHc--CC-ChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcccHHHHHHHH
Confidence            3444444442  33 5779999999999999  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhhCCCCH----------------HHHHHhhccCcC
Q 033440           95 EEALKLCPTNV----------------KVVILCSGSHPN  117 (119)
Q Consensus        95 ~~al~l~p~~~----------------~a~~~~a~~~~~  117 (119)
                      ++++++.|.+.                .+++.+|.++..
T Consensus        95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence            99999888776                999999987743

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.40  E-value=2.6e-12  Score=76.67  Aligned_cols=80  Identities=28%  Similarity=0.399  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+..+|..++..|  ++++|+..|.+++..    .|.++.++..+|.++...|++++|+..++++++.+|++..+++.
T Consensus         9 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            9 AEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            788999999999998  999999999999999    99999999999999999999999999999999999999999999


Q ss_pred             hhccCc
Q 033440          111 CSGSHP  116 (119)
Q Consensus       111 ~a~~~~  116 (119)
                      +|.++.
T Consensus        83 la~~~~   88 (125)
T 1na0_A           83 LGNAYY   88 (125)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.40  E-value=3.8e-12  Score=84.36  Aligned_cols=92  Identities=25%  Similarity=0.247  Sum_probs=43.2

Q ss_pred             HHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           17 KADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      +..++++...+|.....+..+|..+...|  ++++|+..+.+++..    .|.++.++..+|.++..+|++++|+..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A           77 LAFYDKALELDSSAATAYYGAGNVYVVKE--MYKEAKDMFEKALRA----GMENGDLFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            33344444444444444444444444444  444444444444444    444444444444444444444444444444


Q ss_pred             HHhhCCCCHHHHHHhhcc
Q 033440           97 ALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        97 al~l~p~~~~a~~~~a~~  114 (119)
                      +++++|++..+++.+|.+
T Consensus       151 ~~~~~~~~~~~~~~l~~~  168 (243)
T 2q7f_A          151 AVELNENDTEARFQFGMC  168 (243)
T ss_dssp             HHHHCTTCHHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHH
Confidence            444444444444444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=1.8e-12  Score=90.88  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=91.4

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+.++..++|+++..+..+|..+...|  ++++|+..|++++.+    .|.++.++.++|.++..+|++++|+.
T Consensus       233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGN--QSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            356778888889999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCC-----------HHHHHHhhccCc
Q 033440           93 DAEEALKLCPTN-----------VKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~-----------~~a~~~~a~~~~  116 (119)
                      .+++++.++|++           ..+|..+|.++.
T Consensus       307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  341 (368)
T 1fch_A          307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS  341 (368)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence            999999999988           889999988763

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.40  E-value=1.7e-12  Score=76.38  Aligned_cols=86  Identities=19%  Similarity=0.195  Sum_probs=81.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHh-cCHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-GNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-~~~~~   89 (119)
                      .++++..++++...+|.....+..+|..++..|  ++++|+..+++++..    .|.  ++.++.++|.++..+ |++++
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~   95 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLE--RYEEAVDCYNYVINV----IEDEYNKDVWAAKADALRYIEGKEVE   95 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----SCCTTCHHHHHHHHHHHTTCSSCSHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CcccchHHHHHHHHHHHHHHhCCHHH
Confidence            356778899999999999999999999999999  999999999999999    999  999999999999999 99999


Q ss_pred             HHHHHHHHHhhCCCC
Q 033440           90 AFTDAEEALKLCPTN  104 (119)
Q Consensus        90 A~~~~~~al~l~p~~  104 (119)
                      |+..+++++..+|.+
T Consensus        96 A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           96 AEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhhcccCC
Confidence            999999999999975

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.39  E-value=3.6e-12  Score=87.61  Aligned_cols=98  Identities=18%  Similarity=0.161  Sum_probs=91.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++.+...+|..+..+..+|..+...|  ++++|+..+.+++..    .|.++.++.++|.++...|++++|+..
T Consensus       155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  228 (327)
T 3cv0_A          155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSN--NYDSAAANLRRAVEL----RPDDAQLWNKLGATLANGNRPQEALDA  228 (327)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            45667788888889999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCcC
Q 033440           94 AEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++++|++..+++.+|.++..
T Consensus       229 ~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          229 YNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987743

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=2.4e-12  Score=85.37  Aligned_cols=94  Identities=11%  Similarity=-0.012  Sum_probs=46.4

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...++++...+|.....+..+|..++..|  ++++|+..+.+++..    .|.++.++..+|.++...|++++|+..++
T Consensus       110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (243)
T 2q7f_A          110 AKDMFEKALRAGMENGDLFYMLGTVLVKLE--QPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQFA  183 (243)
T ss_dssp             HHHHHHHHHHHTCCSHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            334444444444444445555555555544  555555555555555    44444445555555555555555555555


Q ss_pred             HHHhhCCCCHHHHHHhhccC
Q 033440           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++.+|++..+++.+|.++
T Consensus       184 ~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          184 AVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             HHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHH
Confidence            55555554444444444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.38  E-value=5e-12  Score=85.22  Aligned_cols=94  Identities=13%  Similarity=0.107  Sum_probs=85.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++...+|.++..+..+|..+...|  ++++|+..|.+++.+    .|.++.++.++|.++..+|++++|+.
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A           59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CccccHHHHHHHHHHHHhccHHHHHH
Confidence            346778888999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhh
Q 033440           93 DAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a  112 (119)
                      .++++++++|++...+...+
T Consensus       133 ~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A          133 DLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHH
Confidence            99999999999986554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=4.5e-12  Score=84.82  Aligned_cols=94  Identities=18%  Similarity=0.143  Sum_probs=44.7

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHh--hccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAIN--QNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +...++++...+|.....+..+|..++..|  ++++|+..+.+++.  .    .|.++.++.++|.++..+|++++|+..
T Consensus        90 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~  163 (252)
T 2ho1_A           90 ADEEYRKALASDSRNARVLNNYGGFLYEQK--RYEEAYQRLLEASQDTL----YPERSRVFENLGLVSLQMKKPAQAKEY  163 (252)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTCTT----CTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCcCcHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhCcc----CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            333344444444444444444444444444  44444444444444  3    444444455555555555555555555


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++.+|.+..+++.+|.++
T Consensus       164 ~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          164 FEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHH
Confidence            5555555555444444444433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.38  E-value=6.9e-12  Score=81.97  Aligned_cols=95  Identities=9%  Similarity=0.077  Sum_probs=59.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHh--hccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYSDAIDCYTRAIN--QNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ++...++++...+|.....+..+|..++.. |  ++++|+..+++++.  .    .|.++.++.++|.++...|++++|+
T Consensus        60 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~  133 (225)
T 2vq2_A           60 KAQESFRQALSIKPDSAEINNNYGWFLCGRLN--RPAESMAYFDKALADPT----YPTPYIANLNKGICSAKQGQFGLAE  133 (225)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHHTSTT----CSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCcC----CcchHHHHHHHHHHHHHcCCHHHHH
Confidence            445555555556666666666666666666 6  66666666666666  3    5555666666666666666666666


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ..++++++.+|+++.+++.+|.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~la~~~  157 (225)
T 2vq2_A          134 AYLKRSLAAQPQFPPAFKELARTK  157 (225)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHH
Confidence            666666666666666666666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.37  E-value=1.2e-12  Score=82.95  Aligned_cols=96  Identities=14%  Similarity=0.082  Sum_probs=86.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++.+...+|..+..+..+|..++..|  ++++|+..+.+++..    .|.++.++.++|.++...|++++|+..+
T Consensus        26 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~   99 (186)
T 3as5_A           26 QAVMLLEQVYDADAFDVDVALHLGIAYVKTG--AVDRGTELLERSLAD----APDNVKVATVLGLTYVQVQKYDLAVPLL   99 (186)
T ss_dssp             HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4555566666677888899999999999998  999999999999999    9999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHhhccCc
Q 033440           95 EEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++..+|++..+++.+|.++.
T Consensus       100 ~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A          100 IKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCcHhHHHHHHHHHHHH
Confidence            9999999999999999988764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.36  E-value=2.3e-12  Score=86.99  Aligned_cols=99  Identities=11%  Similarity=0.052  Sum_probs=61.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++...+|+++..+..+|.+++..|  ++++|+..+.+++.. +......+.++.++|.++..+|++++|+..
T Consensus        20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~   96 (272)
T 3u4t_A           20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA--KYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQ   96 (272)
T ss_dssp             HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT--CHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            34556666666666666666666677666666  677777777666663 211112244466666666666666666666


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|+++.+++.+|.++
T Consensus        97 ~~~a~~~~~~~~~~~~~l~~~~  118 (272)
T 3u4t_A           97 YQAAVDRDTTRLDMYGQIGSYF  118 (272)
T ss_dssp             HHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHH
Confidence            6666666666666666666655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.36  E-value=3.4e-12  Score=87.87  Aligned_cols=97  Identities=14%  Similarity=0.051  Sum_probs=80.8

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++...+|+.+..+..+|..+...|  ++++|+..|.+++..    .|.+...+..+|.++...|++++|+..
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVES--EHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERF  181 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            45667777887888888888888888888888  888888888888888    888888888888888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|+++.+++.+|.++.
T Consensus       182 ~~~al~~~~~~~~~~~~l~~~~~  204 (330)
T 3hym_B          182 FSQALSIAPEDPFVMHEVGVVAF  204 (330)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHH
Confidence            88888888888888888887664

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.36  E-value=6.4e-12  Score=82.34  Aligned_cols=97  Identities=13%  Similarity=0.014  Sum_probs=83.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------CCcchHHHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------SDSENSVLYANRAHV   80 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~a~~   80 (119)
                      .++++..++++..++|..+..+..+|.+++..|  ++++|+..|++++...|.            ..|..+.+++++|.+
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  130 (213)
T 1hh8_A           53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM  130 (213)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence            356778899999999999999999999999999  999999999999998332            123455999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           81 NLLLGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        81 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +..+|++++|+..++++++++|++.......
T Consensus       131 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  161 (213)
T 1hh8_A          131 YAKKEEWKKAEEQLALATSMKSEPRHSKIDK  161 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence            9999999999999999999999775444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.36  E-value=4.9e-12  Score=84.65  Aligned_cols=95  Identities=19%  Similarity=0.126  Sum_probs=53.8

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++...+|..+..+..+|..+...|  ++++|+..|.+++..    .|.++.++.++|.++...|++++|+..+
T Consensus        55 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~  128 (252)
T 2ho1_A           55 QAKVPLRKALEIDPSSADAHAALAVVFQTEM--EPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRL  128 (252)
T ss_dssp             GGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3444455555555555555555555555555  555555555555555    5555555555555555555555555555


Q ss_pred             HHHHh--hCCCCHHHHHHhhccC
Q 033440           95 EEALK--LCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~--l~p~~~~a~~~~a~~~  115 (119)
                      ++++.  .+|.+..+++.+|.++
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~  151 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVS  151 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHhCccCcccHHHHHHHHHHH
Confidence            55555  5555555555555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.35  E-value=4.1e-12  Score=87.31  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=91.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .+++...++.+...+|+++..+..+|..+...|  ++++|+..+++++..    .|.++.++.++|.++..+|++++|+.
T Consensus       188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGN--RPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            356777888888999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCC------------CHHHHHHhhccCc
Q 033440           93 DAEEALKLCPT------------NVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~------------~~~a~~~~a~~~~  116 (119)
                      .++++++++|+            +..++..+|.++.
T Consensus       262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (327)
T 3cv0_A          262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN  297 (327)
T ss_dssp             HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence            99999999999            7889999888764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.35  E-value=2.1e-12  Score=90.95  Aligned_cols=92  Identities=13%  Similarity=-0.019  Sum_probs=71.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++...+|+++..+..+|..++..|  ++++|+..|++++.+    +|.++.++.++|.++..+|++++|+..
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~  155 (365)
T 4eqf_A           82 PVTILFMEAAILQDPGDAEAWQFLGITQAENE--NEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEA  155 (365)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHccccHHHHHHH
Confidence            35566777777788888888888888888887  888888888888888    888888888888888888888888888


Q ss_pred             HHHHHhhCCCCHHHHHHh
Q 033440           94 AEEALKLCPTNVKVVILC  111 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~  111 (119)
                      ++++++++|++..++..+
T Consensus       156 ~~~al~~~p~~~~~~~~~  173 (365)
T 4eqf_A          156 LKNWIKQNPKYKYLVKNK  173 (365)
T ss_dssp             HHHHHHHCHHHHCC----
T ss_pred             HHHHHHhCccchHHHhhh
Confidence            888888888766655544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.35  E-value=6.4e-12  Score=82.11  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=78.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh-cCHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-GNYRRAFT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~~~~~A~~   92 (119)
                      ++++..++.+...+|+.+..+..+|..+...|  ++++|+..|.+++..    .|.++.++.++|.++... |++++|+.
T Consensus        25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~~A~~   98 (225)
T 2vq2_A           25 RQATASIEDALKSDPKNELAWLVRAEIYQYLK--VNDKAQESFRQALSI----KPDSAEINNNYGWFLCGRLNRPAESMA   98 (225)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhcCcHHHHHH
Confidence            45667777777788888888888888888887  888888888888888    888888888888888888 88888888


Q ss_pred             HHHHHHh--hCCCCHHHHHHhhccCc
Q 033440           93 DAEEALK--LCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~--l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++  .+|.+..+++.+|.++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (225)
T 2vq2_A           99 YFDKALADPTYPTPYIANLNKGICSA  124 (225)
T ss_dssp             HHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcCCcchHHHHHHHHHHHH
Confidence            8888888  56666778888777653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.35  E-value=3.1e-12  Score=88.01  Aligned_cols=96  Identities=18%  Similarity=0.162  Sum_probs=87.6

Q ss_pred             hhhHHhHHHHHHhc---------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 033440           14 ESEKADLDAIAALK---------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l   84 (119)
                      +++...++++....         |..+..+..+|..+...|  ++++|+..|++++..    .|+++.++.++|.++..+
T Consensus       210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~  283 (330)
T 3hym_B          210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK--KYAEALDYHRQALVL----IPQNASTYSAIGYIHSLM  283 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHh
Confidence            45666677776665         666789999999999999  999999999999999    999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |++++|+..++++++++|+++.++..++.++
T Consensus       284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999876

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.34  E-value=7.3e-12  Score=84.95  Aligned_cols=97  Identities=11%  Similarity=0.092  Sum_probs=85.3

Q ss_pred             hhhHHhHHHHHHhcH---HHHHHHHHHHHHHHH--------hChhcHHHHHHHHHHHHhhccCCCcchHHHH--------
Q 033440           14 ESEKADLDAIAALKE---SAAIELKEKGNEYVK--------KGKKHYSDAIDCYTRAINQNVLSDSENSVLY--------   74 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~--------~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~--------   74 (119)
                      ++++..++++...+|   ....+++.+|.+++.        .|  ++++|+..|++++..    .|+++.+.        
T Consensus        69 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~p~~~~~~~a~~~~~~  142 (261)
T 3qky_A           69 LLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT--DTRKAIEAFQLFIDR----YPNHELVDDATQKIRE  142 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH--HHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch--hHHHHHHHHHHHHHH----CcCchhHHHHHHHHHH
Confidence            467778888888866   567899999999999        88  999999999999999    77765555        


Q ss_pred             ---------HHHHHHHHHhcCHHHHHHHHHHHHhhCCC---CHHHHHHhhccCc
Q 033440           75 ---------ANRAHVNLLLGNYRRAFTDAEEALKLCPT---NVKVVILCSGSHP  116 (119)
Q Consensus        75 ---------~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~a~~~~  116 (119)
                               +++|.++..+|+|++|+..++++++..|+   .+.+++.+|.++.
T Consensus       143 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          143 LRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence                     88999999999999999999999999998   5679999998775

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.34  E-value=2.6e-12  Score=88.95  Aligned_cols=86  Identities=15%  Similarity=0.136  Sum_probs=81.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++++...+|+++..+..+|.++...|  ++++|+..|++++.+    +|+++.+++++|.++..+|++++|+.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~   93 (281)
T 2c2l_A           20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA   93 (281)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            356788899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 033440           93 DAEEALKLCPTN  104 (119)
Q Consensus        93 ~~~~al~l~p~~  104 (119)
                      .++++++++|++
T Consensus        94 ~~~~al~l~p~~  105 (281)
T 2c2l_A           94 NLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCccc
Confidence            999999999865

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.34  E-value=5.9e-12  Score=80.73  Aligned_cols=90  Identities=12%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHH-HHHhChhcH--HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNE-YVKKGKKHY--SDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      .++++..++++..++|.++..+..+|.. ++..|  ++  ++|+..+.+++..    +|.++.+++++|.++..+|++++
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~--~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~  133 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYYQAS--QHMTAQTRAMIDKALAL----DSNEITALMLLASDAFMQANYAQ  133 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcccHHH
Confidence            3567788899999999999999999999 78888  98  9999999999999    99999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHH
Q 033440           90 AFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~  108 (119)
                      |+..++++++++|++....
T Consensus       134 A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          134 AIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHhhCCCCccHH
Confidence            9999999999999875443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=4.8e-12  Score=85.41  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++...+|..+..+..+|..++..|  ++++|+..|++++..    .|.++.+++++|.+.+..+++++|+..+
T Consensus        92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~  165 (272)
T 3u4t_A           92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG--NFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSSF  165 (272)
T ss_dssp             HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT--CHHHHHHHHGGGCCS----SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555  555555555555555    5555555555552222333555555555


Q ss_pred             HHHHhhCCCCHHHHHHhhccC
Q 033440           95 EEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++|++..+++.+|.++
T Consensus       166 ~~a~~~~p~~~~~~~~~~~~~  186 (272)
T 3u4t_A          166 VKVLELKPNIYIGYLWRARAN  186 (272)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhCccchHHHHHHHHHH
Confidence            555555555555555555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.34  E-value=3.7e-12  Score=93.25  Aligned_cols=84  Identities=23%  Similarity=0.467  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+..+..+..+|..+++.|  +|++|+..|++++..    +|+++.++.++|.|+..+|++++|+..++++++++|+++.
T Consensus        21 ~~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~   94 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAK--NFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK   94 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH
Confidence            3457899999999999999  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCc
Q 033440          107 VVILCSGSHP  116 (119)
Q Consensus       107 a~~~~a~~~~  116 (119)
                      +++.+|.++.
T Consensus        95 ~~~~la~~~~  104 (537)
T 3fp2_A           95 ALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.33  E-value=9.9e-12  Score=90.31  Aligned_cols=82  Identities=27%  Similarity=0.508  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +.+..+..+|+.+++.|  +|++|+..|++++..    +| ++.++.++|.|+..+|++++|+..++++++++|++..++
T Consensus         4 ~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   76 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNK--KYDDAIKYYNWALEL----KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL   76 (514)
T ss_dssp             HHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             hhHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhc----Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence            46788888999999988  899999999999998    77 588888899999999999999999999999999999998


Q ss_pred             HHhhccCcC
Q 033440          109 ILCSGSHPN  117 (119)
Q Consensus       109 ~~~a~~~~~  117 (119)
                      +.+|.++..
T Consensus        77 ~~l~~~~~~   85 (514)
T 2gw1_A           77 LRRASANEG   85 (514)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.32  E-value=2.7e-11  Score=89.98  Aligned_cols=99  Identities=19%  Similarity=0.198  Sum_probs=89.1

Q ss_pred             ChhhHHhHHHHHHh------cHHH-HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           13 TESEKADLDAIAAL------KESA-AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~------~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      .+++.+.++++...      +|+. +..+..+|..+.+.|  ++++|+..|+++++.    .|+++.++..+|.++...|
T Consensus       491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK--MYDAAIDALNQGLLL----STNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----SSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHhC
Confidence            34566777777776      4443 789999999999999  999999999999999    9999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+..++++++++|+++.++..++.+|..
T Consensus       565 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          565 IPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            99999999999999999999999999998864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.31  E-value=4.2e-11  Score=71.66  Aligned_cols=80  Identities=14%  Similarity=0.052  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      +.....+|..+++.+  +|..|+..|.+|+...+..   .+..+.++.++|.|++++|++++|+..++++++++|++..+
T Consensus         5 a~dc~~lG~~~~~~~--~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAYTEA--DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcc--chHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            456789999999998  9999999999999873221   24678899999999999999999999999999999999999


Q ss_pred             HHHhh
Q 033440          108 VILCS  112 (119)
Q Consensus       108 ~~~~a  112 (119)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            87775

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.30  E-value=1.3e-11  Score=90.32  Aligned_cols=98  Identities=15%  Similarity=0.118  Sum_probs=87.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+..+...+|+++..+..+|..+...|  ++++|+..|++++..    .|.++.++.++|.++..+|++++|+.
T Consensus       292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~  365 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ--DYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTESEA  365 (537)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            456778888888889988999999999999988  999999999999999    88888999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++++|+++.+++.+|.++.
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~  389 (537)
T 3fp2_A          366 FFNETKLKFPTLPEVPTFFAEILT  389 (537)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHH
Confidence            999999999999999988887764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.30  E-value=9.3e-12  Score=86.35  Aligned_cols=100  Identities=12%  Similarity=-0.084  Sum_probs=70.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----------------------------
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----------------------------   65 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----------------------------   65 (119)
                      +++...++++...+|+++.++..+|..+...|  ++++|+..+++++...|.                            
T Consensus       134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~a  211 (287)
T 3qou_A          134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALN--RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQ  211 (287)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC--CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHH
Confidence            45566677777778888888888888888777  777776555444322110                            


Q ss_pred             --CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC--HHHHHHhhccC
Q 033440           66 --SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN--VKVVILCSGSH  115 (119)
Q Consensus        66 --~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~  115 (119)
                        .+|+++.+++++|.++...|++++|+..++++++.+|++  ..++..++.++
T Consensus       212 l~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          212 VAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence              067777777788888888888888888888888888777  66777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.30  E-value=2e-11  Score=85.06  Aligned_cols=90  Identities=11%  Similarity=0.066  Sum_probs=82.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH-HH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR-AF   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~-A~   91 (119)
                      .+++...++++...+|+++..+..+|.++.+.|  ++++|+..|++++.+    +|+++.++.++|.++..+|++.+ +.
T Consensus       182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~~al~~----~p~~~~~l~~l~~~~~~~g~~~eaa~  255 (291)
T 3mkr_A          182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG--RWEAAEGVLQEALDK----DSGHPETLINLVVLSQHLGKPPEVTN  255 (291)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            456777888888899999999999999999999  999999999999999    99999999999999999999987 56


Q ss_pred             HHHHHHHhhCCCCHHHH
Q 033440           92 TDAEEALKLCPTNVKVV  108 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~  108 (119)
                      ..++++++++|+++.+.
T Consensus       256 ~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          256 RYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhCCCChHHH
Confidence            78899999999998765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.30  E-value=2.3e-11  Score=84.25  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=85.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++.+...+|+++..+..+|.+++..|  ++++|+..+++++..    .|+++.++..+|.++..+|++++|+.
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~   92 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDEAED   92 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHHHHH
Confidence            356778888888999999999999999999998  999999999999999    89999999999999999999999999


Q ss_pred             HHHHHHhhCC---CCHHHHHHhh
Q 033440           93 DAEEALKLCP---TNVKVVILCS  112 (119)
Q Consensus        93 ~~~~al~l~p---~~~~a~~~~a  112 (119)
                      .++++++++|   ++..++..++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           93 DFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcccChHHHHHHHH
Confidence            9999999999   8888887774

