Citrus Sinensis ID: 033475

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLASG
Secondary Structure (PSIPRED)
ccccccccEEEEEHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEccccccccccEEEEEEEcccccccccccEEEEcccccccccccccEEEEcccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHccccccEEEEEcccccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEcEccccccEcccccEEccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mtlgsggssvvvprnFRLLEELergekgigdgtvsygmddgddiymrswtgtiigphntvhegRIYQLKLfcdkdypekppsvrfhsrinmtcvnheTGVVLFLFDLNSVHLVFLASG
Flexible Loop (DISEMBL)
mtlgsggssvvvprNFRLLeelergekgigdgtvsygMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLASG
Low Complexity Region (SEG)
MTLGSGGSSVVVPRNFRlleeleRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLASG
Disordered region (IsUnstruct)
*************RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFL***
Disordered Region (DISOPRED)
****************RLL**L***********VSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLA**
Disordered Region (DISEMBL)
********SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLASG
Disordered Region (DISPRO)
*********VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLAS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLFDLNSVHLVFLASG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9SVD7	146	Ubiquitin-conjugating enz	yes	no	0.855	0.691	0.970	3e-54
Q9SJ44	145	Ubiquitin-conjugating enz	no	no	0.847	0.689	0.970	9e-53
Q9CAB6	159	Ubiquitin-conjugating enz	no	no	0.838	0.622	0.797	3e-43
Q93YP0	158	Ubiquitin-conjugating enz	no	no	0.838	0.626	0.777	7e-43
Q54D06	138	Probable ubiquitin-conjug	yes	no	0.779	0.666	0.630	9e-32
Q9CZY3	147	Ubiquitin-conjugating enz	yes	no	0.830	0.666	0.591	7e-30
Q13404	147	Ubiquitin-conjugating enz	no	no	0.830	0.666	0.591	3e-29
Q3SZ52	147	Ubiquitin-conjugating enz	yes	no	0.830	0.666	0.591	3e-29
Q5F3Z3	144	Ubiquitin-conjugating enz	yes	no	0.813	0.666	0.583	4e-29
Q90879	145	Ubiquitin-conjugating enz	no	no	0.822	0.668	0.577	2e-28

>sp|Q9SVD7|UEV1D_ARATH Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1

 Score =  209 bits (533), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 100/101 (99%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM CVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVV 101

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. Involved in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ44|UEV1C_ARATH Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1

 Score =  205 bits (521), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 98/101 (97%), Positives = 100/101 (99%), Gaps = 1/101 (0%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSG SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSG-SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 59

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCVNH+TGVV
Sbjct: 60  HEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVV 100

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. May play a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAB6|UEV1B_ARATH Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1

 Score =  173 bits (439), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/99 (79%), Positives = 86/99 (86%)

Query: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
           +GS    VVVPRNFRLLEELERGEKGIGDGTVSYGMDD DDI M+SWTGTI+GPHNT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 63  GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           G+I+QLKLFC KDYPE PP+VRF SRINM CVN E GVV
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVV 99

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. May play a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP0|UEV1A_ARATH Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1

 Score =  172 bits (435), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/99 (77%), Positives = 87/99 (87%)

Query: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
           + S  + VVVPRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +E
Sbjct: 1   MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYE 60

Query: 63  GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           G+I+QLKLFC K+YPE PP+VRF +RINM CVN ETGVV
Sbjct: 61  GKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVV 99

Has no ubiquitin ligase activity on its own. The heterodimer with UBC catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. May play a role in the control of progress through the cell cycle and differentiation. Probably not involved in the error-free DNA repair.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54D06|UBE2V_DICDI Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 70/92 (76%)

Query: 10  VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 69
             +PRNF LLEELE GEK  GDGT+SYG++  DDI + SW GTIIGP NT  + R Y LK
Sbjct: 2   TTIPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLK 61

Query: 70  LFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           L+CDKDYP KPP+VRF ++IN+ CVN + GVV
Sbjct: 62  LYCDKDYPNKPPTVRFTTKINIGCVNQQNGVV 93

Has no ubiquitin ligase activity on its own. The ube2v/ube2n heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9CZY3|UB2V1_MOUSE Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 74/98 (75%)

Query: 4   GSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEG 63
            + GS V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E 
Sbjct: 3   ATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYEN 62

Query: 64  RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           RIY LK+ C   YPE PPSVRF +R+NM+ V+   GVV
Sbjct: 63  RIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVV 100

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation (By similarity). Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Mus musculus (taxid: 10090)

>sp|Q13404|UB2V1_HUMAN Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 72/98 (73%)

Query: 4   GSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEG 63
            + GS V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E 
Sbjct: 3   ATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYEN 62

Query: 64  RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           RIY LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct: 63  RIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through Lys-63. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q3SZ52|UB2V1_BOVIN Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 72/98 (73%)

Query: 4   GSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEG 63
            + GS V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E 
Sbjct: 3   ATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYEN 62

Query: 64  RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           RIY LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct: 63  RIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Bos taurus (taxid: 9913)

>sp|Q5F3Z3|UB2V2_CHICK Ubiquitin-conjugating enzyme E2 variant 2 OS=Gallus gallus GN=UBE2V2 PE=2 SV=1

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 73/96 (76%)

Query: 6   GGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI 65
            GS+V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T +E RI
Sbjct: 2   AGSTVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRI 61

Query: 66  YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           Y LK+ C   YPE PP+VRF ++INM  +N+  G+V
Sbjct: 62  YSLKVECGPKYPEAPPTVRFVTKINMNGINNSNGMV 97

Has no ubiquitin ligase activity on its own. The UBE2V2/UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Gallus gallus (taxid: 9031)

>sp|Q90879|UB2V1_CHICK Ubiquitin-conjugating enzyme E2 variant 1 OS=Gallus gallus GN=UBE2V1 PE=2 SV=2

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 71/97 (73%)

Query: 5   SGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR 64
           +  + V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E R
Sbjct: 2   AATTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENR 61

Query: 65  IYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           IY LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct: 62  IYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 98

Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through 'Lys-63'. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
356498731	215	PREDICTED: ubiquitin-conjugating enzyme	0.855	0.469	1.0	9e-54
359481634	146	PREDICTED: ubiquitin-conjugating enzyme	0.855	0.691	1.0	9e-54
388502304	146	unknown [Lotus japonicus]	0.855	0.691	1.0	9e-54
315937232	146	ubiquitin-conjugating family protein [Ja	0.855	0.691	1.0	1e-53
257196367	146	ubiquitin-conjugating enzyme variant [Ci	0.855	0.691	1.0	1e-53
449437446	146	PREDICTED: ubiquitin-conjugating enzyme	0.855	0.691	0.990	1e-53
297827083	146	hypothetical protein ARALYDRAFT_482581 [	0.855	0.691	0.990	1e-53
224091917	146	predicted protein [Populus trichocarpa]	0.855	0.691	0.990	2e-53
217069822	148	unknown [Medicago truncatula]	0.855	0.682	0.990	2e-53
217075773	146	unknown [Medicago truncatula] gi|3884967	0.855	0.691	0.990	3e-53

>gi|356498731|ref|XP_003518203.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like [Glycine max]

 Score =  213 bits (543), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481634|ref|XP_003632650.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like isoform 2 [Vitis vinifera] gi|297740182|emb|CBI30364.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (543), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502304|gb|AFK39218.1| unknown [Lotus japonicus]

 Score =  213 bits (543), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315937232|gb|ADU56174.1| ubiquitin-conjugating family protein [Jatropha curcas] gi|317159571|gb|ADV04060.1| protein binding/ubiquitin-protein ligase 1 [Hevea brasiliensis]

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257196367|gb|ACV49920.1| ubiquitin-conjugating enzyme variant [Citrus sinensis]

 Score =  213 bits (542), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437446|ref|XP_004136503.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1C-like [Cucumis sativus] gi|449526672|ref|XP_004170337.1| PREDICTED: ubiquitin-conjugating enzyme E2 variant 1C-like [Cucumis sativus]

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSR+NMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVV 101

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827083|ref|XP_002881424.1| hypothetical protein ARALYDRAFT_482581 [Arabidopsis lyrata subsp. lyrata] gi|297327263|gb|EFH57683.1| hypothetical protein ARALYDRAFT_482581 [Arabidopsis lyrata subsp. lyrata]

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHETGVV 101

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091917|ref|XP_002309399.1| predicted protein [Populus trichocarpa] gi|118484540|gb|ABK94144.1| unknown [Populus trichocarpa] gi|222855375|gb|EEE92922.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 101/101 (100%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGT+IGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217069822|gb|ACJ83271.1| unknown [Medicago truncatula]

 Score =  212 bits (539), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 100/101 (99%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGS GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075773|gb|ACJ86246.1| unknown [Medicago truncatula] gi|388496758|gb|AFK36445.1| unknown [Medicago truncatula] gi|388520687|gb|AFK48405.1| unknown [Medicago truncatula]

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 100/101 (99%)

Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGS GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2033561	159	MMZ2 "AT1G70660" [Arabidopsis	0.838	0.622	0.737	3.9e-37
TAIR|locus:2028085	158	MMZ1 "AT1G23260" [Arabidopsis	0.838	0.626	0.717	3.5e-36
DICTYBASE|DDB_G0292596	138	ube2v "putative ubiquitin-conj	0.762	0.652	0.577	2.5e-26
MGI|MGI:1913839	147	Ube2v1 "ubiquitin-conjugating	0.805	0.646	0.547	4.6e-25
UNIPROTKB|Q3SZ52	147	UBE2V1 "Ubiquitin-conjugating	0.805	0.646	0.547	1.2e-24
UNIPROTKB|E2R2I5	147	UBE2V1 "Uncharacterized protei	0.805	0.646	0.547	1.2e-24
UNIPROTKB|Q13404	147	UBE2V1 "Ubiquitin-conjugating	0.805	0.646	0.547	1.2e-24
UNIPROTKB|I3LFW6	147	UBE2V1 "Uncharacterized protei	0.805	0.646	0.547	1.2e-24
UNIPROTKB|E1C2Z4	147	UBE2V1 "Ubiquitin-conjugating	0.805	0.646	0.536	2.6e-24
UNIPROTKB|F1LYY6	162	Tmem189 "Protein Tmem189" [Rat	0.805	0.586	0.526	3.3e-24

TAIR|locus:2033561 MMZ2 "AT1G70660" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 73/99 (73%), Positives = 80/99 (80%)

Query:     3 LGSGGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
             +GS    VVVPRNFR      RGEKGIGDGTVSYGMDD DDI M+SWTGTI+GPHNT +E
Sbjct:     1 MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query:    63 GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
             G+I+QLKLFC KDYPE PP+VRF SRINM CVN E GVV
Sbjct:    61 GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVV 99

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006301 "postreplication repair" evidence=IGI;RCA

GO:0031372 "UBC13-MMS2 complex" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2028085 MMZ1 "AT1G23260" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 71/99 (71%), Positives = 81/99 (81%)

Query:     3 LGSGGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
             + S  + VVVPRNFR      RGEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +E
Sbjct:     1 MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYE 60

Query:    63 GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
             G+I+QLKLFC K+YPE PP+VRF +RINM CVN ETGVV
Sbjct:    61 GKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVV 99

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006301 "postreplication repair" evidence=IGI;RCA

GO:0031372 "UBC13-MMS2 complex" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA

DICTYBASE|DDB_G0292596 ube2v "putative ubiquitin-conjugating enzyme E2" [Dictyostelium discoideum (taxid:44689)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 52/90 (57%), Positives = 64/90 (71%)

Query:    12 VPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
             +PRNF        GEK  GDGT+SYG++  DDI + SW GTIIGP NT  + R Y LKL+
Sbjct:     4 IPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLY 63

Query:    72 CDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
             CDKDYP KPP+VRF ++IN+ CVN + GVV
Sbjct:    64 CDKDYPNKPPTVRFTTKINIGCVNQQNGVV 93

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1913839 Ube2v1 "ubiquitin-conjugating enzyme E2 variant 1" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 52/95 (54%), Positives = 67/95 (70%)

Query:     7 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
             GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY
Sbjct:     6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 65

Query:    67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              LK+ C   YPE PPSVRF +R+NM+ V+   GVV
Sbjct:    66 SLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVV 100

GO:0000151 "ubiquitin ligase complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=ISO

GO:0035370 "UBC13-UEV1A complex" evidence=ISO

GO:0042275 "error-free postreplication DNA repair" evidence=IGI

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0070534 "protein K63-linked ubiquitination" evidence=ISO

UNIPROTKB|Q3SZ52 UBE2V1 "Ubiquitin-conjugating enzyme E2 variant 1" [Bos taurus (taxid:9913)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 52/95 (54%), Positives = 65/95 (68%)

Query:     7 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
             GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY
Sbjct:     6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 65

Query:    67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct:    66 SLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

GO:0035370 "UBC13-UEV1A complex" evidence=ISS

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|E2R2I5 UBE2V1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 52/95 (54%), Positives = 65/95 (68%)

Query:     7 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
             GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY
Sbjct:     6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 65

Query:    67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct:    66 SLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q13404 UBE2V1 "Ubiquitin-conjugating enzyme E2 variant 1" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 52/95 (54%), Positives = 65/95 (68%)

Query:     7 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
             GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY
Sbjct:     6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 65

Query:    67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct:    66 SLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0030154 "cell differentiation" evidence=NAS

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

GO:0035370 "UBC13-UEV1A complex" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0006282 "regulation of DNA repair" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0031371 "ubiquitin conjugating enzyme complex" evidence=IDA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IMP;TAS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0002224 "toll-like receptor signaling pathway" evidence=TAS

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0034130 "toll-like receptor 1 signaling pathway" evidence=TAS

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=TAS

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0050852 "T cell receptor signaling pathway" evidence=TAS

GO:0070423 "nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

UNIPROTKB|I3LFW6 UBE2V1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 52/95 (54%), Positives = 65/95 (68%)

Query:     7 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
             GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY
Sbjct:     6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 65

Query:    67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct:    66 SLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|E1C2Z4 UBE2V1 "Ubiquitin-conjugating enzyme E2 variant 1" [Gallus gallus (taxid:9031)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 51/95 (53%), Positives = 65/95 (68%)

Query:     7 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
             G+ V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY
Sbjct:     6 GAGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 65

Query:    67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct:    66 SLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 100

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F1LYY6 Tmem189 "Protein Tmem189" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 50/95 (52%), Positives = 66/95 (69%)

Query:     7 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
             G  + VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY
Sbjct:    21 GRVIKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 80

Query:    67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              LK+ C   YPE PPSVRF +R+NM+ V+   GVV
Sbjct:    81 SLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVV 115

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74983	MMS2_SCHPO	No assigned EC number	0.5777	0.7627	0.6474	yes	no
Q54D06	UBE2V_DICDI	No assigned EC number	0.6304	0.7796	0.6666	yes	no
Q9CZY3	UB2V1_MOUSE	No assigned EC number	0.5918	0.8305	0.6666	yes	no
Q5F3Z3	UB2V2_CHICK	No assigned EC number	0.5833	0.8135	0.6666	yes	no
Q3SZ52	UB2V1_BOVIN	No assigned EC number	0.5918	0.8305	0.6666	yes	no
P53152	MMS2_YEAST	No assigned EC number	0.5888	0.7627	0.6569	yes	no
Q9SJ44	UEV1C_ARATH	No assigned EC number	0.9702	0.8474	0.6896	no	no
Q6PEH5	UB2V2_DANRE	No assigned EC number	0.5567	0.8220	0.6689	yes	no
Q9SVD7	UEV1D_ARATH	No assigned EC number	0.9702	0.8559	0.6917	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__1641__AT2G36060.2 annotation not avaliable (146 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	3e-21
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	6e-21
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	7e-11
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	3e-10
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	8e-08
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	2e-06

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 82.3 bits (204), Expect = 3e-21
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 4/85 (4%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           RLL+EL+   K    G  +Y +DD +   +  WTGTI+GP  T +EG +++L +   +DY
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDEN---LLEWTGTIVGPPGTPYEGGVFKLTIEFPEDY 57

Query: 77  PEKPPSVRFHSRINMTCVNHETGVV 101
           P KPP V+F ++I    V+  +G +
Sbjct: 58  PFKPPKVKFITKIYHPNVD-SSGEI 81

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 81.5 bits (202), Expect = 6e-21
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 4/89 (4%)

Query: 13  PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFC 72
               RLL+EL++ +K    G +S G  D D+++   W  TI GP +T +EG I++L L  
Sbjct: 5   SALKRLLKELKKLQKDPPPG-ISAGPVDDDNLF--HWEATITGPPDTPYEGGIFKLTLEF 61

Query: 73  DKDYPEKPPSVRFHSRINMTCVNHETGVV 101
            +DYP KPP VRF ++I    V+  +G V
Sbjct: 62  PEDYPFKPPKVRFTTKIFHPNVD-PSGNV 89

Length = 153

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 55.3 bits (134), Expect = 7e-11
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 40 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
            +++    W GTI GP +T +EG I++L +   +DYP KPP VRF ++I
Sbjct: 24 VEENLLE--WHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKI 71

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 12/77 (15%)

Query: 17 RLLEELERGEK----GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFC 72
          RL +EL+   K    GI    V       D+++   W  TIIGP  T +EG +++L +  
Sbjct: 1  RLQKELKELLKDPPPGISAFPVD------DNLFE--WEVTIIGPEGTPYEGGVFKLDIEF 52

Query: 73 DKDYPEKPPSVRFHSRI 89
           +DYP KPP V+F ++I
Sbjct: 53 PEDYPFKPPKVKFTTKI 69

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 47.4 bits (112), Expect = 8e-08
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
            ++++   WT +IIGP ++ + G ++ L +    DYP KPP V+F ++I    +N    +
Sbjct: 27  DENLF--RWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSI 84

Query: 101 VL 102
            L
Sbjct: 85  CL 86

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 53 IIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          + GP  T +EG  Y+L+LF  + YP +PP VRF ++I
Sbjct: 38 MEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKI 74

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.97
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.97
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.96
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.96
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.94
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.91
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.89
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.79
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.65
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.52
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.43
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.42
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.23
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	96.58
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	96.52
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.24
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	96.03
KOG3357	167	consensus Uncharacterized conserved protein [Funct	95.33
smart00591	107	RWD domain in RING finger and WD repeat containing	94.78
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	92.51
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	84.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.99

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-39  Score=224.49  Aligned_cols=100  Identities=36%  Similarity=0.503  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      +.+||++|++++++++++++ .+.+.+++|  +++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+|||||
T Consensus         6 a~~RL~kE~~~l~~~~~~~~-~a~p~~d~~--l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN   82 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPGI-SAGPVDDDN--LFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN   82 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCce-EEEECCCCc--ceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence            78999999999999998885 555555557  669999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCCCCCcccEEecc
Q 033475           94 VNHETGVVL-FLFDLNSVHLVFLAS  117 (118)
Q Consensus        94 V~~~~g~~c-~~L~~~w~~~~~~~~  117 (118)
                      || .+|.|| +||+++|+|++++.|
T Consensus        83 V~-~~G~vCLdIL~~~WsP~~~l~s  106 (153)
T COG5078          83 VD-PSGNVCLDILKDRWSPVYTLET  106 (153)
T ss_pred             cC-CCCCChhHHHhCCCCccccHHH
Confidence            99 578777 999999999998754

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-39  Score=221.34  Aligned_cols=98  Identities=28%  Similarity=0.499  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      .+||.||++++++++++|+ ... ++++|  +++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus         3 ~~RI~kE~~~l~~dp~~~~-~~~-~~~dn--l~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI   78 (148)
T KOG0417|consen    3 SKRIIKELQDLLRDPPPGC-SAG-PVGDN--LFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI   78 (148)
T ss_pred             HHHHHHHHHHHhcCCCCCC-ccC-CCCCc--eeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence            4599999999999999994 544 56778  5699999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCCCCcccEEecc
Q 033475           95 NHETGVVL-FLFDLNSVHLVFLAS  117 (118)
Q Consensus        95 ~~~~g~~c-~~L~~~w~~~~~~~~  117 (118)
                      + +.|.+| |||++.|+|+++|.+
T Consensus        79 ~-~~G~IclDILk~~WsPAl~i~~  101 (148)
T KOG0417|consen   79 D-SNGRICLDILKDQWSPALTISK  101 (148)
T ss_pred             C-ccccchHHhhhccCChhhHHHH
Confidence            9 688888 999999999998753

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-36  Score=200.41  Aligned_cols=103  Identities=26%  Similarity=0.467  Sum_probs=92.2

Q ss_pred             ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      ++.++.|||++++++++++++.|+.+ . +.++|  ++.|.++|+||++|||+||+|++.++|+++||.+||.|+|.+++
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa-~-P~~~n--iM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~m   76 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISA-A-PVENN--IMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKM   76 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccC-C-CCccc--eeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeec
Confidence            35788999999999999999999644 3 45667  77999999999999999999999999999999999999999999


Q ss_pred             eeccccCCCceEE-eCCCCCCcccEEecc
Q 033475           90 NMTCVNHETGVVL-FLFDLNSVHLVFLAS  117 (118)
Q Consensus        90 ~HPnV~~~~g~~c-~~L~~~w~~~~~~~~  117 (118)
                      ||||||.+ |.+| +||+..|+|.+.++|
T Consensus        77 FHPNvya~-G~iClDiLqNrWsp~Ydva~  104 (152)
T KOG0419|consen   77 FHPNVYAD-GSICLDILQNRWSPTYDVAS  104 (152)
T ss_pred             cCCCcCCC-CcchHHHHhcCCCCchhHHH
Confidence            99999976 5555 999999999887654

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=6.7e-35  Score=202.96  Aligned_cols=98  Identities=23%  Similarity=0.356  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      +.|||++|++++++++++++ .+. +.++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i-~~~-~~~~d--~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN   78 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGI-KAE-PDPGN--YRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN   78 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCe-EEE-ECCCC--ccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence            46899999999999999995 444 45667  669999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCCCCCcccEEec
Q 033475           94 VNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        94 V~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |+. +|.|| ++|+++|+|.+++.
T Consensus        79 V~~-~G~iCl~iL~~~W~p~~ti~  101 (152)
T PTZ00390         79 IDK-LGRICLDILKDKWSPALQIR  101 (152)
T ss_pred             ECC-CCeEECccCcccCCCCCcHH
Confidence            995 67777 99999999998864

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=4.7e-34  Score=197.73  Aligned_cols=97  Identities=25%  Similarity=0.428  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      .+||+||+++++++++++ +.+.. +++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         3 ~~Rl~kE~~~l~~~~~~~-~~~~~-~~~n--l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv   78 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSN-CSAGP-SDEN--LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI   78 (147)
T ss_pred             HHHHHHHHHHHHhCCCCC-eEEEE-CCCC--hheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence            579999999999998888 45553 5667  6699999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCCCCcccEEec
Q 033475           95 NHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        95 ~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      +. +|.+| ++|+++|.|.+++.
T Consensus        79 ~~-~G~iCl~il~~~W~p~~ti~  100 (147)
T PLN00172         79 NS-NGSICLDILRDQWSPALTVS  100 (147)
T ss_pred             CC-CCEEEcccCcCCCCCcCcHH
Confidence            95 77777 99999999998764

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=6.8e-33  Score=194.99  Aligned_cols=99  Identities=24%  Similarity=0.372  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhHcCC---CCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475           14 RNFRLLEELERGEKGI---GDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN   90 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~---~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   90 (118)
                      +.+||++|.+++.++.   ..| +.+...++ |  +.+.++.|.||++||||||.|.++|++|++|||+||+|+|.|+||
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~-I~ve~vn~-~--~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw   79 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAG-IIVEMVNE-N--LKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW   79 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcc-eEEEEccC-C--hhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence            6789999999999987   455 46666654 5  779999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceEE-eCCCCCCcccEEec
Q 033475           91 MTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        91 HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||||++.+|.+| +||++.|.+++||=
T Consensus        80 HPnVSs~tGaICLDilkd~Wa~slTlr  106 (200)
T KOG0418|consen   80 HPNVSSQTGAICLDILKDQWAASLTLR  106 (200)
T ss_pred             cCCCCcccccchhhhhhcccchhhhHH
Confidence            999999999999 99999999999873

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5e-32  Score=183.47  Aligned_cols=103  Identities=23%  Similarity=0.330  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCC-CcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGD-DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~-n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      .++.||+.|-+.+.++.+.|+++......+ ..+|+.|.|.|.|+++|+||||.|.+.|.||++||++||+++|.+++||
T Consensus         4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H   83 (158)
T KOG0424|consen    4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH   83 (158)
T ss_pred             hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence            347799999999999999999887666554 2338899999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEEeCCCCC--CcccEEe
Q 033475           92 TCVNHETGVVLFLFDLN--SVHLVFL  115 (118)
Q Consensus        92 PnV~~~~g~~c~~L~~~--w~~~~~~  115 (118)
                      ||||++|-+|++||+++  |.|.++|
T Consensus        84 PNVypsgtVcLsiL~e~~~W~paiti  109 (158)
T KOG0424|consen   84 PNVYPSGTVCLSILNEEKDWRPAITI  109 (158)
T ss_pred             CCcCCCCcEehhhhccccCCCchhhH
Confidence            99998444444999877  9999875

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.97  E-value=1.1e-31  Score=183.89  Aligned_cols=96  Identities=29%  Similarity=0.458  Sum_probs=79.8

Q ss_pred             HHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccccC
Q 033475           17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNH   96 (118)
Q Consensus        17 Rl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   96 (118)
                      ||++|+++++++++.|+ .+.+.+++|  +..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+ 
T Consensus         1 Rl~~E~~~l~~~~~~~~-~~~~~~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-   76 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGI-SVQPSEDDN--LFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-   76 (140)
T ss_dssp             HHHHHHHHHHHSHTTTE-EEEEESTTE--TTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred             CHHHHHHHHhhCCCCCE-EEEECCCCC--hheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence            89999999999999995 555444447  55999999999999999999999999999999999999999999999999 


Q ss_pred             CCceEE-eCCCCC-CcccEEec
Q 033475           97 ETGVVL-FLFDLN-SVHLVFLA  116 (118)
Q Consensus        97 ~~g~~c-~~L~~~-w~~~~~~~  116 (118)
                      .+|.+| ++|..+ |.|..++.
T Consensus        77 ~~G~icl~~l~~~~W~p~~~i~   98 (140)
T PF00179_consen   77 ENGRICLDILNPESWSPSYTIE   98 (140)
T ss_dssp             TTSBBGHGGGTTTTC-TTSHHH
T ss_pred             ccccchhhhhhcccCCcccccc
Confidence            578777 999865 99976653

