Citrus Sinensis ID: 033480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVIKD
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHcccccEEEEEccccEEEcccccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHcccccccccccEEcHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHccHHHHHHcccccEEEEEccEEEcccccccHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHccccHHHHHHHcccHHHHHHHHHccccccEEEcc
Coil and Loop (DISEMBL)
miakcsvqsndphlfQTLNGLRHIAETRRFKAWLLDqfgvlhdgkkpypgaiSTLEMLATTGAKMVVIsnssrrasttidklkslgfdpslfagaitsgeLTHQYLLRLIIASSVIKD
Flexible Loop (DISEMBL)
miakcsvqsndphlfQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVvisnssrraSTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVIKD
Low Complexity Region (SEG)
MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVIKD
Disordered region (IsUnstruct)
************HLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN******TTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSV***
Disordered Region (DISOPRED)
*********************RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIAS*VIK*
Disordered Region (DISEMBL)
********SNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVIKD
Disordered Region (DISPRO)
************HLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVIKD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSVIKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q3ZBF9	296	Pyridoxal phosphate phosp	yes	no	0.669	0.266	0.369	2e-05
Q96GD0	296	Pyridoxal phosphate phosp	yes	no	0.661	0.263	0.361	7e-05
Q00472	298	4-nitrophenylphosphatase	yes	no	0.423	0.167	0.36	0.0005
P60487	292	Pyridoxal phosphate phosp	yes	no	0.618	0.25	0.358	0.0007
Q8VD52	309	Pyridoxal phosphate phosp	yes	no	0.618	0.236	0.358	0.0007

>sp|Q3ZBF9|PLPP_BOVIN Pyridoxal phosphate phosphatase OS=Bos taurus GN=PDXP PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 18  RAQGVLFDCNGVLWNGERAVPGAPELLERLAQAGKATLFVSNNSRRARPELALRFARLGF 77

Query: 88  ----DPSLFAGAITSGELTHQYLL 107
                  LF+ A+ +  L  Q LL
Sbjct: 78  GGLRSEQLFSSALCAARLLRQRLL 101

Protein serine phosphatase that dephosphorylates 'Ser-3' in cofilin and probably also dephosphorylates phospho-serine residues in DSTN. Regulates cofilin-dependent actin cytoskeleton reorganization. Required for normal progress through mitosis and normal cytokinesis. Does not dephosphorylate phospho-threonines in LIMK1. Does not dephosphorylate peptides containing phospho-tyrosine. Pyridoxal phosphate phosphatase. Has some activity towards pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PMP) and pyridoxine 5'-phosphate (PNP), with a highest activity with PLP followed by PNP.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 7EC: 4

>sp|Q96GD0|PLPP_HUMAN Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 18  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 77

Query: 88  D----PSLFAGAITSGELTHQYL 106
                  LF+ A+ +  L  Q L
Sbjct: 78  GGLRAEQLFSSALCAARLLRQRL 100

Protein serine phosphatase that dephosphorylates 'Ser-3' in cofilin and probably also dephosphorylates phospho-serine residues in DSTN. Regulates cofilin-dependent actin cytoskeleton reorganization. Required for normal progress through mitosis and normal cytokinesis. Does not dephosphorylate phospho-threonines in LIMK1. Does not dephosphorylate peptides containing phospho-tyrosine. Pyridoxal phosphate phosphatase. Has some activity towards pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PMP) and pyridoxine 5'-phosphate (PNP), with a highest activity with PLP followed by PNP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 7

EC: 4

>sp|Q00472|PNPP_SCHPO 4-nitrophenylphosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pho2 PE=4 SV=2

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT 78
          +F  +L D  GVL  G KP PG   T+++L + G +++ +SN+S ++  T
Sbjct: 17 KFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRET 66

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|P60487|PLPP_MOUSE Pyridoxal phosphate phosphatase OS=Mus musculus GN=Pdxp PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 34  LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF----D 88
           L D  GVL +G++  PGA   L+ LA  G   + +SN+SRRA   +  +   LGF     
Sbjct: 23  LFDCDGVLWNGERIVPGAPELLQRLARAGKNTLFVSNNSRRARPELALRFARLGFAGLRA 82

Query: 89  PSLFAGAITSGELTHQYL 106
             LF+ A+ +  L  Q L
Sbjct: 83  EQLFSSALCAARLLRQRL 100

Protein serine phosphatase that dephosphorylates 'Ser-3' in cofilin and probably also dephosphorylates phospho-serine residues in DSTN. Regulates cofilin-dependent actin cytoskeleton reorganization. Required for normal progress through mitosis and normal cytokinesis. Does not dephosphorylate phospho-threonines in LIMK1. Does not dephosphorylate peptides containing phospho-tyrosine. Pyridoxal phosphate phosphatase. Has some activity towards pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PMP) and pyridoxine 5'-phosphate (PNP), with a highest activity with PLP followed by PNP.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 7

EC: 4

>sp|Q8VD52|PLPP_RAT Pyridoxal phosphate phosphatase OS=Rattus norvegicus GN=Pdxp PE=1 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 34  LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGFD---- 88
           L D  GVL +G++  PGA   L+ LA  G   + +SN+SRRA   +  +   LGF     
Sbjct: 23  LFDCDGVLWNGERIVPGAPELLQRLAQAGKATLFVSNNSRRARPELALRFARLGFTGLRA 82

Query: 89  PSLFAGAITSGELTHQYL 106
             LF+ A+ +  L  Q L
Sbjct: 83  EELFSSAVCAARLLRQRL 100

Protein serine phosphatase that dephosphorylates 'Ser-3' in cofilin and probably also dephosphorylates phospho-serine residues in DSTN. Regulates cofilin-dependent actin cytoskeleton reorganization. Required for normal progress through mitosis and normal cytokinesis. Does not dephosphorylate phospho-threonines in LIMK1. Does not dephosphorylate peptides containing phospho-tyrosine. Pyridoxal phosphate phosphatase. Has some activity towards pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PMP) and pyridoxine 5'-phosphate (PNP), with a highest activity with PLP followed by PNP.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
255567758	313	catalytic, putative [Ricinus communis] g	0.915	0.345	0.777	1e-45
413968592	223	HAD superfamily protein [Solanum tuberos	0.898	0.475	0.770	2e-42
224127222	308	predicted protein [Populus trichocarpa]	0.864	0.331	0.794	1e-41
42567769	306	haloacid dehalogenase-like hydrolase dom	0.838	0.323	0.75	2e-37
19310550	316	unknown protein [Arabidopsis thaliana]	0.838	0.313	0.75	2e-37
297807077	306	hypothetical protein ARALYDRAFT_909002 [	0.838	0.323	0.740	5e-37
356521455	315	PREDICTED: uncharacterized hydrolase yut	0.915	0.342	0.754	2e-35
225434150	314	PREDICTED: uncharacterized hydrolase yut	0.915	0.343	0.724	3e-35
356500114	315	PREDICTED: uncharacterized hydrolase yut	0.915	0.342	0.754	8e-35
357475623	312	hypothetical protein MTR_4g087590 [Medic	0.906	0.342	0.759	3e-34

>gi|255567758|ref|XP_002524857.1| catalytic, putative [Ricinus communis] gi|223535820|gb|EEF37481.1| catalytic, putative [Ricinus communis]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 100/108 (92%)

Query: 1   MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLAT 60
           M+ + S++ N+ HLFQT NGL+H+AETRRFKAWLLDQFGVLHDGK+PYPGAISTL+ +A+
Sbjct: 1   MMPQSSIKYNEAHLFQTFNGLQHLAETRRFKAWLLDQFGVLHDGKQPYPGAISTLKKIAS 60

Query: 61  TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           +GAKMV+ISNSSRRASTT+DK+KSLGFDPSLF GAITSGELTHQ+L R
Sbjct: 61  SGAKMVIISNSSRRASTTMDKMKSLGFDPSLFVGAITSGELTHQFLQR 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413968592|gb|AFW90633.1| HAD superfamily protein [Solanum tuberosum]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 97/109 (88%), Gaps = 3/109 (2%)

Query: 1   MIAKC-SVQSNDPHL--FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEM 57
           M+ +C SVQS++P    FQTLNG++H+AE+RRFKAW LDQFGVLHDGK+PYPGAIS LE 
Sbjct: 1   MMGRCLSVQSSNPTELKFQTLNGIQHLAESRRFKAWFLDQFGVLHDGKQPYPGAISALEK 60

Query: 58  LATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106
           LAT GAKMV+ISNSSRRASTT++KL+SLGFDPSLF GAI SGELTHQYL
Sbjct: 61  LATFGAKMVIISNSSRRASTTLEKLRSLGFDPSLFIGAIMSGELTHQYL 109

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127222|ref|XP_002329430.1| predicted protein [Populus trichocarpa] gi|222870480|gb|EEF07611.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 93/102 (91%)

Query: 7   VQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMV 66
           +QS++  LFQT NGL+HIA+T +FKAW LDQFGVLHDGK+PYPGAISTL+ LATTGAKMV
Sbjct: 2   LQSSELQLFQTFNGLQHIAKTHQFKAWFLDQFGVLHDGKQPYPGAISTLQKLATTGAKMV 61

Query: 67  VISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           +ISNSSRRASTT++K+KSLGFD SLF GAITSGELTHQYL R
Sbjct: 62  IISNSSRRASTTMEKMKSLGFDTSLFLGAITSGELTHQYLQR 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567769|ref|NP_196608.2| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gi|50198963|gb|AAT70484.1| At5g10460 [Arabidopsis thaliana] gi|332004162|gb|AED91545.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 86/104 (82%), Gaps = 5/104 (4%)

Query: 5   CSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK 64
           CS Q     L Q +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK
Sbjct: 3   CSSQ-----LSQPMNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAK 57

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           +V+ISNSSRRASTT++KLK LGFDPS F GAITSGELTHQ L R
Sbjct: 58  IVIISNSSRRASTTMEKLKGLGFDPSFFTGAITSGELTHQSLQR 101

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19310550|gb|AAL85008.1| unknown protein [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 86/104 (82%), Gaps = 5/104 (4%)

Query: 5   CSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK 64
           CS Q     L Q +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK
Sbjct: 13  CSSQ-----LSQPMNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAK 67

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           +V+ISNSSRRASTT++KLK LGFDPS F GAITSGELTHQ L R
Sbjct: 68  IVIISNSSRRASTTMEKLKGLGFDPSFFTGAITSGELTHQSLQR 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807077|ref|XP_002871422.1| hypothetical protein ARALYDRAFT_909002 [Arabidopsis lyrata subsp. lyrata] gi|297317259|gb|EFH47681.1| hypothetical protein ARALYDRAFT_909002 [Arabidopsis lyrata subsp. lyrata]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 86/104 (82%), Gaps = 5/104 (4%)

Query: 5   CSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK 64
           CS Q + P     +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK
Sbjct: 3   CSSQISQP-----MNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAK 57

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           +V+ISNSSRRASTT++KLK LGFDPS F GAITSGELTHQ L R
Sbjct: 58  IVIISNSSRRASTTMEKLKGLGFDPSYFTGAITSGELTHQSLQR 101

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521455|ref|XP_003529371.1| PREDICTED: uncharacterized hydrolase yutF-like [Glycine max]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 91/110 (82%), Gaps = 2/110 (1%)

Query: 1   MIAKCSVQSND--PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEML 58
           MI +CSV      P  FQ LNGLR +AETRRFK WLLDQFGVLHDGK+PYPGAISTLE +
Sbjct: 1   MIPRCSVSPPQIRPFQFQNLNGLRQLAETRRFKVWLLDQFGVLHDGKQPYPGAISTLENI 60

Query: 59  ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           A TGAKMV+ISNSSRR+S TI+K+K LGFD SLF GAITSGELTHQYL R
Sbjct: 61  AKTGAKMVIISNSSRRSSVTIEKVKGLGFDASLFLGAITSGELTHQYLQR 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434150|ref|XP_002278008.1| PREDICTED: uncharacterized hydrolase yutF [Vitis vinifera] gi|296084318|emb|CBI24706.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 95/109 (87%), Gaps = 1/109 (0%)

Query: 1   MIAKCSVQ-SNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLA 59
           M+ +CS+  S+D  LF T NG++ +++T  FKAW LDQFGVLHDGK+PYPGAISTLE LA
Sbjct: 1   MMPRCSISPSSDVQLFHTFNGIQQLSQTHHFKAWFLDQFGVLHDGKQPYPGAISTLEKLA 60

Query: 60  TTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           T+GAKMV+ISNSSRR+S TI+K+KSLGFDPSLF GAITSGELTHQ+LLR
Sbjct: 61  TSGAKMVIISNSSRRSSITIEKMKSLGFDPSLFVGAITSGELTHQHLLR 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500114|ref|XP_003518879.1| PREDICTED: uncharacterized hydrolase yutF-like [Glycine max]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 90/110 (81%), Gaps = 2/110 (1%)

Query: 1   MIAKCSVQSND--PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEML 58
           M  KCSV      P  FQ LNGLR +AETRRFK WLLDQFGVLHDGK+PYPGAISTLE +
Sbjct: 1   MNPKCSVPPPQIRPFQFQNLNGLRQLAETRRFKGWLLDQFGVLHDGKEPYPGAISTLENI 60

Query: 59  ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           A TGAKMV+ISNSSRR+S TI+K+K LGFD SLF GAITSGELTHQYL R
Sbjct: 61  AKTGAKMVIISNSSRRSSVTIEKVKGLGFDASLFLGAITSGELTHQYLQR 110

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475623|ref|XP_003608097.1| hypothetical protein MTR_4g087590 [Medicago truncatula] gi|355509152|gb|AES90294.1| hypothetical protein MTR_4g087590 [Medicago truncatula]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 90/108 (83%), Gaps = 1/108 (0%)

Query: 1   MIAKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLAT 60
           MI KCS  S  P  FQT  GLR +AETRRFK WLLDQFGVLHDGK+PYPGAISTLE +A 
Sbjct: 1   MIPKCS-SSLHPLQFQTFTGLRQLAETRRFKVWLLDQFGVLHDGKQPYPGAISTLENIAK 59

Query: 61  TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
           TG KMV+ISNSSRR+S T++K+KSLGFD SLF GAITSGELTHQYL R
Sbjct: 60  TGGKMVIISNSSRRSSVTLEKVKSLGFDASLFLGAITSGELTHQYLQR 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2142454	306	AT5G10460 "AT5G10460" [Arabido	0.805	0.310	0.789	9.2e-36
TIGR_CMR|SPO_3151	310	SPO_3151 "HAD-superfamily subf	0.940	0.358	0.247	8e-07
UNIPROTKB|J9NUR4	296	PDXP "Uncharacterized protein"	0.677	0.270	0.364	1.2e-05
UNIPROTKB|F1MW60	296	PDXP "Pyridoxal phosphate phos	0.669	0.266	0.369	1.5e-05
UNIPROTKB|Q3ZBF9	296	PDXP "Pyridoxal phosphate phos	0.669	0.266	0.369	1.5e-05
ASPGD|ASPL0000040358	308	AN2970 [Emericella nidulans (t	0.686	0.262	0.301	4.5e-05
UNIPROTKB|Q96GD0	296	PDXP "Pyridoxal phosphate phos	0.661	0.263	0.361	5.4e-05
POMBASE|SPBC15D4.15	298	pho2 "4-nitrophenylphosphatase	0.533	0.211	0.328	5.5e-05
RGD|1586212	309	Pdxp "pyridoxal (pyridoxine, v	0.618	0.236	0.358	0.00021
UNIPROTKB|G3N2C5	132	G3N2C5 "Uncharacterized protei	0.805	0.719	0.277	0.00021

TAIR|locus:2142454 AT5G10460 "AT5G10460" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 75/95 (78%), Positives = 83/95 (87%)

Query:    14 LFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73
             L Q +NGL+ I ETR FKAWLLDQ+GVLHDGKKPYPGAISTL+ LAT GAK+V+ISNSSR
Sbjct:     7 LSQPMNGLKDIVETRNFKAWLLDQYGVLHDGKKPYPGAISTLKNLATAGAKIVIISNSSR 66

Query:    74 RASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108
             RASTT++KLK LGFDPS F GAITSGELTHQ L R
Sbjct:    67 RASTTMEKLKGLGFDPSFFTGAITSGELTHQSLQR 101

GO:0016787 "hydrolase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TIGR_CMR|SPO_3151 SPO_3151 "HAD-superfamily subfamily IIA hydrolase, TIGR01459" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 119 (46.9 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 28/113 (24%), Positives = 52/113 (46%)

Query:     3 AKCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG 62
             A  +V   DP + Q +  L  I+E  R++A  +D +G +H+G   YP A++ L+     G
Sbjct:     9 ALATVSKPDPDMTQIITALAEISE--RYRALFVDLWGCVHNGVTAYPEAVAALQAYRAAG 66

Query:    63 AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLIIASSV 115
               +V+++NS +  +    +L         +    TSG+     + R  +   V
Sbjct:    67 GIVVLVTNSPKPRAGVATQLSQFKVPQDAYDTIATSGDSARSAMFRGAVGQKV 119

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|J9NUR4 PDXP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 31/85 (36%), Positives = 44/85 (51%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct:    18 RTQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 77

Query:    88 D----PSLFAGAITSGELTHQYLLR 108
                    +F+ A+ +  L  Q LLR
Sbjct:    78 GGLRAEQVFSSALCAARLLRQRLLR 102

GO:0016791 "phosphatase activity" evidence=IEA

UNIPROTKB|F1MW60 PDXP "Pyridoxal phosphate phosphatase" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 31/84 (36%), Positives = 43/84 (51%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct:    18 RAQGVLFDCDGVLWNGERAVPGAPELLERLAQAGKATLFVSNNSRRARPELALRFARLGF 77

Query:    88 ----DPSLFAGAITSGELTHQYLL 107
                    LF+ A+ +  L  Q LL
Sbjct:    78 GGLRSEQLFSSALCAARLLRQRLL 101

GO:0071318 "cellular response to ATP" evidence=IEA

GO:0070938 "contractile ring" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0032465 "regulation of cytokinesis" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031247 "actin rod assembly" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030836 "positive regulation of actin filament depolymerization" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0007088 "regulation of mitosis" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

UNIPROTKB|Q3ZBF9 PDXP "Pyridoxal phosphate phosphatase" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 31/84 (36%), Positives = 43/84 (51%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct:    18 RAQGVLFDCNGVLWNGERAVPGAPELLERLAQAGKATLFVSNNSRRARPELALRFARLGF 77

Query:    88 ----DPSLFAGAITSGELTHQYLL 107
                    LF+ A+ +  L  Q LL
Sbjct:    78 GGLRSEQLFSSALCAARLLRQRLL 101

GO:0007088 "regulation of mitosis" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0030027 "lamellipodium" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0032587 "ruffle membrane" evidence=ISS

GO:0070938 "contractile ring" evidence=ISS

GO:0032465 "regulation of cytokinesis" evidence=ISS

GO:0030836 "positive regulation of actin filament depolymerization" evidence=ISS

GO:0006470 "protein dephosphorylation" evidence=IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0031258 "lamellipodium membrane" evidence=IEA

GO:0033883 "pyridoxal phosphatase activity" evidence=IEA

GO:0004647 "phosphoserine phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000040358 AN2970 [Emericella nidulans (taxid:162425)]

 Score = 103 (41.3 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 25/83 (30%), Positives = 45/83 (54%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             +F  +L D  GVL  G   +PG + TLE+L + G ++V ++N+S ++      KL++LG 
Sbjct:    22 KFDVFLFDCDGVLWSGDHLFPGTVETLELLRSRGKQVVFVTNNSTKSRADYKRKLETLGI 81

Query:    88 DPSLFAGAITSGELTHQYLLRLI 110
              P+      +S      Y+ R++
Sbjct:    82 -PATTEEIFSSSYSASIYISRIL 103

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0046196 "4-nitrophenol catabolic process" evidence=IEA

UNIPROTKB|Q96GD0 PDXP "Pyridoxal phosphate phosphatase" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 30/83 (36%), Positives = 42/83 (50%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
             R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct:    18 RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 77

Query:    88 D----PSLFAGAITSGELTHQYL 106
                    LF+ A+ +  L  Q L
Sbjct:    78 GGLRAEQLFSSALCAARLLRQRL 100

GO:0046872 "metal ion binding" evidence=IEA

GO:0004647 "phosphoserine phosphatase activity" evidence=IEA

GO:0033883 "pyridoxal phosphatase activity" evidence=IEA

GO:0031258 "lamellipodium membrane" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA

GO:0030836 "positive regulation of actin filament depolymerization" evidence=IMP

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0032587 "ruffle membrane" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0070938 "contractile ring" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0032465 "regulation of cytokinesis" evidence=IMP

GO:0007088 "regulation of mitosis" evidence=IMP

GO:0031072 "heat shock protein binding" evidence=IDA

GO:0031247 "actin rod assembly" evidence=IDA

GO:0071318 "cellular response to ATP" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

POMBASE|SPBC15D4.15 pho2 "4-nitrophenylphosphatase" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT-IDKLKSLGF 87
             +F  +L D  GVL  G KP PG   T+++L + G +++ +SN+S ++  T ++K+   G 
Sbjct:    17 KFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRETYMNKINEHGI 76

Query:    88 DPSL 91
                L
Sbjct:    77 AAKL 80

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IDA

GO:0004035 "alkaline phosphatase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006470 "protein dephosphorylation" evidence=ISO

GO:0006796 "phosphate-containing compound metabolic process" evidence=IC

GO:0008270 "zinc ion binding" evidence=IDA

GO:0046196 "4-nitrophenol catabolic process" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

GO:0065007 "biological regulation" evidence=NAS

RGD|1586212 Pdxp "pyridoxal (pyridoxine, vitamin B6) phosphatase" [Rattus norvegicus (taxid:10116)]

 Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query:    34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGFD---- 88
             L D  GVL +G++  PGA   L+ LA  G   + +SN+SRRA   +  +   LGF     
Sbjct:    23 LFDCDGVLWNGERIVPGAPELLQRLAQAGKATLFVSNNSRRARPELALRFARLGFTGLRA 82

Query:    89 PSLFAGAITSGELTHQYL 106
               LF+ A+ +  L  Q L
Sbjct:    83 EELFSSAVCAARLLRQRL 100

GO:0004647 "phosphoserine phosphatase activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0006470 "protein dephosphorylation" evidence=ISO;ISS

GO:0007088 "regulation of mitosis" evidence=ISO;ISS

GO:0015629 "actin cytoskeleton" evidence=ISO;ISS

GO:0016791 "phosphatase activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=ISO;ISS

GO:0030496 "midbody" evidence=ISO;ISS

GO:0030836 "positive regulation of actin filament depolymerization" evidence=ISO;ISS

GO:0031072 "heat shock protein binding" evidence=IEA;ISO

GO:0031247 "actin rod assembly" evidence=IEA;ISO

GO:0031258 "lamellipodium membrane" evidence=IEA

GO:0032154 "cleavage furrow" evidence=ISO;ISS

GO:0032465 "regulation of cytokinesis" evidence=ISO;ISS

GO:0032587 "ruffle membrane" evidence=ISO;ISS

GO:0033883 "pyridoxal phosphatase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070938 "contractile ring" evidence=ISO;ISS

GO:0071318 "cellular response to ATP" evidence=IEA;ISO

UNIPROTKB|G3N2C5 G3N2C5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 28/101 (27%), Positives = 47/101 (46%)

Query:    24 IAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKL 82
             +A  R  KA L+D  G LH      PGA   L+ L  T   +  ++N+++ +   + ++L
Sbjct:     1 MATRRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKESKQDLLERL 60

Query:    83 KSLGFDPS---LFAGAITSGELTHQYLLR--LIIASSVIKD 118
             K L FD S   +F     +  L  Q  +R  L++    + D
Sbjct:    61 KKLEFDISEDEIFTSLTAARNLVEQKQVRPMLLVDDRALPD 101

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_120000092	hypothetical protein (308 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.1599.1	hypothetical protein (424 aa)	•								0.652
	eugene3.01370007	SubName- Full=Putative uncharacterized protein; (305 aa)			•						0.465
	gw1.X.1500.1	SubName- Full=Putative uncharacterized protein; (303 aa)			•						0.461
	estExt_fgenesh4_pg.C_LG_VIII0664	phosphoglycolate phosphatase (EC-3.1.3.18) (321 aa)			•						0.435

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
TIGR01459	242	TIGR01459, HAD-SF-IIA-hyp4, HAD-superfamily class	2e-17
pfam13344	101	pfam13344, Hydrolase_6, Haloacid dehalogenase-like	3e-17
COG0647	269	COG0647, NagD, Predicted sugar phosphatases of the	8e-15
TIGR01452	279	TIGR01452, PGP_euk, phosphoglycolate/pyridoxal pho	1e-06
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	3e-06
TIGR02253	221	TIGR02253, CTE7, HAD superfamily (subfamily IA) hy	5e-06
TIGR01460	236	TIGR01460, HAD-SF-IIA, Haloacid Dehalogenase Super	5e-06
COG0637	221	COG0637, COG0637, Predicted phosphatase/phosphohex	1e-04
PLN02645	311	PLN02645, PLN02645, phosphoglycolate phosphatase	2e-04

>gnl|CDD|130526 TIGR01459, HAD-SF-IIA-hyp4, HAD-superfamily class IIA hydrolase, TIGR01459

 Score = 74.2 bits (182), Expect = 2e-17
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88
            +  +LLD +GV+ DG   YPGA+  L  +   G  +  +SNS R   +    LKSLG +
Sbjct: 7   DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66

Query: 89  PSLFAGAITSGELTHQYLLRL 109
             L    I+SGE+  Q +L  
Sbjct: 67  ADLPEMIISSGEIAVQMILES 87

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily model). Length = 242

>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase

 Score = 70.5 bits (174), Expect = 3e-17
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 33  WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSL 91
           +L D  GVL  G +P PGA   L  L   G  +V ++N+S R+      KL+ LGFD   
Sbjct: 1   FLFDVDGVLWRGGEPIPGAAEALNALRAAGKPVVFVTNNSSRSREQYAKKLRKLGFDVD- 59

Query: 92  FAGAITSGELTHQYL 106
               ITS      YL
Sbjct: 60  EDEVITSATAAADYL 74

This family is part of the HAD superfamily. Length = 101

>gnl|CDD|223720 COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

 Score = 67.6 bits (166), Expect = 8e-15
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGF 87
           ++  +L D  GVL+ G +  PGA   L+ L   G  ++ ++N+S R       +L SLG 
Sbjct: 7   KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGG 66

Query: 88  DPSLFAGAITSGELTHQYLLR 108
                   +TSG+ T  YL +
Sbjct: 67  VDVTPDDIVTSGDATADYLAK 87

Length = 269

>gnl|CDD|233420 TIGR01452, PGP_euk, phosphoglycolate/pyridoxal phosphate phosphatase family

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87
           R + ++ D  GVL  G++  PGA   L+ LA  G   + ++N+S ++ +    K   LGF
Sbjct: 1   RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGF 60

Query: 88  DPS---LFAGAITSGELTHQ 104
           +     LF+ A+ +  L  Q
Sbjct: 61  NGLAEQLFSSALCAARLLRQ 80

PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In mammals, PGP is found in many tissues, notably in red blood cells where P-glycolate is and important activator of the hydrolysis of 2,3-bisphosphoglycerate, a major modifier of the oxygen affinity of hemoglobin. Pyridoxal phosphate (PLP, Vitamin B6) phosphatase is involved in the degradation of PLP in mammals and is widely distributed in human tissues including erythrocyes. The enzymes described here are members of the Haloacid dehalogenase superfamily of hydrolase enzymes (pfam00702). Unlike the bacterial PGP equivalog (TIGR01449), which is a member of class (subfamily) I, these enzymes are members of class (subfamily) II. These two families have almost certainly arisen from convergent evolution (although these two ancestors may themselves have diverged from a more distant HAD superfamily progenitor). The primary seed sequence for this model comes from Chlamydomonas reinhardtii, a photosynthetic alga. The enzyme has been purified and characterized and these data are fully consistent with the assignment of function as a PGPase involved in photorespiration. The second seed, from Homo sapiens chromosome 22 has been characterized as a pyridoxal phosphatase. Biochemical characterization of partially purified PGP's from various tissues including red blood cells have been performed while one gene for PGP has been localized to chromosome 16p13.3. The sequence used here maps to chromosome 22. There is indeed a related gene on chromosome 16 (and it is expressed, since EST's are found) which shows 46% identity and 59% positives by BLAST2 (E=1e-66). The chromosome 16 gene is not in evidence in nraa but translated from the genomic sequence would score 372.4 (E=7.9e-113) versus This model, well above trusted. The third seed, from C. elegans, is only supported by sequence similarity. This model is limited to eukaryotic species including S. pombe and S. cerevisiae, although several archaea score between the trusted and noise cutoffs. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase d. Length = 279

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 32  AWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82
           A L D  G L D +         + YPG    L+ L   G K+ + +N SRR    ++ L
Sbjct: 1   AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRRE--VLELL 58

Query: 83  KSLGFDPSLFAGAITSGELTHQYLLRLII 111
           + LG D   F   ITS      Y    + 
Sbjct: 59  EELGLD-DYFDPVITSNGAAIYYPKEGLF 86

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase, TIGR02253

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 9   SNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGK----KPYPGAISTLEMLATTGAK 64
           SN P  F  L  +R + E    K  +       H  K    + YPG   TL  L  +G +
Sbjct: 56  SNYPTHFDYL--IRRLWEEYNPK-LVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYR 112

Query: 65  MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
           + +I++         +KL+ LG     F   ITS E 
Sbjct: 113 LGIITDGLPVKQ--WEKLERLGVRD-FFDAVITSEEE 146

This family of sequences from archaea and metazoans includes the human uncharacterized protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Length = 221

>gnl|CDD|233422 TIGR01460, HAD-SF-IIA, Haloacid Dehalogenase Superfamily Class (subfamily) IIA

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 34  LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKLKSLGFDPSLF 92
           L D  GVL  G KP PGA   L  L   G  +V ++N+S R+     +KL SL       
Sbjct: 2   LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSP 61

Query: 93  AGAITSGELTHQYLL 107
              ITSG +T   L 
Sbjct: 62  DQIITSGSVTKDLLR 76

This model represents one structural subclass of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The classes are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Class I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Class II consists of sequences in which the capping domain is found between the second and third motifs. Class III sequences have no capping domain in iether of these positions. The Class IIA capping domain is predicted by PSI-PRED to consist of a mixed alpha-beta fold with the basic pattern: Helix-Helix-Helix-Sheet-Helix-Loop-Sheet-Helix-Sheet- Helix. Presently, this subfamily encompasses a single equivalog model (TIGR01452) for the eukaryotic phosphoglycolate phosphatase, as well as four hypothetical equivalogs covering closely related sequences (TIGR01456 and TIGR01458 in eukaryotes, TIGR01457 in gram positive bacteria and TIGR01459 in gram negative bacteria). The Escherishia coli NagD gene and the Bacillus subtilus AraL gene are members of this subfamily but are not members of the any of the presently defined equivalogs within it. NagD is part of the NAG operon responsible for N-acetylglucosamine metabolism. The function of this gene is unknown. Genes from several organisms have been annotated as NagD, or NagD-like. However, without data on the presence of other members of this pathway, (such as in the case of Yersinia pestis) these assignments should not be given great weight. The AraL gene is similar: it is part of the L-arabinose operon, but the function is unknown. A gene from Halobacterium has been annotated as AraL, but no other Ara operon genes have been annotated. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant [Unknown function, Enzymes of unknown specificity]. Length = 236

>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 31  KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90
           +  L +   +  +G KP PG +  LE L   G  + V S+S RRA+  +  L  LG    
Sbjct: 71  ERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERV--LARLGLLD- 127

Query: 91  LFAGAITSGELTH 103
            F   +T+ ++  
Sbjct: 128 YFDVIVTADDVAR 140

Length = 221

>gnl|CDD|178251 PLN02645, PLN02645, phosphoglycolate phosphatase

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 32  AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFD-- 88
            ++ D  GV+  G K   G   TL+ML + G K+V ++N+S ++ +    K +SLG +  
Sbjct: 30  TFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT 89

Query: 89  -----PSLFAGA 95
                 S FA A
Sbjct: 90  EEEIFSSSFAAA 101

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	99.84
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	99.79
PLN02645	311	phosphoglycolate phosphatase	99.71
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	99.69
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.67
PRK10444	248	UMP phosphatase; Provisional	99.67
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	99.66
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	99.61
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	99.6
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	99.58
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	99.29
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	99.28
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	99.26
PHA03398	303	viral phosphatase superfamily protein; Provisional	99.17
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.1
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	99.08
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.06
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.03
PRK13288	214	pyrophosphatase PpaX; Provisional	99.02
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	98.99
PRK14988	224	GMP/IMP nucleotidase; Provisional	98.99
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	98.98
PLN02575	381	haloacid dehalogenase-like hydrolase	98.94
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	98.94
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	98.93
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	98.91
PRK11587	218	putative phosphatase; Provisional	98.9
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	98.89
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	98.89
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	98.88
PRK10513	270	sugar phosphate phosphatase; Provisional	98.88
PRK01158	230	phosphoglycolate phosphatase; Provisional	98.87
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.86
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	98.84
PRK06769	173	hypothetical protein; Validated	98.83
PHA02530	300	pseT polynucleotide kinase; Provisional	98.83
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	98.82
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	98.82
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	98.79
COG0546	220	Gph Predicted phosphatases [General function predi	98.77
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	98.77
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	98.76
PRK13225	273	phosphoglycolate phosphatase; Provisional	98.74
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	98.74
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	98.73
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	98.73
PRK13226	229	phosphoglycolate phosphatase; Provisional	98.72
PRK10976	266	putative hydrolase; Provisional	98.72
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.72
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	98.7
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	98.68
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	98.68
PLN02940	382	riboflavin kinase	98.68
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.67
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	98.66
PTZ00174	247	phosphomannomutase; Provisional	98.66
KOG1618	389	consensus Predicted phosphatase [General function	98.66
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	98.64
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	98.64
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	98.64
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.63
PRK13222	226	phosphoglycolate phosphatase; Provisional	98.63
PRK13223	272	phosphoglycolate phosphatase; Provisional	98.61
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	98.6
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	98.59
PLN02887	580	hydrolase family protein	98.59
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	98.59
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	98.58
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	98.55
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	98.55
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	98.54
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	98.54
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	98.51
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	98.46
PLN02954	224	phosphoserine phosphatase	98.41
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	98.39
PRK10563	221	6-phosphogluconate phosphatase; Provisional	98.33
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	98.32
COG0241	181	HisB Histidinol phosphatase and related phosphatas	98.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.3
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	98.28
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	98.24
PRK13582	205	thrH phosphoserine phosphatase; Provisional	98.23
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	98.23
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	98.22
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	98.21
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	98.2
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	98.18
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	98.16
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	98.15
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	98.15
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	98.14
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	98.13
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	98.12
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	98.1
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	98.09
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	98.08
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	98.08
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	98.08
PRK08238	479	hypothetical protein; Validated	98.08
PHA02597	197	30.2 hypothetical protein; Provisional	98.06
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	98.05
PRK09449	224	dUMP phosphatase; Provisional	98.05
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.04
PLN02423	245	phosphomannomutase	98.03
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	98.03
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	98.03
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	98.01
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	98.01
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	98.01
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	97.97
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	97.96
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	97.95
COG2503	274	Predicted secreted acid phosphatase [General funct	97.88
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	97.86
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	97.83
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	97.79
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	97.78
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	97.78
PRK11133	322	serB phosphoserine phosphatase; Provisional	97.77
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	97.76
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	97.74
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	97.69
COG4996	164	Predicted phosphatase [General function prediction	97.67
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	97.65
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	97.59
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	97.58
PLN02811	220	hydrolase	97.58
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	97.47
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	97.46
PLN03017	366	trehalose-phosphatase	97.4
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	97.38
PRK10748	238	flavin mononucleotide phosphatase; Provisional	97.28
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	97.26
PLN02151	354	trehalose-phosphatase	97.21
PLN02382	413	probable sucrose-phosphatase	97.2
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	97.19
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	97.16
PTZ00445	219	p36-lilke protein; Provisional	97.12
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	97.12
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	97.11
PLN02580	384	trehalose-phosphatase	97.05
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	97.03
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	97.02
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	96.99
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	96.95
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	96.79
PRK11590	211	hypothetical protein; Provisional	96.78
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	96.65
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	96.56
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	96.53
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	96.46
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	96.41
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	96.37
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	96.34
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	96.3
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	96.27
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	96.13
COG4359	220	Uncharacterized conserved protein [Function unknow	95.97
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	95.96
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	95.86
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	95.82
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	95.8
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	95.77
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	95.77
COG4087	152	Soluble P-type ATPase [General function prediction	95.54
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	95.51
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	95.39
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	95.11
PF04312	138	DUF460: Protein of unknown function (DUF460); Inte	94.96
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	94.9
KOG2116	738	consensus Protein involved in plasmid maintenance/	94.88
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	94.75
PRK09449	224	dUMP phosphatase; Provisional	94.54
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	94.38
PF06437	408	ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR0	94.28
PRK10671	834	copA copper exporting ATPase; Provisional	94.22
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	93.96
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	93.92
PF05761	448	5_nucleotid: 5' nucleotidase family; InterPro: IPR	93.88
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	93.71
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	93.62
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	93.55
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	93.51
KOG4549	144	consensus Magnesium-dependent phosphatase [General	93.33
TIGR02886	106	spore_II_AA anti-sigma F factor antagonist. The an	93.23
KOG3189	252	consensus Phosphomannomutase [Lipid transport and	93.23
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	93.2
PF06189	264	5-nucleotidase: 5'-nucleotidase; InterPro: IPR0103	93.15
PRK10748	238	flavin mononucleotide phosphatase; Provisional	92.92
COG4850	373	Uncharacterized conserved protein [Function unknow	92.87
PRK11590	211	hypothetical protein; Provisional	92.8
COG5083	580	SMP2 Uncharacterized protein involved in plasmid m	92.7
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	92.44
cd07041	109	STAS_RsbR_RsbS_like Sulphate Transporter and Anti-	91.94
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	91.92
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	91.91
KOG2961	190	consensus Predicted hydrolase (HAD superfamily) [G	91.12
COG1366	117	SpoIIAA Anti-anti-sigma regulatory factor (antagon	90.71
COG0826	347	Collagenase and related proteases [Posttranslation	90.68
PF01740	117	STAS: STAS domain; InterPro: IPR002645 The STAS (S	90.55
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	90.36
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	90.25
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	90.21
PRK05301	378	pyrroloquinoline quinone biosynthesis protein PqqE	89.9
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	89.89
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	89.86
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	89.74
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	89.38
TIGR02109	358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	89.37
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	88.98
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	88.79
PRK14010	673	potassium-transporting ATPase subunit B; Provision	88.52
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	88.24
PRK10076	213	pyruvate formate lyase II activase; Provisional	87.86
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	87.83
PRK01122	679	potassium-transporting ATPase subunit B; Provision	87.7
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	87.68
cd06844	100	STAS Sulphate Transporter and Anti-Sigma factor an	87.49
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	87.44
TIGR00377	108	ant_ant_sig anti-anti-sigma factor. This superfami	87.4
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	87.04
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	86.75
cd07043	99	STAS_anti-anti-sigma_factors Sulphate Transporter	86.7
COG4229	229	Predicted enolase-phosphatase [Energy production a	86.58
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	86.54
PRK15452	443	putative protease; Provisional	86.27
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	86.07
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	85.94
COG0731	296	Fe-S oxidoreductases [Energy production and conver	85.91
COG0602	212	NrdG Organic radical activating enzymes [Posttrans	85.49
COG2433	652	Uncharacterized conserved protein [Function unknow	85.4
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	85.16
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	84.57
cd06595	292	GH31_xylosidase_XylS-like This family represents a	84.4
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	84.31
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	83.82
cd06591	319	GH31_xylosidase_XylS XylS is a glycosyl hydrolase	83.81
TIGR02495	191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	83.78
PRK15122	903	magnesium-transporting ATPase; Provisional	83.69
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	82.53
PRK11660	568	putative transporter; Provisional	82.33
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	82.28
cd06598	317	GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide	81.53
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	81.51
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	81.48
TIGR02826	147	RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph	81.32
KOG2470	510	consensus Similar to IMP-GMP specific 5'-nucleotid	80.53
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	80.01

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=99.84  E-value=9.9e-21  Score=125.39  Aligned_cols=83  Identities=35%  Similarity=0.503  Sum_probs=73.6

Q ss_pred             EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHhccC
Q 033480           33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRLII  111 (118)
Q Consensus        33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~~  111 (118)
                      ++||+||||+++..++||+.|+|++|+++|++++++||++ ++.+++.++|+.+|++... +.|+||..++++||++..+
T Consensus         1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~   79 (101)
T PF13344_consen    1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-DEIITSGMAAAEYLKEHKG   79 (101)
T ss_dssp             EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G-GGEEEHHHHHHHHHHHHTT
T ss_pred             CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-CEEEChHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999999999998 6668899999999999885 9999999999999999888


Q ss_pred             CCccc
Q 033480          112 ASSVI  116 (118)
Q Consensus       112 ~~~v~  116 (118)
                      +++||
T Consensus        80 ~~~v~   84 (101)
T PF13344_consen   80 GKKVY   84 (101)
T ss_dssp             SSEEE
T ss_pred             CCEEE
Confidence            88876

...