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.30  E-value=7.9e-13  Score=98.02  Aligned_cols=83  Identities=31%  Similarity=0.412  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ++.+..+..+|..+++.|  +|++|+..|++++++    +|+++.++.++|.++..+|+|++|+..++++++++|++..+
T Consensus         3 ~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   76 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   76 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence            456778888999999998  999999999999999    99999999999999999999999999999999999999999


Q ss_pred             HHHhhccCc
Q 033440          108 VILCSGSHP  116 (119)
Q Consensus       108 ~~~~a~~~~  116 (119)
                      ++++|.+|.
T Consensus        77 ~~~lg~~~~   85 (477)
T 1wao_1           77 YYRRAASNM   85 (477)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=4.5e-11  Score=82.79  Aligned_cols=97  Identities=16%  Similarity=0.130  Sum_probs=71.2

Q ss_pred             hhhHHhHHHHHHhcH---HHHHHHHHH------------HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHH
Q 033440           14 ESEKADLDAIAALKE---SAAIELKEK------------GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRA   78 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~---~~~~~~~~~------------g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a   78 (119)
                      +++...++.+...+|   +....+..+            |..++..|  ++++|+..+++++..    .|.++.++..+|
T Consensus        88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~~  161 (359)
T 3ieg_A           88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--DYTAAITFLDKILEV----CVWDAELRELRA  161 (359)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh----CCCchHHHHHHH
Confidence            345556666666667   666666655            57777777  778888888887777    777777777777


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           79 HVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  199 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY  199 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            77777788888888888877777777777777776653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.28  E-value=2.2e-11  Score=78.40  Aligned_cols=101  Identities=11%  Similarity=-0.038  Sum_probs=81.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc-----------------------------
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV-----------------------------   64 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~-----------------------------   64 (119)
                      +++...++++...+|+++.++..+|..+...|  ++++|+..+++++...|                             
T Consensus        23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  100 (176)
T 2r5s_A           23 AQALNVIQTLSDELQSRGDVKLAKADCLLETK--QFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQE  100 (176)
T ss_dssp             HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--CHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--CHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence            45667778888889999999999999999988  88888877666544321                             


Q ss_pred             -CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC--HHHHHHhhccCc
Q 033440           65 -LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN--VKVVILCSGSHP  116 (119)
Q Consensus        65 -~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~--~~a~~~~a~~~~  116 (119)
                       ..+|+++.+++++|.++..+|++++|+..++++++++|++  ..+++.+|.++.
T Consensus       101 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A          101 LAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence             0167888899999999999999999999999999999876  568888887653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.27  E-value=2.7e-11  Score=80.87  Aligned_cols=80  Identities=13%  Similarity=0.102  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH-
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN---SVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK-  106 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~-  106 (119)
                      +..++.+|..++..|  +|++|+..|++++..    .|.+   ..+++.+|.+++.+|+|++|+..++++++.+|+++. 
T Consensus         4 ~~~~~~~a~~~~~~g--~~~~A~~~~~~~~~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~   77 (225)
T 2yhc_A            4 PNEIYATAQQKLQDG--NWRQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI   77 (225)
T ss_dssp             HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence            567899999999999  999999999999998    6654   578999999999999999999999999999998864 


Q ss_pred             --HHHHhhccCc
Q 033440          107 --VVILCSGSHP  116 (119)
Q Consensus       107 --a~~~~a~~~~  116 (119)
                        +++.+|.++.
T Consensus        78 ~~a~~~~g~~~~   89 (225)
T 2yhc_A           78 DYVMYMRGLTNM   89 (225)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence              8999988764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.27  E-value=4.3e-12  Score=76.79  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++|+..|++++++.+. +|+++.+++++|.++..+|+|++|+..++++++++|+++.+++.+|.++.
T Consensus         5 ~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY   72 (117)
T ss_dssp             --CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            899999999999998111 28899999999999999999999999999999999999999999998874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.26  E-value=3.5e-11  Score=83.43  Aligned_cols=98  Identities=18%  Similarity=0.127  Sum_probs=81.6

Q ss_pred             ChhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccCCCcch------HHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESA------AIELKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVLSDSEN------SVLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~   79 (119)
                      .++++..++++..+.+..      +..+..+|.++... |  ++++|+..|++++++    .|..      ..++.++|.
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--~~~~A~~~~~~Al~~----~~~~~~~~~~~~~~~~lg~  166 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--DYAKAIDCYELAGEW----YAQDQSVALSNKCFIKCAD  166 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHH----HHhCCChHHHHHHHHHHHH
Confidence            345677778877776653      67899999999996 9  999999999999999    5543      567999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhhCCCCHH-------HHHHhhccCc
Q 033440           80 VNLLLGNYRRAFTDAEEALKLCPTNVK-------VVILCSGSHP  116 (119)
Q Consensus        80 ~~~~l~~~~~A~~~~~~al~l~p~~~~-------a~~~~a~~~~  116 (119)
                      ++..+|+|++|+..+++++++.|++..       +++++|.++.
T Consensus       167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  210 (292)
T 1qqe_A          167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL  210 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999987643       5777777664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.26  E-value=5.3e-11  Score=85.48  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=86.9

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..++.+...+|+++..+..+|.+++..|  ++++|+..|.+++..    +|+++.++..+|.++..+|++++|+.
T Consensus        42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~  115 (450)
T 2y4t_A           42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMG--KSKAALPDLTKVIQL----KMDFTAARLQRGHLLLKQGKLDEAED  115 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            346778888888899999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCH---HHHHHhh
Q 033440           93 DAEEALKLCPTNV---KVVILCS  112 (119)
Q Consensus        93 ~~~~al~l~p~~~---~a~~~~a  112 (119)
                      .++++++++|++.   .++..++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~l~  138 (450)
T 2y4t_A          116 DFKKVLKSNPSENEEKEAQSQLI  138 (450)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChhhHHHHHHHH
Confidence            9999999999988   7776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=4.5e-11  Score=90.51  Aligned_cols=99  Identities=10%  Similarity=-0.026  Sum_probs=89.2

Q ss_pred             CCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhc----------HHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH----------YSDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      +.++++++.++.+..++|++..+|..+|.++...|  +          +++++..+++++..    +|.+..+|++|+.+
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~--~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w~  116 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWL  116 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcc--cccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence            34667788899999999999999999999999887  6          99999999999999    99999999999999


Q ss_pred             HHHhc--CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           81 NLLLG--NYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        81 ~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +.+++  +|++++..+.++++++|.|..+|..++.++
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l  153 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  153 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHH
Confidence            99999  779999999999999999999999888654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.26  E-value=9.9e-12  Score=80.10  Aligned_cols=66  Identities=17%  Similarity=0.148  Sum_probs=62.6

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNY----------RRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~----------~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      .|++|+..|++++++    +|+++.++.++|.++..++++          ++|+..|+++|+++|++..+|+++|.+|..
T Consensus        17 ~feeA~~~~~~Ai~l----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            899999999999999    999999999999999999875          599999999999999999999999998853

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.25  E-value=7.4e-11  Score=70.79  Aligned_cols=80  Identities=24%  Similarity=0.363  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      .++..+|..++..|  ++++|+..+.+++..    .|.++.++..+|.++...|++++|+..+++++..+|.+..+++.+
T Consensus         2 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   75 (136)
T 2fo7_A            2 EAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL   75 (136)
T ss_dssp             HHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHcC--cHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            46788999999998  999999999999999    899999999999999999999999999999999999999999999


Q ss_pred             hccCcC
Q 033440          112 SGSHPN  117 (119)
Q Consensus       112 a~~~~~  117 (119)
                      |.++..
T Consensus        76 ~~~~~~   81 (136)
T 2fo7_A           76 GNAYYK   81 (136)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            887643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.23  E-value=7e-11  Score=87.72  Aligned_cols=97  Identities=12%  Similarity=0.051  Sum_probs=71.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++++..++|.+...+..+|..+.+.|  ++++|+..|++++..    .|.++.++..+|.++.+.|++++|+..
T Consensus       390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~  463 (597)
T 2xpi_A          390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG--EHDQAISAYTTAARL----FQGTHLPYLFLGMQHMQLGNILLANEY  463 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT----TTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            34556666666667777777777777777777  777777777777777    777777777777777777777777777


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCc
Q 033440           94 AEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++++++|.++.+|..+|.++.
T Consensus       464 ~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          464 LQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHH
Confidence            77777777777777777776653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=7.6e-11  Score=79.16  Aligned_cols=103  Identities=17%  Similarity=0.064  Sum_probs=86.4

Q ss_pred             ChhhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHH
Q 033440           13 TESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHV   80 (119)
Q Consensus        13 ~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~   80 (119)
                      .++++..++++..+        +|..+..+..+|..++..|  ++++|+..|.+++.+..    ...|..+.++.++|.+
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            44566666666552        4889999999999999999  99999999999998731    1147788999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhh--------CCCCHHHHHHhhccCcC
Q 033440           81 NLLLGNYRRAFTDAEEALKL--------CPTNVKVVILCSGSHPN  117 (119)
Q Consensus        81 ~~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~~  117 (119)
                      +..+|++++|+..+++++.+        +|....+++.+|.++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  139 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN  139 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999998        57778899999987754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.21  E-value=5.3e-11  Score=79.47  Aligned_cols=99  Identities=11%  Similarity=0.100  Sum_probs=82.6

Q ss_pred             ChhhHHhHHHHHHhcHHHH---HHHHHHHHHHHH------------------hChhcHHHHHHHHHHHHhhccCCCcchH
Q 033440           13 TESEKADLDAIAALKESAA---IELKEKGNEYVK------------------KGKKHYSDAIDCYTRAINQNVLSDSENS   71 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~------------------~g~~~~~~A~~~~~~al~~~~~~~~~~~   71 (119)
                      .++++..++++...+|++.   .++..+|.+++.                  .|  ++++|+..|++++..    .|+++
T Consensus        57 ~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~l~~----~P~~~  130 (225)
T 2yhc_A           57 LPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQ--QARAAFSDFSKLVRG----YPNSQ  130 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCH--HHHHHHHHHHHHHTT----CTTCT
T ss_pred             HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcH--HHHHHHHHHHHHHHH----CcCCh
Confidence            3567788888888888765   478899998886                  45  899999999999999    77766


Q ss_pred             HHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHhhCCCCH---HHHHHhhccCcC
Q 033440           72 VLY-----------------ANRAHVNLLLGNYRRAFTDAEEALKLCPTNV---KVVILCSGSHPN  117 (119)
Q Consensus        72 ~~~-----------------~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~a~~~~~  117 (119)
                      .+.                 ..+|.+++..|++.+|+..++++++..|+++   .+++.+|.++..
T Consensus       131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence            433                 6789999999999999999999999999986   679999888753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=1.1e-10  Score=81.32  Aligned_cols=96  Identities=17%  Similarity=0.097  Sum_probs=76.4

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHH-------hChhcH-------HHHHHHHHHHHh-hccCCCcchHHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHY-------SDAIDCYTRAIN-QNVLSDSENSVLYANRA   78 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~-------~~A~~~~~~al~-~~~~~~~~~~~~~~~~a   78 (119)
                      ++.+..+++++..+|.++..|...|..+..       .|  ++       ++|+..|++++. +    .|++..++.++|
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~A~~~~~rAl~~~----~p~~~~~~~~~~  106 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYA  106 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHTTT----TTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhcc--chhhcccchHHHHHHHHHHHHHh----CcccHHHHHHHH
Confidence            345567888888888888888888888764       35  64       888888888888 7    788888888888


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhCCCCHH-HHHHhhccC
Q 033440           79 HVNLLLGNYRRAFTDAEEALKLCPTNVK-VVILCSGSH  115 (119)
Q Consensus        79 ~~~~~l~~~~~A~~~~~~al~l~p~~~~-a~~~~a~~~  115 (119)
                      .++...|++++|+..|+++++++|.++. +|..+|.++
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  144 (308)
T 2ond_A          107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence            8888888888888888888888888775 777777654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=6.5e-11  Score=79.48  Aligned_cols=101  Identities=18%  Similarity=0.102  Sum_probs=86.1

Q ss_pred             hhhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHH
Q 033440           14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVN   81 (119)
Q Consensus        14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~   81 (119)
                      +++...+.++..+        +|..+..+..+|.++...|  ++++|+..|.+++.+..    ..+|....++.++|.++
T Consensus        60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  137 (283)
T 3edt_B           60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC  137 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            4566666776655        5888999999999999999  99999999999998731    11478889999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhh--------CCCCHHHHHHhhccCc
Q 033440           82 LLLGNYRRAFTDAEEALKL--------CPTNVKVVILCSGSHP  116 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~  116 (119)
                      ..+|++++|+..+++++++        +|....+++.+|.++.
T Consensus       138 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  180 (283)
T 3edt_B          138 QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL  180 (283)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999        7777889999988764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.17  E-value=1.8e-10  Score=80.20  Aligned_cols=95  Identities=8%  Similarity=0.030  Sum_probs=83.0

Q ss_pred             hhhHHhHHHHHH-hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH-HHHHHHHHHHHhcCHHHHH
Q 033440           14 ESEKADLDAIAA-LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV-LYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        14 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~a~~~~~l~~~~~A~   91 (119)
                      +++...++++.. ++|+....|...|..+...|  ++++|...|++++++    .|.++. ++.++|.++.+.|++++|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~A~  154 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHhcCHHHHH
Confidence            567888899888 79999999999999999988  999999999999999    888886 8999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhcc
Q 033440           92 TDAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ..++++++++|.+..+|...+..
T Consensus       155 ~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          155 MIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Confidence            99999999888887777665543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.17  E-value=4.7e-11  Score=86.74  Aligned_cols=96  Identities=16%  Similarity=0.071  Sum_probs=60.1

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH------HHHHHHHHHHH---h
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV------LYANRAHVNLL---L   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~a~~~~~---l   84 (119)
                      +++...++.+...+|..+..+..+|..+...|  ++++|+..|.+++..    .|.++.      ++.++|.++..   +
T Consensus       355 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~  428 (514)
T 2gw1_A          355 DDCETLFSEAKRKFPEAPEVPNFFAEILTDKN--DFDKALKQYDLAIEL----ENKLDGIYVGIAPLVGKATLLTRNPTV  428 (514)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----hhccchHHHHHHHHHHHHHHHhhhhhc
Confidence            34555556666666666666666666666666  666666666666666    444432      66666666666   6


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |++++|+..+++++.++|+++.+++.+|.++
T Consensus       429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  459 (514)
T 2gw1_A          429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMK  459 (514)
T ss_dssp             THHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            6666666666666666666666666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.16  E-value=1.4e-10  Score=80.34  Aligned_cols=90  Identities=10%  Similarity=0.042  Sum_probs=75.7

Q ss_pred             HHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH----
Q 033440           21 DAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE----   96 (119)
Q Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~----   96 (119)
                      ..+...-|+....+..+|..+...|  ++++|+..|++++..    +|+++.+++++|.++..+|++++|+..+++    
T Consensus       107 ~~l~~~lp~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          107 ALLDXVLPREEELXAQQAMQLMQES--NYTDALPLLXDAWQL----SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             HHHHHHcCCchhhHHHHHHHHHhCC--CHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            3344445888899999999999999  999999999999999    999999999999999999999988765554    


Q ss_pred             ------------------------------HHhhCCCCHHHHHHhhccCc
Q 033440           97 ------------------------------ALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        97 ------------------------------al~l~p~~~~a~~~~a~~~~  116 (119)
                                                    ++.++|++..+++.+|.++.
T Consensus       181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~  230 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH  230 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence                                          46667777777777777653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.15  E-value=3.7e-10  Score=79.77  Aligned_cols=100  Identities=15%  Similarity=-0.031  Sum_probs=69.3

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHH----HHh---
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVN----LLL---   84 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~----~~l---   84 (119)
                      .+++++..++.++.++|++..+|..+|.++...|++++++++..++.+|..    +|.+..+++.|+.++    ..+   
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhcccc
Confidence            455667777777777777777777777777665412677777777777777    777777777777777    555   


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++++++..+.++++.+|.|..+|+.++.++
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl  154 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLV  154 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5677777777777777777777776666543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.15  E-value=2.1e-10  Score=79.46  Aligned_cols=89  Identities=12%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             ChhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-------HHHHHHHH
Q 033440           13 TESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-------VLYANRAH   79 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~a~   79 (119)
                      .++++..++++..+.|..      +..+..+|..+...|  +|++|+..|++++.+    .|.+.       .++.++|.
T Consensus       134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~lg~  207 (292)
T 1qqe_A          134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--QYIEASDIYSKLIKS----SMGNRLSQWSLKDYFLKKGL  207 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TSSCTTTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH----HhcCCcccHHHHHHHHHHHH
Confidence            457788888888887754      677899999999999  999999999999999    54433       37899999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           80 VNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        80 ~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      |+..+|++++|+..+++++.++|++...
T Consensus       208 ~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          208 CQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9999999999999999999999987653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.14  E-value=2.3e-10  Score=80.82  Aligned_cols=99  Identities=9%  Similarity=-0.105  Sum_probs=91.1

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHH----HHh---ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEY----VKK---GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~---g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l   84 (119)
                      ..++++..++.++..+|+...+|..++.++    ...   +  ++++++..++++++.    +|.+..++..|+.+...+
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~--~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l  157 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF--DPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTF  157 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC--CTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHh
Confidence            356788999999999999999999999999    665   6  899999999999999    999999999999999999


Q ss_pred             cCHH--HHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           85 GNYR--RAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~--~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |.++  +++..+.++++.+|.|..||..++.++.
T Consensus       158 ~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          158 DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF  191 (306)
T ss_dssp             TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9998  9999999999999999999999887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.13  E-value=1.5e-10  Score=87.62  Aligned_cols=100  Identities=10%  Similarity=0.040  Sum_probs=92.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-CHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAF   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~   91 (119)
                      .+++++.++.+...+|+...+|..++.++.+.++.+|++++..+++++++    +|.+..+|.+|+.+...+| .+++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~----d~~N~~aW~~R~~~l~~l~~~~~~el  164 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEEL  164 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh----ccccccHHHHHHHHHHHcCCChHHHH
Confidence            45788899999999999999999999999998732459999999999999    9999999999999999999 999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +++.++++.+|.+..+|+.++.++.
T Consensus       165 ~~~~~~I~~~p~n~saW~~r~~ll~  189 (567)
T 1dce_A          165 AFTDSLITRNFSNYSSWHYRSCLLP  189 (567)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCccHHHHHHHHHH
Confidence            9999999999999999999998754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.13  E-value=6.4e-10  Score=79.34  Aligned_cols=98  Identities=9%  Similarity=0.009  Sum_probs=90.6

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC-HHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN-YRRAFT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~-~~~A~~   92 (119)
                      ++++..++.+...+|++..+|..++.++...++.++++++..++++++.    +|.|..++.+|+.+...+|. +++++.
T Consensus        91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A           91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            4678889999999999999999999999998721389999999999999    99999999999999999999 699999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccC
Q 033440           93 DAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      .+.++++.+|.|..+|..++.++
T Consensus       167 ~~~~~I~~~p~N~SAW~~R~~ll  189 (331)
T 3dss_A          167 FTDSLITRNFSNYSSWHYRSCLL  189 (331)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHH
Confidence            99999999999999999998765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=3.5e-10  Score=81.88  Aligned_cols=100  Identities=18%  Similarity=0.075  Sum_probs=81.5

Q ss_pred             hhhHHhHHHHHHh---------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHH
Q 033440           14 ESEKADLDAIAAL---------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHV   80 (119)
Q Consensus        14 ~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~   80 (119)
                      +++++.++++..+         +|..+..+.++|.+++..|  ++++|+.+|++++.+.+.    ..+..+.++.++|.+
T Consensus        68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~  145 (472)
T 4g1t_A           68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT  145 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence            4566667776655         4555778899999999999  999999999999987332    145677889999998


Q ss_pred             HHHhc--CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           81 NLLLG--NYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        81 ~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +..+|  +|++|+..|+++++++|+++.+++.+|.++
T Consensus       146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~  182 (472)
T 4g1t_A          146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS  182 (472)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            88765  699999999999999999999998887654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.12  E-value=6.3e-10  Score=79.37  Aligned_cols=100  Identities=9%  Similarity=-0.038  Sum_probs=92.2

Q ss_pred             CCCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhc----------HHHHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 033440           10 EPKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKH----------YSDAIDCYTRAINQNVLSDSENSVLYANRAH   79 (119)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~   79 (119)
                      .+.+++++..++.++.++|++..+|..++.++...+  .          +++++..++.++..    +|.+..+++.|+.
T Consensus        43 ~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~--~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~w  116 (331)
T 3dss_A           43 GELDESVLELTSQILGANPDFATLWNCRREVLQHLE--TEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCW  116 (331)
T ss_dssp             TCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhc--ccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence            355778899999999999999999999999998876  4          78999999999999    9999999999999


Q ss_pred             HHHHhcC--HHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           80 VNLLLGN--YRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        80 ~~~~l~~--~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++..+++  +++++..+.++++.+|.|..+|..++.++
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999994  99999999999999999999999988654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=2.8e-10  Score=82.37  Aligned_cols=98  Identities=10%  Similarity=-0.017  Sum_probs=82.0

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC--hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKG--KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++++.+.++..++|+++..+..+|..+...+  .+++++|+..|++++..    +|.++.++.++|.++...|++++|+.
T Consensus       193 ~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~  268 (472)
T 4g1t_A          193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAIE  268 (472)
T ss_dssp             CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHHH
Confidence            4667777888888888888888877665432  12778899999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .++++++++|++..+++.+|.+|.
T Consensus       269 ~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          269 LLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHH
Confidence            999999999999999999998763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.11  E-value=5.1e-10  Score=79.62  Aligned_cols=101  Identities=12%  Similarity=0.023  Sum_probs=77.3

Q ss_pred             hhhHHhHHHHHHh-------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHh
Q 033440           14 ESEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l   84 (119)
                      ++++..+.++..+       .+..+..+..+|.++...|  +|++|+..|.+++.+.+..  .+....++.++|.++..+
T Consensus       160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            3455556666655       5666778889999999988  9999999999999873321  223346888899999999


Q ss_pred             cCHHHHHHHHHHHHh-----hC-CCCHHHHHHhhccCc
Q 033440           85 GNYRRAFTDAEEALK-----LC-PTNVKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~~A~~~~~~al~-----l~-p~~~~a~~~~a~~~~  116 (119)
                      |++++|+..++++++     .+ |....+++.+|.++.
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY  275 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            999999999999988     46 777888888888764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.11  E-value=6.3e-10  Score=79.87  Aligned_cols=100  Identities=10%  Similarity=-0.021  Sum_probs=92.7

Q ss_pred             CCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh-c-CHH
Q 033440           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL-G-NYR   88 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l-~-~~~   88 (119)
                      +.++++++.++.++.++|++..+|..++.++...|+ ++++++..++.+|..    +|.+..+++.|+.++..+ + +++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCChH
Confidence            356789999999999999999999999999999872 499999999999999    999999999999999998 8 999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           89 RAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++..+.++++.+|.|..+|..++.++
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl  169 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLY  169 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.10  E-value=4.3e-11  Score=77.03  Aligned_cols=79  Identities=11%  Similarity=0.043  Sum_probs=66.0

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ||+....+..+|..++..|  ++++|+..|++++..    +|+++.+++++|.++...|++++|+..+++++..+| ++.
T Consensus         2 ~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~   74 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQG--EHAQALNVIQTLSDE----LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS   74 (176)
T ss_dssp             ----CTTHHHHHHHHHHTT--CHHHHHHHHHTSCHH----HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred             CCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence            3445567888999999999  999999999999999    999999999999999999999999998888888877 665