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.9e-31  Score=179.92  Aligned_cols=89  Identities=31%  Similarity=0.571  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      ..-|+++|++|++++.+| +++.+.+++|+|  +|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|+||||||
T Consensus         7 ~~ll~~qlk~L~~~pv~g-f~~glvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv   83 (171)
T KOG0425|consen    7 SLLLLKQLKELQEEPVEG-FSVGLVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV   83 (171)
T ss_pred             HHHHHHHHHHHhcCCCCc-cccccccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence            457899999999999999 688888998954  99999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCC
Q 033475           95 NHETGVVL-FLFDL  107 (118)
Q Consensus        95 ~~~~g~~c-~~L~~  107 (118)
                      |+ .|.+| +||..
T Consensus        84 y~-~G~vCISILH~   96 (171)
T KOG0425|consen   84 YE-DGDVCISILHP   96 (171)
T ss_pred             CC-CCCEEEEeecC
Confidence            96 55555 99963

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-30  Score=176.59  Aligned_cols=96  Identities=29%  Similarity=0.429  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      +..|||++||..|+....+||.+  ++++||  ++.|.++|.||.+|+|+|-.|++.+.||.+||++||.|+|+|++|||
T Consensus        29 ~V~KRLq~ELm~Lmms~~~gISA--FP~~dn--lf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HP  104 (175)
T KOG0421|consen   29 SVTKRLQSELMGLMMSNTPGISA--FPESDN--LFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHP  104 (175)
T ss_pred             hHHHHHHHHHHHHHhcCCCCccc--CcCcCc--eeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCC
Confidence            35799999999999999999744  477888  55999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccE
Q 033475           93 CVNHETGVVL-FLFDLNSVHLV  113 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~  113 (118)
                      |||. .|.|| +||++.|+-++
T Consensus       105 NVD~-~GnIcLDILkdKWSa~Y  125 (175)
T KOG0421|consen  105 NVDL-SGNICLDILKDKWSAVY  125 (175)
T ss_pred             Cccc-cccchHHHHHHHHHHHH
Confidence            9996 56666 99999998764

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.97  E-value=4.5e-30  Score=176.14  Aligned_cols=96  Identities=33%  Similarity=0.486  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecccc
Q 033475           16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN   95 (118)
Q Consensus        16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   95 (118)
                      |||++|+++++++++.|+ .+.+ +++|  +..|+++|.||++|||+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus         2 ~Rl~~E~~~l~~~~~~~~-~v~~-~~~~--~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~   77 (141)
T cd00195           2 KRLQKELKDLKKDPPSGI-SAEP-VEEN--LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD   77 (141)
T ss_pred             chHHHHHHHHHhCCCCCe-EEEE-CCCC--hhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence            699999999999998884 5543 5557  66999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEE-eCCCCC-CcccEEec
Q 033475           96 HETGVVL-FLFDLN-SVHLVFLA  116 (118)
Q Consensus        96 ~~~g~~c-~~L~~~-w~~~~~~~  116 (118)
                       .+|.+| ++|..+ |.|..++.
T Consensus        78 -~~G~icl~~l~~~~W~p~~~l~   99 (141)
T cd00195          78 -ENGKICLSILKTHGWSPAYTLR   99 (141)
T ss_pred             -CCCCCchhhcCCCCcCCcCcHH
Confidence             688888 999988 99988753

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-29  Score=169.25  Aligned_cols=92  Identities=26%  Similarity=0.468  Sum_probs=82.7

Q ss_pred             cchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475           11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN   90 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   90 (118)
                      +..++|||++|+++|-+++++||++ .+.++||+|  .|.|.|.||++|+|+||.|-.++.||.|||..||+++|.-.+|
T Consensus         2 ~~~AlkRLm~EykqLt~~~P~GIvA-gP~~EdnfF--~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f   78 (165)
T KOG0426|consen    2 AGTALKRLMAEYKQLTLNPPEGIVA-GPINEDNFF--EWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF   78 (165)
T ss_pred             chhHHHHHHHHHHHHccCCCCccee-CCCCcccee--eeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence            3457899999999999999999755 556888955  9999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceEE-eCCC
Q 033475           91 MTCVNHETGVVL-FLFD  106 (118)
Q Consensus        91 HPnV~~~~g~~c-~~L~  106 (118)
                      |||||.+ |.+| +||.
T Consensus        79 HPNiy~d-G~VCISILH   94 (165)
T KOG0426|consen   79 HPNIYPD-GRVCISILH   94 (165)
T ss_pred             cCcccCC-CeEEEEEee
Confidence            9999975 5555 9985

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.96  E-value=9e-29  Score=170.39  Aligned_cols=96  Identities=35%  Similarity=0.552  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecccc
Q 033475           16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN   95 (118)
Q Consensus        16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   95 (118)
                      +||++|+++++++.++|+..+.. +++|  ++.|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~-~~~~--~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~   77 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPV-DEDN--LLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD   77 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEEC-CCCC--hheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence            59999999999999988644433 3337  66999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEE-eCCC-CCCcccEEe
Q 033475           96 HETGVVL-FLFD-LNSVHLVFL  115 (118)
Q Consensus        96 ~~~g~~c-~~L~-~~w~~~~~~  115 (118)
                      + +|.+| ++|. ++|.|..++
T Consensus        78 ~-~G~icl~~l~~~~W~p~~~l   98 (145)
T smart00212       78 S-SGEICLDILKQEKWSPATTL   98 (145)
T ss_pred             C-CCCEehhhcCCCCCCCCCcH
Confidence            6 78777 9998 899998664

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-28  Score=164.61  Aligned_cols=112  Identities=21%  Similarity=0.239  Sum_probs=96.4

Q ss_pred             CCCCCCCccccch--HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCC
Q 033475            1 MTLGSGGSSVVVP--RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPE   78 (118)
Q Consensus         1 ~~~~~~~s~~~~~--~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~   78 (118)
                      |+++++.++.+..  +.+||+|||.+++.+++.|+ ...  ..||  |..|.+.+.|.+||.|+|..|.+.++||+.||+
T Consensus         1 mtss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~-~~~--v~dn--lqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~   75 (161)
T KOG0427|consen    1 MTSSSAPSRKALSKIATNRLQKELSEWQNNPPTGF-KHR--VTDN--LQQWIIEVTGAPGTLYANETYQLQVEFPEHYPM   75 (161)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcc-eee--cccc--hheeEEEEecCCceeecCcEEEEEEecCCCCCC
Confidence            6777777766655  78999999999999999996 433  3456  789999999999999999999999999999999


Q ss_pred             CCCEEEEeccc-eeccccCCCceEEeCCCCCCcccEEecc
Q 033475           79 KPPSVRFHSRI-NMTCVNHETGVVLFLFDLNSVHLVFLAS  117 (118)
Q Consensus        79 ~pP~v~f~t~i-~HPnV~~~~g~~c~~L~~~w~~~~~~~~  117 (118)
                      +.|+|.|..++ .||+||.+|.+|++||.++|+|++.+.|
T Consensus        76 esPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~S  115 (161)
T KOG0427|consen   76 ESPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQS  115 (161)
T ss_pred             CCCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHH
Confidence            99999999875 7999996555555999999999987654

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.4e-28  Score=162.78  Aligned_cols=95  Identities=24%  Similarity=0.305  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      +.+||.|||++|++++...+ .-...+++|  +..|++.|. |++-||..|.|+++|.||.+|||+||+++|.|+|||||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~-rn~~~~e~n--ll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN   78 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFF-RNIEVDEAN--LLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN   78 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHH-hhhhccccc--ceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence            45799999999999887653 433456778  559999999 89999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eC-CCCCCcccE
Q 033475           94 VNHETGVVL-FL-FDLNSVHLV  113 (118)
Q Consensus        94 V~~~~g~~c-~~-L~~~w~~~~  113 (118)
                      ||+. |.+| +| +.++|.|.-
T Consensus        79 VDe~-gqvClPiis~EnWkP~T   99 (153)
T KOG0422|consen   79 VDEK-GQVCLPIISAENWKPAT   99 (153)
T ss_pred             CCCC-CceeeeeeecccccCcc
Confidence            9974 7777 55 578898853

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6e-27  Score=162.91  Aligned_cols=102  Identities=21%  Similarity=0.297  Sum_probs=79.5

Q ss_pred             cchHHHHHHHHHHHhHcCCCCCceEEeccC-CCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           11 VVPRNFRLLEELERGEKGIGDGTVSYGMDD-GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~-~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      +..+.-||++|..+++-  +++ ++...++ .++++..+++++|. |+++.|+||.|.|.+++|+.||++||+|+|+|+|
T Consensus        26 ~s~a~lrl~~di~elnL--p~t-~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV  101 (184)
T KOG0420|consen   26 VSAALLRLKKDILELNL--PPT-CSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV  101 (184)
T ss_pred             ccHHHHHHHhhhhhccC--CCc-cccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence            33456677777776664  333 4433333 23322225899999 9999999999999999999999999999999999


Q ss_pred             eeccccCCCceEE-eCCCCCCcccEEecc
Q 033475           90 NMTCVNHETGVVL-FLFDLNSVHLVFLAS  117 (118)
Q Consensus        90 ~HPnV~~~~g~~c-~~L~~~w~~~~~~~~  117 (118)
                      ||||||. .|.|| +||.+||.|+++|.|
T Consensus       102 ~HPNId~-~GnVCLnILRedW~P~lnL~s  129 (184)
T KOG0420|consen  102 YHPNIDL-DGNVCLNILREDWRPVLNLNS  129 (184)
T ss_pred             ccCCcCC-cchHHHHHHHhcCccccchHH
Confidence            9999996 55555 999999999999876

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.9e-26  Score=159.33  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      .||+..|...|....    +.+...++ +  +.++++.+.||.+|||+||+++++|.+|++||++.|+|.|.++||||||
T Consensus         5 ~rRid~Dv~KL~~s~----yeV~~ind-~--m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI   77 (189)
T KOG0416|consen    5 KRRIDTDVMKLLMSD----YEVTIIND-G--MQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI   77 (189)
T ss_pred             ccchhhHHHHHHhcC----CeEEEecC-c--ccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence            469999998888754    34444433 4  7799999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCCCCcccEE
Q 033475           95 NHETGVVL-FLFDLNSVHLVF  114 (118)
Q Consensus        95 ~~~~g~~c-~~L~~~w~~~~~  114 (118)
                      ++.+|.|| +++++-|+|..=
T Consensus        78 De~SGsVCLDViNQtWSp~yD   98 (189)
T KOG0416|consen   78 DEASGSVCLDVINQTWSPLYD   98 (189)
T ss_pred             hhccCccHHHHHhhhhhHHHH
Confidence            99999999 999999999753

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.2e-25  Score=155.55  Aligned_cols=104  Identities=20%  Similarity=0.246  Sum_probs=93.0

Q ss_pred             CCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEE
Q 033475            6 GGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF   85 (118)
Q Consensus         6 ~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   85 (118)
                      +..+....-+|.+.+|++++..++++|| .+. ++++|  +....+.|.||.||||++|.|++.+.+..|||.+||+-.|
T Consensus         3 snenlpp~vik~~~kEl~~l~~~PPdGI-KV~-~NeeD--~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYF   78 (223)
T KOG0423|consen    3 SNENLPPNVIKQLAKELKSLDESPPDGI-KVV-VNEED--FTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYF   78 (223)
T ss_pred             cccCCChHHHHHHHHHHHhcccCCCCce-EEe-cChHH--hHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCccee
Confidence            3456667789999999999999999996 544 45666  6688999999999999999999999999999999999999


Q ss_pred             eccceeccccCCCceEE-eCCCCCCcccEE
Q 033475           86 HSRINMTCVNHETGVVL-FLFDLNSVHLVF  114 (118)
Q Consensus        86 ~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~  114 (118)
                      +|+||||||- .+|++| +.|+.||.|.+-
T Consensus        79 lTKIFHPNVa-aNGEICVNtLKkDW~p~LG  107 (223)
T KOG0423|consen   79 LTKIFHPNVA-ANGEICVNTLKKDWNPSLG  107 (223)
T ss_pred             eeeeccCCcc-cCceehhhhhhcccCcccc
Confidence            9999999999 589999 999999999764

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=9.7e-23  Score=146.47  Aligned_cols=98  Identities=22%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             cchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475           11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN   90 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   90 (118)
                      +-.+.|||+||++.|++++.+++.+  .+.++||  .+|+.+|.||++|||+||.|+..+.||.+||++||.|+++|+--
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A--~P~p~nI--LEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG   78 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVA--RPNPNNI--LEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG   78 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhcc--CCCccce--eeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC
Confidence            3457899999999999999999744  4677884  59999999999999999999999999999999999999999831


Q ss_pred             eccccCCCceEEeCCC---CCCcccEE
Q 033475           91 MTCVNHETGVVLFLFD---LNSVHLVF  114 (118)
Q Consensus        91 HPnV~~~~g~~c~~L~---~~w~~~~~  114 (118)
                        ..-.++..|++|.+   +.|.|.|.
T Consensus        79 --RFktntRLCLSiSDfHPdsWNP~Ws  103 (244)
T KOG0894|consen   79 --RFKTNTRLCLSISDFHPDSWNPGWS  103 (244)
T ss_pred             --ceecCceEEEeccccCcCcCCCccc
Confidence              11222456667764   88988774

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.6e-19  Score=130.46  Aligned_cols=99  Identities=26%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             cccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475            9 SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus         9 ~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      +...++.|||+||.++++ ++.+.+.+  ++-+||  |++|+++|.||.+|-|+||+|+.+|.||.|||++||.+..+|+
T Consensus         7 N~KnpaVkRlmkEa~El~-~Ptd~yha--~plEdN--lFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp   81 (314)
T KOG0428|consen    7 NLKNPAVKRLMKEAAELK-DPTDHYHA--QPLEDN--LFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP   81 (314)
T ss_pred             cccCHHHHHHHHHHHHhc-Cchhhhhh--ccchhc--eeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC
Confidence            345678999999999999 55555433  456788  5599999999999999999999999999999999999999987


Q ss_pred             ceeccccCCCceEEeCCC---CCCcccEE
Q 033475           89 INMTCVNHETGVVLFLFD---LNSVHLVF  114 (118)
Q Consensus        89 i~HPnV~~~~g~~c~~L~---~~w~~~~~  114 (118)
                      --.--++  ..+|++|..   +.|.|.|-
T Consensus        82 NGRFE~n--kKiCLSISgyHPEtWqPSWS  108 (314)
T KOG0428|consen   82 NGRFEVN--KKICLSISGYHPETWQPSWS  108 (314)
T ss_pred             CCceeeC--ceEEEEecCCCccccCcchh
Confidence            4333333  345558764   78888764

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=4.9e-16  Score=104.56  Aligned_cols=104  Identities=58%  Similarity=0.936  Sum_probs=92.7

Q ss_pred             ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      +.+||.-||.+|+.+=++...++.+++.+.+.+++-|..|.+.|.||+.|+||+.+|.++|..-.+||..||.|+|.+++
T Consensus         2 ~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki   81 (138)
T KOG0896|consen    2 VKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI   81 (138)
T ss_pred             CccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe
Confidence            45789999999999999998899899998888888789999999999999999999999999999999999999999999


Q ss_pred             eeccccCCCceEE--eC-CCCCCcccE
Q 033475           90 NMTCVNHETGVVL--FL-FDLNSVHLV  113 (118)
Q Consensus        90 ~HPnV~~~~g~~c--~~-L~~~w~~~~  113 (118)
                      --+.|+..+|++-  ++ .-.+|.-.+
T Consensus        82 nm~gvn~~~g~Vd~~~i~~L~~W~~~y  108 (138)
T KOG0896|consen   82 NMNGVNSSNGVVDPRDITVLARWQRSY  108 (138)
T ss_pred             eecccccCCCccCccccchhhcccccc
Confidence            9999999999883  44 246666543

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=5.4e-14  Score=101.85  Aligned_cols=92  Identities=14%  Similarity=0.206  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCC--CCCCEEEEecccee
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP--EKPPSVRFHSRINM   91 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP--~~pP~v~f~t~i~H   91 (118)
                      ...-|..|+..+.+.+.+||+.  .|+..|-+  .|.++|++-. +.|+||+|+|.|.+|++||  ..-|+|.|.+.++|
T Consensus        20 qey~llAEf~lV~~ekL~gIyv--iPSyan~l--~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfH   94 (258)
T KOG0429|consen   20 QEYALLAEFVLVCREKLDGIYV--IPSYANKL--LWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFH   94 (258)
T ss_pred             HHHHHHHHHHHHHhccCCceEE--cccccccc--eEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccc
Confidence            3456778888888899999844  46777854  9999999755 5999999999999999999  46799999999999


Q ss_pred             ccccCCCceEE-eCCCCCCc
Q 033475           92 TCVNHETGVVL-FLFDLNSV  110 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~  110 (118)
                      |+|.+.++.+| +-.-.+|.
T Consensus        95 P~icp~skeLdl~raf~eWR  114 (258)
T KOG0429|consen   95 PLICPKSKELDLNRAFPEWR  114 (258)
T ss_pred             cccCCCccceeHhhhhhhhh
Confidence            99999999998 44333364

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=7.1e-13  Score=112.52  Aligned_cols=102  Identities=19%  Similarity=0.229  Sum_probs=84.6

Q ss_pred             CCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEE
Q 033475            6 GGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF   85 (118)
Q Consensus         6 ~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   85 (118)
                      +.+..+....+|+++|++.+.++.+.+++  ..+.+..  +...+++|.||.+|||++|.|.|+|+||..||..||.|++
T Consensus       275 ~~k~hs~~~skrv~ke~~llskdlpEgif--vrp~e~R--Md~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~  350 (1101)
T KOG0895|consen  275 SSKPHSKNWSKKVAKELKLLSKDLPEGIF--VRPDEGR--MDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKY  350 (1101)
T ss_pred             CCCccchhhHHHHHHHhhhhcccCCCCcc--ccccccc--cceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEE
Confidence            33444556789999999999999999963  3355656  7799999999999999999999999999999999999999


Q ss_pred             ecc---ceeccccCCCceEE-eCCC-------CCCccc
Q 033475           86 HSR---INMTCVNHETGVVL-FLFD-------LNSVHL  112 (118)
Q Consensus        86 ~t~---i~HPnV~~~~g~~c-~~L~-------~~w~~~  112 (118)
                      +|.   .+.||.|. .|+|| ++|.       +.|.|.
T Consensus       351 lt~~~~R~nPNlYn-~GKVcLslLgTwtg~~~e~wtp~  387 (1101)
T KOG0895|consen  351 LTGGGVRLNPNLYN-DGKVCLSLLGTWTGSRREKWTPN  387 (1101)
T ss_pred             eeccceeecCCccc-CceEEeeeeeecccccccCCCcc
Confidence            987   67999995 66777 7763       556654

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.1e-13  Score=117.27  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc--cee
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR--INM   91 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~H   91 (118)
                      -.+..+.|++.+..+.+.+++...  .++-  |.-.++.|.||.+|||++|.|.|++.||++||..||.|...+-  .++
T Consensus       852 ~~~~~~~~~~~~~~~~~~~~~vr~--~e~r--~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~n  927 (1101)
T KOG0895|consen  852 WAKKVQTEWKILPLSLPSGIFVRA--YEDR--MDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLN  927 (1101)
T ss_pred             HHHHHHHHHHhhhccCCCceEEEe--chHH--HHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeC
Confidence            345556677777788888875443  4554  4466899999999999999999999999999999999999874  579


Q ss_pred             ccccCCCceEE-eCCC
Q 033475           92 TCVNHETGVVL-FLFD  106 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~  106 (118)
                      ||.|. .|++| ++|+
T Consensus       928 pnly~-~g~vc~s~l~  942 (1101)
T KOG0895|consen  928 PNLYE-DGKVCLSLLN  942 (1101)
T ss_pred             ccccc-ccceehhhhc
Confidence            99995 66666 8886

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.23  E-value=0.00082  Score=45.60  Aligned_cols=40  Identities=25%  Similarity=0.450  Sum_probs=34.7

Q ss_pred             CCcEEEEEEEccCCCCCCCCEEEEeccc---eeccccCCCceEE
Q 033475           62 EGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVL  102 (118)
Q Consensus        62 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~g~~c  102 (118)
                      .++.+.+.|.+|++||..||.|....+-   +=|||+. +|.+|
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LC   76 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLC   76 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEE
Confidence            5899999999999999999999888654   6899997 66666

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.00074  Score=44.77  Aligned_cols=48  Identities=19%  Similarity=0.133  Sum_probs=33.4

Q ss_pred             EEEEEccCCCCCCCCEEEEeccceeccccCCCceEE-eCC-CCCCcccEE
Q 033475           67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVL-FLF-DLNSVHLVF  114 (118)
Q Consensus        67 ~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~g~~c-~~L-~~~w~~~~~  114 (118)
                      -+.+.|+++||+.||.++-..|+-.--.-.++|.|| -+| .+.|.+..+
T Consensus        14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~   63 (122)
T KOG0897|consen   14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYE   63 (122)
T ss_pred             EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhh
Confidence            345678999999999999665544333334678888 666 577877543

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=96.52  E-value=0.0018  Score=44.66  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCc----------EEEEEEEccCCCCCCCCEE
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSV   83 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v   83 (118)
                      -..||+.|++.|-+-     +... ...||    .|.-+=--++||-|.|-          .|.+++.+|..||..||.+
T Consensus        25 W~~RLKEEy~aLI~Y-----v~~n-K~~Dn----dWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi   94 (161)
T PF08694_consen   25 WVQRLKEEYQALIKY-----VENN-KENDN----DWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEI   94 (161)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHH-HHTT-------EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----
T ss_pred             HHHHHHHHHHHHHHH-----HHhc-ccccC----CeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcce
Confidence            468999999987541     1110 11111    23222222444444442          2455666799999999999


Q ss_pred             EEecc-ceeccccCCCceEE
Q 033475           84 RFHSR-INMTCVNHETGVVL  102 (118)
Q Consensus        84 ~f~t~-i~HPnV~~~~g~~c  102 (118)
                      ..-.- ---.-.| .||.+|
T Consensus        95 ~lPeLdGKTaKMY-RGGkIC  113 (161)
T PF08694_consen   95 ALPELDGKTAKMY-RGGKIC  113 (161)
T ss_dssp             B-GGGTTT-SSBC-CCCBB-
T ss_pred             eccccCCchhhhh-cCceEe
Confidence            76420 0012234 578877

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.24  E-value=0.032  Score=35.71  Aligned_cols=69  Identities=17%  Similarity=0.130  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEE--CCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTII--GPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~--Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      .++..|+..|+.--++..  ... ...+  -..+.+.+.  ....+.-....+.+.+.||++||..+|.|...+..
T Consensus         4 e~~~~EieaL~sIy~~~~--~~~-~~~~--~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF--IEI-ESKS--PPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE--SSS-TSSS--SEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCc--ccc-ccCC--CCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            467788888886333221  111 1222  225566662  12344445678999999999999999999877653

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=96.03  E-value=0.012  Score=39.36  Aligned_cols=60  Identities=23%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             eeEEEEEEECCCCCCCCCcEEEEE--EEccCCCCCCCCEEEEeccc-----eeccccCCCceEE-eCCCCCCcc
Q 033475           46 MRSWTGTIIGPHNTVHEGRIYQLK--LFCDKDYPEKPPSVRFHSRI-----NMTCVNHETGVVL-FLFDLNSVH  111 (118)
Q Consensus        46 l~~w~~~i~Gp~~tpy~gg~f~~~--i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~g~~c-~~L~~~w~~  111 (118)
                      |....++|.-    .|+|..|.+-  |-+|++||.+||.+......     -+.+||. +|.|. +.|+ +|.+
T Consensus        32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL~-~W~~   99 (121)
T PF05743_consen   32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYLQ-NWNP   99 (121)
T ss_dssp             EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHHH-T--T
T ss_pred             EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchhc-cCCC
Confidence            6677777752    5888888654  55799999999999765322     1449995 67775 5553 4543

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.33  E-value=0.026  Score=38.42  Aligned_cols=85  Identities=15%  Similarity=0.150  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcE----------EEEEEEccCCCCCCCCEE
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI----------YQLKLFCDKDYPEKPPSV   83 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v   83 (118)
                      -.+||+.|++.|-.-.     ... .+.+|    .|.-+=.-++||-|-|-+          |.+++.+|-.||..+|.+
T Consensus        28 wvqrlkeey~sli~yv-----qnn-k~~d~----dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei   97 (167)
T KOG3357|consen   28 WVQRLKEEYQSLIAYV-----QNN-KSNDN----DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI   97 (167)
T ss_pred             HHHHHHHHHHHHHHHH-----HhC-cccCC----cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence            3689999999886411     000 11122    343333446677776632          455566799999999998


Q ss_pred             EEecc-ceeccccCCCceEE--eCCCCCC
Q 033475           84 RFHSR-INMTCVNHETGVVL--FLFDLNS  109 (118)
Q Consensus        84 ~f~t~-i~HPnV~~~~g~~c--~~L~~~w  109 (118)
                      ..--- -----.| .+|.+|  +-++.=|
T Consensus        98 alpeldgktakmy-rggkiclt~hfkplw  125 (167)
T KOG3357|consen   98 ALPELDGKTAKMY-RGGKICLTDHFKPLW  125 (167)
T ss_pred             cccccCchhhhhh-cCceEeeccccchhh
Confidence            75310 0011234 588888  5555544

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=94.78  E-value=0.14  Score=32.42  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             CcEEEEEEEccCCCCCCCCEEEEecc
Q 033475           63 GRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        63 gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      ...+.+.+.+|++||..+|.|.+.+.
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC
Confidence            45688999999999999999988754

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.51  E-value=0.19  Score=39.33  Aligned_cols=72  Identities=22%  Similarity=0.294  Sum_probs=48.1

Q ss_pred             EEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEE--ccCCCCCCCCEEEEecc-----ceeccccCCCceE-EeCCC
Q 033475           35 SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF--CDKDYPEKPPSVRFHSR-----INMTCVNHETGVV-LFLFD  106 (118)
Q Consensus        35 ~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~HPnV~~~~g~~-c~~L~  106 (118)
                      .+...|+..-.++...++|.    .+|+|.+|.+-|.  +.+.||..||.+.....     -.|-+||+ +|.| ++.|+
T Consensus        41 tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYLh  115 (365)
T KOG2391|consen   41 TFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYLH  115 (365)
T ss_pred             eEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhhc
Confidence            44455554322445555554    4788999987666  69999999999855421     13999996 5655 58885