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=99.79  E-value=5e-19  Score=135.12  Aligned_cols=91  Identities=29%  Similarity=0.483  Sum_probs=82.9

Q ss_pred             HHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHh-CCCCCcCCCceeehHH
Q 033480           23 HIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGE  100 (118)
Q Consensus        23 ~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~-~gi~~~~fd~iits~~  100 (118)
                      ++..  +|++++||+||||+++..++||+.|+|++|+++|++++++||++ ++...+.++|+. .+++.. ++.|+||+.
T Consensus         3 ~~~~--~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~-~~~i~TS~~   79 (269)
T COG0647           3 DVMD--KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT-PDDIVTSGD   79 (269)
T ss_pred             chhh--hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC-HHHeecHHH
Confidence            3455  89999999999999999999999999999999999999999998 556668999999 777777 599999999


Q ss_pred             HHHHHHHhccCCCccc
Q 033480          101 LTHQYLLRLIIASSVI  116 (118)
Q Consensus       101 v~~~~l~~~~~~~~v~  116 (118)
                      ++++|+++..++++||
T Consensus        80 at~~~l~~~~~~~kv~   95 (269)
T COG0647          80 ATADYLAKQKPGKKVY   95 (269)
T ss_pred             HHHHHHHhhCCCCEEE
Confidence            9999999999988887

>PLN02645 phosphoglycolate phosphatase

Probab=99.71  E-value=9e-17  Score=124.42  Aligned_cols=99  Identities=25%  Similarity=0.391  Sum_probs=88.0

Q ss_pred             ccchhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCC
Q 033480           15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFA   93 (118)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd   93 (118)
                      -++...+.+++.  +++.++||+||||+++..++||+.|+|++|+++|++++++||++ +....+.++|+.+|+... ++
T Consensus        15 ~~~~~~~~~~~~--~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~-~~   91 (311)
T PLN02645         15 LLTLENADELID--SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVT-EE   91 (311)
T ss_pred             cCCHHHHHHHHH--hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCC-hh
Confidence            567789999999  99999999999999999999999999999999999999999987 556777889999999988 69


Q ss_pred             ceeehHHHHHHHHHhccC--CCccc
Q 033480           94 GAITSGELTHQYLLRLII--ASSVI  116 (118)
Q Consensus        94 ~iits~~v~~~~l~~~~~--~~~v~  116 (118)
                      .|++|..+.+.|+++...  +++||
T Consensus        92 ~I~ts~~~~~~~l~~~~~~~~~~V~  116 (311)
T PLN02645         92 EIFSSSFAAAAYLKSINFPKDKKVY  116 (311)
T ss_pred             hEeehHHHHHHHHHhhccCCCCEEE
Confidence            999999999999998642  34454

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=99.69  E-value=1.9e-16  Score=119.13  Aligned_cols=86  Identities=22%  Similarity=0.372  Sum_probs=79.0

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHh
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR  108 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~  108 (118)
                      +++++||+||||+++.+++|++.++|++|+++|++++++||++ |+...+.++|+.+|++.. .|.|++++.+.++||++
T Consensus         1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~-~~~iit~~~~~~~~l~~   79 (249)
T TIGR01457         1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPAT-LETVFTASMATADYMND   79 (249)
T ss_pred             CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC-hhhEeeHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999976 778888999999999987 59999999999999999


Q ss_pred             ccCCCccc
Q 033480          109 LIIASSVI  116 (118)
Q Consensus       109 ~~~~~~v~  116 (118)
                      ..+.++|+
T Consensus        80 ~~~~~~v~   87 (249)
T TIGR01457        80 LKLEKTVY   87 (249)
T ss_pred             cCCCCEEE
Confidence            87766664

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.67  E-value=3.8e-16  Score=116.62  Aligned_cols=84  Identities=33%  Similarity=0.563  Sum_probs=76.2

Q ss_pred             HHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC-cCCCceeehHH
Q 033480           22 RHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITSGE  100 (118)
Q Consensus        22 ~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~-~~fd~iits~~  100 (118)
                      +++++  +++.++||+|||++++..++||+.|+|++|+++|++++|+||++++...+.+.|+.+|++. + |+.|+++++
T Consensus         2 ~~~~~--~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~-~~~Ii~s~~   78 (242)
T TIGR01459         2 FDLIN--DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADL-PEMIISSGE   78 (242)
T ss_pred             hhhhh--cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccc-cceEEccHH
Confidence            56888  9999999999999999999999999999999999999999998876655668899999997 7 799999999


Q ss_pred             HHHHHHHh
Q 033480          101 LTHQYLLR  108 (118)
Q Consensus       101 v~~~~l~~  108 (118)
                      +..+++.+
T Consensus        79 ~~~~~l~~   86 (242)
T TIGR01459        79 IAVQMILE   86 (242)
T ss_pred             HHHHHHHh
Confidence            98888764

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PRK10444 UMP phosphatase; Provisional

Probab=99.67  E-value=3.8e-16  Score=117.86  Aligned_cols=85  Identities=22%  Similarity=0.274  Sum_probs=76.5

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHh
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR  108 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~  108 (118)
                      ++.++||+||||+++..++||+.++|++|+++|++++++||++ +....+.++|+.+|++... +.++||+.++++||++
T Consensus         1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~L~~   79 (248)
T PRK10444          1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFLRR   79 (248)
T ss_pred             CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCH-hhEecHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999998 4567888999999998774 9999999999999998


Q ss_pred             ccCCCccc
Q 033480          109 LIIASSVI  116 (118)
Q Consensus       109 ~~~~~~v~  116 (118)
                      . ++++||
T Consensus        80 ~-~~~~v~   86 (248)
T PRK10444         80 Q-EGKKAY   86 (248)
T ss_pred             C-CCCEEE
Confidence            6 455554

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=99.66  E-value=7.2e-16  Score=117.46  Aligned_cols=87  Identities=25%  Similarity=0.334  Sum_probs=77.6

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      +++.++||+||||+++.+++||+.++|++|+++|++++++||++ ++...+..+|+.+|++... +.+++|+.++++||+
T Consensus         1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~l~   79 (279)
T TIGR01452         1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA-EQLFSSALCAARLLR   79 (279)
T ss_pred             CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEecHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999987 5566777899999998884 999999999999999


Q ss_pred             hc-cCCCccc
Q 033480          108 RL-IIASSVI  116 (118)
Q Consensus       108 ~~-~~~~~v~  116 (118)
                      +. .++++||
T Consensus        80 ~~~~~~~~v~   89 (279)
T TIGR01452        80 QPPDAPKAVY   89 (279)
T ss_pred             hhCcCCCEEE
Confidence            94 5566665

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=99.61  E-value=3.2e-15  Score=113.02  Aligned_cols=80  Identities=26%  Similarity=0.349  Sum_probs=73.0

Q ss_pred             CcEEEEeccCcccCCCc----cCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~----~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      ++.++||+||||+++..    ++|++.++|++|+++|++++++||++ +....+.++|+.+|++.. .+.|+||+.++++
T Consensus         1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~-~~~i~ts~~~~~~   79 (257)
T TIGR01458         1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDIS-EDEVFTPAPAARQ   79 (257)
T ss_pred             CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCC-HHHeEcHHHHHHH
Confidence            47899999999999887    99999999999999999999999998 555678899999999987 4999999999999


Q ss_pred             HHHhcc
Q 033480          105 YLLRLI  110 (118)
Q Consensus       105 ~l~~~~  110 (118)
                      ||++..
T Consensus        80 ~l~~~~   85 (257)
T TIGR01458        80 LLEEKQ   85 (257)
T ss_pred             HHHhcC
Confidence            999864

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=99.60  E-value=5.3e-15  Score=113.76  Aligned_cols=96  Identities=25%  Similarity=0.465  Sum_probs=87.6

Q ss_pred             hhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCC-CcCCCce
Q 033480           18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFD-PSLFAGA   95 (118)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~-~~~fd~i   95 (118)
                      .+..++++.  .++.|+||.|||||.+..++||+.|+++.|++.|..+.++||++ ++++++.++.+.+|+. ... +.|
T Consensus        12 ~~~~~e~l~--~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e-~~i   88 (306)
T KOG2882|consen   12 SEEARELLD--SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKE-ENI   88 (306)
T ss_pred             HHHHHHHHh--hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCc-ccc
Confidence            367889999  99999999999999999999999999999999999999999998 6678888999999998 664 899


Q ss_pred             eehHHHHHHHHHhcc-CCCccc
Q 033480           96 ITSGELTHQYLLRLI-IASSVI  116 (118)
Q Consensus        96 its~~v~~~~l~~~~-~~~~v~  116 (118)
                      +++.-+.+.||++.. .+++||
T Consensus        89 ~ssa~~~a~ylk~~~~~~k~Vy  110 (306)
T KOG2882|consen   89 FSSAYAIADYLKKRKPFGKKVY  110 (306)
T ss_pred             cChHHHHHHHHHHhCcCCCeEE
Confidence            999999999998887 667776

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=99.58  E-value=7.7e-15  Score=109.57  Aligned_cols=83  Identities=39%  Similarity=0.517  Sum_probs=76.0

Q ss_pred             EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHh-CCCCCcCCCceeehHHHHHHHHHhcc
Q 033480           33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~-~gi~~~~fd~iits~~v~~~~l~~~~  110 (118)
                      ++||+||||+++..++|++.++|+.++++|+++.++||++ ++...+.++|.. +|++.. ++.+++|+.++++|+++.+
T Consensus         1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~-~~~iits~~~~~~~l~~~~   79 (236)
T TIGR01460         1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVS-PDQIITSGSVTKDLLRQRF   79 (236)
T ss_pred             CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCC-HHHeeeHHHHHHHHHHHhC
Confidence            5899999999999999999999999999999999999998 777888899988 899887 5999999999999999877


Q ss_pred             CCCccc
Q 033480          111 IASSVI  116 (118)
Q Consensus       111 ~~~~v~  116 (118)
                      ++++||
T Consensus        80 ~~~~v~   85 (236)
T TIGR01460        80 EGEKVY   85 (236)
T ss_pred             CCCEEE
Confidence            777665

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01684 viral_ppase viral phosphatase

Probab=99.29  E-value=4e-12  Score=98.20  Aligned_cols=74  Identities=20%  Similarity=0.331  Sum_probs=64.9

Q ss_pred             CCcEEEEeccCcccCCCcc----CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~----~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      ..+.++||+||||+++.+.    -||+.|+|++|+++|++++|+||+++..  +...|+.+|+..+ |+.|++++++.+.
T Consensus       125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~--v~~~L~~lGLd~Y-FdvIIs~Gdv~~~  201 (301)
T TIGR01684       125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH--VVESMRKVKLDRY-FDIIISGGHKAEE  201 (301)
T ss_pred             cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHcCCCcc-cCEEEECCccccC
Confidence            6889999999999998764    4999999999999999999999987643  5689999999998 7999999998554


Q ss_pred             H
Q 033480          105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      +
T Consensus       202 k  202 (301)
T TIGR01684       202 Y  202 (301)
T ss_pred             C
Confidence            3

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=99.28  E-value=8.8e-12  Score=97.03  Aligned_cols=77  Identities=25%  Similarity=0.333  Sum_probs=67.4

Q ss_pred             EEEEeccCcccCCCccCccHHHHHHHHHHC----CCcEEEEeCCC-CChHHHHHHH-HhCCCCCcCCCceeehHHHHHHH
Q 033480           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSS-RRASTTIDKL-KSLGFDPSLFAGAITSGELTHQY  105 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~----Gi~v~I~TN~~-r~~~~~~~~L-~~~gi~~~~fd~iits~~v~~~~  105 (118)
                      +++||+||||+++..++||+.|+++.|+.+    |+++.++||++ ++...+.+.| +.+|++... +.++++..++..|
T Consensus         2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~-~~i~~s~~~~~~l   80 (321)
T TIGR01456         2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSP-LQVIQSHSPYKSL   80 (321)
T ss_pred             EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCH-HHHHhhhHHHHHH
Confidence            689999999999999999999999999998    99999999987 5556667777 889998874 8999999888888


Q ss_pred             HHhc
Q 033480          106 LLRL  109 (118)
Q Consensus       106 l~~~  109 (118)
                      +++.
T Consensus        81 l~~~   84 (321)
T TIGR01456        81 VNKY   84 (321)
T ss_pred             HHHc
Confidence            7543

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=99.26  E-value=2.4e-11  Score=90.07  Aligned_cols=84  Identities=31%  Similarity=0.404  Sum_probs=77.2

Q ss_pred             cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l  106 (118)
                      +.++++++|+-|||+.+..++||+.|+++.|+.++.++-++||.+ .+...+.++|+++|++... +.|+||..++++|+
T Consensus         5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~e-eei~tsl~aa~~~~   83 (262)
T KOG3040|consen    5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSE-EEIFTSLPAARQYL   83 (262)
T ss_pred             cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccH-HHhcCccHHHHHHH
Confidence            478999999999999999999999999999999999999999987 4557788999999999985 89999999999999


Q ss_pred             HhccCC
Q 033480          107 LRLIIA  112 (118)
Q Consensus       107 ~~~~~~  112 (118)
                      +++...
T Consensus        84 ~~~~lr   89 (262)
T KOG3040|consen   84 EENQLR   89 (262)
T ss_pred             HhcCCC
Confidence            998654

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=99.17  E-value=4.2e-11  Score=92.64  Aligned_cols=74  Identities=22%  Similarity=0.288  Sum_probs=64.9

Q ss_pred             CCcEEEEeccCcccCCCcc----CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~----~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      ..+.++||+||||......    .|++.++|++|+++|++++|+||+++.  .+...|+.+|+..+ |+.++++++...+
T Consensus       127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re--~v~~~Le~lgL~~y-FDvII~~g~i~~k  203 (303)
T PHA03398        127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNRE--HVVHSLKETKLEGY-FDIIICGGRKAGE  203 (303)
T ss_pred             eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChH--HHHHHHHHcCCCcc-ccEEEECCCcccc
Confidence            5789999999999988664    599999999999999999999998664  35789999999998 7999999988776


Q ss_pred             H
Q 033480          105 Y  105 (118)
Q Consensus       105 ~  105 (118)
                      .
T Consensus       204 ~  204 (303)
T PHA03398        204 Y  204 (303)
T ss_pred             c
Confidence            5

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.10  E-value=8.6e-11  Score=80.37  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=53.3

Q ss_pred             cEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC-------CCCc
Q 033480           31 KAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-------FDPS   90 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g-------i~~~   90 (118)
                      |.+++|+||||+.+.             .++||+.++|++|+++|++++++||++.. ......++.++       +..+
T Consensus         1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~-~~~~~~l~~~~~~~~i~~l~~~   79 (128)
T TIGR01681         1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDP-HVAYELLKIFEDFGIIFPLAEY   79 (128)
T ss_pred             CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCH-HHHHHHHHhccccccchhhHhh
Confidence            578999999999872             15899999999999999999999998322 23446667777       7777


Q ss_pred             CCCceeehH
Q 033480           91 LFAGAITSG   99 (118)
Q Consensus        91 ~fd~iits~   99 (118)
                       |+.+++++
T Consensus        80 -f~~~~~~~   87 (128)
T TIGR01681        80 -FDPLTIGY   87 (128)
T ss_pred             -hhhhhhcC
Confidence             68888773

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=99.08  E-value=4.2e-10  Score=80.28  Aligned_cols=70  Identities=21%  Similarity=0.198  Sum_probs=53.9

Q ss_pred             hcCCcEEEEeccCcccCCCc-------------cCccHHHHHHHHHHCCCcEEEEeCCCCCh----------HHHHHHHH
Q 033480           27 TRRFKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRA----------STTIDKLK   83 (118)
Q Consensus        27 ~~~~~~~~~D~DGtL~~~~~-------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~----------~~~~~~L~   83 (118)
                      +|..+.++||+||||+....             ++||+.++|++|+++|++++|+||++...          ..+...|+
T Consensus        10 ~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~   89 (166)
T TIGR01664        10 KPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLE   89 (166)
T ss_pred             CCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHH
Confidence            35789999999999987432             46999999999999999999999986420          13457789


Q ss_pred             hCCCCCcCCCceeehH
Q 033480           84 SLGFDPSLFAGAITSG   99 (118)
Q Consensus        84 ~~gi~~~~fd~iits~   99 (118)
                      .+|+..   +.+++++
T Consensus        90 ~~gl~~---~~ii~~~  102 (166)
T TIGR01664        90 KLKVPI---QVLAATH  102 (166)
T ss_pred             HcCCCE---EEEEecC
Confidence            999853   3455544

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.06  E-value=4.8e-10  Score=73.89  Aligned_cols=68  Identities=35%  Similarity=0.526  Sum_probs=57.1

Q ss_pred             EEEEeccCcccCCC---------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480           32 AWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        32 ~~~~D~DGtL~~~~---------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~  102 (118)
                      .++||+||||+...         .++|++.++|+.|+++|++++++||+.+  ..+...++.+|+..+ |+.++++....
T Consensus         1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~--~~~~~~~~~~~~~~~-~~~i~~~~~~~   77 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSR--REVLELLEELGLDDY-FDPVITSNGAA   77 (139)
T ss_pred             CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchH--HHHHHHHHHcCCchh-hhheeccchhh
Confidence            37999999999877         7799999999999999999999999764  456788888998766 57888766553

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.03  E-value=7.2e-10  Score=75.19  Aligned_cols=58  Identities=31%  Similarity=0.458  Sum_probs=48.6

Q ss_pred             cEEEEeccCcccCC---------CccCccHHHHHHHHHHCCCcEEEEeCCCCC------hHHHHHHHHhCCCC
Q 033480           31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSRR------ASTTIDKLKSLGFD   88 (118)
Q Consensus        31 ~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~------~~~~~~~L~~~gi~   88 (118)
                      |+++||+||||+++         ..++||+.++|++|+++|++++|+||++..      ...+...++.+++.
T Consensus         1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~   73 (132)
T TIGR01662         1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP   73 (132)
T ss_pred             CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence            57999999999963         367999999999999999999999998611      23466788999986

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=99.02  E-value=7.7e-10  Score=80.59  Aligned_cols=53  Identities=28%  Similarity=0.362  Sum_probs=45.7

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|++|+++|++++|+||+++  ..+...|+.+|+..+ |+.+++++++
T Consensus        82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~--~~~~~~l~~~gl~~~-f~~i~~~~~~  134 (214)
T PRK13288         82 TEYETVYETLKTLKKQGYKLGIVTTKMR--DTVEMGLKLTGLDEF-FDVVITLDDV  134 (214)
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCChhc-eeEEEecCcC
Confidence            4789999999999999999999999864  446688999999998 7999987653

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=98.99  E-value=1e-09  Score=79.17  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             CcEEEEeccCcccCCC---------------------------ccCccHHHHHHHHHHCCCcEEEEeCC-CCChHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNS-SRRASTTIDK   81 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~---------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~-~r~~~~~~~~   81 (118)
                      .+.++||+|+|+|.+.                           +++||+.++|+.|+++|++++|+||+ ++.  .+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~--~~~~~   79 (174)
T TIGR01685         2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE--WAYEI   79 (174)
T ss_pred             CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH--HHHHH
Confidence            4789999999998751                           46899999999999999999999997 443  35678


Q ss_pred             HHhCCCC---------CcCCCceeehHHH
Q 033480           82 LKSLGFD---------PSLFAGAITSGEL  101 (118)
Q Consensus        82 L~~~gi~---------~~~fd~iits~~v  101 (118)
                      |+.+++.         .+ |+.+++++++
T Consensus        80 L~~~~l~~~~~~~~~~~~-Fd~iv~~~~~  107 (174)
T TIGR01685        80 LGTFEITYAGKTVPMHSL-FDDRIEIYKP  107 (174)
T ss_pred             HHhCCcCCCCCcccHHHh-ceeeeeccCC
Confidence            8999998         88 7999988764

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=98.99  E-value=8.3e-10  Score=81.79  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=45.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++  ..+...++.+|+..+ ||.+++++++
T Consensus        93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~--~~~~~~l~~~~l~~~-fd~iv~s~~~  145 (224)
T PRK14988         93 VLREDTVPFLEALKASGKRRILLTNAHP--HNLAVKLEHTGLDAH-LDLLLSTHTF  145 (224)
T ss_pred             CcCCCHHHHHHHHHhCCCeEEEEeCcCH--HHHHHHHHHCCcHHH-CCEEEEeeeC
Confidence            4689999999999999999999999865  345677899999988 7999988765

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=98.98  E-value=1.3e-09  Score=80.86  Aligned_cols=56  Identities=32%  Similarity=0.494  Sum_probs=48.8

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      .++||+.++|+.|+++|++++++||+++.  .+...|+.+|+..+ |+.+++++++.+.
T Consensus        86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~--~~~~~L~~~gl~~~-f~~~v~~~dv~~~  141 (221)
T COG0637          86 KPIPGVVELLEQLKARGIPLAVASSSPRR--AAERVLARLGLLDY-FDVIVTADDVARG  141 (221)
T ss_pred             CCCccHHHHHHHHHhcCCcEEEecCChHH--HHHHHHHHccChhh-cchhccHHHHhcC
Confidence            57899999999999999999999998653  36688899999999 7999999987654

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=98.94  E-value=1.7e-09  Score=86.39  Aligned_cols=52  Identities=17%  Similarity=0.277  Sum_probs=46.1

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++|+||+++  ..+...|+.+|+..+ ||.+++++++
T Consensus       217 l~pGa~ElL~~Lk~~GiklaIaSn~~~--~~~~~~L~~lgL~~y-Fd~Iv~sddv  268 (381)
T PLN02575        217 LRTGSQEFVNVLMNYKIPMALVSTRPR--KTLENAIGSIGIRGF-FSVIVAAEDV  268 (381)
T ss_pred             cCcCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCHHH-ceEEEecCcC
Confidence            478999999999999999999999865  456788999999999 7999999875

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=98.94  E-value=3.5e-09  Score=75.59  Aligned_cols=43  Identities=30%  Similarity=0.390  Sum_probs=38.1

Q ss_pred             cEEEEeccCcccCC---------CccCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480           31 KAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSR   73 (118)
Q Consensus        31 ~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r   73 (118)
                      +.+|||.||||..+         ..++||+.++|++|+++|++++|+||++.
T Consensus         2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~   53 (176)
T TIGR00213         2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG   53 (176)
T ss_pred             CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            68999999999843         24689999999999999999999999874

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=98.93  E-value=4.1e-09  Score=73.28  Aligned_cols=58  Identities=31%  Similarity=0.517  Sum_probs=48.0

Q ss_pred             cEEEEeccCcccCCC-----------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-------------hHHHHHHHHhCC
Q 033480           31 KAWLLDQFGVLHDGK-----------KPYPGAISTLEMLATTGAKMVVISNSSRR-------------ASTTIDKLKSLG   86 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~-----------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-------------~~~~~~~L~~~g   86 (118)
                      ++++||+||||..+.           .++||+.++|+.|+++|++++|+||+++.             ...+...++.+|
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG   80 (147)
T ss_pred             CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence            478999999998765           36999999999999999999999998641             123556778899


Q ss_pred             CC
Q 033480           87 FD   88 (118)
Q Consensus        87 i~   88 (118)
                      +.
T Consensus        81 l~   82 (147)
T TIGR01656        81 VA   82 (147)
T ss_pred             Cc
Confidence            86

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=98.91  E-value=7.9e-09  Score=73.87  Aligned_cols=67  Identities=28%  Similarity=0.357  Sum_probs=50.7

Q ss_pred             CCcEEEEeccCcccCCC----------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-------------hHHHHHHHHhC
Q 033480           29 RFKAWLLDQFGVLHDGK----------KPYPGAISTLEMLATTGAKMVVISNSSRR-------------ASTTIDKLKSL   85 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~----------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-------------~~~~~~~L~~~   85 (118)
                      .+|.++||.||||..+.          .++||+.++|++|+++|++++|+||+++.             ...+...++.+
T Consensus         2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (181)
T PRK08942          2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADR   81 (181)
T ss_pred             CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc
Confidence            57999999999996543          46899999999999999999999998631             11233456677


Q ss_pred             CCCCcCCCceeeh
Q 033480           86 GFDPSLFAGAITS   98 (118)
Q Consensus        86 gi~~~~fd~iits   98 (118)
                      |+.   |+.++++
T Consensus        82 g~~---f~~i~~~   91 (181)
T PRK08942         82 GGR---LDGIYYC   91 (181)
T ss_pred             CCc---cceEEEC
Confidence            763   5666653

>PRK11587 putative phosphatase; Provisional

Probab=98.90  E-value=8.1e-09  Score=75.64  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|+.|+++|++++|+||+++.  .....++..++. + |+.+++++++
T Consensus        82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~--~~~~~l~~~~l~-~-~~~i~~~~~~  134 (218)
T PRK11587         82 ITALPGAIALLNHLNKLGIPWAIVTSGSVP--VASARHKAAGLP-A-PEVFVTAERV  134 (218)
T ss_pred             ceeCcCHHHHHHHHHHcCCcEEEEcCCCch--HHHHHHHhcCCC-C-ccEEEEHHHh
Confidence            357899999999999999999999998653  345677888884 4 5788887664

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=98.89  E-value=3.6e-09  Score=80.33  Aligned_cols=53  Identities=15%  Similarity=0.291  Sum_probs=46.1

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|++|+++|++++|+||+++  ..+...++.+|+..+ |+.+++++++
T Consensus       109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~--~~~~~~l~~~gl~~~-Fd~ii~~~d~  161 (260)
T PLN03243        109 RLRPGSREFVQALKKHEIPIAVASTRPR--RYLERAIEAVGMEGF-FSVVLAAEDV  161 (260)
T ss_pred             ccCCCHHHHHHHHHHCCCEEEEEeCcCH--HHHHHHHHHcCCHhh-CcEEEecccC
Confidence            3689999999999999999999999865  346688999999998 7999999875

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=98.89  E-value=6.4e-09  Score=73.97  Aligned_cols=63  Identities=24%  Similarity=0.368  Sum_probs=50.0

Q ss_pred             cEEEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCC-------------ChHHHHHHHHhC
Q 033480           31 KAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR-------------RASTTIDKLKSL   85 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-------------~~~~~~~~L~~~   85 (118)
                      +.+|||.||||....            .++||+.++|++|+++|++++|+||++.             ....+...++.+
T Consensus         2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~   81 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ   81 (161)
T ss_pred             CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence            689999999998732            4689999999999999999999999741             122355678999


Q ss_pred             CCCCcCCCcee
Q 033480           86 GFDPSLFAGAI   96 (118)
Q Consensus        86 gi~~~~fd~ii   96 (118)
                      |+.   |+.++
T Consensus        82 gl~---fd~ii   89 (161)
T TIGR01261        82 GII---FDDVL   89 (161)
T ss_pred             CCc---eeEEE
Confidence            996   46564

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=98.88  E-value=6.9e-09  Score=72.91  Aligned_cols=76  Identities=24%  Similarity=0.333  Sum_probs=57.1

Q ss_pred             CcEEEEeccCcccCCCc-------------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           30 FKAWLLDQFGVLHDGKK-------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      ++.+|||+||||+.+..             ..++  .+|++|+++|++++|+||+++.  .+...++.+|+..+ |+...
T Consensus         1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~--~~~~~l~~~gi~~~-~~~~~   75 (154)
T TIGR01670         1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAK--LVEDRCKTLGITHL-YQGQS   75 (154)
T ss_pred             CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCH--HHHHHHHHcCCCEE-Eeccc
Confidence            47899999999998422             1122  3799999999999999998654  45688899999887 67766


Q ss_pred             ehHHHHHHHHHhcc
Q 033480           97 TSGELTHQYLLRLI  110 (118)
Q Consensus        97 ts~~v~~~~l~~~~  110 (118)
                      ...+...+++++..
T Consensus        76 ~k~~~~~~~~~~~~   89 (154)
T TIGR01670        76 NKLIAFSDILEKLA   89 (154)
T ss_pred             chHHHHHHHHHHcC
Confidence            66666666666543

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=98.88  E-value=6.3e-09  Score=78.11  Aligned_cols=60  Identities=17%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      |.+|.+++|+||||++... +.|...++|++|+++|++++++|+++.  ..+...++.+++..
T Consensus         1 m~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~   61 (270)
T PRK10513          1 MAIKLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPY--AGVHRYLKELHMEQ   61 (270)
T ss_pred             CceEEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCCh--HHHHHHHHHhCCCC
Confidence            5689999999999998764 668999999999999999999998653  34567777788753

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=98.87  E-value=7.2e-09  Score=75.92  Aligned_cols=60  Identities=15%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      |.+|.+++|+||||+++.. +.|.+.++|++|+++|++++++|+++.  ..+...++.++++.
T Consensus         1 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~   61 (230)
T PRK01158          1 MKIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVL--CFARAAAKLIGTSG   61 (230)
T ss_pred             CceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCCC
Confidence            4689999999999998766 568999999999999999999998653  34556667788753

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.86  E-value=5.7e-09  Score=79.09  Aligned_cols=61  Identities=20%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             cCCcEEEEeccCcccC-CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           28 RRFKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~-~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      |.++.+++|+||||++ +....+++.++|++|+++|++++++||++.  ..+...++.+|+..+
T Consensus         2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~--~~~~~~~~~l~l~~~   63 (273)
T PRK00192          2 MMKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTA--AEVEVLRKELGLEDP   63 (273)
T ss_pred             CcceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCCCC
Confidence            5789999999999998 456789999999999999999999998754  456778888888644

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=98.84  E-value=1.2e-08  Score=76.43  Aligned_cols=59  Identities=20%  Similarity=0.319  Sum_probs=49.5

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      |.+|.+++|+||||+++.. +.|...++|++|+++|+.++++|+++.  ..+...++.+++.
T Consensus         1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~--~~~~~~~~~l~~~   60 (272)
T PRK10530          1 MTYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHH--VAIHPFYQALALD   60 (272)
T ss_pred             CCccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCCh--HHHHHHHHhcCCC
Confidence            5689999999999998765 679999999999999999999998653  3456677777765

>PRK06769 hypothetical protein; Validated

Probab=98.83  E-value=1.2e-08  Score=72.89  Aligned_cols=62  Identities=21%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             CCcEEEEeccCcccCC--------CccCccHHHHHHHHHHCCCcEEEEeCCCCC------hHHHHHHHHhCCCCCc
Q 033480           29 RFKAWLLDQFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSSRR------ASTTIDKLKSLGFDPS   90 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~--------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~------~~~~~~~L~~~gi~~~   90 (118)
                      +|+++++|.||||...        ..++||+.++|++|+++|++++|+||++..      .......++.+|+..+
T Consensus         3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~   78 (173)
T PRK06769          3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDI   78 (173)
T ss_pred             CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEE
Confidence            7999999999999433        246899999999999999999999998631      0124455788887654

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=98.83  E-value=6.7e-09  Score=79.25  Aligned_cols=81  Identities=20%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             CcEEEEeccCcccC-------------CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC-cCCCce
Q 033480           30 FKAWLLDQFGVLHD-------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGA   95 (118)
Q Consensus        30 ~~~~~~D~DGtL~~-------------~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~-~~fd~i   95 (118)
                      .+.+++|+|||+..             +..++||+.++|++|+++|++++++||++...  ....++.+++.. + |+.+
T Consensus       158 ~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~--~~~~l~~l~~~~~~-f~~i  234 (300)
T PHA02530        158 PKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC--EEDTVEWLRQTDIW-FDDL  234 (300)
T ss_pred             CCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh--HHHHHHHHHHcCCc-hhhh
Confidence            57899999999986             44689999999999999999999999987533  456777788875 6 7888


Q ss_pred             eehHHHHHHHHHhccCCCc
Q 033480           96 ITSGELTHQYLLRLIIASS  114 (118)
Q Consensus        96 its~~v~~~~l~~~~~~~~  114 (118)
                      ++... ...||+....+++
T Consensus       235 ~~~~~-~~~~~~~~~~~kp  252 (300)
T PHA02530        235 IGRPP-DMHFQREQGDKRP  252 (300)
T ss_pred             hCCcc-hhhhcccCCCCCC
Confidence            88773 5556766554443

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=98.82  E-value=1.2e-08  Score=74.82  Aligned_cols=54  Identities=17%  Similarity=0.207  Sum_probs=46.3

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ...++||+.++|+.|+++|++++|+||+++  ..+...++.+|+..+ |+.++++++
T Consensus        90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  143 (222)
T PRK10826         90 TRPLLPGVREALALCKAQGLKIGLASASPL--HMLEAVLTMFDLRDY-FDALASAEK  143 (222)
T ss_pred             CCCCCCCHHHHHHHHHHCCCeEEEEeCCcH--HHHHHHHHhCcchhc-ccEEEEccc
Confidence            356899999999999999999999999865  346678899999998 799998765

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=98.82  E-value=1.8e-08  Score=69.31  Aligned_cols=65  Identities=17%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             cEEEEeccCcccCCC-------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-hH------------HHHHHHHhCCCCCc
Q 033480           31 KAWLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNSSRR-AS------------TTIDKLKSLGFDPS   90 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~-------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~------------~~~~~L~~~gi~~~   90 (118)
                      |.+++|+||||..+.       .+.+++.+.|++|+++|+.++++|+++.. ..            ...+.|.+.+++  
T Consensus         2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip--   79 (126)
T TIGR01689         2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP--   79 (126)
T ss_pred             CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC--
Confidence            689999999998743       25679999999999999999999988632 22            456777888876  


Q ss_pred             CCCceeeh
Q 033480           91 LFAGAITS   98 (118)
Q Consensus        91 ~fd~iits   98 (118)
                       ||.++..
T Consensus        80 -Yd~l~~~   86 (126)
T TIGR01689        80 -YDEIYVG   86 (126)
T ss_pred             -CceEEeC
Confidence             5666643

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=98.79  E-value=1.7e-08  Score=76.10  Aligned_cols=83  Identities=10%  Similarity=0.069  Sum_probs=60.4

Q ss_pred             ccchhhHHHHHhhcCCc--EEEEeccCcccCCCc-----------------------------------cCccHHHHHHH
Q 033480           15 FQTLNGLRHIAETRRFK--AWLLDQFGVLHDGKK-----------------------------------PYPGAISTLEM   57 (118)
Q Consensus        15 ~~~~~~~~~~~~~~~~~--~~~~D~DGtL~~~~~-----------------------------------~~pga~e~L~~   57 (118)
                      ..+.+.+++=++  +.+  +++||+||||+....                                   +.+++.|+|++
T Consensus        48 ~~~~~~~~~~~~--~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~  125 (237)
T TIGR01672        48 WISVAQIENSLE--GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDM  125 (237)
T ss_pred             EEEHHHHHHhcC--CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHH
Confidence            344556665555  443  899999999976532                                   12239999999


Q ss_pred             HHHCCCcEEEEeCCCC--ChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           58 LATTGAKMVVISNSSR--RASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        58 Lk~~Gi~v~I~TN~~r--~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      |+++|++++++||+..  ....+...++.+|++.+ |+.+++++.
T Consensus       126 l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~-f~~i~~~d~  169 (237)
T TIGR01672       126 HQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM-NPVIFAGDK  169 (237)
T ss_pred             HHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh-eeEEECCCC
Confidence            9999999999999853  22345566678999988 688888665

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=98.77  E-value=3.2e-08  Score=73.00  Aligned_cols=49  Identities=24%  Similarity=0.385  Sum_probs=43.7

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      .++||+.++|++|+++|++++|+||+++  ..+...|+++|+..+ |+.+++
T Consensus        89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~--~~~~~~l~~~gl~~~-F~~i~g  137 (220)
T COG0546          89 RLFPGVKELLAALKSAGYKLGIVTNKPE--RELDILLKALGLADY-FDVIVG  137 (220)
T ss_pred             ccCCCHHHHHHHHHhCCCeEEEEeCCcH--HHHHHHHHHhCCccc-cceEEc
Confidence            3689999999999999999999999865  346788999999999 799998

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=98.77  E-value=5.9e-08  Score=69.20  Aligned_cols=82  Identities=20%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             hcCCcEEEEeccCcccCC--CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           27 TRRFKAWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        27 ~~~~~~~~~D~DGtL~~~--~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      ..+++.+++|+|||++..  ..++||+.++|++|+++|++++++||++. ...+...++.+|+..+ +...-...+....
T Consensus        22 ~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~-~~~~~~~~~~~gl~~~-~~~~KP~p~~~~~   99 (170)
T TIGR01668        22 KVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAG-EQRAKAVEKALGIPVL-PHAVKPPGCAFRR   99 (170)
T ss_pred             HCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCch-HHHHHHHHHHcCCEEE-cCCCCCChHHHHH
Confidence            358999999999999853  35899999999999999999999999862 1233455577887644 2333444455556


Q ss_pred             HHHhcc
Q 033480          105 YLLRLI  110 (118)
Q Consensus       105 ~l~~~~  110 (118)
                      .+++..
T Consensus       100 ~l~~~~  105 (170)
T TIGR01668       100 AHPEMG  105 (170)
T ss_pred             HHHHcC
Confidence            666654

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=98.76  E-value=2.3e-08  Score=74.38  Aligned_cols=55  Identities=25%  Similarity=0.234  Sum_probs=47.4

Q ss_pred             EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +++|+||||+++....|++.++|++|+++|++++++|++++  ..+...++.+|+..
T Consensus         2 i~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~--~~~~~~~~~lg~~~   56 (225)
T TIGR02461         2 IFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTR--AEQEYYREELGVEP   56 (225)
T ss_pred             EEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCCC
Confidence            78999999999777889999999999999999999997643  45677888898753

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=98.74  E-value=2.2e-08  Score=76.59  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=43.9

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      +++||+.++|++|+++|++++|+||+++  ..+...|+.+|+..+ |+.++++.+
T Consensus       142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~--~~~~~~L~~~gl~~~-F~~vi~~~~  193 (273)
T PRK13225        142 QLFPGVADLLAQLRSRSLCLGILSSNSR--QNIEAFLQRQGLRSL-FSVVQAGTP  193 (273)
T ss_pred             CcCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCChhh-eEEEEecCC
Confidence            4579999999999999999999999865  446688899999988 788877654

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=98.74  E-value=2.3e-08  Score=69.75  Aligned_cols=70  Identities=20%  Similarity=0.075  Sum_probs=55.5

Q ss_pred             CcEEEEeccCcccCCC---------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL   82 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~---------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L   82 (118)
                      ...+++|+||||.+..                           .+.||+.|+|++|+ ++++++|+||+++.  .+...+
T Consensus         2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~--~~~~il   78 (148)
T smart00577        2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRM--YADPVL   78 (148)
T ss_pred             CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHH--HHHHHH
Confidence            4578999999998741                           24899999999998 57999999998654  355778


Q ss_pred             HhCCCCCcCCCceeehHHHH
Q 033480           83 KSLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        83 ~~~gi~~~~fd~iits~~v~  102 (118)
                      +.+++..++|+.++++++..
T Consensus        79 ~~l~~~~~~f~~i~~~~d~~   98 (148)
T smart00577       79 DLLDPKKYFGYRRLFRDECV   98 (148)
T ss_pred             HHhCcCCCEeeeEEECcccc
Confidence            88988654368899988764

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=98.73  E-value=3.6e-08  Score=74.37  Aligned_cols=58  Identities=17%  Similarity=0.108  Sum_probs=48.9

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +|.+++|+||||++... +.+.+.++|++|+++|++++++|+++  ...+...++.++++.
T Consensus         2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~~   60 (272)
T PRK15126          2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRH--VLEMQHILGALSLDA   60 (272)
T ss_pred             ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHcCCCC
Confidence            78999999999998654 67999999999999999999999864  345667788888763

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=98.73  E-value=3.2e-08  Score=72.24  Aligned_cols=57  Identities=14%  Similarity=0.159  Sum_probs=47.4

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +|.+++|+||||+++.. +.|.+.++|++|+++|++++++|+++.  ..+...++.+++.
T Consensus         1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~--~~~~~~~~~l~~~   58 (215)
T TIGR01487         1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTV--PFARALAVLIGTS   58 (215)
T ss_pred             CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcc--hhHHHHHHHhCCC
Confidence            47899999999998765 669999999999999999999998764  3355666777765

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=98.72  E-value=3.1e-08  Score=73.28  Aligned_cols=53  Identities=21%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++  ......++.+|+..+ |+.+++++++
T Consensus        95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~--~~~~~~l~~~~l~~~-f~~i~~~~~~  147 (229)
T PRK13226         95 QLFDGVEGMLQRLECAGCVWGIVTNKPE--YLARLILPQLGWEQR-CAVLIGGDTL  147 (229)
T ss_pred             eeCCCHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCchhc-ccEEEecCcC
Confidence            4689999999999999999999999864  335578899999988 7888887653

>PRK10976 putative hydrolase; Provisional

Probab=98.72  E-value=4e-08  Score=73.69  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +|.+++|+||||++... +-|.+.++|++|+++|++++++|+++.  ..+...++.++++.
T Consensus         2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~--~~~~~~~~~l~~~~   60 (266)
T PRK10976          2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHH--VDVGQIRDNLEIKS   60 (266)
T ss_pred             ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCh--HHHHHHHHhcCCCC
Confidence            68999999999998765 678999999999999999999998653  34566778888753

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.72  E-value=4.1e-08  Score=74.35  Aligned_cols=59  Identities=19%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             cCCcEEEEeccCcccCCCccC-ccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~-pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +.++.+++|+||||+++...+ +.+.++|++|+++|++++++|+++  ...+...++.+|++
T Consensus         5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~--~~~i~~~~~~l~~~   64 (271)
T PRK03669          5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKT--AAEMLPLQQTLGLQ   64 (271)
T ss_pred             CCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCC--HHHHHHHHHHhCCC
Confidence            378999999999999876654 789999999999999999999865  34566778888874

>TIGR01686 FkbH FkbH-like domain

Probab=98.70  E-value=2.6e-08  Score=77.44  Aligned_cols=67  Identities=13%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             CCcEEEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh----CCCCCcCC
Q 033480           29 RFKAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS----LGFDPSLF   92 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~----~gi~~~~f   92 (118)
                      .+|.+++|+|+|||.+.            .++||+.++|+.|+++|++++|+||+++  ..+...|+.    +++..+ |
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~--~~a~~~l~~~~~~~~~~~~-f   78 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDE--DDAKKVFERRKDFILQAED-F   78 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCH--HHHHHHHHhCccccCcHHH-e
Confidence            46899999999999874            3578999999999999999999999865  446788888    888887 6


Q ss_pred             Cceeeh
Q 033480           93 AGAITS   98 (118)
Q Consensus        93 d~iits   98 (118)
                      +.+..+
T Consensus        79 ~~~~~~   84 (320)
T TIGR01686        79 DARSIN   84 (320)
T ss_pred             eEEEEe
Confidence            776664

The C-terminal portion of this domain is unique to this family (by BLAST).

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=98.68  E-value=1.1e-07  Score=72.88  Aligned_cols=70  Identities=27%  Similarity=0.375  Sum_probs=56.1

Q ss_pred             CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHH
Q 033480           29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTID   80 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~   80 (118)
                      +..+++||+|+|++.+                           ..++||+.++|+.|+++|++++++||++.. .+....
T Consensus        74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~  153 (266)
T TIGR01533        74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK  153 (266)
T ss_pred             CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence            4679999999999632                           146899999999999999999999998743 455678


Q ss_pred             HHHhCCCCCcCCCceeeh
Q 033480           81 KLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        81 ~L~~~gi~~~~fd~iits   98 (118)
                      .|+.+|++...++.+++.
T Consensus       154 ~Lkk~Gi~~~~~d~lllr  171 (266)
T TIGR01533       154 NLKRFGFPQADEEHLLLK  171 (266)
T ss_pred             HHHHcCcCCCCcceEEeC
Confidence            899999986534677754

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=98.68  E-value=6e-08  Score=72.76  Aligned_cols=60  Identities=27%  Similarity=0.351  Sum_probs=52.2

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      |.++.+++|+||||++... +-+.+.++|++++++|++++++|+++  ...+...++.+++..
T Consensus         1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~--~~~~~~~~~~l~~~~   61 (264)
T COG0561           1 MMIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRP--LPDVLSILEELGLDG   61 (264)
T ss_pred             CCeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHcCCCc
Confidence            4789999999999998876 66999999999999999999999864  356778889999874

>PLN02940 riboflavin kinase

Probab=98.68  E-value=5e-08  Score=77.81  Aligned_cols=53  Identities=30%  Similarity=0.460  Sum_probs=44.8

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH-hCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-SLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~-~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++.  .+...++ .+|+..+ ||.+++++++
T Consensus        93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~--~~~~~l~~~~gl~~~-Fd~ii~~d~v  146 (382)
T PLN02940         93 KALPGANRLIKHLKSHGVPMALASNSPRA--NIEAKISCHQGWKES-FSVIVGGDEV  146 (382)
T ss_pred             CCCcCHHHHHHHHHHCCCcEEEEeCCcHH--HHHHHHHhccChHhh-CCEEEehhhc
Confidence            46899999999999999999999998653  3556776 6899888 7999999875

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.67  E-value=3.8e-08  Score=81.53  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCCC----------hH
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRR----------AS   76 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~----------~~   76 (118)
                      +...+..  ..|.++||+||||....             .++||+.+.|++|+++|++++|+||.+..          ..
T Consensus       160 ~~~~~~~--~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~  237 (526)
T TIGR01663       160 TAAGVKG--QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKA  237 (526)
T ss_pred             ecCCcCc--cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHH
Confidence            3444545  68999999999998642             15899999999999999999999998652          02


Q ss_pred             HHHHHHHhCCCCCcCCCceeehH
Q 033480           77 TTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        77 ~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      .+...|+.+|++   |+.+++++
T Consensus       238 ki~~iL~~lgip---fdviia~~  257 (526)
T TIGR01663       238 KIEAIVAKLGVP---FQVFIAIG  257 (526)
T ss_pred             HHHHHHHHcCCc---eEEEEeCC
Confidence            356778889986   57777654

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=98.66  E-value=5.4e-08  Score=69.88  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             CCcEEEEeccCcccCCCccCcc-----------HHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPG-----------AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pg-----------a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      .++.++||+||||..+.-.+..           =...|+.|+++|++++|+||+++.  .+...++.+|+..+ |+.+-.
T Consensus         6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~--~~~~~l~~lgi~~~-f~~~kp   82 (169)
T TIGR02726         6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSG--AVRHRAEELKIKRF-HEGIKK   82 (169)
T ss_pred             cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcH--HHHHHHHHCCCcEE-EecCCC
Confidence            6999999999999998643311           123789999999999999998653  46689999999987 676654


Q ss_pred             hHHHHHHHHHhcc
Q 033480           98 SGELTHQYLLRLI  110 (118)
Q Consensus        98 s~~v~~~~l~~~~  110 (118)
                      .-+....++.+..
T Consensus        83 kp~~~~~~~~~l~   95 (169)
T TIGR02726        83 KTEPYAQMLEEMN   95 (169)
T ss_pred             CHHHHHHHHHHcC
Confidence            5555666666654

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>PTZ00174 phosphomannomutase; Provisional

Probab=98.66  E-value=6.3e-08  Score=72.62  Aligned_cols=54  Identities=22%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~   83 (118)
                      |.++.+++|+||||+++.. +.|...++|++++++|+.++++|+++  ...+...++
T Consensus         3 ~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~--~~~i~~~l~   57 (247)
T PTZ00174          3 MKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSD--YPKIKEQLG   57 (247)
T ss_pred             CCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHh
Confidence            7899999999999998875 66899999999999999999999864  334445554

>KOG1618 consensus Predicted phosphatase [General function prediction only]

Probab=98.66  E-value=5.8e-08  Score=75.98  Aligned_cols=77  Identities=26%  Similarity=0.352  Sum_probs=64.5

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHC----CCcEEEEeCCCCCh-HHHHHHHH-hCCCCCcCCCceeehHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSRRA-STTIDKLK-SLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~----Gi~v~I~TN~~r~~-~~~~~~L~-~~gi~~~~fd~iits~~v~  102 (118)
                      +.-+|.||+||||.++.+++||+.++++.|.++    .+|.+++||++... ..-.+.|. .+|..+.. |+++-|+...
T Consensus        34 ~~fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~-dqviqSHsP~  112 (389)
T KOG1618|consen   34 PTFGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSA-DQVIQSHSPF  112 (389)
T ss_pred             CceeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCH-HHHHhhcChH
Confidence            345799999999999999999999999999888    89999999987432 22335554 48999886 9999999998


Q ss_pred             HHHH
Q 033480          103 HQYL  106 (118)
Q Consensus       103 ~~~l  106 (118)
                      +.+.
T Consensus       113 r~l~  116 (389)
T KOG1618|consen  113 RLLV  116 (389)
T ss_pred             HHHh
Confidence            8877

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=98.64  E-value=1.2e-07  Score=68.32  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=57.0

Q ss_pred             CCcEEEEeccCcccCC-------Cc-cCccHH---HHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVLHDG-------KK-PYPGAI---STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~-------~~-~~pga~---e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      .++.+++|+||||+.+       .+ ..+-..   ..++.|+++|++++|+||++.  ..+...++.+|+..+ |+..-.
T Consensus        20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~--~~v~~~l~~lgl~~~-f~g~~~   96 (183)
T PRK09484         20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKS--KLVEDRMTTLGITHL-YQGQSN   96 (183)
T ss_pred             CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCc--HHHHHHHHHcCCcee-ecCCCc
Confidence            6999999999999975       22 222222   578999999999999999754  446788899999877 564433


Q ss_pred             hHHHHHHHHHhcc
Q 033480           98 SGELTHQYLLRLI  110 (118)
Q Consensus        98 s~~v~~~~l~~~~  110 (118)
                      ..+....++++..
T Consensus        97 k~~~l~~~~~~~g  109 (183)
T PRK09484         97 KLIAFSDLLEKLA  109 (183)
T ss_pred             HHHHHHHHHHHhC
Confidence            3444556566554

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=98.64  E-value=2.3e-07  Score=66.55  Aligned_cols=85  Identities=20%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             HHHHhhcCCcEEEEeccCcccCCCc--cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           22 RHIAETRRFKAWLLDQFGVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        22 ~~~~~~~~~~~~~~D~DGtL~~~~~--~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      +.+.+ ++++++++|+|.||.....  .-|++.+.+++++..|+++.|+||+++.  .+....+.+|++-. +-.---..
T Consensus        21 ~~L~~-~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~--RV~~~~~~l~v~fi-~~A~KP~~   96 (175)
T COG2179          21 DILKA-HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKES--RVARAAEKLGVPFI-YRAKKPFG   96 (175)
T ss_pred             HHHHH-cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHH--HHHhhhhhcCCcee-ecccCccH
Confidence            34444 6899999999999976554  5699999999999999999999998653  36677888998743 34555555


Q ss_pred             HHHHHHHHhcc
Q 033480          100 ELTHQYLLRLI  110 (118)
Q Consensus       100 ~v~~~~l~~~~  110 (118)
                      ...++.|+++.
T Consensus        97 ~~fr~Al~~m~  107 (175)
T COG2179          97 RAFRRALKEMN  107 (175)
T ss_pred             HHHHHHHHHcC
Confidence            66777787776

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=98.64  E-value=1.3e-07  Score=71.26  Aligned_cols=84  Identities=12%  Similarity=0.064  Sum_probs=57.6

Q ss_pred             ccchhhHHHHHhhcCCcEEEEeccCcccCCC-----------------------------------ccCccHHHHHHHHH
Q 033480           15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLA   59 (118)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~-----------------------------------~~~pga~e~L~~Lk   59 (118)
                      ..+.+.+++-+.-++.-.+.||+|||++.+.                                   .++||+.++|++|+
T Consensus        48 ~~~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~  127 (237)
T PRK11009         48 WVSVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHV  127 (237)
T ss_pred             EEEHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHH
Confidence            3344455544441123389999999998521                                   24677999999999


Q ss_pred             HCCCcEEEEeCCCCC-hH-HHHHHHHhCCC--CCcCCCceeehH
Q 033480           60 TTGAKMVVISNSSRR-AS-TTIDKLKSLGF--DPSLFAGAITSG   99 (118)
Q Consensus        60 ~~Gi~v~I~TN~~r~-~~-~~~~~L~~~gi--~~~~fd~iits~   99 (118)
                      ++|++++++||++.. .. .....++.+|+  ..+ |+.+++++
T Consensus       128 ~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~-f~vil~gd  170 (237)
T PRK11009        128 KRGDSIYFITGRTATKTETVSKTLADDFHIPADNM-NPVIFAGD  170 (237)
T ss_pred             HCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccc-eeEEEcCC
Confidence            999999999997632 22 33444456999  666 67777766

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.63  E-value=9e-08  Score=74.31  Aligned_cols=59  Identities=19%  Similarity=0.157  Sum_probs=49.6

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      +|.||+|+||||++... ..+.+.++|++|+++|++++++|+++  ..++...++.+++..+
T Consensus         1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt--~~ev~~l~~~Lgl~~p   60 (302)
T PRK12702          1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRT--RAQLEHLCRQLRLEHP   60 (302)
T ss_pred             CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHhCCCCe
Confidence            47899999999998554 67889999999999999999999864  3557778888998754

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=98.63  E-value=1.3e-07  Score=68.69  Aligned_cols=53  Identities=26%  Similarity=0.430  Sum_probs=44.2

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ..++||+.++|+.|+++|++++++||+..  ..+...++.+|+..+ |+.++++++
T Consensus        92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  144 (226)
T PRK13222         92 SRLYPGVKETLAALKAAGYPLAVVTNKPT--PFVAPLLEALGIADY-FSVVIGGDS  144 (226)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCccC-ccEEEcCCC
Confidence            45789999999999999999999999854  345678889999888 788887654

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=98.61  E-value=9.4e-08  Score=72.79  Aligned_cols=53  Identities=26%  Similarity=0.379  Sum_probs=44.3