Q ss_pred             HHHHhh
Q 033440          107 VVILCS  112 (119)
Q Consensus       107 a~~~~a  112 (119)
                      .+...+
T Consensus        75 ~~~~~~   80 (176)
T 2r5s_A           75 YKSLIA   80 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.10  E-value=8.5e-10  Score=70.54  Aligned_cols=83  Identities=17%  Similarity=0.059  Sum_probs=72.4

Q ss_pred             HhcHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCC-c-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           25 ALKESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      +.++.+.++.++.|+++.+.. +.+.++++..++..+..    + | .+..++|++|..++++|+|++|+..++++|+++
T Consensus        26 ~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           26 AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            345667899999999999865 23566999999999999    7 7 678999999999999999999999999999999


Q ss_pred             CCCHHHHHHh
Q 033440          102 PTNVKVVILC  111 (119)
Q Consensus       102 p~~~~a~~~~  111 (119)
                      |+|..+...+
T Consensus       102 P~n~QA~~Lk  111 (152)
T 1pc2_A          102 PQNNQAKELE  111 (152)
T ss_dssp             TTCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.09  E-value=1e-10  Score=80.85  Aligned_cols=102  Identities=13%  Similarity=0.099  Sum_probs=80.9

Q ss_pred             hhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---CCCcchHHHHHHHHHHHHHh
Q 033440           14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---LSDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~a~~~~~l   84 (119)
                      ++++..+.++..+.+      ..+..+..+|.+++..|  +|++|+.+|.+++....   ...+..+.+++++|.+|..+
T Consensus       132 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             HHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            456666777665421      23557999999999999  99999999999996422   22456667999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCC------HHHHHHhhccCcC
Q 033440           85 GNYRRAFTDAEEALKLCPTN------VKVVILCSGSHPN  117 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~~  117 (119)
                      |+|++|+..+++++++.+..      ..+++.+|.++..
T Consensus       210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  248 (293)
T 3u3w_A          210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999986543      7889999988753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.08  E-value=5.7e-10  Score=66.82  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           51 DAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        51 ~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +|+..|.+++..    +|+++.+++++|.++...|++++|+..++++++++|++..+|+.+|.++.
T Consensus         3 ~a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            3 AITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             CHHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            578999999999    99999999999999999999999999999999999999999999998874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.04  E-value=1.2e-09  Score=74.40  Aligned_cols=101  Identities=19%  Similarity=0.153  Sum_probs=85.0

Q ss_pred             hhhHHhHHHHHHh--------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHH
Q 033440           14 ESEKADLDAIAAL--------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVN   81 (119)
Q Consensus        14 ~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~   81 (119)
                      +++...++++..+        ++..+..+..+|..+...|  ++++|+..+.+++.+..    ...|....++.++|.++
T Consensus        86 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  163 (311)
T 3nf1_A           86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC  163 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            3455666666655        5888999999999999999  99999999999998721    11477889999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhh--------CCCCHHHHHHhhccCc
Q 033440           82 LLLGNYRRAFTDAEEALKL--------CPTNVKVVILCSGSHP  116 (119)
Q Consensus        82 ~~l~~~~~A~~~~~~al~l--------~p~~~~a~~~~a~~~~  116 (119)
                      ..+|++++|+..+++++++        +|....+++.+|.++.
T Consensus       164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  206 (311)
T 3nf1_A          164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL  206 (311)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998        7777888888888764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.04  E-value=9.1e-10  Score=64.87  Aligned_cols=74  Identities=12%  Similarity=0.038  Sum_probs=65.5

Q ss_pred             cHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           27 KESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      +|+++..+..+|..++..+ +....+|...+.+++.+    +|+++.+.+.+|..++..|+|++|+..++++++.+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4567888999999997655 11279999999999999    99999999999999999999999999999999999974

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.03  E-value=5.1e-10  Score=77.32  Aligned_cols=99  Identities=12%  Similarity=0.092  Sum_probs=75.8

Q ss_pred             hhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc----hHHHHHHHHHHHHHh
Q 033440           15 SEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE----NSVLYANRAHVNLLL   84 (119)
Q Consensus        15 ~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~a~~~~~l   84 (119)
                      +++..+.++..+.      ...+.++..+|..+...|  +|++|+..|.+++.+... .|+    ...+++++|.+|..+
T Consensus       133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~kal~~~~~-~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 2qfc_A          133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--YLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh-cCccccchHHHHHhHHHHHHHH
Confidence            4555555554332      223678999999999998  999999999999954211 333    236899999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCC------CHHHHHHhhccCc
Q 033440           85 GNYRRAFTDAEEALKLCPT------NVKVVILCSGSHP  116 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~------~~~a~~~~a~~~~  116 (119)
                      |+|++|+..+++++++.+.      ...+++.+|.++.
T Consensus       210 ~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~  247 (293)
T 2qfc_A          210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR  247 (293)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            9999999999999987643      2678888888774

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=1.5e-09  Score=71.98  Aligned_cols=96  Identities=6%  Similarity=-0.118  Sum_probs=82.9

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHH--
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLL--   83 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~--   83 (119)
                      -.++++..+.++.  ++.++.++..+|..+..    .+  ++++|+..|+++++.    .|  .++.+++++|.+|..  
T Consensus        68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~--d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~  139 (212)
T 3rjv_A           68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGAT--DVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGV  139 (212)
T ss_dssp             CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCcc--CHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCC
Confidence            3556777777764  45678899999999987    77  999999999999999    77  469999999999999  


Q ss_pred             --hcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           84 --LGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        84 --l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                        .+++++|+..+++++++ |.++.+++.+|.+|.
T Consensus       140 g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          140 HGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             SSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence              88999999999999999 778889999998874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.02  E-value=3.3e-10  Score=77.24  Aligned_cols=95  Identities=14%  Similarity=0.064  Sum_probs=80.1

Q ss_pred             HHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           21 DAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ......+|..+..+..+|..++..|  ++++|+..+++++.+...    ..|..+.++..+|.++..+|++++|+..+++
T Consensus        17 q~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (311)
T 3nf1_A           17 QGGGYEIPARLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND   94 (311)
T ss_dssp             SSSCTTSCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3334457888999999999999999  999999999999984211    1678889999999999999999999999999


Q ss_pred             HHhh--------CCCCHHHHHHhhccCcC
Q 033440           97 ALKL--------CPTNVKVVILCSGSHPN  117 (119)
Q Consensus        97 al~l--------~p~~~~a~~~~a~~~~~  117 (119)
                      ++.+        +|....+++.+|.++..
T Consensus        95 al~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (311)
T 3nf1_A           95 ALAIREKTLGKDHPAVAATLNNLAVLYGK  123 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            9987        46667888888887653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.01  E-value=8.3e-11  Score=69.37  Aligned_cols=78  Identities=15%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcch------HHHHHHHHHHHHHhcC
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSEN------SVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~a~~~~~l~~   86 (119)
                      .++++..++++..++|.++..+..+|.+++..|  +|++|+..|++++.+    +|++      ..+++++|.++..+|+
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLG--EYTQAIQMCQQGLRY----TSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence            357888899999999999999999999999999  999999999999999    8888      8899999999999999


Q ss_pred             HHHHHHHHHH
Q 033440           87 YRRAFTDAEE   96 (119)
Q Consensus        87 ~~~A~~~~~~   96 (119)
                      +++|+..+++
T Consensus        94 ~~~a~~~~~~  103 (111)
T 2l6j_A           94 VQIPVVEVDE  103 (111)
T ss_dssp             CCCCSSSSSS
T ss_pred             HhhhHhHHHH
Confidence            8888776554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.00  E-value=1.6e-09  Score=75.50  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=68.2

Q ss_pred             hhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhc
Q 033440           14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~   85 (119)
                      ++++..++++..+.+      ..+..+..+|.++.. |  ++++|+..|++++++.+...  +....++.++|.++..+|
T Consensus        93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g  169 (307)
T 2ifu_A           93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L--DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ  169 (307)
T ss_dssp             GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence            456666666665532      346778888888877 7  88888888888888722210  112567888888888888


Q ss_pred             CHHHHHHHHHHHHhhCCCC------HHHHHHhhccCc
Q 033440           86 NYRRAFTDAEEALKLCPTN------VKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~  116 (119)
                      +|++|+..+++++++.|.+      ..+++.+|.++.
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence            8888888888888876543      235666665553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.97  E-value=3.4e-09  Score=75.40  Aligned_cols=100  Identities=16%  Similarity=0.015  Sum_probs=75.9

Q ss_pred             hhHHhHHHHHHh-------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440           15 SEKADLDAIAAL-------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        15 ~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~   85 (119)
                      .++..+.++..+       .+..+..+..+|.++...|  +|++|+..|.+++.+.+..  .+....++.++|.++..+|
T Consensus       159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~  236 (378)
T 3q15_A          159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG  236 (378)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            444555555543       2346778888999999988  9999999999999863321  2234568888999999999


Q ss_pred             CHHHHHHHHHHHHh-----hCCCCHHHHHHhhccCc
Q 033440           86 NYRRAFTDAEEALK-----LCPTNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~-----l~p~~~~a~~~~a~~~~  116 (119)
                      ++++|+..++++++     .+|....+++.+|.++.
T Consensus       237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence            99999999999988     67777888888888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.96  E-value=9.1e-09  Score=73.12  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=78.1

Q ss_pred             hhhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-C-cchHHHHHHHHHHHHHhc
Q 033440           14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-D-SENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~a~~~~~l~   85 (119)
                      +++...+.++..+.      +..+..+..+|.++...|  ++++|+..|.+++.+.+.. + |..+.++.++|.++..+|
T Consensus       201 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  278 (383)
T 3ulq_A          201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG  278 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCC
Confidence            45666666666553      344578999999999999  9999999999999942221 5 888999999999999999


Q ss_pred             CHHHHHHHHHHHHhhC-----CCCHHHHHHhhccCc
Q 033440           86 NYRRAFTDAEEALKLC-----PTNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~-----p~~~~a~~~~a~~~~  116 (119)
                      ++++|+..+++++++.     |.....+..+|.++.
T Consensus       279 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~  314 (383)
T 3ulq_A          279 KIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL  314 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999999999999984     333333444555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.96  E-value=5.7e-10  Score=64.94  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=70.3

Q ss_pred             ChhhHHhHHHHHHhcHHHHH-HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           13 TESEKADLDAIAALKESAAI-ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      .++++..++++...+|+++. .+..+|.+++..|  ++++|+..|.+++.+    +|+++.++.+        +.+.+++
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~--------~~~~~a~   81 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG--DWQKALNNYQSAIEL----NPDSPALQAR--------KMVMDIL   81 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTSTHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCCcHHHHHH--------HHHHHHH
Confidence            35678889999999999999 9999999999999  999999999999999    9999888754        7788999


Q ss_pred             HHHHHHHhhCCCCH
Q 033440           92 TDAEEALKLCPTNV  105 (119)
Q Consensus        92 ~~~~~al~l~p~~~  105 (119)
                      ..+++++.++|++.
T Consensus        82 ~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           82 NFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHCCTTHHHHCCS
T ss_pred             HHHHHHhccCcccc
Confidence            99999999888764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.96  E-value=8.5e-09  Score=69.93  Aligned_cols=76  Identities=14%  Similarity=0.035  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhC
Q 033440           30 AAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        30 ~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~  101 (119)
                      ++.++..+|..+..    .+  ++++|+..|.++++.    .  ++.+++++|.++..    .+++++|+..++++++.+
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDL----N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHC----C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence            34455555555555    55  555555555555554    2  44455555555555    555555555555555442


Q ss_pred             CCCHHHHHHhhccC
Q 033440          102 PTNVKVVILCSGSH  115 (119)
Q Consensus       102 p~~~~a~~~~a~~~  115 (119)
                        ++.+++.+|.+|
T Consensus       109 --~~~a~~~lg~~~  120 (273)
T 1ouv_A          109 --YAEGCASLGGIY  120 (273)
T ss_dssp             --CHHHHHHHHHHH
T ss_pred             --CccHHHHHHHHH
Confidence              445555555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.94  E-value=3.2e-09  Score=74.78  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=71.1

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+..+..+..+|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++..+|++++|+..+++++.+.|..
T Consensus       183 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            5667788999999999998  9999999999999883331  12233488999999999999999999999999887655


Q ss_pred             ------HHHHHHhhccCc
Q 033440          105 ------VKVVILCSGSHP  116 (119)
Q Consensus       105 ------~~a~~~~a~~~~  116 (119)
                            ..+++.+|.++.
T Consensus       261 ~~~~~~~~~~~~la~~~~  278 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYT  278 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHH
Confidence                  667778877664

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.94  E-value=7.9e-09  Score=63.59  Aligned_cols=101  Identities=12%  Similarity=0.142  Sum_probs=75.8

Q ss_pred             hhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440           14 ESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~   85 (119)
                      ++++..+.++..+.++.      +..+..+|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++..+|
T Consensus        26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  103 (164)
T 3ro3_A           26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ  103 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            45666666666655443      358899999999999  9999999999999873321  1223678999999999999


Q ss_pred             CHHHHHHHHHHHHhhCC------CCHHHHHHhhccCc
Q 033440           86 NYRRAFTDAEEALKLCP------TNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p------~~~~a~~~~a~~~~  116 (119)
                      ++++|+..+++++++.+      ....+++.+|.++.
T Consensus       104 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A          104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence            99999999999998742      12456677776653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.92  E-value=3.4e-09  Score=75.33  Aligned_cols=84  Identities=19%  Similarity=0.305  Sum_probs=65.2

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS----VLYANRAHVNLLLGNYRRAFTDAEEALKL--  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~a~~~~~l~~~~~A~~~~~~al~l--  100 (119)
                      ++..+..+..+|..++..|  ++++|+..|++++.+    .|.++    .++..+|.++..+|++++|+..+++++.+  
T Consensus        44 ~~~~~~~l~~~g~~~~~~g--~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  117 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAG--DCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK  117 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3566777788888888887  888888888888888    66654    57788888888888888888888888877  


Q ss_pred             ----CCCCHHHHHHhhccCc
Q 033440          101 ----CPTNVKVVILCSGSHP  116 (119)
Q Consensus       101 ----~p~~~~a~~~~a~~~~  116 (119)
                          +|....+++.+|.++.
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A          118 SMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHH
T ss_pred             HccCchHHHHHHHHHHHHHH
Confidence                5666777777777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.92  E-value=2.4e-09  Score=76.10  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             hhhHHhHHHHHHhcHHHH----HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcCH
Q 033440           14 ESEKADLDAIAALKESAA----IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGNY   87 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~~   87 (119)
                      ++++..++++..++|++.    ..+..+|..++..|  ++++|+..|.+++.+...  ..|....++.++|.++..+|++
T Consensus        65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  142 (411)
T 4a1s_A           65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF  142 (411)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCH
Confidence            456667777777776644    68999999999999  999999999999987322  1367788999999999999999


Q ss_pred             HHHHHHHHHHHhh------CCCCHHHHHHhhccCc
Q 033440           88 RRAFTDAEEALKL------CPTNVKVVILCSGSHP  116 (119)
Q Consensus        88 ~~A~~~~~~al~l------~p~~~~a~~~~a~~~~  116 (119)
                      ++|+..+++++++      .|....+++.+|.++.
T Consensus       143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            9999999999998      5666778888887764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.92  E-value=3.3e-09  Score=76.15  Aligned_cols=100  Identities=10%  Similarity=-0.054  Sum_probs=92.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHH---
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYR---   88 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~---   88 (119)
                      .++++..++.++..+|+...+|..++.++... + .++++++..+.++++.    +|.+..++..|+.+...+|.++   
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~-~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~  179 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP-QDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRIS  179 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-SCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccc
Confidence            46789999999999999999999999999886 2 1689999999999999    9999999999999999999988   


Q ss_pred             -----HHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           89 -----RAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 -----~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                           +++..+.++++.+|.|..||..++.++..
T Consensus       180 ~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          180 EAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence                 99999999999999999999999887643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.90  E-value=2.4e-08  Score=67.65  Aligned_cols=90  Identities=12%  Similarity=0.074  Sum_probs=56.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hc
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~   85 (119)
                      ++++..++++...+  ++.++..+|..+..    .+  ++++|+..|+++++.    .  ++.+++++|.++..    .+
T Consensus        59 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~----~--~~~a~~~lg~~~~~~~~~~~  128 (273)
T 1ouv_A           59 KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ--NTNKALQYYSKACDL----K--YAEGCASLGGIYHDGKVVTR  128 (273)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHCSSSCC
T ss_pred             HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCccc--CHHHHHHHHHHHHHc----C--CccHHHHHHHHHHcCCCccc
Confidence            44555555555543  45666666766666    66  677777777766665    3  55666666666666    66


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++|+..++++++.+  ++.+++.+|.++
T Consensus       129 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~  156 (273)
T 1ouv_A          129 DFKKAVEYFTKACDLN--DGDGCTILGSLY  156 (273)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence            6666666666666654  455666666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.88  E-value=1.8e-08  Score=70.17  Aligned_cols=90  Identities=13%  Similarity=0.055  Sum_probs=73.7

Q ss_pred             ChhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHh
Q 033440           13 TESEKADLDAIAALKESA------AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l   84 (119)
                      .++++..++++..+.+..      +..+..+|..+...|  +|++|+..|++++.+.+...  +....++.++|.|+..+
T Consensus       131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~  208 (307)
T 2ifu_A          131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ--KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR  208 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence            456778888888776643      688999999999999  99999999999999833211  11245888999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCH
Q 033440           85 GNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~  105 (119)
                      |++++|+..+++++ ++|++.
T Consensus       209 g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          209 ADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             TCHHHHHHHHHHHT-TSTTST
T ss_pred             CCHHHHHHHHHHHh-CCCCCC
Confidence            99999999999999 999754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.88  E-value=6.7e-09  Score=63.94  Aligned_cols=87  Identities=14%  Similarity=0.167  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC-
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN-  104 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-  104 (119)
                      +..+..+..+|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++..+|++++|+..+++++++.+.. 
T Consensus         6 ~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            346788999999999999  9999999999999983221  11223589999999999999999999999999876542 


Q ss_pred             -----HHHHHHhhccCc
Q 033440          105 -----VKVVILCSGSHP  116 (119)
Q Consensus       105 -----~~a~~~~a~~~~  116 (119)
                           ..+++.+|.++.
T Consensus        84 ~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence                 567777777653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.88  E-value=7.7e-09  Score=68.54  Aligned_cols=89  Identities=18%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc----CHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----NYRRAF   91 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----~~~~A~   91 (119)
                      +...+.++...  .++.++..+|..++..+  ++++|+..|+++++.      .++.+++++|.+|.. +    ++++|+
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~   73 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSG--DYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQAR   73 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence            44556665543  56788888999988877  899999999988776      467778888888877 6    788888


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..++++++  +.++.+++.+|.+|..
T Consensus        74 ~~~~~A~~--~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           74 QLAEKAVE--AGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHH--TTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHH--CCCHHHHHHHHHHHHc
Confidence            88888854  5678888888877653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.88  E-value=9.4e-09  Score=66.27  Aligned_cols=86  Identities=15%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CCC
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL---CPT  103 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l---~p~  103 (119)
                      ..+..+..+|..+...|  ++++|+..+.+++.+....  .+..+.++.++|.++..+|++++|+..+++++.+   .++
T Consensus        24 ~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  101 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMD--RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE  101 (203)
T ss_dssp             THHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence            67899999999999999  9999999999999953221  5677889999999999999999999999999998   443


Q ss_pred             C----HHHHHHhhccCc
Q 033440          104 N----VKVVILCSGSHP  116 (119)
Q Consensus       104 ~----~~a~~~~a~~~~  116 (119)
                      +    ..+++.+|.++.
T Consensus       102 ~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A          102 DPLAASANAYEVATVAL  118 (203)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            3    456777776653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.87  E-value=4.7e-08  Score=69.46  Aligned_cols=87  Identities=20%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             hhhHHhHHHHHHhc------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-CCcchHHHHHHHHHHHHHhcC
Q 033440           14 ESEKADLDAIAALK------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-SDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      +++.+.+.++..+.      +..+.++..+|.++...|  ++++|+..|.+++.+.+. .+|..+.++.++|.++..+|+
T Consensus       199 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~  276 (378)
T 3q15_A          199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ  276 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC
Confidence            34555666655542      346778999999999999  999999999999993211 178889999999999999999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 033440           87 YRRAFTDAEEALKLCP  102 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p  102 (119)
                      +++|+..+++++++.+
T Consensus       277 ~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          277 TQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999843

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.87  E-value=2.7e-09  Score=62.85  Aligned_cols=51  Identities=22%  Similarity=0.094  Sum_probs=46.9

Q ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           67 DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        67 ~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+++.+++++|.++..+|+|++|+..++++++++|+++.+|+.+|.++..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   53 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER   53 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999998753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.85  E-value=8.7e-09  Score=72.53  Aligned_cols=100  Identities=11%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             hhHHhHHHHHHhcHH------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcC
Q 033440           15 SEKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~   86 (119)
                      +++..++++..+.++      .+..+..+|..++..|  ++++|+..+.+++.+.+..  .+....++.++|.++..+|+
T Consensus       205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  282 (406)
T 3sf4_A          205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG--EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD  282 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc
Confidence            455556666555433      3448888999999988  9999999999999872221  11126788889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCC------HHHHHHhhccCc
Q 033440           87 YRRAFTDAEEALKLCPTN------VKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~  116 (119)
                      +++|+..+++++.+.+..      ..++..+|.++.
T Consensus       283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  318 (406)
T 3sf4_A          283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT  318 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            999999999988875533      567777776653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.85  E-value=1.7e-08  Score=57.19  Aligned_cols=67  Identities=24%  Similarity=0.346  Sum_probs=61.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      .++++..++++...+|.++..+..+|.+++..|  ++++|+..+++++.+    +|.++.++.++|.++..+|
T Consensus        25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--DYDEAIEYYQKALEL----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcC
Confidence            346778888999999999999999999999999  999999999999999    9999999999999998765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.85  E-value=5e-08  Score=71.82  Aligned_cols=79  Identities=6%  Similarity=0.011  Sum_probs=70.5

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL--  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--  100 (119)
                      +|..+..+.++|..|..+|  +|++|+.+|.++|++    .+..+|+-+..++|+|.+|..+|+|++|+..+++|+++  
T Consensus       336 Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          336 NVYMLHMMYQAMGVCLYMQ--DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            6888999999999999999  999999999999976    33447888899999999999999999999999999985  


Q ss_pred             ---CCCCHHH
Q 033440          101 ---CPTNVKV  107 (119)
Q Consensus       101 ---~p~~~~a  107 (119)
                         .|+++..
T Consensus       414 ~~lG~~Hp~~  423 (433)
T 3qww_A          414 VAHGKDHPYI  423 (433)
T ss_dssp             HHTCTTCHHH
T ss_pred             HHcCCCChHH
Confidence               5777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.85  E-value=1.1e-08  Score=69.74  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+..+..+..+|..++..|  ++++|+..+++++.+.+..  .+....++.++|.++..+|++++|+..+++++.+.|..
T Consensus       179 ~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  256 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  256 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence            4556778899999999988  9999999999999873221  12233488999999999999999999999999886654


Q ss_pred             ------HHHHHHhhccCc
Q 033440          105 ------VKVVILCSGSHP  116 (119)
Q Consensus       105 ------~~a~~~~a~~~~  116 (119)
                            ..+++.+|.++.
T Consensus       257 ~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          257 KDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHH
Confidence                  667777777653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.85  E-value=1.8e-08  Score=74.70  Aligned_cols=94  Identities=17%  Similarity=0.089  Sum_probs=83.0

