Citrus Sinensis ID: 033456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Secondary Structure (PSIPRED)
ccccEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mhdfcftipyglilIGGGIVgfakkgstaslaggVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIatggnhipakae
Flexible Loop (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Low Complexity Region (SEG)
MHDFCFTIPYgliligggivgFAKKgstaslaggvgtglllvlagylslKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Disordered region (IsUnstruct)
**DFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGN*******
Disordered Region (DISOPRED)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYK*************
Disordered Region (DISEMBL)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Disordered Region (DISPRO)
*HDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHI*****
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
O64847	108	UPF0136 membrane protein	no	no	0.789	0.870	0.39	4e-08
Q5R751	112	Transmembrane protein 14C	yes	no	0.756	0.803	0.343	4e-06
Q0P436	107	Transmembrane protein 14C	yes	no	0.823	0.915	0.302	8e-06
Q9CQN6	114	Transmembrane protein 14C	yes	no	0.756	0.789	0.333	1e-05
Q9P0S9	112	Transmembrane protein 14C	yes	no	0.756	0.803	0.333	2e-05
Q924P2	115	Transmembrane protein 14C	no	no	0.756	0.782	0.323	3e-05
P56983	99	Transmembrane protein 14A	no	no	0.613	0.737	0.325	5e-05
P56982	99	Transmembrane protein 14A	yes	no	0.613	0.737	0.325	0.0002
Q9NUH8	114	Transmembrane protein 14B	no	no	0.764	0.798	0.343	0.0002
Q9Y6G1	99	Transmembrane protein 14A	no	no	0.672	0.808	0.310	0.0002

>sp|O64847|U136_ARATH UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 6   FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIE 65
           FT+ Y  +L  GG++G+ K+GS  SL  G G+  L            E   N   A  I 
Sbjct: 9   FTLAYASLLGVGGLMGYLKRGSKISLVAGGGSAALFYYV------YTELPGNPVLASSIG 62

Query: 66  TVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY 105
            V +A LT +M  RY+ T KV+PAG+V+ +S +MTG YL+
Sbjct: 63  IVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLH 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R751|TM14C_PONAB Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          +H F F   Y  ++  GGI+G+AK GS  SLA G+  G L  L  Y   +  +  +N   
Sbjct: 10 LHWFGFG--YAALVASGGIIGYAKAGSVPSLAAGLLFGSLASLGAY---QLSQDPRN--- 61

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 99
           + +    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 62 -VWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLM 99

Required for normal heme biosynthesis.

Pongo abelii (taxid: 9601)

>sp|Q0P436|TM14C_DANRE Transmembrane protein 14C OS=Danio rerio GN=tmem14c PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 10  YGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCA 69
           Y  ++  GG++G+ K GS  SLA G      LV  G     A++  ++    I +    +
Sbjct: 10  YAALVASGGVIGYVKAGSVPSLAAG------LVFGGLAGFGAYQTSQDP-GNIWVSLAAS 62

Query: 70  AVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKA 118
             L  +M +R+  + K+ PAG++AG S LM    L K+  G    P K+
Sbjct: 63  GTLAAIMGKRFYNSRKITPAGLIAGASVLM----LAKLGAGMLQKPQKS 107

Required for normal heme biosynthesis.

Danio rerio (taxid: 7955)

>sp|Q9CQN6|TM14C_MOUSE Transmembrane protein 14C OS=Mus musculus GN=Tmem14c PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +H F F   Y  ++  GGI+G+AK GS  SLA G      L   G   L A++  ++   
Sbjct: 11  LHYFGFG--YAALVATGGIIGYAKAGSVPSLAAG------LFFGGLAGLGAYQLSQDPR- 61

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 99
            + +    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 62  NVWVFLATSGTLAGIMGMRFYNSGKFMPAGLIAGASLLM 100

Required for normal heme biosynthesis.

Mus musculus (taxid: 10090)

>sp|Q9P0S9|TM14C_HUMAN Transmembrane protein 14C OS=Homo sapiens GN=TMEM14C PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 1  MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
          +H F F   Y  ++  GGI+G+ K GS  SLA G+   L   LAG  + +  +  +N + 
Sbjct: 10 LHWFGFG--YAALVASGGIIGYVKAGSVPSLAAGL---LFGSLAGLGAYQLSQDPRNVW- 63

Query: 61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 99
             +    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 64 ---VFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLM 99

Required for normal heme biosynthesis.