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ..++||+.++|+.|+++|++++|+||+++.  .+...++.+++..+ |+.++++++
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~--~~~~~l~~~~i~~~-f~~i~~~d~  152 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPER--FVAPLLDQMKIGRY-FRWIIGGDT  152 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHH--HHHHHHHHcCcHhh-CeEEEecCC
Confidence            356899999999999999999999998643  35578888999888 798888764

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=98.60  E-value=1.3e-07  Score=67.21  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=41.9

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++|+ .+.|+.|++. ++++|+||+++.  .+...|+.+|+..+ ||.+++++++
T Consensus        87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~--~~~~~l~~~~l~~~-fd~i~~~~~~  138 (188)
T PRK10725         87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESA--IAEALLAHLGLRRY-FDAVVAADDV  138 (188)
T ss_pred             CCCccH-HHHHHHHHhC-CCEEEEcCCchH--HHHHHHHhCCcHhH-ceEEEehhhc
Confidence            356674 5888888765 899999997653  46688999999998 7999999875

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=98.59  E-value=1.5e-07  Score=70.53  Aligned_cols=54  Identities=24%  Similarity=0.245  Sum_probs=46.8

Q ss_pred             EEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        33 ~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++|+||||+++.. .++.+.++|++|+++|++++++|++  +...+...++.+|+.
T Consensus         2 i~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR--~~~~~~~~~~~~~~~   56 (256)
T TIGR01486         2 IFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSK--TAAEVEYLRKELGLE   56 (256)
T ss_pred             EEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCC--CHHHHHHHHHHcCCC
Confidence            78999999999877 7788999999999999999999975  445577888888875

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>PLN02887 hydrolase family protein

Probab=98.59  E-value=1.7e-07  Score=78.45  Aligned_cols=59  Identities=22%  Similarity=0.293  Sum_probs=49.9

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++|.+++|+||||+++.. +-+...++|++|+++|+.++++|+++  ...+...++.+++.
T Consensus       306 ~~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~--~~~i~~~l~~L~l~  365 (580)
T PLN02887        306 PKFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATGKA--RPAVIDILKMVDLA  365 (580)
T ss_pred             cCccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHhCcc
Confidence            4899999999999998765 67999999999999999999999864  34466777777764

>smart00775 LNS2 LNS2 domain

Probab=98.59  E-value=1.6e-07  Score=66.53  Aligned_cols=52  Identities=15%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             EEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCCCh-HHHHHHHHh
Q 033480           33 WLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKS   84 (118)
Q Consensus        33 ~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~~~~~~L~~   84 (118)
                      +++|+||||++..            ...|++.+++++++++|++++++|+++... ......|..
T Consensus         2 VisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~   66 (157)
T smart00775        2 VISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ   66 (157)
T ss_pred             EEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence            7899999999875            467999999999999999999999876332 222355555

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=98.58  E-value=1.7e-07  Score=68.52  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=45.3

Q ss_pred             EEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        33 ~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++|+||||+++.. ..+.+.++|++|+++|++++++||++.  ..+...++.+++.
T Consensus         2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~--~~~~~~~~~l~~~   56 (221)
T TIGR02463         2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTA--AEVEYLQKALGLT   56 (221)
T ss_pred             EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCCC
Confidence            78999999998765 566699999999999999999998754  4466777888875

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=98.55  E-value=2.8e-07  Score=73.18  Aligned_cols=65  Identities=25%  Similarity=0.368  Sum_probs=50.7

Q ss_pred             CCcEEEEeccCcccCC------------CccCccHHHHHHHHHHCCCcEEEEeCCCC-------------ChHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDG------------KKPYPGAISTLEMLATTGAKMVVISNSSR-------------RASTTIDKLK   83 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-------------~~~~~~~~L~   83 (118)
                      +.+.+|||.||||+..            ..++||+.++|++|+++|++++|+||++.             ....+...++
T Consensus         1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~   80 (354)
T PRK05446          1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE   80 (354)
T ss_pred             CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence            3688999999999875            45799999999999999999999999620             1223456778


Q ss_pred             hCCCCCcCCCcee
Q 033480           84 SLGFDPSLFAGAI   96 (118)
Q Consensus        84 ~~gi~~~~fd~ii   96 (118)
                      .+|+.   |+.++
T Consensus        81 ~~gl~---fd~i~   90 (354)
T PRK05446         81 SQGIK---FDEVL   90 (354)
T ss_pred             HcCCc---eeeEE
Confidence            88884   46654

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=98.55  E-value=2.2e-07  Score=67.36  Aligned_cols=54  Identities=31%  Similarity=0.406  Sum_probs=45.9

Q ss_pred             EEEeccCcccCCC-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           33 WLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        33 ~~~D~DGtL~~~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++|+||||++.. .+.|...++|++|+++|++++++|++  ....+...++.+++.
T Consensus         1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR--~~~~~~~~~~~~~~~   55 (254)
T PF08282_consen    1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGR--SYSSIKRLLKELGID   55 (254)
T ss_dssp             EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSS--THHHHHHHHHHTTHC
T ss_pred             cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccC--cccccccccccccch
Confidence            6899999998755 46799999999999999999999976  445577888888876

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=98.54  E-value=4.1e-07  Score=66.19  Aligned_cols=45  Identities=29%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA   93 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd   93 (118)
                      .++||+.++|+.|+++|++++|+||+.+  ..+...++.+|+... |+
T Consensus        85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~--~~~~~~l~~~~i~~~-~~  129 (219)
T TIGR00338        85 PLTEGAEELVKTLKEKGYKVAVISGGFD--LFAEHVKDKLGLDAA-FA  129 (219)
T ss_pred             CcCCCHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCCce-Ee
Confidence            4679999999999999999999999754  345677888998776 54

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=98.54  E-value=2.9e-07  Score=68.73  Aligned_cols=55  Identities=25%  Similarity=0.361  Sum_probs=46.1

Q ss_pred             EEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+++|+||||+++.. +.+.+.++|++|+++|++++++|+++.  ..+...++.+++.
T Consensus         1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~--~~~~~~~~~~~~~   56 (256)
T TIGR00099         1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPY--KEVKNILKELGLD   56 (256)
T ss_pred             CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence            378999999998765 568999999999999999999998753  4466777888875

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=98.51  E-value=2.5e-07  Score=67.42  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=44.1

Q ss_pred             EEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        33 ~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++|+||||+++.. +.|.+.++|++|+++|++++++|+++.  ..+...++.+++.
T Consensus         1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~--~~~~~~~~~l~~~   55 (225)
T TIGR01482         1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSV--QFARALAKLIGTP   55 (225)
T ss_pred             CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCch--HHHHHHHHHhCCC
Confidence            58999999998765 568899999999999999999998653  3455677778754

catalyze the same reaction as SPP.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=98.46  E-value=4.5e-07  Score=64.71  Aligned_cols=50  Identities=14%  Similarity=0.085  Sum_probs=39.4

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      ...++||+.++|+.|+++|++++|+||+.+  ..+...++.+|+... |+..+
T Consensus        78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~--~~~~~~l~~~g~~~~-~~~~~  127 (201)
T TIGR01491        78 EISLRDYAEELVRWLKEKGLKTAIVSGGIM--CLAKKVAEKLNPDYV-YSNEL  127 (201)
T ss_pred             hCCCCccHHHHHHHHHHCCCEEEEEeCCcH--HHHHHHHHHhCCCeE-EEEEE
Confidence            346789999999999999999999999854  345677888998765 45444

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>PLN02954 phosphoserine phosphatase

Probab=98.41  E-value=9.4e-07  Score=64.51  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=34.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      ++||+.++|+.|+++|++++|+||+.+  ..+...++.+|++
T Consensus        85 l~pg~~e~l~~l~~~g~~~~IvS~~~~--~~i~~~l~~~gi~  124 (224)
T PLN02954         85 LSPGIPELVKKLRARGTDVYLVSGGFR--QMIAPVAAILGIP  124 (224)
T ss_pred             CCccHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHhCCC
Confidence            569999999999999999999999865  3466778889986

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=98.39  E-value=5.3e-07  Score=67.55  Aligned_cols=55  Identities=22%  Similarity=0.305  Sum_probs=48.3

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ...++||+.++|++|+++|++++|+||+++  ..+...|+++|+..+ |+.+++++++
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~--~~~~~~l~~~gl~~~-Fd~iv~~~~~  160 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPR--ENAELMISLLGLSDF-FQAVIIGSEC  160 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHHcCChhh-CcEEEecCcC
Confidence            456899999999999999999999999865  446788999999998 7999999874

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=98.33  E-value=1.6e-06  Score=63.25  Aligned_cols=51  Identities=25%  Similarity=0.291  Sum_probs=40.0

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC-ceeehHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA-GAITSGE  100 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd-~iits~~  100 (118)
                      ...++||+.++|+.|   +++++|+||+++  ..+...|+.+|+..+ |+ .++++.+
T Consensus        86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~--~~~~~~l~~~~l~~~-F~~~v~~~~~  137 (221)
T PRK10563         86 ELEPIAGANALLESI---TVPMCVVSNGPV--SKMQHSLGKTGMLHY-FPDKLFSGYD  137 (221)
T ss_pred             cCCcCCCHHHHHHHc---CCCEEEEeCCcH--HHHHHHHHhcChHHh-CcceEeeHHh
Confidence            346789999999988   489999999854  346678999999988 76 4666654

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=98.32  E-value=1.4e-06  Score=62.59  Aligned_cols=55  Identities=22%  Similarity=0.390  Sum_probs=47.4

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ...++||+.++|++|+++|++++++||++.  ..+...++.+|+..+ ||.+++++++
T Consensus        90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~  144 (198)
T TIGR01428        90 RLPPHPDVPAGLRALKERGYRLAILSNGSP--AMLKSLVKHAGLDDP-FDAVLSADAV  144 (198)
T ss_pred             cCCCCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHCCChhh-hheeEehhhc
Confidence            446789999999999999999999999854  446688899999888 7999998875

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=98.30  E-value=4.6e-06  Score=60.66  Aligned_cols=66  Identities=33%  Similarity=0.449  Sum_probs=50.5

Q ss_pred             CCcEEEEeccCcccCCCc----------cCccHHHHHHHHHHCCCcEEEEeCCC---CC----------hHHHHHHHHhC
Q 033480           29 RFKAWLLDQFGVLHDGKK----------PYPGAISTLEMLATTGAKMVVISNSS---RR----------ASTTIDKLKSL   85 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~----------~~pga~e~L~~Lk~~Gi~v~I~TN~~---r~----------~~~~~~~L~~~   85 (118)
                      ..+.+|+|.||||..+..          +.||+.+++..|++.|++++++||.+   |.          +..+...|+..
T Consensus         4 ~~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~   83 (181)
T COG0241           4 DQKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ   83 (181)
T ss_pred             CCcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc
Confidence            468999999999986543          68999999999999999999999964   21          22355667777


Q ss_pred             CCCCcCCCceee
Q 033480           86 GFDPSLFAGAIT   97 (118)
Q Consensus        86 gi~~~~fd~iit   97 (118)
                      |..   ||.+..
T Consensus        84 gv~---id~i~~   92 (181)
T COG0241          84 GVK---IDGILY   92 (181)
T ss_pred             CCc---cceEEE
Confidence            763   455553

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.30  E-value=1.8e-06  Score=76.63  Aligned_cols=53  Identities=21%  Similarity=0.404  Sum_probs=44.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC-CcCCCceeehHHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD-PSLFAGAITSGELT  102 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~-~~~fd~iits~~v~  102 (118)
                      ++||+.++|++|+++|++++|+||+.+  ..+...|+++|+. .+ ||.+++++++.
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~--~~~~~~L~~~gl~~~~-Fd~iv~~~~~~  215 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADR--IKVDANLAAAGLPLSM-FDAIVSADAFE  215 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcH--HHHHHHHHHcCCChhH-CCEEEECcccc
Confidence            478999999999999999999999854  3466788999996 66 79999988653

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=98.28  E-value=8.9e-07  Score=64.34  Aligned_cols=54  Identities=31%  Similarity=0.441  Sum_probs=46.5

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|++|+++|++++|+||+++.  .+...++.+|+..+ ||.+++++++
T Consensus        93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~--~~~~~l~~~~l~~~-f~~i~~~~~~  146 (221)
T TIGR02253        93 LRVYPGVRDTLMELRESGYRLGIITDGLPV--KQWEKLERLGVRDF-FDAVITSEEE  146 (221)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEeCCchH--HHHHHHHhCChHHh-ccEEEEeccC
Confidence            468999999999999999999999998643  35678999999998 7999988665

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=98.24  E-value=3.2e-06  Score=60.26  Aligned_cols=79  Identities=25%  Similarity=0.354  Sum_probs=58.1

Q ss_pred             CCcEEEEeccCcccCCCccCccHH-----------HHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAI-----------STLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~-----------e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      ++|.+++|+||||.++.-.+..--           -.|+.|.+.|++++|+|+.  ....+..+.+.+|+... |-.+--
T Consensus         7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr--~s~ive~Ra~~LGI~~~-~qG~~d   83 (170)
T COG1778           7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGR--DSPIVEKRAKDLGIKHL-YQGISD   83 (170)
T ss_pred             hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCC--CCHHHHHHHHHcCCcee-eechHh
Confidence            899999999999999863332211           1578889999999999975  44568899999999866 556555


Q ss_pred             hHHHHHHHHHhcc
Q 033480           98 SGELTHQYLLRLI  110 (118)
Q Consensus        98 s~~v~~~~l~~~~  110 (118)
                      ...+..+.+.+..
T Consensus        84 K~~a~~~L~~~~~   96 (170)
T COG1778          84 KLAAFEELLKKLN   96 (170)
T ss_pred             HHHHHHHHHHHhC
Confidence            5555556665543

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=98.23  E-value=5.2e-06  Score=59.72  Aligned_cols=44  Identities=25%  Similarity=0.471  Sum_probs=35.7

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA   93 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd   93 (118)
                      +++||+.++|+.|+++ ++++|+||+.+  ..+...++.+|++.+ |+
T Consensus        68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~--~~~~~~l~~~gl~~~-f~  111 (205)
T PRK13582         68 DPLPGAVEFLDWLRER-FQVVILSDTFY--EFAGPLMRQLGWPTL-FC  111 (205)
T ss_pred             CCCCCHHHHHHHHHhc-CCEEEEeCCcH--HHHHHHHHHcCCchh-hc
Confidence            3579999999999999 99999999854  345678888998765 44

>TIGR01675 plant-AP plant acid phosphatase

Probab=98.23  E-value=4.8e-06  Score=62.62  Aligned_cols=68  Identities=21%  Similarity=0.337  Sum_probs=54.2

Q ss_pred             CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCC-ChHHHHH
Q 033480           29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTID   80 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~~~~~~~   80 (118)
                      +..+++||+|.|++.+                           .+++|++.++++.|+++|++++++||++. ..+...+
T Consensus        76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~  155 (229)
T TIGR01675        76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLD  155 (229)
T ss_pred             CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence            5789999999998763                           24689999999999999999999999873 2344668


Q ss_pred             HHHhCCCCCcCCCceeeh
Q 033480           81 KLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        81 ~L~~~gi~~~~fd~iits   98 (118)
                      .|...|++.+  +.++..
T Consensus       156 nL~~~G~~~~--~~LiLR  171 (229)
T TIGR01675       156 NLINAGFTGW--KHLILR  171 (229)
T ss_pred             HHHHcCCCCc--Ceeeec
Confidence            8999998863  555543

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=98.22  E-value=3.3e-06  Score=60.87  Aligned_cols=51  Identities=31%  Similarity=0.428  Sum_probs=41.6

Q ss_pred             EEEeccCcccCCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480           33 WLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (118)
Q Consensus        33 ~~~D~DGtL~~~~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~   85 (118)
                      +++|+||||+...  .+-+.+.++|++|+++|++++++|+++.  ..+...++.+
T Consensus         2 i~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~--~~~~~~~~~~   54 (204)
T TIGR01484         2 LFFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSL--AEIKELLKQL   54 (204)
T ss_pred             EEEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHhC
Confidence            7899999999764  4679999999999999999999998754  3455566553

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=98.21  E-value=3.4e-06  Score=71.72  Aligned_cols=59  Identities=20%  Similarity=0.170  Sum_probs=48.6

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      |..+.+++|+||||++... ..+.+.++|++|+++|++++++|+++.  ..+...++.+++.
T Consensus       414 ~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~--~~i~~l~~~Lgl~  473 (694)
T PRK14502        414 QFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTM--GEQDLYRNELGIK  473 (694)
T ss_pred             ceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCH--HHHHHHHHHcCCC
Confidence            4588999999999998654 567889999999999999999998653  4566677778764

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=98.20  E-value=1.8e-06  Score=64.47  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=46.9

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ....++||+.++|+.|+++|++++|+||+++  ..+...|+.+|+..++||.+++++++
T Consensus        96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~--~~~~~~l~~~gl~~~f~d~ii~~~~~  152 (253)
T TIGR01422        96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTR--EMMDVVAPEAALQGYRPDYNVTTDDV  152 (253)
T ss_pred             hcCccCCCHHHHHHHHHHCCCeEEEECCCcH--HHHHHHHHHHHhcCCCCceEEccccC
Confidence            3457899999999999999999999999864  34667889999988734888888764

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=98.18  E-value=5.5e-06  Score=59.63  Aligned_cols=58  Identities=26%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             CcEEEEeccCcccCC--------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480           30 FKAWLLDQFGVLHDG--------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~--------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~   83 (118)
                      .+.++||+|+|||..                          ..++|++.++|++|+++|++++++|.++.. +.+.+.|+
T Consensus         3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P-~~A~~~L~   81 (169)
T PF12689_consen    3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP-DWARELLK   81 (169)
T ss_dssp             -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H-HHHHHHHH
T ss_pred             CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh-HHHHHHHH
Confidence            578999999999862                          035899999999999999999999965432 45678899


Q ss_pred             hCCCC
Q 033480           84 SLGFD   88 (118)
Q Consensus        84 ~~gi~   88 (118)
                      .+++.
T Consensus        82 ~l~i~   86 (169)
T PF12689_consen   82 LLEID   86 (169)
T ss_dssp             HTT-C
T ss_pred             hcCCC
Confidence            99998

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=98.16  E-value=3.5e-06  Score=60.76  Aligned_cols=53  Identities=23%  Similarity=0.366  Sum_probs=46.1

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ..++||+.++|+.|+++|++++|+||+++  ..+...++++|+..+ |+.++++++
T Consensus        84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  136 (213)
T TIGR01449        84 TSVFPGVEATLGALRAKGLRLGLVTNKPT--PLARPLLELLGLAKY-FSVLIGGDS  136 (213)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCcHhh-CcEEEecCC
Confidence            46899999999999999999999999855  346688899999988 799998865

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=98.15  E-value=3e-06  Score=62.72  Aligned_cols=64  Identities=8%  Similarity=0.039  Sum_probs=49.0

Q ss_pred             EEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        33 ~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      +++|+||||+++...++...+.++ ++++|++++++|++  +...+...++.+++..+  +.+++.+.+
T Consensus         2 i~~DlDgTLl~~~~~~~~~~~~~~-~~~~gi~~viaTGR--~~~~v~~~~~~l~l~~~--~~~I~~nGa   65 (236)
T TIGR02471         2 IITDLDNTLLGDDEGLASFVELLR-GSGDAVGFGIATGR--SVESAKSRYAKLNLPSP--DVLIARVGT   65 (236)
T ss_pred             eEEeccccccCCHHHHHHHHHHHH-hcCCCceEEEEeCC--CHHHHHHHHHhCCCCCC--CEEEECCCc
Confidence            789999999987766666667776 68899999999975  55668888888988632  556655544

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=98.15  E-value=3.3e-06  Score=61.04  Aligned_cols=54  Identities=26%  Similarity=0.367  Sum_probs=46.4

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ...++||+.++|++|+++|++++|+||+++.  .+...++.+|+..+ |+.++++++
T Consensus        73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~--~~~~~l~~~~l~~~-f~~i~~~~~  126 (205)
T TIGR01454        73 EVEVFPGVPELLAELRADGVGTAIATGKSGP--RARSLLEALGLLPL-FDHVIGSDE  126 (205)
T ss_pred             ccccCCCHHHHHHHHHHCCCeEEEEeCCchH--HHHHHHHHcCChhh-eeeEEecCc
Confidence            4578999999999999999999999998653  35678899999988 799998765

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=98.14  E-value=1.9e-06  Score=64.52  Aligned_cols=66  Identities=21%  Similarity=0.263  Sum_probs=54.1

Q ss_pred             CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHH
Q 033480           29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTID   80 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~   80 (118)
                      +..+++||+|+|++.+                           ..++||+.++++.++++|+.|+++||++.. .....+
T Consensus        71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~  150 (229)
T PF03767_consen   71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK  150 (229)
T ss_dssp             SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred             CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence            6889999999998653                           246899999999999999999999998743 466778


Q ss_pred             HHHhCCCCCcCCCcee
Q 033480           81 KLKSLGFDPSLFAGAI   96 (118)
Q Consensus        81 ~L~~~gi~~~~fd~ii   96 (118)
                      .|+..|+...  +.++
T Consensus       151 nL~~~G~~~~--~~l~  164 (229)
T PF03767_consen  151 NLKKAGFPGW--DHLI  164 (229)
T ss_dssp             HHHHHTTSTB--SCGE
T ss_pred             HHHHcCCCcc--chhc
Confidence            9999998753  4554

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=98.13  E-value=4.8e-06  Score=62.20  Aligned_cols=63  Identities=16%  Similarity=0.023  Sum_probs=48.4

Q ss_pred             EEEEeccCcccC---CC-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480           32 AWLLDQFGVLHD---GK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        32 ~~~~D~DGtL~~---~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits   98 (118)
                      .++.|+||||++   +. +..|...+.+++++++|+.++++|++  +...+...++.+++..+  +.+|+.
T Consensus         3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR--~~~~~~~~~~~~~~~~p--~~~I~~   69 (249)
T TIGR01485         3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGR--SPHSYKELQKQKPLLTP--DIWVTS   69 (249)
T ss_pred             EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCC--CHHHHHHHHhcCCCCCC--CEEEEc
Confidence            578999999995   33 45799999999999999999999975  44556677777887643  445543

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=98.12  E-value=6.7e-06  Score=62.59  Aligned_cols=55  Identities=24%  Similarity=0.253  Sum_probs=43.1

Q ss_pred             CcEEEEeccCcccC------CCccCccHHHHHHHHHH-CCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480           30 FKAWLLDQFGVLHD------GKKPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG   86 (118)
Q Consensus        30 ~~~~~~D~DGtL~~------~~~~~pga~e~L~~Lk~-~Gi~v~I~TN~~r~~~~~~~~L~~~g   86 (118)
                      -..+++|+||||++      ...+.|.+.+.|+.|++ .|+.++|+|+++  ...+.+.++.++
T Consensus        14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~--~~~~~~~~~~~~   75 (266)
T PRK10187         14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRS--MVELDALAKPYR   75 (266)
T ss_pred             CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHhcCccc
Confidence            46899999999998      34567999999999998 799999999864  344555555444

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=98.10  E-value=5.4e-06  Score=56.86  Aligned_cols=56  Identities=36%  Similarity=0.583  Sum_probs=48.1

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ....++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++++.
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~--~~~~~~l~~~~~~~~-f~~i~~~~~~  129 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSR--ERIERVLERLGLDDY-FDEIISSDDV  129 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEH--HHHHHHHHHTTHGGG-CSEEEEGGGS
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCc--ccccccccccccccc-cccccccchh
Confidence            4557899999999999999999999999853  456789999999988 7999999843

...

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=98.09  E-value=3.5e-06  Score=59.78  Aligned_cols=59  Identities=34%  Similarity=0.464  Sum_probs=41.7

Q ss_pred             cEEEEeccCcccCCC------------ccC-ccHHHHHHHHHHCCCcEEEEeCCC---C----C-----hHHHHHHHHhC
Q 033480           31 KAWLLDQFGVLHDGK------------KPY-PGAISTLEMLATTGAKMVVISNSS---R----R-----ASTTIDKLKSL   85 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~------------~~~-pga~e~L~~Lk~~Gi~v~I~TN~~---r----~-----~~~~~~~L~~~   85 (118)
                      |.++||+||||....            .++ |++.+.|++|++.|+.++|+||.+   +    .     ...+...++.+
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l   80 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL   80 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence            568999999997642            234 689999999999999999999974   2    1     12345666778


Q ss_pred             CCCC
Q 033480           86 GFDP   89 (118)
Q Consensus        86 gi~~   89 (118)
                      +++.
T Consensus        81 ~ip~   84 (159)
T PF08645_consen   81 GIPI   84 (159)
T ss_dssp             TS-E
T ss_pred             CCce
Confidence            8764

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=98.08  E-value=1.4e-05  Score=61.49  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=54.0

Q ss_pred             CCcEEEEeccCcccCC----------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHH
Q 033480           29 RFKAWLLDQFGVLHDG----------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTI   79 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~----------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~   79 (118)
                      ...+++||+|+|++.+                            .+++|++.++.+.|+++|++++++||++.. .+...
T Consensus       100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~  179 (275)
T TIGR01680       100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE  179 (275)
T ss_pred             CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence            5689999999998721                            245899999999999999999999998743 35567


Q ss_pred             HHHHhCCCCCcCCCceeeh
Q 033480           80 DKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        80 ~~L~~~gi~~~~fd~iits   98 (118)
                      +.|++.|++.+  +.++..
T Consensus       180 ~NL~kaGy~~~--~~LiLR  196 (275)
T TIGR01680       180 ANLKKAGYHTW--EKLILK  196 (275)
T ss_pred             HHHHHcCCCCc--ceeeec
Confidence            88899999753  555543

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=98.08  E-value=5.3e-06  Score=60.36  Aligned_cols=54  Identities=20%  Similarity=0.386  Sum_probs=46.5

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC--CcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD--PSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~--~~~fd~iits~~v  101 (118)
                      ..++||+.++|+.|+++|++++|+||+++  ..+...|+.+|+.  .+ |+.+++++++
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~--~~~~~~l~~~~l~~~~~-f~~i~~~~~~  141 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDR--DTAERLLEKLGWTVGDD-VDAVVCPSDV  141 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHHhhhhhhcc-CCEEEcCCcC
Confidence            36899999999999999999999999865  3466888999998  77 7999998774

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=98.08  E-value=8.6e-06  Score=57.42  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=44.3

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|+.|+++|++++|+||+..    ....|+++|+..+ |+.+++++++
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~----~~~~l~~~~l~~~-f~~~~~~~~~  137 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASKN----APTVLEKLGLIDY-FDAIVDPAEI  137 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcc----HHHHHHhcCcHhh-CcEEEehhhc
Confidence            46899999999999999999999998642    2357899999988 7999988764

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>PRK08238 hypothetical protein; Validated

Probab=98.08  E-value=9.1e-06  Score=66.85  Aligned_cols=49  Identities=22%  Similarity=0.301  Sum_probs=40.1

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..||+.|.|++++++|++++++||+++.  .+...++.+|+    ||.++++++.
T Consensus        73 ~~pga~e~L~~lk~~G~~v~LaTas~~~--~a~~i~~~lGl----Fd~Vigsd~~  121 (479)
T PRK08238         73 YNEEVLDYLRAERAAGRKLVLATASDER--LAQAVAAHLGL----FDGVFASDGT  121 (479)
T ss_pred             CChhHHHHHHHHHHCCCEEEEEeCCCHH--HHHHHHHHcCC----CCEEEeCCCc
Confidence            3599999999999999999999998653  35577788887    5888887653

>PHA02597 30

Probab=98.06  E-value=1.1e-05  Score=57.82  Aligned_cols=55  Identities=11%  Similarity=0.191  Sum_probs=36.0

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc---CCCceeehHH
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS---LFAGAITSGE  100 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~---~fd~iits~~  100 (118)
                      ....++||+.++|++|+++ ++++++||.+....  ...++.+++..+   .|+.++++++
T Consensus        71 ~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~--~~~~~~~~l~~~f~~~f~~i~~~~~  128 (197)
T PHA02597         71 RYLSAYDDALDVINKLKED-YDFVAVTALGDSID--ALLNRQFNLNALFPGAFSEVLMCGH  128 (197)
T ss_pred             HhccCCCCHHHHHHHHHhc-CCEEEEeCCccchh--HHHHhhCCHHHhCCCcccEEEEecc
Confidence            3456899999999999987 56888888754332  234455555432   1566766554

2 hypothetical protein; Provisional

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=98.05  E-value=6.4e-06  Score=59.25  Aligned_cols=52  Identities=37%  Similarity=0.397  Sum_probs=44.7

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++.   +...++.+|+..+ ||.+++++++
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~---~~~~l~~~~l~~~-fd~i~~s~~~  156 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFDSR---LRGLLEALGLLEY-FDFVVTSYEV  156 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHCCcHHh-cceEEeeccc
Confidence            57899999999999999999999997542   4577899999888 7999988764

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>PRK09449 dUMP phosphatase; Provisional

Probab=98.05  E-value=4e-06  Score=61.18  Aligned_cols=53  Identities=26%  Similarity=0.365  Sum_probs=45.0

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|+.|+ +|++++|+||+++.  .....|+.+|+..+ ||.+++++++
T Consensus        94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~--~~~~~l~~~~l~~~-fd~v~~~~~~  146 (224)
T PRK09449         94 CTPLPGAVELLNALR-GKVKMGIITNGFTE--LQQVRLERTGLRDY-FDLLVISEQV  146 (224)
T ss_pred             CccCccHHHHHHHHH-hCCeEEEEeCCcHH--HHHHHHHhCChHHH-cCEEEEECcc
Confidence            468999999999999 57999999998653  35578899999998 7999998764

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.04  E-value=1.5e-05  Score=56.52  Aligned_cols=71  Identities=20%  Similarity=0.071  Sum_probs=53.3

Q ss_pred             CCcEEEEeccCcccCCC------------------------------------ccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDGK------------------------------------KPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~------------------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      +...+++|+|.||.+..                                    .+.||+.++|++|.+. +.++|+||++
T Consensus         5 ~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~   83 (156)
T TIGR02250         5 KKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGT   83 (156)
T ss_pred             CceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCc
Confidence            66778899999887632                                    1369999999999855 9999999987


Q ss_pred             CChHHHHHHHHhCCCCCcCC-CceeehHHHH
Q 033480           73 RRASTTIDKLKSLGFDPSLF-AGAITSGELT  102 (118)
Q Consensus        73 r~~~~~~~~L~~~gi~~~~f-d~iits~~v~  102 (118)
                      +..  +...++.++.....| +.+++.++..
T Consensus        84 ~~y--A~~vl~~ldp~~~~F~~ri~~rd~~~  112 (156)
T TIGR02250        84 RAY--AQAIAKLIDPDGKYFGDRIISRDESG  112 (156)
T ss_pred             HHH--HHHHHHHhCcCCCeeccEEEEeccCC
Confidence            643  457788898884227 5677766543

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>PLN02423 phosphomannomutase

Probab=98.03  E-value=7.9e-06  Score=61.44  Aligned_cols=54  Identities=20%  Similarity=0.242  Sum_probs=40.2

Q ss_pred             cCCcEEE-EeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           28 RRFKAWL-LDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        28 ~~~~~~~-~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      ++++.++ +|+||||+++.. +-|...++|++|+++ +.++++|++  ....+...+..
T Consensus         4 ~~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTGR--~~~~~~~~~~~   59 (245)
T PLN02423          4 RKPGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGGS--DLSKISEQLGK   59 (245)
T ss_pred             CccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECCc--CHHHHHHHhcc
Confidence            3566555 999999998876 457889999999976 999999976  33334444443

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=98.03  E-value=1.6e-05  Score=58.37  Aligned_cols=42  Identities=12%  Similarity=0.085  Sum_probs=34.0

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      ...+.||+.++|++|+++|++++|+||+.+.  .+...|+.+ +.
T Consensus        72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~--~i~~il~~~-~~  113 (219)
T PRK09552         72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDF--FVYPLLQGL-IP  113 (219)
T ss_pred             CCCcCcCHHHHHHHHHHcCCeEEEECCCcHH--HHHHHHHHh-CC
Confidence            3467899999999999999999999998653  355677776 53

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=98.03  E-value=5.7e-06  Score=59.94  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=43.1

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|+.|+++|++++|+||++.........+...++..+ ||.+++|.++
T Consensus        93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~-fd~v~~s~~~  148 (211)
T TIGR02247        93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMAL-FDAVVESCLE  148 (211)
T ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhh-CCEEEEeeec
Confidence            4679999999999999999999999986432222334455778777 7999988654

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=98.01  E-value=1.1e-05  Score=56.86  Aligned_cols=53  Identities=25%  Similarity=0.337  Sum_probs=45.4

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ...++||+.++|+.|+++|++++++||+    ..+...|+.+|+..+ |+.++++++.
T Consensus        86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~----~~~~~~l~~~~l~~~-f~~v~~~~~~  138 (185)
T TIGR02009        86 GAEVLPGIENFLKRLKKKGIAVGLGSSS----KNADRILAKLGLTDY-FDAIVDADEV  138 (185)
T ss_pred             CCCCCcCHHHHHHHHHHcCCeEEEEeCc----hhHHHHHHHcChHHH-CCEeeehhhC
Confidence            3578999999999999999999999987    235678899999998 7999988754

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=98.01  E-value=2.6e-05  Score=56.11  Aligned_cols=63  Identities=22%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             hcCCcEEEEeccCcccC--CCccCccHHHHHHHHHHCCCc--EEEEeCCCC-----ChHHHHHHHHhCCCCC
Q 033480           27 TRRFKAWLLDQFGVLHD--GKKPYPGAISTLEMLATTGAK--MVVISNSSR-----RASTTIDKLKSLGFDP   89 (118)
Q Consensus        27 ~~~~~~~~~D~DGtL~~--~~~~~pga~e~L~~Lk~~Gi~--v~I~TN~~r-----~~~~~~~~L~~~gi~~   89 (118)
                      .+++++++||.|.||..  ..++.|...+.++++++.+..  ++|+||+..     ..+.+...-+.+|++.
T Consensus        38 ~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv  109 (168)
T PF09419_consen   38 KKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV  109 (168)
T ss_pred             hcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE
Confidence            36899999999999964  445789999999999998765  999999841     1233444446699874

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=98.01  E-value=7.1e-06  Score=57.45  Aligned_cols=52  Identities=35%  Similarity=0.530  Sum_probs=42.4

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ..++||+.++|+.|+++|++++++||+++..   ...+.++|+..+ |+.++++++
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~---~~~~~~~~l~~~-f~~i~~~~~  135 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH---AVLVQELGLRDL-FDVVIFSGD  135 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCHHH-CCEEEEcCC
Confidence            4678999999999999999999999986533   344455999888 799998754

HAD subfamilies caused by an overly broad single model.

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=97.97  E-value=1.1e-05  Score=65.52  Aligned_cols=54  Identities=9%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|++|+++|++++|+||+++  ..+...++.+|+..+ |+.+++++++
T Consensus       329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~--~~~~~~l~~~~l~~~-f~~i~~~d~v  382 (459)
T PRK06698        329 GALYPNVKEIFTYIKENNCSIYIASNGLT--EYLRAIVSYYDLDQW-VTETFSIEQI  382 (459)
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEeCCch--HHHHHHHHHCCcHhh-cceeEecCCC
Confidence            46799999999999999999999999865  346788999999998 7999998764

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=97.96  E-value=1.1e-05  Score=60.84  Aligned_cols=56  Identities=14%  Similarity=0.162  Sum_probs=44.7

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ...++||+.++|+.|+++|++++|+||+++  ..+...++.+++..++||.+++++++
T Consensus        99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~--~~~~~~l~~~~l~~~~~d~i~~~~~~  154 (267)
T PRK13478         99 YATPIPGVLEVIAALRARGIKIGSTTGYTR--EMMDVVVPLAAAQGYRPDHVVTTDDV  154 (267)
T ss_pred             cCCCCCCHHHHHHHHHHCCCEEEEEcCCcH--HHHHHHHHHHhhcCCCceEEEcCCcC
Confidence            346899999999999999999999999865  34557778888776534888888753

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=97.95  E-value=1.3e-05  Score=57.75  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=45.1

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++.+++.++|+.|+++|++++|+||+++  ..+...|+.+|+..+ |+.+++++++
T Consensus       106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~-f~~~~~~~~~  158 (197)
T TIGR01548       106 ETLLTPKGLLRELHRAPKGMAVVTGRPR--KDAAKFLTTHGLEIL-FPVQIWMEDC  158 (197)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHcCchhh-CCEEEeecCC
Confidence            4567789999999999999999999855  446788999999988 7999988764

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=97.88  E-value=3.7e-05  Score=58.37  Aligned_cols=62  Identities=34%  Similarity=0.462  Sum_probs=51.7

Q ss_pred             CCcEEEEeccCcccCC---------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCCh--HHHH
Q 033480           29 RFKAWLLDQFGVLHDG---------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRA--STTI   79 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~---------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~--~~~~   79 (118)
                      +.+++++|+|.|++++                           ..++||+.||++..-++|..|+.+||+.+..  ....
T Consensus        78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~  157 (274)
T COG2503          78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI  157 (274)
T ss_pred             CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence            4669999999999875                           2579999999999999999999999987443  3567


Q ss_pred             HHHHhCCCCCc
Q 033480           80 DKLKSLGFDPS   90 (118)
Q Consensus        80 ~~L~~~gi~~~   90 (118)
                      +.|+..|++..
T Consensus       158 ~nLk~~g~~~~  168 (274)
T COG2503         158 ENLKSEGLPQV  168 (274)
T ss_pred             HHHHHcCcccc
Confidence            88888898754

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=97.86  E-value=4.4e-05  Score=54.12  Aligned_cols=67  Identities=16%  Similarity=0.070  Sum_probs=51.6

Q ss_pred             cEEEEeccCcccCCCc-------------------------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480           31 KAWLLDQFGVLHDGKK-------------------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~~-------------------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~   85 (118)
                      +.+++|+|+||.+...                         .=||+.|+|++|.+. +.++|.|++++..  +...++.+
T Consensus         2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y--A~~il~~l   78 (162)
T TIGR02251         2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY--ADPVLDIL   78 (162)
T ss_pred             cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH--HHHHHHHH
Confidence            5689999999975321                         128999999999887 9999999986543  55788888


Q ss_pred             CCCC-cCCCceeehHHH
Q 033480           86 GFDP-SLFAGAITSGEL  101 (118)
Q Consensus        86 gi~~-~~fd~iits~~v  101 (118)
                      +... + |+.+++.+..
T Consensus        79 dp~~~~-f~~~l~r~~~   94 (162)
T TIGR02251        79 DRGGKV-ISRRLYRESC   94 (162)
T ss_pred             CcCCCE-EeEEEEcccc
Confidence            8775 5 6888876654

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=97.83  E-value=5.9e-05  Score=53.75  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=46.6

Q ss_pred             EEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCCC-ChHHHHHHHHhC-----CCCCcCCCc
Q 033480           33 WLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSL-----GFDPSLFAG   94 (118)
Q Consensus        33 ~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~~~~~~~~L~~~-----gi~~~~fd~   94 (118)
                      +++|+||||+..+            ..-||+.++.+.++++||++.-+|+.+- ........|...     +++.   .-
T Consensus         2 VvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~---Gp   78 (157)
T PF08235_consen    2 VVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPD---GP   78 (157)
T ss_pred             EEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCC---CC
Confidence            7899999999874            2459999999999999999999998762 223444555555     6653   33


Q ss_pred             eeeh
Q 033480           95 AITS   98 (118)
Q Consensus        95 iits   98 (118)
                      ++++
T Consensus        79 v~~s   82 (157)
T PF08235_consen   79 VLLS   82 (157)
T ss_pred             EEEC
Confidence            4555

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=97.79  E-value=4.6e-05  Score=55.96  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=35.8

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA   93 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd   93 (118)
                      +++||+.++|+.+++++ +++|+||+.+  ..+...++.+|++.. |.
T Consensus        68 ~l~pga~ell~~lk~~~-~~~IVS~~~~--~~~~~il~~lgi~~~-~a  111 (203)
T TIGR02137        68 KPLEGAVEFVDWLRERF-QVVILSDTFY--EFSQPLMRQLGFPTL-LC  111 (203)
T ss_pred             CCCccHHHHHHHHHhCC-eEEEEeCChH--HHHHHHHHHcCCchh-hc
Confidence            57899999999999975 9999999754  345677889999865 54

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.78  E-value=6.7e-05  Score=56.52  Aligned_cols=60  Identities=22%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ....+|.|+||||+...--...+.+.+.+|+..|++++++|++++  .++...-+.+|++..
T Consensus         6 ~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~~SSKT~--aE~~~l~~~l~v~~~   65 (274)
T COG3769           6 MPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVILCSSKTR--AEMLYLQKSLGVQGL   65 (274)
T ss_pred             cceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEEeccchH--HHHHHHHHhcCCCCC
Confidence            467899999999999666667788999999999999999998754  344444466888743

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=97.78  E-value=3.5e-05  Score=55.78  Aligned_cols=53  Identities=25%  Similarity=0.446  Sum_probs=45.6

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|++|+++ ++++++||+++  ..+...++.+|+..+ ||.++++++.
T Consensus        96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~--~~~~~~l~~~~l~~~-fd~i~~~~~~  148 (224)
T TIGR02254        96 HQLLPGAFELMENLQQK-FRLYIVTNGVR--ETQYKRLRKSGLFPF-FDDIFVSEDA  148 (224)
T ss_pred             CeeCccHHHHHHHHHhc-CcEEEEeCCch--HHHHHHHHHCCcHhh-cCEEEEcCcc
Confidence            46899999999999999 99999999864  345678899999998 7999988763

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=97.77  E-value=9e-05  Score=58.14  Aligned_cols=42  Identities=19%  Similarity=0.124  Sum_probs=32.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      ++.||+.++|+.|+++|++++|+||+....  ....++.+|++.
T Consensus       181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~--~~~l~~~Lgld~  222 (322)
T PRK11133        181 PLMPGLTELVLKLQALGWKVAIASGGFTYF--ADYLRDKLRLDA  222 (322)
T ss_pred             CCChhHHHHHHHHHHcCCEEEEEECCcchh--HHHHHHHcCCCe
Confidence            357999999999999999999999976432  335556688753

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.76  E-value=3.4e-05  Score=56.03  Aligned_cols=54  Identities=26%  Similarity=0.417  Sum_probs=46.9

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~  102 (118)
                      .+++|++.+.|++|+++ ++++++||+.+.  .....|+.+|+..+ ||.+++|+++.
T Consensus        98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~--~~~~~l~~~gl~~~-Fd~v~~s~~~g  151 (229)
T COG1011          98 LPDYPEALEALKELGKK-YKLGILTNGARP--HQERKLRQLGLLDY-FDAVFISEDVG  151 (229)
T ss_pred             CccChhHHHHHHHHHhh-ccEEEEeCCChH--HHHHHHHHcCChhh-hheEEEecccc
Confidence            46789999999999988 999999997543  35689999999998 79999999886

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=97.74  E-value=2.7e-05  Score=56.15  Aligned_cols=53  Identities=23%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh-CCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~-~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++..  +...+.. .++..+ ||.+++|+++
T Consensus        84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~--~~~~~~~~~~l~~~-fd~v~~s~~~  137 (199)
T PRK09456         84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH--TTFWPEEYPEVRAA-ADHIYLSQDL  137 (199)
T ss_pred             ccCHHHHHHHHHHHhCCCcEEEEcCCchhh--HHHHHhhchhHHHh-cCEEEEeccc
Confidence            478999999999999999999999986532  2233333 467777 7999998774

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=97.69  E-value=9.4e-05  Score=57.25  Aligned_cols=73  Identities=21%  Similarity=0.230  Sum_probs=61.5

Q ss_pred             CCcEEEEeccCcccCCCc----cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~----~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      ....++||+|.||..+..    +.|.+.+.|.+|+++|--+++=|.+++.+  +...|+.+++..+ ||.+++.+....+
T Consensus       121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH--V~~sl~~~~L~~~-Fd~ii~~G~~~~~  197 (297)
T PF05152_consen  121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH--VRHSLKELKLEGY-FDIIICGGNKAGE  197 (297)
T ss_pred             CCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH--HHHHHHHhCCccc-cEEEEeCCccCCc
Confidence            577899999999997754    46999999999999999889998876654  6789999999988 8999988766544

>COG4996 Predicted phosphatase [General function prediction only]

Probab=97.67  E-value=0.00011  Score=51.24  Aligned_cols=65  Identities=20%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             cEEEEeccCcccCCC-------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480           31 KAWLLDQFGVLHDGK-------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~-------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~   85 (118)
                      ++++||.|||++...                         +++|.++++++++++.|+-+..+|=+-  .....+.|+.+
T Consensus         1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~--~~kA~~aLral   78 (164)
T COG4996           1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF--EDKAIKALRAL   78 (164)
T ss_pred             CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc--hHHHHHHHHHh
Confidence            368999999998752                         357899999999999998776666442  24467899999


Q ss_pred             CCCCcCCCceeeh
Q 033480           86 GFDPSLFAGAITS   98 (118)
Q Consensus        86 gi~~~~fd~iits   98 (118)
                      ++..+ |+.++.-
T Consensus        79 ~~~~y-Fhy~Vie   90 (164)
T COG4996          79 DLLQY-FHYIVIE   90 (164)
T ss_pred             chhhh-EEEEEec
Confidence            99999 7877654

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=97.65  E-value=8.8e-05  Score=52.17  Aligned_cols=51  Identities=18%  Similarity=0.237  Sum_probs=43.2

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits   98 (118)
                      ..+.||+.++|+.|+++|++++|+||+.+  ..+...++.+|+..+ |+.++++
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~--~~~~~~l~~~~l~~~-f~~i~~~  121 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGND--FFIDPVLEGIGEKDV-FIEIYSN  121 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcH--HHHHHHHHHcCChhh-eeEEecc
Confidence            57889999999999999999999999854  345677888999888 7888864

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=97.59  E-value=8.3e-05  Score=51.09  Aligned_cols=53  Identities=28%  Similarity=0.271  Sum_probs=41.2

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      +...+||+.++|+.|+++|++++|+||+++.  .+...++.+ +..+ |+.++++++
T Consensus        62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~--~~~~~~~~~-l~~~-f~~i~~~~~  114 (154)
T TIGR01549        62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLR--AQKLLLRKH-LGDY-FDLILGSDE  114 (154)
T ss_pred             hheeccCHHHHHHHHHHCcCeEEEEeCCchH--HHHHHHHHH-HHhc-CcEEEecCC
Confidence            3456799999999999999999999998654  345666666 6666 688887664

HAD subfamilies caused by an overly broad single model.