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHH-------hChhcHH-------HHHHHHHHHHh-hccCCCcchHHHHHHHHHH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVK-------KGKKHYS-------DAIDCYTRAIN-QNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~g~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~a~~   80 (119)
                      .+..+++++..+|.++..|...|..+.+       .|  +++       +|+..|++++. .    .|+++.++.++|..
T Consensus       257 a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g--~~~~a~~~~~~A~~~~~~Al~~~----~p~~~~l~~~~~~~  330 (530)
T 2ooe_A          257 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG--DMNNAKLFSDEAANIYERAISTL----LKKNMLLYFAYADY  330 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHTTTT----CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhcc--chhhhhhhhHHHHHHHHHHHHHh----CcccHHHHHHHHHH
Confidence            4467888888999999999999999986       57  876       89999999997 8    89999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhCCCCH-HHHHHhhccC
Q 033440           81 NLLLGNYRRAFTDAEEALKLCPTNV-KVVILCSGSH  115 (119)
Q Consensus        81 ~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~a~~~  115 (119)
                      +...|++++|...|+++++++|.++ .+|...+.++
T Consensus       331 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  366 (530)
T 2ooe_A          331 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  366 (530)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH
Confidence            9999999999999999999999885 5888776543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.81  E-value=1.5e-08  Score=69.15  Aligned_cols=102  Identities=12%  Similarity=0.140  Sum_probs=79.3

Q ss_pred             ChhhHHhHHHHHHhcHHH----HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--CCcchHHHHHHHHHHHHHhcC
Q 033440           13 TESEKADLDAIAALKESA----AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--SDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      .++++..++++...+|++    +..+..+|..++..|  ++++|+..+.+++.+.+.  ..|..+.++..+|.++..+|+
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   98 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN   98 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence            346777888888888886    467888899999988  999999999999876322  134557788889999999999


Q ss_pred             HHHHHHHHHHHHhhCCCC------HHHHHHhhccCc
Q 033440           87 YRRAFTDAEEALKLCPTN------VKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~------~~a~~~~a~~~~  116 (119)
                      +++|+..+.+++++.|..      ..+++.+|.++.
T Consensus        99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            999999999999997643      337777776654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.81  E-value=2.1e-08  Score=64.63  Aligned_cols=100  Identities=15%  Similarity=0.120  Sum_probs=77.6

Q ss_pred             hhhHHhHHHHHH------hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--c-chHHHHHHHHHHHHHh
Q 033440           14 ESEKADLDAIAA------LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--S-ENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~-~~~~~~~~~a~~~~~l   84 (119)
                      +++...++++..      ..+..+..+..+|..+...|  ++++|+..+.+++.+.....  + ....++.++|.++..+
T Consensus        43 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  120 (203)
T 3gw4_A           43 DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG--NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF  120 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence            355666677666      56778899999999999999  99999999999998743211  2 4567899999999999


Q ss_pred             cCHHHHHHHHHHHHhhCC--CC----HHHHHHhhccC
Q 033440           85 GNYRRAFTDAEEALKLCP--TN----VKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p--~~----~~a~~~~a~~~  115 (119)
                      |++++|+..+++++.+.+  .+    ..++..+|.++
T Consensus       121 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A          121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA  157 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            999999999999997632  22    23456666655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.81  E-value=3.9e-08  Score=67.78  Aligned_cols=86  Identities=12%  Similarity=0.006  Sum_probs=68.7

Q ss_pred             hhhHHhHHHHHH-------hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHh
Q 033440           14 ESEKADLDAIAA-------LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLL   84 (119)
Q Consensus        14 ~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l   84 (119)
                      +++...++++..       ..+..+..+.++|.+++..|  +|++|+..+.+++++.+..  .+..+.+++++|.++..+
T Consensus       172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~--~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS--RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            345555666552       34567779999999999999  9999999999999983321  233478999999999999


Q ss_pred             c-CHHHHHHHHHHHHhhC
Q 033440           85 G-NYRRAFTDAEEALKLC  101 (119)
Q Consensus        85 ~-~~~~A~~~~~~al~l~  101 (119)
                      | .+++|+..+++++.+.
T Consensus       250 g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          250 EYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TCCHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHH
Confidence            9 4799999999999863

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=1.4e-07  Score=64.94  Aligned_cols=85  Identities=16%  Similarity=0.001  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhCCCCH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLGNYRRAFTDAEEAL---KLCPTNV  105 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al---~l~p~~~  105 (119)
                      ...+...|..+...|  ++++|+..|.+++...+...  .....+++++|.+|..+|+|++|+..+++++   +..|++.
T Consensus       115 ~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            344567888888888  99999999999998743321  1236689999999999999999999999999   4566643


Q ss_pred             ----HHHHHhhccCcC
Q 033440          106 ----KVVILCSGSHPN  117 (119)
Q Consensus       106 ----~a~~~~a~~~~~  117 (119)
                          .+++++|.+|..
T Consensus       193 ~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHH
Confidence                688888887753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.76  E-value=1.4e-07  Score=70.35  Aligned_cols=80  Identities=10%  Similarity=0.010  Sum_probs=70.4

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL--  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--  100 (119)
                      +|..+..+.++|..|..+|  +|++|+.++.++|++    .+..+|+-...++|+|.+|..+|+|++|+..+++|+++  
T Consensus       347 Hp~~a~~~~nLa~~y~~~g--~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQ--AYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            6888999999999999999  999999999999976    33447888899999999999999999999999999985  


Q ss_pred             ---CCCCHHHH
Q 033440          101 ---CPTNVKVV  108 (119)
Q Consensus       101 ---~p~~~~a~  108 (119)
                         .|+++..-
T Consensus       425 ~~lG~~Hp~~~  435 (490)
T 3n71_A          425 VTHGPSHPITK  435 (490)
T ss_dssp             HHTCTTSHHHH
T ss_pred             HHhCCCChHHH
Confidence               57776543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.73  E-value=1e-08  Score=71.70  Aligned_cols=76  Identities=16%  Similarity=0.008  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SE-NSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ..++..+|..+...|  ++++|+..|++++.-    .  |. .+.+.+++|.|+..+|+.++|...+++++..+|+ ..+
T Consensus       171 ~~a~~~LG~al~~LG--~~~eAl~~l~~a~~g----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          171 GAAGVAHGVAAANLA--LFTEAERRLTEANDS----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHhcC----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence            457788888888888  888999888888854    2  54 6678888899999999999999999999999988 777


Q ss_pred             HHHhhc
Q 033440          108 VILCSG  113 (119)
Q Consensus       108 ~~~~a~  113 (119)
                      +..+..
T Consensus       244 ~~aL~~  249 (282)
T 4f3v_A          244 AAALKD  249 (282)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            766654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.71  E-value=1.1e-07  Score=70.43  Aligned_cols=85  Identities=9%  Similarity=-0.008  Sum_probs=77.2

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           20 LDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ++.++..+|.+...|..++.. .+.|  ++++|...|+++++.    .|.++.++...+....+.|++++|...+++++.
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~--~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~   74 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQ--PIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM   74 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSS--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            456778899999999999984 7777  999999999999999    999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHhh
Q 033440          100 LCPTNVKVVILCS  112 (119)
Q Consensus       100 l~p~~~~a~~~~a  112 (119)
                      ..| ++..|+..+
T Consensus        75 ~~p-~~~lw~~~~   86 (530)
T 2ooe_A           75 KVL-HIDLWKCYL   86 (530)
T ss_dssp             TCC-CHHHHHHHH
T ss_pred             cCC-ChHHHHHHH
Confidence            999 677776655

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.67  E-value=3.7e-07  Score=63.80  Aligned_cols=95  Identities=13%  Similarity=-0.006  Sum_probs=77.7

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHhcCHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      ++.+.++.+....|.+. ..+.+|..+++.+  +|++|+..++.++..    .+.  ...+++++|.++..+|++++|+.
T Consensus       120 eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~--r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~  192 (282)
T 4f3v_A          120 DAMEALEAAPVAGSEHL-VAWMKAVVYGAAE--RWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAER  192 (282)
T ss_dssp             HHHHHHTSSCCTTCHHH-HHHHHHHHHHHTT--CHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCchH-HHHHHHHHHHHcC--CHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHH
Confidence            34444555555678888 9999999999999  999999999988776    322  24689999999999999999999


Q ss_pred             HHHHHHhhC--CC-CHHHHHHhhccCc
Q 033440           93 DAEEALKLC--PT-NVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~--p~-~~~a~~~~a~~~~  116 (119)
                      .+++++...  |. ...+++.+|.++.
T Consensus       193 ~l~~a~~g~~~P~~~~da~~~~glaL~  219 (282)
T 4f3v_A          193 RLTEANDSPAGEACARAIAWYLAMARR  219 (282)
T ss_dssp             HHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCccccHHHHHHHHHHHH
Confidence            999998654  66 6779999998874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.62  E-value=3e-07  Score=67.52  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL--  100 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--  100 (119)
                      +|..+..+.++|..|..+|  +|++|+.++.++|++    .+..+|.-...++++|.+|..+|++++|+..+++|+++  
T Consensus       325 h~~~~~~~~~L~~~y~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLG--LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            6888999999999999999  999999999999976    34457888899999999999999999999999999885  


Q ss_pred             ---CCCCHHH
Q 033440          101 ---CPTNVKV  107 (119)
Q Consensus       101 ---~p~~~~a  107 (119)
                         .|+++..
T Consensus       403 ~~lG~~Hp~~  412 (429)
T 3qwp_A          403 VTHGREHSLI  412 (429)
T ss_dssp             HHTCTTSHHH
T ss_pred             HhcCCCChHH
Confidence               5777643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.62  E-value=9.6e-07  Score=54.85  Aligned_cols=85  Identities=15%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             hHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCH
Q 033440           16 EKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNY   87 (119)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~   87 (119)
                      ++..+.++...  .++.+...+|..+..    .+  |+++|+..|+++.+.      .++.+.+++|.+|..    .+++
T Consensus        44 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~--d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~  113 (138)
T 1klx_A           44 LFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNE  113 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCH
Confidence            55556655443  456777778877777    56  788888888887776      466777778888877    7788


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440           88 RRAFTDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      ++|+..++++.+..  ++.+.+.++
T Consensus       114 ~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A          114 KQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHHHHHHHCC--CHHHHHHHh
Confidence            88888888887763  466666554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.62  E-value=5e-07  Score=55.90  Aligned_cols=80  Identities=18%  Similarity=0.057  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHH---HHHHHHHHHhhccCCC-c-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSD---AIDCYTRAINQNVLSD-S-ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~---A~~~~~~al~~~~~~~-~-~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      ++....+-++.|+.+.+..  +...   +|..++..+..    + | ..-..++.+|..++++|+|.+|+..++.+|+.+
T Consensus        31 ~~~s~~~~F~yAw~Lv~S~--~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           31 GSVSKSTQFEYAWCLVRTR--YNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             SCCCHHHHHHHHHHHTTSS--SHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            3455788889999998877  6665   88988888876    6 5 677899999999999999999999999999999


Q ss_pred             CCCHHHHHHhh
Q 033440          102 PTNVKVVILCS  112 (119)
Q Consensus       102 p~~~~a~~~~a  112 (119)
                      |+|..|.-.+.
T Consensus       105 P~n~QA~~Lk~  115 (126)
T 1nzn_A          105 PQNNQAKELER  115 (126)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            99998875543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.59  E-value=5.2e-07  Score=66.22  Aligned_cols=92  Identities=14%  Similarity=-0.009  Sum_probs=67.8

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hc
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~   85 (119)
                      ++++..+.++...  .++.++..+|..+..    .+  ++++|+..|+++++.    .  ++.+++++|.+|..    .+
T Consensus       348 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~A~~~----~--~~~a~~~Lg~~y~~g~g~~~  417 (490)
T 2xm6_A          348 KKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKK--DEQQAAIWMRKAAEQ----G--LSAAQVQLGEIYYYGLGVER  417 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT----T--CHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHhC----C--CHHHHHHHHHHHHcCCCCCC
Confidence            3445555555444  456777888888877    66  888888888888776    3  57778888888887    78


Q ss_pred             CHHHHHHHHHHHHhhCC---CCHHHHHHhhccC
Q 033440           86 NYRRAFTDAEEALKLCP---TNVKVVILCSGSH  115 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p---~~~~a~~~~a~~~  115 (119)
                      ++++|+..|+++++.+|   +++.+++.+|.++
T Consensus       418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~  450 (490)
T 2xm6_A          418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLT  450 (490)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence            88888888888888884   3777888777765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.58  E-value=3.5e-07  Score=56.85  Aligned_cols=90  Identities=8%  Similarity=-0.092  Sum_probs=75.0

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRR   89 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~   89 (119)
                      ++++..+.++.......+.    +|..+...+  .+++|+..|+++.+.      .++.+.+++|.+|..    .+++++
T Consensus        12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~--~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A           12 KKAIQYYVKACELNEMFGC----LSLVSNSQI--NKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHTTCTTHH----HHHHTCTTS--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             HHHHHHHHHHHcCCCHhhh----HHHHHHcCC--CHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            4566677777666543333    999998877  899999999999988      578899999999999    899999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+..++++.+.  .++.+++.+|.+|..
T Consensus        80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           80 AAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            99999999987  689999999988753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.57  E-value=5.2e-07  Score=63.51  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=67.4

Q ss_pred             hHHhHHHHHHhcHH------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhc
Q 033440           16 EKADLDAIAALKES------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        16 ~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~   85 (119)
                      +...+.++..+.+.      .+..+..+|..++..|  ++++|+..+++++.+.+..    .|....++.++|.++...|
T Consensus        72 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  149 (373)
T 1hz4_A           72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA  149 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc
Confidence            34445555444332      2344677888888888  8888888888888773221    1445667788888888899


Q ss_pred             CHHHHHHHHHHHHhhCCCC-----HHHHHHhhccC
Q 033440           86 NYRRAFTDAEEALKLCPTN-----VKVVILCSGSH  115 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~-----~~a~~~~a~~~  115 (119)
                      ++++|+..+++++.+.|..     ..++..+|.++
T Consensus       150 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  184 (373)
T 1hz4_A          150 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS  184 (373)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence            9999999999988887642     34566666544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.56  E-value=5.7e-07  Score=64.97  Aligned_cols=84  Identities=17%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      ..+|.++..+..++..++..|  ++++|+..+++|+.+    +| ++..+..+|.++...|++++|+..+.+|+.++|..
T Consensus       271 ~~~~~~a~~~~alal~~l~~g--d~d~A~~~l~rAl~L----n~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKG--KTDESYQAINTGIDL----EM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             ccCCcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhc----CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            446778889999999898888  999999999999999    76 46778889999999999999999999999999988


Q ss_pred             HHHHHHhhccC
Q 033440          105 VKVVILCSGSH  115 (119)
Q Consensus       105 ~~a~~~~a~~~  115 (119)
                      ...++....++
T Consensus       344 ~t~~~~~~l~F  354 (372)
T 3ly7_A          344 NTLYWIENGIF  354 (372)
T ss_dssp             HHHHHHHHSSS
T ss_pred             ChHHHHhCcee
Confidence            75555544444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.56  E-value=3.9e-07  Score=63.88  Aligned_cols=84  Identities=15%  Similarity=0.061  Sum_probs=75.3

Q ss_pred             hhhHHhHHHHHHhcHH--HHHHHHHHHHHHHHh-----ChhcHHHHHHHHHHHHhhccCCCcch-HHHHHHHHHHHHH-h
Q 033440           14 ESEKADLDAIAALKES--AAIELKEKGNEYVKK-----GKKHYSDAIDCYTRAINQNVLSDSEN-SVLYANRAHVNLL-L   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~-----g~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~a~~~~~-l   84 (119)
                      +.....++++.+++|+  +..++..+|..|.+.     |  +.++|..+|++||++    +|+. ...++..|..+.. .
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG--d~ekA~~~ferAL~L----nP~~~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG--GMEKAHTAFEHLTRY----CSAHDPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC--CHHHHHHHHHHHHHH----CCTTCSHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC--CHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHhc
Confidence            3556678999999999  777999999999985     7  999999999999999    9975 9999999999988 5


Q ss_pred             cCHHHHHHHHHHHHhhCCC
Q 033440           85 GNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~  103 (119)
                      |+++++...+++++..+|.
T Consensus       254 gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          254 NNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TCHHHHHHHHHHHHHCCGG
T ss_pred             CCHHHHHHHHHHHHcCCCC
Confidence            9999999999999998876

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.51  E-value=1.2e-06  Score=51.34  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=52.0

Q ss_pred             CCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHH
Q 033440           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY   74 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~   74 (119)
                      ..+++....+++++.++|+++.++..+|+.+++.|  +|++|+..++++++..|. +|+...+-
T Consensus        23 ~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g--~y~~Ai~~w~~~l~~~p~-~~~~~~i~   83 (93)
T 3bee_A           23 AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF--RFQEAIDTWVLLLDSNDP-NLDRVTII   83 (93)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTCCCT-TCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCC-CccHHHHH
Confidence            44778899999999999999999999999999999  999999999999999444 44433333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.48  E-value=4.5e-06  Score=52.58  Aligned_cols=99  Identities=12%  Similarity=-0.011  Sum_probs=76.3

Q ss_pred             CCCCChhhHHhHHHHHHhc---HHHHHHHHHHHHHHHHhCh-hcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHH
Q 033440            9 SEPKTESEKADLDAIAALK---ESAAIELKEKGNEYVKKGK-KHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL   83 (119)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~   83 (119)
                      +++.+++++..++..-...   .....+-++.++++.+... .+-..++.+++..+..    .| ..-..++.+|..+++
T Consensus        14 ~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~----~~~~~RdcLYyLAvg~yk   89 (144)
T 1y8m_A           14 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK   89 (144)
T ss_dssp             GCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----CCSTHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CccchhHHHHHHHHHHHH
Confidence            3555666776666643322   2357778889999987651 2445788899998887    66 567889999999999


Q ss_pred             hcCHHHHHHHHHHHHhhCCCCHHHHHHh
Q 033440           84 LGNYRRAFTDAEEALKLCPTNVKVVILC  111 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~a~~~~  111 (119)
                      +|+|.+|...++.+|+.+|+|..+.-.+
T Consensus        90 l~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           90 LGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            9999999999999999999998876544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.46  E-value=7.7e-06  Score=50.92  Aligned_cols=100  Identities=13%  Similarity=-0.012  Sum_probs=76.4

Q ss_pred             CCCCChhhHHhHHHHH-Hh-cH-HHHHHHHHHHHHHHHhCh-hcHHHHHHHHHHHHhhccCCCc-chHHHHHHHHHHHHH
Q 033440            9 SEPKTESEKADLDAIA-AL-KE-SAAIELKEKGNEYVKKGK-KHYSDAIDCYTRAINQNVLSDS-ENSVLYANRAHVNLL   83 (119)
Q Consensus         9 ~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~g~~~~~~g~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~a~~~~~   83 (119)
                      .++.++++...++..- .. .+ -.+.+-++.++++.+... .+...+|.+++..+..    +| ..-..++.+|..+++
T Consensus        15 ~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----~~~~~Rd~LYyLAvg~yk   90 (134)
T 3o48_A           15 YEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYK   90 (134)
T ss_dssp             GCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHHH
Confidence            4455666666666542 22 22 146778888988887652 2445789999998887    77 467889999999999


Q ss_pred             hcCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440           84 LGNYRRAFTDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      +|+|.+|...++.+|+++|+|..|.-.+.
T Consensus        91 lgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           91 LGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            99999999999999999999998875543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.45  E-value=4.9e-07  Score=66.27  Aligned_cols=90  Identities=11%  Similarity=0.034  Sum_probs=73.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHH---HhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc----
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYV---KKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG----   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~----   85 (119)
                      .++++..++++.   |.++.++..+|..++   ..+  ++++|+..|+++++.      .++.+++++|.+|. .|    
T Consensus       233 ~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~--d~~~A~~~~~~Aa~~------g~~~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          233 EKTAQALLEKIA---PGYPASWVSLAQLLYDFPELG--DVEQMMKYLDNGRAA------DQPRAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             HHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHH-HCSSSC
T ss_pred             HHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHH-cCCCCC
Confidence            345666666654   788899999999843   445  999999999999877      37888999999988 55    


Q ss_pred             -CHHHHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           86 -NYRRAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        86 -~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                       ++++|+..++++.   |.++.+++.+|.+|..
T Consensus       301 ~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence             8999999999988   8899999999987753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.42  E-value=7e-07  Score=66.67  Aligned_cols=86  Identities=14%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----C
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-----C  101 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~  101 (119)
                      +....+.+..+..+|  +|++|+..|.+++++...    .+|.-...+.++|.+|..+|+|++|+..++++|.+     .
T Consensus       309 a~~~le~a~~~~~qg--~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          309 SKDTLEKIDKARSEG--LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            444556666777878  999999999999987332    36777889999999999999999999999999986     3


Q ss_pred             CCC---HHHHHHhhccCcCC
Q 033440          102 PTN---VKVVILCSGSHPNQ  118 (119)
Q Consensus       102 p~~---~~a~~~~a~~~~~~  118 (119)
                      |++   ...+.++|.+|..+
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~  406 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHA  406 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHC
Confidence            555   45778888877543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.42  E-value=3.6e-07  Score=64.36  Aligned_cols=101  Identities=11%  Similarity=0.048  Sum_probs=73.8

Q ss_pred             hhhHHhHHHHHHhcHH-----HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHhcC
Q 033440           14 ESEKADLDAIAALKES-----AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~   86 (119)
                      ++....++++....|.     ....+..+|..++..|  ++++|+..+.+++.+.+....  ....++.++|.++...|+
T Consensus        31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~  108 (373)
T 1hz4_A           31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF  108 (373)
T ss_dssp             HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCC
Confidence            3455566665554332     3446888999999998  999999999999988333111  123457889999999999


Q ss_pred             HHHHHHHHHHHHhhC--------CCCHHHHHHhhccCc
Q 033440           87 YRRAFTDAEEALKLC--------PTNVKVVILCSGSHP  116 (119)
Q Consensus        87 ~~~A~~~~~~al~l~--------p~~~~a~~~~a~~~~  116 (119)
                      +++|+..+++++.+.        |....++..+|.++.
T Consensus       109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A          109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            999999999999875        334556777776653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.39  E-value=3.5e-06  Score=61.78  Aligned_cols=75  Identities=11%  Similarity=-0.070  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCC
Q 033440           31 AIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        31 ~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p  102 (119)
                      +.++..+|..+..    .+  ++++|+..|.++++.      .++.+++++|.+|..    .+++++|+..++++++.  
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--  144 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQ--DYAQAVIWYKKAALK------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--  144 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence            3444444444444    44  444444444444433      233444444444444    44444444444444332  


Q ss_pred             CCHHHHHHhhccC
Q 033440          103 TNVKVVILCSGSH  115 (119)
Q Consensus       103 ~~~~a~~~~a~~~  115 (119)
                      +++.+++.+|.+|
T Consensus       145 ~~~~a~~~Lg~~y  157 (490)
T 2xm6_A          145 GRDSGQQSMGDAY  157 (490)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            2344444444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.33  E-value=1.6e-06  Score=63.85  Aligned_cols=84  Identities=8%  Similarity=-0.035  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CCC
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-----CPT  103 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~p~  103 (119)
                      ...+.+......|  +|++|+..|.+++++...    .+|.-...+.++|.+|..+|+|++|+..++++|.+     .|+
T Consensus       300 ~~le~~~~~~~~g--~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  377 (433)
T 3qww_A          300 NVIEEFRRAKHYK--SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY  377 (433)
T ss_dssp             HHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHhhhcc--CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            3344444445567  999999999999986322    36677788999999999999999999999999986     345