Q ss_pred             CCCccc
Q 033475          107 LNSVHL  112 (118)
Q Consensus       107 ~~w~~~  112 (118)
                       +|.+.
T Consensus       116 -~W~~p  120 (365)
T KOG2391|consen  116 -NWDPP  120 (365)
T ss_pred             -cCCCc
Confidence             57654

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=84.24  E-value=3.1  Score=28.03  Aligned_cols=41  Identities=15%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             EEEEEEEC--CCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           48 SWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        48 ~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      .|-+ |.|  -+.+.|....-.+-|.+|..||..+|-+.+..+-
T Consensus        25 ~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~   67 (122)
T PF14462_consen   25 RWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP   67 (122)
T ss_pred             cEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc
Confidence            5654 554  4455799999999999999999999987766553

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.99  E-value=8.2  Score=33.75  Aligned_cols=68  Identities=24%  Similarity=0.260  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCC-CCCEEEEec
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPE-KPPSVRFHS   87 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t   87 (118)
                      .+-|.+|+.-|-..-+ . +.++-.+-.   -+...+.+.+|-..-=.-...++.|.||.+||. .+|++.|..
T Consensus       422 pQnLgeE~S~Ig~k~~-n-V~fEkidva---~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~  490 (1081)
T KOG0309|consen  422 PQNLGEEFSLIGVKIR-N-VNFEKIDVA---DRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFEN  490 (1081)
T ss_pred             hhhHHhHHhHhhcccc-c-cceEeeccc---cceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEec
Confidence            3467777777765432 1 223311222   135667777765543222445788999999996 579999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		7e-26
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-25
1j74_A	145	Crystal Structure Of Mms2 Length = 145		2e-25
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-25
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		3e-25
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		3e-25
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		4e-25
2gmi_B	137	Mms2UBC13~UBIQUITIN Length = 137		4e-23
1jat_B	138	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		5e-23
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-21
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		6e-20
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		4e-07
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		4e-07
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		6e-07
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-06
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-06
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-06
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		5e-06
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		5e-06
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		5e-06
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-06
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-06
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		6e-06
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		6e-06
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-06
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-06
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		6e-06
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		6e-06
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		6e-06
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		6e-06
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-06
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		6e-06
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		7e-06
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		7e-06
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		7e-06
3jvz_A	146	E2~ubiquitin-Hect Length = 146		9e-06
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		1e-05
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-05
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-05
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-05
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		2e-05
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-05
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		2e-05
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		2e-05
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		4e-05
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		7e-05
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		1e-04
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-04
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		1e-04
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		1e-04
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		1e-04
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		1e-04
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-04
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-04
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-04
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-04
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-04
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-04
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		2e-04
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-04
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		3e-04
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		3e-04
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-04
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		3e-04
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		3e-04
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		4e-04
1jas_A	152	Hsubc2b Length = 152		6e-04

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 65/96 (67%)
Query: 6   GGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI 65
           G + V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RI
Sbjct: 18  GSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRI 77
Query: 66  YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           Y LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct: 78  YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Query: 3   LGSGGSS--VVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           LGS   S  V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T 
Sbjct: 3   LGSMAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTN 62
Query: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           +E RIY LK+ C   YPE PPSVRF ++INM  +N+ +G+V
Sbjct: 63  YENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 10  VVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 69
           V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T +E RIY LK
Sbjct: 7   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 66
Query: 70  LFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           + C   YPE PPSVRF ++INM  +N+ +G+V
Sbjct: 67  VECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 10  VVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 69
           V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T +E RIY LK
Sbjct: 1   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 60
Query: 70  LFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           + C   YPE PPSVRF ++INM  +N+ +G+V
Sbjct: 61  VECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 63/92 (68%)
Query: 10  VVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 69
           V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY LK
Sbjct: 32  VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 70  LFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           + C   YPE PP VRF ++INM  VN   GVV
Sbjct: 92  IECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 10  VVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 69
           V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T +E RIY LK
Sbjct: 2   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 61
Query: 70  LFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           + C   YPE PPSVRF ++INM  +N+ +G+V
Sbjct: 62  VECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 64/94 (68%)
Query: 8   SSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67
           + V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG I+GP  T++E RIY 
Sbjct: 2   TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYS 61
Query: 68  LKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct: 62  LKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95

>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN Length = 137

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 58/90 (64%)
Query: 12  VPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
           VPRNFR      +GEKG G  + SYG+ D DDI M  W GTI+GP ++ HE RIY L + 
Sbjct: 4   VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSID 63
Query: 72  CDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           C  +YP+ PP V F S+IN+ CVN  TG V
Sbjct: 64  CGPNYPDSPPKVTFISKINLPCVNPTTGEV 93

>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 138

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 58/90 (64%)
Query: 12  VPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
           VPRNFR      +GEKG G  + SYG+ D DDI M  W GTI+GP ++ HE RIY L + 
Sbjct: 5   VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSID 64
Query: 72  CDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           C  +YP+ PP V F S+IN+ CVN  TG V
Sbjct: 65  CGPNYPDSPPKVTFISKINLPCVNPTTGEV 94

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 61/92 (66%)
Query: 5   SGGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR 64
            G S V+VPR+FR      RG+KG     VS+G++  DDI + +W+ TI G   TV E R
Sbjct: 17  QGMSEVIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENR 76
Query: 65  IYQLKLFCDKDYPEKPPSVRFHSRINMTCVNH 96
           IY L +FCD +YP+ PP+V+F ++I M+CV++
Sbjct: 77  IYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN 108

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 11  VVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKL 70
           +VPR+FR      RG+KG     VS+G++  DDI + +W+ TI G   TV E RIY L +
Sbjct: 19  IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 78
Query: 71  FCDKDYPEKPPSVRFHSRINMTCVNH 96
           FCD +YP+ PP+V+F ++I M+CV++
Sbjct: 79  FCDDNYPDSPPTVKFDTKIEMSCVDN 104

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GD+IY   W  TI+GP  +V+EG ++ L +    DYP KPP V F +RI    +N +  +
Sbjct: 29  GDNIY--EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVI 86
Query: 101 VLFLFDLN 108
            L +   N
Sbjct: 87  CLDILKDN 94

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 35  SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94
           S G+ D +DIY   W   +IGP +T++EG  ++  L   +DYP+KPP ++F S I    +
Sbjct: 24  SAGLVDDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI 81
Query: 95  NHETGVVLFLF 105
           + E  V + + 
Sbjct: 82  DKEGNVCISIL 92

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  SL 88

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GD+IY   W  TI+GP  +V+EG ++ L +    +YP KPP V F +RI    +N +  +
Sbjct: 74  GDNIY--EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVI 131
Query: 101 VLFLFDLN 108
            L +   N
Sbjct: 132 CLDILKDN 139

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI 84
Query: 101 VL 102
            L
Sbjct: 85  SL 86

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 35  SYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94
           S G+ D +D+Y   W   IIGP +T++EG +++  L   KDYP +PP ++F + I    V
Sbjct: 38  SAGLIDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 95
Query: 95  NHETGVVLFLF 105
           +    V + + 
Sbjct: 96  DKNGDVCISIL 106

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP ++ + G ++ L +    DYP KPP V F ++I    +N +  +
Sbjct: 47  GDDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAI 104
Query: 101 VL 102
            L
Sbjct: 105 CL 106

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 32  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 89
Query: 101 VL 102
            L
Sbjct: 90  CL 91

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 35  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 92
Query: 101 VL 102
            L
Sbjct: 93  CL 94

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  CL 88

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  CL 88

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  CL 88

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 37  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 101 VL 102
            L
Sbjct: 95  CL 96

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 45  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 101 VL 102
            L
Sbjct: 103 CL 104

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 45  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 101 VL 102
            L
Sbjct: 103 XL 104

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  CL 88

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 40 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 85
          DGD+++   W  T+ GP +TV+E   Y+L L    DYP KPP V+F
Sbjct: 34 DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKF 77

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 37  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 101 VL 102
            L
Sbjct: 95  CL 96

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  CL 88

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP ++ + G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDLF--HWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSI 84
Query: 101 VL 102
            L
Sbjct: 85  CL 86

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 26  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Query: 101 VL 102
            L
Sbjct: 84  CL 85

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 101 VL 102
            L
Sbjct: 85  CL 86

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 30  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 101 VL 102
            L
Sbjct: 88  SL 89

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 27  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 101 VL 102
            L
Sbjct: 85  SL 86

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 26  GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Query: 101 VL 102
            L
Sbjct: 84  SL 85

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 49 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          W   I GP +T  +G  ++L L   +DYP KPP+VRF SR+
Sbjct: 36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRM 76

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP  + ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 30  GDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 101 VL 102
            L
Sbjct: 88  CL 89

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP V F ++I    +N    +
Sbjct: 32  GDDLF--HWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSI 89
Query: 101 VL 102
            L
Sbjct: 90  CL 91

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 45  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 102
Query: 101 VL 102
            L
Sbjct: 103 CL 104

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 29  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  CL 88

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  T +GP+++ ++G ++ L +    DYP KPP V F +RI    +N    +
Sbjct: 29  GDDMF--HWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 101 VL 102
            L
Sbjct: 87  CL 88

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 33  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 101 VL 102
            L
Sbjct: 91  CL 92

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD++   W  TI+GP ++ ++G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 33  GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 101 VL 102
            L
Sbjct: 91  KL 92

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDD+Y   W  +I+GP ++ + G ++ L +    DYP KPP + F ++I    +N    +
Sbjct: 28  GDDLY--HWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNI 85
Query: 101 VL 102
            L
Sbjct: 86  CL 87

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 49 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          W   IIGP +T +E   ++L L  D++YP KPP V+F S +
Sbjct: 36 WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM 76

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 48  SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
            W G I GP  T +EG  + L +    DYP  PP ++F ++I    ++ +TG +
Sbjct: 54  EWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAI 107

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97
           +D+GD   + +W   I GP NT +EG  ++ +L    DYP  PP+ RF +++    + +E
Sbjct: 32  VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YE 87
Query: 98  TGVV 101
           TG V
Sbjct: 88  TGDV 91

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 38  MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97
           +D+GD   + +W   I GP NT +EG  ++ +L    DYP  PP+ RF +++    + +E
Sbjct: 29  VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YE 84
Query: 98  TGVV 101
           TG V
Sbjct: 85  TGDV 88

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 51  GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLF 103
           G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +  
Sbjct: 94  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICL 146

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 7  GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
          GS+  +P+           EK + D       +  DD  +R +  TI GP  + +E  I+
Sbjct: 1  GSAASLPKRI-----IKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIF 54
Query: 67 QLKLFCDKDYPEKPPSVRFHSRI 89
          +L+L+   DYP + P VRF ++I
Sbjct: 55 ELELYLPDDYPMEAPKVRFLTKI 77

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 51  GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVLF 103
           G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +  
Sbjct: 58  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICL 110

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 26 EKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 85
          EK + D       +  DD  +R +  TI GP  + +E  I++L+L+   DYP + P VRF
Sbjct: 13 EKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRF 71
Query: 86 HSRINMTCVNH 96
           ++I    ++ 
Sbjct: 72 LTKIYHPAIDR 82

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 51  GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 45  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 51  GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 42  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 51  GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           G I GP +T +EG  YQL++   + YP  PP VRF ++I    ++  TG +
Sbjct: 43  GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           G DI+   W G I GP  T +EG  + L +    DYP  PP ++F ++I    ++ +TG 
Sbjct: 71  GGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGA 128
Query: 101 V 101
           +
Sbjct: 129 I 129

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 26 EKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 85
          EK + D       +  DD  +R +  TI GP  + +E  I++L+L+   DYP + P VRF
Sbjct: 13 EKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRF 71
Query: 86 HSRI 89
           ++I
Sbjct: 72 LTKI 75

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 26 EKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 85
          EK + D       +  DD  +R +  TI GP  + +E  I++L+L+   DYP + P VRF
Sbjct: 13 EKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRF 71
Query: 86 HSRI 89
           ++I
Sbjct: 72 LTKI 75

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 48 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          +W   I GP  T  E   ++L L   ++YP KPP+V+F S++
Sbjct: 35 TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKM 76

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 40  DGDDIYMRSWTGTIIGPHNTVH--EGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 97
           D D IY  +W   +  P ++V+   G  YQL +    DYP +PP+VRF + +    V  E
Sbjct: 45  DTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGE 102
Query: 98  TGV 100
            G+
Sbjct: 103 GGI 105

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 48 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          +W   I GP  T  E   ++L L   ++YP KPP+V+F S++
Sbjct: 38 TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKM 79

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 47 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          R +   I GP  T +EG  Y+L+LF  + YP +PP VRF ++I
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 47 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          R +   I GP  T +EG  Y+L+LF  + YP +PP VRF ++I
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 46 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 88
          +R W    +G  NT++   +Y+LK+    DYP KPP V F  +
Sbjct: 35 IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 41  GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 100
           GDDI+   WT TI GP ++ ++G ++ L +    DYP K P V F +++    +N + GV
Sbjct: 30  GDDIF--HWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN-KNGV 86
Query: 101 V 101
           +
Sbjct: 87  I 87

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 49 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          W   I GP  T  E   ++L +   ++YP KPP+VRF S++
Sbjct: 36 WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKM 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	2e-44
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	5e-44
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	7e-44
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	3e-43
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	5e-17
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	5e-17
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	8e-17
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-15
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	1e-15
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-15
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	2e-15
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	4e-15
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	7e-15
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	1e-14
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	1e-14
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-14
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-14
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	2e-14
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	2e-14
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-14
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-14
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	3e-14
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	3e-14
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	3e-14
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-14
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	3e-14
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	4e-14
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	4e-14
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	4e-14
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	4e-14
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	4e-14
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	5e-14
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	6e-14
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	8e-14
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	9e-14
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	1e-13
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	1e-13
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-13
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-13
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	3e-13
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	4e-13
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	2e-12
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-12
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	2e-12
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	2e-12
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	3e-12
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	5e-12
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	4e-11
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	1e-10
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	3e-06

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  140 bits (355), Expect = 2e-44
 Identities = 53/90 (58%), Positives = 64/90 (71%)

Query: 12  VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
           VPRNFRLLEELE+GEKG G  + SYG+ D DDI M  W GTI+GP ++ HE RIY L + 
Sbjct: 5   VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSID 64

Query: 72  CDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           C  +YP+ PP V F S+IN+ CVN  TG V
Sbjct: 65  CGPNYPDSPPKVTFISKINLPCVNPTTGEV 94

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  140 bits (354), Expect = 5e-44
 Identities = 56/98 (57%), Positives = 69/98 (70%)

Query: 4   GSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEG 63
                 V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E 
Sbjct: 26  KFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYEN 85

Query: 64  RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           RIY LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct: 86  RIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  139 bits (352), Expect = 7e-44
 Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67
              +VPR+FRLL+ELERG+KG     VS+G++  DDI + +W+ TI G   TV E RIY 
Sbjct: 16  FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYS 75

Query: 68  LKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           L +FCD +YP+ PP+V+F ++I M+CV+   G V
Sbjct: 76  LTIFCDDNYPDSPPTVKFDTKIEMSCVD-NCGRV 108

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  137 bits (348), Expect = 3e-43
 Identities = 57/96 (59%), Positives = 71/96 (73%)

Query: 6   GGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI 65
           G + V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RI
Sbjct: 18  GSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRI 77

Query: 66  YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           Y LK+ C   YPE PP VRF ++INM  VN   GVV
Sbjct: 78  YSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 71.2 bits (175), Expect = 5e-17
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 8  SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67
          +++ V R  R  +E+ + E+   +  +   + D +        G I GP +T +EG  YQ
Sbjct: 6  ANIAVQRIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQ 61

Query: 68 LKLFCDKDYPEKPPSVRFHSRI 89
          L++   + YP  PP VRF ++I
Sbjct: 62 LEIKIPETYPFNPPKVRFITKI 83

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 72.1 bits (177), Expect = 5e-17
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)

Query: 8  SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67
          +++ V R  R  +E+ + E+   +  +   + D +        G I GP +T +EG  YQ
Sbjct: 3  ANIAVQRIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQ 58

Query: 68 LKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 99
          L++   + YP  PP VRF ++I    ++  TG
Sbjct: 59 LEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 72.2 bits (177), Expect = 8e-17
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 8   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67
           +++ V R  R  +E+ + E+   +  +   + D +        G I GP +T +EG  YQ
Sbjct: 55  ANIAVQRIKREFKEVLKSEETSKNQ-IKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQ 110

Query: 68  LKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           L++   + YP  PP VRF ++I    ++  TG +
Sbjct: 111 LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 67.0 bits (164), Expect = 1e-15
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL +EL   +     G         + I    W   + G   T++EG  +QL       Y
Sbjct: 26 RLQKELLALQNDPPPGMTLNEKSVQNSIT--QWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83

Query: 77 PEKPPSVRFHSR 88
          P   P V F   
Sbjct: 84 PFDSPQVMFTGE 95

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 1  MTLGSGGSSVVVPRNFRLLEELER----GEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGP 56
          MT      SV   +  RL +EL      G+ GI     +   D  +   +  W  T+ GP
Sbjct: 1  MTTSKERHSV--SK--RLQQELRTLLMSGDPGI-----TAFPDGDN---LFKWVATLDGP 48

Query: 57 HNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
           +TV+E   Y+L L    DYP KPP V+F +  
Sbjct: 49 KDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC 81

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 67.4 bits (165), Expect = 2e-15
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 4   GSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEG 63
           GS   +  +  N R   +  R    + + T      D     +  +     GP  T +E 
Sbjct: 3   GSMSGAGNLRSNRRREMDYMR----LCNSTRKVYPSDT----VAEFWVEFKGPEGTPYED 54

Query: 64  RIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVV 101
             + L +    DYP K PS+ F +RI   N   V+  +G V
Sbjct: 55  GTWMLHVQLPSDYPFKSPSIGFCNRILHPN---VDERSGSV 92

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 67.4 bits (165), Expect = 2e-15
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 17  RLLEELER----GEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFC 72
           RL +EL      G+KGI     S   +  +   +  W GTI G   TV+E   Y+L L  
Sbjct: 34  RLQQELMTLMMSGDKGI-----SAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEF 85

Query: 73  DKDYPEKPPSVRFHSRI 89
              YP   P+V+F +  
Sbjct: 86  PSGYPYNAPTVKFLTPC 102

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 65.7 bits (161), Expect = 4e-15
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 7  GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
          GS+  +P+  R+++E E+       G ++    D +   +R +  TI GP  + +E  I+
Sbjct: 1  GSAASLPK--RIIKETEKLVSDPVPG-ITAEPHDDN---LRYFQVTIEGPEQSPYEDGIF 54

Query: 67 QLKLFCDKDYPEKPPSVRFHSRI 89
          +L+L+   DYP + P VRF ++I
Sbjct: 55 ELELYLPDDYPMEAPKVRFLTKI 77

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 65.8 bits (161), Expect = 7e-15
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           L  +    ++    G ++      D   M  W   I G  N+V +G ++QL +    +Y
Sbjct: 27 LLHRDFCDLKENNYKG-ITAKPVSED---MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 82

Query: 77 PEKPPSVRFHSRI 89
             PP V+F +  
Sbjct: 83 NYAPPVVKFITIP 95

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 65.5 bits (160), Expect = 1e-14
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 40  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
            GD+IY   W  TI+GP  +V+EG ++ L +    +YP KPP V F +RI
Sbjct: 73  KGDNIY--EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI 120

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 64.3 bits (157), Expect = 1e-14
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+ +EL    K       +  +   +   +R W    +G  NT++   +Y++K+    +Y
Sbjct: 24 RIQKELNNFLKNPPIN-CTIDVHPSN---IRIWIVQYVGLENTIYANEVYKIKIIFPDNY 79

Query: 77 PEKPPSVRFHSRI 89
          P KPP V F  + 
Sbjct: 80 PLKPPIVYFLQKP 92

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 65.0 bits (159), Expect = 1e-14
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIY-MRSWTGTIIGPHNTVHEGRIYQLKLFCDKD 75
          RL +E +   K    G V+    + D    + +W   I G   T  EG +++L++    D
Sbjct: 11 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70

Query: 76 YPEKPPSVRFHSRI 89
          YP  PP  +F   +
Sbjct: 71 YPSSPPKCKFEPPL 84

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 64.2 bits (157), Expect = 2e-14
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 13  PRNFRLLEELERG-EKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
               R   +  +    G         +++G     + +     GP+ T +EG I+++ + 
Sbjct: 2   TSLTRKQCDFTKLIMAGY-----DLELNNGS---TQDFDVMFHGPNGTAYEGGIWKVHVT 53

Query: 72  CDKDYPEKPPSVRFHSRI---NMTCVNHETGVV 101
              DYP   PS+ F +++   N   V+  +G V
Sbjct: 54  LPDDYPFASPSIGFMNKLLHPN---VDEASGSV 83

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 64.6 bits (158), Expect = 2e-14
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 17 RLLEELERGEK----GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFC 72
          RL EE ++  +    G          D G D+   +W   I G   T  EG +Y+L +  
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCK-SSDGGLDLM--NWKVGIPGKPKTSWEGGLYKLTMAF 70

Query: 73 DKDYPEKPPSVRFHSRI 89
           ++YP +PP  RF   +
Sbjct: 71 PEEYPTRPPKCRFTPPL 87

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 64.2 bits (157), Expect = 2e-14
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL+ + +R ++    G +S    D +   +  W   I GP +T  +G  ++L L   +DY
Sbjct: 8  RLMRDFKRLQQDPPAG-ISGAPQDNN---IMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63

Query: 77 PEKPPSVRFHSRI 89
          P KPP+VRF SR+
Sbjct: 64 PNKPPTVRFVSRM 76

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 63.4 bits (155), Expect = 2e-14
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+ +EL            +  +   +   +R W    +G  NT++   +Y+LK+    DY
Sbjct: 10 RIQKELHNFLNNPPIN-CTLDVHPNN---IRIWIVKYVGLENTIYANEVYKLKIIFPDDY 65

Query: 77 PEKPPSVRFHSRI 89
          P KPP V F  + 
Sbjct: 66 PLKPPIVYFLQKP 78

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 64.3 bits (157), Expect = 2e-14
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL+ E ++      +G +  G  + ++ +   W   I+GP +T  E  ++   L    DY
Sbjct: 7  RLMAEYKQLTLNPPEG-IVAGPMNEENFF--EWEALIMGPEDTCFEFGVFPAILSFPLDY 63

Query: 77 PEKPPSVRFHSRI 89
          P  PP +RF   +
Sbjct: 64 PLSPPKMRFTCEM 76

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 17 RLLEELERGEK----GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFC 72
          RL EE ++  K    G     V         + ++ W   I G   T   G +Y + +  
Sbjct: 8  RLQEERKKWRKDHPFGFYAKPVK---KADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 64

Query: 73 DKDYPEKPPSVRFHSRI 89
            +YP KPP V+F +  
Sbjct: 65 PNEYPSKPPKVKFPAGF 81

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 40 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          + +D+       TI GP  T + G ++++KL   KD+P  PP   F ++I
Sbjct: 38 NEEDLT--DLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 63.9 bits (156), Expect = 3e-14
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL+ + +R ++    G VS      +   +  W   IIGP +T +E   ++L L  D++Y
Sbjct: 8  RLMRDFKRMKEDAPPG-VSASPLPDN---VMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 63

Query: 77 PEKPPSVRFHSRI 89
          P KPP V+F S +
Sbjct: 64 PNKPPHVKFLSEM 76

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 64.4 bits (157), Expect = 3e-14
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 40  DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
            G DI+   W G I GP  T +EG  + L +    DYP  PP ++F ++I
Sbjct: 70  VGGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKI 117

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 63.9 bits (156), Expect = 3e-14
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+ +EL    K       S G    D   M  W  TI+GP ++ + G ++ L +    DY
Sbjct: 25 RINKELNDLSKDPPTN-CSAGPVGDD---MFHWQATIMGPEDSPYSGGVFFLNIHFPSDY 80

Query: 77 PEKPPSVRFHSRI 89
          P KPP V F ++I
Sbjct: 81 PFKPPKVNFTTKI 93

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 64.0 bits (156), Expect = 4e-14
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           LL EL+  ++   +G     + D  D+Y  +W   I GP NT +EG  ++ +L    DY
Sbjct: 11 ALLLELKGLQEEPVEG-FRVTLVDEGDLY--NWEVAIFGPPNTYYEGGYFKARLKFPIDY 67

Query: 77 PEKPPSVRFHSRI 89
          P  PP+ RF +++
Sbjct: 68 PYSPPAFRFLTKM 80

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 63.4 bits (155), Expect = 4e-14
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+++E +R       G +    D+ +    R +   I GP ++  EG  ++L+LF  ++Y
Sbjct: 9  RIIKETQRLLAEPVPG-IKAEPDESN---ARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64

Query: 77 PEKPPSVRFHSRI 89
          P   P VRF ++I
Sbjct: 65 PMAAPKVRFMTKI 77

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 64.8 bits (158), Expect = 4e-14
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL +EL+  E       +   + D +      W G I GP  T +EG  + L +    DY
Sbjct: 27 RLQKELKDIENENVQE-IDAHIKDSN---FFEWVGFIKGPEGTPYEGGHFTLAITIPNDY 82

Query: 77 PEKPPSVRFHSRI 89
          P  PP ++F ++I
Sbjct: 83 PYNPPKIKFVTKI 95

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 63.4 bits (155), Expect = 4e-14
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
          +PR  R+ +E +        G +       +    R +   I GP  T +EG  Y+L+LF
Sbjct: 2  IPR--RITKETQNLANEPPPG-IMAVPVPEN---YRHFNILINGPDGTPYEGGTYKLELF 55

Query: 72 CDKDYPEKPPSVRFHSRI 89
            + YP +PP VRF ++I
Sbjct: 56 LPEQYPMEPPKVRFLTKI 73

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 63.5 bits (155), Expect = 4e-14
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 40 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI
Sbjct: 44 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 91

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 63.0 bits (154), Expect = 5e-14
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+ +EL+   +       S G    D   +  W  TI+GP  + ++G ++ L +    DY
Sbjct: 8  RIQKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63

Query: 77 PEKPPSVRFHSRI 89
          P KPP V F +RI
Sbjct: 64 PFKPPKVAFTTRI 76

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 63.2 bits (154), Expect = 6e-14
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           L  +L    K   +G  S G+ D +D+Y   W   IIGP +T++EG +++  L   KDY
Sbjct: 21 LLRRQLAELNKNPVEG-FSAGLIDDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDY 77