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=97.58  E-value=8e-05  Score=59.02  Aligned_cols=62  Identities=24%  Similarity=0.262  Sum_probs=48.1

Q ss_pred             eccCcccCCC--------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC-C-------CCCcCCCceeehH
Q 033480           36 DQFGVLHDGK--------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL-G-------FDPSLFAGAITSG   99 (118)
Q Consensus        36 D~DGtL~~~~--------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~-g-------i~~~~fd~iits~   99 (118)
                      ..+|++.+..        .+.||+.++|++|+++|++++|+||+++.  .+...|+.+ |       +..+ ||.||++.
T Consensus       166 h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~--yt~~im~~l~g~~~~~~~w~~y-FD~IIt~a  242 (343)
T TIGR02244       166 HRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYD--YTDKGMKYLLGPFLGEHDWRDY-FDVVIVDA  242 (343)
T ss_pred             cccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHhhCCcccccchHhh-CcEEEeCC
Confidence            3567765432        45899999999999999999999998653  355677775 6       8888 79998876


Q ss_pred             H
Q 033480          100 E  100 (118)
Q Consensus       100 ~  100 (118)
                      .
T Consensus       243 ~  243 (343)
T TIGR02244       243 R  243 (343)
T ss_pred             C
Confidence            4

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PLN02811 hydrolase

Probab=97.58  E-value=7.6e-05  Score=54.70  Aligned_cols=53  Identities=15%  Similarity=0.140  Sum_probs=41.3

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHH-HHHhCCCCCcCCCceeehH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~-~L~~~gi~~~~fd~iits~   99 (118)
                      ...++||+.++|+.|+++|++++|+||+++..  +.. .++..++..+ |+.+++++
T Consensus        76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~--~~~~~~~~~~l~~~-f~~i~~~~  129 (220)
T PLN02811         76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRH--FDLKTQRHGELFSL-MHHVVTGD  129 (220)
T ss_pred             hCCCCccHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHcccHHHHhh-CCEEEECC
Confidence            45679999999999999999999999986532  223 3334567777 79999988

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=97.47  E-value=0.00034  Score=51.83  Aligned_cols=43  Identities=30%  Similarity=0.342  Sum_probs=34.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+.||+.+.+++++++|.+++|+|++..  ..+....+.+|++..
T Consensus        77 ~l~~ga~elv~~lk~~G~~v~iiSgg~~--~lv~~ia~~lg~d~~  119 (212)
T COG0560          77 RLTPGAEELVAALKAAGAKVVIISGGFT--FLVEPIAERLGIDYV  119 (212)
T ss_pred             cCCccHHHHHHHHHHCCCEEEEEcCChH--HHHHHHHHHhCCchh
Confidence            4579999999999999999999998743  334556677888755

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=97.46  E-value=0.00046  Score=59.21  Aligned_cols=66  Identities=21%  Similarity=0.132  Sum_probs=47.3

Q ss_pred             hhHHHHHhhcCCcEEEEeccCcccCCC------ccCccHHHHHHHHHH-CCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480           19 NGLRHIAETRRFKAWLLDQFGVLHDGK------KPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLG   86 (118)
Q Consensus        19 ~~~~~~~~~~~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~-~Gi~v~I~TN~~r~~~~~~~~L~~~g   86 (118)
                      +.+.+-..+.+.+.+++|+||||+...      .+-+.+.++|++|.+ .|+.++|+|+++.  ..+...+..++
T Consensus       481 ~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~--~~l~~~~~~~~  553 (726)
T PRK14501        481 EEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDR--DTLERWFGDLP  553 (726)
T ss_pred             HHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCH--HHHHHHhCCCC
Confidence            344333333468999999999999732      356899999999999 4999999998643  44555555443

>PLN03017 trehalose-phosphatase

Probab=97.40  E-value=0.00026  Score=56.58  Aligned_cols=44  Identities=20%  Similarity=0.147  Sum_probs=36.2

Q ss_pred             CCcEEEEeccCccc---C--CC-ccCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480           29 RFKAWLLDQFGVLH---D--GK-KPYPGAISTLEMLATTGAKMVVISNSSR   73 (118)
Q Consensus        29 ~~~~~~~D~DGtL~---~--~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r   73 (118)
                      +...+|+|+||||.   .  +. .+.++..++|++|. ++++++|+|+++.
T Consensus       110 k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~  159 (366)
T PLN03017        110 KQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCI  159 (366)
T ss_pred             CCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCH
Confidence            45778899999999   3  22 46799999999998 7799999998653

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=97.38  E-value=0.00013  Score=51.72  Aligned_cols=52  Identities=23%  Similarity=0.366  Sum_probs=43.0

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ...++||+.++|++|+   ++++|+||+++  ..+...++.+|+..+ ||.+++++++
T Consensus        82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~--~~~~~~l~~~gl~~~-fd~i~~~~~~  133 (184)
T TIGR01993        82 KLKPDPELRNLLLRLP---GRKIIFTNGDR--AHARRALNRLGIEDC-FDGIFCFDTA  133 (184)
T ss_pred             hCCCCHHHHHHHHhCC---CCEEEEeCCCH--HHHHHHHHHcCcHhh-hCeEEEeecc
Confidence            3457899999999997   58999999865  346688899999988 7999988764

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=97.28  E-value=0.00023  Score=52.97  Aligned_cols=48  Identities=21%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|++|++. ++++++||++..       ++.+|+..+ ||.+++++++
T Consensus       112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-------~~~~gl~~~-fd~i~~~~~~  159 (238)
T PRK10748        112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-------PELFGLGDY-FEFVLRAGPH  159 (238)
T ss_pred             CCCCccHHHHHHHHHcC-CCEEEEECCCch-------HHHCCcHHh-hceeEecccC
Confidence            45789999999999875 999999997542       477899998 7999988764

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=97.26  E-value=0.00018  Score=50.05  Aligned_cols=66  Identities=23%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             cEEEEeccCcccCCCc--------------------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC-CC
Q 033480           31 KAWLLDQFGVLHDGKK--------------------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF-DP   89 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~~--------------------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi-~~   89 (118)
                      +.+++|+||||+....                    .=||+.+||+++.+. +.++|.|++++..  +...++.+.. ..
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y--a~~v~~~ldp~~~   77 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY--AEPVLDALDPNGK   77 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH--HHHHHHHHTTTTS
T ss_pred             CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh--hhHHHHhhhhhcc
Confidence            4789999999976431                    249999999999554 9999999986433  4456666665 23


Q ss_pred             cCCCceeehHH
Q 033480           90 SLFAGAITSGE  100 (118)
Q Consensus        90 ~~fd~iits~~  100 (118)
                      + |+.++....
T Consensus        78 ~-~~~~~~r~~   87 (159)
T PF03031_consen   78 L-FSRRLYRDD   87 (159)
T ss_dssp             S-EEEEEEGGG
T ss_pred             c-ccccccccc
Confidence            3 577775543

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>PLN02151 trehalose-phosphatase

Probab=97.21  E-value=0.00088  Score=53.39  Aligned_cols=52  Identities=21%  Similarity=0.141  Sum_probs=38.8

Q ss_pred             CCcEEEEeccCccc----CC--CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLH----DG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (118)
Q Consensus        29 ~~~~~~~D~DGtL~----~~--~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~   83 (118)
                      +...+|+|+||||.    +.  ..+.|++.++|+.|.+ +.+++|+|+++.  ..+.+.+.
T Consensus        97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~--~~l~~~~~  154 (354)
T PLN02151         97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCR--EKVSSFVK  154 (354)
T ss_pred             CceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCH--HHHHHHcC
Confidence            35688899999998    22  2467999999999984 579999998643  34445543

>PLN02382 probable sucrose-phosphatase

Probab=97.20  E-value=0.0013  Score=53.19  Aligned_cols=67  Identities=10%  Similarity=-0.133  Sum_probs=46.0

Q ss_pred             CCcEEEEeccCcccCCC--c-cCccH-HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           29 RFKAWLLDQFGVLHDGK--K-PYPGA-ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~--~-~~pga-~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      +.-.++.|+||||+++.  + .-+-. .+.+++++++|+.++++|++  +...+...++.+++..+  +.+|++.
T Consensus         8 ~~~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR--~~~~~~~l~~~~~l~~p--~~~I~~n   78 (413)
T PLN02382          8 PRLMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHDSLLVFSTGR--SPTLYKELRKEKPLLTP--DITIMSV   78 (413)
T ss_pred             CCEEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCCeeEEEEcCC--CHHHHHHHHHhCCCCCC--CEEEEcC
Confidence            34467889999999763  2 23233 44448899999999999975  44556677777887654  4456553

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=97.19  E-value=0.0013  Score=57.65  Aligned_cols=55  Identities=27%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             cCCcEEEEeccCcccCCC----ccCccHHHHHHHH-HHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           28 RRFKAWLLDQFGVLHDGK----KPYPGAISTLEML-ATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~----~~~pga~e~L~~L-k~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      .+.+.+++|+||||....    .+.|+..++|++| +..|..++|+|+.++  ..+.+.+..
T Consensus       594 ~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~--~~L~~~f~~  653 (854)
T PLN02205        594 TTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSR--KTLADWFSP  653 (854)
T ss_pred             hcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCH--HHHHHHhCC
Confidence            468999999999999654    5668999999998 667999999997643  445555543

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=97.16  E-value=0.0009  Score=49.87  Aligned_cols=48  Identities=25%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC---CCCCcCCCcee
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL---GFDPSLFAGAI   96 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~---gi~~~~fd~ii   96 (118)
                      .++||+.++|++|+++|++++|+||+++..  ....++..   ++..+ |+..+
T Consensus        95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~--~~~~~~~~~~~~L~~~-f~~~f  145 (220)
T TIGR01691        95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPA--QKLLFGHSDAGNLTPY-FSGYF  145 (220)
T ss_pred             CcCcCHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHhhccccchhhh-cceEE
Confidence            589999999999999999999999986532  33445554   45444 34433

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PTZ00445 p36-lilke protein; Provisional

Probab=97.12  E-value=0.00085  Score=50.11  Aligned_cols=57  Identities=12%  Similarity=-0.002  Sum_probs=46.4

Q ss_pred             cchhhHHHHHhhcCCcEEEEeccCcccC-----CCc-----------cCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           16 QTLNGLRHIAETRRFKAWLLDQFGVLHD-----GKK-----------PYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~D~DGtL~~-----~~~-----------~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      ..++.+.+.+.+.+++.+++|+|-||..     ..+           +-|+..+++++|++.|++++|+|=++
T Consensus        29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd  101 (219)
T PTZ00445         29 ESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSD  101 (219)
T ss_pred             HHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccc
Confidence            4456777778878999999999999876     222           34778889999999999999999764

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=97.12  E-value=0.00037  Score=52.49  Aligned_cols=67  Identities=21%  Similarity=0.174  Sum_probs=43.0

Q ss_pred             CcEEEEeccCcccCCC-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           30 FKAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ...++.|+||||+.+. .......+.++...+.++.++++|+  |+...+.+.++..+++.+  |.+|++..
T Consensus         2 ~~ll~sDlD~Tl~~~~~~~~~~l~~~l~~~~~~~~~~v~~TG--Rs~~~~~~~~~~~~l~~P--d~~I~svG   69 (247)
T PF05116_consen    2 PRLLASDLDGTLIDGDDEALARLEELLEQQARPEILFVYVTG--RSLESVLRLLREYNLPQP--DYIITSVG   69 (247)
T ss_dssp             SEEEEEETBTTTBHCHHHHHHHHHHHHHHHHCCGEEEEEE-S--S-HHHHHHHHHHCT-EE---SEEEETTT
T ss_pred             CEEEEEECCCCCcCCCHHHHHHHHHHHHHhhCCCceEEEECC--CCHHHHHHHHHhCCCCCC--CEEEecCC
Confidence            4578999999999322 2233334444423356778888886  466678889999998653  88998854

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=97.11  E-value=0.0024  Score=48.18  Aligned_cols=53  Identities=21%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             CCCccCccHHHHHHHH--HHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480           43 DGKKPYPGAISTLEML--ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        43 ~~~~~~pga~e~L~~L--k~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits   98 (118)
                      ...++.||..++++.+  ++.|..++|+|.+.  .-.+...|++.|+... |+.|+|-
T Consensus        68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaN--s~fI~~iL~~~gl~~~-f~~I~TN  122 (234)
T PF06888_consen   68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDAN--SFFIETILEHHGLRDC-FSEIFTN  122 (234)
T ss_pred             HcCCCCccHHHHHHHHHhcCCCceEEEEeCCc--HhHHHHHHHhCCCccc-cceEEeC
Confidence            3456789999999999  45799999999873  3457789999999987 7888765

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>PLN02580 trehalose-phosphatase

Probab=97.05  E-value=0.0015  Score=52.68  Aligned_cols=54  Identities=20%  Similarity=0.099  Sum_probs=40.4

Q ss_pred             cCCcEEEEeccCcccCC------CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           28 RRFKAWLLDQFGVLHDG------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      .+...+|+|+||||..-      ..+-|++.++|+.|.+. .+++|+|++++  ..+.+.+..
T Consensus       117 ~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~--~~L~~~l~~  176 (384)
T PLN02580        117 GKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSR--DKVYELVGL  176 (384)
T ss_pred             cCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCH--HHHHHHhCC
Confidence            34678899999999642      24579999999999887 58999997643  445555543

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=97.03  E-value=0.0012  Score=50.73  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=31.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG   86 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g   86 (118)
                      .++||+.++|+.|+++|++++|+||+++  ..+...++.++
T Consensus       144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~--~~~~~~l~~~~  182 (286)
T PLN02779        144 PLRPGVLRLMDEALAAGIKVAVCSTSNE--KAVSKIVNTLL  182 (286)
T ss_pred             CchhhHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHhc
Confidence            6899999999999999999999999854  33445666553

>TIGR00685 T6PP trehalose-phosphatase

Probab=97.02  E-value=0.0013  Score=49.19  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             CCcEEEEeccCcccCCC------ccCccHHHHHHHHHHC-CCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATT-GAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~-Gi~v~I~TN~~   72 (118)
                      +.+.++||+||||..-.      .+.|++.+.|+.|.+. +..++|+|+.+
T Consensus         2 ~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~   52 (244)
T TIGR00685         2 RKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRK   52 (244)
T ss_pred             CcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            56789999999998632      3568999999999776 45678999864

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=96.99  E-value=0.0021  Score=53.52  Aligned_cols=66  Identities=21%  Similarity=0.248  Sum_probs=53.4

Q ss_pred             cCCcEEEEeccCccc----CCCccCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      ...+.+++..||++.    ....+.||+.++|++|+++| ++++++||.++  ..+...++.+|++.+ |..+.
T Consensus       362 ~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~--~~a~~i~~~lgi~~~-f~~~~  432 (556)
T TIGR01525       362 QGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNR--SAAEAVAAELGIDEV-HAELL  432 (556)
T ss_pred             CCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCH--HHHHHHHHHhCCCee-eccCC
Confidence            356778888888654    35678999999999999999 99999999754  346688899999887 66654

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=96.95  E-value=0.0029  Score=48.86  Aligned_cols=45  Identities=11%  Similarity=0.078  Sum_probs=37.4

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ...+.||+.+++++|+++|++++|+|++.+  ..+...|+.+|+...
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~--~~Ie~vL~~lgl~~~  163 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIG--NVLEEVLRQAGVYHP  163 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcH--HHHHHHHHHcCCCCc
Confidence            456789999999999999999999998755  346688888888543

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=96.79  E-value=0.00054  Score=47.96  Aligned_cols=49  Identities=18%  Similarity=0.315  Sum_probs=39.6

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ....++||+.++|+       +++|+||+++.  .+...++++|+..+ ||.+++++++
T Consensus        87 ~~~~~~~g~~~~L~-------~~~i~Tn~~~~--~~~~~l~~~~l~~~-fd~v~~~~~~  135 (175)
T TIGR01493        87 KNLPPWPDSAAALA-------RVAILSNASHW--AFDQFAQQAGLPWY-FDRAFSVDTV  135 (175)
T ss_pred             hcCCCCCchHHHHH-------HHhhhhCCCHH--HHHHHHHHCCCHHH-HhhhccHhhc
Confidence            34568999999998       47999998653  45678899999998 7999988875

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PRK11590 hypothetical protein; Provisional

Probab=96.78  E-value=0.0033  Score=45.90  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=37.6

Q ss_pred             ccCccHHHHH-HHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           46 KPYPGAISTL-EMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        46 ~~~pga~e~L-~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      .++||+.+.| +.++++|++++|+||+++.  .+...++.+|+..  .+.++++.
T Consensus        95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~--~~~~il~~l~~~~--~~~~i~t~  145 (211)
T PRK11590         95 TAFPVVQERLTTYLLSSDADVWLITGSPQP--LVEQVYFDTPWLP--RVNLIASQ  145 (211)
T ss_pred             cCCccHHHHHHHHHHhCCCEEEEEeCCcHH--HHHHHHHHccccc--cCceEEEE
Confidence            5689999999 5788899999999998653  3556778888632  15666554

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=96.65  E-value=0.004  Score=43.39  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=36.9

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ....+.||+.++++.++++|++++|+|++.+  ..+...++.+|+...
T Consensus        70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~--~~i~~~~~~~g~~~~  115 (177)
T TIGR01488        70 RQVALRPGARELISWLKERGIDTVIVSGGFD--FFVEPVAEKLGIDDV  115 (177)
T ss_pred             hcCCcCcCHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCchh
Confidence            3445679999999999999999999999754  345677788888654

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=96.56  E-value=0.0047  Score=51.35  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             CCcEEEEeccCcc----cCCCccCccHHHHHHHHHHCCC-cEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL----~~~~~~~pga~e~L~~Lk~~Gi-~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      ....+++-.||++    .....+.||+.+.|++|+++|+ +++++||.++  ......++.+|++.+ |..+..
T Consensus       341 ~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~--~~a~~i~~~lgi~~~-f~~~~p  411 (536)
T TIGR01512       341 GKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRR--AVAERVARELGIDEV-HAELLP  411 (536)
T ss_pred             CCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCH--HHHHHHHHHcCChhh-hhccCc
Confidence            3455666666644    3456789999999999999999 9999998754  446688899999887 665544

.

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=96.53  E-value=0.0083  Score=46.13  Aligned_cols=54  Identities=22%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             cCCcEEEEeccCcccCCC------ccCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGK------KPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLK   83 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~------~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~   83 (118)
                      .+.+.+|+|+||||....      .+.++..++|++|.++. ..++|+|+.  +.+.+...+.
T Consensus        16 a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR--~~~~l~~~~~   76 (266)
T COG1877          16 ARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGR--SLAELERLFG   76 (266)
T ss_pred             ccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCC--CHHHHHHhcC
Confidence            378999999999997653      35789999999998884 357888864  4444454444

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=96.46  E-value=0.013  Score=51.08  Aligned_cols=55  Identities=20%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             cCCcEEEEeccCcccCC---------CccCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHh
Q 033480           28 RRFKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      .+.+.+|||+||||..-         ..+.|++.+.|+.|.+. +..++|+|+.  +.+.+.+.+..
T Consensus       505 a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR--~~~~L~~~~~~  569 (797)
T PLN03063        505 SNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRS--GKDILDKNFGE  569 (797)
T ss_pred             ccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCC--CHHHHHHHhCC
Confidence            45689999999999853         23668899999999765 6789999975  44556666654

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=96.41  E-value=0.012  Score=52.14  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             cCCcEEEEeccCcccCC---------------CccCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHhCC
Q 033480           28 RRFKAWLLDQFGVLHDG---------------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLG   86 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~---------------~~~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~~g   86 (118)
                      .+.+.+|||+||||..-               ..+.|++.+.|+.|.+. +..++|+|+.+  .+.+...+...+
T Consensus       589 a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~--~~~Le~~fg~~~  661 (934)
T PLN03064        589 SNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD--RSVLDENFGEFD  661 (934)
T ss_pred             ccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhCCCC
Confidence            45789999999999752               12558889999999775 67899999764  345666665543

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=96.37  E-value=0.0039  Score=44.36  Aligned_cols=48  Identities=25%  Similarity=0.323  Sum_probs=38.2

Q ss_pred             cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           40 VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        40 tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      .+....++.|++.++|+.|+++|++++++|+.++  ..+....+.+|+..
T Consensus       121 ~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~--~~a~~~~~~lgi~~  168 (215)
T PF00702_consen  121 LFGLRDPLRPGAKEALQELKEAGIKVAILTGDNE--STASAIAKQLGIFD  168 (215)
T ss_dssp             EEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEH--HHHHHHHHHTTSCS
T ss_pred             EEeecCcchhhhhhhhhhhhccCcceeeeecccc--cccccccccccccc
Confidence            3344567899999999999999999999997533  44667788899853

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=96.34  E-value=0.011  Score=43.39  Aligned_cols=56  Identities=23%  Similarity=0.120  Sum_probs=43.8

Q ss_pred             CCcEEEEeccCcccCCC-------cc-CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480           29 RFKAWLLDQFGVLHDGK-------KP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~-------~~-~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi   87 (118)
                      +.+.+++|+|+||.+..       .. =|++.+||+.+.+ .+.++|-|+++...  +...+..+++
T Consensus        20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y--a~~~l~~l~~   83 (195)
T TIGR02245        20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW--IEIKMTELGV   83 (195)
T ss_pred             CCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH--HHHHHHHhcc
Confidence            67899999999999742       11 3999999999977 59999999876533  4566776664

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=96.30  E-value=0.0054  Score=43.80  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .++||+.++|+.++++|++++|+||+.+.  .+...++.+|++..
T Consensus        87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~--~v~~~~~~lg~~~~  129 (202)
T TIGR01490        87 ILYPEARDLIRWHKAEGHTIVLVSASLTI--LVKPLARILGIDNA  129 (202)
T ss_pred             hccHHHHHHHHHHHHCCCEEEEEeCCcHH--HHHHHHHHcCCcce
Confidence            46899999999999999999999998643  35567788888755

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=96.27  E-value=0.01  Score=49.66  Aligned_cols=64  Identities=22%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             CCcEEEEeccCccc----CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        29 ~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      ....++++.||++.    -...+.||+.++|++|+++|++++++||..+  ..+...++.+|++ + |..+.
T Consensus       384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~--~~a~~ia~~lgi~-~-~~~~~  451 (562)
T TIGR01511       384 GSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNR--KTAKAVAKELGIN-V-RAEVL  451 (562)
T ss_pred             CCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHcCCc-E-EccCC
Confidence            46778888888663    3567899999999999999999999998754  3466788889997 3 45553

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=96.13  E-value=0.013  Score=43.07  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             ccCccHHHHHH-HHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480           46 KPYPGAISTLE-MLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (118)
Q Consensus        46 ~~~pga~e~L~-~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi   87 (118)
                      .++||+.+.|+ .++++|++++|+||+++.  .+....+..++
T Consensus        94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~--~~~~ia~~~~~  134 (210)
T TIGR01545        94 TAFPLVAERLRQYLESSDADIWLITGSPQP--LVEAVYFDSNF  134 (210)
T ss_pred             CCCccHHHHHHHHHHhCCCEEEEEcCCcHH--HHHHHHHhccc
Confidence            56899999996 788899999999998643  24455555554

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.032  Score=41.20  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG   86 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g   86 (118)
                      .+-||.+++++++++++++++|+|++....  +...+++++
T Consensus        73 ~Idp~fKef~e~ike~di~fiVvSsGm~~f--I~~lfe~iv  111 (220)
T COG4359          73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPF--IYPLFEGIV  111 (220)
T ss_pred             ccCccHHHHHHHHHHcCCCEEEEeCCCchH--HHHHHHhhc
Confidence            456999999999999999999999875432  455666654

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=95.96  E-value=0.01  Score=44.92  Aligned_cols=54  Identities=28%  Similarity=0.256  Sum_probs=44.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~  103 (118)
                      ...++..+++++|++.|..+.++||-.+.   ....+..+|+..+ ||.++.|.++..
T Consensus       113 ~~~~~~~~~lq~lR~~g~~l~iisN~d~r---~~~~l~~~~l~~~-fD~vv~S~e~g~  166 (237)
T KOG3085|consen  113 KYLDGMQELLQKLRKKGTILGIISNFDDR---LRLLLLPLGLSAY-FDFVVESCEVGL  166 (237)
T ss_pred             eeccHHHHHHHHHHhCCeEEEEecCCcHH---HHHHhhccCHHHh-hhhhhhhhhhcc
Confidence            46788999999999999888999987532   3467788999888 799999998743

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=95.86  E-value=0.012  Score=44.19  Aligned_cols=52  Identities=15%  Similarity=0.166  Sum_probs=36.4

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC-CCCcCCCceee
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG-FDPSLFAGAIT   97 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g-i~~~~fd~iit   97 (118)
                      ....++||+.++++.|+.+|++++++||+++..  +...+++++ +-.. |+.++.
T Consensus        89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~--~~~k~~~~~~~~~~-f~~~v~  141 (222)
T KOG2914|consen   89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSAS--FELKISRHEDIFKN-FSHVVL  141 (222)
T ss_pred             cccccCCcHHHHHHHHHhCCCCeeEEecCCccc--HHHHHHHhhHHHHh-cCCCee
Confidence            344678999999999999999999999987543  334455544 2222 455554

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=95.82  E-value=0.02  Score=41.80  Aligned_cols=42  Identities=14%  Similarity=0.060  Sum_probs=33.6

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi   87 (118)
                      ...+.||+.++|+.|+++|++++|+||+.+  ..+...++.++.
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~--~~i~~il~~~~~  109 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMD--FFVYPLLEGIVE  109 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcH--HHHHHHHHhhCC
Confidence            457899999999999999999999999854  334556666643

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=95.80  E-value=0.013  Score=42.33  Aligned_cols=35  Identities=26%  Similarity=0.231  Sum_probs=25.5

Q ss_pred             CcEEEEeccCcccCCCccCccHHH-HHHHHHHCCCc
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAIS-TLEMLATTGAK   64 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e-~L~~Lk~~Gi~   64 (118)
                      +++++||+||||++....+..+.. +.+.+...|.+
T Consensus         2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~   37 (221)
T TIGR02253         2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLN   37 (221)
T ss_pred             ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCc
Confidence            689999999999998776654443 44556666654

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=95.77  E-value=0.013  Score=44.15  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=26.1

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           65 MVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        65 v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      .++.||+.+.+  +.+.|+.+||.+- ||.|+.-+
T Consensus       117 k~~FTNa~k~H--A~r~Lk~LGieDc-Fegii~~e  148 (244)
T KOG3109|consen  117 KWIFTNAYKVH--AIRILKKLGIEDC-FEGIICFE  148 (244)
T ss_pred             EEEecCCcHHH--HHHHHHHhChHHh-ccceeEee
Confidence            78999987655  5699999999987 78887644

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=95.77  E-value=0.0078  Score=44.59  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=24.6

Q ss_pred             EEeccCcccCCC------ccCccHHHHHHHHHHC-CCcEEEEeCCC
Q 033480           34 LLDQFGVLHDGK------KPYPGAISTLEMLATT-GAKMVVISNSS   72 (118)
Q Consensus        34 ~~D~DGtL~~~~------~~~pga~e~L~~Lk~~-Gi~v~I~TN~~   72 (118)
                      |+|+||||..-.      .+.+++.+.|++|.+. +..++|+|+.+
T Consensus         1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~   46 (235)
T PF02358_consen    1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRS   46 (235)
T ss_dssp             EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred             CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence            799999997633      3579999999999776 44699999754

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=95.54  E-value=0.046  Score=38.26  Aligned_cols=71  Identities=11%  Similarity=0.177  Sum_probs=51.5

Q ss_pred             EEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH--HHHHHHhcc
Q 033480           34 LLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL--THQYLLRLI  110 (118)
Q Consensus        34 ~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v--~~~~l~~~~  110 (118)
                      .-++++|+..+..+++.+.+.|++|+.. +.++|+|+- |. -.+.+.++..|++.+   .++...+.  -+..++...
T Consensus        18 ~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgD-r~-gsl~~lae~~gi~~~---rv~a~a~~e~K~~ii~eLk   90 (152)
T COG4087          18 AGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGD-RK-GSLVQLAEFVGIPVE---RVFAGADPEMKAKIIRELK   90 (152)
T ss_pred             cceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCC-cc-hHHHHHHHHcCCcee---eeecccCHHHHHHHHHHhc
Confidence            3568899999999999999999999999 999999864 32 235566677898854   45544444  224444443

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.51  E-value=0.053  Score=45.15  Aligned_cols=44  Identities=23%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CCcEEEEeccCcccCCC-----------------ccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDGK-----------------KPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~-----------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      ..|++++|+|+|||.|.                 +++-.-.+.|..|+++|+-++|+|-+.
T Consensus       221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~  281 (574)
T COG3882         221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNT  281 (574)
T ss_pred             ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCc
Confidence            48999999999999874                 123335678999999999999999764

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=95.39  E-value=0.071  Score=39.66  Aligned_cols=41  Identities=22%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +-||+.|+...|+++|..++++|++=+..  +...-..+||+.
T Consensus        89 lT~Gi~eLv~~L~~~~~~v~liSGGF~~~--i~~Va~~Lgi~~  129 (227)
T KOG1615|consen   89 LTPGIRELVSRLHARGTQVYLISGGFRQL--IEPVAEQLGIPK  129 (227)
T ss_pred             cCCCHHHHHHHHHHcCCeEEEEcCChHHH--HHHHHHHhCCcH
Confidence            46999999999999999999999864432  233334566653

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=95.11  E-value=0.025  Score=42.53  Aligned_cols=19  Identities=21%  Similarity=0.170  Sum_probs=16.2

Q ss_pred             cCCcEEEEeccCcccCCCc
Q 033480           28 RRFKAWLLDQFGVLHDGKK   46 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~   46 (118)
                      |.+++++||+||||++...
T Consensus         2 ~~~k~vIFDlDGTLiDs~~   20 (267)
T PRK13478          2 MKIQAVIFDWAGTTVDFGS   20 (267)
T ss_pred             CceEEEEEcCCCCeecCCC
Confidence            4589999999999999754

>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function

Probab=94.96  E-value=0.13  Score=36.00  Aligned_cols=60  Identities=17%  Similarity=0.083  Sum_probs=43.3

Q ss_pred             cEEEEeccCccc-CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           31 KAWLLDQFGVLH-DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        31 ~~~~~D~DGtL~-~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      -..++|+||.++ -...---...+.++++.+.|.++.|+|--+.....+...-..|+-..|
T Consensus        44 giAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly  104 (138)
T PF04312_consen   44 GIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLY  104 (138)
T ss_pred             EEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCccc
Confidence            456799999664 444555677889999999999999999876555555544455665544

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=94.90  E-value=0.074  Score=46.87  Aligned_cols=71  Identities=18%  Similarity=0.376  Sum_probs=53.4

Q ss_pred             cCCcEEEEecc---------CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480           28 RRFKAWLLDQF---------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        28 ~~~~~~~~D~D---------GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits   98 (118)
                      ...+.+.+-..         |.+.-.+++.||+.++|+.|++.|++++++|+-..  ..+....+.+|+..+ ++.++++
T Consensus       501 ~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~--~tA~~ia~~~Gi~~~-~~~~v~g  577 (884)
T TIGR01522       501 AGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQ--ETAVSIARRLGMPSK-TSQSVSG  577 (884)
T ss_pred             cCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCCCCC-CCceeEh
Confidence            45777766543         44455678899999999999999999999998643  446677788999876 4666665


Q ss_pred             HHH
Q 033480           99 GEL  101 (118)
Q Consensus        99 ~~v  101 (118)
                      .+.
T Consensus       578 ~~l  580 (884)
T TIGR01522       578 EKL  580 (884)
T ss_pred             HHh
Confidence            543

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]

Probab=94.88  E-value=0.044  Score=46.93  Aligned_cols=76  Identities=12%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             CCcEEEEeccCcccCCCc---c---------CccHHHHHHHHHHCCCcEEEEeCCC-CC---hHHHHHHHHhCC--CCCc
Q 033480           29 RFKAWLLDQFGVLHDGKK---P---------YPGAISTLEMLATTGAKMVVISNSS-RR---ASTTIDKLKSLG--FDPS   90 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~---~---------~pga~e~L~~Lk~~Gi~v~I~TN~~-r~---~~~~~~~L~~~g--i~~~   90 (118)
                      +-+.++-|+||||++.+.   .         --|+.++..+++++||++..+|.++ ..   +..+...++.=|  |+.-
T Consensus       529 n~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdG  608 (738)
T KOG2116|consen  529 NDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDG  608 (738)
T ss_pred             CCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCC
Confidence            678999999999998652   1         3689999999999999999999874 22   223333443323  3322


Q ss_pred             CCCceeehHHHHHHHH
Q 033480           91 LFAGAITSGELTHQYL  106 (118)
Q Consensus        91 ~fd~iits~~v~~~~l  106 (118)
                        -.|++.+....++-
T Consensus       609 --PViLSPd~lf~Al~  622 (738)
T KOG2116|consen  609 --PVILSPDSLFAALH  622 (738)
T ss_pred             --CEEeCCCcchHHHH
Confidence              14555555555543

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=94.75  E-value=0.04  Score=40.94  Aligned_cols=17  Identities=24%  Similarity=0.165  Sum_probs=14.9

Q ss_pred             CcEEEEeccCcccCCCc
Q 033480           30 FKAWLLDQFGVLHDGKK   46 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~   46 (118)
                      +++++||+||||++...
T Consensus         2 ~k~viFD~DGTLiDs~~   18 (253)
T TIGR01422         2 IEAVIFDWAGTTVDFGS   18 (253)
T ss_pred             ceEEEEeCCCCeecCCC
Confidence            68999999999999743

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PRK09449 dUMP phosphatase; Provisional

Probab=94.54  E-value=0.028  Score=40.78  Aligned_cols=16  Identities=19%  Similarity=0.225  Sum_probs=14.6

Q ss_pred             cCCcEEEEeccCcccC
Q 033480           28 RRFKAWLLDQFGVLHD   43 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~   43 (118)
                      |.++.++||+||||++
T Consensus         1 m~~k~iiFDlDGTLid   16 (224)
T PRK09449          1 MKYDWILFDADETLFH   16 (224)
T ss_pred             CCccEEEEcCCCchhc
Confidence            5689999999999996

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=94.38  E-value=0.063  Score=43.48  Aligned_cols=62  Identities=24%  Similarity=0.292  Sum_probs=46.9

Q ss_pred             CCcEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCC---C-------hHHHHHHHHhC
Q 033480           29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSR---R-------ASTTIDKLKSL   85 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r---~-------~~~~~~~L~~~   85 (118)
                      ..+.+.||+||||....             .+.|.+..=|+.|.+.|+.++|.||...   .       ..-+..++.++
T Consensus        74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl  153 (422)
T KOG2134|consen   74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL  153 (422)
T ss_pred             CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc
Confidence            57889999999998753             2468888889999999999999999742   1       12344566667


Q ss_pred             CCCCc
Q 033480           86 GFDPS   90 (118)
Q Consensus        86 gi~~~   90 (118)
                      +++..
T Consensus       154 ~vPi~  158 (422)
T KOG2134|consen  154 GVPIQ  158 (422)
T ss_pred             CCceE
Confidence            77654

>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway

Probab=94.28  E-value=0.17  Score=41.01  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=39.9

Q ss_pred             CCcEEEEeccCcccCCCccC---ccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHHHHh
Q 033480           29 RFKAWLLDQFGVLHDGKKPY---PGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKS   84 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~---pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~L~~   84 (118)
                      +.+.+-||-|+|||.+..-+   .-+..-|-.|-++|+.++|+|..+.. ...+.++|..
T Consensus       146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~G  205 (408)
T PF06437_consen  146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHG  205 (408)
T ss_pred             CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHH
Confidence            57889999999999776433   33455555677899999999998743 3445555543

; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process

>PRK10671 copA copper exporting ATPase; Provisional

Probab=94.22  E-value=0.15  Score=44.65  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=51.2

Q ss_pred             cCCcEEEEeccCcc----cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           28 RRFKAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        28 ~~~~~~~~D~DGtL----~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      .....+++-.||.+    .-...+.||+.+.|++|+++|++++++|+.++  ......++.+|++.. |..+.
T Consensus       628 ~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~--~~a~~ia~~lgi~~~-~~~~~  697 (834)
T PRK10671        628 QGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNP--TTANAIAKEAGIDEV-IAGVL  697 (834)
T ss_pred             CCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCCCEE-EeCCC
Confidence            34666777777764    45667899999999999999999999998644  345678888999876 55554

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=93.96  E-value=0.1  Score=36.47  Aligned_cols=39  Identities=28%  Similarity=0.435  Sum_probs=31.8

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        49 pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      |++.++|++++++|++++|+|++++  ..+...++.+|++.
T Consensus        92 ~~~~e~i~~~~~~~~~v~IvS~~~~--~~i~~~~~~~~i~~  130 (192)
T PF12710_consen   92 PDAMELIRELKDNGIKVVIVSGSPD--EIIEPIAERLGIDD  130 (192)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEEEEEH--HHHHHHHHHTTSSE
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCcH--HHHHHHHHHcCCCc
Confidence            6666999999999999999998743  44667778899874

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=93.92  E-value=0.029  Score=41.90  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=18.1

Q ss_pred             hhcCCcEEEEeccCcccCCCcc
Q 033480           26 ETRRFKAWLLDQFGVLHDGKKP   47 (118)
Q Consensus        26 ~~~~~~~~~~D~DGtL~~~~~~   47 (118)
                      .++++++++||+||||++....
T Consensus        18 ~~~~~k~viFDlDGTLiDs~~~   39 (248)
T PLN02770         18 GLAPLEAVLFDVDGTLCDSDPL   39 (248)
T ss_pred             ccCccCEEEEcCCCccCcCHHH
Confidence            3347899999999999998654

>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3

Probab=93.88  E-value=0.05  Score=44.71  Aligned_cols=52  Identities=23%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCCh-HHHHHHHHhC------CCCCcCCCceeehHH
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSL------GFDPSLFAGAITSGE  100 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~~~~~~L~~~------gi~~~~fd~iits~~  100 (118)
                      -|....+|++|++.|++++++|||+... ..+...+=.-      ....+ ||.||+.+.
T Consensus       185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dl-FDvVIv~A~  243 (448)
T PF05761_consen  185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDL-FDVVIVDAR  243 (448)
T ss_dssp             -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGC-ECEEEES--
T ss_pred             CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhh-eeEEEEcCC
Confidence            5789999999999999999999986432 2233333222      45567 798887764

1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=93.71  E-value=0.24  Score=42.99  Aligned_cols=61  Identities=15%  Similarity=0.065  Sum_probs=48.2

Q ss_pred             cCCcEEEEeccCcc----cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           28 RRFKAWLLDQFGVL----HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        28 ~~~~~~~~D~DGtL----~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ...+.+++-.||++    .-.+++.|++.+.|++|+++|++++++|+..+  ..+....+.+|++.+
T Consensus       546 ~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~--~~a~~ia~~lgi~~~  610 (741)
T PRK11033        546 AGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNP--RAAAAIAGELGIDFR  610 (741)
T ss_pred             CCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHcCCCee
Confidence            35677777777754    45668899999999999999999999998643  446677888999754

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=93.62  E-value=0.061  Score=38.87  Aligned_cols=19  Identities=21%  Similarity=0.137  Sum_probs=15.9

Q ss_pred             CcEEEEeccCcccCCCccC
Q 033480           30 FKAWLLDQFGVLHDGKKPY   48 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~   48 (118)
                      ++.++||+||||.+....+
T Consensus         1 ~k~iiFD~DGTL~ds~~~~   19 (220)
T TIGR03351         1 ISLVVLDMAGTTVDEDGLV   19 (220)
T ss_pred             CcEEEEecCCCeeccCchH
Confidence            5789999999999876544

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=93.55  E-value=0.061  Score=38.38  Aligned_cols=18  Identities=33%  Similarity=0.379  Sum_probs=14.6

Q ss_pred             cEEEEeccCcccCCCccC
Q 033480           31 KAWLLDQFGVLHDGKKPY   48 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~~~~   48 (118)
                      ++++||+||||++.....
T Consensus         1 k~viFDlDGTL~d~~~~~   18 (203)
T TIGR02252         1 KLITFDAVGTLLALKEPV   18 (203)
T ss_pred             CeEEEecCCceeeeCCCH
Confidence            579999999999876443

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=93.51  E-value=0.053  Score=41.61  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=19.6

Q ss_pred             HHhhcCCcEEEEeccCcccCCC-ccC
Q 033480           24 IAETRRFKAWLLDQFGVLHDGK-KPY   48 (118)
Q Consensus        24 ~~~~~~~~~~~~D~DGtL~~~~-~~~   48 (118)
                      -.++..++.++||+||||++.. ...
T Consensus        34 ~~~~~~~k~VIFDlDGTLvDS~~~~~   59 (286)
T PLN02779         34 ASASALPEALLFDCDGVLVETERDGH   59 (286)
T ss_pred             hccccCCcEEEEeCceeEEccccHHH
Confidence            3344579999999999999987 543

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=93.33  E-value=0.34  Score=33.70  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=34.1

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      .++.+...|..|+++|+.++++|++..+ +.+.+.|+.+.+..
T Consensus        45 fY~Di~rIL~dLk~~GVtl~~ASRt~ap-~iA~q~L~~fkvk~   86 (144)
T KOG4549|consen   45 FYDDIRRILVDLKKLGVTLIHASRTMAP-QIASQGLETFKVKQ   86 (144)
T ss_pred             eccchhHHHHHHHhcCcEEEEecCCCCH-HHHHHHHHHhccCc
Confidence            4799999999999999999999987533 44567788887753

>TIGR02886 spore_II_AA anti-sigma F factor antagonist

Probab=93.23  E-value=0.62  Score=29.90  Aligned_cols=58  Identities=12%  Similarity=0.102  Sum_probs=46.8

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      +.+.+++|+-|+=+-+..-+--..+..++++++|..+.++.=+    ..+.+.|+..|+...
T Consensus        38 ~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~   95 (106)
T TIGR02886        38 PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVS----PAVKRLFELSGLFKI   95 (106)
T ss_pred             CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhCCceE
Confidence            5789999999988888777777778888999999999888532    347788999998765

The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes

>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]

Probab=93.23  E-value=0.17  Score=37.95  Aligned_cols=41  Identities=22%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             CcEEEEeccCcccC-CCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480           30 FKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNS   71 (118)
Q Consensus        30 ~~~~~~D~DGtL~~-~~~~~pga~e~L~~Lk~~Gi~v~I~TN~   71 (118)
                      .-.++||+||||.. .....|...++|+.|++. ..+.++-++
T Consensus        11 ~~l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~~-v~ig~Vggs   52 (252)
T KOG3189|consen   11 ETLCLFDVDGTLTPPRQKVTPEMLEFLQKLRKK-VTIGFVGGS   52 (252)
T ss_pred             ceEEEEecCCccccccccCCHHHHHHHHHHhhh-eEEEEeecH
Confidence            34788999999975 456789999999998765 677787654

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=93.20  E-value=0.11  Score=37.18  Aligned_cols=45  Identities=24%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             ccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCC-----hHHHHHHHHhC
Q 033480           41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRR-----ASTTIDKLKSL   85 (118)
Q Consensus        41 L~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-----~~~~~~~L~~~   85 (118)
                      ++.+.+++||+.|+|++|.+.|..++++|+++..     .....+-|++.
T Consensus        68 ~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~h  117 (191)
T PF06941_consen   68 FFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERH  117 (191)
T ss_dssp             TTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHH
T ss_pred             hhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHH
Confidence            4667789999999999999999777777776532     23334555553

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3

Probab=93.15  E-value=0.16  Score=39.01  Aligned_cols=76  Identities=20%  Similarity=0.234  Sum_probs=50.7

Q ss_pred             EEEeccCcccCCC----------------------ccC-cc----HHHHHHHHHHC------CCcEEEEeCCC-CChHHH
Q 033480           33 WLLDQFGVLHDGK----------------------KPY-PG----AISTLEMLATT------GAKMVVISNSS-RRASTT   78 (118)
Q Consensus        33 ~~~D~DGtL~~~~----------------------~~~-pg----a~e~L~~Lk~~------Gi~v~I~TN~~-r~~~~~   78 (118)
                      +.||-|+||..+.                      .|+ +|    -.+.|.+|+++      -++++++|..+ ..++.+
T Consensus       124 IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~Rv  203 (264)
T PF06189_consen  124 IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERV  203 (264)
T ss_pred             EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHH
Confidence            6799999998763                      121 22    23344445443      45789999976 556778


Q ss_pred             HHHHHhCCCCCcCCCceeehHHHHHHHHHhcc
Q 033480           79 IDKLKSLGFDPSLFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        79 ~~~L~~~gi~~~~fd~iits~~v~~~~l~~~~  110 (118)
                      ..-|+.+|+...  +..+.++.....+|+...
T Consensus       204 I~TLr~Wgv~vD--EafFLgG~~K~~vL~~~~  233 (264)
T PF06189_consen  204 IRTLRSWGVRVD--EAFFLGGLPKGPVLKAFR  233 (264)
T ss_pred             HHHHHHcCCcHh--HHHHhCCCchhHHHHhhC
Confidence            899999999865  466666666666666543

1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=92.92  E-value=0.063  Score=39.81  Aligned_cols=20  Identities=25%  Similarity=0.225  Sum_probs=16.9

Q ss_pred             CCcEEEEeccCcccCCCccC
Q 033480           29 RFKAWLLDQFGVLHDGKKPY   48 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~   48 (118)
                      ++++++||+||||++....+
T Consensus         9 ~~k~iiFDlDGTL~D~~~~~   28 (238)
T PRK10748          9 RISALTFDLDDTLYDNRPVI   28 (238)
T ss_pred             CceeEEEcCcccccCChHHH
Confidence            57999999999999986543

>COG4850 Uncharacterized conserved protein [Function unknown]

Probab=92.87  E-value=0.33  Score=38.66  Aligned_cols=73  Identities=19%  Similarity=0.190  Sum_probs=50.6

Q ss_pred             CCcEEEEeccCcccCC-------------------CccCccHHHHHHHHHHCC-CcEEEEeCCCCC-hHHHHHHHHhCCC
Q 033480           29 RFKAWLLDQFGVLHDG-------------------KKPYPGAISTLEMLATTG-AKMVVISNSSRR-ASTTIDKLKSLGF   87 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~-------------------~~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~-~~~~~~~L~~~gi   87 (118)
                      .-=+++-|+|.|+.+.                   -.++||+-.+.+.|.+.| .+++.+||++.. ...+.+.+..-++
T Consensus       160 a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~  239 (373)
T COG4850         160 AGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNF  239 (373)
T ss_pred             cceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCC
Confidence            3446889999988653                   146999999999999888 899999999743 3445555554443


Q ss_pred             CCc---------CCCceeehHHH
Q 033480           88 DPS---------LFAGAITSGEL  101 (118)
Q Consensus        88 ~~~---------~fd~iits~~v  101 (118)
                      +.-         .+|.++.|+..
T Consensus       240 P~GPl~L~~~g~~~~~i~~sga~  262 (373)
T COG4850         240 PYGPLLLRRWGGVLDNIIESGAA  262 (373)
T ss_pred             CCCchhHhhcCCcccccccchhh
Confidence            311         13666666654

>PRK11590 hypothetical protein; Provisional

Probab=92.80  E-value=0.14  Score=37.30  Aligned_cols=17  Identities=24%  Similarity=0.335  Sum_probs=14.1

Q ss_pred             CCcEEEEeccCcccCCC
Q 033480           29 RFKAWLLDQFGVLHDGK   45 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~   45 (118)
                      ..+.++||+||||+...
T Consensus         5 ~~k~~iFD~DGTL~~~d   21 (211)
T PRK11590          5 ERRVVFFDLDGTLHQQD   21 (211)
T ss_pred             cceEEEEecCCCCcccc
Confidence            56799999999999443

>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]

Probab=92.70  E-value=0.37  Score=39.91  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.0

Q ss_pred             CCcEEEEeccCcccCCCcc------------CccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDGKKP------------YPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~------------~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      +.+.+++|+||||...+.+            .-|+..+-.++-++||++.-+|+++
T Consensus       374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~  429 (580)
T COG5083         374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRS  429 (580)
T ss_pred             CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEeccc
Confidence            6789999999999886532            4678888888989999999999875

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=92.44  E-value=0.071  Score=37.25  Aligned_cols=18  Identities=33%  Similarity=0.431  Sum_probs=15.5