Q ss_pred             C---HHHHHHhhccCcCC
Q 033440          104 N---VKVVILCSGSHPNQ  118 (119)
Q Consensus       104 ~---~~a~~~~a~~~~~~  118 (119)
                      +   ...++++|.+|..|
T Consensus       378 Hp~~a~~l~nLa~~~~~q  395 (433)
T 3qww_A          378 SLNVASMWLKLGRLYMGL  395 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHhc
Confidence            4   45788888887544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.27  E-value=6.5e-06  Score=58.20  Aligned_cols=94  Identities=12%  Similarity=-0.038  Sum_probs=70.6

Q ss_pred             ChhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHh
Q 033440           13 TESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l   84 (119)
                      .+.+.+.++.....+|      +........|++.+..|++++++|...|+++...    .|+  .+..+++   |++.+
T Consensus       152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~  224 (310)
T 3mv2_B          152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQ  224 (310)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHc
Confidence            3456666777777787      3334444456556665555899999999999888    776  4555666   89999


Q ss_pred             cCHHHHHHHHHHHHhh----------CCCCHHHHHHhhc
Q 033440           85 GNYRRAFTDAEEALKL----------CPTNVKVVILCSG  113 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l----------~p~~~~a~~~~a~  113 (119)
                      |+|++|...++.++++          +|+++.++.++..
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~  263 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT  263 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence            9999999999988887          5889999977643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.23  E-value=4.8e-06  Score=61.12  Aligned_cols=84  Identities=12%  Similarity=0.017  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc----CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CCC
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV----LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL-----CPT  103 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~p~  103 (119)
                      ........+..+|  +|++|+..|++++++..    ..+|.-...+.++|.+|..+|+|++|+..+++++.+     .|+
T Consensus       289 ~ll~~ie~~~~~g--~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          289 ESLKKIEELKAHW--KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHhhc--cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            3444455667777  99999999999997632    236667789999999999999999999999999976     345


Q ss_pred             C---HHHHHHhhccCcCC
Q 033440          104 N---VKVVILCSGSHPNQ  118 (119)
Q Consensus       104 ~---~~a~~~~a~~~~~~  118 (119)
                      +   ...++++|.+|..+
T Consensus       367 Hp~~a~~l~nLa~~~~~~  384 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQ  384 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHhc
Confidence            5   45778888877543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.22  E-value=5.3e-06  Score=60.76  Aligned_cols=93  Identities=8%  Similarity=-0.022  Sum_probs=73.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHh----ChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH-H--HHhc
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKK----GKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV-N--LLLG   85 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~-~--~~l~   85 (119)
                      .++++..+.++....+..+..+..+|..+...    +  ++++|+..|+++.       |.++.+++++|.+ +  ...+
T Consensus       195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa-------~g~~~a~~~Lg~~~~~~~~~~  265 (452)
T 3e4b_A          195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP--DEKTAQALLEKIA-------PGYPASWVSLAQLLYDFPELG  265 (452)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHG-------GGSTHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCCC
Confidence            34566667777777777777778888888664    4  8899999998876       3677888999988 4  4678


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           86 NYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++++|+..++++++.+  ++.+++.+|.+|.
T Consensus       266 d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          266 DVEQMMKYLDNGRAAD--QPRAELLLGKLYY  294 (452)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence            9999999999988654  7889999888764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.10  E-value=1.7e-05  Score=57.29  Aligned_cols=98  Identities=12%  Similarity=0.102  Sum_probs=71.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhCh-----hcHHHHHHH-HHH--HHhhccCCCcchHHHHHHHHHHHHHh
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGK-----KHYSDAIDC-YTR--AINQNVLSDSENSVLYANRAHVNLLL   84 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-----~~~~~A~~~-~~~--al~~~~~~~~~~~~~~~~~a~~~~~l   84 (119)
                      ..+++..++++.+++|+.+.++..++.+++....     +....++.. +..  ++..    +|.++.++..++..+...
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~----~~~~a~~~~alal~~l~~  290 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE----LNNLSIIYQIKAVSALVK  290 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG----GTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc----CCcCHHHHHHHHHHHHhC
Confidence            3567788999999999999999988888853220     011112221 111  2234    788999999999999989


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           85 GNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |++++|+..+++++.++|+ ..+|..+|.++
T Consensus       291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~  320 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVY  320 (372)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence            9999999999999999974 67777777654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.04  E-value=1.4e-05  Score=56.52  Aligned_cols=67  Identities=18%  Similarity=0.125  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS--ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      ...+..+|.++...|  ++++|++.+.+.|..    +|  .+..++...+.+++++|+++.|...++++.+.+|+
T Consensus       100 ~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d  168 (310)
T 3mv2_B          100 PYELYLLATAQAILG--DLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED  168 (310)
T ss_dssp             HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred             cHHHHHHHHHHHHcC--CHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            455678999999999  999999999999998    76  89999999999999999999999999999999993

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.02  E-value=6e-05  Score=48.60  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc---CC------------------CcchHHHHHHHHHHHHHhcCHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV---LS------------------DSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~---~~------------------~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      ...+.-.|+.+|..+  +|..|...|+++|.+..   +.                  .+.+..+.+..+.||.+++++.+
T Consensus        63 ~~~l~~ladalf~~~--eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           63 YQLLVYHADSLFHDK--EYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            457888999999998  99999999999987622   11                  12234788999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      |+.....+ -..-..++.-..+|+.|-
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence            99975543 223356788888877663

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.93  E-value=5.7e-05  Score=52.99  Aligned_cols=91  Identities=14%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             HHHhcHHHHHHHHHHHHHHHH---h--Ch----hcHHHHHHHHHHHHhhccCCCcc--hHHHHHHHHHHHHHh-----cC
Q 033440           23 IAALKESAAIELKEKGNEYVK---K--GK----KHYSDAIDCYTRAINQNVLSDSE--NSVLYANRAHVNLLL-----GN   86 (119)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~~---~--g~----~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~a~~~~~l-----~~   86 (119)
                      +...+|++++.++=.|.....   .  |.    +....|...++++|++    +|.  +..+|..+|..|..+     |+
T Consensus       144 l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd  219 (301)
T 3u64_A          144 LSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGG  219 (301)
T ss_dssp             HTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred             HHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence            445567777776655555432   1  20    2356788889999999    998  778999999999996     99


Q ss_pred             HHHHHHHHHHHHhhCCCC-HHHHHHhhccCcC
Q 033440           87 YRRAFTDAEEALKLCPTN-VKVVILCSGSHPN  117 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~-~~a~~~~a~~~~~  117 (119)
                      .++|..+++++++++|+. ...++..|..+..
T Consensus       220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            999999999999999975 8888888876654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=3.9e-05  Score=54.65  Aligned_cols=86  Identities=8%  Similarity=-0.036  Sum_probs=67.7

Q ss_pred             hhhHHhHHHHHHhcH------HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHhc
Q 033440           14 ESEKADLDAIAALKE------SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~l~   85 (119)
                      +..+..+.......+      ..+..+..+|..++..|  +|.+|+..+.+++......  .+....++.+.|.++..+|
T Consensus       112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (434)
T 4b4t_Q          112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK--QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR  189 (434)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence            344444544444322      24677889999999999  9999999999998764432  4667789999999999999


Q ss_pred             CHHHHHHHHHHHHhhC
Q 033440           86 NYRRAFTDAEEALKLC  101 (119)
Q Consensus        86 ~~~~A~~~~~~al~l~  101 (119)
                      +|.+|...+++++.+.
T Consensus       190 ~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          190 NLAKSKASLTAARTAA  205 (434)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHh
Confidence            9999999999998864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.82  E-value=3.9e-05  Score=56.73  Aligned_cols=80  Identities=15%  Similarity=0.118  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC------------------------CCcchHHHHHHHHHHHHHhcCH
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL------------------------SDSENSVLYANRAHVNLLLGNY   87 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~------------------------~~~~~~~~~~~~a~~~~~l~~~   87 (119)
                      ..|..+|.++++.|  +|++|++.|.++-...++                        .+|+.   ...+..+|.+.|++
T Consensus       149 ~n~~~LA~~L~~Lg--~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~  223 (449)
T 1b89_A          149 SNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYF  223 (449)
T ss_dssp             TCHHHHHHHHHTTT--CHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHhc--cHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCH
Confidence            45556666666666  667766666666322000                        02333   33466789999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           88 RRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        88 ~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++|+..+++++.+++.+..++..+|.+|.
T Consensus       224 eEai~lLe~aL~le~ah~~~ftel~il~~  252 (449)
T 1b89_A          224 EELITMLEAALGLERAHMGMFTELAILYS  252 (449)
T ss_dssp             HHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999998887653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.71  E-value=0.0002  Score=42.06  Aligned_cols=60  Identities=10%  Similarity=0.010  Sum_probs=49.3

Q ss_pred             hhHHhHHHHHHhc-------HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440           15 SEKADLDAIAALK-------ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        15 ~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      .++..+..+....       +..+..+..+|.++++.|  +++.|+..+++++.+    .|++..+..|++..
T Consensus        23 ~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g--~~~~A~~~~~~al~l----~P~~~~~~~n~~~~   89 (104)
T 2v5f_A           23 HTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG--DLDKALLLTKKLLEL----DPEHQRANGNLKYF   89 (104)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHhhHHHH
Confidence            4556666665542       346788999999999999  999999999999999    99999998888733

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.70  E-value=0.00011  Score=60.90  Aligned_cols=65  Identities=17%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      .+.+..|.++|..+...|  ++++|+..|.+         .+++..|.++|.++.++|+|++|+..+..+.+.+++
T Consensus      1102 vn~p~vWsqLAKAql~~G--~~kEAIdsYiK---------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKG--MVKEAIDSYIK---------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            456889999999999999  99999999944         478888999999999999999999999999988754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.66  E-value=9.7e-05  Score=52.59  Aligned_cols=71  Identities=10%  Similarity=0.133  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC-------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD-------------SENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      +..+.|..+.+.|  +|++|++.|.+++...+...             +....++.++|.+|...|+|++|+..+.+++.
T Consensus         6 ~~l~~a~~l~~~~--~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            6 SKLEEARRLVNEK--QYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHHHHHHT--CHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4456788888888  99999999999999843311             11224688999999999999999999999988


Q ss_pred             hCCCCH
Q 033440          100 LCPTNV  105 (119)
Q Consensus       100 l~p~~~  105 (119)
                      ..+...
T Consensus        84 ~~~~~~   89 (434)
T 4b4t_Q           84 YMMQFA   89 (434)
T ss_dssp             HHHTSC
T ss_pred             HHHHcc
Confidence            766543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.64  E-value=0.00075  Score=42.91  Aligned_cols=61  Identities=7%  Similarity=-0.007  Sum_probs=52.4

Q ss_pred             hhhHHhHHHHHHhc-H-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440           14 ESEKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        14 ~~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      .+.+..++.+...+ | ...+.++.+|..+++.|  +|++|..+++++|++    +|++..+..-+-.+
T Consensus        52 ~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~--~Y~~A~~y~~~lL~i----eP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           52 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence            36778888888888 8 67999999999999999  999999999999999    99988776655444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.62  E-value=0.00018  Score=59.78  Aligned_cols=83  Identities=14%  Similarity=0.056  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---------------------CcchHHHHHHHHHHHHHhcCHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---------------------DSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      +..|..+|.++.+.|  ++++|++.+.+|....+|.                     -..++..+..++..|...|.|++
T Consensus      1221 A~ny~rLA~tLvkLg--e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A         1221 VSNFGRLASTLVHLG--EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred             hhHHHHHHHHHHHhC--CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHH
Confidence            345556666666666  6677776666665541110                     00134456677888999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           90 AFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        90 A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      |+..++.+|.++|.+...+..+|.++
T Consensus      1299 AI~LlE~aL~LeraH~gmftELaiLy 1324 (1630)
T 1xi4_A         1299 LITMLEAALGLERAHMGMFTELAILY 1324 (1630)
T ss_pred             HHHHHHHHhccChhHhHHHHHHHHHH
Confidence            99999999999999988887777655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.00082  Score=52.64  Aligned_cols=61  Identities=15%  Similarity=0.165  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ....+..++..+..+|  +|+-|+.+..+|+..    .|.+...|+.++.||..+|+|+.|+-.++-
T Consensus       336 ~~~LL~~Qa~FLl~K~--~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRG--DYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhccC--cHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            4456777888888877  999999999999999    999999999999999999999999975444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.32  E-value=9.9e-05  Score=54.57  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      ..+|...|..++..|  .|++|..+|.++            ..+..+|.|+.++|+|++|+..++++     .++.+|..
T Consensus       122 ~~a~~~IGd~~~~~g--~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~  182 (449)
T 1b89_A          122 NAHIQQVGDRCYDEK--MYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE  182 (449)
T ss_dssp             -----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHH
Confidence            458999999999999  999999999864            24788999999999999999999999     35655554


Q ss_pred             h
Q 033440          111 C  111 (119)
Q Consensus       111 ~  111 (119)
                      .
T Consensus       183 v  183 (449)
T 1b89_A          183 V  183 (449)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.28  E-value=0.0022  Score=49.72  Aligned_cols=92  Identities=4%  Similarity=-0.022  Sum_probs=79.1

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC---HHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN---YRR   89 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~---~~~   89 (119)
                      +++.+..++..+..+|.+...|........+.+  +++.+...|++++..    .|....++......-.+.++   ++.
T Consensus        48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~--~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~  121 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLK--QWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAV  121 (679)
T ss_dssp             CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHH
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHH
Confidence            445566788888999999999999999999888  999999999999999    99999999998888888899   999


Q ss_pred             HHHHHHHHHhhCC--CCHHHHHH
Q 033440           90 AFTDAEEALKLCP--TNVKVVIL  110 (119)
Q Consensus        90 A~~~~~~al~l~p--~~~~a~~~  110 (119)
                      +...|++++...|  .++..|..
T Consensus       122 v~~lfeRal~~~~~~~sv~LW~~  144 (679)
T 4e6h_A          122 IEPVLARCLSKELGNNDLSLWLS  144 (679)
T ss_dssp             HHHHHHHHTCSSSCCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHH
Confidence            9999999999884  56666643

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.08  E-value=0.0027  Score=40.86  Aligned_cols=64  Identities=16%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS---------VLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ...+.+....++..|  .|+.|+.....++.+    ..+++         .+++..|..++..++|..|...|+++|.+
T Consensus        20 ~~~l~dqik~L~d~~--LY~sA~~La~lLlSl----~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAG--LHSNVRLLSSLLLTL----SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             -CCHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            456778888899988  999999999998887    33333         47888999999999999999999998775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.96  E-value=0.0033  Score=48.73  Aligned_cols=77  Identities=13%  Similarity=-0.134  Sum_probs=70.3

Q ss_pred             HhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHH-HHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           18 ADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAI-DCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ..+++++...|..+..|...+......|  +.++|. ..|.+|+..    .|.+..++...+......|++++|...+++
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~--~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKN--TDSTVITKYLKLGQQC----IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHS--CCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4577778889999999999999999988  888997 999999999    898999999999999999999999999999


Q ss_pred             HHhh
Q 033440           97 ALKL  100 (119)
Q Consensus        97 al~l  100 (119)
                      ++..
T Consensus       404 ~l~~  407 (679)
T 4e6h_A          404 CIDR  407 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.66  E-value=0.016  Score=43.41  Aligned_cols=78  Identities=13%  Similarity=-0.030  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      ...+..+|...--..  .+..|..+|.+|+.+    .|.+...|..+|.+....|+.-+|+-+|.+++-....++.+.-+
T Consensus       152 hr~l~~LGDL~RY~~--~~~~A~~~Y~~A~~~----~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~n  225 (497)
T 1ya0_A          152 QHCLVHLGDIARYRN--QTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             HHHHHHcccHHHHHH--HHHHHHHHHHHHHHh----CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHH
Confidence            346778899988877  899999999999999    99999999999999999999999999999999987778877766


Q ss_pred             hhcc
Q 033440          111 CSGS  114 (119)
Q Consensus       111 ~a~~  114 (119)
                      +...
T Consensus       226 L~~~  229 (497)
T 1ya0_A          226 LQKA  229 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.41  E-value=0.035  Score=34.08  Aligned_cols=60  Identities=7%  Similarity=-0.010  Sum_probs=48.8

Q ss_pred             hhHHhHHHHHHhc-H-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440           15 SEKADLDAIAALK-E-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        15 ~~~~~~~~~~~~~-~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      ..+..++.+...+ | ..-+.++.+|..+++.|  +|+.|..+.+..|+.    .|++..+..-...+
T Consensus        56 ~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg--~Y~~A~~~~~~lL~~----eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           56 KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK--EYEKALKYVRGLLQT----EPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence            4566777776666 6 57788999999999999  999999999999999    99988776544443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.28  E-value=0.068  Score=38.48  Aligned_cols=67  Identities=12%  Similarity=0.053  Sum_probs=58.3

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      ......+...++..+...|  ++.+++..+.+++..    +|.+-.++..+-.++...|+..+|+..|++..+
T Consensus       167 ~~~~~~a~~~~~~~~l~~g--~~~~a~~~l~~~~~~----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          167 VEDKVLAHTAKAEAEIACG--RASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445566777888889988  999999999999999    999999999999999999999999999888643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.18  E-value=0.026  Score=39.05  Aligned_cols=62  Identities=18%  Similarity=0.322  Sum_probs=55.7

Q ss_pred             HHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           39 NEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        39 ~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      ..+++.|  +.++|+......|..    .|.++.....+...+...|+|+.|...++-+.+++|....
T Consensus         5 ~~ll~~g--~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEG--QLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTT--CHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCC--CHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            3456777  999999999999999    9999999999999999999999999999999999998754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.99  E-value=0.089  Score=32.58  Aligned_cols=60  Identities=20%  Similarity=0.027  Sum_probs=49.6

Q ss_pred             hhHHhHHHHHHhcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440           15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      ..+..++.+....| ..-+.++.+|..+++.|  +|+.|..+.+..++.    .|+|..+..-...+
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg--dY~~Ar~y~d~lL~~----eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhh----CCCCHHHHHHHHHH
Confidence            56677777777777 46788999999999999  999999999999999    99988776555444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.55  E-value=0.21  Score=35.91  Aligned_cols=80  Identities=11%  Similarity=0.015  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhccC-----C--Ccc-----------hHHHHHHHHHHHHHhcCHHHHHHHHH
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL-----S--DSE-----------NSVLYANRAHVNLLLGNYRRAFTDAE   95 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~-----~--~~~-----------~~~~~~~~a~~~~~l~~~~~A~~~~~   95 (119)
                      +...|......|  +++.|+..+.+|+.+-..     .  .++           ...+...++.++...|++.+++..+.
T Consensus       118 l~~~~~~~~~~~--~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          118 EKTAGVHAAAAG--RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            344455555667  899999999999987321     1  011           11344556778889999999999999


Q ss_pred             HHHhhCCCCHHHHHHhhccC
Q 033440           96 EALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        96 ~al~l~p~~~~a~~~~a~~~  115 (119)
                      +++..+|-+..+|..+-.++
T Consensus       196 ~~~~~~P~~E~~~~~lm~al  215 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAY  215 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHH
Confidence            99999999988887765554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.19  E-value=0.099  Score=38.75  Aligned_cols=60  Identities=8%  Similarity=-0.021  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhc
Q 033440           49 YSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~  113 (119)
                      .+.....|+++|..    .|..+.++...+..+...|+.++|...+.+++.. |.+...++..+.
T Consensus       195 ~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~  254 (493)
T 2uy1_A          195 ESRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence            34567789999999    8888999999999999999999999999999999 998776665443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.10  E-value=0.25  Score=38.90  Aligned_cols=44  Identities=16%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           73 LYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        73 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      ++.-=+.-+...|+|+-|+..+++++..-|.....|+.++.+|.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi  382 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHI  382 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence            33333555667899999999999999999999999999999884

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.01  E-value=0.21  Score=31.30  Aligned_cols=60  Identities=20%  Similarity=0.027  Sum_probs=47.7

Q ss_pred             hhHHhHHHHHHhcH-HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHH
Q 033440           15 SEKADLDAIAALKE-SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHV   80 (119)
Q Consensus        15 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~   80 (119)
                      +.+..++.+....| ..-+.++.++..+++.|  +|+.|.++.+..|+.    .|+|..+..-...+
T Consensus        60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~--~Y~~Ar~y~d~lL~~----eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHT----CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccchhHHHHHHHHHHHHhh--hHHHHHHHHHHHHhc----CCCcHHHHHHHHHH
Confidence            45566777766666 46778999999999999  999999999999999    99888765544333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.69  E-value=0.11  Score=32.99  Aligned_cols=52  Identities=17%  Similarity=0.129  Sum_probs=25.8

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                      |.+.|-..|+.++.+    +..-+.++...|.--.+.|+...|...+.+++.+.|.
T Consensus        75 D~d~aR~vy~~a~~~----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           75 EPDDARDYFQMARAN----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             CGGGCHHHHHHHHHH----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             CHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            444444444444444    3333444444444444555555555555555555553

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.52  E-value=0.57  Score=32.40  Aligned_cols=90  Identities=10%  Similarity=-0.024  Sum_probs=68.1

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--------------------------
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--------------------------   65 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--------------------------   65 (119)
                      ..+..+..+...++.+|.++..-..+...++-.|  +|+.|+..++....+.|.                          
T Consensus        12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G--~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~   89 (273)
T 1zbp_A           12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDG--DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA   89 (273)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3456777888888899999999999999999989  999999998888887321                          


Q ss_pred             -----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 033440           66 -----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPT  103 (119)
Q Consensus        66 -----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~  103 (119)
                           ..|..+....-.+......|+.++|.....++++..|.
T Consensus        90 ~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           90 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence                 12233333444455566678999999998889888764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.42  E-value=0.11  Score=37.92  Aligned_cols=67  Identities=10%  Similarity=0.127  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+++..+|..+++.|  |++.|++.|.++...+.. ......++...-.+++..++|..+...+.++..+
T Consensus       131 ~~~~~~la~~~~~~G--d~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          131 AQAWINLGEYYAQIG--DKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             SSCCHHHHHHHHHHC--CCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            346789999999999  999999999999987555 3456678888888889999999999999998654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.08  E-value=0.84  Score=33.14  Aligned_cols=63  Identities=13%  Similarity=0.023  Sum_probs=51.9

Q ss_pred             HHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           36 EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--SENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        36 ~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      .+|..++..|  +|.+|+..+.+.+..+.+.+  .....++.....+|..++++.++...+.++...
T Consensus       104 kL~~l~~~~~--~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A          104 RLIALYFDTA--LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh--hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            7899999998  99999999999998755533  234466777788899999999999999988664

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.55  E-value=1.3  Score=28.20  Aligned_cols=64  Identities=13%  Similarity=0.034  Sum_probs=36.4

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      ...+.+..+..+..+.+..|...+..-.++|  +...|...+.+||.+    .|..... ...|..-++.|
T Consensus        78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg--nl~kARkILg~AiG~----~~k~~~~-le~a~~nl~~~  141 (161)
T 4h7y_A           78 DARDYFQMARANCKKFAFVHISFAQFELSQG--NVKKSKQLLQKAVER----GAVPLEM-LEIALRNLNLQ  141 (161)
T ss_dssp             GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT----TCBCHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHhcc----CCCcHHH-HHHHHHhhhcC
Confidence            3344455554555556666666666666666  777777777777776    5544433 33444444444