Query: 77 PEKPPSVRFHSRI 89
          P +PP ++F + I
Sbjct: 78 PLRPPKMKFITEI 90

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 62.3 bits (152), Expect = 8e-14
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+++E++  +       ++       DI+     GT +GP  T +EG  + + +    +Y
Sbjct: 5  RIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 77 PEKPPSVRFHSRI 89
          P KPP ++F +++
Sbjct: 62 PFKPPKMQFDTKV 74

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 62.8 bits (153), Expect = 9e-14
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL  EL         G ++   D      M      I+G  NT +E  +++L++   + Y
Sbjct: 8  RLKRELHMLATEPPPG-ITCWQDKDQ---MDDLRAQILGGANTPYEKGVFKLEVIIPERY 63

Query: 77 PEKPPSVRFHSRI 89
          P +PP +RF + I
Sbjct: 64 PFEPPQIRFLTPI 76

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 62.9 bits (153), Expect = 1e-13
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 40 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
             +I    W   + GP  T +EG  Y  KL   +++P KPPS+   +  
Sbjct: 39 LPSNIL--EWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPN 86

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 19/99 (19%)

Query: 17  RLLEELERGEKGIGDG----------TVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIY 66
           R+++E +   K +               S    D  D+    W   I GP +T +E   +
Sbjct: 10  RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLS--KWEAIISGPSDTPYENHQF 67

Query: 67  QLKLFCDKDYPEKPPSVRF-HSRI---NMTCVNHETGVV 101
           ++ +     YP  PP + F  + I   N   V   TG +
Sbjct: 68  RILIEVPSSYPMNPPKISFMQNNILHCN---VKSATGEI 103

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RLL+EL++  K    G +  G    ++I+   W   I GP +T +   ++  KL   KDY
Sbjct: 8  RLLKELQQLIKDSPPG-IVAGPKSENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDY 64

Query: 77 PEKPPSVRFHSRI 89
          P  PP + F   I
Sbjct: 65 PLSPPKLTFTPSI 77

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           R+++E++  +       ++       DI+     GT +GP  T +EG  + + +    +Y
Sbjct: 6   RIMKEIQAVKDDPAAH-ITLEFVSESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62

Query: 77  PEKPPSVRFHSRINMTCVNHETGVV 101
           P KPP ++F +++    ++  TG +
Sbjct: 63  PFKPPKMQFDTKVYHPNISSVTGAI 87

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 14/88 (15%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           R+  ++ +  +   + T+         +    +     GP  T +EG ++++++     Y
Sbjct: 29  RMDTDVIKLIESKHEVTIL------GGLN--EFVVKFYGPQGTPYEGGVWKVRVDLPDKY 80

Query: 77  PEKPPSVRFHSRI---NMTCVNHETGVV 101
           P K PS+ F ++I   N   ++  +G V
Sbjct: 81  PFKSPSIGFMNKIFHPN---IDEASGTV 105

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 60.8 bits (148), Expect = 4e-13
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 4  GSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEG 63
           S  +  V  R+  L++E+   E  +          D + ++        + P    ++G
Sbjct: 5  ASDSTRRVSVRDKLLVKEVAELEANLPCT-CKVHFPDPNKLH---CFQLTVTPDEGYYQG 60

Query: 64 RIYQLKLFCDKDYPEKPPSVRFHSRI 89
            +Q +      Y   PP V+  ++I
Sbjct: 61 GKFQFETEVPDAYNMVPPKVKCLTKI 86

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 14/73 (19%), Positives = 23/73 (31%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           RL  +L+  +             D  D         I+ P    +        L  ++ Y
Sbjct: 33  RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVY 92

Query: 77  PEKPPSVRFHSRI 89
           P +PP V    +I
Sbjct: 93  PIEPPKVVCLKKI 105

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 40 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
           GDD++   W  TI+GP+++ ++G ++ L +    DYP KPP V F +RI
Sbjct: 28 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 75

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 59.7 bits (145), Expect = 2e-12
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 5  SGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR 64
           G S        R+ +++          T      D DD+   ++   I  P    ++  
Sbjct: 18 KGSSKKASAAQLRIQKDINELNL---PKTCDISFSDPDDLL--NFKLVI-CPDEGFYKSG 71

Query: 65 IYQLKLFCDKDYPEKPPSVRFHSRI 89
           +       + YP  PP V+  + +
Sbjct: 72 KFVFSFKVGQGYPHDPPKVKCETMV 96

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 15/80 (18%), Positives = 30/80 (37%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           RL +E       +   + S      D+  +      I GP +T +    ++  ++  +DY
Sbjct: 80  RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDY 139

Query: 77  PEKPPSVRFHSRINMTCVNH 96
           P  PP V   +    +   +
Sbjct: 140 PSSPPLVNLETTGGHSVRFN 159

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 58.6 bits (142), Expect = 3e-12
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 14/96 (14%)

Query: 6  GGSSVVVPRNFRLLEELERGEKGIGDG----------TVSYGMDDGDDIYMRSWTGTIIG 55
          G  S+    N R++++L+   + +             + +    D D IY  +W   +  
Sbjct: 1  GPGSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIY--NWILKVKA 58

Query: 56 PHNTV--HEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
          P ++V    G  YQL +    DYP +PP+VRF + +
Sbjct: 59 PADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV 94

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+ +++          T      D DD+   ++   I  P    ++   +       + Y
Sbjct: 10 RIQKDINELNL---PKTCDISFSDPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGY 63

Query: 77 PEKPPSVRFHSRI 89
          P  PP V+  + +
Sbjct: 64 PHDPPKVKCETMV 76

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 55.3 bits (134), Expect = 4e-11
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL++ELE   K            D  ++   +W G I  P N  ++   +++++    +Y
Sbjct: 6  RLMKELEEIRKCGMKN-FRNIQVDEANLL--TWQGLI-VPDNPPYDKGAFRIEINFPAEY 61

Query: 77 PEKPPSVRFHSRI 89
          P KPP + F ++I
Sbjct: 62 PFKPPKITFKTKI 74

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          R+++ELE  +K      +     D  ++    W   +  P    +  + + L++    +Y
Sbjct: 8  RVVKELEDLQKKPPPY-LRNLSSDDANVL--VWHALL-LPDQPPYHLKAFNLRISFPPEY 63

Query: 77 PEKPPSVRFHSRI 89
          P KPP ++F ++I
Sbjct: 64 PFKPPMIKFTTKI 76

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 17/100 (17%)

Query: 4   GSGGSSVVVPRNFRLLEELE--RGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGP----- 56
           GSG  S  V  + RL++EL      +    G  S  + + D +Y   W   +        
Sbjct: 18  GSGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELIN-DSLY--DWHVKLQKVDPDSP 74

Query: 57  -------HNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89
                             L      ++P  PP VR    +
Sbjct: 75  LHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPV 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	99.98
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.98
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.97
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	99.97
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.91
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.73
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.49
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.25
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	97.12
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	96.57
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	96.12
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	96.11
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	94.77
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	92.1
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	91.89

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=6.8e-38  Score=218.56  Aligned_cols=111  Identities=51%  Similarity=0.885  Sum_probs=96.4

Q ss_pred             CCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEE
Q 033475            6 GGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF   85 (118)
Q Consensus         6 ~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   85 (118)
                      +++++.++|.|||+||++++++++++|++++.+++++|+++++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus        18 ~~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F   97 (160)
T 2a4d_A           18 GSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRF   97 (160)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred             cCCeeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEE
Confidence            34557788999999999999999988876776656665225699999999999999999999999999999999999999


Q ss_pred             eccceeccccCCCceEE-eCCC--CCCcccEEec
Q 033475           86 HSRINMTCVNHETGVVL-FLFD--LNSVHLVFLA  116 (118)
Q Consensus        86 ~t~i~HPnV~~~~g~~c-~~L~--~~w~~~~~~~  116 (118)
                      .|++|||||+..+|.+| ++|+  ++|+|.+++.
T Consensus        98 ~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~  131 (160)
T 2a4d_A           98 VTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIK  131 (160)
T ss_dssp             SBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHH
T ss_pred             ecCceeCCEECCCCEEehhhcCCccCCCccCcHH
Confidence            99999999996578888 9998  9999998764

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7e-37  Score=212.98  Aligned_cols=107  Identities=21%  Similarity=0.256  Sum_probs=93.4

Q ss_pred             CCCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEE
Q 033475            5 SGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVR   84 (118)
Q Consensus         5 ~~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   84 (118)
                      +++.+++..+.+||++|++++++++++|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus         5 ~~~~~~s~~~~~RL~kEl~~l~~~~~~gi-~~~-~~~~~--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~   80 (158)
T 1zdn_A            5 SNVENLPPHIIRLVYKEVTTLTADPPDGI-KVF-PNEED--LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGY   80 (158)
T ss_dssp             ---CCSCHHHHHHHHHHHHHHHHSCCTTE-EEE-ECSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             ccccccCHHHHHHHHHHHHHHHhCCCCCE-EEE-ECCCC--hhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEE
Confidence            35566777889999999999999999995 444 46677  559999999999999999999999999999999999999


Q ss_pred             EeccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           85 FHSRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        85 f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |.|++|||||+. +|.|| ++|+++|.|.+++.
T Consensus        81 f~t~i~HPnv~~-~G~iCl~iL~~~W~p~~~i~  112 (158)
T 1zdn_A           81 FLTKIFHPNVGA-NGEICVNVLKRDWTAELGIR  112 (158)
T ss_dssp             ESSCCCCTTBCT-TSBBCHHHHTTTCCTTCCHH
T ss_pred             eccCcccCCCCC-CCEEehhhcCCCCCCCCcHH
Confidence            999999999996 58777 99999999987654

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=4e-37  Score=216.57  Aligned_cols=110  Identities=51%  Similarity=0.862  Sum_probs=96.2

Q ss_pred             CccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEe
Q 033475            7 GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFH   86 (118)
Q Consensus         7 ~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   86 (118)
                      ++.+.++|.+||+||++++++++++|++++.+.+++|+++++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus        29 ~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~  108 (170)
T 2hlw_A           29 CKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFV  108 (170)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEEC
T ss_pred             CCcccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEe
Confidence            33456789999999999999999888777766566542255999999999999999999999999999999999999999


Q ss_pred             ccceeccccCCCceEE-eCCC--CCCcccEEec
Q 033475           87 SRINMTCVNHETGVVL-FLFD--LNSVHLVFLA  116 (118)
Q Consensus        87 t~i~HPnV~~~~g~~c-~~L~--~~w~~~~~~~  116 (118)
                      |+||||||+..+|.|| ++|+  ++|+|.+++.
T Consensus       109 T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~  141 (170)
T 2hlw_A          109 TKINMNGVNSSNGVVDPRAISVLAKWQNSYSIK  141 (170)
T ss_dssp             BCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHH
T ss_pred             cccccCCEeCCCCEEEhhhcCCCCCCCccCcHH
Confidence            9999999996678888 9998  9999998764

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-36  Score=205.66  Aligned_cols=99  Identities=19%  Similarity=0.222  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce--ec
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN--MT   92 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HP   92 (118)
                      .+||+||++++++++++|+.....++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|  ||
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HP  101 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSVQNS--ITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP  101 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCS--CEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeCccc--cceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCc
Confidence            48999999999999998853212356778  669999999999999999999999999999999999999999999  99


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+. +|.|| ++|+++|+|.+++.
T Consensus       102 NV~~-~G~ICL~iL~~~WsP~~ti~  125 (136)
T 2a7l_A          102 HVYS-NGHICLSILTEDWSPALSVQ  125 (136)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTSCHH
T ss_pred             cCCC-CCeEEchhcCCCCCCCCcHH
Confidence            9995 77777 99999999998764

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4e-36  Score=210.32  Aligned_cols=101  Identities=25%  Similarity=0.340  Sum_probs=89.9

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.+||++|+++|++++++|+ .+.+.+++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~gi-~~~~~~~~~--l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (165)
T 2ucz_A            3 KTAQKRLLKELQQLIKDSPPGI-VAGPKSENN--IFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTE-EEEESSSSC--CSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCE-EEEECCCCC--ccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence            4578899999999999999885 555556667  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCC-------------CCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLF-------------DLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L-------------~~~w~~~~~~~  116 (118)
                      |||+. +|.|| ++|             .++|+|.+++.
T Consensus        80 PNv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~  117 (165)
T 2ucz_A           80 PNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVE  117 (165)
T ss_dssp             TTBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHH
T ss_pred             CCCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHH
Confidence            99996 67777 999             68999998753

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4.3e-36  Score=211.12  Aligned_cols=100  Identities=27%  Similarity=0.418  Sum_probs=89.7

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.+||++|+++|++++++|+. +. +.++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~gi~-~~-p~~~n--l~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H   78 (169)
T 1ayz_A            3 TPARRRLMRDFKRMKEDAPPGVS-AS-PLPDN--VMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   78 (169)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEE-EE-EETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEE-EE-ecCCc--cccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence            35678999999999999999964 33 34667  6799999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.|| ++|+++|+|.+++.
T Consensus        79 PNI~~-~G~ICl~iL~~~WsP~~~i~  103 (169)
T 1ayz_A           79 PNVYA-NGEICLDILQNRWTPTYDVA  103 (169)
T ss_dssp             TTBCT-TSBBCCGGGTTTCCTTCCHH
T ss_pred             CCCCC-CCeEeehhhccCCCCcCcHH
Confidence            99996 77777 99999999998764

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=3.9e-36  Score=208.78  Aligned_cols=100  Identities=29%  Similarity=0.366  Sum_probs=89.2

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.+||++|++++++++++|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i-~~~-p~~~~--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   83 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGI-TAF-PDGDN--LFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWH   83 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTE-EEE-ESSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCE-EEE-ECCCC--ccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCccc
Confidence            4567899999999999988885 444 35667  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.|| ++|.++|.|.+++.
T Consensus        84 Pnv~~-~G~iCl~iL~~~W~p~~~i~  108 (156)
T 2e2c_A           84 PNVDQ-SGNICLDILKENWTASYDVR  108 (156)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             CCCcc-CceEECccccccCCCCCcHH
Confidence            99996 67777 99999999998764

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=3.7e-36  Score=202.20  Aligned_cols=98  Identities=24%  Similarity=0.376  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc-eec
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMT   92 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP   92 (118)
                      +.+||++|+++++++++.|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus         7 a~~RL~kEl~~l~~~~~~~~-~~~-~~~~~--l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP   82 (125)
T 2fo3_A            7 ANYRIQKELHNFLNNPPINC-TLD-VHPNN--IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHT   82 (125)
T ss_dssp             --CHHHHHHHHHHHSCCTTE-EEE-ECTTC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBT
T ss_pred             HHHHHHHHHHHHHhCCCCCE-EEE-eCcch--hhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCC
Confidence            46799999999999998884 544 36678  55999999999999999999999999999999999999999997 999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++|+++|+|.+++.
T Consensus        83 nv~~-~G~iCl~iL~~~W~P~~~i~  106 (125)
T 2fo3_A           83 HVYS-NGDICLSLLGDDYNPSLSIS  106 (125)
T ss_dssp             TBCT-TSBBCCGGGTTTCCTTCCHH
T ss_pred             cCCC-CCEEEchhcCCCCCCCCcHH
Confidence            9995 77777 99999999998764

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=6.2e-36  Score=209.76  Aligned_cols=107  Identities=26%  Similarity=0.397  Sum_probs=90.7

Q ss_pred             CCCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEE
Q 033475            5 SGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVR   84 (118)
Q Consensus         5 ~~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   84 (118)
                      .........+.+||++|+++++++++.|+ .+.+ +++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+
T Consensus        13 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi-~~~~-~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~   88 (166)
T 2ayv_A           13 GRENLYFQGALKRINKELNDLSKDPPTNC-SAGP-VGDD--MFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVN   88 (166)
T ss_dssp             ------CTTHHHHHHHHHHHHHHSCCTTE-EEEE-CSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             ccccccCcHHHHHHHHHHHHHHhCCCCCE-EEEE-cCCC--cceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceee
Confidence            33445556689999999999999999885 5543 5667  559999999999999999999999999999999999999


Q ss_pred             EeccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           85 FHSRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        85 f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |.|++|||||+. +|.|| ++|+++|+|.+++.
T Consensus        89 F~T~i~HPNI~~-~G~ICL~iL~~~WsP~~ti~  120 (166)
T 2ayv_A           89 FTTKIYHPNINS-QGAICLDILKDQWSPALTIS  120 (166)
T ss_dssp             ECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             eccCCcCCcCCC-CCeEEcccccccCCCCCcHH
Confidence            999999999995 67777 99999999998754

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=4.1e-36  Score=205.03  Aligned_cols=103  Identities=50%  Similarity=0.898  Sum_probs=85.8

Q ss_pred             chHHHHHHHHHHHhHcC-CCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475           12 VPRNFRLLEELERGEKG-IGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN   90 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~-~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   90 (118)
                      .+|.+||+||+++++++ ++.+ +.+.+.++++.++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~-~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   83 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPES-CSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN   83 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CC-EEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCC-EEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccc
Confidence            56789999999999998 6667 565554443311569999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceE--E-eCCCCCCcccEEec
Q 033475           91 MTCVNHETGVV--L-FLFDLNSVHLVFLA  116 (118)
Q Consensus        91 HPnV~~~~g~~--c-~~L~~~w~~~~~~~  116 (118)
                      ||||+.++|.|  | ++|+ +|+|.+++.
T Consensus        84 HPnv~~~~G~i~~cL~~l~-~W~p~~~i~  111 (138)
T 1jat_B           84 LPCVNPTTGEVQTDFHTLR-DWKRAYTME  111 (138)
T ss_dssp             CTTBCTTTCBBCTTSHHHH-TCCTTCCHH
T ss_pred             cCCEeCCCCEEeeecccCC-CCCCcCcHH
Confidence            99999876887  5 7776 899998764

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=2.2e-36  Score=208.55  Aligned_cols=100  Identities=20%  Similarity=0.377  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      +.+||++|+++++++++.|+ .+.+.+++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~~RL~~El~~l~~~~~~~i-~~~~~~~~~--l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHI-TLEFVSESD--IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCC-EEEESSSSC--SSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHhCCCCCE-EEEECCCCC--ceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence            46899999999999998885 555544547  569999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCCCCCcccEEec
Q 033475           94 VNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        94 V~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |+..+|.+| ++|+++|+|.+++.
T Consensus        79 i~~~~G~iCl~iL~~~W~p~~~i~  102 (149)
T 1fxt_A           79 ISSVTGAICLDILKNAWSPVITLK  102 (149)
T ss_dssp             BCSSSCCBCCHHHHTSCCTTCCHH
T ss_pred             CcCCCCeEeCCcCCCCCCCCCcHH
Confidence            996477777 99999999998754

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.1e-35  Score=208.28  Aligned_cols=107  Identities=28%  Similarity=0.409  Sum_probs=91.1

Q ss_pred             CCCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEE
Q 033475            5 SGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVR   84 (118)
Q Consensus         5 ~~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   84 (118)
                      ++-......+.+||++|+++++++++.|+ .+.+ +++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus        11 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi-~~~p-~~~n--l~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~   86 (165)
T 2c4o_A           11 SGLVPRGSMALKRIHKELNDLARDPPAQC-SAGP-VGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA   86 (165)
T ss_dssp             -----CCHHHHHHHHHHHHHHHSSCCTTE-EEEE-SSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             cccccCCcHHHHHHHHHHHHHHhCCCCCE-EEEE-cCCC--cceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEE
Confidence            34444556688999999999999999885 5543 5567  559999999999999999999999999999999999999


Q ss_pred             EeccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           85 FHSRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        85 f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |.|+||||||+. +|.|| ++|+++|+|.+++.
T Consensus        87 F~T~i~HPnV~~-~G~ICl~iL~~~W~P~~ti~  118 (165)
T 2c4o_A           87 FTTRIYHPNINS-NGSICLDILRSQWSPALTIS  118 (165)
T ss_dssp             ECSCCCBTTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             EecCCcCCcCCC-CCeEeehhhcCCCCCcCcHH
Confidence            999999999996 77777 99999999998754

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.2e-35  Score=207.77  Aligned_cols=100  Identities=21%  Similarity=0.316  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.|||++|++++++++++|+ .+...+++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         3 ~a~~RL~kEl~~l~~~~~~gi-~~~~~~~~n--l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (164)
T 3h8k_A            3 TALKRLMAEYKQLTLNPPEGI-VAGPMNEEN--FFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHP   79 (164)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTE-EEEESSTTC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCE-EEEECCCCC--ccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccC
Confidence            468899999999999999995 555555657  55999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCC-------------CCCcccEEec
Q 033475           93 CVNHETGVVL-FLFD-------------LNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~-------------~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++|+             ++|+|.+++.
T Consensus        80 NV~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~  116 (164)
T 3h8k_A           80 NIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVE  116 (164)
T ss_dssp             TBCT-TSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHH
T ss_pred             CCCC-CCcEeeecccCcccccccccccccCCCCCCcHH
Confidence            9995 77777 9997             8999998754

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=9.4e-36  Score=206.03  Aligned_cols=100  Identities=27%  Similarity=0.491  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      .++.+||++|++++++++++|+ .+. ++++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         3 ~~a~~RL~~E~~~l~~~~~~~i-~~~-~~~~~--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (152)
T 2aak_A            3 TPARKRLMRDFKRLQQDPPAGI-SGA-PQDNN--IMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH   78 (152)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTE-EEE-EETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCE-EEE-eCCCC--ccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            4567899999999999999995 443 35667  6799999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.+| ++|.++|+|.+++.
T Consensus        79 Pnv~~-~G~iCl~iL~~~W~p~~~i~  103 (152)
T 2aak_A           79 PNIYA-DGSICLDILQNQWSPIYDVA  103 (152)
T ss_dssp             TTBCT-TSBBCCGGGTTSCCTTCCHH
T ss_pred             CCCCC-CCEEechhhcCCCCCCCcHH
Confidence            99996 78777 99999999998754

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=9.9e-36  Score=206.91  Aligned_cols=108  Identities=44%  Similarity=0.883  Sum_probs=91.4

Q ss_pred             CCccccchHHHHHHHHHHHhHcC-CCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEE
Q 033475            6 GGSSVVVPRNFRLLEELERGEKG-IGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVR   84 (118)
Q Consensus         6 ~~s~~~~~~~kRl~kEl~~l~~~-~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   84 (118)
                      ++..++++|.+||+||+++++++ ++.+ +++.+.++++.+++.|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus        14 ~~~~~~~~~~~RL~kEl~~l~~~~~~~~-i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~   92 (156)
T 2q0v_A           14 LYFQGIVPRSFRLLDELERGQKGNVSEG-VSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVK   92 (156)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHCC-CCTT-EEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             cCCcccchHHHHHHHHHHHHHhCCCCCC-eEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEE
Confidence            35567788999999999999998 6666 566655433211569999999999999999999999999999999999999


Q ss_pred             EeccceeccccCCCceE---E-eCCCCCCcccEEec
Q 033475           85 FHSRINMTCVNHETGVV---L-FLFDLNSVHLVFLA  116 (118)
Q Consensus        85 f~t~i~HPnV~~~~g~~---c-~~L~~~w~~~~~~~  116 (118)
                      |.|+||||||+. +|.+   | ++|+ +|+|.+++.
T Consensus        93 F~t~i~HPNV~~-~G~icisCL~iL~-~WsP~~ti~  126 (156)
T 2q0v_A           93 FDTKIEMSCVDN-CGRVIKNNLHILK-NWNRNYTIE  126 (156)
T ss_dssp             ESBCCCCTTBCT-TSBBCGGGSHHHH-TCCTTCCHH
T ss_pred             EEcccccCCCcc-CCeEehhhccccc-CCCCcCcHH
Confidence            999999999996 4766   6 8887 599998764

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.5e-35  Score=200.79  Aligned_cols=99  Identities=22%  Similarity=0.351  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc-ee
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NM   91 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H   91 (118)
                      .+.+||++|+++++++++.|+ .+. ++++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus        20 ~~~~RL~kEl~~l~~~~~~~~-~~~-~~~~n--l~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   95 (136)
T 2h2y_A           20 NANYRIQKELNNFLKNPPINC-TID-VHPSN--IRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKH   95 (136)
T ss_dssp             SHHHHHHHHHHHHHHSCCTTE-EEE-ECTTC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCe-EEE-ecccc--ccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCC
Confidence            468999999999999998884 554 35678  55999999999999999999999999999999999999999996 99


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.+| ++|+++|+|.+++.
T Consensus        96 Pnv~~-~G~ICl~iL~~~WsP~~ti~  120 (136)
T 2h2y_A           96 THVYS-NGDICLSVLGDDYNPSLSIS  120 (136)
T ss_dssp             TTBCT-TCCBCCGGGTTTCCTTCCHH
T ss_pred             CcCCC-CCEEECccccCCCCCCCcHH
Confidence            99996 77777 99999999998764

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.3e-36  Score=211.62  Aligned_cols=102  Identities=26%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      ++..+.+||++|++++++++++|+ .+. ++++|  ++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi-~~~-p~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i  102 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGI-SAF-PESDN--LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC  102 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTE-EEE-EETTE--EEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCE-EEE-EcCCc--ccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCC
Confidence            456688999999999999988885 444 35667  67999999999999999999999999999999999999999999


Q ss_pred             eeccccCCCceEE-eCCCCCCcccEEec
Q 033475           90 NMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        90 ~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||||+. +|.|| ++|+++|.|.+++.
T Consensus       103 ~HPNV~~-~G~ICL~iL~~~WsP~~ti~  129 (179)
T 1i7k_A          103 YHPNVDT-QGNISLDILKEKWSALYDVR  129 (179)
T ss_dssp             CSTTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             ccCcccc-CCeEEcccCcCcCCCCCCHH
Confidence            9999996 67777 99999999998764

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-35  Score=207.11  Aligned_cols=103  Identities=23%  Similarity=0.346  Sum_probs=89.1

Q ss_pred             cchHHHHHHHHHHHhHcCCCCCceEEeccCCC---CcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEec
Q 033475           11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGD---DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   87 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~---n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   87 (118)
                      +..+.+||+||++++++++++|+.+....++|   |  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~n--l~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLD--LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCC--ccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence            35677899999999999999997554332222   6  779999999999999999999999999999999999999999