Q ss_pred             CcEEEEeccCcccCCCcc
Q 033480           30 FKAWLLDQFGVLHDGKKP   47 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~   47 (118)
                      ++.++||+||||++....
T Consensus         1 ~~~iiFD~DGTL~ds~~~   18 (185)
T TIGR02009         1 YKAVIFDMDGVIVDTAPL   18 (185)
T ss_pred             CCeEEEcCCCcccCChHH
Confidence            578999999999998654

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation

Probab=91.94  E-value=0.83  Score=29.45  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +.+.+++|+-|+-+-+..-+.-..++.++++++|..+.++--+    ..+.+.|+..|+..
T Consensus        40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~----~~v~~~l~~~gl~~   96 (109)
T cd07041          40 RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIR----PEVAQTLVELGIDL   96 (109)
T ss_pred             CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHhCCCh
Confidence            6789999999988888776677778888899999998888533    34778899999875

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=91.92  E-value=0.087  Score=37.86  Aligned_cols=18  Identities=22%  Similarity=0.274  Sum_probs=15.5

Q ss_pred             CcEEEEeccCcccCCCcc
Q 033480           30 FKAWLLDQFGVLHDGKKP   47 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~   47 (118)
                      ++.++||+||||.+....
T Consensus         1 ~k~viFD~DGTL~d~~~~   18 (224)
T TIGR02254         1 YKTLLFDLDDTILDFQAA   18 (224)
T ss_pred             CCEEEEcCcCcccccchH
Confidence            578999999999987654

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=91.91  E-value=0.084  Score=37.73  Aligned_cols=16  Identities=38%  Similarity=0.484  Sum_probs=13.4

Q ss_pred             cEEEEeccCcccCCCc
Q 033480           31 KAWLLDQFGVLHDGKK   46 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~~   46 (118)
                      ++++||+||||++...
T Consensus         1 ~~viFD~DGTLiDs~~   16 (197)
T TIGR01548         1 QALVLDMDGVMADVSQ   16 (197)
T ss_pred             CceEEecCceEEechH
Confidence            3689999999998754

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=91.12  E-value=1.1  Score=32.39  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=47.4

Q ss_pred             HHHhhcCCcEEEEeccCcccC--CCccCccHHHHHHHHHHC-C-CcEEEEeCCCCC-----hHHHHHHHH-hCCCCCc
Q 033480           23 HIAETRRFKAWLLDQFGVLHD--GKKPYPGAISTLEMLATT-G-AKMVVISNSSRR-----ASTTIDKLK-SLGFDPS   90 (118)
Q Consensus        23 ~~~~~~~~~~~~~D~DGtL~~--~~~~~pga~e~L~~Lk~~-G-i~v~I~TN~~r~-----~~~~~~~L~-~~gi~~~   90 (118)
                      +++....+|++++|=|.|+.-  +..+.|.-..-++++++. | ..++++||+...     .......|+ ..||++.
T Consensus        36 ~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl  113 (190)
T KOG2961|consen   36 EILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL  113 (190)
T ss_pred             chhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE
Confidence            343333799999999998864  445678888888888775 3 679999998532     123345554 4898865

>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]

Probab=90.71  E-value=1.4  Score=29.14  Aligned_cols=67  Identities=16%  Similarity=0.196  Sum_probs=49.2

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+.+.+...+.+.+++|+.|+=+-+.--.--...+++.+++.|..++++..++    .+.+.+...|+...
T Consensus        34 ~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p----~v~~~~~~~gl~~~  100 (117)
T COG1366          34 TLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQP----EVARTLELTGLDKS  100 (117)
T ss_pred             HHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCH----HHHHHHHHhCchhh
Confidence            33434443456669999999888777666666777888999999888887542    36788899998865

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=90.68  E-value=1.2  Score=35.45  Aligned_cols=90  Identities=13%  Similarity=0.056  Sum_probs=60.6

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCC-C--ccCccHHHHHHHHHHCCCcEEEEeCCCCC---hH---HHHHHHHhCCCCCc
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDG-K--KPYPGAISTLEMLATTGAKMVVISNSSRR---AS---TTIDKLKSLGFDPS   90 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~-~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~---~~---~~~~~L~~~gi~~~   90 (118)
                      .+...++ ...+++++=...+=.+. .  -..+...|.++.+++.|.++++++|...+   .+   .+.+.|..+|.   
T Consensus        18 ~l~~ai~-~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv---   93 (347)
T COG0826          18 DLKAAIA-AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV---   93 (347)
T ss_pred             HHHHHHH-cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC---
Confidence            3344444 23566766544322221 2  34577999999999999999999997522   12   34455555663   


Q ss_pred             CCCceeehHHHHHHHHHhccCCCcc
Q 033480           91 LFAGAITSGELTHQYLLRLIIASSV  115 (118)
Q Consensus        91 ~fd~iits~~v~~~~l~~~~~~~~v  115 (118)
                        |.++-++.....++++.+|.-++
T Consensus        94 --Daviv~Dpg~i~l~~e~~p~l~i  116 (347)
T COG0826          94 --DAVIVADPGLIMLARERGPDLPI  116 (347)
T ss_pred             --CEEEEcCHHHHHHHHHhCCCCcE
Confidence              78999999999999999977654

>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists

Probab=90.55  E-value=0.53  Score=30.69  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=46.4

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ++.+++|+.++-.-+..-+.-..++.+.++++|+.++++.-    ...+...|...|+...
T Consensus        48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~----~~~v~~~l~~~~~~~~  104 (117)
T PF01740_consen   48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGL----NPDVRRILERSGLIDF  104 (117)
T ss_dssp             SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESH----HHHHHHHHHHTTGHHH
T ss_pred             ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHcCCChh
Confidence            58999999998777777777888899999999999988852    2457788999997644

It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=90.36  E-value=0.26  Score=37.36  Aligned_cols=52  Identities=17%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             CCCccCccHHHHHHHHHHCCC-cEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           43 DGKKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi-~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      +..+..||..++|+.+++.|- -++|+|-+  +.-.+...|+++|+... |+.|+|
T Consensus        81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDa--NsfFIe~~Lea~~~~d~-F~~IfT  133 (256)
T KOG3120|consen   81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDA--NSFFIEEILEAAGIHDL-FSEIFT  133 (256)
T ss_pred             hcCCCCccHHHHHHHHHhCCCceEEEEecC--chhHHHHHHHHccHHHH-HHHHhc
Confidence            344668999999999999986 78999875  33567799999999887 677765

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=90.25  E-value=0.13  Score=41.93  Aligned_cols=30  Identities=23%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             CCcEEEEeccCcccCCCccC-ccHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPY-PGAISTLEML   58 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~-pga~e~L~~L   58 (118)
                      .+++++||+||||++....+ ....++++++
T Consensus       240 m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~  270 (459)
T PRK06698        240 MLQALIFDMDGTLFQTDKILELSLDDTFDHL  270 (459)
T ss_pred             hhhheeEccCCceecchhHHHHHHHHHHHHH
Confidence            47899999999999987653 3334455444

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=90.21  E-value=0.2  Score=35.48  Aligned_cols=31  Identities=29%  Similarity=0.437  Sum_probs=23.2

Q ss_pred             CcEEEEeccCcccCCCccC--ccHHHHHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGKKPY--PGAISTLEMLAT   60 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~--pga~e~L~~Lk~   60 (118)
                      ++.++||.||||+.+...+  ++..++++.+.+
T Consensus         1 i~~i~fDktGTLt~~~~~v~~~~~~~~~~~~~~   33 (215)
T PF00702_consen    1 IDAICFDKTGTLTQGKMSVAPPSNEAALAIAAA   33 (215)
T ss_dssp             ESEEEEECCTTTBESHHEEESCSHHHHHHHHHH
T ss_pred             CeEEEEecCCCcccCeEEEEeccHHHHHHHHHH
Confidence            4789999999999887666  666666555544

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional

Probab=89.90  E-value=1.1  Score=35.47  Aligned_cols=41  Identities=15%  Similarity=0.148  Sum_probs=33.2

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .|+..++++.++++|+.+.+.||+..-.....+.|...|+.
T Consensus        76 ~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~  116 (378)
T PRK05301         76 RKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLD  116 (378)
T ss_pred             chhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCC
Confidence            48889999999999999999999875455566778777754

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=89.89  E-value=0.11  Score=36.92  Aligned_cols=17  Identities=35%  Similarity=0.601  Sum_probs=14.3

Q ss_pred             CcEEEEeccCcccCCCc
Q 033480           30 FKAWLLDQFGVLHDGKK   46 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~   46 (118)
                      ++.++||+||||++...
T Consensus         1 ik~viFD~dgTLiD~~~   17 (198)
T TIGR01428         1 IKALVFDVYGTLFDVHS   17 (198)
T ss_pred             CcEEEEeCCCcCccHHH
Confidence            46899999999998654

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=89.86  E-value=0.76  Score=40.01  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=50.4

Q ss_pred             EEEEeccCc----ccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           32 AWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        32 ~~~~D~DGt----L~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .+++-.||.    +.-.+++-|++.++|++|+++|++++++|+=.+  ......-+.+||+.+ +-++...+.
T Consensus       519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~--~~A~~iA~~lGId~v-~AellPedK  588 (713)
T COG2217         519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNR--RTAEAIAKELGIDEV-RAELLPEDK  588 (713)
T ss_pred             EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcChHhh-eccCCcHHH
Confidence            588888884    345778899999999999999999999997433  345566688999877 455554443

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=89.74  E-value=0.2  Score=35.21  Aligned_cols=16  Identities=19%  Similarity=0.360  Sum_probs=13.2

Q ss_pred             cEEEEeccCcccCCCc
Q 033480           31 KAWLLDQFGVLHDGKK   46 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~~   46 (118)
                      ..++||+||||++...
T Consensus         1 ~~viFDlDGTL~ds~~   16 (184)
T TIGR01993         1 DVWFFDLDNTLYPHSA   16 (184)
T ss_pred             CeEEEeCCCCCCCCcc
Confidence            3689999999998753

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=89.38  E-value=0.9  Score=39.29  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=46.5

Q ss_pred             cCCcEEEEeccC----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           28 RRFKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        28 ~~~~~~~~D~DG----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ...+.+++-.|+    .+.-.+.+-|++.+.+++|++.|++++++|+-.  ...+....+.+|++..
T Consensus       424 ~G~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~--~~ta~~iA~~lGI~~v  488 (675)
T TIGR01497       424 QGGTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDN--RLTAAAIAAEAGVDDF  488 (675)
T ss_pred             CCCeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHcCCCEE
Confidence            356777765554    445566788999999999999999999999753  3446677788998755

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E

Probab=89.37  E-value=1.3  Score=34.70  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .|+..++++.+++.|+.+.+.||+..-..+..+.|...|+.
T Consensus        67 ~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~  107 (358)
T TIGR02109        67 RPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLD  107 (358)
T ss_pred             cccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCC
Confidence            48899999999999999999999865445566777777654

This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=88.98  E-value=0.35  Score=34.81  Aligned_cols=20  Identities=35%  Similarity=0.253  Sum_probs=16.8

Q ss_pred             cCCcEEEEeccCcccCCCcc
Q 033480           28 RRFKAWLLDQFGVLHDGKKP   47 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~   47 (118)
                      +.++.++||+||||++....
T Consensus         2 ~~~k~i~FD~d~TL~d~~~~   21 (229)
T COG1011           2 MMIKAILFDLDGTLLDFDSA   21 (229)
T ss_pred             CceeEEEEecCCcccccchH
Confidence            47899999999999987543

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=88.79  E-value=0.28  Score=35.22  Aligned_cols=16  Identities=38%  Similarity=0.353  Sum_probs=13.9

Q ss_pred             CcEEEEeccCcccCCC
Q 033480           30 FKAWLLDQFGVLHDGK   45 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~   45 (118)
                      ++.++||+||||....
T Consensus         2 ik~viFDldGtL~d~~   17 (211)
T TIGR02247         2 IKAVIFDFGGVLLPSP   17 (211)
T ss_pred             ceEEEEecCCceecCH
Confidence            5789999999999863

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=88.52  E-value=0.82  Score=39.54  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=50.3

Q ss_pred             CCcEEEEeccC----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           29 RFKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        29 ~~~~~~~D~DG----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      ..+.++.-.|+    .+.-.+.+-|++.+.+++|++.|+++.++|+-  +.......-+.+|++.. |.++ +.++ -.+
T Consensus       420 G~~~l~v~~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGD--n~~TA~aIA~elGI~~v-~A~~-~Ped-K~~  494 (673)
T PRK14010        420 GGTPLVVLEDNEILGVIYLKDVIKDGLVERFRELREMGIETVMCTGD--NELTAATIAKEAGVDRF-VAEC-KPED-KIN  494 (673)
T ss_pred             CCeEEEEEECCEEEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCceE-EcCC-CHHH-HHH
Confidence            45655543343    44556678899999999999999999999974  33445667788999765 4443 3333 334


Q ss_pred             HHHh
Q 033480          105 YLLR  108 (118)
Q Consensus       105 ~l~~  108 (118)
                      ++++
T Consensus       495 iV~~  498 (673)
T PRK14010        495 VIRE  498 (673)
T ss_pred             HHHH
Confidence            4443

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=88.24  E-value=1.7  Score=38.80  Aligned_cols=59  Identities=15%  Similarity=0.156  Sum_probs=42.5

Q ss_pred             CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        39 GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      |.+.-.+++-|++.++|++|++.|+++.++|+-.  ...+...-+.+|+.... ..++++.+
T Consensus       572 Gli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~--~~tA~~iA~~~GI~~~~-~~vi~G~~  630 (941)
T TIGR01517       572 GVVGIKDPLRPGVREAVQECQRAGITVRMVTGDN--IDTAKAIARNCGILTFG-GLAMEGKE  630 (941)
T ss_pred             EEeeccCCCchhHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHcCCCCCC-ceEeeHHH
Confidence            3444456788999999999999999999999743  34456677889997532 34554443

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=87.86  E-value=0.91  Score=33.65  Aligned_cols=66  Identities=20%  Similarity=0.150  Sum_probs=42.1

Q ss_pred             chhhHHHHHhhcCCcEEEE-eccCcccCCCccC--cc-HHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           17 TLNGLRHIAETRRFKAWLL-DQFGVLHDGKKPY--PG-AISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~-D~DGtL~~~~~~~--pg-a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      +.+.+-+.+.  +.+.++- .-.|+-..+.+|.  ++ +.++++.+++.|+.+++-||+..+.+.+...+..
T Consensus        20 t~eel~~~~~--~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~   89 (213)
T PRK10076         20 TLDALEREVM--KDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL   89 (213)
T ss_pred             CHHHHHHHHH--hhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh
Confidence            3444444444  3444332 2357777777752  43 7899999999999999999986544444444443

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=87.83  E-value=1  Score=39.99  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=36.0

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      .+++.|++.++|+.|++.|+++.++|+..  ........+.+|+..
T Consensus       535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~--~~tA~~ia~~~gi~~  578 (917)
T TIGR01116       535 LDPPRPEVADAIEKCRTAGIRVIMITGDN--KETAEAICRRIGIFS  578 (917)
T ss_pred             eCCCchhHHHHHHHHHHCCCEEEEecCCC--HHHHHHHHHHcCCCC
Confidence            45678999999999999999999999753  344667778899864

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=87.70  E-value=1.7  Score=37.60  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=51.9

Q ss_pred             cCCcEEEEeccC----cccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480           28 RRFKAWLLDQFG----VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (118)
Q Consensus        28 ~~~~~~~~D~DG----tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~  103 (118)
                      ...+.+.+-.|+    .+.-.+.+-||+.|.+++|++.|+++.++|+-.  .......-+.+|++.. |.+ .+.++ -.
T Consensus       423 ~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn--~~TA~aIA~elGId~v-~A~-~~Ped-K~  497 (679)
T PRK01122        423 KGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDN--PLTAAAIAAEAGVDDF-LAE-ATPED-KL  497 (679)
T ss_pred             CCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHcCCcEE-Ecc-CCHHH-HH
Confidence            356777765554    445566788999999999999999999999742  2345566788999765 433 33333 33


Q ss_pred             HHHHh
Q 033480          104 QYLLR  108 (118)
Q Consensus       104 ~~l~~  108 (118)
                      +++++
T Consensus       498 ~iV~~  502 (679)
T PRK01122        498 ALIRQ  502 (679)
T ss_pred             HHHHH
Confidence            44444

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=87.68  E-value=0.19  Score=34.89  Aligned_cols=15  Identities=33%  Similarity=0.512  Sum_probs=12.6

Q ss_pred             EEEEeccCcccCCCc
Q 033480           32 AWLLDQFGVLHDGKK   46 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~   46 (118)
                      +++||+||||+....
T Consensus         1 ~viFD~DGTL~D~~~   15 (175)
T TIGR01493         1 AMVFDVYGTLVDVHG   15 (175)
T ss_pred             CeEEecCCcCcccHH
Confidence            479999999998764

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors

Probab=87.49  E-value=2  Score=27.39  Aligned_cols=57  Identities=14%  Similarity=0.093  Sum_probs=46.2

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      ..+.+++|+.++-+-+..-+--..++.++++++|..+.++.-+    ..+.+.|+..|+..
T Consensus        38 ~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~   94 (100)
T cd06844          38 AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTGIS----PAVRITLTESGLDK   94 (100)
T ss_pred             CCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCC----HHHHHHHHHhCchh
Confidence            4789999999988888877777888899999999998888532    34678888888753

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=87.44  E-value=0.25  Score=34.40  Aligned_cols=16  Identities=31%  Similarity=0.355  Sum_probs=13.4

Q ss_pred             EEEEeccCcccCCCcc
Q 033480           32 AWLLDQFGVLHDGKKP   47 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~~   47 (118)
                      +++||+||||++....
T Consensus         1 ~iiFD~DGTL~ds~~~   16 (185)
T TIGR01990         1 AVIFDLDGVITDTAEY   16 (185)
T ss_pred             CeEEcCCCccccChHH
Confidence            4799999999987654

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR00377 ant_ant_sig anti-anti-sigma factor

Probab=87.40  E-value=2.5  Score=26.85  Aligned_cols=58  Identities=14%  Similarity=0.096  Sum_probs=45.7

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ..+.+++|+.++-.-+..-+.-..++.++++++|..+.++.-+    ..+.+.++..|+...
T Consensus        42 ~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~~----~~~~~~l~~~~l~~~   99 (108)
T TIGR00377        42 GPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSVS----PRVARLLDITGLLRI   99 (108)
T ss_pred             CCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeCC----HHHHHHHHHhChhhe
Confidence            6789999999988877776777777888889999988777533    346788888888754

This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=87.04  E-value=1.2  Score=40.07  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=34.9

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++-|++.++|++++++|+++.++|+.  +...+....+.+|+.
T Consensus       567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd--~~~ta~~ia~~~gi~  608 (997)
T TIGR01106       567 DPPRAAVPDAVGKCRSAGIKVIMVTGD--HPITAKAIAKGVGII  608 (997)
T ss_pred             CCChHHHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCC
Confidence            466799999999999999999999975  444566777888884

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=86.75  E-value=1.6  Score=38.88  Aligned_cols=54  Identities=11%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      -.+++-|++.++|++|++.|+++.++|+-  +.......-+.+|+..   +.++++.+.
T Consensus       547 ~~Dp~R~~a~~aI~~l~~aGI~v~miTGD--~~~tA~~IA~~lGI~~---~~v~~G~el  600 (902)
T PRK10517        547 FLDPPKETTAPALKALKASGVTVKILTGD--SELVAAKVCHEVGLDA---GEVLIGSDI  600 (902)
T ss_pred             hhCcchhhHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHcCCCc---cCceeHHHH
Confidence            34577899999999999999999999974  2344566778899952   456665543

>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation

Probab=86.70  E-value=2.7  Score=25.97  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+.+++|+.++=.-+.....-..++.++++++|..+.+..-+    ..+.+.++..|+...
T Consensus        38 ~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~~----~~~~~~l~~~gl~~~   94 (99)
T cd07043          38 PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNVS----PAVRRVLELTGLDRL   94 (99)
T ss_pred             CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcCC----HHHHHHHHHhCccee
Confidence            589999999988888777777888899999999887776432    357788899998754

Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.

>COG4229 Predicted enolase-phosphatase [Energy production and conversion]

Probab=86.58  E-value=0.76  Score=34.06  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             CcEEEEeccCcccCC--------CccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           30 FKAWLLDQFGVLHDG--------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~--------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      +...+=.+.|-+|..        .+++|.+.++|++.++.|++++|-|+++
T Consensus        79 K~t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGS  129 (229)
T COG4229          79 KDTPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGS  129 (229)
T ss_pred             ccchHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCC
Confidence            333444466766542        3679999999999999999999999876

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=86.54  E-value=0.52  Score=34.58  Aligned_cols=19  Identities=21%  Similarity=0.188  Sum_probs=16.0

Q ss_pred             CCcEEEEeccCcccCCCcc
Q 033480           29 RFKAWLLDQFGVLHDGKKP   47 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~   47 (118)
                      ..+.++||+||||++.+..
T Consensus         4 ~~~la~FDfDgTLt~~ds~   22 (210)
T TIGR01545         4 AKRIIFFDLDGTLHQQDMF   22 (210)
T ss_pred             cCcEEEEcCCCCCccCccH
Confidence            4678999999999998743

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>PRK15452 putative protease; Provisional

Probab=86.27  E-value=3.1  Score=34.27  Aligned_cols=84  Identities=13%  Similarity=-0.033  Sum_probs=55.2

Q ss_pred             cCCcEEEEeccCcccCC---CccCccHHHHHHHHHHCCCcEEEEeCCCCChH---HHHHHHH---hCCCCCcCCCceeeh
Q 033480           28 RRFKAWLLDQFGVLHDG---KKPYPGAISTLEMLATTGAKMVVISNSSRRAS---TTIDKLK---SLGFDPSLFAGAITS   98 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~---~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~---~~~~~L~---~~gi~~~~fd~iits   98 (118)
                      ...+.+++=.++=-++.   .--.+...++++..+++|.++++++|.-.+..   .+.+.++   .+|     .|.++-+
T Consensus        22 ~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g-----vDgvIV~   96 (443)
T PRK15452         22 YGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK-----PDALIMS   96 (443)
T ss_pred             CCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC-----CCEEEEc
Confidence            36777777443311111   11236688899999999999999999753322   2333333   444     3788999


Q ss_pred             HHHHHHHHHhccCCCccc
Q 033480           99 GELTHQYLLRLIIASSVI  116 (118)
Q Consensus        99 ~~v~~~~l~~~~~~~~v~  116 (118)
                      +-....++++.+|+.+|.
T Consensus        97 d~G~l~~~ke~~p~l~ih  114 (443)
T PRK15452         97 DPGLIMMVREHFPEMPIH  114 (443)
T ss_pred             CHHHHHHHHHhCCCCeEE
Confidence            988889999988776653

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=86.07  E-value=0.27  Score=33.37  Aligned_cols=15  Identities=40%  Similarity=0.344  Sum_probs=12.6

Q ss_pred             EEEEeccCcccCCCc
Q 033480           32 AWLLDQFGVLHDGKK   46 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~   46 (118)
                      .++||+||||++...
T Consensus         1 ~iifD~DGTL~d~~~   15 (154)
T TIGR01549         1 AILFDIDGTLVDSSF   15 (154)
T ss_pred             CeEecCCCcccccHH
Confidence            479999999999753

HAD subfamilies caused by an overly broad single model.

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=85.94  E-value=0.31  Score=34.77  Aligned_cols=14  Identities=36%  Similarity=0.351  Sum_probs=11.7

Q ss_pred             EEEeccCcccCCCc
Q 033480           33 WLLDQFGVLHDGKK   46 (118)
Q Consensus        33 ~~~D~DGtL~~~~~   46 (118)
                      ++||+||||.+...
T Consensus         1 viFD~DGTL~Ds~~   14 (213)
T TIGR01449         1 VLFDLDGTLVDSAP   14 (213)
T ss_pred             CeecCCCccccCHH
Confidence            58999999998654

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>COG0731 Fe-S oxidoreductases [Energy production and conversion]

Probab=85.91  E-value=1.7  Score=34.03  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=34.1

Q ss_pred             cCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++|...|+|+.+++.| ++++|+||++.     .+.++.+..    +|.+.-|-++
T Consensus        93 Ly~~L~elI~~~k~~g~~~tflvTNgsl-----pdv~~~L~~----~dql~~sLdA  139 (296)
T COG0731          93 LYPNLGELIEEIKKRGKKTTFLVTNGSL-----PDVLEELKL----PDQLYVSLDA  139 (296)
T ss_pred             cccCHHHHHHHHHhcCCceEEEEeCCCh-----HHHHHHhcc----CCEEEEEecc
Confidence            5799999999999999 79999999865     244555542    2556655554

>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=85.49  E-value=1  Score=33.31  Aligned_cols=51  Identities=24%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCCcc--CccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~--~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      ..+++++  .++..-....|+.+.|.+|  .++..++++.|+++|+++.+=||.+
T Consensus        57 ~~~~I~~--~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngt  109 (212)
T COG0602          57 SADEILA--DIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGT  109 (212)
T ss_pred             CHHHHHH--HHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCC
Confidence            4445555  4444333333777777776  4699999999999999999999986

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.40  E-value=8.6  Score=33.11  Aligned_cols=70  Identities=14%  Similarity=0.048  Sum_probs=45.5

Q ss_pred             cEEEEeccCccc-CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           31 KAWLLDQFGVLH-DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        31 ~~~~~D~DGtL~-~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      -..++|+||-++ -.+.---.--+.++.+.+.|.|++|+|.-+.....+...-..||-..|.-+.-++.++
T Consensus       256 giAvldldGevl~~~S~r~~~~~eVve~I~~lG~PvvVAtDVtp~P~~V~KiAasf~A~ly~P~~dLsveE  326 (652)
T COG2433         256 GIAVLDLDGEVLDLESRRGIDRSEVVEFISELGKPVVVATDVTPAPETVKKIAASFNAVLYTPDRDLSVEE  326 (652)
T ss_pred             eEEEEecCCcEEeeeccccCCHHHHHHHHHHcCCceEEEccCCCChHHHHHHHHHcCCcccCCcccCCHHH
Confidence            356799999554 3443333445667777788999999998766556666666668876553234444433

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=85.16  E-value=1.9  Score=37.56  Aligned_cols=59  Identities=17%  Similarity=0.292  Sum_probs=43.6

Q ss_pred             cCCcEEEEec---------cCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQ---------FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~---------DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      ..++.+.+=.         =|.+.-.+++-|++.++|++|++.|+++.++|+-..  ......-+.+|+.
T Consensus       415 ~G~rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~--~tA~~IA~~lGI~  482 (755)
T TIGR01647       415 RGYRALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHL--AIAKETARRLGLG  482 (755)
T ss_pred             CCCEEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCCC
Confidence            3566666543         234445567889999999999999999999997533  3456677889985

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=84.57  E-value=0.4  Score=33.11  Aligned_cols=15  Identities=47%  Similarity=0.468  Sum_probs=12.5

Q ss_pred             EEEEeccCcccCCCc
Q 033480           32 AWLLDQFGVLHDGKK   46 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~   46 (118)
                      +++||+||||++...
T Consensus         1 ~vlFDlDgtLv~~~~   15 (183)
T TIGR01509         1 AILFDLDGVLVDTSS   15 (183)
T ss_pred             CeeeccCCceechHH
Confidence            479999999998743

HAD subfamilies caused by an overly broad single model.

>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus

Probab=84.40  E-value=2.3  Score=32.69  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             CCcEEEEecc--------------CcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480           29 RFKAWLLDQF--------------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNS   71 (118)
Q Consensus        29 ~~~~~~~D~D--------------GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~   71 (118)
                      +...+.+|+|              +...-+.+.+|+..+++++|+++|+++++...-
T Consensus        40 P~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P   96 (292)
T cd06595          40 PLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP   96 (292)
T ss_pred             CccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence            4788999875              134444567999999999999999999887753

Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=84.31  E-value=0.41  Score=34.23  Aligned_cols=15  Identities=33%  Similarity=0.255  Sum_probs=12.4

Q ss_pred             EEEeccCcccCCCcc
Q 033480           33 WLLDQFGVLHDGKKP   47 (118)
Q Consensus        33 ~~~D~DGtL~~~~~~   47 (118)
                      ++||+||||++....
T Consensus         1 iiFDlDGTL~Ds~~~   15 (205)
T TIGR01454         1 VVFDLDGVLVDSFAV   15 (205)
T ss_pred             CeecCcCccccCHHH
Confidence            589999999998543

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=83.82  E-value=0.59  Score=33.17  Aligned_cols=13  Identities=23%  Similarity=0.192  Sum_probs=11.8

Q ss_pred             EEEeccCcccCCC
Q 033480           33 WLLDQFGVLHDGK   45 (118)
Q Consensus        33 ~~~D~DGtL~~~~   45 (118)
                      ++||+||||+.+.
T Consensus         2 a~FD~DgTL~~~~   14 (202)
T TIGR01490         2 AFFDFDGTLTAKD   14 (202)
T ss_pred             eEEccCCCCCCCc
Confidence            7999999999875

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate

Probab=83.81  E-value=2.4  Score=32.99  Aligned_cols=42  Identities=14%  Similarity=0.220  Sum_probs=33.6

Q ss_pred             CCcEEEEecc-----C--cccCCCccCccHHHHHHHHHHCCCcEEEEeC
Q 033480           29 RFKAWLLDQF-----G--VLHDGKKPYPGAISTLEMLATTGAKMVVISN   70 (118)
Q Consensus        29 ~~~~~~~D~D-----G--tL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN   70 (118)
                      +...+.+|+|     |  .+.-+.+.+|...+++++|+++|+++++..+
T Consensus        39 P~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~   87 (319)
T cd06591          39 PLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIW   87 (319)
T ss_pred             CccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEec
Confidence            5788999975     3  4444556789999999999999999887654

XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=83.78  E-value=3.5  Score=29.14  Aligned_cols=65  Identities=18%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             ccchhhHHHHHhhcCCcEEEEeccCcccCCCcc--CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCC
Q 033480           15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKP--YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLG   86 (118)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~--~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~g   86 (118)
                      ..+.+.+.+.+.  .....   +.++.+.+.+|  .+...++++.+++.|+.+.+.||... . ...+.+...|
T Consensus        46 ~~~~~~i~~~i~--~~~~~---~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~-~-~~l~~l~~~g  112 (191)
T TIGR02495        46 EIEVEFLLEFLR--SRQGL---IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN-P-RVLEELLEEG  112 (191)
T ss_pred             cCCHHHHHHHHH--HhcCC---CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC-H-HHHHHHHhcC
Confidence            455566656655  22111   23333445544  36688999999999999999999863 2 2334444445

This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=83.69  E-value=2.5  Score=37.63  Aligned_cols=54  Identities=17%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        42 ~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .-.+++-|++.++|++|++.|+++.++|+-  +.......-+.+|+..   +.++++.+
T Consensus       546 ~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD--~~~tA~aIA~~lGI~~---~~vi~G~e  599 (903)
T PRK15122        546 TFLDPPKESAAPAIAALRENGVAVKVLTGD--NPIVTAKICREVGLEP---GEPLLGTE  599 (903)
T ss_pred             eccCccHHHHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCCC---CCccchHh
Confidence            334567899999999999999999999974  3334566778899962   34555444

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=82.53  E-value=0.82  Score=31.84  Aligned_cols=13  Identities=31%  Similarity=0.404  Sum_probs=11.9

Q ss_pred             EEEeccCcccCCC
Q 033480           33 WLLDQFGVLHDGK   45 (118)
Q Consensus        33 ~~~D~DGtL~~~~   45 (118)
                      ++||+||||+.+.
T Consensus         1 v~fD~DGTL~~~~   13 (192)
T PF12710_consen    1 VIFDFDGTLTDSD   13 (192)
T ss_dssp             EEEESBTTTBSSH
T ss_pred             eEEecCcCeecCC
Confidence            6899999999887

>PRK11660 putative transporter; Provisional

Probab=82.33  E-value=3.9  Score=34.42  Aligned_cols=76  Identities=13%  Similarity=0.013  Sum_probs=54.5

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcC-CCceeehHHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL-FAGAITSGELTHQYLL  107 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~-fd~iits~~v~~~~l~  107 (118)
                      +.+.+++|+.++-.-+..-..-..++.+++++ |.+++++.=+    ..+.+.+++.|+.... .+.++.+.+.+.+..+
T Consensus       490 ~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~----~~v~~~l~~~gl~~~~~~~~if~~~~~Al~~~~  564 (568)
T PRK11660        490 GKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQ----FQPLRTLARAGIQPIPGRLAFYPTLREALADLL  564 (568)
T ss_pred             CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCC----hHHHHHHHHCCChhhcCcccccCCHHHHHHHHH
Confidence            68899999999888787778888889999999 9998887522    2467888887775410 1356655555555555


Q ss_pred             hc
Q 033480          108 RL  109 (118)
Q Consensus       108 ~~  109 (118)
                      ++
T Consensus       565 ~~  566 (568)
T PRK11660        565 RN  566 (568)
T ss_pred             hh
Confidence            55

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=82.28  E-value=0.66  Score=32.01  Aligned_cols=14  Identities=21%  Similarity=0.202  Sum_probs=11.8

Q ss_pred             EEEeccCcccCCCc
Q 033480           33 WLLDQFGVLHDGKK   46 (118)
Q Consensus        33 ~~~D~DGtL~~~~~   46 (118)
                      ++||+||||.....
T Consensus         2 ~~fD~DgTl~~~~s   15 (177)
T TIGR01488         2 AIFDFDGTLTRQDS   15 (177)
T ss_pred             EEecCccccccchh
Confidence            79999999997653

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY

Probab=81.53  E-value=6.2  Score=30.71  Aligned_cols=43  Identities=30%  Similarity=0.516  Sum_probs=33.9

Q ss_pred             CCcEEEEecc-----------CcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480           29 RFKAWLLDQF-----------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNS   71 (118)
Q Consensus        29 ~~~~~~~D~D-----------GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~   71 (118)
                      +...+.+|.|           |...-+.+.+|...+++++|+++|+++++..+-
T Consensus        39 P~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P   92 (317)
T cd06598          39 PLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEP   92 (317)
T ss_pred             CceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcC
Confidence            4778888854           345555667999999999999999999887763

CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=81.51  E-value=5.3  Score=36.40  Aligned_cols=70  Identities=16%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             CcEEE--EeccCcccCCCccCccHHHHHHHHHH----CCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480           30 FKAWL--LDQFGVLHDGKKPYPGAISTLEMLAT----TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (118)
Q Consensus        30 ~~~~~--~D~DGtL~~~~~~~pga~e~L~~Lk~----~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~  103 (118)
                      .+.++  +|+|+|  .  ...+...++++.+++    ..+.++++|+  |+...+.+.|+..+++...||.+|++.....
T Consensus       770 ~~~~via~D~d~~--~--~~~~~l~~~~~~~~~~~~~~~igfv~aTG--R~l~~~~~~l~~~~lp~~~PD~lI~~vGTeI  843 (1050)
T TIGR02468       770 KRLFVIAVDCYDD--K--DLLQIIKNIFEAVRKERMEGSSGFILSTS--MTISEIQSFLKSGGLNPTDFDALICNSGSEL  843 (1050)
T ss_pred             ceEEEEEeccCCC--C--ChHHHHHHHHHHHhccccCCceEEEEEcC--CCHHHHHHHHHhCCCCCCCCCEEEeCCCcce
Confidence            45555  799998  2  234455666777752    2356678876  4666788999999998422699887766443


Q ss_pred             HH
Q 033480          104 QY  105 (118)
Q Consensus       104 ~~  105 (118)
                      -|
T Consensus       844 yy  845 (1050)
T TIGR02468       844 YY  845 (1050)
T ss_pred             ec
Confidence            33

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=81.48  E-value=2.9  Score=37.05  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      -.+++-|++.++|++|++.|+++.++|+-  +.......-+.+|+.
T Consensus       512 l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD--~~~tA~aIA~~lGI~  555 (867)
T TIGR01524       512 FLDPPKESTKEAIAALFKNGINVKVLTGD--NEIVTARICQEVGID  555 (867)
T ss_pred             eeCCCchhHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHcCCC
Confidence            34577899999999999999999999974  334456677889996

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=81.32  E-value=1  Score=31.53  Aligned_cols=53  Identities=17%  Similarity=0.146  Sum_probs=37.5

Q ss_pred             ccchhhHHHHHhhcCCcEEEEeccCcccCCCccC-ccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~-pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      ..+.+.+.+.+.  +...   .+.|+...|.+.. +...++++.+++.|+++.+-||..
T Consensus        45 ~lt~eel~~~I~--~~~~---~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~   98 (147)
T TIGR02826        45 KLTPEYLTKTLD--KYRS---LISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLE   98 (147)
T ss_pred             CCCHHHHHHHHH--HhCC---CCCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            355566666666  4332   2468666666644 668899999999999999999854

Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.

>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=80.53  E-value=1.7  Score=35.36  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=24.0

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCC
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRR   74 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~   74 (118)
                      -|....++++|+++|.+++++||++.+
T Consensus       242 ~~ql~~fl~kL~~~GKklFLiTNSPys  268 (510)
T KOG2470|consen  242 NPQLLAFLRKLKDHGKKLFLITNSPYS  268 (510)
T ss_pred             cHHHHHHHHHHHHhcCcEEEEeCCchh
Confidence            467888999999999999999999765

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=80.01  E-value=4.5  Score=30.69  Aligned_cols=40  Identities=23%  Similarity=0.397  Sum_probs=32.2

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHHHHhCCCC
Q 033480           49 PGAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGFD   88 (118)
Q Consensus        49 pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~L~~~gi~   88 (118)
                      +.+.++|+.|+++|+++.-+|..+.. .....+.|+.+|++
T Consensus        84 ~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~  124 (252)
T PF11019_consen   84 SDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID  124 (252)
T ss_pred             hhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC
Confidence            45666899999999999999988733 34567888999987

The function is not known.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
2oyc_A	306	Crystal Structure Of Human Pyridoxal Phosphate Phos		5e-06
2cfs_A	298	Crystal Structure Of Human Pyridoxal 5'-Phosphate P		5e-06
2cfr_A	298	Crystal Structure Of Human Pyridoxal 5'-Phosphate P		5e-06

>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 20  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88  D----PSLFAGAITSGELTHQYL 106
                  LF+ A+ +  L  Q L
Sbjct: 80  GGLRAEQLFSSALCAARLLRQRL 102

>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate Phosphatase Length = 298

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 20  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88  D----PSLFAGAITSGELTHQYL 106
                  LF+ A+ +  L  Q L
Sbjct: 80  GGLRAEQLFSSALCAARLLRQRL 102

>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate Phosphatase Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
           R +  L D  GVL +G++  PGA   LE LA  G   + +SN+SRRA   +  +   LGF
Sbjct: 20  RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88  D----PSLFAGAITSGELTHQYL 106
                  LF+ A+ +  L  Q L
Sbjct: 80  GGLRAEQLFSSALCAARLLRQRL 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	2e-13
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	1e-11
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	4e-11
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	5e-11
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	6e-11
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	2e-10
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	2e-10
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	2e-10
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	5e-10
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	1e-09
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	1e-09
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	8e-09
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	2e-07
2zg6_A	220	Putative uncharacterized protein ST2620, probable	3e-07
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	5e-07
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	5e-07
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	6e-07
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	6e-07
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	7e-07
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	3e-06
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	3e-06
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	9e-06
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	3e-05
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	3e-05
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	4e-05
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	4e-05
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	7e-05
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	1e-04
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	2e-04
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	2e-04
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	3e-04
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	4e-04
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	7e-04
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	7e-04
1te2_A	226	Putative phosphatase; structural genomics, phospha	8e-04

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} Length = 284

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 17  TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRA 75
            +   + +    ++K    D FGVL       PG  +T + L   G    +++N +SR  
Sbjct: 3   QIESFKSLLP--KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSP 60

Query: 76  STTIDKLKSLGFDPSLFAGAITSGELTHQYL 106
               D    LG         I+SG +T +Y+
Sbjct: 61  EQLADSYHKLGLFSITADKIISSGMITKEYI 91

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A Length = 259

 Score = 58.3 bits (142), Expect = 1e-11
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 25  AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLK 83
           A  R  KA L+D  G LH      PGA   L+ L  T   +  ++N +       +++LK
Sbjct: 2   AARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLK 61

Query: 84  SLGFDPSLFAGA---ITSGELTHQYL 106
            L F+           TS       +
Sbjct: 62  KLEFE----ISEDEIFTSLTAARNLI 83

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A Length = 264

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 27  TRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSL 85
           +  +K +L+D  G ++ GK   P     +E L   G   ++++N ++R   +  + L+  
Sbjct: 2   SLAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGF 61

Query: 86  GFDPSLFAGA---ITSGELTHQYLLRLIIASSV 115
             +           T+   T  Y+  +    + 
Sbjct: 62  NVE----TPLETIYTATMATVDYMNDMNRGKTA 90

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} Length = 266

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
           + +K +L+D  G +++G +    A   +  L   G   + ++N SSR      DKL S  
Sbjct: 4   KTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFD 63

Query: 87  FDPSLFAGA---ITSGELTHQYLLRLIIASSV 115
                 A      T+   T Q++ +    +SV
Sbjct: 64  IP----ATEEQVFTTSMATAQHIAQQKKDASV 91

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} Length = 268

 Score = 56.4 bits (137), Expect = 6e-11
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
              K +++D  GV+     P P  +  ++ L   G K++ +SN S+R     +++L+S G
Sbjct: 6   PDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFG 65

Query: 87  FDPSLFAGA---ITSGELTHQYLLRLIIASSV 115
            +     G    + +   T +++ R    + V
Sbjct: 66  LE----VGEDEILVATYATARFIAREKPNAKV 93

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 Length = 250

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFD 88
            K  + D  GVL       PGA   L  +   G  +V+++N  S+      ++  + G D
Sbjct: 3   IKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVD 62

Query: 89  PSLFAGA---ITSGELTHQYL 106
                      TS   T  +L
Sbjct: 63  ----VPDSVFYTSAMATADFL 79

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* Length = 306

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
            R +  L D  GVL +G++  PGA   LE LA  G   + +SN S R       +   LG
Sbjct: 19  GRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLG 78

Query: 87  FDPSLFAGAITSGELTHQYL 106
           F         +S     + L
Sbjct: 79  FGGLRAEQLFSSALCAARLL 98

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A* Length = 271

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLG 86
            + + ++LD  G  +      PG++  LE L     + V  +N SS  A   + KL+++G
Sbjct: 15  DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMG 74

Query: 87  FDPSLFAGA---ITSGELTHQYLLRLIIASSV 115
            D          +TSGE+T +++L+      +
Sbjct: 75  VD----VPDDAVVTSGEITAEHMLKRFGRCRI 102

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} Length = 263

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 31  KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFDP 89
            A + D  GVL+ G +  PG    +E L   G     ++N S++      +KL  +G D 
Sbjct: 2   VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGID- 60

Query: 90  SLFAGA---ITSGELTHQYLLRLIIASSV 115
                +   ITSG  T  Y+ + +    +
Sbjct: 61  ---VSSSIIITSGLATRLYMSKHLDPGKI 86

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens} Length = 271

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 28  RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKL 82
              +  LLD  GVL+     G     G++  +  L  +  K+   +N S+   +  + +L
Sbjct: 10  AGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAELVGQL 69

Query: 83  KSLGFDPSLFAGA---ITSGELTHQYL 106
           + LGFD                  Q L
Sbjct: 70  QRLGFD----ISEQEVTAPAPAACQIL 92

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A* Length = 352

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRAS 76
          + G R    T +  A+  D  GVL  GKKP  GA   L++L       ++++N       
Sbjct: 1  MIGKRFFQTTSKKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSER 60

Query: 77 TTIDKL-KSLGFD 88
             + +   L  D
Sbjct: 61 ARTEFISSKLDVD 73

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14 Length = 264

 Score = 50.6 bits (122), Expect = 8e-09
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 27  TRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKL-KS 84
           +  ++ +L+D  G ++ GK+P P     +E L       + ++N +++   T   +L   
Sbjct: 2   SLDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANE 61

Query: 85  LGFDPSLFAGA---ITSGELTHQYLLRLIIASSV 115
                     A    T+   T  Y+        V
Sbjct: 62  FDIH----VPASLVYTATLATIDYMKEANRGKKV 91

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} Length = 189

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 13  HLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-S 71
           H+   +    +     R+    LD +  +         A  TLE +   G K  ++SN +
Sbjct: 5   HVIWDMGETLNTVPNTRYDHHPLDTYPEV----VLRKNAKETLEKVKQLGFKQAILSNTA 60

Query: 72  SRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
           +         L + G     F     S   
Sbjct: 61  TSDTEVIKRVLTNFGIID-YFDFIYASNSE 89

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Length = 220

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 16/105 (15%)

Query: 8   QSNDPHLFQTLNGLRHIAETRRFKAWL-----------LDQFGVLHDGKKPYPGAISTLE 56
           ++     +   +GL H+ + + F   L           L +  +       Y   +  LE
Sbjct: 47  KAMGMINYPDEDGLEHV-DPKDFLYILGIYPSERLVKELKEADIRDGEAFLYDDTLEFLE 105

Query: 57  MLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
            L + G K+ ++SN+S R       L+        F     S E+
Sbjct: 106 GLKSNGYKLALVSNASPR---VKTLLEKFDLKK-YFDALALSYEI 146

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} Length = 235

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 32  AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFDPS 90
                +  +  D      G    L+ +   G K  VI N      S T   L+  G    
Sbjct: 85  KRATARAILNVDESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLME- 143

Query: 91  LFAGAITSGEL 101
                  + E+
Sbjct: 144 FIDKTFFADEV 154

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} Length = 241

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 46  KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104
           +  PGA   L  L   G ++ +I++ +       +K+  L  D   F   I S     +
Sbjct: 94  REVPGARKVLIRLKELGYELGIITDGNPV--KQWEKILRLELDD-FFEHVIISDFEGVK 149

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Length = 137

 Score = 44.3 bits (105), Expect = 6e-07
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89
            +  ++D  GVL    +      + L      G   V++SN           ++ L  + 
Sbjct: 2   MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGA--APIRELETNG 59

Query: 90  SLFAGAITSGEL 101
            +    + SGEL
Sbjct: 60  -VVDKVLLSGEL 70

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 25  AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84
            +  R        +  L       PGA+  LE L     K  + ++      T    LK+
Sbjct: 70  EQAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCIATSGGID--TATINLKA 127

Query: 85  LGFDPSLFAGAITSGELTH 103
           L  D       +T  ++++
Sbjct: 128 LKLDI-NKINIVTRDDVSY 145

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 Length = 190

 Score = 44.5 bits (106), Expect = 7e-07
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 9/90 (10%)

Query: 19  NGLRHIAET-----RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73
                  ET       F     +      +    + G    LE ++  G +  ++S+ + 
Sbjct: 50  VSTPFAIETFAPNLENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRND 109

Query: 74  RASTTIDKLKSLGFDPSLFAGAITSGELTH 103
           +    ++ L+        F   +TS     
Sbjct: 110 QV---LEILEKTSIAA-YFTEVVTSSSGFK 135

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} Length = 263

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 42  HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
               +   GA  TL    T G ++ VISN  RR       L  LG     F   +TS   
Sbjct: 102 PCTWQVLDGAEDTLRECRTRGLRLAVISNFDRR---LEGILGGLGLRE-HFDFVLTSEAA 157