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=91.32  E-value=0.52  Score=26.57  Aligned_cols=31  Identities=26%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+..+|...-+.|  +|++|+.+|..+|+.
T Consensus        18 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           18 MARKYAINAVKADKEG--NAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            4566777788888888  999999999999876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.08  E-value=1.8  Score=32.15  Aligned_cols=66  Identities=11%  Similarity=-0.020  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +...|..+...+.+.|  ++++|+..+.+....  ...| +...|..+-.++.+.|++++|...+++..+.
T Consensus       104 d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~--g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          104 NEATFTNGARLAVAKD--DPEMAFDMVKQMKAF--GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             CHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc--CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4567778888888888  888888888876653  1133 4455666667777888888888888887663

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.91  E-value=3.1  Score=30.72  Aligned_cols=73  Identities=8%  Similarity=-0.004  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG-NYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ...|..-+....+.+  +.+.|...|.+| ..    .+....++...|..-...+ +++.|...++++++.-|+.+..+.
T Consensus       286 ~~lw~~y~~~~~r~~--~~~~AR~i~~~A-~~----~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~  358 (493)
T 2uy1_A          286 DLLRINHLNYVLKKR--GLELFRKLFIEL-GN----EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE  358 (493)
T ss_dssp             HHHHHHHHHHHHHHH--CHHHHHHHHHHH-TT----SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHh-hC----CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence            455666676666766  899999999999 43    2334566666676666666 599999999999998888876554


Q ss_pred             H
Q 033440          110 L  110 (119)
Q Consensus       110 ~  110 (119)
                      .
T Consensus       359 ~  359 (493)
T 2uy1_A          359 E  359 (493)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.75  E-value=0.63  Score=26.16  Aligned_cols=31  Identities=29%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+..+|...=+.|  +|++|+.+|..+|+.
T Consensus        10 ~Ai~lv~~Ave~D~~g--~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           10 MARKYAILAVKADKEG--KVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence            4666777888888888  999999999999876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.69  E-value=2.1  Score=31.79  Aligned_cols=66  Identities=11%  Similarity=0.054  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +...|..+-..+.+.|  ++++|.+.+.+..+.  ...| +...|..+-.++.+.|++++|...+++.-+.
T Consensus       139 d~~tyn~lI~~~~~~g--~~~~A~~l~~~M~~~--G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          139 RLRSYGPALFGFCRKG--DADKAYEVDAHMVES--EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccceehHHHHHHHHCC--CHHHHHHHHHHHHhc--CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            4667888888999988  999999999998764  2245 4456777888999999999999999998663

>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*

Probab=90.61  E-value=1.5  Score=25.23  Aligned_cols=52  Identities=17%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHH-HHHHHHHHH
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNLL   83 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~~   83 (119)
                      ...++.+...|..+++.+  +|.+|+..++++.....  +|+...++ +.++.|--+
T Consensus        50 e~~~r~~i~eak~~y~~~--ny~ea~~l~~k~~n~te--n~~i~ki~~fyl~ec~kk  102 (106)
T 2vkj_A           50 EKKARSLIAEGKDLFETA--NYGEALVFFEKALNLSD--NEEIKKIASFYLEECRKK  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhc--chhHHHHHHHHHHcccc--CHHHHHHHHHHHHHHHHH
Confidence            467889999999999999  99999999999986610  23434444 666777544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=89.91  E-value=2.9  Score=27.43  Aligned_cols=74  Identities=12%  Similarity=0.060  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh----ccC---------CCcchHHHHH-HHHHHHHHhcCHHHHHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ----NVL---------SDSENSVLYA-NRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~----~~~---------~~~~~~~~~~-~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      +.+.+-...++.+..  ||..|+...+..|+-    .|+         ++|.+...++ -.|..+...|+-+|||.++..
T Consensus        62 ~Ts~YYk~LCy~klK--dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~  139 (242)
T 3kae_A           62 CTSKYYESLCYKKKK--DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR  139 (242)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence            455566777888866  999999999999842    121         3555665554 468888899999999999999


Q ss_pred             HHhhCCCCHH
Q 033440           97 ALKLCPTNVK  106 (119)
Q Consensus        97 al~l~p~~~~  106 (119)
                      .....|-.+.
T Consensus       140 Sf~~~~lf~~  149 (242)
T 3kae_A          140 SFGKSFLFSP  149 (242)
T ss_dssp             HHHHCCCHHH
T ss_pred             hcCCccccch
Confidence            9999886543

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=89.70  E-value=0.83  Score=26.38  Aligned_cols=29  Identities=24%  Similarity=0.208  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           70 NSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+..+-.++..+.+.|+|++||+..+++.
T Consensus        14 ~AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           14 LAHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            34556667777888888888877666654

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=89.65  E-value=0.96  Score=25.62  Aligned_cols=31  Identities=26%  Similarity=0.485  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...-..|  +|++|+.+|..+|+.
T Consensus        15 ~A~~lv~~Ave~D~~g--~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           15 AAATVLKRAVELDSES--RYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            3455666677777777  999999999999976

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.33  E-value=3.7  Score=26.91  Aligned_cols=56  Identities=13%  Similarity=0.013  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           32 IELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        32 ~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      +--.-.+..++-.|  .|..++-.+   ..      -+..+..+..+.||.++++|..|+......+
T Consensus        34 eY~lL~~I~Lyyng--EY~R~Lf~L---~~------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il   89 (242)
T 3kae_A           34 EYRMLMSIVLYLNG--EYTRALFHL---HK------LNTCTSKYYESLCYKKKKDYKKAIKSLESIL   89 (242)
T ss_dssp             CTHHHHHHHHHHTT--CHHHHHHHH---HT------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhcc--hHhHHHHHH---Hh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345677788888  888777654   22      3556666778999999999999999999999

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=88.10  E-value=1.2  Score=25.47  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|...-..|  +|++|+.+|..+++.
T Consensus        14 ~Ai~lv~~Ave~D~~g--~y~eAl~~Y~~Aie~   44 (93)
T 1wfd_A           14 AAVAVLKRAVELDAES--RYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence            3455666777777777  999999999988876

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=87.99  E-value=1.3  Score=24.77  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|...-..|  +|++|+.+|..+++.
T Consensus        13 A~~l~~~Av~~D~~g--~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           13 GIELVQKAIDLDTAT--QYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            445555666666767  999999999998875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.48  E-value=3  Score=26.86  Aligned_cols=62  Identities=13%  Similarity=0.021  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcc--------hHHH-------------HHHHHHHHHHhcCHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSE--------NSVL-------------YANRAHVNLLLGNYR   88 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~--------~~~~-------------~~~~a~~~~~l~~~~   88 (119)
                      +...|..+|......|  +++-|.++|.++=..    +.-        +..-             +.-...+++.+|+++
T Consensus        33 ~~~~Wk~Lg~~AL~~g--n~~lAe~cy~~~~D~----~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~  106 (177)
T 3mkq_B           33 DSITWERLIQEALAQG--NASLAEMIYQTQHSF----DKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTK  106 (177)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHTTCH----HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHHcC--ChHHHHHHHHHhCCH----HHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHH
Confidence            4668999999999999  999999999875433    110        1111             122245677788888


Q ss_pred             HHHHHHHHH
Q 033440           89 RAFTDAEEA   97 (119)
Q Consensus        89 ~A~~~~~~a   97 (119)
                      +++..+.+.
T Consensus       107 ~~i~lL~~~  115 (177)
T 3mkq_B          107 ERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHC
Confidence            888877553

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.22  E-value=2  Score=32.14  Aligned_cols=62  Identities=16%  Similarity=0.023  Sum_probs=47.9

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      .+...+.++..++|+....+.++|..+...|  +.-.|+-+|.+++..    ....+.+..|+...+-
T Consensus       170 ~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~--~~l~a~y~y~rsl~~----~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          170 QAESYYRHAAQLVPSNGQPYNQLAILASSKG--DHLTTIFYYCRSIAV----KFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT--CHHHHHHHHHHHHSS----SBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHhccc--ccHHHHHHHHHHHhc----CCCChhHHHHHHHHHH
Confidence            4455678888999999999999999999988  999999999999975    3334444455444443

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=86.98  E-value=1.5  Score=26.36  Aligned_cols=30  Identities=33%  Similarity=0.570  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+..+|...-..|  +|++|+.+|..++++
T Consensus        18 Ai~lv~~Ave~D~ag--~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           18 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHH
Confidence            445566666666767  999999999998875

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.84  E-value=1.9  Score=32.49  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           28 ESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+.+..+.-+-..|...+  .|++|.....++.  .|..   ++.....++..|.++...++|.+|..++..|++..|.+
T Consensus       228 ~~qa~l~nllLRnYL~~~--~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNG--EVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSS--CSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             chhHHHHHHHHHHHHccC--cHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            456777777788888887  9999999998874  2211   22335678889999999999999999999999988754

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=86.63  E-value=2.1  Score=33.06  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcC
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGN   86 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~   86 (119)
                      +......|..++..|  +|.-|.+..+.++..    +|++..+..-++.+|..+|.
T Consensus       449 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~~----~p~~~~a~~l~a~~~~~l~~  498 (658)
T 2cfu_A          449 AERLLEQARASYARG--EYRWVVEVVNRLVFA----EPDNRAARELQADALEQLGY  498 (658)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHH
Confidence            455677889999988  999999999999999    99999999999999988873

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=85.64  E-value=2.2  Score=23.43  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHH
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSV   72 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~   72 (119)
                      ..+|-.+...|  ++++|+..+..||..    +|....
T Consensus        21 V~~GE~L~~~g--~~~~~~~hf~nAl~V----c~qP~~   52 (73)
T 3ax2_A           21 IQLGEELLAQG--DYEKGVDHLTNAIAV----CGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHHT----CSSCHH
T ss_pred             HHHHHHHHHCC--CHHHHHHHHHHHHHH----cCCHHH
Confidence            46788899988  999999999999998    655443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=85.01  E-value=6.2  Score=32.56  Aligned_cols=70  Identities=7%  Similarity=-0.169  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      ..-..+..+-+.+++.|  +.++|...+....+.......-+...|..+-..|.+.|++++|+..+++..+.
T Consensus       125 ~~~~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~  194 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA  194 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            34445888888999988  99999999866433200001235667788888888999999999999998763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.77  E-value=6.3  Score=29.99  Aligned_cols=27  Identities=19%  Similarity=0.416  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRA   59 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~a   59 (119)
                      ...|..+|..+.+.+  +++.|..+|.++
T Consensus       681 ~~~W~~la~~al~~~--~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRF--NFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcC--CHHHHHHHHHHc
Confidence            567899999999998  999999999885

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=82.75  E-value=6.3  Score=25.70  Aligned_cols=34  Identities=9%  Similarity=0.015  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV   64 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~   64 (119)
                      ..++-.+-+|..++.++  +|.+|.+.+.+|+..+|
T Consensus        12 q~v~Y~YYlGr~~~~~~--~y~~A~~~L~~A~~~~~   45 (203)
T 3t5x_A           12 QRVTYKYYVGRKAMFDS--DFKQAEEYLSFAFEHCH   45 (203)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHCC
Confidence            35667888999999988  99999999999999943

>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}

Probab=82.57  E-value=6.6  Score=28.66  Aligned_cols=52  Identities=21%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           49 YSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      |+..+..++.|+...|..    .++...++.-+|.+|+-+|+|++|+..+++++..
T Consensus       164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~  219 (454)
T 3myv_A          164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD  219 (454)
T ss_dssp             HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence            455566677777765532    2345567888899999999999999999999864

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=81.66  E-value=2.6  Score=27.58  Aligned_cols=39  Identities=8%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           69 ENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        69 ~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      .-....+.+|..++..++|.+|..++..|++..|.....
T Consensus        12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~   50 (203)
T 3t5x_A           12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK   50 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence            456788899999999999999999999999998866443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=81.65  E-value=7.7  Score=24.46  Aligned_cols=50  Identities=16%  Similarity=0.042  Sum_probs=36.8

Q ss_pred             cHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           48 HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        48 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      .-++--+.+...+.-    .+-++..+..+|.+|-++|+-.+|-+...+|.+-.
T Consensus       106 KkDqLdki~~~~l~n----~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A          106 KRDKLEEIGREILKN----NEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             CHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cHhHHHHHHHHHhcc----CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            444444444443333    56679999999999999999999999999988753

>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}

Probab=81.65  E-value=7.1  Score=28.88  Aligned_cols=53  Identities=17%  Similarity=0.187  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHhhccCC-------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           49 YSDAIDCYTRAINQNVLS-------DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      |+..+..++.|+...|..       .++...++.-+|.+|+-+++|++|+..+++++...
T Consensus       174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~  233 (495)
T 3lew_A          174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD  233 (495)
T ss_dssp             HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            344455566666655431       13455678888999999999999999999999753

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=81.04  E-value=8.3  Score=24.43  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchH--HHH-HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENS--VLY-ANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~--~~~-~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      -...|..+|+.|  +|=+|=+.++.+....+..  ...-.  .+. ...|..+...||+.-|...+.+++.
T Consensus        35 ~~~~~i~lFn~g--~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~  103 (161)
T 2ijq_A           35 AVVHGVRLYNSG--EFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ  103 (161)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            466788899988  9999999998888762221  00112  233 4455566778999999999999987

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=80.95  E-value=4.5  Score=23.31  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+..++..+.+.|  .|++||++..++...
T Consensus        14 ~AH~~~RrAe~ll~~g--kydeAIech~kAa~y   44 (97)
T 2crb_A           14 LAHQQSRRADRLLAAG--KYEEAISCHRKATTY   44 (97)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence            3666777888899988  999999887777744

>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}

Probab=80.86  E-value=8.1  Score=28.24  Aligned_cols=52  Identities=23%  Similarity=0.211  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           49 YSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      |+..+..++.|+...|..    -++...++.-+|.+|+-+|+|++|+..+++++..
T Consensus       170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~  225 (461)
T 3kez_A          170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG  225 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            345556677777665532    2455667888899999999999999999999863

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=80.82  E-value=7.5  Score=26.61  Aligned_cols=50  Identities=18%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHh
Q 033440           50 SDAIDCYTRAINQN----VLSDSENSVLYANRAHVNLL-LGNYRRAFTDAEEALK   99 (119)
Q Consensus        50 ~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~   99 (119)
                      +.|...|+.|.++.    |..+|-...+..|.+..|+. ++++++|+..++++++
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  206 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  206 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            46777888888652    22355555666777776665 7999999998888775

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=80.59  E-value=4.2  Score=22.73  Aligned_cols=14  Identities=14%  Similarity=-0.043  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHhh
Q 033440           49 YSDAIDCYTRAINQ   62 (119)
Q Consensus        49 ~~~A~~~~~~al~~   62 (119)
                      .+.|+....+|++.
T Consensus        16 ~~~Ai~lv~~Ave~   29 (83)
T 2w2u_A           16 EEMARKYAINAVKA   29 (83)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34555555555554

>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}

Probab=80.58  E-value=8.6  Score=28.17  Aligned_cols=53  Identities=19%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHhhccCC----CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 033440           49 YSDAIDCYTRAINQNVLS----DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLC  101 (119)
Q Consensus        49 ~~~A~~~~~~al~~~~~~----~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~  101 (119)
                      |+..+..++.|+...|..    -+....++.-+|.+|+-+|+|++|+..+++++...
T Consensus       176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~  232 (477)
T 3mcx_A          176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN  232 (477)
T ss_dssp             HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence            455566677777765532    23455678888999999999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	5e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 3e-06
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 34  LKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD 93
             E  +   + G   +  A     +   Q    + +N+ +    + ++       R+   
Sbjct: 2   PMELAHREYQAGD--FEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHF 55

Query: 94  AEEALKLCPTNVKV 107
           +  A+K  P   + 
Sbjct: 56  STLAIKQNPLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 41  YVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL 100
            +K+ + +  +A+  Y +A+        E +  ++N A V    G  + A    +EA+++
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

Query: 101 CPTNVK 106
            PT   
Sbjct: 369 SPTFAD 374

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 9/72 (12%)

Query: 31  AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRA 90
           AI L  +G     K    +  A+D ++   +        +S +  N   +  +L N   A
Sbjct: 5   AISLWNEGVLAADKKD--WKGALDAFSAVQD-------PHSRICFNIGCMYTILKNMTEA 55

Query: 91  FTDAEEALKLCP 102
                 ++    
Sbjct: 56  EKAFTRSINRDK 67

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 5e-04
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 32/105 (30%)

Query: 30  AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQN-------------------------- 63
           +A ELKE+GN      K  Y +A  CY RAI +N                          
Sbjct: 3   SAQELKEQGNRLFVGRK--YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 64  ----VLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN 104
               +  D ++   +       L + +Y  A  + + A  L    
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 6e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 36  EKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAE 95
           E+G   +++G     +A+  +  A+ Q    D ++   +               A +   
Sbjct: 24  EEGLRRLQEGD--LPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALR 77

Query: 96  EALKLCP 102
             L+L P
Sbjct: 78  RCLELKP 84

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQN 63
          ELKEKGN+ +  G     DA+ CY+ AI  +
Sbjct: 5  ELKEKGNKALSVGN--IDDALQCYSEAIKLD 33

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 38  GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA 97
               + +G+     A++    AI        +++ L ++   +  + G++ RA     ++
Sbjct: 3   WKNALSEGQ--LQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQS 56

Query: 98  LKLCPTN 104
           +KL P  
Sbjct: 57  IKLFPEY 63

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 33.6 bits (75), Expect = 0.003
 Identities = 13/72 (18%), Positives = 22/72 (30%)

Query: 48  HYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV 107
                +    + +    L+D E + L   R  +   LG    A  D  +AL + P   +V
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 108 VILCSGSHPNQF 119
                       
Sbjct: 74  FNYLGIYLTQAG 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.73
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.69
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.69
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.66
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.65
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.61
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.6
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.59
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.54
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.35
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.13
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.1
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.94
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.94
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.92
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.87
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.71
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.7
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.32
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.16
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.08
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.89
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.69
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.57
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.39
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.05
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	92.15
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	91.76
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.64
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	86.52
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	82.99
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.09
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	80.2

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=6.7e-19  Score=113.96  Aligned_cols=81  Identities=33%  Similarity=0.466  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+.+.|+.+++.|  +|++|+..|+++|++    +|.++.+|+++|.||.++|+|++|+.+|+++++++|+++.+|++
T Consensus         4 a~~l~~~Gn~~~~~g--~~~~Ai~~~~kal~~----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~   77 (201)
T d2c2la1           4 AQELKEQGNRLFVGR--KYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence            667899999999998  999999999999999    99999999999999999999999999999999999999999999


Q ss_pred             hhccCcC
Q 033440          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.+|..
T Consensus        78 lg~~~~~   84 (201)
T d2c2la1          78 LGQCQLE   84 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998854

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.6e-18  Score=103.00  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=88.0

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+..++..+|+++..+..+|.++...|  ++++|+..|.+++.+    +|+++.+++++|.++..+|++++|+.
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~~g~~~~~~~~~~~A~~   92 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--DYQKAYEDGCKTVDL----KPDWGKGYSRKAAALEFLNRFEEAKR   92 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhcccccccccc--cccccchhhhhHHHh----ccchhhHHHHHHHHHHHccCHHHHHH
Confidence            356788899999999999999999999999988  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhcc
Q 033440           93 DAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      +++++++++|+++.++..++.+
T Consensus        93 ~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          93 TYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999888765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.7e-18  Score=102.97  Aligned_cols=81  Identities=35%  Similarity=0.506  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      +..+.+.|+.++..|  +|++|+..|+++|.+    +|+++.++.++|.|+.++|++++|+.++.++++++|+++.+|++
T Consensus         3 ~~~l~~~g~~~~~~g--~~~eAi~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   76 (117)
T d1elwa_           3 VNELKEKGNKALSVG--NIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   76 (117)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhc----CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHH
Confidence            566788999999999  999999999999999    99999999999999999999999999999999999999999999


Q ss_pred             hhccCcC
Q 033440          111 CSGSHPN  117 (119)
Q Consensus       111 ~a~~~~~  117 (119)
                      +|.++..
T Consensus        77 ~g~~~~~   83 (117)
T d1elwa_          77 KAAALEF   83 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998743

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-17  Score=105.43  Aligned_cols=80  Identities=33%  Similarity=0.441  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVIL  110 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~  110 (119)
                      ++.+..+|+.+++.|  +|++|+..|++++.+    +|+++.+++++|.|++.+|++++|+.+|+++++++|+++.+|+.
T Consensus        10 a~~l~~~gn~~~~~~--~y~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_          10 AEELKTQANDYFKAK--DYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHhhhcccc----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            455666677777666  677777777777776    66667777777777777777777777777777777777766666


Q ss_pred             hhccCc
Q 033440          111 CSGSHP  116 (119)
Q Consensus       111 ~a~~~~  116 (119)
                      +|.++.
T Consensus        84 ~g~~~~   89 (159)
T d1a17a_          84 RAASNM   89 (159)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.5e-17  Score=102.11  Aligned_cols=80  Identities=25%  Similarity=0.306  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..+.++|+.+++.|  +|++|+.+|+++|++    +|+++.++.++|.||..+|+|++|+.+|+++++++|.+..++.
T Consensus         3 ~a~~~k~~G~~~~~~~--~y~~Ai~~y~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKK--DFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh----CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            5778899999999999  999999999999999    9999999999999999999999999999999999998876666


Q ss_pred             HhhccC
Q 033440          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .+|.+|
T Consensus        77 ~~a~~~   82 (128)
T d1elra_          77 QIAKAY   82 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.2e-16  Score=99.74  Aligned_cols=95  Identities=26%  Similarity=0.313  Sum_probs=90.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..+.++..++|+++..|..+|.+++..|  ++++|+..|.++|++    +|.++.++.++|.|+..+|++++|+.+
T Consensus        27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~kal~~----~p~~~~a~~~~g~~~~~~g~~~eA~~~  100 (159)
T d1a17a_          27 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--CYGYALGDATRAIEL----DKKYIKGYYRRAASNMALGKFRAALRD  100 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhhhccccchhhhhhhhhhHHHHHhcc--ccchHHHHHHHHHHH----cccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            46788899999999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhcc
Q 033440           94 AEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~  114 (119)
                      +++++.++|+++.++..++.+
T Consensus       101 ~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_         101 YETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHH
Confidence            999999999999998877654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.2e-16  Score=106.44  Aligned_cols=96  Identities=19%  Similarity=0.145  Sum_probs=85.6

Q ss_pred             hHHhHHHHHH----hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           16 EKADLDAIAA----LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        16 ~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ++..++++..    .++..+..++.+|.++++.|  ++++|+..|+++|.+    +|+++.+++++|.++..+|++++|+
T Consensus        18 al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g--~~~~A~~~~~~al~l----~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          18 ILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHhhcc----CCCCHHHHhhhchHHHHHHHHHHhh
Confidence            3334445543    26778999999999999999  999999999999999    9999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ..|+++++++|+++.+++.+|.++..
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            99999999999999999999988753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7e-16  Score=90.17  Aligned_cols=82  Identities=13%  Similarity=0.021  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS---DSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKV  107 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a  107 (119)
                      ++..+++|..+++.|  +|.+|+..|++|+.+.+..   .++.+.++.++|.|+.++|++++|+..++++|+++|+++.+
T Consensus         5 addc~~lG~~~~~~g--~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYTEA--DYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            456789999999999  9999999999999884432   34567899999999999999999999999999999999999