Q ss_pred             cceeccccCCCceEE-eCCCCC--CcccEEec
Q 033475           88 RINMTCVNHETGVVL-FLFDLN--SVHLVFLA  116 (118)
Q Consensus        88 ~i~HPnV~~~~g~~c-~~L~~~--w~~~~~~~  116 (118)
                      ++|||||+. +|.+| ++|+.+  |+|.+++.
T Consensus        86 ~i~HPnV~~-~G~iCl~iL~~~~~W~p~~ti~  116 (163)
T 3rcz_B           86 PLFHPNVYP-SGTVCLSILNEEEGWKPAITIK  116 (163)
T ss_dssp             CCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHH
T ss_pred             CCccCCCCC-CCcEeccccCCCCCcCCcCcHH
Confidence            999999994 77777 999876  99998764

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.8e-35  Score=204.40  Aligned_cols=100  Identities=27%  Similarity=0.408  Sum_probs=89.4

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.|||++|+++++++++.|+ .+.+ .++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~~i-~~~p-~~~n--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (151)
T 4gpr_A            3 AMAMRRIQKELREIQQDPPCNC-SAGP-VGDD--IFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYH   78 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTE-EEEE-SSSC--TTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCE-EEEE-cCCC--ceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCccc
Confidence            4568899999999999999885 5543 4567  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.+| ++|+++|.|.+++.
T Consensus        79 Pnv~~-~G~iCl~iL~~~W~p~~~i~  103 (151)
T 4gpr_A           79 PNINK-NGVICLDILKDQWSPALTLS  103 (151)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             ceECC-CCEEEcccccCCCCCCCcHH
Confidence            99995 77777 99999999998754

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=2.3e-35  Score=207.90  Aligned_cols=103  Identities=28%  Similarity=0.455  Sum_probs=90.6

Q ss_pred             ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      .+..+.|||+||+++|++++++|+ .+.+.+++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++
T Consensus        14 ~~~~~~~rL~kEl~~l~~~~~~gi-~~~p~~~~n--l~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i   90 (172)
T 2awf_A           14 LVPRGSLLLRRQLAELNKNPVEGF-SAGLIDDND--LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI   90 (172)
T ss_dssp             CCCTTHHHHHHHHHHHHHSCCTTE-EEEESSTTC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCE-EEEECCCcc--ccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence            345678899999999999999884 555556678  55999999999999999999999999999999999999999999


Q ss_pred             eeccccCCCceEE-eCCC-------------CCCcccEEec
Q 033475           90 NMTCVNHETGVVL-FLFD-------------LNSVHLVFLA  116 (118)
Q Consensus        90 ~HPnV~~~~g~~c-~~L~-------------~~w~~~~~~~  116 (118)
                      |||||+. +|.|| ++|.             ++|+|.+++.
T Consensus        91 ~HPNV~~-~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~  130 (172)
T 2awf_A           91 WHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVE  130 (172)
T ss_dssp             CCTTBCT-TCBBCCGGGSCC---------CTTSCCTTCCHH
T ss_pred             ccCCCCC-CCcEehhhcCCcccccccccccCCCCCCcCcHH
Confidence            9999996 57777 9997             6899998754

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=2e-35  Score=204.01  Aligned_cols=99  Identities=27%  Similarity=0.434  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.+||++|++++++++++|+ .+.+ +++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~~-~~~~-~~~~--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (150)
T 1z2u_A            4 MALKRIQKELQDLGRDPPAQC-SAGP-VGDD--LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   79 (150)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSE-EEEE-ETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHhCCCCCE-EEEE-CCCc--ceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccC
Confidence            467899999999999999885 5443 4567  67999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++|+++|+|.+++.
T Consensus        80 nv~~-~G~iCl~iL~~~W~p~~~i~  103 (150)
T 1z2u_A           80 NINS-NGSICLDILRSQWSPALTIS  103 (150)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             cCCC-CCeEeeccccCCCCCCCCHH
Confidence            9996 67777 99999999998764

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=2.9e-35  Score=209.14  Aligned_cols=101  Identities=26%  Similarity=0.345  Sum_probs=90.0

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.|||++|++++++++++|+ .+.+++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         6 ~~a~kRL~kEl~~l~~~~~~gi-~~~~~~~~n--l~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (183)
T 3rz3_A            6 PSSQKALLLELKGLQEEPVEGF-RVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH   82 (183)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTE-EEEECTTCC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCE-EEEecCccc--hhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence            4578899999999999999995 555567788  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCC-------------CCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFD-------------LNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~-------------~~w~~~~~~~  116 (118)
                      |||+. +|.+| ++|.             ++|+|.+++.
T Consensus        83 PnV~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~  120 (183)
T 3rz3_A           83 PNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVR  120 (183)
T ss_dssp             TTBCT-TSBBCCTTC--------------CCCCTTCCHH
T ss_pred             CCCCC-CCcEehhhcCcccccccccccccCCCCCcCcHH
Confidence            99996 77777 9997             8999988754

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.2e-35  Score=206.04  Aligned_cols=99  Identities=24%  Similarity=0.382  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.+||++|++++++++++|+ .+. ++++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i-~~~-~~~~~--l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   80 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGI-TAE-PHDDN--LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP   80 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTE-EEE-EETTE--EEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             HHHHHHHHHHHHHHhCCCCCE-EEE-ECCCc--hhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccC
Confidence            346899999999999998885 444 35567  67999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+ .+|.+| ++|+++|+|.+++.
T Consensus        81 nv~-~~G~iCl~iL~~~W~p~~~i~  104 (155)
T 1jat_A           81 NID-RLGRICLDVLKTNWSPALQIR  104 (155)
T ss_dssp             TBC-TTCCBCCGGGTTTCCTTCCHH
T ss_pred             CCC-CCCEEEchhhccCCCCCCCHH
Confidence            999 577777 99999999998764

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=1.4e-35  Score=207.99  Aligned_cols=109  Identities=18%  Similarity=0.213  Sum_probs=93.4

Q ss_pred             CCCCCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCE
Q 033475            3 LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPS   82 (118)
Q Consensus         3 ~~~~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~   82 (118)
                      +.+.+++.+..|.|||++|++++++++++| +.+.+++++|  ++.|.++| ||++|||+||.|+++|.||++||++||+
T Consensus         4 ~~~~~~~~~s~~~~RL~kEl~~l~~~~~~g-i~~~~~~~~~--l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~   79 (167)
T 3fn1_B            4 TASDSTRRVSVRDKLLVKEVAELEANLPCT-CKVHFPDPNK--LHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPK   79 (167)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHGGGSCTT-EEEECSSSSC--TTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCE
T ss_pred             ccCCCccchhHHHHHHHHHHHHHHhCCCCC-EEEEeCCCCc--ceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCe
Confidence            345666778889999999999999999999 4666566777  55999998 8999999999999999999999999999


Q ss_pred             EEEeccceeccccCCCceEE-eCCCC------CCcccEEec
Q 033475           83 VRFHSRINMTCVNHETGVVL-FLFDL------NSVHLVFLA  116 (118)
Q Consensus        83 v~f~t~i~HPnV~~~~g~~c-~~L~~------~w~~~~~~~  116 (118)
                      |+|.|++|||||+. +|.+| ++|+.      +|+|.+++.
T Consensus        80 v~f~t~i~HPnv~~-~G~iCl~iL~~~~~~~~~W~p~~~i~  119 (167)
T 3fn1_B           80 VKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAPTRTLK  119 (167)
T ss_dssp             EEECSCCCCSSBCT-TCCBCCGGGSBCSSSTTSBCTTCCHH
T ss_pred             eEecCCcccCCCCC-CCEEechhhccCCCCCCCCCCcCcHH
Confidence            99999999999995 77777 99986      799987754

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=2.7e-35  Score=205.12  Aligned_cols=103  Identities=23%  Similarity=0.334  Sum_probs=89.4

Q ss_pred             ccchHHHHHHHHHHHhHcC---CCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEe
Q 033475           10 VVVPRNFRLLEELERGEKG---IGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFH   86 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~~---~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   86 (118)
                      ++..+.+||+||+++|+++   ++.| +.+.+ .++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~-i~~~~-~~~~--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   80 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQ-IKVDL-VDEN--FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI   80 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTS-EEEEE-CSSS--SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCC-EEEEe-CCCc--hheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEee
Confidence            3445789999999999985   4567 45554 4557  56999999999999999999999999999999999999999


Q ss_pred             ccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           87 SRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        87 t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |++|||||+..+|.+| ++|+++|+|.+++.
T Consensus        81 t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~  111 (159)
T 2bep_A           81 TKIWHPNISSVTGAICLDILKDQWAAAMTLR  111 (159)
T ss_dssp             SCCCBTTBCTTTCBBCCGGGTTTCCTTCCHH
T ss_pred             CCCCccCCCCCCCEEeChhhhccCCCCCcHH
Confidence            9999999996578888 99999999998754

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=2.9e-35  Score=205.39  Aligned_cols=105  Identities=21%  Similarity=0.329  Sum_probs=90.4

Q ss_pred             cccchHHHHHHHHHHHhHcCCCCCceEEeccC---CCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEE
Q 033475            9 SVVVPRNFRLLEELERGEKGIGDGTVSYGMDD---GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF   85 (118)
Q Consensus         9 ~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~---~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   85 (118)
                      .++..+.+||++|++++++++++|+.+....+   ++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus         3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~n--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f   80 (161)
T 2grr_A            3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMN--LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKF   80 (161)
T ss_dssp             -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC--ccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEE
Confidence            34556789999999999999999975543321   246  6799999999999999999999999999999999999999


Q ss_pred             eccceeccccCCCceEE-eCCCC--CCcccEEec
Q 033475           86 HSRINMTCVNHETGVVL-FLFDL--NSVHLVFLA  116 (118)
Q Consensus        86 ~t~i~HPnV~~~~g~~c-~~L~~--~w~~~~~~~  116 (118)
                      .|++|||||+. +|.+| ++|+.  +|.|.+++.
T Consensus        81 ~t~i~HPnv~~-~G~iCl~iL~~~~~W~p~~~i~  113 (161)
T 2grr_A           81 EPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIK  113 (161)
T ss_dssp             SSCCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHH
T ss_pred             ecCcccCCCCC-CCeEeehhcCCCCCcCCCCcHH
Confidence            99999999995 78777 99987  899998654

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.3e-35  Score=207.33  Aligned_cols=100  Identities=24%  Similarity=0.330  Sum_probs=89.6

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.+||++|+++++++++.|+ .+. ++++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~gi-~~~-~~~~~--l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (169)
T 1yh2_A            3 MQRASRLKRELHMLATEPPPGI-TCW-QDKDQ--MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYH   78 (169)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTE-EEE-ESSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCE-EEE-eCCCc--hheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcc
Confidence            4678999999999999999885 444 45677  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCC----CCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFD----LNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~----~~w~~~~~~~  116 (118)
                      |||+. +|.|| ++|+    ++|+|.+++.
T Consensus        79 PNv~~-~G~iCl~iL~~~~~~~W~p~~~i~  107 (169)
T 1yh2_A           79 PNIDS-AGRICLDVLKLPPKGAWRPSLNIA  107 (169)
T ss_dssp             TTBCT-TCBBCCGGGSCTTTSCCCTTSCHH
T ss_pred             ccCCc-CCeEecccccCCcccCCCCCCcHH
Confidence            99994 67777 9999    9999998754

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.1e-35  Score=204.73  Aligned_cols=99  Identities=23%  Similarity=0.346  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.+||++|++++++++++|+ .+.+ +++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i-~~~~-~~~~--l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   80 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGI-KAEP-DESN--ARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHP   80 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTE-EEEE-CSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCE-EEEE-CCCc--hheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccC
Confidence            345799999999999999885 5443 5567  55999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++|+++|+|.+++.
T Consensus        81 nv~~-~G~iCl~iL~~~W~p~~~i~  104 (154)
T 2c2v_B           81 NVDK-LGRICLDILKDKWSPALQIR  104 (154)
T ss_dssp             TBCT-TCBBCCHHHHTSCCTTCCHH
T ss_pred             cCcc-CCeEEchhccCCCCCCCcHH
Confidence            9995 67777 99999999988764

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.9e-35  Score=210.72  Aligned_cols=102  Identities=27%  Similarity=0.451  Sum_probs=87.0

Q ss_pred             cchHHHHHHHHHHHhHcCCC-------------CCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCC
Q 033475           11 VVPRNFRLLEELERGEKGIG-------------DGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP   77 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~~-------------~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP   77 (118)
                      +..+.|||+||+++|+++++             .| +.+.+ .++|  ++.|+++|.||++|||+||.|+|+|.||++||
T Consensus        30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~g-i~v~~-~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP  105 (193)
T 2f4z_A           30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHG-VSAQI-VGGD--IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYP  105 (193)
T ss_dssp             --CHHHHHHHHHHHHHHC----------------C-EEEEE-ETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred             CCHHHHHHHHHHHHHHhCCCccccccccccCCCCc-EEEEE-cCCC--cceEEEEEeCCCCCCcCCCEEEEEEECCCcCC
Confidence            34578999999999999876             56 45554 4567  67999999999999999999999999999999


Q ss_pred             CCCCEEEEeccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           78 EKPPSVRFHSRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        78 ~~pP~v~f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ++||+|+|.|+||||||+..+|.|| ++|+++|.|.+++.
T Consensus       106 ~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~  145 (193)
T 2f4z_A          106 YNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIR  145 (193)
T ss_dssp             TSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHH
T ss_pred             CCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHH
Confidence            9999999999999999996578887 99999999998764

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=2.9e-35  Score=203.03  Aligned_cols=97  Identities=24%  Similarity=0.334  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      .+||++|++++++++++|+ .+.+ +++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         3 ~~RL~kEl~~l~~~~~~~i-~~~~-~~~~--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   78 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGI-MAVP-VPEN--YRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI   78 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTE-EEEE-ETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHHhCCCCCE-EEEE-CCCc--ccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCC
Confidence            4799999999999998885 5443 5567  6799999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCCCCcccEEec
Q 033475           95 NHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        95 ~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      +. +|.+| ++|+++|+|.+++.
T Consensus        79 ~~-~G~iCl~iL~~~W~p~~~i~  100 (149)
T 2r0j_A           79 DK-LGRICLDILKDKWSPALQIR  100 (149)
T ss_dssp             CT-TCBBCCGGGTTTCCTTSCHH
T ss_pred             CC-CCEEechhcCCCCCCCCcHH
Confidence            96 57777 99999999998754

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.2e-35  Score=215.76  Aligned_cols=105  Identities=22%  Similarity=0.329  Sum_probs=92.1

Q ss_pred             ccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEec
Q 033475            8 SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   87 (118)
Q Consensus         8 s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   87 (118)
                      ...+..+.+||++|++++++++++|+ .+.+ .++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|
T Consensus        18 ~~~~s~a~~RL~kEl~~l~~~~~~gi-~~~p-~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T   93 (216)
T 2pwq_A           18 YFQGSKELLRLQKELKDIENENVQEI-DAHI-KDSN--FFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVT   93 (216)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHSCTTTE-EEEE-CSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCCCE-EEEE-cCCc--cceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccC
Confidence            33455678999999999999999885 5544 4567  559999999999999999999999999999999999999999


Q ss_pred             cceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           88 RINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        88 ~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      +||||||+..+|.|| ++|+++|+|.+++.
T Consensus        94 ~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~  123 (216)
T 2pwq_A           94 KIWHPNISSQTGAICLDVLKNEWSPALTIR  123 (216)
T ss_dssp             CCCBTTBCTTTCBBCCHHHHHHCCTTCCHH
T ss_pred             CCcCCCCcCCCCEEEchhhcccCCCCCcHH
Confidence            999999996678888 99999999998764

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-35  Score=208.46  Aligned_cols=105  Identities=22%  Similarity=0.249  Sum_probs=91.7

Q ss_pred             ccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEec
Q 033475            8 SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   87 (118)
Q Consensus         8 s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   87 (118)
                      .+++..+.+||++|+++|++++++|+ .+. +.++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|
T Consensus        18 ~~M~~~a~~RL~kEl~~l~~~~~~gi-~~~-p~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T   93 (169)
T 1yrv_A           18 GSMHGRAYLLLHRDFCDLKENNYKGI-TAK-PVSED--MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT   93 (169)
T ss_dssp             TGGGCHHHHHHHHHHHHHHHHCCTTE-EEE-ECSTT--SCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred             CccChHHHHHHHHHHHHHHhCCCCCE-EEE-EcCCc--cccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecC
Confidence            34556788999999999999999995 444 35667  559999999999999999999999999999999999999999


Q ss_pred             cceeccccCCCceEE-eCCC--CCCcccEEec
Q 033475           88 RINMTCVNHETGVVL-FLFD--LNSVHLVFLA  116 (118)
Q Consensus        88 ~i~HPnV~~~~g~~c-~~L~--~~w~~~~~~~  116 (118)
                      +||||||+..+|.|| ++|+  ++|+|.+++.
T Consensus        94 ~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~  125 (169)
T 1yrv_A           94 IPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLS  125 (169)
T ss_dssp             CCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHH
T ss_pred             CCccCcccCCCCeEeehhhcCCcCCCCcCCHH
Confidence            999999933678777 9999  8999998764

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=1e-34  Score=201.87  Aligned_cols=102  Identities=24%  Similarity=0.350  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccC--C-CCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDD--G-DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~--~-~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      ..+.+||++|++++++++++|+.+....+  + +|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~n--l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMD--LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEE--EEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCc--ccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            35678999999999999999975543222  1 36  7799999999999999999999999999999999999999999


Q ss_pred             ceeccccCCCceEE-eCCCC--CCcccEEec
Q 033475           89 INMTCVNHETGVVL-FLFDL--NSVHLVFLA  116 (118)
Q Consensus        89 i~HPnV~~~~g~~c-~~L~~--~w~~~~~~~  116 (118)
                      +|||||+. +|.|| ++|+.  +|+|.+++.
T Consensus        81 i~HPnv~~-~G~iCl~iL~~~~~W~p~~~i~  110 (157)
T 2gjd_A           81 FYHPNVYP-SGTICLSILNEDQDWRPAITLK  110 (157)
T ss_dssp             CCCTTBCT-TSBBCCGGGCTTTTCCTTCCHH
T ss_pred             CccCCCCC-CCcEeeecccCCCCCCCCCcHH
Confidence            99999995 67777 99988  799997753

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.3e-35  Score=215.58  Aligned_cols=100  Identities=20%  Similarity=0.374  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      +.+||++|++++++++++|+ .+.+.++++  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         3 a~~RL~kEl~~l~~~~~~gi-~~~p~~~~~--l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN   79 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHI-TLEFVSESD--IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   79 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTC-EECCCSSSS--CCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSS
T ss_pred             HHHHHHHHHHHHHhCCCCCE-EEEECCCcc--ccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCc
Confidence            57899999999999999885 555545545  569999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCCCCCcccEEec
Q 033475           94 VNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        94 V~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |+..+|.|| ++|+++|+|.+++.
T Consensus        80 I~~~~G~ICL~iL~~~WsP~~ti~  103 (215)
T 1tte_A           80 ISSVTGAICLDILRNAWSPVITLK  103 (215)
T ss_dssp             SCSSSSCCCSSTTTCCSCTTCCHH
T ss_pred             CcCCCCEEECccCCCCCCCcCcHH
Confidence            996478777 99999999998764

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.1e-34  Score=207.92  Aligned_cols=100  Identities=29%  Similarity=0.474  Sum_probs=89.4

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.+||++|+++|++++++|+ .+. ++++|  +++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi-~~~-p~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  122 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNC-SAG-PKGDN--IYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH  122 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTE-EEE-ESSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCc-eee-cccCc--cccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCcc
Confidence            4478999999999999998885 544 35677  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.|| ++|.++|.|.+++.
T Consensus       123 PNV~~-~G~ICL~iL~~~WsP~~ti~  147 (194)
T 3bzh_A          123 CNINS-QGVICLDILKDNWSPALTIS  147 (194)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             ceECC-CCceechhhhccCCCcCcHH
Confidence            99996 67777 99999999998754

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=1.3e-34  Score=208.35  Aligned_cols=101  Identities=24%  Similarity=0.320  Sum_probs=88.2

Q ss_pred             chHHHHHHHHHHHhHcCC---CCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475           12 VPRNFRLLEELERGEKGI---GDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~---~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      ..+.+||+||+++++++.   +.|+ .+.+ .++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         4 ~~a~~Rl~kEl~~l~~~~~~~~~~i-~~~~-~~~n--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   79 (201)
T 3k9o_A            4 NIAVQRIKREFKEVLKSEETSKNQI-KVDL-VDEN--FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   79 (201)
T ss_dssp             CTTHHHHHHHHHHHHTCHHHHTTSE-EEEE-CSTT--SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCE-EEEE-CCCC--ccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence            345789999999999873   5674 5443 4567  5699999999999999999999999999999999999999999


Q ss_pred             ceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           89 INMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        89 i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||||||+..+|.+| ++|+++|+|.+++.
T Consensus        80 i~HPnv~~~~G~iCl~iL~~~W~p~~~i~  108 (201)
T 3k9o_A           80 IWHPNISSVTGAICLDILKDQWAAAMTLR  108 (201)
T ss_dssp             CCBTTBCTTTCBBCCGGGTTTCCTTCCHH
T ss_pred             cccCCCcCCCCeeeCcccccCCCCCCCHH
Confidence            99999996578888 99999999998764

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=2.1e-34  Score=202.95  Aligned_cols=105  Identities=22%  Similarity=0.268  Sum_probs=87.9

Q ss_pred             ccchHHHHHHHHHHHhHc-C-C------CC-C-ceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCC
Q 033475           10 VVVPRNFRLLEELERGEK-G-I------GD-G-TVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEK   79 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~-~-~------~~-~-~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~   79 (118)
                      |+..+.+||++|++++++ + +      +. | ++.+...+++|  +++|+++|.||++|||+||.|+|+|.||++||++
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~n--l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~   80 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETD--LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMN   80 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCc--hhEEEEEEECCCCCcccCCEEEEEEECCCcCCCC
Confidence            345678999999999998 4 2      22 3 23333236778  5599999999999999999999999999999999


Q ss_pred             CCEEEEec-cceeccccCCCceEE-eCCC-CCCcccEEec
Q 033475           80 PPSVRFHS-RINMTCVNHETGVVL-FLFD-LNSVHLVFLA  116 (118)
Q Consensus        80 pP~v~f~t-~i~HPnV~~~~g~~c-~~L~-~~w~~~~~~~  116 (118)
                      ||+|+|.| +||||||+..+|.|| ++|+ ++|+|.+++.
T Consensus        81 PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~  120 (172)
T 2y9m_A           81 PPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLL  120 (172)
T ss_dssp             CCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHH
T ss_pred             CCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHH
Confidence            99999999 999999975688888 9998 9999998764

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2.5e-34  Score=213.10  Aligned_cols=105  Identities=23%  Similarity=0.309  Sum_probs=91.3

Q ss_pred             ccccchHHHHHHHHHHHhHcC---CCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEE
Q 033475            8 SSVVVPRNFRLLEELERGEKG---IGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVR   84 (118)
Q Consensus         8 s~~~~~~~kRl~kEl~~l~~~---~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   84 (118)
                      ..++..+.+||++|+++|+++   ++.|+ .+.+ .++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+
T Consensus        52 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi-~v~p-~~dn--l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~  127 (253)
T 3e46_A           52 FDMANIAVQRIKREFKEVLKSEETSKNQI-KVDL-VDEN--FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR  127 (253)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCHHHHTTSE-EEEE-CSTT--SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             ccccHHHHHHHHHHHHHHHhCCCCCCCCE-EEEE-CCCc--ccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeee
Confidence            345667899999999999987   35674 4443 4567  569999999999999999999999999999999999999


Q ss_pred             EeccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           85 FHSRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        85 f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |.|+||||||+..+|.|| ++|.++|.|.+++.
T Consensus       128 F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~  160 (253)
T 3e46_A          128 FITKIWHPNISSVTGAICLDILKDQWAAAMTLR  160 (253)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHH
T ss_pred             ecCCCccCCccCCCCeeecccccCCCCCCCCHH
Confidence            999999999996578887 99999999998764

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=1.7e-34  Score=200.33  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.+||++|++++++++++|+ .+..++++|  +++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i-~~~~~~~~~--l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYL-RNLSSDDAN--VLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHP   79 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTE-EEEEECSSC--TTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHHhCCCCCE-EEEecCCCc--hheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccC
Confidence            457899999999999999885 443456778  559999999 9999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCC-CCCCcccEEec
Q 033475           93 CVNHETGVVL-FLF-DLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L-~~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++| .++|+|.+++.
T Consensus        80 nV~~-~G~iCl~iL~~~~W~p~~~i~  104 (155)
T 1wzv_A           80 NVDE-NGQICLPIISSENWKPCTKTC  104 (155)
T ss_dssp             TBCT-TCBCCCGGGCTTTCCTTCCHH
T ss_pred             cCCC-CCeEeecCCCccCCCCCCcHH
Confidence            9996 77777 999 89999998754

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.5e-34  Score=199.23  Aligned_cols=98  Identities=13%  Similarity=0.287  Sum_probs=86.1

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.+||++|++++  ++++| +.+..++++|  +++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~-~~~~~~~~~~--l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKT-CDISFSDPDD--LLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   78 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTT-EEEECSSTTC--TTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHhc--CCCCC-eEEEeccCCc--cceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCcc
Confidence            45789999999999  45667 4655567788  55999988 9999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.+| ++|+++|+|.+++.
T Consensus        79 Pnv~~-~G~iCl~iL~~~W~p~~~i~  103 (160)
T 1y8x_A           79 PNIDL-EGNVCLNILREDWKPVLTIN  103 (160)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             CcCCC-CCeEEcccchhhccCCCCHH
Confidence            99996 67777 99999999998764

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.1e-34  Score=202.31  Aligned_cols=101  Identities=13%  Similarity=0.274  Sum_probs=88.2

Q ss_pred             cccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475            9 SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus         9 ~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      +.+..+.+||++|++++  ++++| +.+.+++++|  ++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        22 ~~~~~~~~RL~kEl~~l--~~~~~-i~~~~p~~~n--l~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~   95 (180)
T 2nvu_C           22 KKASAAQLRIQKDINEL--NLPKT-CDISFSDPDD--LLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM   95 (180)
T ss_dssp             CSCCHHHHHHHHHHHTC--CCCTT-EEEECSSTTC--TTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             CCccHHHHHHHHHHHhc--CCCCC-eEEEeccccc--ccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence            34566889999999999  45667 5666567788  55999998 9999999999999999999999999999999999