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 225

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 12  PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISN 70
              F  L G+    +   F+     +  +  +     +P  + TL  L   G ++ +IS 
Sbjct: 54  EESFSILTGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIIST 113

Query: 71  SSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103
             R    +   L++   D   F   I   ++TH
Sbjct: 114 KYRFRILSF--LRNHMPDD-WFDIIIGGEDVTH 143

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 21  LRHIA-----ETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA 75
           L H+A     E+    AWLL+    L  G +P PGA+  +  LA  G ++ +++ ++R  
Sbjct: 40  LTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAGRGYRLGILTRNAREL 99

Query: 76  STTIDKLKSLGFDPSLFAGAITSG 99
                 L+++G     FA A   G
Sbjct: 100 --AHVTLEAIGLAD-CFAEADVLG 120

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 12  PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71
           P    TL G R    T  ++  L        D      GAI  L+ L      M ++SN 
Sbjct: 71  PKYLITLLGKRWKEATILYENSLEKS--QKSDNFMLNDGAIELLDTLKENNITMAIVSNK 128

Query: 72  SRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103
           +        ++         F   I SG+   
Sbjct: 129 NGER--LRSEIHHKNLTH-YFDSIIGSGDTGT 157

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 13  HLFQTL-NGLRHIAETRRFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVIS 69
            ++Q    G +   +  +  A    + G ++     +P       L  L   G ++ + +
Sbjct: 179 EVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIAT 238

Query: 70  NSSRRASTTIDKLKSLG----FDPSLFAGA 95
                   T+   ++LG    F+    A A
Sbjct: 239 GRPYT--ETVVPFENLGLLPYFEADFIATA 266

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 207

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 46  KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTH 103
              PGA   L     +G +  + ++    A      LK LG +   F   +TS     
Sbjct: 85  VLMPGAREVLAWADESGIQQFIYTHKGNNA---FTILKDLGVES-YFTEILTSQSGFV 138

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Length = 259

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 20/89 (22%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 12  PHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71
             +   L           F   L  +F     G     GA  TL  L   G    + SNS
Sbjct: 76  DGVLAYLAQQHDFVPPPDFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNS 135

Query: 72  SRRASTTIDKLKSLGFDPSLFAGAITSGE 100
            R       KL+  G    L    I    
Sbjct: 136 ERGRLHL--KLRVAGLTE-LAGEHIYDPS 161

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} PDB: 1x42_A Length = 234

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 38  FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97
             +     + YP  +  L+ L      + +I++S       +  L +LG    LF    T
Sbjct: 92  LRMSQRYGELYPEVVEVLKSLK-GKYHVGMITDSD--TEQAMAFLDALGIKD-LFDSITT 147

Query: 98  SGEL 101
           S E 
Sbjct: 148 SEEA 151

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} Length = 240

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 31  KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90
           + +  D F ++       P A   LE LA     + ++SN          K++S G D  
Sbjct: 92  ERFSEDFFAIIPTKSGLMPHAKEVLEYLA-PQYNLYILSNGF--RELQSRKMRSAGVDR- 147

Query: 91  LFAGAITSGEL 101
            F   I S +L
Sbjct: 148 YFKKIILSEDL 158

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A Length = 267

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 3/77 (3%)

Query: 28  RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87
             ++ +    F +L     P  G    +  L   G K+   +  +R     +   K    
Sbjct: 85  EMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIV--AKEAAL 142

Query: 88  DPSLFAGAITSGELTHQ 104
                   + + +    
Sbjct: 143 QG-YKPDFLVTPDDVPA 158

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A Length = 260

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 38  FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97
                          + L  L     ++++++N  R+  T  +K+++       F   + 
Sbjct: 113 KSTRLQHMILADDVKAMLTELR-KEVRLLLLTNGDRQ--TQREKIEACACQS-YFDAIVI 168

Query: 98  SGELTHQ 104
            GE   +
Sbjct: 169 GGEQKEE 175

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 Length = 209

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 25  AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84
           +E   F+A   D     +D  + YPG  S  E L  +  ++ ++++  R    +   ++S
Sbjct: 62  SEFDHFQAQYEDVMASHYDQIELYPGITSLFEQLP-SELRLGIVTSQRRNELESG--MRS 118

Query: 85  LGFDPSLFAGAITSG 99
             F          S 
Sbjct: 119 YPFMM--RMAVTISA 131

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Length = 247

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 25  AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS 84
            E +       ++F       +  PGA+  L  + + G   +V++ S +   + +D+L  
Sbjct: 88  EEIKAIYQAKTEEFNKC-PKAERMPGALEVLTKIKSEGLTPMVVTGSGQT--SLLDRLNH 144

Query: 85  LGFDPSLFAGAITSGELTH 103
                      +T+ ++ +
Sbjct: 145 NFPGIFQANLMVTAFDVKY 163

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} Length = 234

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 14  LFQTLNGLRHIAETRRFKAWLLDQF-GVLHDGKKPYPGAISTLEMLATTGA-KMVVISNS 71
           + +T   + +          ++D    +L    +  PG   TL+ L  TG  K+VV +  
Sbjct: 72  MVETALQISNGKIAADIIRQIVDLGKSLLKMPIELLPGVKETLKTLKETGKYKLVVATKG 131

Query: 72  SRRASTTIDKLKSLGFDPSLFAGAITSGE 100
                   +KL+  G  P  F       +
Sbjct: 132 DLL--DQENKLERSGLSP-YFDHIEVMSD 157

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} Length = 226

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 46  KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101
           K Y G  + L  L   G  +VV ++     S  I  L+        F   + S   
Sbjct: 86  KVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQI--LEHFKLAF-YFDAIVGSSLD 138

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Length = 226

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 25  AETRRFKAWLLDQFGVL-HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83
              +     ++ +   L  + +   PG    + +    G  + + S S       +  L 
Sbjct: 72  PSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKV--LT 129

Query: 84  SLGFDPSLFAGAITSGELTH 103
                   F    ++ +L +
Sbjct: 130 MFDLRD-SFDALASAEKLPY 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	99.61
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.61
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.6
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.57
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.54
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	99.51
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	99.51
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.45
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.4
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.38
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.27
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.26
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.21
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.2
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.19
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.16
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.15
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	99.11
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.1
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.1
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	99.09
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.08
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.07
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	99.06
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.04
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.03
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.02
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	98.99
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	98.96
2o2x_A	218	Hypothetical protein; structural genomics, joint c	98.95
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	98.95
3mn1_A	189	Probable YRBI family phosphatase; structural genom	98.95
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	98.9
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	98.9
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	98.89
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	98.87
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	98.85
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	98.84
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	98.84
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	98.83
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	98.83
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	98.83
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	98.81
3mmz_A	176	Putative HAD family hydrolase; structural genomics	98.81
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	98.8
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	98.79
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	98.79
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	98.79
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	98.78
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	98.78
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	98.77
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	98.77
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	98.75
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	98.74
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	98.73
3fvv_A	232	Uncharacterized protein; unknown function, structu	98.73
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	98.72
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	98.72
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	98.71
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	98.71
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	98.7
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	98.7
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	98.69
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	98.69
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	98.69
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	98.69
2hsz_A	243	Novel predicted phosphatase; structural genomics,	98.68
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	98.68
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	98.68
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	98.68
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	98.67
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	98.67
3dao_A	283	Putative phosphatse; structural genomics, joint ce	98.66
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	98.66
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	98.65
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	98.65
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	98.64
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	98.64
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	98.64
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	98.64
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	98.64
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	98.63
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	98.63
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	98.63
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	98.63
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	98.62
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	98.61
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	98.61
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	98.6
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	98.6
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	98.6
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	98.6
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	98.58
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	98.58
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	98.56
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	98.55
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	98.55
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	98.51
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	98.5
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	98.5
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	98.49
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	98.48
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	98.48
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	98.47
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	98.45
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	98.43
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	98.43
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	98.41
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	98.37
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	98.37
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.37
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	98.36
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	98.34
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	98.32
1te2_A	226	Putative phosphatase; structural genomics, phospha	98.32
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	98.29
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	98.25
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.24
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	98.19
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	98.17
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	98.16
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	98.15
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	98.15
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	98.08
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	98.08
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	97.99
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	97.97
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	97.93
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	97.87
2zg6_A	220	Putative uncharacterized protein ST2620, probable	97.84
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	97.76
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	97.75
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	97.73
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	97.71
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	97.7
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	97.6
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	97.55
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	97.53
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	97.52
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	97.5
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	96.55
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	97.35
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	97.31
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	97.14
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	97.01
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	97.0
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	96.97
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	96.88
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	96.83
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	96.79
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	96.64
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	96.31
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	96.19
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	95.81
2zg6_A	220	Putative uncharacterized protein ST2620, probable	95.34
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	95.27
4gxt_A	385	A conserved functionally unknown protein; structur	95.22
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	94.96
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	94.95
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	94.84
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	94.61
2kln_A	130	Probable sulphate-transport transmembrane protein;	94.45
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	94.29
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	93.97
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	93.68
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	93.52
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	93.4
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	93.4
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	93.33
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	93.31
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	93.19
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	92.96
3llo_A	143	Prestin; STAS domain, cell shape, glycoprotein, me	92.27
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	91.67
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	91.31
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	90.73
3zxn_A	123	RSBS, anti-sigma-factor antagonist (STAS) domain p	90.65
1h4x_A	117	SPOIIAA, anti-sigma F factor antagonist; cell diff	89.83
2ka5_A	125	Putative anti-sigma factor antagonist TM_1081; ter	89.75
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	87.87
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	87.75
1th8_B	116	Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,	87.68
4hyl_A	117	Stage II sporulation protein; structural genomics,	87.4
3t6o_A	121	Sulfate transporter/antisigma-factor antagonist S;	87.34
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	86.24
1sbo_A	110	Putative anti-sigma factor antagonist TM1442; open	86.03
4dgf_A	135	Sulfate transporter sulfate transporter family PR;	86.0
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	85.68
3can_A	182	Pyruvate-formate lyase-activating enzyme; structur	84.44
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	82.11
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	81.27
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	80.34

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=99.61  E-value=3.3e-15  Score=110.88  Aligned_cols=95  Identities=22%  Similarity=0.436  Sum_probs=84.7

Q ss_pred             hhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCC-CcCCCce
Q 033480           18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFD-PSLFAGA   95 (118)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~-~~~fd~i   95 (118)
                      .+.+.+++.  +++.++||+||||+++..++|++.++|++|+++|++++++||++ +....+.+.++.+|++ .. ++.+
T Consensus         4 ~~~~~~~~~--~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~~~~-~~~i   80 (284)
T 2hx1_A            4 IESFKSLLP--KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSIT-ADKI   80 (284)
T ss_dssp             BCCHHHHGG--GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCC-GGGE
T ss_pred             HHHHHHHHh--cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcCCCC-HhhE
Confidence            345788888  89999999999999999999999999999999999999999965 6777788999999998 77 5899


Q ss_pred             eehHHHHHHHHHhccCCCccc
Q 033480           96 ITSGELTHQYLLRLIIASSVI  116 (118)
Q Consensus        96 its~~v~~~~l~~~~~~~~v~  116 (118)
                      +++..+..+|+++.+++ +++
T Consensus        81 i~~~~~~~~~l~~~~~~-~v~  100 (284)
T 2hx1_A           81 ISSGMITKEYIDLKVDG-GIV  100 (284)
T ss_dssp             EEHHHHHHHHHHHHCCS-EEE
T ss_pred             EcHHHHHHHHHHhhcCC-cEE
Confidence            99999999999987776 554

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.61  E-value=2.9e-15  Score=109.88  Aligned_cols=87  Identities=22%  Similarity=0.394  Sum_probs=77.9

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      ++|.++||+||||+++..++|++.++|++|+++|++++++||++ |+...+.+.++.+|++.. .+.++++..+..+++.
T Consensus         7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~~-~~~ii~~~~~~~~~~~   85 (268)
T 3qgm_A            7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVG-EDEILVATYATARFIA   85 (268)
T ss_dssp             CCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCCC-GGGEEEHHHHHHHHHH
T ss_pred             cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCCC-HHHeeCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999976 777788899999999877 4899999999999998


Q ss_pred             hccCCCccc
Q 033480          108 RLIIASSVI  116 (118)
Q Consensus       108 ~~~~~~~v~  116 (118)
                      +...+.+++
T Consensus        86 ~~~~~~~~~   94 (268)
T 3qgm_A           86 REKPNAKVF   94 (268)
T ss_dssp             HHSTTCEEE
T ss_pred             hhCCCCeEE
Confidence            876655543

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.60  E-value=3.3e-15  Score=109.95  Aligned_cols=88  Identities=18%  Similarity=0.334  Sum_probs=78.2

Q ss_pred             cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l  106 (118)
                      |++|.++||+||||+++...+|++.++|++|+++|++++++||++ |+...+...++.+|+... .+.++++..+..+++
T Consensus         3 m~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~~-~~~ii~~~~~~~~~l   81 (264)
T 3epr_A            3 LAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETP-LETIYTATMATVDYM   81 (264)
T ss_dssp             CCCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCCC-GGGEEEHHHHHHHHH
T ss_pred             CCCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC-hhheecHHHHHHHHH
Confidence            469999999999999999988999999999999999999999986 777788899999999877 488999999999999


Q ss_pred             HhccCCCccc
Q 033480          107 LRLIIASSVI  116 (118)
Q Consensus       107 ~~~~~~~~v~  116 (118)
                      ++..+...++
T Consensus        82 ~~~~~~~~~~   91 (264)
T 3epr_A           82 NDMNRGKTAY   91 (264)
T ss_dssp             HHHTCCSEEE
T ss_pred             HHhCCCCeEE
Confidence            8876655543

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.57  E-value=2.1e-14  Score=108.04  Aligned_cols=95  Identities=27%  Similarity=0.316  Sum_probs=84.4

Q ss_pred             CccchhhHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCC-CcC
Q 033480           14 LFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFD-PSL   91 (118)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~-~~~   91 (118)
                      ...+...+++++.  +++.++||+||||+++..++|++.++|++|+++|++++++||++ +....+...++.+|+. .. 
T Consensus         7 ~~~~~~~~~~~~~--~~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~~~~-   83 (306)
T 2oyc_A            7 ERLRGAALRDVLG--RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFGGLR-   83 (306)
T ss_dssp             EECCHHHHHHHHH--HCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCCSCC-
T ss_pred             hcCCHHHHHHHHh--hCCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCCcCC-
Confidence            4566778899999  99999999999999999999999999999999999999999976 6777788999999997 55 


Q ss_pred             CCceeehHHHHHHHHHhccC
Q 033480           92 FAGAITSGELTHQYLLRLII  111 (118)
Q Consensus        92 fd~iits~~v~~~~l~~~~~  111 (118)
                      .+.+++++.+...|+.++.+
T Consensus        84 ~~~i~~~~~~~~~~l~~~~~  103 (306)
T 2oyc_A           84 AEQLFSSALCAARLLRQRLP  103 (306)
T ss_dssp             GGGEEEHHHHHHHHHHHHCC
T ss_pred             hhhEEcHHHHHHHHHHhhCC
Confidence            47999999999999988654

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.54  E-value=1.2e-14  Score=106.60  Aligned_cols=86  Identities=23%  Similarity=0.313  Sum_probs=76.1

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      ++|.++||+||||+++..++|++.++|++|+++|++++++||++ |+...+...++.+|+... .+.++++..+..+++.
T Consensus         5 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~~~-~~~ii~~~~~~~~~~~   83 (266)
T 3pdw_A            5 TYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPAT-EEQVFTTSMATAQHIA   83 (266)
T ss_dssp             CCSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCCCC-GGGEEEHHHHHHHHHH
T ss_pred             cCCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC-HHHccCHHHHHHHHHH
Confidence            49999999999999988889999999999999999999999966 777788899999999877 4889999999999988


Q ss_pred             hccCCCcc
Q 033480          108 RLIIASSV  115 (118)
Q Consensus       108 ~~~~~~~v  115 (118)
                      +....+++
T Consensus        84 ~~~~~~~~   91 (266)
T 3pdw_A           84 QQKKDASV   91 (266)
T ss_dssp             HHCTTCEE
T ss_pred             hhCCCCEE
Confidence            77655544

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=99.51  E-value=6.4e-14  Score=103.17  Aligned_cols=86  Identities=28%  Similarity=0.414  Sum_probs=75.9

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHHh
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR  108 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~~  108 (118)
                      ++.++||+||||+++..++|++.++|++|+++|++++++||++ +....+.+.|+.+|++.. ++.++++..+..+|+++
T Consensus         1 ik~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~~-~~~i~~~~~~~~~~l~~   79 (263)
T 1zjj_A            1 MVAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS-SSIIITSGLATRLYMSK   79 (263)
T ss_dssp             CEEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCCC-GGGEEEHHHHHHHHHHH
T ss_pred             CeEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC-hhhEEecHHHHHHHHHH
Confidence            4789999999999998889999999999999999999999987 455667788889999876 48999999999999999


Q ss_pred             ccCCCccc
Q 033480          109 LIIASSVI  116 (118)
Q Consensus       109 ~~~~~~v~  116 (118)
                      .+++.+|+
T Consensus        80 ~~~~~~v~   87 (263)
T 1zjj_A           80 HLDPGKIF   87 (263)
T ss_dssp             HSCCCCEE
T ss_pred             hCCCCEEE
Confidence            87766554

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=99.51  E-value=1e-14  Score=113.74  Aligned_cols=84  Identities=24%  Similarity=0.289  Sum_probs=74.2

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHH-hCCCCCcCCCceeehHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLK-SLGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~-~~gi~~~~fd~iits~~v~~~~l  106 (118)
                      +.++++||+||||+++..++||+.++|+.|+++|++++++||++ ++.+.+.+.|+ .+|++.. .++|++|..+++.|+
T Consensus        12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~-~~~i~ts~~~~~~~~   90 (352)
T 3kc2_A           12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVS-PLQIIQSHTPYKSLV   90 (352)
T ss_dssp             CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCC-GGGEECTTGGGGGGT
T ss_pred             cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCC-hhhEeehHHHHHHHH
Confidence            68999999999999999999999999999999999999999987 56677888887 6999987 499999999998887


Q ss_pred             HhccCCCccc
Q 033480          107 LRLIIASSVI  116 (118)
Q Consensus       107 ~~~~~~~~v~  116 (118)
                      .   .+++||
T Consensus        91 ~---~~~~v~   97 (352)
T 3kc2_A           91 N---KYSRIL   97 (352)
T ss_dssp             T---TCSEEE
T ss_pred             h---cCCEEE
Confidence            4   345554

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.45  E-value=3.9e-13  Score=98.42  Aligned_cols=86  Identities=26%  Similarity=0.413  Sum_probs=74.3

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      ++++++||+||||+++..+.|++.++|++|+++|++++++||++ |....+.+.++.+|++... +.++++..+...++.
T Consensus        16 ~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~~~~-~~ii~~~~~~~~~~~   94 (271)
T 1vjr_A           16 KIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPD-DAVVTSGEITAEHML   94 (271)
T ss_dssp             GCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHHH
T ss_pred             CCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCCCCh-hhEEcHHHHHHHHHH
Confidence            79999999999999998899999999999999999999999986 7777888899999997653 689999988888887


Q ss_pred             hccCCCcc
Q 033480          108 RLIIASSV  115 (118)
Q Consensus       108 ~~~~~~~v  115 (118)
                      +..++..+
T Consensus        95 ~~~~~~~~  102 (271)
T 1vjr_A           95 KRFGRCRI  102 (271)
T ss_dssp             HHHCSCEE
T ss_pred             HhCCCCeE
Confidence            76444433

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.40  E-value=6e-13  Score=93.83  Aligned_cols=72  Identities=19%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             cCCcEEEEeccCcccC---------------CCccCccHHHHHHHHHHCCCcEEEEeCCCC-ChHHHHHHHHhCCCCCcC
Q 033480           28 RRFKAWLLDQFGVLHD---------------GKKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFDPSL   91 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~---------------~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~~~~~~~~L~~~gi~~~~   91 (118)
                      |.++.++||+||||+.               ...++||+.++|++|+++|++++|+||++. ....+...|+.+|+..+ 
T Consensus         1 m~ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~-   79 (189)
T 3ib6_A            1 MSLTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDY-   79 (189)
T ss_dssp             --CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGG-
T ss_pred             CCceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhh-
Confidence            5789999999999944               246899999999999999999999999874 33567788999999988 


Q ss_pred             CCceeehHH
Q 033480           92 FAGAITSGE  100 (118)
Q Consensus        92 fd~iits~~  100 (118)
                      ||.++++++
T Consensus        80 fd~i~~~~~   88 (189)
T 3ib6_A           80 FDFIYASNS   88 (189)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEccc
Confidence            799998875

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=1.9e-13  Score=90.07  Aligned_cols=70  Identities=20%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      +++.++||+||||+....++||+.++|++|+++|++++++||+++..  +...++.+|+..+ |+.++++.+.
T Consensus         1 ~~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~--~~~~l~~~~l~~~-f~~i~~~~~~   70 (137)
T 2pr7_A            1 GMRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGL--GAAPIRELETNGV-VDKVLLSGEL   70 (137)
T ss_dssp             CCCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGG--GGHHHHHHHHTTS-SSEEEEHHHH
T ss_pred             CCcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHH--HHHHHHHCChHhh-ccEEEEeccC
Confidence            36899999999998777899999999999999999999999987543  4467788888887 7999988654

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.27  E-value=2.4e-11  Score=88.65  Aligned_cols=86  Identities=19%  Similarity=0.303  Sum_probs=72.9

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHh-CCCCCcCCCceeehHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~-~gi~~~~fd~iits~~v~~~~l  106 (118)
                      .++.++||+||||+++...++++.++++.++++|++++++||++ .....+.+.+.. +|++... +.++++.....+|+
T Consensus         4 ~~k~v~fDlDGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~~~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~   82 (264)
T 1yv9_A            4 DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPA-SLVYTATLATIDYM   82 (264)
T ss_dssp             SCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCG-GGEEEHHHHHHHHH
T ss_pred             cCCEEEEeCCCeEEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHhcCCCCCh-hhEEcHHHHHHHHH
Confidence            58999999999999998888999999999999999999999987 445566677777 9998763 88999999988888


Q ss_pred             HhccCCCcc
Q 033480          107 LRLIIASSV  115 (118)
Q Consensus       107 ~~~~~~~~v  115 (118)
                      .+..+...+
T Consensus        83 ~~~~~~~~~   91 (264)
T 1yv9_A           83 KEANRGKKV   91 (264)
T ss_dssp             HHHCCCSEE
T ss_pred             HhhCCCCEE
Confidence            877665543

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.26  E-value=3.9e-11  Score=86.56  Aligned_cols=80  Identities=26%  Similarity=0.336  Sum_probs=67.5

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      .++.++||+||||+++...++++.++++.|+++|++++++||++ +....+.+.++.+|++... +.++++......++.
T Consensus         6 ~ik~i~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~   84 (259)
T 2ho4_A            6 ALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKLEFEISE-DEIFTSLTAARNLIE   84 (259)
T ss_dssp             CCCEEEEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHHH
T ss_pred             hCCEEEEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHHcCCCccH-HHeecHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999986 6667788889999998763 789999888887776


Q ss_pred             hc
Q 033480          108 RL  109 (118)
Q Consensus       108 ~~  109 (118)
                      +.
T Consensus        85 ~~   86 (259)
T 2ho4_A           85 QK   86 (259)
T ss_dssp             HH
T ss_pred             Hc
Confidence            54

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.21  E-value=1.1e-11  Score=92.77  Aligned_cols=70  Identities=23%  Similarity=0.283  Sum_probs=58.1

Q ss_pred             CCcEEEEeccCcccCC--------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCC-hHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDG--------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRR-ASTTIDK   81 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~--------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-~~~~~~~   81 (118)
                      ++++++||+||||+.+                          ..++||+.++|+.|+++|++++|+||++.. ...+...
T Consensus        58 ~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~  137 (258)
T 2i33_A           58 KKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKN  137 (258)
T ss_dssp             SEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHH
T ss_pred             CCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHH
Confidence            7899999999999988                          578999999999999999999999998632 4567788


Q ss_pred             HHhCCCC--CcCCCceeehH
Q 033480           82 LKSLGFD--PSLFAGAITSG   99 (118)
Q Consensus        82 L~~~gi~--~~~fd~iits~   99 (118)
                      |+.+|+.  .+ |+.+++..
T Consensus       138 L~~~Gl~~v~~-~~vi~~~~  156 (258)
T 2i33_A          138 LERVGAPQATK-EHILLQDP  156 (258)
T ss_dssp             HHHHTCSSCST-TTEEEECT
T ss_pred             HHHcCCCcCCC-ceEEECCC
Confidence            8999998  44 45555543

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.20  E-value=2.2e-11  Score=85.44  Aligned_cols=65  Identities=18%  Similarity=0.080  Sum_probs=54.7

Q ss_pred             CCcEEEEeccCcccCC-------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDG-------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK   83 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~-------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~   83 (118)
                      .++.++||+||||+..                         ..++||+.++|++|+++|++++|+||++. ...+...++
T Consensus        26 ~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~-~~~~~~~l~  104 (187)
T 2wm8_A           26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSE-IEGANQLLE  104 (187)
T ss_dssp             SCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSC-HHHHHHHHH
T ss_pred             ccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCC-hHHHHHHHH
Confidence            5899999999999932                         25689999999999999999999999852 244668889


Q ss_pred             hCCCCCcCCCce
Q 033480           84 SLGFDPSLFAGA   95 (118)
Q Consensus        84 ~~gi~~~~fd~i   95 (118)
                      .+|+..+ |+.+
T Consensus       105 ~~gl~~~-f~~~  115 (187)
T 2wm8_A          105 LFDLFRY-FVHR  115 (187)
T ss_dssp             HTTCTTT-EEEE
T ss_pred             HcCcHhh-ccee
Confidence            9999988 6875

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.19  E-value=4.5e-11  Score=85.69  Aligned_cols=66  Identities=23%  Similarity=0.247  Sum_probs=55.1

Q ss_pred             CCcEEEEeccCcccCCC---------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-------------hHHHHHHHHhCC
Q 033480           29 RFKAWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRR-------------ASTTIDKLKSLG   86 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~---------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-------------~~~~~~~L~~~g   86 (118)
                      .++.++||+||||+.+.         .++||+.++|++|+++|++++|+||+++.             ...+...|+.+|
T Consensus        24 ~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  103 (211)
T 2gmw_A           24 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD  103 (211)
T ss_dssp             CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence            68999999999999875         78999999999999999999999998631             234667888999


Q ss_pred             CCCcCCCceee
Q 033480           87 FDPSLFAGAIT   97 (118)
Q Consensus        87 i~~~~fd~iit   97 (118)
                      +.   |+.++.
T Consensus       104 l~---f~~~~~  111 (211)
T 2gmw_A          104 VD---LDGIYY  111 (211)
T ss_dssp             CC---CSEEEE
T ss_pred             Cc---eEEEEE
Confidence            86   466653

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.16  E-value=3.4e-11  Score=83.29  Aligned_cols=57  Identities=23%  Similarity=0.378  Sum_probs=47.5

Q ss_pred             CcEEEEeccCcccCCC----------ccCccHHHHHHHHHHCCCcEEEEeCCCCC-------------hHHHHHHHHhCC
Q 033480           30 FKAWLLDQFGVLHDGK----------KPYPGAISTLEMLATTGAKMVVISNSSRR-------------ASTTIDKLKSLG   86 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~----------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~-------------~~~~~~~L~~~g   86 (118)
                      +|.+|||+||||+.+.          +++||+.++|++|+++|++++|+||+++.             ...+...|+.+|
T Consensus         1 ~k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g   80 (179)
T 3l8h_A            1 MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMG   80 (179)
T ss_dssp             CCEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCC
Confidence            5789999999998763          47999999999999999999999998741             023567788888

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.15  E-value=8.8e-11  Score=80.25  Aligned_cols=84  Identities=25%  Similarity=0.339  Sum_probs=64.2

Q ss_pred             HHHHhhcCCcEEEEeccCcccCCCc-----------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           22 RHIAETRRFKAWLLDQFGVLHDGKK-----------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        22 ~~~~~~~~~~~~~~D~DGtL~~~~~-----------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+...  .++.++||+||||+++..           +.|++.++|++|+++|++++|+||+++  ..+...++.+|+..+
T Consensus         3 ~~~~~--~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~   78 (162)
T 2p9j_A            3 RDRVK--KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDS--APLITRLKELGVEEI   78 (162)
T ss_dssp             HHHHH--HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCC--HHHHHHHHHTTCCEE
T ss_pred             ccccc--ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCc--HHHHHHHHHcCCHhh
Confidence            34555  799999999999997542           246688999999999999999999865  346688899999877


Q ss_pred             CCCceeehHHHHHHHHHhcc
Q 033480           91 LFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        91 ~fd~iits~~v~~~~l~~~~  110 (118)
                       |+.-..........+++..
T Consensus        79 -~~~~kp~~~~~~~~~~~~~   97 (162)
T 2p9j_A           79 -YTGSYKKLEIYEKIKEKYS   97 (162)
T ss_dssp             -EECC--CHHHHHHHHHHTT
T ss_pred             -ccCCCCCHHHHHHHHHHcC
Confidence             6776666666666666654

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=99.11  E-value=6e-10  Score=78.78  Aligned_cols=80  Identities=24%  Similarity=0.295  Sum_probs=65.0

Q ss_pred             cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l  106 (118)
                      |.+|.++||+||||++....++.+.++++.|+++|+++.++||.+ ++...+.+.+..+|+.... +.++.+......|.
T Consensus         1 M~~k~i~fDlDGTLl~~~~~~~~~~~~~~~l~~~g~~~~~~t~~~g~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~   79 (250)
T 2c4n_A            1 MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFL   79 (250)
T ss_dssp             CCCCEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHH
T ss_pred             CCccEEEEcCcceEEeCCEeCcCHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHHcCCCCCH-HHeEcHHHHHHHHH
Confidence            568999999999999998888888999999999999999999875 6666777788778876442 56777776666666


Q ss_pred             Hh
Q 033480          107 LR  108 (118)
Q Consensus       107 ~~  108 (118)
                      +.
T Consensus        80 ~~   81 (250)
T 2c4n_A           80 RR   81 (250)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.10  E-value=7e-11  Score=84.39  Aligned_cols=65  Identities=23%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             CCcEEEEeccCcccCCC--------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCc
Q 033480           29 RFKAWLLDQFGVLHDGK--------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG   94 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~--------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~   94 (118)
                      .++++|||+||||....              .++||+.++|++|+++|++++|+||+++.  .+...+   +  .+ ||.
T Consensus         5 ~~kav~fDlDGTL~d~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~--~~~~~~---~--~~-~d~   76 (196)
T 2oda_A            5 TFPALLFGLSGCLVDFGAQAATSDTPDDEHAQLTPGAQNALKALRDQGMPCAWIDELPEA--LSTPLA---A--PV-NDW   76 (196)
T ss_dssp             CCSCEEEETBTTTBCTTSTTTSCSSCCGGGGSBCTTHHHHHHHHHHHTCCEEEECCSCHH--HHHHHH---T--TT-TTT
T ss_pred             cCCEEEEcCCCceEeccccccchhhcccccCCcCcCHHHHHHHHHHCCCEEEEEcCChHH--HHHHhc---C--cc-CCE
Confidence            78999999999998622              56899999999999999999999987542  232222   2  23 688


Q ss_pred             eeehHHH
Q 033480           95 AITSGEL  101 (118)
Q Consensus        95 iits~~v  101 (118)
                      +++++++
T Consensus        77 v~~~~~~   83 (196)
T 2oda_A           77 MIAAPRP   83 (196)
T ss_dssp             CEECCCC
T ss_pred             EEECCcC
Confidence            8887653

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.10  E-value=1e-10  Score=83.16  Aligned_cols=86  Identities=21%  Similarity=0.300  Sum_probs=69.6

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCCccC----ccHHHH-------HHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGKKPY----PGAIST-------LEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~----pga~e~-------L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+.+...  +++.++||+||||+.+...+    +++.++       |+.|+++|++++|+||+++  ..+...++.+|+.
T Consensus        11 ~~~~~~~--~ik~vifD~DGtL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~--~~~~~~l~~lgl~   86 (191)
T 3n1u_A           11 ELLEKAK--KIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQN--AVVDHRMEQLGIT   86 (191)
T ss_dssp             HHHHHHH--TCSEEEECSTTTTBCSCCEECTTCCEECCBCHHHHHHHHHHHHTTCEEEEECSCCS--HHHHHHHHHHTCC
T ss_pred             HHHHHHh--cCCEEEEeCCCCCCCCceeecCCchhhhhccccChHHHHHHHHCCCeEEEEeCcCh--HHHHHHHHHcCCc
Confidence            4556666  89999999999999865433    456666       9999999999999999865  4467889999999


Q ss_pred             CcCCCceeehHHHHHHHHHhcc
Q 033480           89 PSLFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        89 ~~~fd~iits~~v~~~~l~~~~  110 (118)
                      .+ |+.+....+....++++..
T Consensus        87 ~~-~~~~kpk~~~~~~~~~~~~  107 (191)
T 3n1u_A           87 HY-YKGQVDKRSAYQHLKKTLG  107 (191)
T ss_dssp             EE-ECSCSSCHHHHHHHHHHHT
T ss_pred             cc-eeCCCChHHHHHHHHHHhC
Confidence            88 6888888888888877754

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=99.09  E-value=2e-10  Score=79.40  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=51.1

Q ss_pred             cCCcEEEEeccCcccCCC-----ccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGK-----KPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~-----~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~   88 (118)
                      |+++.++||+||||+++.     .+.|++.++|++|+++|+.++++|+++ +....+.+.++.+|++
T Consensus         1 m~~k~i~~DlDGTL~~~~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~   67 (142)
T 2obb_A            1 SNAMTIAVDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE   67 (142)
T ss_dssp             -CCCEEEECCBTTTBCSCTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCC
T ss_pred             CCCeEEEEECcCCCCCCCCccccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCC
Confidence            568999999999999865     357999999999999999999999876 3345677788888886

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.08  E-value=2.2e-10  Score=80.24  Aligned_cols=68  Identities=25%  Similarity=0.332  Sum_probs=55.3

Q ss_pred             cCCcEEEEeccCcccCC------------CccCccHHHHHHHHHHCCCcEEEEeCCCC-------------ChHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDG------------KKPYPGAISTLEMLATTGAKMVVISNSSR-------------RASTTIDKL   82 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-------------~~~~~~~~L   82 (118)
                      +.++.++||+||||+.+            ..++||+.++|++|+++|++++|+||++.             ....+...|
T Consensus        12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l   91 (176)
T 2fpr_A           12 SSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF   91 (176)
T ss_dssp             -CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHH
T ss_pred             CcCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHH
Confidence            47999999999999765            35789999999999999999999999742             234566788


Q ss_pred             HhCCCCCcCCCceeeh
Q 033480           83 KSLGFDPSLFAGAITS   98 (118)
Q Consensus        83 ~~~gi~~~~fd~iits   98 (118)
                      +.+|+.   |+.++.+
T Consensus        92 ~~~gl~---fd~v~~s  104 (176)
T 2fpr_A           92 TSQGVQ---FDEVLIC  104 (176)
T ss_dssp             HHTTCC---EEEEEEE
T ss_pred             HHcCCC---eeEEEEc
Confidence            999986   5788654

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=99.07  E-value=3.1e-10  Score=79.88  Aligned_cols=53  Identities=17%  Similarity=0.417  Sum_probs=46.1

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++++.|+++|++++++||+++  ..+...++.+|+..+ ||.+++++++
T Consensus        84 ~~~pg~~~~l~~L~~~g~~~~i~tn~~~--~~~~~~l~~~~l~~~-fd~~~~~~~~  136 (216)
T 3kbb_A           84 KENPGVREALEFVKSKRIKLALATSTPQ--REALERLRRLDLEKY-FDVMVFGDQV  136 (216)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHTTCGGG-CSEEECGGGS
T ss_pred             ccCccHHHHHHHHHHcCCCcccccCCcH--HHHHHHHHhcCCCcc-cccccccccc
Confidence            4689999999999999999999999864  346688899999999 7999998865

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=99.06  E-value=1e-09  Score=78.92  Aligned_cols=80  Identities=26%  Similarity=0.338  Sum_probs=66.5

Q ss_pred             CCcEEEEeccCcccC----CCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHH
Q 033480           29 RFKAWLLDQFGVLHD----GKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTH  103 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~----~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~  103 (118)
                      .++.++||+||||++    +..+.++..++++.++++|+++.++||.. ++...+...++.+|+.... +.++.......
T Consensus        11 ~~k~i~fDlDGTLl~s~~~~~~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~   89 (271)
T 2x4d_A           11 GVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAELVGQLQRLGFDISE-QEVTAPAPAAC   89 (271)
T ss_dssp             TCCEEEECCBTTTEECCTTTCEECTTHHHHHHHHHHSSSEEEEECCCCSSCHHHHHHHHHHTTCCCCG-GGEECHHHHHH
T ss_pred             cCCEEEEeCCCeEEecCCCCCccCcCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHCCCCCCH-HHeecHHHHHH
Confidence            589999999999998    56688999999999999999999999876 6667778888888887653 67888777766


Q ss_pred             HHHHhc
Q 033480          104 QYLLRL  109 (118)
Q Consensus       104 ~~l~~~  109 (118)
                      .++...
T Consensus        90 ~~~~~~   95 (271)
T 2x4d_A           90 QILKER   95 (271)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            666543

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.04  E-value=7.3e-10  Score=79.10  Aligned_cols=51  Identities=27%  Similarity=0.452  Sum_probs=43.3

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      +||+.++|++|+++|++++++||+++  ..+...++.+|+..+ |+.+++++++
T Consensus       107 ~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  157 (240)
T 2no4_A          107 YPDAAETLEKLKSAGYIVAILSNGND--EMLQAALKASKLDRV-LDSCLSADDL  157 (240)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEGGGT
T ss_pred             CCCHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHhcCcHHH-cCEEEEcccc
Confidence            48999999999999999999999754  346678899999988 7999988653

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.03  E-value=3.8e-10  Score=78.94  Aligned_cols=79  Identities=19%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             CCcEEEEeccCcccCCCc-----------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVLHDGKK-----------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~-----------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      .++.++||+||||+++..           +.+...++|++|+++|++++++||+++  ..+...++.+|+..+ |+....
T Consensus         7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~--~~~~~~~~~lgl~~~-~~~~k~   83 (180)
T 1k1e_A            7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDS--PILRRRIADLGIKLF-FLGKLE   83 (180)
T ss_dssp             GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCC--HHHHHHHHHHTCCEE-EESCSC
T ss_pred             CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCc--HHHHHHHHHcCCcee-ecCCCC
Confidence            689999999999998642           345788999999999999999999865  346688899999887 677666


Q ss_pred             hHHHHHHHHHhcc
Q 033480           98 SGELTHQYLLRLI  110 (118)
Q Consensus        98 s~~v~~~~l~~~~  110 (118)
                      ........+++..
T Consensus        84 k~~~~~~~~~~~~   96 (180)
T 1k1e_A           84 KETACFDLMKQAG   96 (180)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHcC
Confidence            6666666666643

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.02  E-value=4.9e-10  Score=80.31  Aligned_cols=86  Identities=20%  Similarity=0.257  Sum_probs=67.1

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCCcc----CccHHHH-------HHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGKKP----YPGAIST-------LEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~----~pga~e~-------L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+.+...  ++++++||+||||+.+...    -+++.++       |+.|+++|++++|+||+++  ..+...++.+|+.
T Consensus        17 ~~~~~~~--~ik~vifD~DGtL~d~~~~~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~--~~~~~~l~~lgi~   92 (195)
T 3n07_A           17 SLLEIAK--QIKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRS--QIVENRMKALGIS   92 (195)
T ss_dssp             HHHHHHH--TCCEEEECSTTTTSCSCCEECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHHTTCC
T ss_pred             HHHHHHh--CCCEEEEcCCCCcCCCcEEEccCchhhheeecccHHHHHHHHHCCCEEEEEECcCH--HHHHHHHHHcCCc
Confidence            4556666  8999999999999884322    1344445       9999999999999999865  4467889999999


Q ss_pred             CcCCCceeehHHHHHHHHHhcc
Q 033480           89 PSLFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        89 ~~~fd~iits~~v~~~~l~~~~  110 (118)
                      .+ |+.+.........++++..
T Consensus        93 ~~-~~~~k~k~~~~~~~~~~~~  113 (195)
T 3n07_A           93 LI-YQGQDDKVQAYYDICQKLA  113 (195)
T ss_dssp             EE-ECSCSSHHHHHHHHHHHHC
T ss_pred             EE-eeCCCCcHHHHHHHHHHhC
Confidence            87 6888777777777777654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=98.99  E-value=3e-10  Score=89.78  Aligned_cols=70  Identities=24%  Similarity=0.266  Sum_probs=56.4

Q ss_pred             CCcEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCC------C----hHHHHHHHHhC
Q 033480           29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSR------R----ASTTIDKLKSL   85 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r------~----~~~~~~~L~~~   85 (118)
                      .+++++||+||||+...             .++||+.++|+.|+++|++++|+||++.      .    ...+...|+.+
T Consensus        57 ~~k~v~fD~DGTL~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~l  136 (416)
T 3zvl_A           57 QGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKL  136 (416)
T ss_dssp             CSSEEEECSBTTTEECSSCSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCccccCCCccCCCCHHHhhhhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHc
Confidence            68999999999997653             3689999999999999999999999641      1    11256778889


Q ss_pred             CCCCcCCCceeehHHH
Q 033480           86 GFDPSLFAGAITSGEL  101 (118)
Q Consensus        86 gi~~~~fd~iits~~v  101 (118)
                      |+.   |+.+++++++
T Consensus       137 gl~---fd~i~~~~~~  149 (416)
T 3zvl_A          137 GVP---FQVLVATHAG  149 (416)
T ss_dssp             TSC---CEEEEECSSS
T ss_pred             CCC---EEEEEECCCC
Confidence            985   6888888754

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=98.96  E-value=1e-09  Score=79.62  Aligned_cols=50  Identities=22%  Similarity=0.166  Sum_probs=43.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++++.|+++|++++++||+.+    ....|+.+|+..+ ||.+++++++
T Consensus        96 ~~pg~~~ll~~L~~~g~~i~i~t~~~~----~~~~l~~~gl~~~-fd~i~~~~~~  145 (243)
T 4g9b_A           96 VLPGIRSLLADLRAQQISVGLASVSLN----APTILAALELREF-FTFCADASQL  145 (243)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCCCTT----HHHHHHHTTCGGG-CSEECCGGGC
T ss_pred             ccccHHHHHHhhhcccccceecccccc----hhhhhhhhhhccc-cccccccccc
Confidence            478999999999999999999998643    3467899999998 7999999875

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=98.95  E-value=1.2e-09  Score=78.29  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=51.4

Q ss_pred             CCcEEEEeccCcccCC---------CccCccHHHHHHHHHHCCCcEEEEeCCCCCh-------------HHHHHHHHhCC
Q 033480           29 RFKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSSRRA-------------STTIDKLKSLG   86 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-------------~~~~~~L~~~g   86 (118)
                      .++.+++|+||||+.+         ..++||+.++|++|+++|++++|+||+++..             ..+...++.+|
T Consensus        30 ~~k~i~~D~DGtl~~~~~y~~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  109 (218)
T 2o2x_A           30 HLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEG  109 (218)
T ss_dssp             SCCCEEECSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCEEEEeCCCCcCCCCcccCCcccCeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcC
Confidence            5899999999999987         6789999999999999999999999985410             34667888999


Q ss_pred             CC
Q 033480           87 FD   88 (118)
Q Consensus        87 i~   88 (118)
                      +.
T Consensus       110 l~  111 (218)
T 2o2x_A          110 VF  111 (218)
T ss_dssp             CC
T ss_pred             Cc
Confidence            75

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=98.95  E-value=6.8e-10  Score=75.90  Aligned_cols=79  Identities=18%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CCcEEEEeccCcccCCCccC----cc-------HHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVLHDGKKPY----PG-------AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~----pg-------a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      +++.++||+||||+.+...+    +.       ...+|+.|+++|++++++||+++  ..+...++.+|+..+ |+.+..
T Consensus         3 ~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~--~~~~~~~~~~gl~~~-~~~~kp   79 (164)
T 3e8m_A            3 EIKLILTDIDGVWTDGGMFYDQTGNEWKKFNTSDSAGIFWAHNKGIPVGILTGEKT--EIVRRRAEKLKVDYL-FQGVVD   79 (164)
T ss_dssp             CCCEEEECSTTTTSSSEEEECSSSCEEEEEEGGGHHHHHHHHHTTCCEEEECSSCC--HHHHHHHHHTTCSEE-ECSCSC
T ss_pred             cceEEEEcCCCceEcCcEEEcCCCcEEEEecCChHHHHHHHHHCCCEEEEEeCCCh--HHHHHHHHHcCCCEe-ecccCC
Confidence            68999999999999864221    11       22359999999999999999865  346688899999988 688877


Q ss_pred             hHHHHHHHHHhcc
Q 033480           98 SGELTHQYLLRLI  110 (118)
Q Consensus        98 s~~v~~~~l~~~~  110 (118)
                      ..+.....+++..
T Consensus        80 k~~~~~~~~~~~~   92 (164)
T 3e8m_A           80 KLSAAEELCNELG   92 (164)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcC
Confidence            7777777777754

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=98.95  E-value=1.1e-09  Score=77.35  Aligned_cols=85  Identities=25%  Similarity=0.312  Sum_probs=64.0

Q ss_pred             HHHHHhhcCCcEEEEeccCcccCCCccCccH-----------HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGA-----------ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        21 ~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga-----------~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      ..+...  ++++++||+||||+.+...+...           ..+|++|+++|++++|+||+++  ..+...++.+|+..
T Consensus        12 ~~~~~~--~ik~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~--~~~~~~~~~lgl~~   87 (189)
T 3mn1_A           12 LMQRGK--AIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKT--AIVERRAKSLGIEH   87 (189)
T ss_dssp             HHHHHH--TCCEEEECSTTTTSCSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHHHTCSE
T ss_pred             HHHHHH--hCCEEEEcCCCCcCCccEeeccCCcEeeeeccccHHHHHHHHHCCCEEEEEECcCh--HHHHHHHHHcCCHH
Confidence            344455  89999999999999864322111           1389999999999999999865  34678889999998


Q ss_pred             cCCCceeehHHHHHHHHHhcc
Q 033480           90 SLFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        90 ~~fd~iits~~v~~~~l~~~~  110 (118)
                      + |+.+....+.....+++..
T Consensus        88 ~-f~~~~~K~~~~~~~~~~~g  107 (189)
T 3mn1_A           88 L-FQGREDKLVVLDKLLAELQ  107 (189)
T ss_dssp             E-ECSCSCHHHHHHHHHHHHT
T ss_pred             H-hcCcCChHHHHHHHHHHcC
Confidence            8 6888666666666666654

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=98.90  E-value=5e-09  Score=70.09  Aligned_cols=59  Identities=19%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             CcEEEEeccCcccCCCc-------cCccHHHHHHHHHHCCCcEEEEeCCCCCh-------------HHHHHHHHhCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-------PYPGAISTLEMLATTGAKMVVISNSSRRA-------------STTIDKLKSLGFD   88 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-------------~~~~~~L~~~gi~   88 (118)
                      ++.++||+||||+++..       +.|++.++|++|+++|++++++||++...             ..+.+.++..++.
T Consensus         1 ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~~~nG~~~~~~~~~~~~i~~~~~~~~~~   79 (126)
T 1xpj_A            1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVP   79 (126)
T ss_dssp             CCEEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCC
T ss_pred             CCEEEEecCCCCCCCCCCccccCCCCHHHHHHHHHHHhCCCeEEEEeCCChhhccccccccCHHHHHHHHHHHHHcCCC
Confidence            47899999999997653       56899999999999999999999987432             3566677777664