Q ss_pred             HHHhhcc
Q 033440          108 VILCSGS  114 (119)
Q Consensus       108 ~~~~a~~  114 (119)
                      +.+++..
T Consensus        83 ~~Nl~~~   89 (95)
T d1tjca_          83 NGNLKYF   89 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.65  E-value=9.4e-16  Score=96.61  Aligned_cols=86  Identities=26%  Similarity=0.309  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCc------------chHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDS------------ENSVLYANRAHVNLLLGNYRRAFTDAEE   96 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~a~~~~~l~~~~~A~~~~~~   96 (119)
                      ..+..+.+.|+.+|+.|  +|.+|+..|+++|...+....            ....++.|+|.||+++|+|.+|+.+|.+
T Consensus        15 ~~a~~~~~~G~~~f~~~--~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKN--EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            45788899999999998  999999999999987544211            1235788999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHhhccCc
Q 033440           97 ALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        97 al~l~p~~~~a~~~~a~~~~  116 (119)
                      +|+++|+++++|+++|.+|.
T Consensus        93 al~~~p~~~ka~~~~g~~~~  112 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANM  112 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHH
T ss_pred             cccccchhhhhhHHhHHHHH
Confidence            99999999999999999875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.64  E-value=5.7e-16  Score=92.97  Aligned_cols=79  Identities=16%  Similarity=0.141  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440           33 ELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        33 ~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      ..+++|..+++.|  ++++|+..|+++|..    +|+++.++.++|.++..+|++++|+.+++++++++|++..+|+.+|
T Consensus        18 ~~~~~g~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          18 NPMEEGLSMLKLA--NLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             CHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--hhHHHHHHHhhhccc----ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            3578899999998  999999999999999    9999999999999999999999999999999999999999999999


Q ss_pred             ccCcC
Q 033440          113 GSHPN  117 (119)
Q Consensus       113 ~~~~~  117 (119)
                      .+|..
T Consensus        92 ~~y~~   96 (112)
T d1hxia_          92 VSHTN   96 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-15  Score=93.47  Aligned_cols=97  Identities=14%  Similarity=0.014  Sum_probs=84.3

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcch--HHHHHHHHHHHHHhcCHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSEN--SVLYANRAHVNLLLGNYRRA   90 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~a~~~~~l~~~~~A   90 (119)
                      +++.+.+.++++++|.++.+++++|.++++.+ .+++++|+..|++++..    +|.+  +.+++++|.+|..+|+|++|
T Consensus        16 ~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~~~~Lg~~y~~~g~~~~A   91 (122)
T d1nzna_          16 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHHHHHHHHHHHHHhhhHHH
Confidence            35567888999999999999999999998632 12778899999999998    7655  56899999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHhhcc
Q 033440           91 FTDAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      +.+++++|+++|++..+...++.+
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHH
Confidence            999999999999999998877654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.62  E-value=1.4e-15  Score=96.96  Aligned_cols=87  Identities=26%  Similarity=0.270  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-----------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-----------DSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      ..+..+.+.|+.+|+.|  +|.+|+..|+++|...+..           .+....++.|+|.||+++|+|.+|+.+|+++
T Consensus        13 ~~a~~~~e~G~~~~~~~--~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGG--KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            35778888999999988  9999999999998764332           1223457888999999999999999999999


Q ss_pred             HhhCCCCHHHHHHhhccCcC
Q 033440           98 LKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~~  117 (119)
                      +.++|+++.+++++|.++..
T Consensus        91 l~l~p~~~~a~~~~~~~~~~  110 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLL  110 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHH
Confidence            99999999999999888743

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=4.4e-15  Score=94.56  Aligned_cols=85  Identities=20%  Similarity=0.207  Sum_probs=79.6

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .++|..+..+.++|.++++.|  +|++|+..|+++|++    +|.++.+++++|.++..+|++++|+.+++++++++|++
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~--~~~~Ai~~~~~al~~----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMS--DWQGAVDSCLEALEI----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhChhhHHHHHHHHHHHHhhc--ccchhhhhhhhhhhh----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            356888899999999999999  999999999999999    99999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccC
Q 033440          105 VKVVILCSGSH  115 (119)
Q Consensus       105 ~~a~~~~a~~~  115 (119)
                      ..++..++.+.
T Consensus       145 ~~~~~~l~~~~  155 (169)
T d1ihga1         145 KAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988877653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6.4e-16  Score=99.64  Aligned_cols=86  Identities=15%  Similarity=0.136  Sum_probs=81.5

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+.+++.++|.++..|..+|.++++.|  +|++|+..|.++|.+    +|+++.+|+++|.+|..+|+|++|+.
T Consensus        20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~--~~~~Ai~~~~~al~l----~p~~~~a~~~lg~~~~~l~~~~~A~~   93 (201)
T d2c2la1          20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--QPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIA   93 (201)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh--hhhhhhHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            357888999999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCC
Q 033440           93 DAEEALKLCPTN  104 (119)
Q Consensus        93 ~~~~al~l~p~~  104 (119)
                      .+++++.++|++
T Consensus        94 ~~~~al~l~p~~  105 (201)
T d2c2la1          94 NLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHhCccc
Confidence            999999998743

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=105.84  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=81.1

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHH
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAF   91 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~   91 (119)
                      ..+++++.++.++.++|++..+|..+|.++...|+ ++++|+..++++++.    +|++..++.++|.++..+|++++|+
T Consensus        58 ~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~-~~~eal~~~~~al~~----~p~~~~a~~~~~~~~~~l~~~~eAl  132 (315)
T d2h6fa1          58 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-DLHEEMNYITAIIEE----QPKNYQVWHHRRVLVEWLRDPSQEL  132 (315)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             chHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHH----HHhhhhHHHHHhHHHHhhccHHHHH
Confidence            35677788888888888888888888888877652 588888888888888    8888888888888888888888888


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhccC
Q 033440           92 TDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ..++++++++|.+..+|+.+|.++
T Consensus       133 ~~~~kal~~dp~n~~a~~~~~~~~  156 (315)
T d2h6fa1         133 EFIADILNQDAKNYHAWQHRQWVI  156 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcchHHHHHHHHHH
Confidence            888888888888888888887665

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.2e-15  Score=96.40  Aligned_cols=86  Identities=23%  Similarity=0.270  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC-----------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD-----------SENSVLYANRAHVNLLLGNYRRAFTDAEEAL   98 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al   98 (119)
                      .+..+.+.|+.+|+.|  +|++|+..|+++|...+...           +....++.++|.||+++|+|++|+.++++++
T Consensus        12 ~a~~l~~~G~~~~~~~--~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEG--KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            4778889999999988  99999999999998844321           1233678889999999999999999999999


Q ss_pred             hhCCCCHHHHHHhhccCcC
Q 033440           99 KLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        99 ~l~p~~~~a~~~~a~~~~~  117 (119)
                      +++|+++.+++++|.++..
T Consensus        90 ~~~p~~~~a~~~~g~~~~~  108 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLA  108 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHH
Confidence            9999999999999988753

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=104.16  Aligned_cols=98  Identities=18%  Similarity=0.185  Sum_probs=86.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      +++...++.+....|.....+..+|.++...|  ++++|+..|++++++    +|+++.+++++|.++..+|++++|+..
T Consensus       288 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~  361 (388)
T d1w3ba_         288 AEAEDCYNTALRLCPTHADSLNNLANIKREQG--NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--CHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHhhhccCCccchhhhHHHHHHHHCC--CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34566677777778888888888899999888  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCcC
Q 033440           94 AEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++++|+++.+|+++|.+|..
T Consensus       362 ~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         362 YKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=5.5e-15  Score=98.26  Aligned_cols=96  Identities=13%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+++++.++|+++.++..+|.++...|  ++++|+..|++++.+    +|+++.++.++|.++..+|++++|+.
T Consensus        53 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~  126 (259)
T d1xnfa_          53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--NFDAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGRDKLAQD  126 (259)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH--HHHHhhhhhhHHHHH----HhhhhhhHHHHHHHHHHHhhHHHHHH
Confidence            356788899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhcc
Q 033440           93 DAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      .++++++++|.+...+..++.+
T Consensus       127 ~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_         127 DLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhccccHHHHHHHHHH
Confidence            9999999999998877766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=6.2e-15  Score=92.20  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=86.8

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhC--------hhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKG--------KKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      ++++..++.+.+++|+++.++..+|.++...+        ++.+++|+..|+++|++    +|+++.+++++|.+|..+|
T Consensus        14 e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l----~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          14 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----DPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh----cchhhHHHhhHHHHHHHcc
Confidence            46778899999999999999999999998543        12678999999999999    9999999999999998876


Q ss_pred             C-----------HHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           86 N-----------YRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        86 ~-----------~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +           |.+|+..++++++++|++..++..++.+.
T Consensus        90 ~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          90 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            4           79999999999999999999998887653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.9e-15  Score=104.98  Aligned_cols=96  Identities=15%  Similarity=0.005  Sum_probs=91.5

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++.+..++|+...+|..+|.++...|  ++++|+..+++++++    +|.+..+++++|.++..+|++++|+.+
T Consensus        95 ~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~--~~~eAl~~~~kal~~----dp~n~~a~~~~~~~~~~~~~~~~Al~~  168 (315)
T d2h6fa1          95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR--DPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQY  168 (315)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc--cHHHHHHHHhhhhhh----hhcchHHHHHHHHHHHHHHhhHHHHHH
Confidence            57888999999999999999999999999999  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccC
Q 033440           94 AEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      ++++++++|.+..+|+.+|.++
T Consensus       169 ~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         169 VDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCccHHHHHHHHHHH
Confidence            9999999999999999998764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=8e-15  Score=93.31  Aligned_cols=86  Identities=21%  Similarity=0.262  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhcc------------CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNV------------LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA   97 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~------------~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a   97 (119)
                      .+..+...|+.++..|  +|++|+..|+++|...+            ...|..+.++.++|.|+.++|+|++|+.+|+++
T Consensus        26 ~a~~~~~~~~~~~~~~--~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQ--NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            4566789999999998  99999999999996522            125778889999999999999999999999999


Q ss_pred             HhhCCCCHHHHHHhhccCcC
Q 033440           98 LKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        98 l~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++|+++.+|+++|.+|..
T Consensus       104 l~~~p~~~~a~~~~g~~~~~  123 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQG  123 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHH
Confidence            99999999999999998854

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.3e-15  Score=95.11  Aligned_cols=85  Identities=24%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             HhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCC
Q 033440           25 ALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTN  104 (119)
Q Consensus        25 ~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~  104 (119)
                      .+.+.++..++++|.+++..|  +|++|+..|+++|++    +|+++.+|+++|.|+.++|+|++|+.+|++++...|.+
T Consensus        30 ~i~~~~~~~~~nlG~~~~~~g--~~~~A~~~~~kAl~l----dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          30 AVQDPHSRICFNIGCMYTILK--NMTEAEKAFTRSINR----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             TSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hcCCCCHHHHHHHHHHHHHcC--CchhHHHHHHHHHHH----hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            345556788999999999999  999999999999999    99999999999999999999999999999999876543


Q ss_pred             ----------------HHHHHHhhccC
Q 033440          105 ----------------VKVVILCSGSH  115 (119)
Q Consensus       105 ----------------~~a~~~~a~~~  115 (119)
                                      ..+++++|.++
T Consensus       104 ~~~~~~~~~~~~~~~~~e~~~n~a~~~  130 (192)
T d1hh8a_         104 QLIDYKILGLQFKLFACEVLYNIAFMY  130 (192)
T ss_dssp             SEEECGGGTBCCEEEHHHHHHHHHHHH
T ss_pred             chHHHHHhhhhcccchHHHHHHHHHHH
Confidence                            35667777655

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.1e-14  Score=88.91  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ....+.++|.++++.|  +|++|+..++++|.+    +|+++.+++++|.|+..+|+|++|+.+++++++++|+++.+..
T Consensus        61 ~~~~~~nla~~y~k~~--~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~  134 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQ--AFSAAIESCNKALEL----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT  134 (170)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhh--hcccccchhhhhhhc----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4556778999999999  999999999999999    9999999999999999999999999999999999999999988


Q ss_pred             HhhccC
Q 033440          110 LCSGSH  115 (119)
Q Consensus       110 ~~a~~~  115 (119)
                      .++.++
T Consensus       135 ~l~~~~  140 (170)
T d1p5qa1         135 QLAVCQ  140 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=99.50  Aligned_cols=92  Identities=15%  Similarity=0.088  Sum_probs=53.7

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDA   94 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~   94 (119)
                      +++..++++...+|+.+..+..+|.+++..|  ++++|+..|++++++    +|+++.+++++|.++..+|++++|+..+
T Consensus       190 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~  263 (323)
T d1fcha_         190 KAVDCFTAALSVRPNDYLLWNKLGATLANGN--QSEEAVAAYRRALEL----QPGYIRSRYNLGISCINLGAHREAVEHF  263 (323)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhcccccccccccccccchhhhhhcccccc--cchhHHHHHHHHHHH----hhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4445555555566666666666666666665  666666666666666    6666666666666666666666666666


Q ss_pred             HHHHhhCCCCHHHHHHhh
Q 033440           95 EEALKLCPTNVKVVILCS  112 (119)
Q Consensus        95 ~~al~l~p~~~~a~~~~a  112 (119)
                      +++++++|++..++...+
T Consensus       264 ~~al~l~p~~~~~~~~~~  281 (323)
T d1fcha_         264 LEALNMQRKSRGPRGEGG  281 (323)
T ss_dssp             HHHHHHHHTC------CC
T ss_pred             HHHHHhCCcChhhhhhhH
Confidence            666666666555444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.54  E-value=6.9e-14  Score=87.84  Aligned_cols=79  Identities=19%  Similarity=0.165  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      ....+.++|.++++.|  +|++|+..++++|++    +|.++.+++++|.|+..+|+|++|+.+++++++++|++..+..
T Consensus        66 ~~~~~~Nla~~~~~l~--~~~~Al~~~~~al~~----~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1          66 EISCNLNLATCYNKNK--DYPKAIDHASKVLKI----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHhhHHHHHHHhc--ccchhhhhhhccccc----cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4567889999999999  999999999999999    9999999999999999999999999999999999999999988


Q ss_pred             Hhhcc
Q 033440          110 LCSGS  114 (119)
Q Consensus       110 ~~a~~  114 (119)
                      .++.+
T Consensus       140 ~l~~~  144 (153)
T d2fbna1         140 SYELC  144 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-14  Score=93.63  Aligned_cols=79  Identities=15%  Similarity=0.081  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+..++++|..++..|  +|++|+..|++   +    .|.++.+++++|.||..+|++++|+.+|+++++++|+++.+|+
T Consensus         4 ~~~~l~~~g~~~~~~~--d~~~Al~~~~~---i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~   74 (192)
T d1hh8a_           4 EAISLWNEGVLAADKK--DWKGALDAFSA---V----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF   74 (192)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHT---S----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCC--CHHHHHHHHHh---c----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHH
Confidence            3556778999999998  99999999975   3    4557789999999999999999999999999999999999999


Q ss_pred             HhhccCcC
Q 033440          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      ++|.++..
T Consensus        75 ~~g~~~~~   82 (192)
T d1hh8a_          75 QRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998854

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.53  E-value=1.2e-13  Score=87.76  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=75.5

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      .+-....+.++|.++++.|  +|.+|+..++++|.+    +|.++.+++++|.|+..+|+|++|+.++.+++.++|++..
T Consensus        60 ~~~~~~~~~Nla~~~~~l~--~~~~Ai~~~~~al~l----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          60 ESFLLAAFLNLAMCYLKLR--EYTKAVECCDKALGL----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             chhHHHHHHhHHHHHHHhh--hcccchhhhhhhhhc----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3445667888999999999  999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 033440          107 VVILCSGS  114 (119)
Q Consensus       107 a~~~~a~~  114 (119)
                      ++..++.+
T Consensus       134 ~~~~l~~~  141 (168)
T d1kt1a1         134 ARLQIFMC  141 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6e-14  Score=95.84  Aligned_cols=96  Identities=20%  Similarity=0.173  Sum_probs=85.7

Q ss_pred             hHHhHHHHHHhcHH--HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           16 EKADLDAIAALKES--AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        16 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ....+.++..++|+  ++..+..+|..+...|  ++++|+..|++++..    .|+++.++.++|.++..+|++++|+..
T Consensus       155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~  228 (323)
T d1fcha_         155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--EYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSEEAVAA  228 (323)
T ss_dssp             HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHH--HHhhhhccccccccc----ccccccchhhhhhcccccccchhHHHH
Confidence            34455666666665  4677889999999998  999999999999999    999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCcC
Q 033440           94 AEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      |+++++++|+++.+|+.+|.+|..
T Consensus       229 ~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         229 YRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHH
Confidence            999999999999999999988753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=8.2e-14  Score=83.29  Aligned_cols=80  Identities=14%  Similarity=0.026  Sum_probs=76.2

Q ss_pred             ChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHH
Q 033440           13 TESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~   92 (119)
                      .++++..+++++.++|+++.+|..+|.++...|  ++++|+..|++++++    +|+++.++.++|.+|..+|++++|+.
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--~~~~A~~~~~~al~~----~p~~~~a~~~la~~y~~~g~~~~A~~  105 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--KDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALA  105 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhh--hHHHhhccccccccc----ccccccchHHHHHHHHHCCCHHHHHH
Confidence            356788899999999999999999999999999  999999999999999    99999999999999999999999999


Q ss_pred             HHHHHH
Q 033440           93 DAEEAL   98 (119)
Q Consensus        93 ~~~~al   98 (119)
                      .+++.|
T Consensus       106 ~l~~~l  111 (112)
T d1hxia_         106 SLRAWL  111 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999976

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.3e-13  Score=94.47  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=81.9

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ++++..++++..++|+++..+..+|..+...|  ++++|+..+..++..    .|.++..+..+|.++..+|++++|+..
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~  327 (388)
T d1w3ba_         254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKG--SVAEAEDCYNTALRL----CPTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhhhcc----CCccchhhhHHHHHHHHCCCHHHHHHH
Confidence            45667777777888888888888888888877  888888888888888    888888888888888888999999999


Q ss_pred             HHHHHhhCCCCHHHHHHhhccCcC
Q 033440           94 AEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      ++++++++|+++.+++.+|.++..
T Consensus       328 ~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         328 YRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999888887753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.7e-13  Score=80.17  Aligned_cols=88  Identities=19%  Similarity=0.264  Sum_probs=78.0

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-------HHHHHHHHHHHHhcC
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-------VLYANRAHVNLLLGN   86 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~a~~~~~l~~   86 (119)
                      ++++..+++++.++|+++..+..+|.++++.|  +|++|+..++++|++    +|.++       .+|.++|.++..+++
T Consensus        21 ~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~l----~~~~~~~~~~~a~~~~~lg~~~~~~~~   94 (128)
T d1elra_          21 DTALKHYDKAKELDPTNMTYITNQAAVYFEKG--DYNKCRELCEKAIEV----GRENREDYRQIAKAYARIGNSYFKEEK   94 (128)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC--chHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            57888999999999999999999999999999  999999999999999    65544       477788888999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHH
Q 033440           87 YRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        87 ~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      +++|+..+++++..+|+ +...
T Consensus        95 ~~~A~~~~~kal~~~~~-~~~~  115 (128)
T d1elra_          95 YKDAIHFYNKSLAEHRT-PDVL  115 (128)
T ss_dssp             HHHHHHHHHHHHHHCCC-HHHH
T ss_pred             HHHHHHHHHHHHhcCCC-HHHH
Confidence            99999999999999875 4433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=6.8e-13  Score=82.68  Aligned_cols=71  Identities=17%  Similarity=0.095  Sum_probs=64.0

Q ss_pred             HHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           40 EYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL----------GNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        40 ~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l----------~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                      .+-+.+  .|++|+..|++++++    +|+++.+++++|.++..+          +.+++|+..++++++++|+++.+|+
T Consensus         6 ~~~r~~--~fe~A~~~~e~al~~----~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1           6 EFDRIL--LFEQIRQDAENTYKS----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             SHHHHH--HHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHc--cHHHHHHHHHHHHhh----CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            345556  899999999999999    999999999999999864          5568999999999999999999999


Q ss_pred             HhhccCc
Q 033440          110 LCSGSHP  116 (119)
Q Consensus       110 ~~a~~~~  116 (119)
                      ++|.+|.
T Consensus        80 ~lG~~y~   86 (145)
T d1zu2a1          80 CIGNAYT   86 (145)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            9998874

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.30  E-value=2.7e-12  Score=80.42  Aligned_cols=85  Identities=16%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC--------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD--------SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +-.+...|+.+++.|  +|++|+..|+++|++.+...        +..+.+|.++|.||..+|+|++|+.++.+++++.|
T Consensus         9 a~~~l~~g~~~~~~g--~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           9 AYLALSDAQRQLVAG--EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            333445599999999  99999999999999844321        12357899999999999999999999999998754


Q ss_pred             -----------CCHHHHHHhhccCcC
Q 033440          103 -----------TNVKVVILCSGSHPN  117 (119)
Q Consensus       103 -----------~~~~a~~~~a~~~~~  117 (119)
                                 ....+++++|.+|..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~  112 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDG  112 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHH
Confidence                       234578899988743

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.20  E-value=3.5e-11  Score=75.24  Aligned_cols=87  Identities=10%  Similarity=0.043  Sum_probs=71.6

Q ss_pred             hhhHHhHHHHHHhcHH------------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC-------CcchHHHH
Q 033440           14 ESEKADLDAIAALKES------------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS-------DSENSVLY   74 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~   74 (119)
                      ++++..+++++.++|+            .+..+.++|.++...|  +|++|+..++++|.+.+..       .+....++
T Consensus        26 ~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~  103 (156)
T d2hr2a1          26 DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--SFDEALHSADKALHYFNRRGELNQDEGKLWISAV  103 (156)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC--ccchhhHhhhhhhhcccccccccccccchhHHHH
Confidence            4567777887776543            4678999999999999  9999999999999873321       12345689


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           75 ANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        75 ~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      +++|.+|..+|++++|+.+|++++++.|
T Consensus       104 ~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1         104 YSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999999865

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1e-11  Score=75.30  Aligned_cols=77  Identities=13%  Similarity=-0.009  Sum_probs=67.2

Q ss_pred             HHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhCCCC--HHHHH
Q 033440           35 KEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLL---GNYRRAFTDAEEALKLCPTN--VKVVI  109 (119)
Q Consensus        35 ~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l---~~~~~A~~~~~~al~l~p~~--~~a~~  109 (119)
                      .++++.+...+  ++++|.+.|++++.+    +|.++.+++|+|.|+++.   +++.+|+..+++++..+|.+  ..+++
T Consensus         3 ~~l~n~~~~~~--~l~~Ae~~Y~~aL~~----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~   76 (122)
T d1nzna_           3 EAVLNELVSVE--DLLKFEKKFQSEKAA----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   76 (122)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCHH--HHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence            35678888888  999999999999999    999999999999999874   45667999999999999865  45899


Q ss_pred             HhhccCcC
Q 033440          110 LCSGSHPN  117 (119)
Q Consensus       110 ~~a~~~~~  117 (119)
                      .+|.+|..
T Consensus        77 ~Lg~~y~~   84 (122)
T d1nzna_          77 YLAVGNYR   84 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.6e-10  Score=84.22  Aligned_cols=81  Identities=12%  Similarity=-0.042  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHH
Q 033440           29 SAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVV  108 (119)
Q Consensus        29 ~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~  108 (119)
                      .....+..+|..+...|  +|++|+..|.+|+.+    .|++..+|+++|.++...|++.+|+.+|.+++.++|.++.++
T Consensus       150 ~~~~~~~~LG~l~~~~~--~~~~A~~~y~~A~~l----~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~  223 (497)
T d1ya0a1         150 ICQHCLVHLGDIARYRN--QTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS  223 (497)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred             CHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence            34578889999999988  999999999999999    999999999999999999999999999999999999999999


Q ss_pred             HHhhccC
Q 033440          109 ILCSGSH  115 (119)
Q Consensus       109 ~~~a~~~  115 (119)
                      .+++.++
T Consensus       224 ~nL~~~~  230 (497)
T d1ya0a1         224 TNLQKAL  230 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=1e-10  Score=80.44  Aligned_cols=99  Identities=9%  Similarity=0.004  Sum_probs=88.7