Homo sapiens (taxid: 9606)

>sp|Q924P2|TM14C_RAT Transmembrane protein 14C OS=Rattus norvegicus GN=Tmem14c PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +H + F   Y  ++  GGI+G+AK GS  SLA G      L   G   L A++  ++   
Sbjct: 11  LHYYGFG--YAALVATGGIIGYAKAGSVPSLAAG------LFFGGLAGLGAYQLSQDPR- 61

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 99
            + +    +  L  +M  R+  + K MPAG++AG S LM
Sbjct: 62  NVWVFLATSGTLAGIMGMRFYNSGKFMPAGLIAGASLLM 100

Required for normal heme biosynthesis.

Rattus norvegicus (taxid: 10116)

>sp|P56983|TM14A_MOUSE Transmembrane protein 14A OS=Mus musculus GN=Tmem14a PE=2 SV=2

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 17 GGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVM 76
          G ++G+ ++G   SL  G+  GLL   AGY + +    +++    + +    A  L  +M
Sbjct: 15 GSVLGYKRRGGVPSLIAGLSVGLL---AGYGAYRVSNDRRD----VKVSLFTAFFLATIM 67

Query: 77 AQRYMETSKVMPAGIVAGIS 96
            R+  + KVMPAG+VAG+S
Sbjct: 68 GVRFKRSKKVMPAGLVAGLS 87

Mus musculus (taxid: 10090)

>sp|P56982|TM14A_BOVIN Transmembrane protein 14A OS=Bos taurus GN=TMEM14A PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 17 GGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVM 76
          G I+G+ ++G   SL  G+  G L   AGY + +    K++    + +    A  L  +M
Sbjct: 15 GSILGYKRRGGVLSLIAGLFVGFL---AGYGAYRVSNDKRD----VKLSLFTAFFLATIM 67

Query: 77 AQRYMETSKVMPAGIVAGIS 96
            R+  + K+MPAG+VAG+S
Sbjct: 68 GVRFKRSKKIMPAGLVAGLS 87

Bos taurus (taxid: 9913)

>sp|Q9NUH8|TM14B_HUMAN Transmembrane protein 14B OS=Homo sapiens GN=TMEM14B PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +H F F   Y  +++ GGIVG+ K GS  SLA G+   L   LAG  + + ++  +N + 
Sbjct: 11  LHWFGFG--YTALVVSGGIVGYVKTGSVPSLAAGL---LFGSLAGLGAYQLYQDPRNVWG 65

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 99
            +   +V       VM  R     K MP G++AG S LM
Sbjct: 66  FLAATSVT---FVGVMGMRSYYYGKFMPVGLIAGASLLM 101

Homo sapiens (taxid: 9606)

>sp|Q9Y6G1|TM14A_HUMAN Transmembrane protein 14A OS=Homo sapiens GN=TMEM14A PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 10 YGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCA 69
          Y  ++  G I G+ ++G   SL  G+  G    LAGY + +    K++    + +    A
Sbjct: 8  YAALVTFGSIFGYKRRGGVPSLIAGLFVG---CLAGYGAYRVSNDKRD----VKVSLFTA 60

Query: 70 AVLTVVMAQRYMETSKVMPAGIVAGIS 96
            L  +M  R+  + K+MPAG+VAG+S
Sbjct: 61 FFLATIMGVRFKRSKKIMPAGLVAGLS 87

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
225461013	119	PREDICTED: UPF0136 membrane protein At2g	1.0	1.0	0.823	2e-51
224126437	119	predicted protein [Populus trichocarpa]	1.0	1.0	0.781	2e-48
357494405	121	hypothetical protein MTR_5g092160 [Medic	1.0	0.983	0.756	2e-47
449468492	119	PREDICTED: UPF0136 membrane protein At2g	1.0	1.0	0.756	1e-46
351723771	119	uncharacterized protein LOC100306195 [Gl	1.0	1.0	0.747	3e-46
388503384	119	unknown [Lotus japonicus]	1.0	1.0	0.739	6e-45
15232290	119	Transmembrane proteins 14C [Arabidopsis	1.0	1.0	0.747	1e-44
297830734	119	hypothetical protein ARALYDRAFT_479576 [	1.0	1.0	0.739	3e-44
18403201	119	Transmembrane proteins 14C [Arabidopsis	1.0	1.0	0.731	1e-43
297847424	119	hypothetical protein ARALYDRAFT_892015 [	1.0	1.0	0.714	6e-43