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=98.90  E-value=1.9e-09  Score=75.89  Aligned_cols=86  Identities=20%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCCccCc-----------cHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYP-----------GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~p-----------ga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+.+...  .++.++||+||||+.+...++           ....+|++|+++|++++|+||+++  ..+...++.+|+.
T Consensus        18 ~~~~~~~--~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~v~ivT~~~~--~~~~~~l~~lgl~   93 (188)
T 2r8e_A           18 DVMAKAE--NIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKA--KLVEDRCATLGIT   93 (188)
T ss_dssp             HHHHHHH--TCSEEEECCCCCCBCSEEEEETTSCEEEEEEHHHHHHHHHHHTTTCEEEEECSSCC--HHHHHHHHHHTCC
T ss_pred             HHHHHHh--cCCEEEEeCCCCcCCCCEEecCCCcEEEEeecccHHHHHHHHHCCCeEEEEeCCCh--HHHHHHHHHcCCc
Confidence            4566667  899999999999998542221           122479999999999999999865  3466788899998


Q ss_pred             CcCCCceeehHHHHHHHHHhcc
Q 033480           89 PSLFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        89 ~~~fd~iits~~v~~~~l~~~~  110 (118)
                      .+ |+...........++++..
T Consensus        94 ~~-~~~~kpk~~~~~~~~~~~g  114 (188)
T 2r8e_A           94 HL-YQGQSNKLIAFSDLLEKLA  114 (188)
T ss_dssp             EE-ECSCSCSHHHHHHHHHHHT
T ss_pred             ee-ecCCCCCHHHHHHHHHHcC
Confidence            77 6887777777777777654

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=98.89  E-value=3.5e-09  Score=74.67  Aligned_cols=52  Identities=19%  Similarity=0.329  Sum_probs=44.0

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++++.
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  151 (233)
T 3umb_A          100 AFPENVPVLRQLREMGLPLGILSNGNP--QMLEIAVKSAGMSGL-FDHVLSVDAV  151 (233)
T ss_dssp             ECTTHHHHHHHHHTTTCCEEEEESSCH--HHHHHHHHTTTCTTT-CSEEEEGGGT
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCCCH--HHHHHHHHHCCcHhh-cCEEEEeccc
Confidence            378999999999999999999999854  346678899999988 7999988753

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=98.87  E-value=5.5e-09  Score=73.37  Aligned_cols=51  Identities=27%  Similarity=0.440  Sum_probs=43.5

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++.+
T Consensus        97 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  147 (230)
T 3um9_A           97 PFADVPQALQQLRAAGLKTAILSNGSR--HSIRQVVGNSGLTNS-FDHLISVDE  147 (230)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHHTCGGG-CSEEEEGGG
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEeCCCH--HHHHHHHHHCCChhh-cceeEehhh
Confidence            479999999999999999999999854  446678889999988 799998865

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=98.84  E-value=5.3e-09  Score=73.94  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=43.6

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.+++++++
T Consensus        96 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  147 (232)
T 1zrn_A           96 PFSEVPDSLRELKRRGLKLAILSNGSP--QSIDAVVSHAGLRDG-FDHLLSVDPV  147 (232)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEESGGG
T ss_pred             CCccHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHhcChHhh-hheEEEeccc
Confidence            358999999999999999999999754  346678899999988 7999988653

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=98.84  E-value=1e-09  Score=85.39  Aligned_cols=54  Identities=19%  Similarity=0.169  Sum_probs=38.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC--CCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL--GFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~--gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++|+||+..........+...  |+..+ ||.+++++++
T Consensus       101 ~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~~~-fd~i~~~~~~  156 (555)
T 3i28_A          101 INRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMH-FDFLIESCQV  156 (555)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTT-SSEEEEHHHH
T ss_pred             cChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhhhh-eeEEEecccc
Confidence            578999999999999999999999721100011223332  66667 7999999876

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=98.83  E-value=4.2e-09  Score=74.45  Aligned_cols=51  Identities=24%  Similarity=0.348  Sum_probs=43.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++.+
T Consensus       104 ~~~~~~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~-f~~i~~~~~  154 (231)
T 3kzx_A          104 LNDGAIELLDTLKENNITMAIVSNKNG--ERLRSEIHHKNLTHY-FDSIIGSGD  154 (231)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEETS
T ss_pred             ECcCHHHHHHHHHHCCCeEEEEECCCH--HHHHHHHHHCCchhh-eeeEEcccc
Confidence            468899999999999999999999754  446688899999988 799998764

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=98.83  E-value=8.6e-09  Score=76.51  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=50.2

Q ss_pred             hcCCcEEEEeccCcccCC-CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           27 TRRFKAWLLDQFGVLHDG-KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        27 ~~~~~~~~~D~DGtL~~~-~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +|+++.+++|+||||++. ....+.+.++|++|+++|++++++|+++  ...+...++.++++
T Consensus         6 ~m~~~li~~DlDGTLl~~~~~~~~~~~~~l~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~   66 (275)
T 1xvi_A            6 IQQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKT--SAEMLYLQKTLGLQ   66 (275)
T ss_dssp             CCCCEEEEEECTTTTSCSSCCSCCTTHHHHHHHHHTTCCEEEECSSC--HHHHHHHHHHTTCT
T ss_pred             ccCceEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCeEEEEcCCC--HHHHHHHHHHcCCC
Confidence            367899999999999985 4567889999999999999999999864  34566777888875

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=98.83  E-value=5.1e-09  Score=73.15  Aligned_cols=51  Identities=25%  Similarity=0.500  Sum_probs=42.4

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCC--CceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~f--d~iits~~  100 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |  +.+++++.
T Consensus        71 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~i~~~~~  123 (205)
T 3m9l_A           71 PAPGAVELVRELAGRGYRLGILTRNAR--ELAHVTLEAIGLADC-FAEADVLGRDE  123 (205)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHTTCGGG-SCGGGEECTTT
T ss_pred             CCccHHHHHHHHHhcCCeEEEEeCCch--HHHHHHHHHcCchhh-cCcceEEeCCC
Confidence            578999999999999999999999754  446688899999888 8  67776643

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=98.81  E-value=9.5e-09  Score=75.30  Aligned_cols=60  Identities=18%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      |.+|.++||+||||++... +.+...++|++|+++|+.++++|+++  ...+...++.+++..
T Consensus         3 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~~   63 (279)
T 3mpo_A            3 LTIKLIAIDIDGTLLNEKNELAQATIDAVQAAKAQGIKVVLCTGRP--LTGVQPYLDAMDIDG   63 (279)
T ss_dssp             --CCEEEECC-----------CHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHTTCCS
T ss_pred             cceEEEEEcCcCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHcCCCC
Confidence            5799999999999998765 56889999999999999999999754  445677888888764

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=98.81  E-value=2.8e-09  Score=74.56  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             CCcEEEEeccCcccCCCccC----ccHHH-------HHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVLHDGKKPY----PGAIS-------TLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~----pga~e-------~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      ++++++||+||||..+...+    ....+       +|++|+++|++++|+||+++  ..+...++.+|+. + |+....
T Consensus        11 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~--~~~~~~~~~lgi~-~-~~~~~~   86 (176)
T 3mmz_A           11 DIDAVVLDFDGTQTDDRVLIDSDGREFVSVHRGDGLGIAALRKSGLTMLILSTEQN--PVVAARARKLKIP-V-LHGIDR   86 (176)
T ss_dssp             GCSEEEECCTTTTSCSCCEECTTCCEEEEEEHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHHTCC-E-EESCSC
T ss_pred             cCCEEEEeCCCCcCcCCEeecCCccHhHhcccccHHHHHHHHHCCCeEEEEECcCh--HHHHHHHHHcCCe-e-EeCCCC
Confidence            58999999999999854321    11112       49999999999999999865  3466888999998 6 677777


Q ss_pred             hHHHHHHHHHhcc
Q 033480           98 SGELTHQYLLRLI  110 (118)
Q Consensus        98 s~~v~~~~l~~~~  110 (118)
                      ..+....++++..
T Consensus        87 k~~~l~~~~~~~~   99 (176)
T 3mmz_A           87 KDLALKQWCEEQG   99 (176)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcC
Confidence            7777777777654

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=98.80  E-value=1.7e-08  Score=69.53  Aligned_cols=51  Identities=16%  Similarity=0.285  Sum_probs=44.0

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|++|+++|++++++||+++  ..+...++.+|+..+ |+.++++++
T Consensus        90 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  140 (214)
T 3e58_A           90 IFPDVLKVLNEVKSQGLEIGLASSSVK--ADIFRALEENRLQGF-FDIVLSGEE  140 (214)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEGGG
T ss_pred             cCchHHHHHHHHHHCCCCEEEEeCCcH--HHHHHHHHHcCcHhh-eeeEeeccc
Confidence            578999999999999999999999754  446688899999988 799998875

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=98.79  E-value=1.4e-08  Score=74.34  Aligned_cols=59  Identities=22%  Similarity=0.278  Sum_probs=49.2

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      |++|.++||+||||++... +.+...++|++++++|+.++++|+++  ...+...++.++++
T Consensus         3 M~~kli~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~   62 (279)
T 4dw8_A            3 LKYKLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRP--TYGIVPLANELRMN   62 (279)
T ss_dssp             -CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHTTGG
T ss_pred             CcceEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCC--hHHHHHHHHHhCCC
Confidence            6799999999999998765 56899999999999999999999754  44566777888864

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=98.79  E-value=7.8e-09  Score=73.00  Aligned_cols=50  Identities=22%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++|+||+++    +...++.+|+..+ |+.+++++++
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~----~~~~l~~~gl~~~-f~~i~~~~~~  142 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN----APKILRRLAIIDD-FHAIVDPTTL  142 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT----HHHHHHHTTCTTT-CSEECCC---
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh----HHHHHHHcCcHhh-cCEEeeHhhC
Confidence            589999999999999999999999744    5578899999988 7999988775

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=98.79  E-value=6.8e-09  Score=73.27  Aligned_cols=51  Identities=25%  Similarity=0.347  Sum_probs=43.0

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      ..++||+.++|+.|++ |++++++||+++  ..+...++.+|+..+ ||.+++++
T Consensus        83 ~~~~~g~~~~l~~L~~-~~~l~i~T~~~~--~~~~~~l~~~gl~~~-f~~i~~~~  133 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSS-SYPLYITTTKDT--STAQDMAKNLEIHHF-FDGIYGSS  133 (210)
T ss_dssp             CEECTTHHHHHHHHHT-TSCEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHc-CCeEEEEeCCCH--HHHHHHHHhcCchhh-eeeeecCC
Confidence            3568999999999999 999999999754  335678899999998 79998875

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=98.78  E-value=1.5e-08  Score=75.31  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      |.+|.+++|+||||++... +.|.+.++|++|+++|++++++|+++.  ..+...++.++++.
T Consensus         3 mm~kli~~DlDGTLl~~~~~i~~~~~~aL~~l~~~Gi~vviaTGR~~--~~~~~~~~~l~l~~   63 (282)
T 1rkq_A            3 LAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPY--AGVHNYLKELHMEQ   63 (282)
T ss_dssp             CCCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCG--GGTHHHHHHTTCCS
T ss_pred             ccceEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHHhCCCC
Confidence            3489999999999998665 568999999999999999999998753  33556777787754

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=98.78  E-value=1.7e-08  Score=73.54  Aligned_cols=52  Identities=35%  Similarity=0.376  Sum_probs=45.2

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++.   +...++.+|+..+ |+.++++.++
T Consensus       106 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~~---~~~~l~~~gl~~~-f~~~~~~~~~  157 (263)
T 3k1z_A          106 QVLDGAEDTLRECRTRGLRLAVISNFDRR---LEGILGGLGLREH-FDFVLTSEAA  157 (263)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEESCCTT---HHHHHHHTTCGGG-CSCEEEHHHH
T ss_pred             eECcCHHHHHHHHHhCCCcEEEEeCCcHH---HHHHHHhCCcHHh-hhEEEeeccc
Confidence            46899999999999999999999997542   4678899999988 7999998875

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=98.77  E-value=9.9e-09  Score=77.21  Aligned_cols=69  Identities=25%  Similarity=0.365  Sum_probs=55.6

Q ss_pred             CCcEEEEeccCcccCCC---------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCC--ChHHHH
Q 033480           29 RFKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSR--RASTTI   79 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~---------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r--~~~~~~   79 (118)
                      +.++++||+||||+.+.                           .++||+.++|+.|+++|++++|+||++.  ..+.+.
T Consensus        57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~  136 (260)
T 3pct_A           57 KKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTV  136 (260)
T ss_dssp             -CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHH
T ss_pred             CCCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Confidence            34589999999998652                           4689999999999999999999999874  456788


Q ss_pred             HHHHhCCCCCcCCC-ceeeh
Q 033480           80 DKLKSLGFDPSLFA-GAITS   98 (118)
Q Consensus        80 ~~L~~~gi~~~~fd-~iits   98 (118)
                      ..|+.+|++.+ ++ .++..
T Consensus       137 ~~L~~lGi~~~-~~~~Lilr  155 (260)
T 3pct_A          137 DDMKRLGFTGV-NDKTLLLK  155 (260)
T ss_dssp             HHHHHHTCCCC-STTTEEEE
T ss_pred             HHHHHcCcCcc-ccceeEec
Confidence            99999999865 33 45543

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=98.77  E-value=9.6e-09  Score=74.53  Aligned_cols=54  Identities=19%  Similarity=0.286  Sum_probs=45.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~  102 (118)
                      .++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.+++++.+.
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~--~~~~~~~~~~gl~~~-f~~~~~~~k~~  197 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNR--FVAKWVAEELGLDDY-FAEVLPHEKAE  197 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHTCSEE-ECSCCGGGHHH
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCChhH-hHhcCHHHHHH
Confidence            3569999999999999999999999754  446678899999988 79999887664

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=98.75  E-value=1.8e-08  Score=73.74  Aligned_cols=50  Identities=24%  Similarity=0.310  Sum_probs=42.0

Q ss_pred             cCccHHHHHHHHHHCCC--cEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           47 PYPGAISTLEMLATTGA--KMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi--~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      ++||+.++|+.|+++|+  +++++||+++  ..+...++.+|+..+ |+.+++++
T Consensus       143 ~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~--~~~~~~l~~~gl~~~-fd~v~~~~  194 (282)
T 3nuq_A          143 PDIPLRNMLLRLRQSGKIDKLWLFTNAYK--NHAIRCLRLLGIADL-FDGLTYCD  194 (282)
T ss_dssp             CCHHHHHHHHHHHHSSSCSEEEEECSSCH--HHHHHHHHHHTCTTS-CSEEECCC
T ss_pred             cChhHHHHHHHHHhCCCCceEEEEECCCh--HHHHHHHHhCCcccc-cceEEEec
Confidence            47899999999999999  9999999754  345678888999988 79988653

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=98.74  E-value=1.4e-08  Score=73.46  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             HHHHHhhcCCcEEEEeccCcccCCCccCc-----------cHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           21 LRHIAETRRFKAWLLDQFGVLHDGKKPYP-----------GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        21 ~~~~~~~~~~~~~~~D~DGtL~~~~~~~p-----------ga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +.+...  .+++++||+||||.++...+.           .-..+|+.|+++|++++|+||+++  ..+...++.+|+..
T Consensus        42 l~~~~~--~ik~viFDlDGTL~Ds~~~~~~~~~~~~~~~~~d~~~L~~L~~~G~~l~I~T~~~~--~~~~~~l~~lgi~~  117 (211)
T 3ij5_A           42 VIQRAA--NIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVAIITGRRA--KLLEDRANTLGITH  117 (211)
T ss_dssp             HHHHHT--TCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHHHTCCE
T ss_pred             HHHHHh--CCCEEEEeCCCCEECCHHHHhhhhHHHHHhccchHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCch
Confidence            344444  799999999999987642110           011179999999999999999865  34678899999998


Q ss_pred             cCCCceeehHHHHHHHHHhcc
Q 033480           90 SLFAGAITSGELTHQYLLRLI  110 (118)
Q Consensus        90 ~~fd~iits~~v~~~~l~~~~  110 (118)
                      + |+.+-...+....++++..
T Consensus       118 ~-f~~~k~K~~~l~~~~~~lg  137 (211)
T 3ij5_A          118 L-YQGQSDKLVAYHELLATLQ  137 (211)
T ss_dssp             E-ECSCSSHHHHHHHHHHHHT
T ss_pred             h-hcccCChHHHHHHHHHHcC
Confidence            8 6888777676777777654

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=98.73  E-value=1.8e-08  Score=75.94  Aligned_cols=67  Identities=15%  Similarity=0.129  Sum_probs=50.7

Q ss_pred             hhhHHHHHhhcCCcEEEEeccCcccCC-C-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHH--HhCC
Q 033480           18 LNGLRHIAETRRFKAWLLDQFGVLHDG-K-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL--KSLG   86 (118)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~D~DGtL~~~-~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L--~~~g   86 (118)
                      .+.++.-...|.+|.+++|+||||++. . .+.|.+.++|++|+++|++++++|+++  ...+...+  +.++
T Consensus        15 ~~~~~~~~~~M~ikli~~DlDGTLl~~~~~~is~~~~~al~~l~~~Gi~v~iaTGR~--~~~~~~~~~~~~l~   85 (301)
T 2b30_A           15 DLKVEEALKGADIKLLLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRS--KVGILSAFGEENLK   85 (301)
T ss_dssp             --CHHHHTTTCCCCEEEEETBTTTBCCTTTCSCHHHHHHHHHHHHHTCEEEEECSSC--HHHHHHHHCHHHHH
T ss_pred             CeehhhccccccccEEEEECCCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHhhHHhhc
Confidence            345566555456899999999999987 4 466889999999999999999999865  34455555  5555

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=98.73  E-value=2.9e-08  Score=70.34  Aligned_cols=42  Identities=10%  Similarity=0.102  Sum_probs=35.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      ++||+.++|+.|+++|++++|+||+++  ..+...++.+|++..
T Consensus        93 ~~~g~~~~l~~l~~~g~~~~ivS~~~~--~~~~~~~~~~g~~~~  134 (232)
T 3fvv_A           93 LTVQAVDVVRGHLAAGDLCALVTATNS--FVTAPIARAFGVQHL  134 (232)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCCEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCCEE
Confidence            379999999999999999999999754  446678889998743

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=98.72  E-value=4.5e-08  Score=68.62  Aligned_cols=52  Identities=25%  Similarity=0.359  Sum_probs=44.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++++.
T Consensus        92 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  143 (233)
T 3s6j_A           92 ALPGAVELLETLDKENLKWCIATSGGI--DTATINLKALKLDIN-KINIVTRDDV  143 (233)
T ss_dssp             ECTTHHHHHHHHHHTTCCEEEECSSCH--HHHHHHHHTTTCCTT-SSCEECGGGS
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEeCCch--hhHHHHHHhcchhhh-hheeeccccC
Confidence            478999999999999999999999753  446788899999988 7999988653

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=98.72  E-value=1.3e-08  Score=73.98  Aligned_cols=50  Identities=26%  Similarity=0.306  Sum_probs=42.0

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++++.|+++|++++++|++.+    ....|+.+|+..+ ||.+++++++
T Consensus       117 ~~p~~~~ll~~Lk~~g~~i~i~~~~~~----~~~~L~~~gl~~~-Fd~i~~~~~~  166 (250)
T 4gib_A          117 ILPGIESLLIDVKSNNIKIGLSSASKN----AINVLNHLGISDK-FDFIADAGKC  166 (250)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT----HHHHHHHHTCGGG-CSEECCGGGC
T ss_pred             cchhHHHHHHHHHhcccccccccccch----hhhHhhhcccccc-cceeeccccc
Confidence            468999999999999999998876532    3467899999998 7999999865

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=98.71  E-value=1.4e-08  Score=75.14  Aligned_cols=66  Identities=18%  Similarity=0.166  Sum_probs=48.2

Q ss_pred             HHHHhhcCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           22 RHIAETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        22 ~~~~~~~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      ++....+.+|.++||+||||++... +.+.+.++|++|+++|++++++|+++..  .+...++.+|++.
T Consensus        13 ~~~~~~~~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~iaTGR~~~--~~~~~~~~l~~~~   79 (285)
T 3pgv_A           13 ENLYFQGMYQVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYI--DVGQIRDNLGIRS   79 (285)
T ss_dssp             --------CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHTTTCEEEEECSSCGG--GGHHHHHHHCSCC
T ss_pred             ccccccCcceEEEEeCcCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHH--HHHHHHHhcCCCc
Confidence            3444457899999999999998765 5688999999999999999999987533  3456677777753

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=98.71  E-value=1.9e-09  Score=74.90  Aligned_cols=52  Identities=23%  Similarity=0.222  Sum_probs=39.8

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh-CCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~-~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++++||+++..  +...++. +|+..+ |+.++++.++
T Consensus        92 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~--~~~~~~~~~~l~~~-f~~~~~~~~~  144 (206)
T 2b0c_A           92 LRPEVIAIMHKLREQGHRVVVLSNTNRLH--TTFWPEEYPEIRDA-ADHIYLSQDL  144 (206)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCT--TSCCGGGCHHHHHH-CSEEEEHHHH
T ss_pred             cCccHHHHHHHHHHCCCeEEEEECCChHH--HHHHHHhccChhhh-eeeEEEeccc
Confidence            46899999999999999999999987543  1233444 677777 6899988764

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=98.70  E-value=1.1e-08  Score=76.96  Aligned_cols=69  Identities=25%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             CCcEEEEeccCcccCCC---------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCC--ChHHHH
Q 033480           29 RFKAWLLDQFGVLHDGK---------------------------KPYPGAISTLEMLATTGAKMVVISNSSR--RASTTI   79 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~---------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r--~~~~~~   79 (118)
                      ...+++||+||||+.+.                           .++||+.++|+.|+++|++++|+||++.  ..+.+.
T Consensus        57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~  136 (262)
T 3ocu_A           57 KKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTI  136 (262)
T ss_dssp             CEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHH
T ss_pred             CCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHHH
Confidence            45689999999998662                           3689999999999999999999999874  456788


Q ss_pred             HHHHhCCCCCcCCC-ceeeh
Q 033480           80 DKLKSLGFDPSLFA-GAITS   98 (118)
Q Consensus        80 ~~L~~~gi~~~~fd-~iits   98 (118)
                      ..|+.+|++.+ ++ .++..
T Consensus       137 ~~L~~lGi~~~-~~~~Lilr  155 (262)
T 3ocu_A          137 DDMKRLGFNGV-EESAFYLK  155 (262)
T ss_dssp             HHHHHHTCSCC-SGGGEEEE
T ss_pred             HHHHHcCcCcc-cccceecc
Confidence            99999999864 22 56643

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=98.70  E-value=1.1e-08  Score=71.19  Aligned_cols=51  Identities=22%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.+ |+.|+++ ++++|+||+++  ..+...++.+|+..+ |+.+++++++
T Consensus        74 ~~~~~~~~-l~~l~~~-~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  124 (201)
T 2w43_A           74 KAYEDTKY-LKEISEI-AEVYALSNGSI--NEVKQHLERNGLLRY-FKGIFSAESV  124 (201)
T ss_dssp             EECGGGGG-HHHHHHH-SEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEGGGG
T ss_pred             ccCCChHH-HHHHHhC-CeEEEEeCcCH--HHHHHHHHHCCcHHh-CcEEEehhhc
Confidence            34688999 9999999 99999999853  346678899999988 7999987643

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=98.69  E-value=2.1e-08  Score=70.26  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=43.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.+++++.
T Consensus        86 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  137 (226)
T 3mc1_A           86 KVYDGIEALLSSLKDYGFHLVVATSKPT--VFSKQILEHFKLAFY-FDAIVGSSL  137 (226)
T ss_dssp             CBCTTHHHHHHHHHHHTCEEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEECT
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHhCCHhh-eeeeeccCC
Confidence            3578999999999999999999999743  446688899999988 799988654

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=98.69  E-value=3.7e-08  Score=71.06  Aligned_cols=58  Identities=12%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             CCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+|.++||+||||++... +.+...++|++|+++|++++++|+++  ...+...++.+|++
T Consensus         2 m~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v~i~TGR~--~~~~~~~~~~l~~~   60 (231)
T 1wr8_A            2 KIKAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNT--VQFAEAASILIGTS   60 (231)
T ss_dssp             CCCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEECSSC--HHHHHHHHHHHTCC
T ss_pred             ceeEEEEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--hhHHHHHHHHcCCC
Confidence            478999999999998765 56889999999999999999999864  33455666667765

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=98.69  E-value=2.7e-08  Score=70.69  Aligned_cols=53  Identities=30%  Similarity=0.396  Sum_probs=44.3

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ..++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++.+
T Consensus        82 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~gl~~~-f~~i~~~~~  134 (222)
T 2nyv_A           82 TKPYPEIPYTLEALKSKGFKLAVVSNKLE--ELSKKILDILNLSGY-FDLIVGGDT  134 (222)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHTTCGGG-CSEEECTTS
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHcCCHHH-heEEEecCc
Confidence            35689999999999999999999999754  345678899999888 799998753

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=98.69  E-value=2.1e-08  Score=72.71  Aligned_cols=61  Identities=16%  Similarity=0.182  Sum_probs=49.5

Q ss_pred             hcCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           27 TRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        27 ~~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +|.+|.+++|+||||++... +.|.+.++|++|+++|++++++|+++  ...+...++.++++.
T Consensus         2 ~mm~kli~~DlDGTLl~~~~~i~~~~~~~l~~l~~~g~~~~i~TGr~--~~~~~~~~~~l~~~~   63 (227)
T 1l6r_A            2 SHMIRLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNV--IPVVYALKIFLGING   63 (227)
T ss_dssp             -CCCCEEEEEHHHHSBCTTSCBCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHHTCCS
T ss_pred             CcceEEEEEECCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCC--cHHHHHHHHHhCCCC
Confidence            35689999999999998665 56889999999999999999999864  345667777777753

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=98.68  E-value=2.5e-08  Score=71.93  Aligned_cols=50  Identities=26%  Similarity=0.429  Sum_probs=41.8

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      +||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++++
T Consensus       116 ~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~gl~~~-f~~~~~~~~  165 (243)
T 2hsz_A          116 YPNVKETLEALKAQGYILAVVTNKPT--KHVQPILTAFGIDHL-FSEMLGGQS  165 (243)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHTTCGGG-CSEEECTTT
T ss_pred             CCCHHHHHHHHHHCCCEEEEEECCcH--HHHHHHHHHcCchhe-EEEEEeccc
Confidence            48889999999999999999999754  346678899999888 798887754

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=98.68  E-value=6.6e-08  Score=67.95  Aligned_cols=51  Identities=20%  Similarity=0.323  Sum_probs=43.0

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++ ++++++||+++  ..+...++.+|+..+ |+.+++++++
T Consensus       104 ~~~~~~~~l~~l~~~-~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  154 (238)
T 3ed5_A          104 LIDGAFDLISNLQQQ-FDLYIVTNGVS--HTQYKRLRDSGLFPF-FKDIFVSEDT  154 (238)
T ss_dssp             BCTTHHHHHHHHHTT-SEEEEEECSCH--HHHHHHHHHTTCGGG-CSEEEEGGGT
T ss_pred             CCccHHHHHHHHHhc-CeEEEEeCCCH--HHHHHHHHHcChHhh-hheEEEeccc
Confidence            578999999999999 99999999754  446678899999988 7999987653

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=98.68  E-value=5.4e-08  Score=68.29  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             CCcEEEEeccCcccCCCccCccH-----------HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHH--hCCCCCcCCCce
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGA-----------ISTLEMLATTGAKMVVISNSSRRASTTIDKLK--SLGFDPSLFAGA   95 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga-----------~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~--~~gi~~~~fd~i   95 (118)
                      ++|.+++|+||||+++...+...           ...|++|+++|++++|+||+ ..   +...++  .+|+. + |...
T Consensus         8 ~ikliv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~~~L~~Lk~~Gi~~~I~Tg~-~~---~~~~l~~l~lgi~-~-~~g~   81 (168)
T 3ewi_A            8 EIKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISER-AC---SKQTLSALKLDCK-T-EVSV   81 (168)
T ss_dssp             CCCEEEEECCCCCSCSCCBCCSSCCCEEEEEHHHHHHHHHHHHTTCEEEEECSS-CC---CHHHHHTTCCCCC-E-ECSC
T ss_pred             cCcEEEEeCccceECCcEEEcCCCCEEEEEecCcHHHHHHHHHCCCEEEEEeCc-HH---HHHHHHHhCCCcE-E-EECC
Confidence            89999999999999886544221           24799999999999999998 32   346677  67876 5 4554


Q ss_pred             eehHHHHHHHHHhcc
Q 033480           96 ITSGELTHQYLLRLI  110 (118)
Q Consensus        96 its~~v~~~~l~~~~  110 (118)
                      -...+....++++..
T Consensus        82 ~~K~~~l~~~~~~~g   96 (168)
T 3ewi_A           82 SDKLATVDEWRKEMG   96 (168)
T ss_dssp             SCHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHcC
Confidence            455555666666654

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=98.67  E-value=4.3e-08  Score=72.15  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=48.3

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      |++|.++||+||||++... +.+...++|++|+++|+.++++|+++  ...+...++.+|++
T Consensus         4 M~~kli~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~~~~~   63 (290)
T 3dnp_A            4 MSKQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRH--FRSAQKIAKSLKLD   63 (290)
T ss_dssp             --CCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEBCSSC--HHHHHHHHHHTTCC
T ss_pred             CcceEEEEcCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHcCCC
Confidence            5789999999999998665 56889999999999999999999754  44556777778876

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=98.67  E-value=2.6e-08  Score=70.43  Aligned_cols=51  Identities=16%  Similarity=0.324  Sum_probs=43.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++++++
T Consensus       105 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  155 (237)
T 4ex6_A          105 LYPGVLEGLDRLSAAGFRLAMATSKVE--KAARAIAELTGLDTR-LTVIAGDDS  155 (237)
T ss_dssp             BCTTHHHHHHHHHHTTEEEEEECSSCH--HHHHHHHHHHTGGGT-CSEEECTTT
T ss_pred             cCCCHHHHHHHHHhCCCcEEEEcCCCh--HHHHHHHHHcCchhh-eeeEEeCCC
Confidence            578899999999999999999999754  346678888999888 799998865

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=98.66  E-value=3.1e-08  Score=73.37  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=48.9

Q ss_pred             HHHHhhcCCcEEEEeccCcccCCCc--cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           22 RHIAETRRFKAWLLDQFGVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        22 ~~~~~~~~~~~~~~D~DGtL~~~~~--~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++...+++|.++||+||||++...  +.+.+.++|++|+++|+.++++|+++  ...+...++.+++.
T Consensus        13 ~~~~~~~~~kli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~v~iaTGR~--~~~~~~~~~~l~~~   79 (283)
T 3dao_A           13 ENLYFQGMIKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQ--FSSEFKLFAPIKHK   79 (283)
T ss_dssp             ------CCCCEEEECCBTTTBSTTCSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHTGGGGGG
T ss_pred             hhhhhccCceEEEEeCcCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHcCCC
Confidence            4555567899999999999997654  66999999999999999999999754  44556666766653

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=98.66  E-value=5e-08  Score=69.06  Aligned_cols=51  Identities=24%  Similarity=0.441  Sum_probs=40.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCC--CceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~f--d~iits~~v  101 (118)
                      ++||+.++|+.|+++|++++++||+++..  +...++. |+..+ |  +.+++++++
T Consensus       109 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~--~~~~l~~-~l~~~-f~~~~~~~~~~~  161 (247)
T 3dv9_A          109 RMPGALEVLTKIKSEGLTPMVVTGSGQTS--LLDRLNH-NFPGI-FQANLMVTAFDV  161 (247)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSCC-----CHHHHHH-HSTTT-CCGGGEECGGGC
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEcCCchHH--HHHHHHh-hHHHh-cCCCeEEecccC
Confidence            45899999999999999999999986532  4567777 88887 8  778888753

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=98.65  E-value=5.6e-08  Score=69.94  Aligned_cols=52  Identities=13%  Similarity=0.047  Sum_probs=40.8

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+.|+.++++++
T Consensus       112 ~~~~~~~~l~~l~~~g~~~~i~tn~~~--~~~~~~l~~~~~~~~~~~~~~~~~~  163 (277)
T 3iru_A          112 LIPGWKEVFDKLIAQGIKVGGNTGYGP--GMMAPALIAAKEQGYTPASTVFATD  163 (277)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHHHTTCCCSEEECGGG
T ss_pred             cCcCHHHHHHHHHHcCCeEEEEeCCch--HHHHHHHHhcCcccCCCceEecHHh
Confidence            468899999999999999999999754  3455677777776653588888765

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=98.65  E-value=5.2e-08  Score=69.51  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=41.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCC--CceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~f--d~iits~~  100 (118)
                      ++||+.++|++|+++|++++++||+++.  .+...++. |+..+ |  |.++++++
T Consensus       110 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~--~~~~~l~~-~l~~~-f~~d~i~~~~~  161 (243)
T 3qxg_A          110 RMPGAWELLQKVKSEGLTPMVVTGSGQL--SLLERLEH-NFPGM-FHKELMVTAFD  161 (243)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECCCCCH--HHHTTHHH-HSTTT-CCGGGEECTTT
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEeCCcHH--HHHHHHHH-hHHHh-cCcceEEeHHh
Confidence            4688999999999999999999998653  35567777 99888 8  77888765

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=98.64  E-value=3.3e-08  Score=71.85  Aligned_cols=58  Identities=21%  Similarity=0.177  Sum_probs=45.2

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi   87 (118)
                      |++|.++||+||||++... +.+...++|++++++|++++++|+++..  .+...++.+++
T Consensus         1 M~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~~aTGR~~~--~~~~~~~~l~~   59 (258)
T 2pq0_A            1 MGRKIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATGRAPF--MFEHVRKQLGI   59 (258)
T ss_dssp             -CCCEEEECTBTTTBCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCGG--GSHHHHHHHTC
T ss_pred             CCceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCEEEEECCCChH--HHHHHHHhcCC
Confidence            4679999999999998665 5678999999999999999999987532  23455555554

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=98.64  E-value=5.9e-08  Score=68.14  Aligned_cols=50  Identities=32%  Similarity=0.389  Sum_probs=41.9

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|+.|+ +|++++++||+++  ..+...++.+|+..+ |+.++++++
T Consensus       108 ~~~~~~~~l~~l~-~g~~~~i~sn~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  157 (240)
T 3qnm_A          108 LMPHAKEVLEYLA-PQYNLYILSNGFR--ELQSRKMRSAGVDRY-FKKIILSED  157 (240)
T ss_dssp             BSTTHHHHHHHHT-TTSEEEEEECSCH--HHHHHHHHHHTCGGG-CSEEEEGGG
T ss_pred             cCccHHHHHHHHH-cCCeEEEEeCCch--HHHHHHHHHcChHhh-ceeEEEecc
Confidence            4788999999999 9999999999753  345678888999888 799998865

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=98.64  E-value=7.2e-08  Score=69.52  Aligned_cols=50  Identities=28%  Similarity=0.397  Sum_probs=41.7

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+  |++++++||+++  ..+...++.+|+..+ |+.+++++++
T Consensus        94 ~~~~~~~~l~~l~--g~~~~i~t~~~~--~~~~~~l~~~gl~~~-f~~~~~~~~~  143 (253)
T 1qq5_A           94 PYPDAAQCLAELA--PLKRAILSNGAP--DMLQALVANAGLTDS-FDAVISVDAK  143 (253)
T ss_dssp             BCTTHHHHHHHHT--TSEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEGGGG
T ss_pred             CCccHHHHHHHHc--CCCEEEEeCcCH--HHHHHHHHHCCchhh-ccEEEEcccc
Confidence            4689999999998  999999999854  345678899999988 7999988764

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=98.64  E-value=6.8e-08  Score=66.83  Aligned_cols=52  Identities=19%  Similarity=0.331  Sum_probs=42.9

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++| +++++||+++  ..+...++.+|+..+ |+.++++.++
T Consensus        86 ~~~~~~~~~l~~l~~~g-~~~i~s~~~~--~~~~~~l~~~~~~~~-f~~~~~~~~~  137 (200)
T 3cnh_A           86 QPRPEVLALARDLGQRY-RMYSLNNEGR--DLNEYRIRTFGLGEF-LLAFFTSSAL  137 (200)
T ss_dssp             CBCHHHHHHHHHHTTTS-EEEEEECCCH--HHHHHHHHHHTGGGT-CSCEEEHHHH
T ss_pred             ccCccHHHHHHHHHHcC-CEEEEeCCcH--HHHHHHHHhCCHHHh-cceEEeeccc
Confidence            36788999999999999 9999999754  345677888999888 7999988764

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=3.1e-08  Score=69.05  Aligned_cols=50  Identities=30%  Similarity=0.399  Sum_probs=41.2

Q ss_pred             cCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           47 PYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      ++||+.++++.|+++| ++++++||+++  ..+...++.+|+..+ |+.++++.
T Consensus       106 ~~~~~~~~l~~l~~~g~~~~~i~t~~~~--~~~~~~l~~~~~~~~-f~~~~~~~  156 (234)
T 3ddh_A          106 LLPGVKETLKTLKETGKYKLVVATKGDL--LDQENKLERSGLSPY-FDHIEVMS  156 (234)
T ss_dssp             BCTTHHHHHHHHHHHCCCEEEEEEESCH--HHHHHHHHHHTCGGG-CSEEEEES
T ss_pred             cCccHHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHhCcHhh-hheeeecC
Confidence            4688899999999999 99999998743  345678889999888 79888753

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=98.63  E-value=7e-09  Score=72.77  Aligned_cols=48  Identities=8%  Similarity=0.185  Sum_probs=37.7

Q ss_pred             ccCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           46 KPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      .++||+.++|++|+++ |++++|+||+++..  +...++.+|+    ||.+++++
T Consensus        73 ~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~--~~~~l~~~gl----f~~i~~~~  121 (193)
T 2i7d_A           73 EPIPGALDAVREMNDLPDTQVFICTSPLLKY--HHCVGEKYRW----VEQHLGPQ  121 (193)
T ss_dssp             CBCTTHHHHHHHHHTSTTEEEEEEECCCSSC--TTTHHHHHHH----HHHHHCHH
T ss_pred             ccCcCHHHHHHHHHhCCCCeEEEEeCCChhh--HHHHHHHhCc----hhhhcCHH
Confidence            4689999999999999 99999999987543  3456677776    46777653

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=98.63  E-value=3.6e-08  Score=72.05  Aligned_cols=56  Identities=18%  Similarity=0.095  Sum_probs=45.9

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +|.+++|+||||+ ....++.+.++|++|+++|++++++|+++  ...+...++.+++.
T Consensus         2 ikli~~DlDGTLl-~~~~~~~~~~~l~~l~~~g~~~~i~Tgr~--~~~~~~~~~~~~~~   57 (249)
T 2zos_A            2 IRLIFLDIDKTLI-PGYEPDPAKPIIEELKDMGFEIIFNSSKT--RAEQEYYRKELEVE   57 (249)
T ss_dssp             EEEEEECCSTTTC-TTSCSGGGHHHHHHHHHTTEEEEEBCSSC--HHHHHHHHHHHTCC
T ss_pred             ccEEEEeCCCCcc-CCCCcHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHcCCC
Confidence            5899999999999 66566779999999999999999999865  34456667777764

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=98.63  E-value=3.3e-08  Score=71.21  Aligned_cols=47  Identities=17%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             cCCcEEEEeccCcccCCC-----------------------------------ccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           28 RRFKAWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~-----------------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      +.+++++||+||||++..                                   .+.|++.++|++|+++|++++|+||++
T Consensus        35 ~~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~  114 (211)
T 2b82_A           35 RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRS  114 (211)
T ss_dssp             CCCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSC
T ss_pred             CCCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            458999999999999742                                   135699999999999999999999987


Q ss_pred             CC
Q 033480           73 RR   74 (118)
Q Consensus        73 r~   74 (118)
                      +.
T Consensus       115 ~~  116 (211)
T 2b82_A          115 PT  116 (211)
T ss_dssp             CC
T ss_pred             HH
Confidence            43

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=98.63  E-value=3.3e-08  Score=72.80  Aligned_cols=58  Identities=22%  Similarity=0.227  Sum_probs=44.4

Q ss_pred             cCCcEEEEeccCcccCCCccC-ccH-HHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKKPY-PGA-ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~-pga-~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi   87 (118)
                      |.+|.+++|+||||++....+ +.. .++|++|+++|++++++|+++  ...+...++.+++
T Consensus         1 m~~kli~~DlDGTLl~~~~~i~~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~   60 (271)
T 1rlm_A            1 MAVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQ--YYQLISFFPELKD   60 (271)
T ss_dssp             -CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHHHTCEEEEECSSC--HHHHGGGCTTTTT
T ss_pred             CCccEEEEeCCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHHhcCC
Confidence            468999999999999877655 553 899999999999999999864  3344445555553

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=98.62  E-value=2.6e-08  Score=69.50  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      +.||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.++
T Consensus        76 ~~~~~~~~l~~l~~~g~~~~i~S~~~~--~~~~~~l~~~gl~~~-f~~~~  122 (217)
T 3m1y_A           76 LFEGALELVSALKEKNYKVVCFSGGFD--LATNHYRDLLHLDAA-FSNTL  122 (217)
T ss_dssp             BCBTHHHHHHHHHTTTEEEEEEEEEEH--HHHHHHHHHHTCSEE-EEEEE
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEcCCch--hHHHHHHHHcCcchh-cccee
Confidence            578999999999999999999999754  345678888999887 68776

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=98.61  E-value=9.9e-08  Score=67.40  Aligned_cols=46  Identities=22%  Similarity=0.246  Sum_probs=37.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC--cCCCce
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP--SLFAGA   95 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~--~~fd~i   95 (118)
                      ++||+.++|+.|+++|++++|+||+++  ..+...++.+|+..  + |+.+
T Consensus        87 ~~~g~~~~l~~L~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~~~-f~~~  134 (225)
T 1nnl_A           87 LTPGIRELVSRLQERNVQVFLISGGFR--SIVEHVASKLNIPATNV-FANR  134 (225)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCCGGGE-EEEC
T ss_pred             CCccHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHHHcCCCcccE-Eeee
Confidence            468999999999999999999999754  34668889999973  4 4544

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=98.61  E-value=8.7e-08  Score=71.06  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             CCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+|.++||+||||++... +.+...++|++|+++|++++++|+++  ...+...++.++++
T Consensus         3 mikli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~~   61 (288)
T 1nrw_A            3 AMKLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRA--HFDVMSIFEPLGIK   61 (288)
T ss_dssp             -CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHGGGTCC
T ss_pred             ceEEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHcCCC
Confidence            489999999999998765 56889999999999999999999764  44566677777765

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=98.60  E-value=9.1e-08  Score=65.42  Aligned_cols=50  Identities=18%  Similarity=0.367  Sum_probs=41.9

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++|++.++|+.|+++|++++++||++.   .+...++.+|+..+ |+.++++++
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~~---~~~~~l~~~~~~~~-f~~~~~~~~  132 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRND---QVLEILEKTSIAAY-FTEVVTSSS  132 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCT---HHHHHHHHTTCGGG-EEEEECGGG
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCcH---HHHHHHHHcCCHhh-eeeeeeccc
Confidence            568899999999999999999998753   35678899999888 788888754

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=98.60  E-value=8.9e-08  Score=67.20  Aligned_cols=46  Identities=35%  Similarity=0.507  Sum_probs=39.4

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+++ ++++++||++..       ++.+|+..+ |+.++++++.
T Consensus       106 ~~~~~~~~l~~l~~~-~~~~i~t~~~~~-------l~~~~l~~~-f~~~~~~~~~  151 (230)
T 3vay_A          106 IFPEVQPTLEILAKT-FTLGVITNGNAD-------VRRLGLADY-FAFALCAEDL  151 (230)
T ss_dssp             BCTTHHHHHHHHHTT-SEEEEEESSCCC-------GGGSTTGGG-CSEEEEHHHH
T ss_pred             cCcCHHHHHHHHHhC-CeEEEEECCchh-------hhhcCcHHH-eeeeEEcccc
Confidence            678999999999988 999999998653       688999988 7999988764

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=98.60  E-value=5.1e-08  Score=69.30  Aligned_cols=51  Identities=22%  Similarity=0.213  Sum_probs=43.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|++|+++|++++++||+++  ..+...++.+|+..+ |+.++++++
T Consensus       111 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  161 (240)
T 3sd7_A          111 IYENMKEILEMLYKNGKILLVATSKPT--VFAETILRYFDIDRY-FKYIAGSNL  161 (240)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEECT
T ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCcH--HHHHHHHHHcCcHhh-EEEEEeccc
Confidence            578999999999999999999999743  446688899999988 799987764

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=98.60  E-value=5.4e-08  Score=74.31  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      .++||+.++|++|+++|++++|+||+.+  ..+...++.+|+..+ |+.++.
T Consensus       179 ~l~pg~~e~L~~Lk~~G~~v~IvSn~~~--~~~~~~l~~lgl~~~-f~~~l~  227 (317)
T 4eze_A          179 TLSPGLLTILPVIKAKGFKTAIISGGLD--IFTQRLKARYQLDYA-FSNTVE  227 (317)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHTCSEE-EEECEE
T ss_pred             EECcCHHHHHHHHHhCCCEEEEEeCccH--HHHHHHHHHcCCCeE-EEEEEE
Confidence            3689999999999999999999999754  446688899999887 676653

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=98.58  E-value=5.9e-08  Score=71.36  Aligned_cols=45  Identities=13%  Similarity=0.054  Sum_probs=40.5

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      |.+|.+++|+||||++... +.+...++|++|+++|++++++|+++
T Consensus         2 M~~kli~~DlDGTLl~~~~~i~~~~~~~l~~l~~~g~~~~iaTGR~   47 (246)
T 3f9r_A            2 MKRVLLLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGGSD   47 (246)
T ss_dssp             CCSEEEEECSBTTTBSTTSCCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCceEEEEeCcCCcCCCCCccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            6799999999999998764 56889999999999999999999864

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=98.58  E-value=6.2e-08  Score=69.71  Aligned_cols=53  Identities=25%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCc-eeehHHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG-AITSGELT  102 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~-iits~~v~  102 (118)
                      ++||+.++|++|+++|++++++||+++  ..+...++.+|+..+ |+. +++++++.
T Consensus       111 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~i~~~~~~~  164 (259)
T 4eek_A          111 AIEGAAETLRALRAAGVPFAIGSNSER--GRLHLKLRVAGLTEL-AGEHIYDPSWVG  164 (259)
T ss_dssp             ECTTHHHHHHHHHHHTCCEEEECSSCH--HHHHHHHHHTTCHHH-HCSCEECGGGGT
T ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHhcChHhh-ccceEEeHhhcC
Confidence            478899999999999999999999754  346688899999888 798 88876653

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=98.56  E-value=4.4e-08  Score=69.54  Aligned_cols=53  Identities=13%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCCh-HHHHHHH---HhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKL---KSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~~~~~~L---~~~gi~~~~fd~iits~~v  101 (118)
                      +.||+.++|+.|+++ ++++|+||+++.. ..+.+.|   +.+|+..+ ||.++++.++
T Consensus       113 ~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~-fd~i~~~~~~  169 (229)
T 4dcc_A          113 IPTYKLDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDY-FEKTYLSYEM  169 (229)
T ss_dssp             CCHHHHHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHHHH-CSEEEEHHHH
T ss_pred             ccHHHHHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHHHh-CCEEEeeccc
Confidence            358999999999988 9999999986432 1222555   77899888 7999998765