Q ss_pred             ceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           89 INMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        89 i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      +|||||+. +|.+| ++|+++|.|.+++.
T Consensus        96 i~HPNV~~-~G~iCl~iL~~~W~p~~~i~  123 (180)
T 2nvu_C           96 VYHPNIDL-EGNVALNILREDWKPVLTIN  123 (180)
T ss_dssp             CCBTTBCT-TSBBCCGGGTTSCCTTCCHH
T ss_pred             CccCCCCC-CCcEEcccccccCCCCCCHH
Confidence            99999996 67777 99999999998754

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=6.5e-34  Score=197.15  Aligned_cols=98  Identities=22%  Similarity=0.336  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      +.+||++|++++++++++|+.. ..++++|  ++.|+++|. |++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~-~~~~~~~--l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRN-IQVDEAN--LLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN   78 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEE-ECSSCSS--SSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEE-eeCCCCc--hheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence            4579999999999999999643 3456778  559999998 99999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCC-CCCcccEEec
Q 033475           94 VNHETGVVL-FLFD-LNSVHLVFLA  116 (118)
Q Consensus        94 V~~~~g~~c-~~L~-~~w~~~~~~~  116 (118)
                      |+. +|.+| ++|. ++|+|.+++.
T Consensus        79 v~~-~G~iCl~iL~~~~W~p~~~i~  102 (154)
T 1c4z_D           79 IDE-KGQVCLPVISAENWKPATKTD  102 (154)
T ss_dssp             BCT-TCBBCCTTTSSSSCCTTCCHH
T ss_pred             CCC-CCEEECCCCCCCCCCCCCcHH
Confidence            996 67777 9996 8999998753

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=4.3e-34  Score=201.24  Aligned_cols=97  Identities=23%  Similarity=0.234  Sum_probs=84.8

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      +.+.+||++|++++++++. ++   .  .++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        11 ~~~~~RL~~El~~l~~~~~-~v---~--~~~~--l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~H   82 (171)
T 1yf9_A           11 LRSNRRREMDYMRLCNSTR-KV---Y--PSDT--VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILH   82 (171)
T ss_dssp             --CCHHHHHHHHHHHSSSS-CE---E--ECSS--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             ccHHHHHHHHHHHHHhCCC-CC---C--CCCC--ceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCccc
Confidence            3567999999999999873 32   2  3567  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+..+|.+| ++|+++|+|.+++.
T Consensus        83 PNi~~~~G~iCl~iL~~~W~p~~~i~  108 (171)
T 1yf9_A           83 PNVDERSGSVCLDVINQTWTPMYQLE  108 (171)
T ss_dssp             TTBCTTTCBBCHHHHHHHCCTTCCTH
T ss_pred             ccCcccCCeEeccccccCCCCCCcHH
Confidence            99996578888 99999999988753

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=2.9e-34  Score=201.34  Aligned_cols=100  Identities=22%  Similarity=0.354  Sum_probs=87.3

Q ss_pred             cchHHHHHHHHHHHhHcCC------------CCCceEEeccCCCCcceeEEEEEEECCCCCCCC--CcEEEEEEEccCCC
Q 033475           11 VVPRNFRLLEELERGEKGI------------GDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE--GRIYQLKLFCDKDY   76 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~------------~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~Y   76 (118)
                      +..+.|||++|++++++++            ..++ .+. ++++|  +++|+++|.||++|||+  ||.|+++|.||++|
T Consensus         6 s~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i-~~~-~~~~n--l~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~Y   81 (167)
T 4ds2_A            6 KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTA-IFS-VDTDT--IYNWILKVKAPADSVYGGAGNTYQLSVLFSDDY   81 (167)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCE-EEE-EEESS--TTEEEEEEECCTTSGGGTTCCEEEEEEECCTTT
T ss_pred             cHHHHHHHHHHHHHHHhCcccccccccccCCCCcE-EEE-eCCCc--ccEEEEEEECCCCCCccCCCCEEEEEEECCCCC
Confidence            3456789999999999976            5564 333 46678  55999999999999999  99999999999999


Q ss_pred             CCCCCEEEEeccceeccccCCCceEE-eCCCCCCcccEEe
Q 033475           77 PEKPPSVRFHSRINMTCVNHETGVVL-FLFDLNSVHLVFL  115 (118)
Q Consensus        77 P~~pP~v~f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~  115 (118)
                      |++||+|+|.|++|||||+ .+|.+| ++|+++|+|.+++
T Consensus        82 P~~pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i  120 (167)
T 4ds2_A           82 PHEPPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHA  120 (167)
T ss_dssp             TTSCCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCH
T ss_pred             CCCCCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCCh
Confidence            9999999999999999999 578777 9999999999874

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=99.98  E-value=6.7e-34  Score=196.89  Aligned_cols=95  Identities=20%  Similarity=0.304  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      .|||+||+++++++   |+ .+.+ .++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         4 ~~Rl~kEl~~l~~~---~~-~v~~-~~~~--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni   76 (152)
T 2onu_A            4 LTRKQCDFTKLIMA---GY-DLEL-NNGS--TQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNV   76 (152)
T ss_dssp             CCHHHHTHHHHHHH---TC-CEEE-ETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             HHHHHHHHHhcCcC---CC-EEEE-ccCc--cceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcC
Confidence            46999999999885   43 3333 4567  6799999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCCCCcccEEec
Q 033475           95 NHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        95 ~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      +..+|.+| ++|+++|+|.+++.
T Consensus        77 ~~~~G~iCl~il~~~W~p~~~i~   99 (152)
T 2onu_A           77 DEASGSVCLDVINQTWTPLYSLV   99 (152)
T ss_dssp             CTTTCBBCHHHHHHHCCTTCCHH
T ss_pred             cCcCCeEecccccccCCCCCCHH
Confidence            96578888 99999999987653

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.98  E-value=1.4e-32  Score=196.01  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             CCCCCCCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCC
Q 033475            1 MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKP   80 (118)
Q Consensus         1 ~~~~~~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~p   80 (118)
                      |++ ++.++++..+.+||++|+++|++++++|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++|
T Consensus         3 mss-~~~~~~~~~a~~RL~kEl~~l~~~~~~~i-~~~-p~~~n--l~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~P   77 (187)
T 2f4w_A            3 MSS-TSSKRAPTTATQRLKQDYLRIKKDPVPYI-CAE-PLPSN--ILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP   77 (187)
T ss_dssp             ------------CHHHHHHHHHHHHHHSCCTTE-EEE-EETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSC
T ss_pred             CCc-cCCCCCccHHHHHHHHHHHHHHhCCCCCE-EEE-EcCCc--cceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCC
Confidence            443 33346667799999999999999999885 444 45667  67999999999999999999999999999999999


Q ss_pred             CEEEEeccceeccccCCCceEE-eCC---CCCCcccEEec
Q 033475           81 PSVRFHSRINMTCVNHETGVVL-FLF---DLNSVHLVFLA  116 (118)
Q Consensus        81 P~v~f~t~i~HPnV~~~~g~~c-~~L---~~~w~~~~~~~  116 (118)
                      |+|+|.|+  ||||++ +|.|| ++|   .++|.|.+++.
T Consensus        78 P~v~f~T~--~~~~~~-~G~ICL~iL~~~~~~W~P~~ti~  114 (187)
T 2f4w_A           78 PSIYMITP--NGRFKC-NTRLCLSITDFHPDTWNPAWSVS  114 (187)
T ss_dssp             CEEEECSC--CSSBCT-TSCBC----------CCTTCCHH
T ss_pred             CcccccCC--Cceecc-CCeEeeeccccCccCCCCcCcHH
Confidence            99999999  999996 56666 999   68999998764

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.97  E-value=2.4e-32  Score=195.14  Aligned_cols=101  Identities=17%  Similarity=0.194  Sum_probs=87.4

Q ss_pred             cccchHHHHHHHHHHHhHcCCCCCceEEec---cCCCCccee---EEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCE
Q 033475            9 SVVVPRNFRLLEELERGEKGIGDGTVSYGM---DDGDDIYMR---SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPS   82 (118)
Q Consensus         9 ~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~---~~~~n~~l~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~   82 (118)
                      .....+.+||++||++++  .+++ +.+..   ++++|  ++   .|+++|. |++|||+||.|+++|.||++||++||+
T Consensus        25 ~~~s~a~~RL~kEl~~l~--~~~~-i~~~~~~~p~~~n--l~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~   98 (190)
T 3o2u_A           25 PNLSAARIRLKRDLDSLD--LPPT-VTLNVITSPDSAD--RSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPK   98 (190)
T ss_dssp             CCCCHHHHHHHHHHHTCC--CCTT-EEEEEEECTTCCC--TTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCE
T ss_pred             CCccHHHHHHHHHHHhcc--CCCC-EEEEecCCCCCcc--CCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCce
Confidence            344567899999999999  5566 45542   67778  66   9999997 788999999999999999999999999


Q ss_pred             EEEeccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           83 VRFHSRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        83 v~f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |+|.|++|||||+. +|.+| ++|+++|.|.+++.
T Consensus        99 v~f~t~i~HPnV~~-~G~iCl~iL~~~W~p~~~i~  132 (190)
T 3o2u_A           99 VVCLKKIFHPNIDL-KGNVCLNILREDWSPALDLQ  132 (190)
T ss_dssp             EEECSCCCCTTBCT-TSBBCCGGGTTTCCTTCCHH
T ss_pred             eEEecCcccCCCCC-CCeEechhccCCCCCCCCHH
Confidence            99999999999995 77777 99999999988764

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=99.97  E-value=7e-33  Score=196.26  Aligned_cols=96  Identities=19%  Similarity=0.303  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.|||+||+++++++   |+ .+.+.  +|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        25 ~a~~RL~kEl~~l~~~---g~-~v~~~--dd--l~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HP   96 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIES---KH-EVTIL--GG--LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHP   96 (179)
T ss_dssp             HHHHHHHHHHHHHHHS---SS-CEEEE--EE--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHhcCcC---CC-EEEEC--CC--CceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccC
Confidence            4789999999999863   43 33433  45  45999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+..+|.+| ++|+++|+|.+++.
T Consensus        97 NV~~~~G~ICL~iL~~~WsP~~ti~  121 (179)
T 2z5d_A           97 NIDEASGTVCLDVINQTWTALYDLT  121 (179)
T ss_dssp             TBCTTTCBBCHHHHHHHCCTTCCTT
T ss_pred             cCCCCCCeEeccccccCCCCCCCHH
Confidence            9996478887 99999999998754

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.97  E-value=6.4e-32  Score=211.11  Aligned_cols=99  Identities=28%  Similarity=0.453  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.|||+||++++++++++|+ .+. +.++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         3 ~a~~RL~kEl~~l~~~~~~~~-~~~-p~~~n--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   78 (399)
T 4ddg_A            3 MALKRIHKELNDLARDPPAQC-SAG-PVGDD--MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   78 (399)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSE-EEE-EETTE--EEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCE-EEE-EcCCc--ceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccc
Confidence            468999999999999999995 444 35667  67999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++|+++|+|.+++.
T Consensus        79 nv~~-~G~iCl~il~~~W~p~~~i~  102 (399)
T 4ddg_A           79 NINS-NGSISLDILRSQWSPALTIS  102 (399)
T ss_dssp             TBCT-TCBBCCGGGTTSCCTTCCHH
T ss_pred             ccCC-CCeEeCcccccCCCccccHH
Confidence            9996 77777 99999999998764

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=6.8e-32  Score=192.25  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=88.4

Q ss_pred             cccchHHHHHHHHHHHhHcCC---CCCceEEeccCCCCcceeEEEEEEECC-CCCCCCC-----------cEEEEEEEcc
Q 033475            9 SVVVPRNFRLLEELERGEKGI---GDGTVSYGMDDGDDIYMRSWTGTIIGP-HNTVHEG-----------RIYQLKLFCD   73 (118)
Q Consensus         9 ~~~~~~~kRl~kEl~~l~~~~---~~~~~~~~~~~~~n~~l~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp   73 (118)
                      .++..+.+||++||++|++++   +.+ +.+.+ .++|  ++.|+++|.|| ++|||+|           |.|+|+|.||
T Consensus        23 ~~s~~a~~RL~kEl~~l~~~~~~~~~~-~~~~p-~~dn--l~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp   98 (186)
T 1zuo_A           23 SGSVQASDRLMKELRDIYRSQSYKTGI-YSVEL-INDS--LYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK   98 (186)
T ss_dssp             -CCHHHHHHHHHHHHHHHTSHHHHTTS-EEEEE-ETTE--EEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCCCc-EEEEE-cCCc--cceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence            345668899999999999987   455 55554 4567  67999999998 9999998           8999999999


Q ss_pred             CCCCCCCCEEEEeccceec-cccCCCceEE-eCCC-CCCcccEEec
Q 033475           74 KDYPEKPPSVRFHSRINMT-CVNHETGVVL-FLFD-LNSVHLVFLA  116 (118)
Q Consensus        74 ~~YP~~pP~v~f~t~i~HP-nV~~~~g~~c-~~L~-~~w~~~~~~~  116 (118)
                      ++||++||+|+|.|++||| ||+. +|.|| ++|. ++|+|.+++.
T Consensus        99 ~~YP~~PP~V~f~tpi~hPnnV~~-~G~ICL~iL~~~~WsP~~ti~  143 (186)
T 1zuo_A           99 DNFPFDPPFVRVVLPVLSGGYVLG-GGALCMELLTKQGWSSAYSIE  143 (186)
T ss_dssp             TTTTSSCCEEEEEESCEESTTBCG-GGBBCCGGGSTTTCCTTSCHH
T ss_pred             CCCCCCCCeEEEeCCccCCCccCC-CCcEEeccCCCCCCCCcCcHH
Confidence            9999999999999999999 6994 78777 9997 7899998764

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.97  E-value=3e-31  Score=201.92  Aligned_cols=104  Identities=17%  Similarity=0.223  Sum_probs=89.0

Q ss_pred             cccchHHHHHHHHHHHhHcCCCCCceE--EeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEe
Q 033475            9 SVVVPRNFRLLEELERGEKGIGDGTVS--YGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFH   86 (118)
Q Consensus         9 ~~~~~~~kRl~kEl~~l~~~~~~~~~~--~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   86 (118)
                      .++..+.+||++|+++|++++++++.+  ...++++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.
T Consensus        72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~edn--l~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEER--LDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSC--TTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCC--ccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            355678999999999999988776321  12246678  55999999999999999999999999999999999999999


Q ss_pred             cc-----ceeccccCCCceEE-eCCC-------CCCcccE-Ee
Q 033475           87 SR-----INMTCVNHETGVVL-FLFD-------LNSVHLV-FL  115 (118)
Q Consensus        87 t~-----i~HPnV~~~~g~~c-~~L~-------~~w~~~~-~~  115 (118)
                      |+     +||||||. +|.|| ++|+       ++|+|.+ ++
T Consensus       150 T~~g~~~ifHPNV~~-~G~ICLsiL~~~~g~~~e~WsPa~stI  191 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYN-DGKVCLSILNTWHGRPEEKWNPQTSSF  191 (323)
T ss_dssp             CSTTTTCCCBTTBCT-TCBBCCGGGTSSCCCGGGSCCTTTCCH
T ss_pred             ccCCCcccccCCCCc-CCeEechhhccccCCCcCCCCcCcCCH
Confidence            99     99999995 67777 9998       6999987 44

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.91  E-value=1.1e-26  Score=161.51  Aligned_cols=92  Identities=15%  Similarity=0.101  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCc----------EEEEEEEccCCCCCCCCEE
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSV   83 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v   83 (118)
                      -.+||++|++.|++.        ..++.+|  ++.|.+++.||++|+|+||          .|+++++||++||++||+|
T Consensus        33 w~~RL~eE~k~L~k~--------v~p~k~n--~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV  102 (172)
T 2z6o_A           33 WVQRLKEEYQSLIRY--------VENNKNA--DNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEI  102 (172)
T ss_dssp             HHHHHHHHHHHHHHH--------HHHHHHT--TCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             HHHHHHHHHHHHHHH--------hccCccc--cceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCee
Confidence            378999999999982        1234456  5599999999999999999          9999999999999999999


Q ss_pred             EEecc-ceeccccCCCceEE-eCC-CC---CCcccEEec
Q 033475           84 RFHSR-INMTCVNHETGVVL-FLF-DL---NSVHLVFLA  116 (118)
Q Consensus        84 ~f~t~-i~HPnV~~~~g~~c-~~L-~~---~w~~~~~~~  116 (118)
                      +|.++ +||||||. +|.|| ++| +.   +|+|.+.++
T Consensus       103 ~F~~~~~~hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~Ia  140 (172)
T 2z6o_A          103 AVPELDGKTAKMYR-GGKICLTDHFKPLWARNVPKFGLA  140 (172)
T ss_dssp             BCGGGTTTCSSBCT-TSBBCCCTTHHHHHHHHTTSCCHH
T ss_pred             eeCCCCCCCCCCCC-CCcEechhhccccccccCCccCHH
Confidence            99998 99999995 78777 999 43   444776553

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.73  E-value=2.9e-19  Score=122.09  Aligned_cols=88  Identities=18%  Similarity=0.184  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCc----------EEEEEEEccCCCCCCCCEE
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSV   83 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v   83 (118)
                      =..||+.|++.|-+-     +... ...||    .|...+.||+||+|.|+          .|+++++||.+||..||+|
T Consensus        35 w~~RlkeEy~alI~y-----v~~n-K~~d~----dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI  104 (168)
T 3kpa_A           35 WTARLKEEYASLITY-----VEHN-KASDS----HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEI  104 (168)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHH-HHTTC----CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             HHHHHHHHHHHHHHH-----HHhc-ccccC----CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEe
Confidence            468999999988752     1211 23344    89999999999999999          9999999999999999999


Q ss_pred             EEecc-ceeccccCCCceEE-eCCCCCCcccEEe
Q 033475           84 RFHSR-INMTCVNHETGVVL-FLFDLNSVHLVFL  115 (118)
Q Consensus        84 ~f~t~-i~HPnV~~~~g~~c-~~L~~~w~~~~~~  115 (118)
                      +|.+. .+|||+| ++|.|| +++   |.|.+.-
T Consensus       105 ~Fp~ldgkt~kmY-r~GkICLdIh---wkPlW~~  134 (168)
T 3kpa_A          105 ALPELEGKTVKMY-RGGKICMTTH---FFPLWAR  134 (168)
T ss_dssp             BCGGGTTTCSSEE-TTTEECCCTT---HHHHHHH
T ss_pred             ecccccCcCcccc-CCCcEEeccc---cchhhHh
Confidence            99995 8999999 588888 875   8887643

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.49  E-value=2.4e-14  Score=99.61  Aligned_cols=91  Identities=14%  Similarity=0.171  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhHcCCC---CCceEEeccCCCCcceeEEEEEEECCCCCCCCCcE---EEEEEEccCCCCCCCCEEEEec--
Q 033475           16 FRLLEELERGEKGIG---DGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI---YQLKLFCDKDYPEKPPSVRFHS--   87 (118)
Q Consensus        16 kRl~kEl~~l~~~~~---~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t--   87 (118)
                      +|..+|+..+-+.-+   +..-.+...|+.    .++-+.+.|.-..+|+|+.   |.+.|.||++||++||.|.|.+  
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~----~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t  106 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGT----PQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN  106 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSC----EEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGG
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCC----hheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCC
Confidence            566677776655322   111112333332    2455555555558999999   8899999999999999997755  


Q ss_pred             -----c---ce-eccccCCCceEE-eCCCCCCccc
Q 033475           88 -----R---IN-MTCVNHETGVVL-FLFDLNSVHL  112 (118)
Q Consensus        88 -----~---i~-HPnV~~~~g~~c-~~L~~~w~~~  112 (118)
                           +   |+ |||||. +|.|| ++|+ +|++.
T Consensus       107 ~~m~~~~~~I~~hpnVD~-~G~I~lpyL~-~W~p~  139 (162)
T 3r3q_A          107 FDMNTISSSLPIQEYIDS-NGWIALPILH-AWDPA  139 (162)
T ss_dssp             CCTTTSCTTSTHHHHBCT-TSBBCCGGGG-SCCGG
T ss_pred             ccccccccccCCCCCCCC-CCcEeCcccc-cCCCC
Confidence                 1   77 999995 77777 9995 69984

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.25  E-value=1.8e-11  Score=83.79  Aligned_cols=59  Identities=25%  Similarity=0.357  Sum_probs=51.3

Q ss_pred             eeEEEEEEECCCCCCCCCcEEEE--EEEccCCCCCCCCEEEEecc------ceeccccCCCceEE-eCCCCCCcc
Q 033475           46 MRSWTGTIIGPHNTVHEGRIYQL--KLFCDKDYPEKPPSVRFHSR------INMTCVNHETGVVL-FLFDLNSVH  111 (118)
Q Consensus        46 l~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~HPnV~~~~g~~c-~~L~~~w~~  111 (118)
                      |..|.++|.    .+|+|+.|.+  .|-||++||++||.| |.++      .+|||||. +|.|| +.|++ |.+
T Consensus        53 LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~~-W~~  120 (146)
T 3obq_A           53 LMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLHE-WKH  120 (146)
T ss_dssp             EEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHHT-CCT
T ss_pred             EEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEecccccc-cCC
Confidence            789999998    5899999995  888999999999999 7766      58999995 77777 99965 987

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.12  E-value=0.004  Score=40.51  Aligned_cols=70  Identities=21%  Similarity=0.162  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEec
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   87 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   87 (118)
                      +....+...|+.-|+.--++.+ ..  .+.+.   ..+.+.|..-.+..-+.-.+.+.+.+|++||..||.+...+
T Consensus         9 ~~~~e~q~~EleaL~sIy~d~~-~~--~~~~~---~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A            9 TDYGEEQRNELEALESIYPDSF-TV--LSENP---PSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSSE-EE--CCSSS---CEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHccCce-EE--ccCCC---CEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            3446678899999987444442 32  12211   25566555222212223478899999999999999998765

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=96.57  E-value=0.021  Score=36.99  Aligned_cols=71  Identities=17%  Similarity=0.131  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCC-CCcceeEEEEEEECCCCCCC--CCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDG-DDIYMRSWTGTIIGPHNTVH--EGRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~-~n~~l~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      ..++..|+.-|+.--++.+ ....... ..  -..+.+.+..+.+..-  ..-.+.|.+.+|++||..+|.+...+.
T Consensus        10 ~e~~~~EleaL~SIY~de~-~~~~~~~~~~--~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           10 DWVLPSEVEVLESIYLDEL-QVIKGNGRTS--PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             CCHHHHHHHHHHHHSTTTE-EEECCTTSSC--CEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCce-EEecCCCCCC--CeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            3478899999987444443 3221111 12  2245555543222111  124788999999999999999987763

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.079  Score=34.67  Aligned_cols=68  Identities=15%  Similarity=0.019  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCC-------CCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEe
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDG-------DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFH   86 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~-------~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   86 (118)
                      ...+...|+.-|+.--++.+ ..  .+.       +.  -..+.+.|....+ .-..-.+.+.+.+|++||..||.|...
T Consensus        11 ~~e~q~~EleaL~SIY~d~~-~~--~~~~~~~~~~~~--~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~   84 (138)
T 2yz0_A           11 YYEIQCNELEAIRSIYMDDF-TD--LTKRKSSWDKQP--QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFK   84 (138)
T ss_dssp             HHHHHHHHHHHHHTTSSSSE-EC--CSTTSSSSCSSC--CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEE
T ss_pred             hHHHHHHHHHHHHHHChhhh-ee--cccccccccCCC--CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEe
Confidence            34567788888886433332 22  121       11  1266777763222 111347889999999999999999876


Q ss_pred             c
Q 033475           87 S   87 (118)
Q Consensus        87 t   87 (118)
                      .
T Consensus        85 ~   85 (138)
T 2yz0_A           85 N   85 (138)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=96.11  E-value=0.051  Score=35.47  Aligned_cols=78  Identities=21%  Similarity=0.195  Sum_probs=45.7

Q ss_pred             CCCccccchHHHHHHHHHHHhHcCCCCCceEEeccCCCC---c-ceeEEEEEEECCCC-C-CCCCcEEEEEEEccCCCCC
Q 033475            5 SGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDD---I-YMRSWTGTIIGPHN-T-VHEGRIYQLKLFCDKDYPE   78 (118)
Q Consensus         5 ~~~s~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n---~-~l~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~   78 (118)
                      ++|+........+...|+.-|+.--++.+ ...  +.+.   . .-..+.+.+. +.+ . .-..-.+.|.+.||++||.
T Consensus         2 ~~~~~~~~~~~e~q~~EleaL~SIY~d~~-~~~--~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~   77 (137)
T 1ukx_A            2 SSGSSGMESYSQRQDHELQALEAIYGSDF-QDL--RPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPD   77 (137)
T ss_dssp             CCCSCCCCCHHHHHHHHHHHHHHHTSSSE-EEC--CCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTS
T ss_pred             CCCCCCCcchHHHHHHHHHHHHHHCcccc-eec--cCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCC
Confidence            44555555667788899998886433332 221  1110   0 0114555555 221 1 0012468899999999999


Q ss_pred             CCCEEEEe
Q 033475           79 KPPSVRFH   86 (118)
Q Consensus        79 ~pP~v~f~   86 (118)
                      .+|.|...
T Consensus        78 ~~P~i~l~   85 (137)
T 1ukx_A           78 VVPEIDLK   85 (137)
T ss_dssp             SCCCCEEE
T ss_pred             CCCcEEEe
Confidence            99999874

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.77  E-value=0.073  Score=34.44  Aligned_cols=67  Identities=13%  Similarity=0.045  Sum_probs=39.2

Q ss_pred             HHHHHHHHhHcCCCC--CceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEec
Q 033475           17 RLLEELERGEKGIGD--GTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   87 (118)
Q Consensus        17 Rl~kEl~~l~~~~~~--~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   87 (118)
                      +...|+.-|+.--+.  .+ ........+  ...+.+.+.. .+..=..-.+.+.+.+|.+||..+|.+...+
T Consensus        11 ~q~~EleaL~SIy~d~~e~-~~~~~~~~~--~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEW-EVLSRSETD--GTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTC-CCSEECSSS--CEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCce-EEecCCCCC--CCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            577888888763221  22 111001112  2367777763 2210012478999999999999999987654

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=92.10  E-value=0.16  Score=34.06  Aligned_cols=25  Identities=16%  Similarity=0.075  Sum_probs=22.0