>gi|225461013|ref|XP_002280849.1| PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera] gi|297737418|emb|CBI26619.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/119 (82%), Positives = 110/119 (92%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGGIVG+AKKGS ASL GG+GTG +L+LAGYLSLKAF+KKKNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGIVGYAKKGSLASLGGGLGTGFVLILAGYLSLKAFKKKKNSYL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A+++ETVCAA LT VM QRYM+TSK+MPAGIVAGISALMT FYLYKIATGGNHIP KAE
Sbjct: 61  ALILETVCAAALTWVMGQRYMQTSKIMPAGIVAGISALMTTFYLYKIATGGNHIPTKAE 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126437|ref|XP_002319838.1| predicted protein [Populus trichocarpa] gi|118488838|gb|ABK96229.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858214|gb|EEE95761.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 106/119 (89%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+ GG++G+ KKGS ASL GG GTGL+L+ AGYLSLKAFEK+KNS+ 
Sbjct: 1   MHDFCFTIPYGLVLVIGGVIGYLKKGSMASLGGGAGTGLVLIFAGYLSLKAFEKRKNSFL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
            + IETVCAA+LT VM QRYM+TSK+MPAGIVAGISALMT FYLYKIA GGNHIPAKAE
Sbjct: 61  GLAIETVCAAILTFVMGQRYMQTSKIMPAGIVAGISALMTLFYLYKIAAGGNHIPAKAE 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494405|ref|XP_003617491.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|217071360|gb|ACJ84040.1| unknown [Medicago truncatula] gi|355518826|gb|AET00450.1| hypothetical protein MTR_5g092160 [Medicago truncatula] gi|388495030|gb|AFK35581.1| unknown [Medicago truncatula]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 106/119 (89%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG+ GF  KGSTASLAGGVGTGLLL+LAGYLSL AF K+KNSY 
Sbjct: 1   MHDFCFTIPYGLVLVGGGLFGFIHKGSTASLAGGVGTGLLLILAGYLSLNAFGKRKNSYL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A+ IE +CA VLT +M QRY++TSK+MPAG++AG+SALMT FYLYK+ATGGNHIPA A+
Sbjct: 61  ALAIEILCAGVLTWIMGQRYLQTSKIMPAGMIAGLSALMTLFYLYKLATGGNHIPATAK 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468492|ref|XP_004151955.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus] gi|449489972|ref|XP_004158473.1| PREDICTED: UPF0136 membrane protein At2g26240-like [Cucumis sativus]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 105/119 (88%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGLIL+GGGI G+ +KGS  SLAGGVGTGL L+LAGYLSL AF+KKKNSY 
Sbjct: 1   MHDFCFTIPYGLILVGGGIFGYLRKGSIVSLAGGVGTGLALILAGYLSLGAFKKKKNSYL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A+++ETVC+  LT VM QRY++TSK+MPAG+VAGIS+LMT FYLYK+ATGGNHI  KAE
Sbjct: 61  ALILETVCSGALTWVMGQRYLQTSKIMPAGVVAGISSLMTLFYLYKLATGGNHISPKAE 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723771|ref|NP_001235243.1| uncharacterized protein LOC100306195 [Glycine max] gi|255627833|gb|ACU14261.1| unknown [Glycine max]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 105/119 (88%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG+  +  KGS ASLAGGVG+GLLL++AGYLSL AF K+KNSY 
Sbjct: 1   MHDFCFTIPYGLMLVGGGLFAYISKGSIASLAGGVGSGLLLIVAGYLSLNAFGKRKNSYL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A+ +ETVCAA+LT VM QRY+ TSK+MPAG+VAGISALMT FYLYK+ATGGNH+P KAE