Q ss_pred             hhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHH-HHHHHHHHHhcCHHHHHH
Q 033440           14 ESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLY-ANRAHVNLLLGNYRRAFT   92 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~a~~~~~l~~~~~A~~   92 (119)
                      ++++..++.+...+|++...|..+|..+...+++++++|+..+.++++.    +|.+...+ ...|.++...+++++|+.
T Consensus        90 ~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh----CchhhhhhhhHHHHHHHhccccHHHHH
Confidence            3567778888999999999999999999887755799999999999999    99888775 567889999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHhhccCc
Q 033440           93 DAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        93 ~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      .+++++.++|++..+|+.+|.++.
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLP  189 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999999999999999998764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=4.8e-10  Score=71.87  Aligned_cols=89  Identities=10%  Similarity=0.024  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC------------------CcchHHHHHHHHHHHHHhcCHH
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS------------------DSENSVLYANRAHVNLLLGNYR   88 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~a~~~~~l~~~~   88 (119)
                      |-..-+.+...|..+...|  ++++|+..|.+|+.+.++.                  .+....++.+++.++..+|+++
T Consensus         7 D~~~f~~~~~~g~~~~~~g--~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAG--RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            4455678889999999999  9999999999999984321                  1112367899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHhhccCcC
Q 033440           89 RAFTDAEEALKLCPTNVKVVILCSGSHPN  117 (119)
Q Consensus        89 ~A~~~~~~al~l~p~~~~a~~~~a~~~~~  117 (119)
                      +|+..+++++.++|.+..+|..++.++..
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~  113 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYL  113 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.94  E-value=1.2e-09  Score=73.91  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             HHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHHHhhccC
Q 033440           38 GNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVILCSGSH  115 (119)
Q Consensus        38 g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~a~~~  115 (119)
                      +..+++.|  ++++|+..|+++|+.    +|.++.++.+++.++...|++++|+..++++++++|++..++..++.++
T Consensus         3 ~~~aL~~G--~l~eAl~~l~~al~~----~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll   74 (264)
T d1zbpa1           3 WKNALSEG--QLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   74 (264)
T ss_dssp             HHHHTTTT--CHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHCC--CHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34566777  899999999999999    8999999999999999999999999999999999998888887766543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=7.3e-09  Score=62.50  Aligned_cols=99  Identities=13%  Similarity=-0.014  Sum_probs=75.7

Q ss_pred             CCCChhhHHhHHHH-HHh-cH-HHHHHHHHHHHHHHHhC-hhcHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHh
Q 033440           10 EPKTESEKADLDAI-AAL-KE-SAAIELKEKGNEYVKKG-KKHYSDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLL   84 (119)
Q Consensus        10 ~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~g~~~~~~g-~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l   84 (119)
                      +|.+.++...+..- .+. .+ ....+-++.|+++.+.. ..+...++.+++.++..    +|.+. ..++++|.+|+++
T Consensus        11 ~pl~~~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~----~p~~~rd~lY~Lav~yykl   86 (124)
T d2pqrb1          11 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYKL   86 (124)
T ss_dssp             SCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc----CchhHHHHHHHHHHHHHHH
Confidence            44455555555542 222 11 23567788899988542 12678999999999998    88664 8999999999999


Q ss_pred             cCHHHHHHHHHHHHhhCCCCHHHHHHhh
Q 033440           85 GNYRRAFTDAEEALKLCPTNVKVVILCS  112 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~p~~~~a~~~~a  112 (119)
                      |+|++|...++++|+++|+|..+...+.
T Consensus        87 gdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          87 GEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            9999999999999999999999876554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=7.7e-09  Score=70.81  Aligned_cols=101  Identities=9%  Similarity=-0.044  Sum_probs=84.1

Q ss_pred             CCChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhCh--------hcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440           11 PKTESEKADLDAIAALKESAAIELKEKGNEYVKKGK--------KHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      +.+++++..+++++.++|++..+|..++..+...+.        +++.+|+..+++++..    +|.++.+++++|.++.
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~----~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh----CCCcHHHHHHhhHHHH
Confidence            345788889999999999999988776666544320        1589999999999999    9999999999999998


Q ss_pred             HhcC--HHHHHHHHHHHHhhCCCCHHHHH-HhhccC
Q 033440           83 LLGN--YRRAFTDAEEALKLCPTNVKVVI-LCSGSH  115 (119)
Q Consensus        83 ~l~~--~~~A~~~~~~al~l~p~~~~a~~-~~a~~~  115 (119)
                      .+++  +++|+..+.+++.++|.+..+++ ..|.++
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  154 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAA  154 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHH
Confidence            8875  89999999999999999998865 555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=1.8e-08  Score=64.35  Aligned_cols=78  Identities=15%  Similarity=0.102  Sum_probs=70.0

Q ss_pred             HHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH---
Q 033440           21 DAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEA---   97 (119)
Q Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~a---   97 (119)
                      .....+.+....++..++..+...|  ++++|+..+++++.+    +|.+..+|.+++.++..+|++.+|+..|+++   
T Consensus        57 ~~r~~l~~~~~~a~~~la~~~~~~g--~~~~Al~~~~~al~~----~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~  130 (179)
T d2ff4a2          57 PFATALVEDKVLAHTAKAEAEIACG--RASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  130 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3344567778899999999999999  999999999999999    9999999999999999999999999999997   


Q ss_pred             ----HhhCCCC
Q 033440           98 ----LKLCPTN  104 (119)
Q Consensus        98 ----l~l~p~~  104 (119)
                          +.++|..
T Consensus       131 L~~eLG~~P~~  141 (179)
T d2ff4a2         131 LADDLGIDPGP  141 (179)
T ss_dssp             HHHHHSCCCCH
T ss_pred             HHHHhCCCcCH
Confidence                5577753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.4e-10  Score=80.59  Aligned_cols=86  Identities=10%  Similarity=-0.005  Sum_probs=50.3

Q ss_pred             HHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           23 IAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        23 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      ...++|+....+..+|..+.+.|  +++.|+..+.+++..    +|  ..++.++|.++...|+|++|+..|.+|++++|
T Consensus       112 ~~~l~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~----~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P  183 (497)
T d1ya0a1         112 VFNVDLPCRVKSSQLGIISNKQT--HTSAIVKPQSSSCSY----IC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP  183 (497)
T ss_dssp             ---------------------------------CCHHHHH----HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHCCChhhHHHHHHhHHHHHhCC--CHHHHHHHHHHHhCC----CH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            33567888999999999999988  999999999999988    55  45788899999999999999999999999999


Q ss_pred             CCHHHHHHhhccCc
Q 033440          103 TNVKVVILCSGSHP  116 (119)
Q Consensus       103 ~~~~a~~~~a~~~~  116 (119)
                      +++.+|+.+|.++.
T Consensus       184 ~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         184 SNGQPYNQLAILAS  197 (497)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHH
Confidence            99999999998874

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.5e-08  Score=58.08  Aligned_cols=66  Identities=9%  Similarity=0.057  Sum_probs=56.2

Q ss_pred             hhhHHhHHHHHHhcHH-------HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhc
Q 033440           14 ESEKADLDAIAALKES-------AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLG   85 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~   85 (119)
                      +.++..++++..+.|.       .+..+..+|.++++.|  ++++|+..|+++|++    +|+++.++.|++.+...++
T Consensus        22 ~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g--~~~~A~~~y~~aL~l----~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          22 YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG--DLDKALLLTKKLLEL----DPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC--ChHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhC
Confidence            3566778887777554       4788999999999999  999999999999999    9999999999988766553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=4.3e-08  Score=66.17  Aligned_cols=86  Identities=15%  Similarity=0.057  Sum_probs=54.4

Q ss_pred             hhhHHhHHHHHHh------cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHH-h
Q 033440           14 ESEKADLDAIAAL------KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLL-L   84 (119)
Q Consensus        14 ~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~-l   84 (119)
                      +++.+.+.++..+      .++.+..+.+.|+++.+.|  ++++|+..|++++++.+..  .+....++.++|.++.. +
T Consensus        54 ~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  131 (290)
T d1qqea_          54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL  131 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHH
Confidence            3455555555554      3455677778888888877  8888888888887762211  11124566666666654 5


Q ss_pred             cCHHHHHHHHHHHHhhC
Q 033440           85 GNYRRAFTDAEEALKLC  101 (119)
Q Consensus        85 ~~~~~A~~~~~~al~l~  101 (119)
                      |++++|+..+.+++++.
T Consensus       132 ~~~~~A~~~~~~A~~l~  148 (290)
T d1qqea_         132 HDYAKAIDCYELAGEWY  148 (290)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777776653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.70  E-value=8.2e-08  Score=64.73  Aligned_cols=96  Identities=9%  Similarity=-0.046  Sum_probs=80.4

Q ss_pred             CChhhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccC--------------------------
Q 033440           12 KTESEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVL--------------------------   65 (119)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~--------------------------   65 (119)
                      ..++++..++++++.+|+++..+..+|..++..|  ++++|+..|++++++.|.                          
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G--~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~   88 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDG--DFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA   88 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence            3567889999999999999999999999999999  999999999999998442                          


Q ss_pred             -----CCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCHHHHH
Q 033440           66 -----SDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCPTNVKVVI  109 (119)
Q Consensus        66 -----~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~  109 (119)
                           ..|.....+...+.++...|++++|+..+.++.++.|+.+..+.
T Consensus        89 ~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          89 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence                 14455566667777788889999999999999999987765443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=8.3e-08  Score=64.01  Aligned_cols=74  Identities=11%  Similarity=-0.019  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 033440           27 KESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSD-SENSVLYANRAHVNLLLGNYRRAFTDAEEALKLCP  102 (119)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p  102 (119)
                      ++-.++...-+|.+++..|  ++++|+..|+++++..|..+ +....++..+|.++..+|++++|+..+++++.+.|
T Consensus         8 ~~~~ae~~~lrA~~~~~~g--~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~   82 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDG--NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR   82 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3445677777899999988  99999999999999933321 11245788899999999999999999999998754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.1e-07  Score=62.64  Aligned_cols=91  Identities=20%  Similarity=0.144  Sum_probs=71.2

Q ss_pred             ChhhHHhHHHHHHhcHHH------HHHHHHHHHHHHHh-ChhcHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHH
Q 033440           13 TESEKADLDAIAALKESA------AIELKEKGNEYVKK-GKKHYSDAIDCYTRAINQNVLS--DSENSVLYANRAHVNLL   83 (119)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~-g~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~a~~~~~   83 (119)
                      .++++..+.++..+.+..      ...+..+|..+... |  ++++|+..|.+++++.+..  .+....++.++|.++..
T Consensus        93 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~  170 (290)
T d1qqea_          93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHH--HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence            345666777766664443      77788899888764 7  9999999999999873321  22345678999999999


Q ss_pred             hcCHHHHHHHHHHHHhhCCCCH
Q 033440           84 LGNYRRAFTDAEEALKLCPTNV  105 (119)
Q Consensus        84 l~~~~~A~~~~~~al~l~p~~~  105 (119)
                      +|+|++|+..|.+++...|.+.
T Consensus       171 ~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         171 DGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             TTCHHHHHHHHHHHHHTTSSCT
T ss_pred             cChHHHHHHHHHHHHHhCccch
Confidence            9999999999999999987654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.2e-07  Score=61.91  Aligned_cols=65  Identities=14%  Similarity=-0.012  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhChhcHHHHHHHHHHHHhhcc--CCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 033440           34 LKEKGNEYVKKGKKHYSDAIDCYTRAINQNV--LSDSENSVLYANRAHVNLLLGNYRRAFTDAEEALKL  100 (119)
Q Consensus        34 ~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l  100 (119)
                      +..+|..++..|  ++++|+..+++++....  ...|..+.++..+|.++..+|++++|+..+++++++
T Consensus       254 ~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         254 WRNIARAQILLG--EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            334444455544  45555555555443211  012334444455555555555555555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.25  E-value=4.4e-06  Score=54.82  Aligned_cols=75  Identities=16%  Similarity=0.080  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhCCCCHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRAFTDAEEALKLCPTNVK  106 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~l~p~~~~  106 (119)
                      +.+++.+|..+++++  |+++|+.+|+++.+.      .++.+.+++|.+|..    ..++..|+..+.++....  ++.
T Consensus         2 p~~~~~lG~~~~~~~--d~~~A~~~~~kAa~~------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~   71 (265)
T d1ouva_           2 PKELVGLGAKSYKEK--DFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN   71 (265)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccc
Confidence            678999999999988  999999999999877      477889999999987    668999999999987655  566


Q ss_pred             HHHHhhccC
Q 033440          107 VVILCSGSH  115 (119)
Q Consensus       107 a~~~~a~~~  115 (119)
                      +...+|.++
T Consensus        72 a~~~l~~~~   80 (265)
T d1ouva_          72 GCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhcccccc
Confidence            666665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=9.7e-06  Score=54.59  Aligned_cols=92  Identities=9%  Similarity=0.032  Sum_probs=60.4

Q ss_pred             hHHhHHHHHH-hcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHhcCHHHHHHH
Q 033440           16 EKADLDAIAA-LKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENS-VLYANRAHVNLLLGNYRRAFTD   93 (119)
Q Consensus        16 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~a~~~~~l~~~~~A~~~   93 (119)
                      ....++++.. ..|.+...|...+......|  +++.|...|.+++..    .|.+. .++...+....+.|++++|.+.
T Consensus        83 a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~--~~~~a~~i~~~~l~~----~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          83 AANIYERAISTLLKKNMLLYFAYADYEESRM--KYEKVHSIYNRLLAI----EDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTS----SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHH----hcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            3344555443 25556666677777777766  777777777777776    66543 3566666777777777777777


Q ss_pred             HHHHHhhCCCCHHHHHHhhc
Q 033440           94 AEEALKLCPTNVKVVILCSG  113 (119)
Q Consensus        94 ~~~al~l~p~~~~a~~~~a~  113 (119)
                      +.++++..|.....+...|.
T Consensus       157 ~~~al~~~~~~~~~~~~~a~  176 (308)
T d2onda1         157 FKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             HHHHHTSTTCCTHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHH
Confidence            77777777776666655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=8e-06  Score=55.04  Aligned_cols=95  Identities=12%  Similarity=0.040  Sum_probs=66.9

Q ss_pred             hhhHHhHHHHHHhcHHH-HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH-hcCHHHHH
Q 033440           14 ESEKADLDAIAALKESA-AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL-LGNYRRAF   91 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~-l~~~~~A~   91 (119)
                      +.....+++++...|.+ ...|...+....+.|  +++.|...|.+++..    .|.+...+...+..... .|+.+.|.
T Consensus       116 ~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~--~~~~ar~i~~~al~~----~~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE--GIKSGRMIFKKARED----ARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH--CHHHHHHHHHHHHTS----TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhccCHHHHH
Confidence            34445566666666654 345677777777776  788888888888887    77777777777765443 47788888


Q ss_pred             HHHHHHHhhCCCCHHHHHHhhcc
Q 033440           92 TDAEEALKLCPTNVKVVILCSGS  114 (119)
Q Consensus        92 ~~~~~al~l~p~~~~a~~~~a~~  114 (119)
                      ..+++++...|+++..|...+..
T Consensus       190 ~i~e~~l~~~p~~~~~w~~y~~~  212 (308)
T d2onda1         190 KIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHH
Confidence            88888888888887777666543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=4.8e-05  Score=45.35  Aligned_cols=63  Identities=21%  Similarity=0.025  Sum_probs=52.9

Q ss_pred             hhhHHhHHHHHHhcHHH-HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHH
Q 033440           14 ESEKADLDAIAALKESA-AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNL   82 (119)
Q Consensus        14 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~   82 (119)
                      .+.+..++.+...+|.+ -+.++.+|..+++.|  +|+.|..+++++|++    +|++..+..-+-.+..
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklg--dy~~A~~~~~~~L~i----eP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLG--EYSMAKRYVDTLFEH----ERNNKQVGALKSMVED  118 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHH
Confidence            45777888888888765 579999999999999  999999999999999    9999987766555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00063  Score=40.14  Aligned_cols=77  Identities=16%  Similarity=0.075  Sum_probs=51.6

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcC
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGN   86 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~   86 (119)
                      +.+..+.+...  ..++.+...+|..++.    ..  |+++|+.+|.++.+.      .++.+.+++|.+|..    ..+
T Consensus        41 ~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa~~------g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          41 KLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             HHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             HHHHHHhhhhc--ccchhhhhhHHHhhhhccccch--hhHHHHHHHhhhhcc------CcchHHHHHHHHHHcCCccCCC
Confidence            44455555433  3456667777777765    33  677888888887776      456667777877776    357


Q ss_pred             HHHHHHHHHHHHhhC
Q 033440           87 YRRAFTDAEEALKLC  101 (119)
Q Consensus        87 ~~~A~~~~~~al~l~  101 (119)
                      +.+|+..++++.++.
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            888888888877765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=0.00018  Score=46.77  Aligned_cols=67  Identities=19%  Similarity=0.199  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHH----hChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Q 033440           28 ESAAIELKEKGNEYVK----KGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRAFTDAEEALK   99 (119)
Q Consensus        28 ~~~~~~~~~~g~~~~~----~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A~~~~~~al~   99 (119)
                      +.++.+...+|..+..    ..  |++.|+.+|.++.+.      .++.+.+++|.+|..    .+++.+|+..++++.+
T Consensus       175 ~g~~~A~~~lg~~y~~g~~~~~--d~~~A~~~~~~aa~~------g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~  246 (265)
T d1ouva_         175 LKDSPGCFNAGNMYHHGEGATK--NFKEALARYSKACEL------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK  246 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCC--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             ccccccccchhhhcccCccccc--chhhhhhhHhhhhcc------cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            3456677777777765    33  677777777777766      356667777777764    3367777777777777


Q ss_pred             hCC
Q 033440          100 LCP  102 (119)
Q Consensus       100 l~p  102 (119)
                      ..+
T Consensus       247 ~g~  249 (265)
T d1ouva_         247 LGA  249 (265)
T ss_dssp             HTC
T ss_pred             CcC
Confidence            664

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.39  E-value=0.0004  Score=41.05  Aligned_cols=88  Identities=7%  Similarity=-0.103  Sum_probs=65.2

Q ss_pred             hhHHhHHHHHHhcHHHHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH----hcCHHHH
Q 033440           15 SEKADLDAIAALKESAAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLL----LGNYRRA   90 (119)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~----l~~~~~A   90 (119)
                      +++..+.++....  ++.+...+|.  ....  ++++|+..|.++.+.      .++.+.+++|.+|..    ..++.+|
T Consensus        11 ~A~~~~~kaa~~g--~~~a~~~l~~--~~~~--~~~~a~~~~~~aa~~------g~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_          11 KAIQYYVKACELN--EMFGCLSLVS--NSQI--NKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHTT--CTTHHHHHHT--CTTS--CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             HHHHHHHHHHHCC--Chhhhhhhcc--cccc--CHHHHHHHHhhhhcc------cchhhhhhHHHhhhhccccchhhHHH
Confidence            4455555554433  3444555553  2334  899999999999887      578889999999886    4679999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHhhccCc
Q 033440           91 FTDAEEALKLCPTNVKVVILCSGSHP  116 (119)
Q Consensus        91 ~~~~~~al~l~p~~~~a~~~~a~~~~  116 (119)
                      +..++++.+..  ++.+.+.+|.+|.
T Consensus        79 ~~~~~~aa~~g--~~~a~~~Lg~~y~  102 (133)
T d1klxa_          79 AQYYSKACGLN--DQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHhhhhccC--cchHHHHHHHHHH
Confidence            99999998864  6889999988764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.05  E-value=0.11  Score=27.90  Aligned_cols=30  Identities=23%  Similarity=0.202  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033440           70 NSVLYANRAHVNLLLGNYRRAFTDAEEALK   99 (119)
Q Consensus        70 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~   99 (119)
                      .+..+..+|.-+++.|+|++||++.+++..
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667778888888888888887777654

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.15  E-value=0.23  Score=35.46  Aligned_cols=53  Identities=19%  Similarity=0.209  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCHHH
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQNVLSDSENSVLYANRAHVNLLLGNYRR   89 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~a~~~~~l~~~~~   89 (119)
                      ++...+.+...+..|  +|.-|+.+.+.++..    +|++..+..-++.+|..+|.-.+
T Consensus       430 ~~~~~~~a~~~~~~g--~~~wa~~l~~~~~~a----~p~~~~ar~l~a~~~~~l~~~~~  482 (505)
T d2cfua2         430 AERLLEQARASYARG--EYRWVVEVVNRLVFA----EPDNRAARELQADALEQLGYQAE  482 (505)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHhCc
Confidence            667788999999988  999999999999999    99999999999999988875443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.76  E-value=0.19  Score=27.54  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+...|..+-..|  +|++|+.+|.++|+.
T Consensus        14 ~A~~l~~~Av~~D~~g--~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          14 AAVAVLKRAVELDAES--RYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            3555667777788878  999999999999876

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.64  E-value=0.75  Score=24.54  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           30 AAIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        30 ~~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      .+..+-..+..+.+.|  .|++||+++..|...
T Consensus         7 ~AH~~~RrAer~l~~~--rydeAIech~kA~~y   37 (83)
T d2crba1           7 LAHQQSRRADRLLAAG--KYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            3555667788899988  999999998887754

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.27  Score=25.90  Aligned_cols=30  Identities=33%  Similarity=0.570  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHhChhcHHHHHHHHHHHHhh
Q 033440           31 AIELKEKGNEYVKKGKKHYSDAIDCYTRAINQ   62 (119)
Q Consensus        31 ~~~~~~~g~~~~~~g~~~~~~A~~~~~~al~~   62 (119)
                      +..+...|..+=..|  +|++|+.+|..+++.
T Consensus        11 A~~l~~~Av~~D~~~--~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1          11 AIDLASKAAQEDKAG--NYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHTT--CCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            555566777777777  899999999988875

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.99  E-value=2.1  Score=27.10  Aligned_cols=51  Identities=16%  Similarity=0.118  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhhc----cCCCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 033440           49 YSDAIDCYTRAINQN----VLSDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALK   99 (119)
Q Consensus        49 ~~~A~~~~~~al~~~----~~~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~   99 (119)
                      -+.|...|.+|+.+.    +..+|-...+..|.+..++ .+++.++|+..++++++
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            346788888888652    2225555566677777665 57999999999999875

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.09  E-value=1.6  Score=23.60  Aligned_cols=15  Identities=20%  Similarity=0.324  Sum_probs=8.6

Q ss_pred             cHHHHHHHHHHHHhh
Q 033440           48 HYSDAIDCYTRAINQ   62 (119)
Q Consensus        48 ~~~~A~~~~~~al~~   62 (119)
                      +...|+.+..+|++.
T Consensus        11 ~~~~A~~l~~~Av~~   25 (93)
T d1wfda_          11 DSTAAVAVLKRAVEL   25 (93)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445566666666655

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=80.20  E-value=2.4  Score=26.83  Aligned_cols=50  Identities=26%  Similarity=0.306  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhhccC------CCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Q 033440           50 SDAIDCYTRAINQNVL------SDSENSVLYANRAHVNL-LLGNYRRAFTDAEEALK   99 (119)
Q Consensus        50 ~~A~~~~~~al~~~~~------~~~~~~~~~~~~a~~~~-~l~~~~~A~~~~~~al~   99 (119)
                      +.|...|.+|+++...      .+|-...+..|.+..|+ .+++.++|+..++++++
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4577778888765211      14444566667777666 48999999999988874