Q ss_pred             cEEEEEEEccCCCCCCCCEEEEecc
Q 033475           64 RIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        64 g~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      ..+.+.|.+|.+||..+|.+...+.
T Consensus        75 ~~i~L~v~lP~~YP~~~P~i~l~~~   99 (154)
T 2daw_A           75 VKIDLQVTMPHSYPYLALQLFGRSS   99 (154)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEECS
T ss_pred             ceEEEEEEcCCCCCCCCCcEEEEeC
Confidence            3799999999999999999987664

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=91.89  E-value=0.11  Score=34.63  Aligned_cols=25  Identities=20%  Similarity=0.378  Sum_probs=21.5

Q ss_pred             cEEEEEEEccCCCCCCCCEEEEecc
Q 033475           64 RIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        64 g~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      -.+.+.+.+|.+||..||.+.....
T Consensus        73 ~~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           73 AMFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             ceEEEEEECCCCCCCCCCeEEEEcc
Confidence            3688999999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-36
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	4e-35
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	5e-15
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	7e-14
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-12
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	3e-12
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	3e-11
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	3e-11
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	4e-11
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-10
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-10
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-10
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	3e-10
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	4e-10
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	7e-10
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-09
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-09
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-09
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	5e-09
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	8e-09
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	1e-08
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	2e-08
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	4e-08
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	7e-08
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	1e-07
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-07
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	1e-04
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	3e-04

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  119 bits (299), Expect = 1e-36
 Identities = 56/92 (60%), Positives = 69/92 (75%)

Query: 10  VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 69
           V VPRNFRLLEELE G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY LK
Sbjct: 2   VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 61

Query: 70  LFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           + C   YPE PP VRF ++INM  VN   GVV
Sbjct: 62  IECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 93

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score =  115 bits (289), Expect = 4e-35
 Identities = 53/90 (58%), Positives = 64/90 (71%)

Query: 12  VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
           VPRNFRLLEELE+GEKG G  + SYG+ D DDI M  W GTI+GP ++ HE RIY L + 
Sbjct: 3   VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSID 62

Query: 72  CDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
           C  +YP+ PP V F S+IN+ CVN  TG V
Sbjct: 63  CGPNYPDSPPKVTFISKINLPCVNPTTGEV 92

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 64.8 bits (157), Expect = 5e-15
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 15  NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDK 74
           +  L ++L    +   DG  S G+ D +DIY   W   +IGP +T++EG  ++  L   +
Sbjct: 2   SLLLKKQLADMRRVPVDG-FSAGLVDDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPR 58

Query: 75  DYPEKPPSVRFHSRINMTCVNHETGVVLFLF 105
           DYP+KPP ++F S I    ++ E  V + + 
Sbjct: 59  DYPQKPPKMKFISEIWHPNIDKEGNVCISIL 89

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 7e-14
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 15  NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDK 74
           +  L  +L    K   +G  S G+ D +D+Y   W   IIGP +T++EG +++  L   K
Sbjct: 1   SLLLRRQLAELNKNPVEG-FSAGLIDDNDLYR--WEVLIIGPPDTLYEGGVFKAHLTFPK 57

Query: 75  DYPEKPPSVRFHSRINMTCVNHETGVVL 102
           DYP +PP ++F + I    V+    V +
Sbjct: 58  DYPLRPPKMKFITEIWHPNVDKNGDVCI 85

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 57.1 bits (137), Expect = 3e-12
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCD 73
          R  R+++E++  +       ++       DI+     GT +GP  T +EG  + + +   
Sbjct: 2  RAKRIMKEIQAVKDDPAAH-ITLEFVSESDIHH--LKGTFLGPPGTPYEGGKFVVDIEVP 58

Query: 74 KDYPEKPPSVRFHSRINMTCVNHET 98
           +YP KPP ++F +++    ++  T
Sbjct: 59 MEYPFKPPKMQFDTKVYHPNISSVT 83

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 57.1 bits (137), Expect = 3e-12
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           R+ +EL+   +       S G    D   +  W  TI+GP  + ++G ++ L +    DY
Sbjct: 5   RIQKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60

Query: 77  PEKPPSVRFHSRINMTCVNHETGVVLFLFD 106
           P KPP V F +RI    +N    + L +  
Sbjct: 61  PFKPPKVAFTTRIYHPNINSNGSICLDILR 90

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 53.9 bits (129), Expect = 3e-11
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 16  FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKD 75
           +R+ +EL            +  +   +   +R W    +G  NT++   +Y+LK+    D
Sbjct: 1   YRIQKELHNFLNNPPIN-CTLDVHPNN---IRIWIVKYVGLENTIYANEVYKLKIIFPDD 56

Query: 76  YPEKPPSVRFHSRINMTCVNHETGVV 101
           YP KPP V F  +       +  G +
Sbjct: 57  YPLKPPIVYFLQKPPKHTHVYSNGDI 82

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 55.2 bits (132), Expect = 3e-11
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 14  RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCD 73
           +  R  +           G VS  +  GD   +  W G I GP  T +EG  + L +   
Sbjct: 15  QLQRAHDSEPAATHSTSHG-VSAQIVGGD---IHRWRGFIAGPLGTPYEGGHFTLDIVIP 70

Query: 74  KDYPEKPPSVRFHSRINMTCVNHETGVV 101
            DYP  PP ++F ++I    ++ +TG +
Sbjct: 71  PDYPYNPPKMKFVTKIWHPNISSQTGAI 98

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 4e-11
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGD-DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKD 75
           RL +E +   K    G V+    + D  + + +W   I G   T  EG +++L++    D
Sbjct: 6   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 65

Query: 76  YPEKPPSVRFHSRINMTCVNHETGVVLFLF 105
           YP  PP  +F   +    V     V L + 
Sbjct: 66  YPSSPPKCKFEPPLFHPNVYPSGTVSLSIL 95

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 2e-10
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           RL +EL   +     G         + I    W   + G   T++EG  +QL       Y
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQ--WIVDMEGAPGTLYEGEKFQLLFKFSSRY 64

Query: 77  PEKPPSVRFHSRINMTCVN-HETGVV 101
           P   P V F         + +  G +
Sbjct: 65  PFDSPQVMFTGENIPVHPHVYSNGHI 90

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 52.0 bits (124), Expect = 3e-10
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL+ + +R ++    G VS      +   +  W   IIGP +T +E   ++L L  D++Y
Sbjct: 7  RLMRDFKRMKEDAPPG-VSASPLPDN---VMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 77 PEKPPSVRFHSRINMTCVN 95
          P KPP V+F S +    V 
Sbjct: 63 PNKPPHVKFLSEMFHPNVY 81

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 52.1 bits (124), Expect = 3e-10
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 6/94 (6%)

Query: 12  VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
           +P+  R+++E E+       G ++    D +   +R +  TI GP  + +E  I++L+L+
Sbjct: 4   LPK--RIIKETEKLVSDPVPG-ITAEPHDDN---LRYFQVTIEGPEQSPYEDGIFELELY 57

Query: 72  CDKDYPEKPPSVRFHSRINMTCVNHETGVVLFLF 105
              DYP + P VRF ++I    ++    + L + 
Sbjct: 58  LPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL 91

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-10
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           R+ +EL            S G    +   +  W  TI+GP  +V+EG ++ L +    DY
Sbjct: 6   RIQKELAEITLDPPPN-CSAGPKGDN---IYEWRSTILGPPGSVYEGGVFFLDITFSPDY 61

Query: 77  PEKPPSVRFHSRINMTCVNHETGVVLFLF 105
           P KPP V F +RI    +N +  + L + 
Sbjct: 62  PFKPPKVTFRTRIYHCNINSQGVICLDIL 90

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (123), Expect = 4e-10
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 8  SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 67
          +++ V R  R  +E+ + E+      +   + D +        G I GP +T +EG  YQ
Sbjct: 2  ANIAVQRIKREFKEVLKSEE-TSKNQIKVDLVDEN---FTELRGEIAGPPDTPYEGGRYQ 57

Query: 68 LKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 99
          L++   + YP  PP VRF ++I    ++  TG
Sbjct: 58 LEIKIPETYPFNPPKVRFITKIWHPNISSVTG 89

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 51.3 bits (122), Expect = 7e-10
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RL +EL         G ++   D  +   +  W  T+ GP +TV+E   Y+L L    DY
Sbjct: 13 RLQQELRTLLMSGDPG-ITAFPDGDN---LFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68

Query: 77 PEKPPSVRFHSRINMTCVN 95
          P KPP V+F +      V+
Sbjct: 69 PYKPPVVKFTTPCWHPNVD 87

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 1e-09
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           R+ +++          T      D DD+   ++   +I P    ++   +       + Y
Sbjct: 7   RIQKDINELNL---PKTCDISFSDPDDLL--NFKL-VICPDEGFYKSGKFVFSFKVGQGY 60

Query: 77  PEKPPSVRFHSRINMTCVNHETGVVLFLF 105
           P  PP V+  + +    ++ E  V L + 
Sbjct: 61  PHDPPKVKCETMVYHPNIDLEGNVCLNIL 89

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-09
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 13  PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFC 72
           P   RL +EL       GD  +S   +  +   +  W GTI G   TV+E   Y+L L  
Sbjct: 1   PVGKRLQQELMTLMMS-GDKGISAFPESDN---LFKWVGTIHGAAGTVYEDLRYKLSLEF 56

Query: 73  DKDYPEKPPSVRFHSRINMTCVNHETGVVLFLF 105
              YP   P+V+F +      V+ +  + L + 
Sbjct: 57  PSGYPYNAPTVKFLTPCYHPNVDTQGNISLDIL 89

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 49.7 bits (118), Expect = 3e-09
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 38 MDDGDDIY----MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93
           +    +Y    +  +     GP  T +E   + L +    DYP K PS+ F +RI    
Sbjct: 13 CNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN 72

Query: 94 VNHET 98
          V+  +
Sbjct: 73 VDERS 77

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 5e-09
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCD 73
          R  RL  EL         G ++   D      M      I+G  NT +E  +++L++   
Sbjct: 3  RASRLKRELHMLATEPPPG-ITCWQDKDQ---MDDLRAQILGGANTPYEKGVFKLEVIIP 58

Query: 74 KDYPEKPPSVRFHSRINMTCVNHET 98
          + YP +PP +RF + I    ++   
Sbjct: 59 ERYPFEPPQIRFLTPIYHPNIDSAG 83

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 8e-09
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           R+++E +R       G +    D+ +    R +   I GP ++  EG  ++L+LF  ++Y
Sbjct: 6   RIIKETQRLLAEPVPG-IKAEPDESN---ARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 61

Query: 77  PEKPPSVRFHSRINMTCVNHETGVVLFLFD 106
           P   P VRF ++I    V+    + L +  
Sbjct: 62  PMAAPKVRFMTKIYHPNVDKLGRICLDILK 91

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           RL ++  R +K      +       +   +  W   + GP  T +EG  Y  KL   +++
Sbjct: 5   RLKQDYLRIKKDPVPY-ICAEPLPSN---ILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 60

Query: 77  PEKPPSVRFHSRINMTCVNHETGVVLF 103
           P KPPS+   +       N    + + 
Sbjct: 61  PFKPPSIYMITPNGRFKCNTRLCLSIT 87

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 4e-08
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           RL++ELE   K       +  +D+ +   + +W G I  P N  ++   +++++    +Y
Sbjct: 3   RLMKELEEIRKCGMKNFRNIQVDEAN---LLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 58

Query: 77  PEKPPSVRFHSRINMTCVNHETGVVLFLF 105
           P KPP + F ++I    ++ +  V L + 
Sbjct: 59  PFKPPKITFKTKIYHPNIDEKGQVCLPVI 87

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 7e-08
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 6/85 (7%)

Query: 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL--KLF 71
             R    +    K +     SY  +DG           + G     + G  Y +   L+
Sbjct: 18 LTVRETVNVITLYKDLKPVLDSYVFNDG----SSRELMNLTGTIPVPYRGNTYNIPICLW 73

Query: 72 CDKDYPEKPPSVRFHSRINMTCVNH 96
              YP  PP        +MT    
Sbjct: 74 LLDTYPYNPPICFVKPTSSMTIKTG 98

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-07
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
           L  +    ++    G ++      D   M  W   I G  N+V +G ++QL +    +Y
Sbjct: 8  LLHRDFCDLKENNYKG-ITAKPVSED---MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEY 63

Query: 77 PEKPPSVRFHSRINMTCVNHET 98
             PP V+F +      V+  T
Sbjct: 64 NYAPPVVKFITIPFHPNVDPHT 85

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 43.3 bits (101), Expect = 6e-07
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDY 76
          RLL+EL++  K    G +  G    ++I++  W   I GP +T +   ++  KL   KDY
Sbjct: 7  RLLKELQQLIKDSPPG-IVAGPKSENNIFI--WDCLIQGPPDTPYADGVFNAKLEFPKDY 63

Query: 77 PEKPPSVRFHSRINMTCVN 95
          P  PP + F   I    + 
Sbjct: 64 PLSPPKLTFTPSILHPNIY 82

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 13/97 (13%)

Query: 17  RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPH------------NTVHEGR 64
           RL++EL    +     T  Y ++  +D  +  W   +                       
Sbjct: 8   RLMKELRDIYRSQSYKTGIYSVELINDS-LYDWHVKLQKVDPDSPLHSDLQILKEKEGIE 66

Query: 65  IYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
              L      ++P  PP VR    +         G +
Sbjct: 67  YILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 103

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 36  YGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 95
           +   DG    + S  GTI    +      I  + ++    YP KPP +  +         
Sbjct: 45  FTHSDGTPQLLLSIYGTISTGEDGSSPHSI-PVIMWVPSMYPVKPPFISINLENFDMNTI 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.97
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.97
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.96
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.65
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.45
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	95.57
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	95.34
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	94.86
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	91.13
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	91.1

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-37  Score=202.91  Aligned_cols=99  Identities=19%  Similarity=0.224  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc--eec
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--NMT   92 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i--~HP   92 (118)
                      .|||+||++++++++++|+.....++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++  |||
T Consensus         5 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~--l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hp   82 (117)
T d2a7la1           5 QKRLQKELLALQNDPPPGMTLNEKSVQNS--ITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP   82 (117)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCS--CEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEecCCCC--ceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCccccc
Confidence            47999999999999999863333345667  66999999999999999999999999999999999999999987  999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++|+++|+|.+++.
T Consensus        83 nv~~-~G~iCl~~l~~~Wsp~~ti~  106 (117)
T d2a7la1          83 HVYS-NGHICLSILTEDWSPALSVQ  106 (117)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTSCHH
T ss_pred             cCcC-CCeEEeecCcCCCCCcCcHH
Confidence            9995 67777 99999999988754

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=4.1e-36  Score=203.07  Aligned_cols=105  Identities=50%  Similarity=0.906  Sum_probs=91.3

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      .+|.+||+|||++++|+.+++.+++.+.++|++++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            68999999999999998776667777776666557799999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCC-CCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFD-LNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~-~~w~~~~~~~  116 (118)
                      |||+.++|.|| ++|. ++|+|..++.
T Consensus        83 pnV~~~~G~icl~~l~~~~Wsp~~ti~  109 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHTLRDWKRAYTME  109 (136)
T ss_dssp             TTBCTTTCBBCTTSHHHHTCCTTCCHH
T ss_pred             cccccCCCeEECCCCcccCcCccCcHH
Confidence            99998889999 8775 7899987753

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=8.8e-36  Score=203.78  Aligned_cols=101  Identities=20%  Similarity=0.387  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      +|.|||++|+++|++++++| +.+.+++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         1 s~~kRL~~El~~l~~~~~~g-i~~~~~~~~~--~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   77 (149)
T d1fzya_           1 SRAKRIMKEIQAVKDDPAAH-ITLEFVSESD--IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP   77 (149)
T ss_dssp             CHHHHHHHHHHHHHTCGGGC-EEEEESCSSC--SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             CHHHHHHHHHHHHHHCCCCC-EEEEECCCCc--hhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCC
Confidence            47899999999999999999 4666567778  55999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+..+|.|| +++.++|.|..++.
T Consensus        78 nI~~~~~~~~~~~~~~~W~p~~ti~  102 (149)
T d1fzya_          78 NISSVTGAICLDILKNAWSPVITLK  102 (149)
T ss_dssp             TBCTTTCCBCCGGGTTTCCTTCCHH
T ss_pred             cccCCcceeechhhcccCCCcCCHH
Confidence            9998899999 88999999987764

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=3.4e-35  Score=200.93  Aligned_cols=100  Identities=25%  Similarity=0.437  Sum_probs=89.9

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      +++.|||++|+++|++++++|+ .+. ++++|  ++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++||
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi-~~~-p~~~n--~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGV-SGA-PTEDN--ILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFH   77 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTE-EEE-EETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCE-EEE-ECCCc--hhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccc
Confidence            5678999999999999999995 444 45677  6799999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||+. +|.+| ++|.++|.|..++.
T Consensus        78 PnI~~-~G~iCl~~l~~~w~p~~~i~  102 (149)
T d1z3da1          78 PNVYA-DGSICLDILQNRWSPTYDVA  102 (149)
T ss_dssp             TTBCT-TCBBCCGGGTTSCCTTCCHH
T ss_pred             eeEcC-CCCEEeccccccCCCCCCHH
Confidence            99996 67777 99999999987764

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=4.6e-35  Score=198.50  Aligned_cols=107  Identities=52%  Similarity=0.890  Sum_probs=92.2

Q ss_pred             ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc
Q 033475           10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI   89 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   89 (118)
                      +.++|.+||+||+++++++.+++.++....+.++..+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         2 ~~~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i   81 (139)
T d2a4da1           2 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI   81 (139)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             CccchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCc
Confidence            35789999999999999999988766554443322266999999999999999999999999999999999999999999


Q ss_pred             eeccccCCCceEE-eCCC--CCCcccEEec
Q 033475           90 NMTCVNHETGVVL-FLFD--LNSVHLVFLA  116 (118)
Q Consensus        90 ~HPnV~~~~g~~c-~~L~--~~w~~~~~~~  116 (118)
                      |||||+..+|.|| +.|.  ++|+|.+++.
T Consensus        82 ~HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~  111 (139)
T d2a4da1          82 NMNGVNSSNGVVDPRAISVLAKWQNSYSIK  111 (139)
T ss_dssp             CCTTBCTTTCBBCGGGSHHHHTCCTTCCHH
T ss_pred             ccccCcCCCCEEcceecCcccCCCccCcHH
Confidence            9999999899998 5554  6899988764

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=7.1e-35  Score=198.59  Aligned_cols=98  Identities=28%  Similarity=0.452  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      ++|||++|+++|+++++.|+ .+. ++++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 a~kRL~~E~~~l~~~~~~~i-~~~-~~~~n--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQC-SAG-PVGDD--LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   77 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSE-EEE-EETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCCe-EEE-ECCCc--hhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceee
Confidence            57999999999999999996 444 45677  669999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCCCCCcccEEec
Q 033475           94 VNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        94 V~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |++ +|.+| ++|.++|.|..++.
T Consensus        78 V~~-~G~iCl~~l~~~w~p~~~i~  100 (147)
T d1z2ua1          78 INS-NGSICLDILRSQWSPALTIS  100 (147)
T ss_dssp             BCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             ECC-CCCEeeehhcccCCCCCCHH
Confidence            995 77777 99999999987764

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=6.9e-35  Score=199.83  Aligned_cols=101  Identities=28%  Similarity=0.421  Sum_probs=90.3

Q ss_pred             cchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475           11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN   90 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   90 (118)
                      |+++.|||++|+++|+++++.|+ .+. ++++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi-~~~-p~~~n--~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~   76 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGV-SAS-PLPDN--VMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF   76 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTE-EEE-EETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCE-EEE-ECCCc--HHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCC
Confidence            46788999999999999999995 444 45677  669999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceEE-eCCCCCCcccEEec
Q 033475           91 MTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        91 HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||||+. +|.+| ++|.++|.|..++.
T Consensus        77 HPnI~~-~G~icl~~l~~~W~p~~~i~  102 (153)
T d1ayza_          77 HPNVYA-NGEICLDILQNRWTPTYDVA  102 (153)
T ss_dssp             CTTBCT-TSBBCCGGGTTTCCTTCCHH
T ss_pred             ccCCCC-CCccccccccccCCCcCcHH
Confidence            999996 66666 99999999987653

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=8.4e-35  Score=189.92  Aligned_cols=95  Identities=24%  Similarity=0.359  Sum_probs=85.6

Q ss_pred             HHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccc-eecccc
Q 033475           17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVN   95 (118)
Q Consensus        17 Rl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~   95 (118)
                      ||+||++++++++++|+ .+. ++++|  +++|+++|.||++|||+||.|++++.||++||++||+|+|.|++ +||||+
T Consensus         2 Rl~kEl~~l~~~~~~g~-~~~-~~~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~   77 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINC-TLD-VHPNN--IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY   77 (109)
T ss_dssp             HHHHHHHHHHHSCCTTE-EEE-ECTTC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred             HHHHHHHHHHhCCCCCE-EEE-EcCCc--ccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceEC
Confidence            89999999999999995 554 46778  55999999999999999999999999999999999999999986 899999


Q ss_pred             CCCceEE-eCCCCCCcccEEec
Q 033475           96 HETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        96 ~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      . +|.|| ++|+++|+|.+++-
T Consensus        78 ~-~G~iCl~il~~~Wsp~~ti~   98 (109)
T d2fo3a1          78 S-NGDICLSLLGDDYNPSLSIS   98 (109)
T ss_dssp             T-TSBBCCGGGTTTCCTTCCHH
T ss_pred             C-CCeEEeecccCCCCccCCHH
Confidence            5 67776 99999999988753

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=198.73  Aligned_cols=101  Identities=24%  Similarity=0.321  Sum_probs=88.0

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      +.|.+||++|+++|++++++|+ .+. ++++|  ++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus         1 m~~~~Rl~kE~~~l~~~~~~gi-~~~-p~~~~--~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   76 (154)
T d1yh2a1           1 MQRASRLKRELHMLATEPPPGI-TCW-QDKDQ--MDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYH   76 (154)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTE-EEE-ESSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             CcHHHHHHHHHHHHHHCcCCCE-EEE-ECCcc--hhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCc
Confidence            3578999999999999999995 444 46778  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEEeCCC----CCCcccEEec
Q 033475           92 TCVNHETGVVLFLFD----LNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c~~L~----~~w~~~~~~~  116 (118)
                      |||+.+|++|+++|.    ++|.|.+++.
T Consensus        77 PnV~~~g~icl~~l~~~~~~~w~p~~~i~  105 (154)
T d1yh2a1          77 PNIDSAGRICLDVLKLPPKGAWRPSLNIA  105 (154)
T ss_dssp             TTBCTTCBBCCGGGSCTTTSCCCTTSCHH
T ss_pred             CCcCCCCCcccccccCCccccCCccccHH
Confidence            999965444449996    6899987654

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.1e-34  Score=199.90  Aligned_cols=98  Identities=30%  Similarity=0.378  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      ..|||++|+++|++++++|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        10 ~~kRl~kEl~~l~~~~~~gi-~~~-p~~~d--l~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   85 (156)
T d2e2ca_          10 VSKRLQQELRTLLMSGDPGI-TAF-PDGDN--LFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHCCTTE-EEE-ESSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHhHCCCCCE-EEE-ECCCc--ccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCC
Confidence            47799999999999999996 433 47788  559999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCCCCCcccEEec
Q 033475           94 VNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        94 V~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |+. +|.+| ++|.++|+|..++.
T Consensus        86 v~~-~G~icl~~l~~~Wsp~~~i~  108 (156)
T d2e2ca_          86 VDQ-SGNICLDILKENWTASYDVR  108 (156)
T ss_dssp             BCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             CCC-CCCccccccCCCCCCcccHH
Confidence            996 56666 99999999987754

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=7.6e-35  Score=198.78  Aligned_cols=99  Identities=27%  Similarity=0.322  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      |+.|||++|+++|++++++|+ .+. ++++|  +++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         1 p~~kRl~~El~~l~~~~~~~i-~~~-~~~~d--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   76 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKGI-SAF-PESDN--LFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP   76 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTE-EEE-EETTE--EEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred             CHHHHHHHHHHHHhhCCCCCE-EEE-EcCCc--ccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcc
Confidence            467999999999999999995 444 45677  67999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||+. +|.+| ++|.++|.|.+++.
T Consensus        77 nV~~-~G~icl~~l~~~W~p~~~i~  100 (146)
T d1i7ka_          77 NVDT-QGNISLDILKEKWSALYDVR  100 (146)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             cCCC-CCccccccccccCCCCcCHH
Confidence            9996 45555 99999999987653

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=192.50  Aligned_cols=97  Identities=29%  Similarity=0.475  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecccc
Q 033475           16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN   95 (118)
Q Consensus        16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   95 (118)
                      -||+||++++++++++|+ .+...+++|  +++|+++|.||++|||+||.|+++|+||++||++||+|+|.|++|||||+
T Consensus         2 ~~L~kEl~~l~~~~~~gi-~~~~~~~~d--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~   78 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGF-SAGLIDDND--LYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD   78 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTE-EEEESSTTC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             chHHHHHHHHHhCCCCCE-EEEeCCCCC--ceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccC
Confidence            489999999999999995 555567778  55999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEE-eCCC-------------CCCcccEEec
Q 033475           96 HETGVVL-FLFD-------------LNSVHLVFLA  116 (118)
Q Consensus        96 ~~~g~~c-~~L~-------------~~w~~~~~~~  116 (118)
                      . .|.+| ++|+             ++|+|.+++-
T Consensus        79 ~-~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~  112 (125)
T d2awfa1          79 K-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVE  112 (125)
T ss_dssp             T-TCBBCCGGGSCC---------CTTSCCTTCCHH
T ss_pred             C-CCEEEeccccCccccccccccccCCcCccCcHH
Confidence            6 56666 9995             5699987763

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=9.3e-35  Score=199.31  Aligned_cols=103  Identities=20%  Similarity=0.267  Sum_probs=92.2

Q ss_pred             cccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475            9 SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus         9 ~~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      +++..++|||+||+++|++++++|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         2 ~~~~~~~kRl~kEl~~l~~~~~~gi-~v~-p~~~d--l~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (151)
T d1zdna1           2 NLPPHIIRLVYKEVTTLTADPPDGI-KVF-PNEED--LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK   77 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHSCCTTE-EEE-ECSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCe-EEE-EcCcc--hheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCC
Confidence            4567789999999999999999995 443 56778  5599999999999999999999999999999999999999999