Sbjct: 61  ALFLETVCAAILTWVMGQRYLGTSKIMPAGLVAGISALMTLFYLYKLATGGNHLPTKAE 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503384|gb|AFK39758.1| unknown [Lotus japonicus]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 102/119 (85%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYGL+L+GGG  G+  KGS  SL GGV +GLLL++AGY+SL AF K+KNSYF
Sbjct: 1   MHDFCFTIPYGLLLVGGGAFGYIHKGSIPSLLGGVVSGLLLIVAGYISLNAFGKRKNSYF 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A+ +ETVCA  LT VM QRYMETSKVMPAG+VAGIS LMT FYLYK+ATGGNH+PAKA+
Sbjct: 61  ALFLETVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKLATGGNHLPAKAD 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232290|ref|NP_188687.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|11994139|dbj|BAB01160.1| unnamed protein product [Arabidopsis thaliana] gi|34365633|gb|AAQ65128.1| At3g20510 [Arabidopsis thaliana] gi|51971331|dbj|BAD44330.1| unknown protein [Arabidopsis thaliana] gi|51971899|dbj|BAD44614.1| unknown protein [Arabidopsis thaliana] gi|332642868|gb|AEE76389.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 103/119 (86%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LIGGG +G+ KKGS  S AGG GTGLLL+LAGY+SLKAFEKKKNS  
Sbjct: 1   MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A+V++TV AA LT+VM QRY+ T K+MPAG+VAGISALMT FY+YKIATGGN  PAKAE
Sbjct: 61  AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKAE 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830734|ref|XP_002883249.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata] gi|297329089|gb|EFH59508.1| hypothetical protein ARALYDRAFT_479576 [Arabidopsis lyrata subsp. lyrata]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/119 (73%), Positives = 103/119 (86%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCF+IPYG++LIGGG +G+ KKGS  S AGG GTGLLL+LAGY+SLKAFEKKKNS  
Sbjct: 1   MHDFCFSIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSSI 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A+V++TV AA LT+VM QRY+ T K+MPAG+VAGISALMT FY+YKIATGGN  PAKAE
Sbjct: 61  AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKAE 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403201|ref|NP_564579.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|12321434|gb|AAG50780.1|AC079027_3 unknown protein [Arabidopsis thaliana] gi|18491153|gb|AAL69479.1| unknown protein [Arabidopsis thaliana] gi|20466055|gb|AAM20362.1| unknown protein [Arabidopsis thaliana] gi|21592962|gb|AAM64911.1| unknown [Arabidopsis thaliana] gi|332194465|gb|AEE32586.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 102/119 (85%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+VLAG++SLKAFEKKK S  
Sbjct: 1   MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A ++ETV AA LT VM QR+++T K+MPA +VAGISALMT FY+YKIATGGNHIP KAE
Sbjct: 61  ATLLETVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGNHIPPKAE 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847424|ref|XP_002891593.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata] gi|297337435|gb|EFH67852.1| hypothetical protein ARALYDRAFT_892015 [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (450), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 103/119 (86%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           MHDFCFTIPYG++LI GG +G+ KKGS ASLAGG GTGLL+VLAG++SLKAFEKKK S  
Sbjct: 1   MHDFCFTIPYGMLLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSSL 60