Q ss_pred             ceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           89 INMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        89 i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      +|||||+. +|.+| ++|+++|.|.+++.
T Consensus        78 i~HPnI~~-~G~ic~~~l~~~W~p~~~l~  105 (151)
T d1zdna1          78 IFHPNVGA-NGEICVNVLKRDWTAELGIR  105 (151)
T ss_dssp             CCCTTBCT-TSBBCHHHHTTTCCTTCCHH
T ss_pred             CCCceecC-CCCcccccccccCCccccHH
Confidence            99999995 67777 99999999987753

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=199.12  Aligned_cols=101  Identities=24%  Similarity=0.329  Sum_probs=86.6

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.|||++|+++|++++++|+ .+.+.+++|  ++.|+++|.||+||||+||.|++.|.||++||++||+|+|.|++||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi-~~~p~~e~n--l~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGI-VAGPKSENN--IFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   78 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTE-EEEESSSSC--CSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             HHHHHHHHHHHHHHhhCCCCCE-EEEECCccc--hhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCcee
Confidence            3467899999999999999996 444456678  5599999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEEeCCCC-------------CCcccEEe
Q 033475           92 TCVNHETGVVLFLFDL-------------NSVHLVFL  115 (118)
Q Consensus        92 PnV~~~~g~~c~~L~~-------------~w~~~~~~  115 (118)
                      |||+.+|.+|+++|..             .|+|.+++
T Consensus        79 Pnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti  115 (164)
T d2ucza_          79 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSV  115 (164)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCH
T ss_pred             ceEcCCCCeeeccccCccccccccccccccCCccccH
Confidence            9999754444599954             58877765

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=196.26  Aligned_cols=99  Identities=30%  Similarity=0.492  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      .+.|||++|+++|+++++.|+ .+. ++++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         2 ~~~kRi~~E~~~l~~~~~~gi-~~~-~~~~n--~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP   77 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPNC-SAG-PKGDN--IYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHC   77 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTE-EEE-ESSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHhhCCCCCE-EEE-ECCcc--cceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCc
Confidence            468899999999999999995 444 45677  55999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ||++ .|.+| ++|.++|.|..++.
T Consensus        78 nv~~-~G~iCl~~l~~~W~p~~~l~  101 (148)
T d1y6la_          78 NINS-QGVICLDILKDNWSPALTIS  101 (148)
T ss_dssp             TBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             eECC-CCeEEEEecCCcCCCcEeHH
Confidence            9996 67666 99999999987653

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=2.7e-34  Score=197.17  Aligned_cols=97  Identities=25%  Similarity=0.392  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      ..|||++|+++|++++++|+ .+. ++++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         4 ~~rRl~~E~~~l~~~~~~g~-~~~-p~~~n--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPn   79 (152)
T d1jata_           4 LPKRIIKETEKLVSDPVPGI-TAE-PHDDN--LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN   79 (152)
T ss_dssp             CCHHHHHHHHHHHHSCCTTE-EEE-EETTE--EEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCCE-EEE-EcCCc--cchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCc
Confidence            34699999999999999995 444 45677  679999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCCCCCcccEEe
Q 033475           94 VNHETGVVL-FLFDLNSVHLVFL  115 (118)
Q Consensus        94 V~~~~g~~c-~~L~~~w~~~~~~  115 (118)
                      |+. .|.+| +++.++|.|.+++
T Consensus        80 I~~-~G~icl~~~~~~W~p~~~i  101 (152)
T d1jata_          80 IDR-LGRICLDVLKTNWSPALQI  101 (152)
T ss_dssp             BCT-TCCBCCGGGTTTCCTTCCH
T ss_pred             CCC-CCCeeeccccccCCchhHH
Confidence            995 67777 9999999998765

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=197.14  Aligned_cols=102  Identities=22%  Similarity=0.243  Sum_probs=90.6

Q ss_pred             cchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475           11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN   90 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   90 (118)
                      +..+.+||+||+++++++++.|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         2 ~~~a~~~L~kE~~~l~~~~~~gi-~v~-p~~~n--~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~   77 (148)
T d1yrva1           2 HGRAYLLLHRDFCDLKENNYKGI-TAK-PVSED--MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF   77 (148)
T ss_dssp             GCHHHHHHHHHHHHHHHHCCTTE-EEE-ECSTT--SCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCE-EEE-ECCCc--ccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccc
Confidence            45678899999999999999995 544 45667  569999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceEE-eCCC--CCCcccEEec
Q 033475           91 MTCVNHETGVVL-FLFD--LNSVHLVFLA  116 (118)
Q Consensus        91 HPnV~~~~g~~c-~~L~--~~w~~~~~~~  116 (118)
                      ||||+..+|.+| ++|+  ++|.|..++.
T Consensus        78 HpnV~~~~G~iC~~~l~~~~~W~p~~tl~  106 (148)
T d1yrva1          78 HPNVDPHTGQPCIDFLDNPEKWNTNYTLS  106 (148)
T ss_dssp             CTTBCTTTCCBCCHHHHCGGGCCTTCCHH
T ss_pred             cCceecCcccccccccCchhhcCccccHH
Confidence            999997789888 9985  5899987753

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=194.79  Aligned_cols=100  Identities=22%  Similarity=0.362  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCC---CCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccce
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDG---DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN   90 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~---~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   90 (118)
                      +++||++|+++++++++.|+.+....+.   +|  +++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|
T Consensus         3 a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n--~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (156)
T d2uyza1           3 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMN--LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF   80 (156)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCc--ccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccc
Confidence            5789999999999999999876654332   25  779999999999999999999999999999999999999999999


Q ss_pred             eccccCCCceEE-eCCC--CCCcccEEec
Q 033475           91 MTCVNHETGVVL-FLFD--LNSVHLVFLA  116 (118)
Q Consensus        91 HPnV~~~~g~~c-~~L~--~~w~~~~~~~  116 (118)
                      ||||+. +|.+| ++|.  ++|+|..++.
T Consensus        81 HPnV~~-~G~icl~~l~~~~~W~p~~ti~  108 (156)
T d2uyza1          81 HPNVYP-SGTVSLSILEEDKDWRPAITIK  108 (156)
T ss_dssp             STTBCT-TSBBCCGGGCTTTTCCTTCCHH
T ss_pred             cccccc-cceeeecccCcccccCCcccHH
Confidence            999996 55555 8885  5899987753

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=9.2e-34  Score=193.79  Aligned_cols=97  Identities=24%  Similarity=0.372  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      .|||+||+++|+++++.|+ .+. ++++|  +++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||
T Consensus         4 ~kRl~kEl~~l~~~~~~gi-~~~-p~~~n--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni   79 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGI-KAE-PDESN--ARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV   79 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTE-EEE-ECSSC--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHhCCCCCE-EEE-ECCCc--ccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceE
Confidence            4799999999999999995 444 56778  5599999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCCCCcccEEec
Q 033475           95 NHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        95 ~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      +. +|.+| ++|.++|.|..++.
T Consensus        80 ~~-~G~icl~~l~~~w~p~~~i~  101 (149)
T d1j7db_          80 DK-LGRICLDILKDKWSPALQIR  101 (149)
T ss_dssp             CT-TCBBCCGGGTTSCCTTSCHH
T ss_pred             CC-CCcEehHHhcCCCCCCccHH
Confidence            95 66666 99999999987653

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-33  Score=192.45  Aligned_cols=102  Identities=24%  Similarity=0.330  Sum_probs=88.1

Q ss_pred             cchHHHHHHHHHHHhHcCC---CCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEec
Q 033475           11 VVPRNFRLLEELERGEKGI---GDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS   87 (118)
Q Consensus        11 ~~~~~kRl~kEl~~l~~~~---~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   87 (118)
                      +..+.+||++|+++++++.   ..+ +.+.+ +++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         2 s~~a~~Rl~kE~~~l~~~~~~~~~~-i~~~~-~~~n--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   77 (154)
T d2bepa1           2 ANIAVQRIKREFKEVLKSEETSKNQ-IKVDL-VDEN--FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT   77 (154)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHTTS-EEEEE-CSSS--SSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             chHHHHHHHHHHHHHHHCCCCCCCc-EEEEc-CCCC--hhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecc
Confidence            3456789999999998753   345 56554 4567  559999999999999999999999999999999999999999


Q ss_pred             cceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           88 RINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        88 ~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ++|||||++.+|.+| +++.++|.|..++.
T Consensus        78 ~i~Hpni~~~~g~ic~~~~~~~W~p~~~i~  107 (154)
T d2bepa1          78 KIWHPNISSVTGAICLDILKDQWAAAMTLR  107 (154)
T ss_dssp             CCCBTTBCTTTCBBCCGGGTTTCCTTCCHH
T ss_pred             cCCCCCeeCCCCccccccccccCCCcCCHH
Confidence            999999998789888 99999999987653

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.97  E-value=3.3e-33  Score=190.04  Aligned_cols=95  Identities=23%  Similarity=0.343  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecccc
Q 033475           16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN   95 (118)
Q Consensus        16 kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   95 (118)
                      |||++|+++++++++.|+.++ ..+++|  ++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~-~~~~~n--~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   77 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNI-QVDEAN--LLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   77 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEE-CSSCSS--SSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHhCCCCCeEEE-ECCCCc--ceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCc
Confidence            799999999999999996444 456778  55999998 99999999999999999999999999999999999999999


Q ss_pred             CCCceEE-eCCCC-CCcccEEe
Q 033475           96 HETGVVL-FLFDL-NSVHLVFL  115 (118)
Q Consensus        96 ~~~g~~c-~~L~~-~w~~~~~~  115 (118)
                      . +|.+| ++|.. .|.|..++
T Consensus        78 ~-~G~icl~~l~~~~w~p~~~i   98 (144)
T d1c4zd_          78 E-KGQVCLPVISAENWKPATKT   98 (144)
T ss_dssp             T-TCBBCCTTTSSSSCCTTCCH
T ss_pred             c-CCccccccccCCCCCCcccH
Confidence            6 56666 99985 57776654

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.97  E-value=8.4e-33  Score=189.05  Aligned_cols=97  Identities=20%  Similarity=0.308  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceecc
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC   93 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   93 (118)
                      +.+||++|+++|++++++|+... ..+++|  +..|.++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~-~~~~~~--~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   76 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNL-SSDDAN--VLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN   76 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEE-EECSSC--TTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEE-ecCCCc--eEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcce
Confidence            35799999999999999996444 445667  55999865 899999999999999999999999999999999999999


Q ss_pred             ccCCCceEE-eCCC-CCCcccEEe
Q 033475           94 VNHETGVVL-FLFD-LNSVHLVFL  115 (118)
Q Consensus        94 V~~~~g~~c-~~L~-~~w~~~~~~  115 (118)
                      |++ +|.+| ++|. ++|.|..++
T Consensus        77 I~~-~G~icl~~l~~~~W~p~~~i   99 (150)
T d1wzva1          77 VDE-NGQICLPIISSENWKPCTKT   99 (150)
T ss_dssp             BCT-TCBCCCGGGCTTTCCTTCCH
T ss_pred             ECC-CCCcccccccccCCCchhHH
Confidence            996 56666 9996 578887665

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.4e-32  Score=190.19  Aligned_cols=99  Identities=28%  Similarity=0.498  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhHc-------------CCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCC
Q 033475           14 RNFRLLEELERGEK-------------GIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKP   80 (118)
Q Consensus        14 ~~kRl~kEl~~l~~-------------~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~p   80 (118)
                      +.+||+||+++|++             +...| +.+.+. ++|  +++|+++|.||+||||+||.|+|+|.||++||++|
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~n--l~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~p   77 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHG-VSAQIV-GGD--IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP   77 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------C-EEEEEE-TTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCC-eEEEec-CCc--cceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCC
Confidence            46799999999976             33345 455544 457  66999999999999999999999999999999999


Q ss_pred             CEEEEeccceeccccCCCceEE-eCCCCCCcccEEec
Q 033475           81 PSVRFHSRINMTCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        81 P~v~f~t~i~HPnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |+|+|.|++|||||+..+|.+| ++|.++|.|..++.
T Consensus        78 P~V~F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~  114 (161)
T d2f4za1          78 PKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIR  114 (161)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHH
T ss_pred             cEEEecCCCCCCceECCCCCeecCcccccCCCcccHH
Confidence            9999999999999987889888 99999999987653

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=99.97  E-value=1.7e-32  Score=189.48  Aligned_cols=97  Identities=28%  Similarity=0.458  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      ..||+||+++|++++++|+ .+.+.+++|  ++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus         2 ~~~L~kE~~~l~~~~~~g~-~v~~~~~~d--l~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   78 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGF-SAGLVDDND--IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI   78 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTE-EEEESSTTC--TTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTB
T ss_pred             ChHHHHHHHHHHhCCCCCE-EEEECCCCC--ceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCccc
Confidence            3599999999999999995 555556667  4599999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCC-------------CCcccEEe
Q 033475           95 NHETGVVL-FLFDL-------------NSVHLVFL  115 (118)
Q Consensus        95 ~~~~g~~c-~~L~~-------------~w~~~~~~  115 (118)
                      +. .|.+| ++|..             +|.|..++
T Consensus        79 ~~-~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i  112 (161)
T d1pzva_          79 DK-EGNVCISILHDPGDDKWGYERPEERWLPVHTV  112 (161)
T ss_dssp             CT-TSBBCCGGGCCC---------CCSSCCTTCCH
T ss_pred             CC-CCccchhhcCCcccccccccccccccCccccH
Confidence            96 55555 99864             58887665

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.97  E-value=6.1e-32  Score=186.24  Aligned_cols=98  Identities=13%  Similarity=0.263  Sum_probs=85.3

Q ss_pred             chHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEecccee
Q 033475           12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINM   91 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   91 (118)
                      ..+.+||+||+++|++.+.   +.+..++++|  +..|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~a~~Rl~kEl~~l~~~~~---~~i~~~~~~~--l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~H   75 (157)
T d1y8xa1           2 SAAQLRIQKDINELNLPKT---CDISFSDPDD--LLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   75 (157)
T ss_dssp             CHHHHHHHHHHHTCCCCTT---EEEECSSTTC--TTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CHHHHHHHHHHHHhCCCCC---CcEEEcCCCc--ceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCC
Confidence            4567899999999986543   4566677788  55999988 8999999999999999999999999999999999999


Q ss_pred             ccccCCCceEE-eCCCCCCcccEEec
Q 033475           92 TCVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        92 PnV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |||++ +|.+| +++.++|.|..++.
T Consensus        76 Pnv~~-~G~ic~~~~~~~W~p~~~i~  100 (157)
T d1y8xa1          76 PNIDL-EGNVCLNILREDWKPVLTIN  100 (157)
T ss_dssp             TTBCT-TCBBCCGGGTTTCCTTCCHH
T ss_pred             ccccc-cceeeeeecccCCCCCCcHH
Confidence            99996 56677 99999999987653

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=184.19  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceec
Q 033475           13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT   92 (118)
Q Consensus        13 ~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   92 (118)
                      ++.|||++|++++++++++|+ .+. ++++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|+
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~-~~~-p~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~   76 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYI-CAE-PLPSN--ILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRF   76 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTE-EEE-EETTE--EEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSB
T ss_pred             CHHHHHHHHHHHHHhCCCCCE-EEE-EcCcc--cceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCccc
Confidence            368899999999999999996 444 45678  66999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceEE-eCCCCCCcccEEec
Q 033475           93 CVNHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        93 nV~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      |++..++.|| +++.++|+|..++.
T Consensus        77 ~~~g~~~~~~l~~~~~~Wsp~~ti~  101 (157)
T d2f4wa1          77 KCNTRLCLSITDFHPDTWNPAWSVS  101 (157)
T ss_dssp             CTTSCBC----------CCTTCCHH
T ss_pred             CCCCCeeeeeccccCCCCCccCcHH
Confidence            9986555566 67788999998764

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.96  E-value=1.7e-31  Score=184.23  Aligned_cols=94  Identities=23%  Similarity=0.254  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEEEEEccCCCCCCCCEEEEeccceeccc
Q 033475           15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV   94 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   94 (118)
                      .|||++|+++|.+++..    + .+ +||  +++|.++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~rr~~~e~~~l~~~~~~----~-~~-~d~--~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI   73 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK----V-YP-SDT--VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV   73 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC----E-EE-CSS--TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHhcCCCc----C-CC-CCC--ceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCC
Confidence            58999999999987743    1 22 357  5599999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEE-eCCCCCCcccEEec
Q 033475           95 NHETGVVL-FLFDLNSVHLVFLA  116 (118)
Q Consensus        95 ~~~~g~~c-~~L~~~w~~~~~~~  116 (118)
                      ++.+|.+| ++|.++|.+..++.
T Consensus        74 ~~~~G~vcl~il~~~W~p~~~i~   96 (158)
T d1yf9a1          74 DERSGSVCLDVINQTWTPMYQLE   96 (158)
T ss_dssp             CTTTCBBCHHHHHHHCCTTCCTH
T ss_pred             ccCcccccccccccccCchHhhh
Confidence            97789998 99999999987654

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-30  Score=179.72  Aligned_cols=102  Identities=17%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             chHHHHHHHHHHHhHcCCC--CCceEEeccCCCCcceeEEEEEEEC-CCCCCCCCcE-----------EEEEEEccCCCC
Q 033475           12 VPRNFRLLEELERGEKGIG--DGTVSYGMDDGDDIYMRSWTGTIIG-PHNTVHEGRI-----------YQLKLFCDKDYP   77 (118)
Q Consensus        12 ~~~~kRl~kEl~~l~~~~~--~~~~~~~~~~~~n~~l~~w~~~i~G-p~~tpy~gg~-----------f~~~i~fp~~YP   77 (118)
                      ..+.+||+|||++++++..  .+++.+.. ++||  +++|++.|.| |++|||++|.           |+++|.||++||
T Consensus         3 ~~a~~RL~kEl~~l~k~~~~~~~~~~v~~-~~dn--l~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP   79 (162)
T d1zuoa1           3 VQASDRLMKELRDIYRSQSYKTGIYSVEL-INDS--LYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHTTSEEEEE-ETTE--EEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEeec-CCCc--ccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchh
Confidence            5677899999999998764  45566654 4557  6799999999 8999999876           999999999999


Q ss_pred             CCCCEEEEeccceeccccCCCceEE-eCCC-CCCcccEEec
Q 033475           78 EKPPSVRFHSRINMTCVNHETGVVL-FLFD-LNSVHLVFLA  116 (118)
Q Consensus        78 ~~pP~v~f~t~i~HPnV~~~~g~~c-~~L~-~~w~~~~~~~  116 (118)
                      ++||+|+|.|++||||+...+|.+| ++|. ++|+|..++.
T Consensus        80 ~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~  120 (162)
T d1zuoa1          80 FDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIE  120 (162)
T ss_dssp             SSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHH
T ss_pred             hhcceEEEEEEeeccccccCCceeecccccCCCCCCcccHH
Confidence            9999999999999999654688888 9995 5599988764

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-17  Score=111.28  Aligned_cols=89  Identities=15%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             HHHHHHHHhHcCCC---CCceEEeccCCCCcceeEEEEEEECCCCCCCCCcEEEE--EEEccCCCCCCCCEEEEecc---
Q 033475           17 RLLEELERGEKGIG---DGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL--KLFCDKDYPEKPPSVRFHSR---   88 (118)
Q Consensus        17 Rl~kEl~~l~~~~~---~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~---   88 (118)
                      +..+|+.++.+.-+   ++. . ....+|+  ...|.+.|.|+.+++|+||.|.+  .|.||++||++||.|.|.+.   
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~-~-~f~~~dg--~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~   93 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVL-D-SYVFNDG--SSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSM   93 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEE-E-EEECTTS--CEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTC
T ss_pred             hHHHHHHHHHHhCCCCCCcc-c-eEEeCCC--CceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCc
Confidence            45556666665432   221 2 2234555  56999999999999999999999  55589999999999988753   


Q ss_pred             --ceeccccCCCceEE-eCCCCCCcc
Q 033475           89 --INMTCVNHETGVVL-FLFDLNSVH  111 (118)
Q Consensus        89 --i~HPnV~~~~g~~c-~~L~~~w~~  111 (118)
                        .+|||||. +|.|| ++|++ |++
T Consensus        94 ~~~~h~~V~~-~G~V~lp~L~~-W~~  117 (141)
T d1s1qa_          94 TIKTGKHVDA-NGKIYLPYLHE-WKH  117 (141)
T ss_dssp             EECCSSSBCT-TCBBCCHHHHT-CCT
T ss_pred             cccCCCeECC-CCCCcchhhcC-CCc
Confidence              68999995 78887 99974 554

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=2.6e-14  Score=96.86  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhHcCCC---CCceEEeccCCCCcceeEEEEEEECCCCCCCCCcE---EEEEEEccCCCCCCCCEEEEecc
Q 033475           15 NFRLLEELERGEKGIG---DGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI---YQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        15 ~kRl~kEl~~l~~~~~---~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      .+|+.+|...+.++-+   +..-.+...  |.  ...+.+.+.|.-..+|+|+.   +.+.|.||++||++||.|.|.++
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~--dg--~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~   96 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHS--DG--TPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLE   96 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECT--TS--CEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCT
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecC--CC--CcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecC
Confidence            4577778777766433   121112222  33  33667778888889999996   67888899999999999999865


Q ss_pred             -----------ceeccccCCCceEE-eCCCCCCcccEEe
Q 033475           89 -----------INMTCVNHETGVVL-FLFDLNSVHLVFL  115 (118)
Q Consensus        89 -----------i~HPnV~~~~g~~c-~~L~~~w~~~~~~  115 (118)
                                 ++|||||. +|.|| ++|++-|.+...|
T Consensus        97 ~~~~~~~~~~i~~hp~Vd~-~G~V~lp~L~~W~~~~s~L  134 (152)
T d1uzxa_          97 NFDMNTISSSLPIQEYIDS-NGWIALPILHCWDPAAMNL  134 (152)
T ss_dssp             TCCSCC----CGGGGGBCT-TSCBCCHHHHSCCTTTCCH
T ss_pred             cccccCCCcccccCCCCCC-CCcEehHHhcCCCCccCcH
Confidence                       57999995 68777 9998666665544

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.038  Score=33.54  Aligned_cols=69  Identities=16%  Similarity=0.076  Sum_probs=38.7

Q ss_pred             HHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCC--CCCCCCcEEEEEEEccCCCCCCCCEEEEecc
Q 033475           18 LLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPH--NTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        18 l~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~--~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      +..|+.-|+.-=++.+ ... ...++.......+.+....  +..=......+.+.+|++||..+|.+.+...
T Consensus         6 ~~~EleaL~SIY~d~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1           6 LPSEVEVLESIYLDEL-QVI-KGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             HHHHHHHHHHHSTTTE-EEE-CCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHhHCCCce-EEe-ccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc
Confidence            5678888887444443 322 1222211113334443111  1111224688899999999999999987654

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.036  Score=34.72  Aligned_cols=78  Identities=14%  Similarity=0.064  Sum_probs=41.7

Q ss_pred             ccchHHHHHHHHHHHhHcCCCCCceEEeccCCCCcce--eEEEEEEECCC-CCCCCCcEEEEEEEccCCCCCCCCEEEEe
Q 033475           10 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYM--RSWTGTIIGPH-NTVHEGRIYQLKLFCDKDYPEKPPSVRFH   86 (118)
Q Consensus        10 ~~~~~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l--~~w~~~i~Gp~-~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   86 (118)
                      ....-..+...|+.-|+.-=++.+ ...........-  ....+.+.... +.......+.|.+.||.+||..+|.+.+.
T Consensus         7 ~~~~~~E~Q~~EleaL~SIY~dd~-~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~   85 (137)
T d1ukxa_           7 GMESYSQRQDHELQALEAIYGSDF-QDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTSSSE-EECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             CcccHHHHHHHHHHHHHHHcCCce-EEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEe
Confidence            333345577788888875322222 221111110000  02334443211 22334467999999999999999998876


Q ss_pred             cc
Q 033475           87 SR   88 (118)
Q Consensus        87 t~   88 (118)
                      ..
T Consensus        86 ~~   87 (137)
T d1ukxa_          86 NA   87 (137)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0057  Score=39.60  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhHcCCCCCceEEeccCCCCcceeEEEEEEECCCCCCCCCc----------EEEEEEEccCCCCCCCCEE
Q 033475           14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSV   83 (118)
Q Consensus        14 ~~kRl~kEl~~l~~~~~~~~~~~~~~~~~n~~l~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v   83 (118)
                      =..||+.|++.|-+-     +... ...||    .|.-+=.-++||-|.|-          .|.+++.+|..||..||.+
T Consensus        26 W~~RLKEEy~aLI~Y-----v~nN-K~~dn----dWF~lesn~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi   95 (162)
T d2in1a1          26 WVQRLKEEYQSLIRY-----VENN-KNADN----DWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEI   95 (162)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHH-HHTTC----CCEEEEECTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             HHHHHHHHHHHHHHH-----HHhc-ccccC----CeEEeccCCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcce
Confidence            467999999987541     1100 01111    22211122444444442          3445566799999999998


Q ss_pred             EEecc-ceeccccCCCceEE
Q 033475           84 RFHSR-INMTCVNHETGVVL  102 (118)
Q Consensus        84 ~f~t~-i~HPnV~~~~g~~c  102 (118)
                      ..-.- ---.-.| .||.+|
T Consensus        96 ~lPeLdGKTaKMY-RGGkIC  114 (162)
T d2in1a1          96 AVPELDGKTAKMY-RGGKIC  114 (162)
T ss_dssp             BCGGGSSSCSSSC-GGGBCC
T ss_pred             eccccCCchhhhh-cCceee
Confidence            76420 0011224 588888

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.081  Score=32.75  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             CcEEEEEEEccCCCCCCCCEEEEecc
Q 033475           63 GRIYQLKLFCDKDYPEKPPSVRFHSR   88 (118)
Q Consensus        63 gg~f~~~i~fp~~YP~~pP~v~f~t~   88 (118)
                      .-...+.+.+|.+||..+|.|.....
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~~~   90 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVRSV   90 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             CceEEEEEEecCcCCCcCCceeccCC
Confidence            45688999999999999999977643

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.12  Score=32.14  Aligned_cols=24  Identities=17%  Similarity=0.081  Sum_probs=20.5

Q ss_pred             cEEEEEEEccCCCCCCCCEEEEec
Q 033475           64 RIYQLKLFCDKDYPEKPPSVRFHS   87 (118)
Q Consensus        64 g~f~~~i~fp~~YP~~pP~v~f~t   87 (118)
                      -...+.+.+|++||..+|.|...+
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~   91 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS   91 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec
Confidence            457888999999999999997664