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
           A +++TV AA LT VM QR+++T K++PAG+VAGISALMT FY++KIATGGNHIP KAE
Sbjct: 61  ATLLQTVIAAALTFVMGQRFLQTQKIIPAGLVAGISALMTCFYVFKIATGGNHIPPKAE 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
TAIR|locus:2085780	119	AT3G20510 [Arabidopsis thalian	1.0	1.0	0.537	1e-27
TAIR|locus:2033177	119	AT1G50740 "AT1G50740" [Arabido	1.0	1.0	0.521	4.5e-27
TAIR|locus:2082578	226	AT3G57280 "AT3G57280" [Arabido	0.983	0.517	0.307	2.7e-09
TAIR|locus:2057721	108	AT2G26240 [Arabidopsis thalian	0.411	0.453	0.469	4.3e-06
TAIR|locus:2098189	240	AT3G43520 "AT3G43520" [Arabido	0.394	0.195	0.425	9.8e-05
UNIPROTKB|F1NWB5	117	TMEM14C "Uncharacterized prote	0.319	0.324	0.447	0.0001
ZFIN|ZDB-GENE-070410-137	99	zgc:163080 "zgc:163080" [Danio	0.302	0.363	0.5	0.00021

TAIR|locus:2085780 AT3G20510 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 64/119 (53%), Positives = 73/119 (61%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                        KAFEKKKNS  
Sbjct:     1 MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query:    61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
             A+V++TV AA LT+VM QRY+ T K+MPAG+VAGISALMT FY+YKIATGGN  PAKAE
Sbjct:    61 AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKAE 119

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2033177 AT1G50740 "AT1G50740" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/119 (52%), Positives = 71/119 (59%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             MHDFCFTIPY           + KK                        KAFEKKK S  
Sbjct:     1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query:    61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAKAE 119
             A ++ETV AA LT VM QR+++T K+MPA +VAGISALMT FY+YKIATGGNHIP KAE
Sbjct:    61 ATLLETVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGNHIPPKAE 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2082578 AT3G57280 "AT3G57280" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 36/117 (30%), Positives = 49/117 (41%)

Query:     1 MHDFCFTIPYXXXXXXXXXXXFAKKXXXXXXXXXXXXXXXXXXXXXXXXKAFEKKKNSYF 60
             +HDFCF IPY           FA                          K + + K+S+ 
Sbjct:   100 IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYGGGLLALSTLSLKIWREGKSSFP 159

Query:    61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIPAK 117
              I+ + V +AV+       Y  T K+ PAG+ A ISA M  FY Y + +GGN  P K
Sbjct:   160 YILGQAVLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSYVVLSGGNPPPKK 216

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2057721 AT2G26240 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query:    57 NSYFAIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY 105
             N   A  I  V +A LT +M  RY+ T KV+PAG+V+ +S +MTG YL+
Sbjct:    54 NPVLASSIGIVGSAALTGMMGSRYLRTRKVVPAGLVSVVSLVMTGAYLH 102

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2098189 AT3G43520 "AT3G43520" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query:    61 AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 107
             A  +  V A  L  VM  RYM + K+ PAG+V+ +S +MTG Y++ I
Sbjct:   189 ASTVGVVMAGALMYVMGTRYMRSKKIFPAGVVSIMSFIMTGGYIHGI 235

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|F1NWB5 TMEM14C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query:    64 IETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTG 101
             I  + +  LT VM  R+  + K MPAG++AG+S LM G
Sbjct:    67 ISLITSGTLTAVMGTRFYNSGKFMPAGLIAGVSLLMVG 104

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-070410-137 zgc:163080 "zgc:163080" [Danio rerio (taxid:7955)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query:    64 IETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALM 99
             I  + A VL  VM  R+ ++ K+MPAGI+AG+S LM
Sbjct:    57 ISLLSAGVLAAVMGMRFRKSGKLMPAGIMAGLSLLM 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119        84   0.00091  102 3  11 22  0.50    28
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  513 (55 KB)
  Total size of DFA:  93 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.71u 0.08s 8.79t   Elapsed:  00:00:11
  Total cpu time:  8.71u 0.08s 8.79t   Elapsed:  00:00:11
  Start:  Thu May  9 14:01:15 2013   End:  Thu May  9 14:01:26 2013

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0P436	TM14C_DANRE	No assigned EC number	0.3027	0.8235	0.9158	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027345001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (119 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	119
pfam03647	96	pfam03647, Tmemb_14, Transmembrane proteins 14C	5e-23
COG5548	105	COG5548, COG5548, Small integral membrane protein	1e-07

>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C

 Score = 85.3 bits (212), Expect = 5e-23
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 4   FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIV 63
               I Y  ++  GGI+G+AK GS  SL  G+  G LL    YL        +N  + + 
Sbjct: 1   DHPGIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLL------SQNQPYGLE 54

Query: 64  IETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLY 105
           +  + +AVL  VM  RY++T K MPAG+V G+SA M  FY Y
Sbjct: 55  LALLASAVLAGVMGPRYIKTRKFMPAGLVLGLSAAMLAFYYY 96

This family of short membrane proteins are as yet uncharacterized. Length = 96

>gnl|CDD|227835 COG5548, COG5548, Small integral membrane protein [Function unknown]

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 8  IPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETV 67
          I   ++   GG++G+ +K S  SL  GV +GLLL +A YL L      +   + +++ TV
Sbjct: 8  IALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQL------QGQTWGLILATV 61

Query: 68 CAAVLTVVMAQRYMETSKVMPAGIVA 93
           +A L V  A R + + K +PAG+  
Sbjct: 62 VSAALLVFFALRLVRSRKPVPAGLTT 87

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG4267	110	consensus Predicted membrane protein [Function unk	100.0
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.96
COG5548	105	Small integral membrane protein [Function unknown]	99.86

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.5e-35  Score=208.68  Aligned_cols=108  Identities=51%  Similarity=0.794  Sum_probs=99.0

Q ss_pred             CccccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcC-chhHHHHHHHH-HHHHHHHHHHH
Q 033456            1 MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKK-NSYFAIVIETV-CAAVLTVVMAQ   78 (119)
Q Consensus         1 ~~Dfcl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~-~~~~~~~~~l~-~S~~L~~~m~~   78 (119)
                      |||+|++++|+.|+++||+|||.|+||+|||++|+.+|++   ++|.+++.|+|++ +..    +++. +|++|+.+|+.
T Consensus         1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~----~~l~~~s~~L~gvmg~   73 (110)
T KOG4267|consen    1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSL----VALGGTSAALLGVMGQ   73 (110)
T ss_pred             CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCch----hHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999975   5677777888766 544    4455 79999999999


Q ss_pred             HHHhhCCcchHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 033456           79 RYMETSKVMPAGIVAGISALMTGFYLYKIATGGNHIP  115 (119)
Q Consensus        79 R~~~t~K~mPaGl~~~ls~~~~~~y~~~~~~~~~~~~  115 (119)
                      ||.+|||+||+|+++.+|++|++||.|+..++.||+|
T Consensus        74 R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~  110 (110)
T KOG4267|consen   74 RFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP  110 (110)
T ss_pred             hhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999987

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.96  E-value=1.2e-30  Score=180.25  Aligned_cols=96  Identities=50%  Similarity=0.825  Sum_probs=86.5

Q ss_pred             ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033456            4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET   83 (119)
Q Consensus         4 fcl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t   83 (119)
                      ||++++|++++.+||++||+|+||+|||++|+++|++++.+++++.      +|+++++.+++.+|.+|+.+|++|+.||
T Consensus         1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~------~~~~~~~~~~l~~s~~L~~~m~~R~~~t   74 (96)
T PF03647_consen    1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL------TNQKWGSELALAISAVLAGVMGYRYIKT   74 (96)
T ss_dssp             HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS-------STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred             CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh------ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence            7999999999999999999999999999999999999999998864      3566778899999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHH
Q 033456           84 SKVMPAGIVAGISALMTGFYLY  105 (119)
Q Consensus        84 ~K~mPaGl~~~ls~~~~~~y~~  105 (119)
                      +|+||+|+++++|++|+.+|.|
T Consensus        75 ~k~~Pagl~~~~s~~~~~~y~Y   96 (96)
T PF03647_consen   75 RKFMPAGLMALLSGAMLAFYYY   96 (96)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHC-
T ss_pred             CCCccHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999976

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=99.86  E-value=3e-22  Score=138.38  Aligned_cols=92  Identities=34%  Similarity=0.539  Sum_probs=82.0

Q ss_pred             chHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 033456            6 FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETSK   85 (119)
Q Consensus         6 l~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~K   85 (119)
                      -.+.++.|..+||+|||.||+|++||++|+.+|+.+.+++|+..|      ++++++..++..|++|..+++.|+.||||
T Consensus         6 ~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~------g~~~Gl~~A~~~s~~Ll~~~~~R~~~sRK   79 (105)
T COG5548           6 AAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQ------GQTWGLILATVVSAALLVFFALRLVRSRK   79 (105)
T ss_pred             HHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHc------CcccCeehHHHHHHHHHHhcchhccccCC
Confidence            468899999999999999999999999999999999999999765      55688889999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHH
Q 033456           86 VMPAGIVAGISALMTGFY  103 (119)
Q Consensus        86 ~mPaGl~~~ls~~~~~~y  103 (119)
                      ++|++++++.+....-+|
T Consensus        80 pvP~~Lt~lgg~~s~y~y   97 (105)
T COG5548          80 PVPAGLTTLGGMLSLYVY   97 (105)
T ss_pred             CcchHHHHHhhhhhhhhe
Confidence            999988877665554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	7e-18
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	5e-16

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens} Length = 121

 Score = 72.4 bits (177), Expect = 7e-18
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 1   MHDFCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYF 60
           +    F   Y  ++  GGI+G+ K GS  SLA G+  G L  L  Y              
Sbjct: 17  VPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQL-------SQDPR 69

Query: 61  AIVIETVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 107
            + +    +  L  +M  R+  + K MPAG++AG S LM       +
Sbjct: 70  NVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSM 116

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A Length = 108

 Score = 67.4 bits (164), Expect = 5e-16
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 6   FTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIE 65
               Y  ++  G I G+ ++G   SL  G+  G L     Y          N    + + 
Sbjct: 13  IGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRV-------SNDKRDVKVS 65

Query: 66  TVCAAVLTVVMAQRYMETSKVMPAGIVAGISALMTGFYLYKI 107
              A  L  +M  R+  + K+MPAG+VAG+S +M    +  +
Sbjct: 66  LFTAFFLATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLL 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.92
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.92

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.92  E-value=9.3e-31  Score=183.75  Aligned_cols=97  Identities=26%  Similarity=0.438  Sum_probs=87.6

Q ss_pred             cchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033456            5 CFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMETS   84 (119)
Q Consensus         5 cl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t~   84 (119)
                      +++++|++++++||++||+|+||+|||++|+.+|+++..   .+++.|+|++    ++++++++|++|+.+|++||.|||
T Consensus        12 ~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~---~~~~~~~~~~----~~~l~l~~S~~L~~~m~~R~~~t~   84 (108)
T 2loo_A           12 LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGY---GAYRVSNDKR----DVKVSLFTAFFLATIMGVRFKRSK   84 (108)
Confidence            489999999999999999999999999999999997644   4455565542    788999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHh
Q 033456           85 KVMPAGIVAGISALMTGFYLYKIA  108 (119)
Q Consensus        85 K~mPaGl~~~ls~~~~~~y~~~~~  108 (119)
                      |+||+|+++++|++|++||.|+++
T Consensus        85 K~mPaGl~a~lS~~m~~~y~~~l~  108 (108)
T 2loo_A           85 KIMPAGLVAGLSLMMILRLVLLLL  108 (108)
Confidence            999999999999999999999874

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.92  E-value=2e-30  Score=185.20  Aligned_cols=101  Identities=30%  Similarity=0.467  Sum_probs=89.4

Q ss_pred             ccchHHHHHHHHhhhhhHhhhcCChhHhHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033456            4 FCFTIPYGLILIGGGIVGFAKKGSTASLAGGVGTGLLLVLAGYLSLKAFEKKKNSYFAIVIETVCAAVLTVVMAQRYMET   83 (119)
Q Consensus         4 fcl~~~ya~ll~~GGi~Gy~k~gS~~SLiaG~~~G~ll~~ag~~~~~~~~~~~~~~~~~~~~l~~S~~L~~~m~~R~~~t   83 (119)
                      -.++++|++++++||++||+|+||+|||+||+.+|+++..++   +|.|+|+++    .++++++|++|+.+|+.||.||
T Consensus        20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a---~~~~~~~~~----~~l~l~~S~~L~~~mg~R~~~t   92 (121)
T 2los_A           20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGA---YQLSQDPRN----VWVFLATSGTLAGIMGMRFYHS   92 (121)
Confidence            358999999999999999999999999999999999765544   456666543    3578899999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 033456           84 SKVMPAGIVAGISALMTGFYLYKIATGG  111 (119)
Q Consensus        84 ~K~mPaGl~~~ls~~~~~~y~~~~~~~~  111 (119)
                      +|+||+|+++++|++|++||.+++++.+
T Consensus        93 ~K~mPaGlva~lS~~m~~~~~~~ll~~~  120 (121)
T 2los_A           93 GKFMPAGLIAGASLLMVAKVGVSMFNRP  120 (121)
Confidence            9999999999999999999999998744

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00