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=98.55  E-value=1.4e-07  Score=66.24  Aligned_cols=51  Identities=25%  Similarity=0.375  Sum_probs=43.0

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++|++.++|+.|+++ ++++++||+++  ..+...++.+|+..+ |+.++++++.
T Consensus       101 ~~~~~~~~l~~l~~~-~~~~i~t~~~~--~~~~~~l~~~~~~~~-f~~~~~~~~~  151 (234)
T 3u26_A          101 LYPEVVEVLKSLKGK-YHVGMITDSDT--EQAMAFLDALGIKDL-FDSITTSEEA  151 (234)
T ss_dssp             BCTTHHHHHHHHTTT-SEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEHHHH
T ss_pred             cCcCHHHHHHHHHhC-CcEEEEECCCH--HHHHHHHHHcCcHHH-cceeEecccc
Confidence            578899999999999 99999999754  346678899999988 7999988764

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=98.55  E-value=3.9e-08  Score=70.69  Aligned_cols=69  Identities=13%  Similarity=-0.002  Sum_probs=57.6

Q ss_pred             CCcEEEEeccCcccCCC------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           29 RFKAWLLDQFGVLHDGK------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      +.+.+++|+||||++..                        ...||+.++|++|++. ++++|+||+++.  .+...++.
T Consensus        27 ~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~-~~i~I~Tss~~~--~a~~vl~~  103 (195)
T 2hhl_A           27 GKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL-FECVLFTASLAK--YADPVADL  103 (195)
T ss_dssp             TCCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHH--HHHHHHHH
T ss_pred             CCeEEEEccccceEcccccCCCCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC-CeEEEEcCCCHH--HHHHHHHH
Confidence            78999999999998641                        2479999999999998 999999998653  35678888


Q ss_pred             CCCCCcCCCceeehHHH
Q 033480           85 LGFDPSLFAGAITSGEL  101 (118)
Q Consensus        85 ~gi~~~~fd~iits~~v  101 (118)
                      +++..+ |+.+++.+++
T Consensus       104 ld~~~~-f~~~l~rd~~  119 (195)
T 2hhl_A          104 LDRWGV-FRARLFRESC  119 (195)
T ss_dssp             HCCSSC-EEEEECGGGC
T ss_pred             hCCccc-EEEEEEcccc
Confidence            999887 7888887664

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=98.51  E-value=1.4e-07  Score=68.55  Aligned_cols=46  Identities=26%  Similarity=0.359  Sum_probs=40.6

Q ss_pred             cCCcEEEEeccCcccC-CC-ccCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480           28 RRFKAWLLDQFGVLHD-GK-KPYPGAISTLEMLATTGAKMVVISNSSR   73 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~-~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r   73 (118)
                      +.+|.++||+||||++ .. .+.+...++|++++++|++++++|+++.
T Consensus        10 ~miKli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~   57 (268)
T 3r4c_A           10 HMIKVLLLDVDGTLLSFETHKVSQSSIDALKKVHDSGIKIVIATGRAA   57 (268)
T ss_dssp             SCCCEEEECSBTTTBCTTTCSCCHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CceEEEEEeCCCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence            3689999999999998 43 5678999999999999999999998763

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=98.50  E-value=1.6e-07  Score=67.20  Aligned_cols=50  Identities=18%  Similarity=0.174  Sum_probs=39.9

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh-CCCCCcCCCceeehH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSG   99 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~-~gi~~~~fd~iits~   99 (118)
                      ++||+.++|+.|+++|++++++||+++  ..+...+.. +|+..+ |+.+++++
T Consensus       113 ~~~~~~~~l~~l~~~g~~~~i~sn~~~--~~~~~~l~~~~~l~~~-f~~~~~~~  163 (250)
T 3l5k_A          113 LMPGAEKLIIHLRKHGIPFALATSSRS--ASFDMKTSRHKEFFSL-FSHIVLGD  163 (250)
T ss_dssp             BCTTHHHHHHHHHHTTCCEEEECSCCH--HHHHHHTTTCHHHHTT-SSCEECTT
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCCCH--HHHHHHHHhccCHHhh-eeeEEecc
Confidence            578999999999999999999999753  334455654 578777 79998887

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=98.50  E-value=1.1e-07  Score=71.05  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=45.7

Q ss_pred             CCccchhhHHHHHhhcCCcEEEEeccCcccCCCccC-cc-HHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480           13 HLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPY-PG-AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (118)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~D~DGtL~~~~~~~-pg-a~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi   87 (118)
                      |..+..++.+.--.+|.+|.++||+||||++....+ +. ..++|++|+++|+.++++|+.+  ...+...++.+++
T Consensus        20 ~~~~~~~~~~~~~~~M~iKli~fDlDGTLld~~~~i~~~~~~~al~~l~~~G~~~~iaTGR~--~~~~~~~~~~l~~   94 (304)
T 3l7y_A           20 HMASMTGGQQMGRGSMSVKVIATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVASSNP--YRQLREHFPDCHE   94 (304)
T ss_dssp             ----------------CCSEEEECCCCCCSCTTSCCCHHHHHHHHHHHHHTTCEEEEECSSC--HHHHHTTCTTTGG
T ss_pred             chhcccCccCCCCCceeeEEEEEeCCCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHhCC
Confidence            334444444433344679999999999999887655 55 6899999999999999999754  3445555555554

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=98.49  E-value=1.5e-07  Score=68.28  Aligned_cols=58  Identities=26%  Similarity=0.291  Sum_probs=46.9

Q ss_pred             CCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+|.++||+||||++... +.+...++|++++++|+.++++|+++..  .+...++.++++
T Consensus         4 M~kli~fDlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~--~~~~~~~~~~~~   62 (274)
T 3fzq_A            4 LYKLLILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTGRSMG--TIQDDVLSLGVD   62 (274)
T ss_dssp             CCCEEEECSBTTTBBTTTBCCHHHHHHHHHHHHTTCEEEEECSSCTT--TSCHHHHTTCCS
T ss_pred             cceEEEEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEEEEEeCCChH--HHHHHHHHcCCC
Confidence            379999999999998775 5688999999999999999999987643  234566667654

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=98.48  E-value=1.7e-07  Score=65.22  Aligned_cols=51  Identities=12%  Similarity=0.137  Sum_probs=41.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh------CCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS------LGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~------~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|++ |++++++||+++  ..+...++.      +|+..+ |+.+++++++
T Consensus        90 ~~~~~~~~l~~l~~-g~~~~i~t~~~~--~~~~~~~~~l~~~~~~~l~~~-f~~~~~~~~~  146 (211)
T 2i6x_A           90 ISAEKFDYIDSLRP-DYRLFLLSNTNP--YVLDLAMSPRFLPSGRTLDSF-FDKVYASCQM  146 (211)
T ss_dssp             ECHHHHHHHHHHTT-TSEEEEEECCCH--HHHHHHTSTTSSTTCCCGGGG-SSEEEEHHHH
T ss_pred             cChHHHHHHHHHHc-CCeEEEEeCCCH--HHHHHHHhhhccccccCHHHH-cCeEEeeccc
Confidence            46889999999988 999999999754  335567777      799888 7999988764

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=98.48  E-value=2.8e-07  Score=64.45  Aligned_cols=49  Identities=22%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|++ |++++++||+++  ..+...++.  +..+ ||.++++.++
T Consensus       100 ~~~~~~~~l~~l~~-~~~~~i~tn~~~--~~~~~~l~~--l~~~-fd~i~~~~~~  148 (240)
T 3smv_A          100 AFPDTVEALQYLKK-HYKLVILSNIDR--NEFKLSNAK--LGVE-FDHIITAQDV  148 (240)
T ss_dssp             BCTTHHHHHHHHHH-HSEEEEEESSCH--HHHHHHHTT--TCSC-CSEEEEHHHH
T ss_pred             CCCcHHHHHHHHHh-CCeEEEEeCCCh--hHHHHHHHh--cCCc-cCEEEEcccc
Confidence            57899999999998 899999999754  334556666  4456 7999999865

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.47  E-value=4.6e-07  Score=62.75  Aligned_cols=50  Identities=24%  Similarity=0.321  Sum_probs=41.0

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .|++.++++.|+++|++++++||+++  ..+...++.+|+..+ |+.++++++
T Consensus        91 ~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~  140 (225)
T 3d6j_A           91 FPDTLPTLTHLKKQGIRIGIISTKYR--FRILSFLRNHMPDDW-FDIIIGGED  140 (225)
T ss_dssp             CTTHHHHHHHHHHHTCEEEEECSSCH--HHHHHHHHTSSCTTC-CSEEECGGG
T ss_pred             CcCHHHHHHHHHHCCCeEEEEECCCH--HHHHHHHHHcCchhh-eeeeeehhh
Confidence            67889999999999999999998743  345677888999887 688887653

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=98.45  E-value=2.7e-07  Score=67.82  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=45.6

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +|.+++|+||||++... +.+.+.++|++ +++|++++++|+++  ...+...++.+|++
T Consensus         2 ikli~~DlDGTLl~~~~~i~~~~~~al~~-~~~Gi~v~iaTGR~--~~~~~~~~~~l~~~   58 (268)
T 1nf2_A            2 YRVFVFDLDGTLLNDNLEISEKDRRNIEK-LSRKCYVVFASGRM--LVSTLNVEKKYFKR   58 (268)
T ss_dssp             BCEEEEECCCCCSCTTSCCCHHHHHHHHH-HTTTSEEEEECSSC--HHHHHHHHHHHSSS
T ss_pred             ccEEEEeCCCcCCCCCCccCHHHHHHHHH-HhCCCEEEEECCCC--hHHHHHHHHHhCCC
Confidence            68999999999998765 55889999999 99999999999864  34456667777764

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=98.43  E-value=1.2e-07  Score=67.17  Aligned_cols=69  Identities=10%  Similarity=-0.027  Sum_probs=56.8

Q ss_pred             CCcEEEEeccCcccCCC------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           29 RFKAWLLDQFGVLHDGK------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      +.+.+++|+|+||++..                        .+.||+.++|++|.+. +.++|.||+++.  .+...++.
T Consensus        14 ~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~-~~i~I~T~~~~~--~a~~vl~~   90 (181)
T 2ght_A           14 DKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAK--YADPVADL   90 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHH--HHHHHHHH
T ss_pred             CCeEEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC-CCEEEEcCCCHH--HHHHHHHH
Confidence            67899999999997641                        3589999999999997 999999998653  35577888


Q ss_pred             CCCCCcCCCceeehHHH
Q 033480           85 LGFDPSLFAGAITSGEL  101 (118)
Q Consensus        85 ~gi~~~~fd~iits~~v  101 (118)
                      ++...+ |+.+++.+++
T Consensus        91 ld~~~~-f~~~~~rd~~  106 (181)
T 2ght_A           91 LDKWGA-FRARLFRESC  106 (181)
T ss_dssp             HCTTCC-EEEEECGGGS
T ss_pred             HCCCCc-EEEEEeccCc
Confidence            888887 7888887654

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=98.43  E-value=3.5e-07  Score=63.70  Aligned_cols=49  Identities=20%  Similarity=0.341  Sum_probs=39.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCC-Cceeeh
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF-AGAITS   98 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~f-d~iits   98 (118)
                      .++||+.++|+.|+++ ++++|+||+++  ..+...++.+|+..+ | +.++++
T Consensus        69 ~~~~g~~~~l~~l~~~-~~~~i~s~~~~--~~~~~~l~~~gl~~~-f~~~~~~~  118 (206)
T 1rku_A           69 KPLEGAVEFVDWLRER-FQVVILSDTFY--EFSQPLMRQLGFPTL-LCHKLEID  118 (206)
T ss_dssp             CCCTTHHHHHHHHHTT-SEEEEEEEEEH--HHHHHHHHHTTCCCE-EEEEEEEC
T ss_pred             CCCccHHHHHHHHHhc-CcEEEEECChH--HHHHHHHHHcCCcce-ecceeEEc
Confidence            4579999999999999 99999999754  346678899999887 6 355554

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=98.41  E-value=1.6e-07  Score=65.30  Aligned_cols=51  Identities=22%  Similarity=0.389  Sum_probs=42.2

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .++||+.++|+.|+++ ++++++||+++  ..+...++.+|+..+ |+.++++++
T Consensus        83 ~~~~~~~~~l~~l~~~-~~~~i~s~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  133 (209)
T 2hdo_A           83 ELYPGITSLFEQLPSE-LRLGIVTSQRR--NELESGMRSYPFMMR-MAVTISADD  133 (209)
T ss_dssp             EECTTHHHHHHHSCTT-SEEEEECSSCH--HHHHHHHTTSGGGGG-EEEEECGGG
T ss_pred             CcCCCHHHHHHHHHhc-CcEEEEeCCCH--HHHHHHHHHcChHhh-ccEEEecCc
Confidence            3578999999999999 99999999753  346678899999888 788888764

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=98.37  E-value=3.2e-07  Score=66.55  Aligned_cols=44  Identities=20%  Similarity=0.126  Sum_probs=38.9

Q ss_pred             cCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      |+++.+++|+||||++... +-+.+.++|++|+++ ++++++|+++
T Consensus         4 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~-i~v~iaTGR~   48 (246)
T 2amy_A            4 PGPALCLFDVDGTLTAPRQKITKEMDDFLQKLRQK-IKIGVVGGSD   48 (246)
T ss_dssp             CCSEEEEEESBTTTBCTTSCCCHHHHHHHHHHTTT-SEEEEECSSC
T ss_pred             CCceEEEEECCCCcCCCCcccCHHHHHHHHHHHhC-CeEEEEcCCC
Confidence            6789999999999998765 558899999999999 9999999864

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=98.37  E-value=3.6e-07  Score=66.43  Aligned_cols=53  Identities=17%  Similarity=0.066  Sum_probs=41.2

Q ss_pred             CcEEEEeccCcccCC------CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480           30 FKAWLLDQFGVLHDG------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~   85 (118)
                      ++.+++|+||||++.      ..+.|.+.++|++|+++| +++++|+++  ...+...++.+
T Consensus         1 ikli~~DlDGTLl~~~~~~~~~~i~~~~~~al~~l~~~g-~v~iaTGR~--~~~~~~~~~~l   59 (239)
T 1u02_A            1 MSLIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERF-DTYIVTGRS--PEEISRFLPLD   59 (239)
T ss_dssp             -CEEEEECBTTTBCCCSCGGGCCCCHHHHHHHHHHHHHS-EEEEECSSC--HHHHHHHSCSS
T ss_pred             CeEEEEecCCCCcCCCCCcccCCCCHHHHHHHHHHhcCC-CEEEEeCCC--HHHHHHHhccc
Confidence            478999999999973      356689999999999999 999999764  34455555544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.37  E-value=4.6e-07  Score=67.42  Aligned_cols=68  Identities=19%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             CcEEEEeccCcccCCC-------------ccCccHHHHHHHHHHCCCcEEEEeCCCCCh-HHHHHHHHh--------CCC
Q 033480           30 FKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKS--------LGF   87 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~-------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~~~~~~L~~--------~gi   87 (118)
                      .+.+++|+||++....             .++||+.++|+.|+++|++++|+||+++.. ..+...|+.        +|+
T Consensus       159 ~~~i~iD~dgtl~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~~  238 (301)
T 1ltq_A          159 PKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGV  238 (301)
T ss_dssp             CEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTCC
T ss_pred             cceEEEeCCCCcccccCCCchhhhhccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccCC
Confidence            3688899999975432             248999999999999999999999987432 223456777        898


Q ss_pred             CCcCCCceeehHH
Q 033480           88 DPSLFAGAITSGE  100 (118)
Q Consensus        88 ~~~~fd~iits~~  100 (118)
                        + |+.++++++
T Consensus       239 --~-~~~~~~~~~  248 (301)
T 1ltq_A          239 --P-LVMQCQREQ  248 (301)
T ss_dssp             --C-CSEEEECCT
T ss_pred             --C-chheeeccC
Confidence              3 688887543

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=98.36  E-value=4.8e-07  Score=65.95  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=37.9

Q ss_pred             cEEEEeccCcccCCCc--cCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           31 KAWLLDQFGVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~~--~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      |.++||+||||++...  +.+...++|++|+++|+.++++|+++
T Consensus         3 kli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~   46 (261)
T 2rbk_A            3 KALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRP   46 (261)
T ss_dssp             CEEEECSBTTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEeCCCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            8999999999998765  55889999999999999999999875

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=98.34  E-value=7.4e-07  Score=61.46  Aligned_cols=40  Identities=13%  Similarity=0.085  Sum_probs=33.5

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +.||+.++++.|+++|++++++||+++  ..+...++.+|+.
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~~~~~~~~  122 (219)
T 3kd3_A           83 LTDGIKELVQDLKNKGFEIWIFSGGLS--ESIQPFADYLNIP  122 (219)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHTCC
T ss_pred             CChhHHHHHHHHHHCCCeEEEEcCCcH--HHHHHHHHHcCCC
Confidence            578999999999999999999999743  3466778888885

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=98.32  E-value=1.3e-06  Score=61.70  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=38.9

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++|++.++|+.|+++ ++++++||+++  ..+...++.+|+.   |+.+++++.+
T Consensus       117 ~~~~~~~~l~~l~~~-~~~~i~t~~~~--~~~~~~l~~~~~~---f~~~~~~~~~  165 (254)
T 3umg_A          117 PWPDSVPGLTAIKAE-YIIGPLSNGNT--SLLLDMAKNAGIP---WDVIIGSDIN  165 (254)
T ss_dssp             BCTTHHHHHHHHHHH-SEEEECSSSCH--HHHHHHHHHHTCC---CSCCCCHHHH
T ss_pred             CCcCHHHHHHHHHhC-CeEEEEeCCCH--HHHHHHHHhCCCC---eeEEEEcCcC
Confidence            368999999999987 99999999754  3456778888885   5888887654

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=98.32  E-value=2.6e-06  Score=58.90  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=41.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++|++.++|+.|++.|++++++||+++  ..+...++.+|+..+ |+.++++.+
T Consensus        95 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~~~~~-~~~~~~~~~  145 (226)
T 1te2_A           95 LLPGVREAVALCKEQGLLVGLASASPL--HMLEKVLTMFDLRDS-FDALASAEK  145 (226)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEECTT
T ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCcH--HHHHHHHHhcCcHhh-CcEEEeccc
Confidence            467888899999999999999998753  345677888999887 688887643

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=98.29  E-value=1.3e-06  Score=62.02  Aligned_cols=48  Identities=13%  Similarity=0.303  Sum_probs=37.9

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      +|++.++|+.|++. ++++++||+++  ..+...++.+|+.   |+.+++++.+
T Consensus       122 ~~~~~~~l~~l~~~-~~~~i~s~~~~--~~~~~~l~~~g~~---f~~~~~~~~~  169 (254)
T 3umc_A          122 WPDTLAGMHALKAD-YWLAALSNGNT--ALMLDVARHAGLP---WDMLLCADLF  169 (254)
T ss_dssp             CTTHHHHHHHHTTT-SEEEECCSSCH--HHHHHHHHHHTCC---CSEECCHHHH
T ss_pred             CccHHHHHHHHHhc-CeEEEEeCCCH--HHHHHHHHHcCCC---cceEEeeccc
Confidence            58899999999875 99999999754  3456778888885   5888888654

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=98.25  E-value=3.8e-07  Score=66.42  Aligned_cols=54  Identities=7%  Similarity=-0.036  Sum_probs=42.2

Q ss_pred             EEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+++|+||||++....++...++|++++ +|++++++|++  +...+...++.+++.
T Consensus         5 li~~DlDGTLl~~~~~~~~~~~~l~~~~-~gi~v~iaTGR--~~~~~~~~~~~l~l~   58 (244)
T 1s2o_A            5 LLISDLDNTWVGDQQALEHLQEYLGDRR-GNFYLAYATGR--SYHSARELQKQVGLM   58 (244)
T ss_dssp             EEEECTBTTTBSCHHHHHHHHHHHHTTG-GGEEEEEECSS--CHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCCCcCCHHHHHHHHHHHHHhc-CCCEEEEEcCC--CHHHHHHHHHHcCCC
Confidence            8999999999987765677778887765 68999999975  445566777777764

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.24  E-value=1.6e-06  Score=67.73  Aligned_cols=44  Identities=30%  Similarity=0.222  Sum_probs=36.6

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA   93 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd   93 (118)
                      ++||+.++|+.|+++|++++|+||+.+  ..+...++.+|+..+ |+
T Consensus       257 ~~pg~~e~l~~Lk~~G~~~~ivS~~~~--~~~~~~~~~lgl~~~-~~  300 (415)
T 3p96_A          257 LMPGARTTLRTLRRLGYACGVVSGGFR--RIIEPLAEELMLDYV-AA  300 (415)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCSEE-EE
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcH--HHHHHHHHHcCccce-ee
Confidence            579999999999999999999999743  346678888999866 44

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=98.19  E-value=1.2e-06  Score=64.26  Aligned_cols=51  Identities=20%  Similarity=0.240  Sum_probs=40.6

Q ss_pred             CCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL   82 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L   82 (118)
                      +++.+++|+||||++... +-|.+.++|++|+++ +.++++|+++  ...+.+.+
T Consensus        12 ~~kli~~DlDGTLl~~~~~is~~~~~al~~l~~~-i~v~iaTGR~--~~~~~~~l   63 (262)
T 2fue_A           12 ERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSR-VQIGVVGGSD--YCKIAEQL   63 (262)
T ss_dssp             -CEEEEEESBTTTBSTTSCCCHHHHHHHHHHTTT-SEEEEECSSC--HHHHHHHH
T ss_pred             CeEEEEEeCccCCCCCCCcCCHHHHHHHHHHHhC-CEEEEEcCCC--HHHHHHHH
Confidence            689999999999998765 558899999999988 9999999754  33344444

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=98.17  E-value=1.7e-06  Score=62.96  Aligned_cols=41  Identities=24%  Similarity=0.254  Sum_probs=36.8

Q ss_pred             EEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      .++||+||||++...+.+.+.++|++|+++|++++++|+++
T Consensus         2 li~~DlDGTLl~~~~i~~~~~~al~~l~~~Gi~v~iaTGR~   42 (259)
T 3zx4_A            2 IVFTDLDGTLLDERGELGPAREALERLRALGVPVVPVTAKT   42 (259)
T ss_dssp             EEEECCCCCCSCSSSSCSTTHHHHHHHHHTTCCEEEBCSSC
T ss_pred             EEEEeCCCCCcCCCcCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999877667999999999999999999999764

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=98.16  E-value=3.3e-06  Score=60.70  Aligned_cols=52  Identities=15%  Similarity=0.098  Sum_probs=37.9

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++++.|+++|++++++||+++  ..+...++.+|+..++|+.+++++.
T Consensus       104 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~  155 (267)
T 1swv_A          104 PINGVKEVIASLRERGIKIGSTTGYTR--EMMDIVAKEAALQGYKPDFLVTPDD  155 (267)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEBCSSCH--HHHHHHHHHHHHTTCCCSCCBCGGG
T ss_pred             cCccHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHcCCcccChHheecCCc
Confidence            467888899999999999999998753  3345666777766652377777654

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=98.15  E-value=2.4e-06  Score=62.57  Aligned_cols=50  Identities=20%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             cCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           47 PYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ++||+.++|+.|+++ |++++++||+++  ..+...++.+|+. + |+.++++++
T Consensus       115 ~~~g~~~~L~~l~~~~g~~l~i~T~~~~--~~~~~~l~~~~l~-~-f~~i~~~~~  165 (275)
T 2qlt_A          115 EVPGAVKLCNALNALPKEKWAVATSGTR--DMAKKWFDILKIK-R-PEYFITAND  165 (275)
T ss_dssp             ECTTHHHHHHHHHTSCGGGEEEECSSCH--HHHHHHHHHHTCC-C-CSSEECGGG
T ss_pred             cCcCHHHHHHHHHhccCCeEEEEeCCCH--HHHHHHHHHcCCC-c-cCEEEEccc
Confidence            468889999999999 999999999754  3456778888886 3 588888765

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=98.15  E-value=6.5e-06  Score=60.61  Aligned_cols=59  Identities=8%  Similarity=-0.112  Sum_probs=46.2

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHH--------HHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLE--------MLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~--------~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .++.++||+||||++.. +.|...+.+.        .+++.|+.++++|+.  +...+...++.+|++..
T Consensus        21 ~~kliifDlDGTLlds~-i~~~~~~~l~~~~~~l~~~~~~~g~~~~~~tGr--~~~~~~~~~~~~g~~~~   87 (289)
T 3gyg_A           21 PQYIVFCDFDETYFPHT-IDEQKQQDIYELEDYLEQKSKDGELIIGWVTGS--SIESILDKMGRGKFRYF   87 (289)
T ss_dssp             CSEEEEEETBTTTBCSS-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEECSS--CHHHHHHHHHHTTCCBC
T ss_pred             CCeEEEEECCCCCcCCC-CCcchHHHHHHHHHHHHHHHhcCCcEEEEEcCC--CHHHHHHHHHhhccCCC
Confidence            57899999999999976 6677777777        456789999999865  44556778888888543

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=98.08  E-value=4.6e-06  Score=57.32  Aligned_cols=47  Identities=28%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCc
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG   94 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~   94 (118)
                      ..+.|++.++|+.|+++|++++++||++.  ..+...++.+++..+ |+.
T Consensus        75 ~~l~~~~~~~l~~l~~~g~~~~i~T~~~~--~~~~~~~~~~~~~~~-~~~  121 (211)
T 1l7m_A           75 ITPTEGAEETIKELKNRGYVVAVVSGGFD--IAVNKIKEKLGLDYA-FAN  121 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEEEEH--HHHHHHHHHHTCSEE-EEE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEcCCcH--HHHHHHHHHcCCCeE-EEe
Confidence            34578999999999999999999998643  234456777887655 443

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=98.08  E-value=5e-06  Score=61.70  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=56.1

Q ss_pred             cCCcEEEEeccCcccC----CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480           28 RRFKAWLLDQFGVLHD----GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~----~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits   98 (118)
                      ...+.+++|+|+++..    ...++||+.++|+.|+++|++++|+||+++  ..+...++.+|+..+ |+.++..
T Consensus       141 ~g~~~i~~~~d~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~-f~~i~~~  212 (287)
T 3a1c_A          141 EAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNW--RSAEAISRELNLDLV-IAEVLPH  212 (287)
T ss_dssp             TTCEEEEEEETTEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHTCSEE-ECSCCTT
T ss_pred             CCCeEEEEEECCEEEEEEEeccccchhHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHhCCcee-eeecChH
Confidence            3578899999997643    457899999999999999999999999754  346678889999988 6887743

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=97.99  E-value=4.4e-06  Score=65.65  Aligned_cols=55  Identities=18%  Similarity=0.263  Sum_probs=47.3

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC--ceeehHHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA--GAITSGELT  102 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd--~iits~~v~  102 (118)
                      ..++||+.++|+.|+++|++++|+||+++  ..+...|+.+|+..+ |+  .+++++++.
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~--~~~~~~L~~lgL~~~-Fd~~~Ivs~ddv~  270 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPY--TETVVPFENLGLLPY-FEADFIATASDVL  270 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHTCGGG-SCGGGEECHHHHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcH--HHHHHHHHHcCChHh-cCCCEEEeccccc
Confidence            36789999999999999999999999864  346678899999988 79  899988764

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=97.97  E-value=1.2e-05  Score=59.29  Aligned_cols=22  Identities=9%  Similarity=0.076  Sum_probs=16.4

Q ss_pred             CCcEEEEeCCCCChHHHHHHHHhC
Q 033480           62 GAKMVVISNSSRRASTTIDKLKSL   85 (118)
Q Consensus        62 Gi~v~I~TN~~r~~~~~~~~L~~~   85 (118)
                      |++++|+||+++.  .+...++.+
T Consensus       137 g~~l~i~Tn~~~~--~~~~~l~~~  158 (253)
T 2g80_A          137 KKRVFIYSSGSVK--AQKLLFGYV  158 (253)
T ss_dssp             CSCEEEECSSCHH--HHHHHHHSB
T ss_pred             CCEEEEEeCCCHH--HHHHHHHhh
Confidence            8999999998653  345666765

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=97.93  E-value=2.6e-06  Score=58.19  Aligned_cols=48  Identities=31%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits   98 (118)
                      +.||+.++|+.|+++|++++++||+++..  +... +.+|+..+ |+.+.+.
T Consensus        80 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~--~~~~-~~~~~~~~-~~~~~~~  127 (201)
T 4ap9_A           80 VSPEARELVETLREKGFKVVLISGSFEEV--LEPF-KELGDEFM-ANRAIFE  127 (201)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEEEEETTT--SGGG-TTTSSEEE-EEEEEEE
T ss_pred             CChhHHHHHHHHHHCCCeEEEEeCCcHHH--HHHH-HHcCchhh-eeeEEee
Confidence            46889999999999999999999986543  2344 77888766 4555443

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=97.87  E-value=3.9e-05  Score=53.31  Aligned_cols=49  Identities=24%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCC-CceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF-AGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~f-d~iits~~v  101 (118)
                      ++|++.++++.|+   .+++++||+++  ..+...++.+|+..+ | +.+++++.+
T Consensus        88 ~~~~~~~~l~~l~---~~~~i~s~~~~--~~~~~~l~~~~l~~~-~~~~~~~~~~~  137 (229)
T 2fdr_A           88 IIDGVKFALSRLT---TPRCICSNSSS--HRLDMMLTKVGLKPY-FAPHIYSAKDL  137 (229)
T ss_dssp             BCTTHHHHHHHCC---SCEEEEESSCH--HHHHHHHHHTTCGGG-TTTCEEEHHHH
T ss_pred             cCcCHHHHHHHhC---CCEEEEECCCh--hHHHHHHHhCChHHh-ccceEEecccc
Confidence            4566666666554   38999999754  345677888999887 8 888887663

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=97.84  E-value=1.3e-05  Score=56.43  Aligned_cols=53  Identities=25%  Similarity=0.304  Sum_probs=41.5

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~  102 (118)
                      .++||+.++|++|+++|++++++||+++   .+...++.+|+..+ ||.+++++++.
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~Tn~~~---~~~~~l~~~gl~~~-f~~~~~~~~~~  147 (220)
T 2zg6_A           95 FLYDDTLEFLEGLKSNGYKLALVSNASP---RVKTLLEKFDLKKY-FDALALSYEIK  147 (220)
T ss_dssp             EECTTHHHHHHHHHTTTCEEEECCSCHH---HHHHHHHHHTCGGG-CSEEC------
T ss_pred             eECcCHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHhcCcHhH-eeEEEeccccC
Confidence            5789999999999999999999999743   35678899999988 79999988753

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=97.76  E-value=4e-05  Score=54.33  Aligned_cols=54  Identities=24%  Similarity=0.287  Sum_probs=45.5

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++||+.++|+.|+++|++++++||+++  ..+...++.+|+..+ |+.+++++++
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~~  146 (241)
T 2hoq_A           93 LREVPGARKVLIRLKELGYELGIITDGNP--VKQWEKILRLELDDF-FEHVIISDFE  146 (241)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEECSCH--HHHHHHHHHTTCGGG-CSEEEEGGGG
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEECCCc--hhHHHHHHHcCcHhh-ccEEEEeCCC
Confidence            45789999999999999999999999754  345678899999988 7999988753

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=97.75  E-value=3.2e-05  Score=56.69  Aligned_cols=52  Identities=10%  Similarity=0.086  Sum_probs=42.1

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh---CCCCCcCCCceeeh
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS---LGFDPSLFAGAITS   98 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~---~gi~~~~fd~iits   98 (118)
                      ...++||+.++|+.|+++|++++|+||+++.  .....|+.   .|+..+ ||.++++
T Consensus       128 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~--~~~~~l~~~~~~~l~~~-fd~i~~~  182 (261)
T 1yns_A          128 KAEFFADVVPAVRKWREAGMKVYIYSSGSVE--AQKLLFGHSTEGDILEL-VDGHFDT  182 (261)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHTBTTBCCGGG-CSEEECG
T ss_pred             ccccCcCHHHHHHHHHhCCCeEEEEeCCCHH--HHHHHHHhhcccChHhh-ccEEEec
Confidence            3468999999999999999999999998643  34456664   569888 7999887

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=97.73  E-value=2.4e-05  Score=55.79  Aligned_cols=53  Identities=25%  Similarity=0.358  Sum_probs=44.6

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ...++||+.++|+.|+++|++++|+||+++  ..+...++.+|+. + |+.++++++
T Consensus       108 ~~~~~~g~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~-~-f~~~~~~~~  160 (240)
T 2hi0_A          108 KTGPFPGILDLMKNLRQKGVKLAVVSNKPN--EAVQVLVEELFPG-S-FDFALGEKS  160 (240)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHSTT-T-CSEEEEECT
T ss_pred             cCCcCCCHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHHcCCc-c-eeEEEecCC
Confidence            446789999999999999999999999754  3466788889988 7 799998865

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=97.71  E-value=1.3e-05  Score=61.63  Aligned_cols=48  Identities=15%  Similarity=0.115  Sum_probs=34.8

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh----CCCCCcCCCceeehH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS----LGFDPSLFAGAITSG   99 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~----~gi~~~~fd~iits~   99 (118)
                      ++|++.++++.|+++|+.++|+|.+++  ..+....+.    +||+  . ++|+++.
T Consensus       144 ~~~~~~~l~~~l~~~G~~v~ivSas~~--~~v~~~a~~~~~~ygIp--~-e~ViG~~  195 (327)
T 4as2_A          144 VFSGQRELYNKLMENGIEVYVISAAHE--ELVRMVAADPRYGYNAK--P-ENVIGVT  195 (327)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHTCGGGSCCCC--G-GGEEEEC
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCcH--HHHHHHHhhcccccCCC--H-HHeEeee
Confidence            467899999999999999999998753  223333343    5665  3 6788863

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=97.70  E-value=3e-05  Score=56.54  Aligned_cols=54  Identities=17%  Similarity=0.266  Sum_probs=44.9

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ...++||+.++|+.|++ +++++|+||+++  ..+...++.+|+..+ ||.+++++++
T Consensus       119 ~~~~~~g~~~~L~~L~~-~~~l~i~Tn~~~--~~~~~~l~~~gl~~~-f~~i~~~~~~  172 (260)
T 2gfh_A          119 HMILADDVKAMLTELRK-EVRLLLLTNGDR--QTQREKIEACACQSY-FDAIVIGGEQ  172 (260)
T ss_dssp             TCCCCHHHHHHHHHHHT-TSEEEEEECSCH--HHHHHHHHHHTCGGG-CSEEEEGGGS
T ss_pred             cCCCCcCHHHHHHHHHc-CCcEEEEECcCh--HHHHHHHHhcCHHhh-hheEEecCCC
Confidence            34678999999999987 599999999854  345678899999998 7999988764

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=97.60  E-value=7.5e-05  Score=51.23  Aligned_cols=57  Identities=9%  Similarity=0.031  Sum_probs=40.0

Q ss_pred             cCCCccCccHHHHHHHHHHCCCcEEEEeCCCC---ChHHHHHHHHh-CCCCCcCCCceeehHH
Q 033480           42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSR---RASTTIDKLKS-LGFDPSLFAGAITSGE  100 (118)
Q Consensus        42 ~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r---~~~~~~~~L~~-~gi~~~~fd~iits~~  100 (118)
                      .....++||+.++|+.|+++ ++++|+||+++   ........|.. ++...+ |+.++++++
T Consensus        65 ~~~~~~~pg~~e~L~~L~~~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~-~~~i~~~~~  125 (180)
T 3bwv_A           65 FRNLDVMPHAQEVVKQLNEH-YDIYIATAAMDVPTSFHDKYEWLLEYFPFLDP-QHFVFCGRK  125 (180)
T ss_dssp             GGSCCBCTTHHHHHHHHTTT-SEEEEEECC--CCSHHHHHHHHHHHHCTTSCG-GGEEECSCG
T ss_pred             hccCCCCcCHHHHHHHHHhc-CCEEEEeCCCCcchHHHHHHHHHHHHcCCCCc-ccEEEeCCc
Confidence            34567899999999999885 99999999832   12233445655 676665 567777665

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=97.55  E-value=7e-05  Score=58.70  Aligned_cols=74  Identities=9%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             HHHHhhcCCcEEEEeccCcccCCC-----------------------------------------ccCccHHHHHHHHHH
Q 033480           22 RHIAETRRFKAWLLDQFGVLHDGK-----------------------------------------KPYPGAISTLEMLAT   60 (118)
Q Consensus        22 ~~~~~~~~~~~~~~D~DGtL~~~~-----------------------------------------~~~pga~e~L~~Lk~   60 (118)
                      ..++. .+.+.++||+||||.+..                                         ..-||+.+||+.+. 
T Consensus        11 ~rl~~-~~k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~-   88 (372)
T 3ef0_A           11 KRLRQ-EKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-   88 (372)
T ss_dssp             HHHHH-HTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHH-
T ss_pred             HHHHh-CCCCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHh-
Confidence            44444 689999999999998751                                         01499999999998 


Q ss_pred             CCCcEEEEeCCCCChHHHHHHHHhCCCCC-cCCC-ceeehHH
Q 033480           61 TGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFA-GAITSGE  100 (118)
Q Consensus        61 ~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~-~~fd-~iits~~  100 (118)
                      +++.++|.|++++..  +...++.++... + |+ .+++.++
T Consensus        89 ~~yeivI~Tas~~~y--A~~vl~~LDp~~~~-f~~ri~sr~~  127 (372)
T 3ef0_A           89 ELYELHIYTMGTKAY--AKEVAKIIDPTGKL-FQDRVLSRDD  127 (372)
T ss_dssp             TTEEEEEECSSCHHH--HHHHHHHHCTTSCS-SSSCEECTTT
T ss_pred             cCcEEEEEeCCcHHH--HHHHHHHhccCCce-eeeEEEEecC
Confidence            779999999986543  446777777766 4 56 5665443

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=97.53  E-value=0.00026  Score=49.03  Aligned_cols=55  Identities=22%  Similarity=0.210  Sum_probs=45.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++|++.++|+.|+++|++++++||+. .....+...++.+|+..+ |+.+++++++
T Consensus        99 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~~~-f~~~~~~~~~  154 (235)
T 2om6_A           99 LVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEF-IDKTFFADEV  154 (235)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGGG-CSEEEEHHHH
T ss_pred             CcCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcHHH-hhhheecccc
Confidence            468999999999999999999999976 113445678889999988 7999988764

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=97.52  E-value=6.1e-05  Score=53.41  Aligned_cols=49  Identities=24%  Similarity=0.427  Sum_probs=41.0

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      ..++||+.++|+.|+++| +++|+||+++..  +...|+.+|+..+ |+.++.
T Consensus        95 ~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~--~~~~l~~~gl~~~-f~~~~~  143 (231)
T 2p11_A           95 SRVYPGALNALRHLGARG-PTVILSDGDVVF--QPRKIARSGLWDE-VEGRVL  143 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTS-CEEEEEECCSSH--HHHHHHHTTHHHH-TTTCEE
T ss_pred             CCcCccHHHHHHHHHhCC-CEEEEeCCCHHH--HHHHHHHcCcHHh-cCeeEE
Confidence            357899999999999999 999999987643  5688899999887 687654

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=97.50  E-value=7.2e-05  Score=54.15  Aligned_cols=67  Identities=15%  Similarity=0.013  Sum_probs=51.5

Q ss_pred             CCcEEEEeccCcccCCC---------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC-cCCCceeeh
Q 033480           29 RFKAWLLDQFGVLHDGK---------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITS   98 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~---------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~-~~fd~iits   98 (118)
                      +...+++|+|+||.+..         ..-||+.+||+.+. +++.++|.|++.+.  -+...++.++... + |+..+..
T Consensus        33 ~~~tLVLDLDeTLvh~~~~~~~~~~v~~RPgl~eFL~~l~-~~yeivI~Tas~~~--ya~~vl~~LDp~~~~-f~~rl~R  108 (204)
T 3qle_A           33 RPLTLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLS-QYYEIVLFSSNYMM--YSDKIAEKLDPIHAF-VSYNLFK  108 (204)
T ss_dssp             CSEEEEEECBTTTEEEEEETTTEEEEEECTTHHHHHHHHT-TTEEEEEECSSCHH--HHHHHHHHTSTTCSS-EEEEECG
T ss_pred             CCeEEEEeccccEEeeeccccCceeEEeCCCHHHHHHHHH-hCCEEEEEcCCcHH--HHHHHHHHhCCCCCe-EEEEEEe
Confidence            67899999999998742         23699999999997 77999999987653  3557778888763 4 5655544


Q ss_pred             H
Q 033480           99 G   99 (118)
Q Consensus        99 ~   99 (118)
                      +
T Consensus       109 ~  109 (204)
T 3qle_A          109 E  109 (204)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=96.55  E-value=2e-05  Score=58.01  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             CcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        39 GtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      |.+.....++||+.++|++|+++|++++++||.++.  .+...++.+|+..+ |+.++
T Consensus       129 ~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~--~~~~~~~~~gl~~~-f~~~~  183 (263)
T 2yj3_A          129 ASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKED--KVKELSKELNIQEY-YSNLS  183 (263)
Confidence            344455678999999999999999999999998653  35678889999888 67776

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=97.35  E-value=0.00027  Score=49.09  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             CccCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           45 KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ..++||+.++|+.|+++ |++++|+||+++  ..+...++.+|+..+ |+.++++.+
T Consensus        92 ~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  145 (234)
T 2hcf_A           92 ITLLEGVRELLDALSSRSDVLLGLLTGNFE--ASGRHKLKLPGIDHY-FPFGAFADD  145 (234)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCH--HHHHHHHHTTTCSTT-CSCEECTTT
T ss_pred             CCcCCCHHHHHHHHHhCCCceEEEEcCCcH--HHHHHHHHHCCchhh-cCcceecCC
Confidence            35789999999999999 999999999754  345678899999988 687665543

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=97.31  E-value=4.4e-05  Score=53.33  Aligned_cols=45  Identities=11%  Similarity=0.230  Sum_probs=34.3

Q ss_pred             CCCccCccHHHHHHHHHHC-CCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           43 DGKKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~-Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      ....++||+.++|+.|+++ |++++|+||+++..  ....++.+|+..
T Consensus        72 ~~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~--~~~~l~~~~l~~  117 (197)
T 1q92_A           72 FELEPLPGAVEAVKEMASLQNTDVFICTSPIKMF--KYCPYEKYAWVE  117 (197)
T ss_dssp             TTCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCC--SSHHHHHHHHHH
T ss_pred             hcCCcCcCHHHHHHHHHhcCCCeEEEEeCCccch--HHHHHHHhchHH
Confidence            3557899999999999999 99999999987543  224455555544

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=97.14  E-value=0.00042  Score=46.71  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=43.5

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ....+.|++.++|+.|+++|++++++||+.+.  ... .++.+++..+ |+.++++.+
T Consensus        82 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~--~~~-~~~~~~~~~~-f~~~~~~~~  135 (207)
T 2go7_A           82 AQVVLMPGAREVLAWADESGIQQFIYTHKGNN--AFT-ILKDLGVESY-FTEILTSQS  135 (207)
T ss_dssp             GGCEECTTHHHHHHHHHHTTCEEEEECSSCTH--HHH-HHHHHTCGGG-EEEEECGGG
T ss_pred             ccceeCcCHHHHHHHHHHCCCeEEEEeCCchH--HHH-HHHHcCchhh-eeeEEecCc
Confidence            44567899999999999999999999997643  345 7788898887 688887754

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=97.01  E-value=0.00095  Score=47.34  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=43.4

Q ss_pred             CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        43 ~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      ....++||+.++|+.|+ +|++++++||+++  ..+...++.+|+..+ |+.++++.
T Consensus       109 ~~~~~~~~~~~~l~~l~-~~~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~i~~~~  161 (251)
T 2pke_A          109 HPVEVIAGVREAVAAIA-ADYAVVLITKGDL--FHQEQKIEQSGLSDL-FPRIEVVS  161 (251)
T ss_dssp             CCCCBCTTHHHHHHHHH-TTSEEEEEEESCH--HHHHHHHHHHSGGGT-CCCEEEES
T ss_pred             ccCCcCccHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHHHHcCcHHh-CceeeeeC
Confidence            34567899999999999 9999999999754  345678888999888 79888754

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=97.00  E-value=0.00066  Score=46.59  Aligned_cols=51  Identities=22%  Similarity=0.312  Sum_probs=42.2

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      ..++|++.++++.|+++|++++++||+ .   .....++.+|+..+ |+.++++++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~-~---~~~~~l~~~~l~~~-f~~~~~~~~  140 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS-K---NGPFLLERMNLTGY-FDAIADPAE  140 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC-T---THHHHHHHTTCGGG-CSEECCTTT
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc-H---HHHHHHHHcChHHH-cceEecccc
Confidence            357899999999999999999999997 2   24567788999888 788888754

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=96.97  E-value=0.00071  Score=48.09  Aligned_cols=49  Identities=14%  Similarity=0.033  Sum_probs=37.1

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .++||+.++|+.|+++|++++|+||+++  ..+...++  |+..  |+.++++..
T Consensus        77 ~~~pg~~~~l~~L~~~g~~~~ivS~~~~--~~~~~~l~--~l~~--~~~v~~~~~  125 (236)
T 2fea_A           77 KIREGFREFVAFINEHEIPFYVISGGMD--FFVYPLLE--GIVE--KDRIYCNHA  125 (236)
T ss_dssp             CBCTTHHHHHHHHHHHTCCEEEEEEEEH--HHHHHHHT--TTSC--GGGEEEEEE
T ss_pred             CCCccHHHHHHHHHhCCCeEEEEeCCcH--HHHHHHHh--cCCC--CCeEEeeee
Confidence            4589999999999999999999999754  33445566  7644  367777654

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=96.88  E-value=0.00027  Score=50.24  Aligned_cols=38  Identities=8%  Similarity=-0.111  Sum_probs=30.0

Q ss_pred             cCCcEEEEeccCcccCCCcc-CccHHHHHHHHHHCCCcE
Q 033480           28 RRFKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKM   65 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~-~pga~e~L~~Lk~~Gi~v   65 (118)
                      |.++.++||+||||++.... .+...++++.+++.|++.
T Consensus        11 M~~k~iifDlDGTL~d~~~~~~~~~~~~~~~l~~~g~~~   49 (251)
T 2pke_A           11 QAIQLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLG   49 (251)
T ss_dssp             CSCCEEEECCBTTTBCCHHHHHHHHHHHHHHHTTTCCC-
T ss_pred             CceeEEEEeCCCCCccCcHhHHHHHHHHHHHHHHhCCch
Confidence            35799999999999987664 455677888888889876

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=96.83  E-value=0.00012  Score=55.24  Aligned_cols=39  Identities=13%  Similarity=-0.062  Sum_probs=32.1

Q ss_pred             cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCC
Q 033480           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS   71 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~   71 (118)
                      +.++.++||+||||++....     ++|.+++..|+.++++|+.
T Consensus        19 ~~~kli~fDlDGTLld~~~~-----~~l~~~~~~g~~~~~~tGR   57 (332)
T 1y8a_A           19 FQGHMFFTDWEGPWILTDFA-----LELCMAVFNNARFFSNLSE   57 (332)
T ss_dssp             -CCCEEEECSBTTTBCCCHH-----HHHHHHHHCCHHHHHHHHH
T ss_pred             CCceEEEEECcCCCcCccHH-----HHHHHHHHCCCEEEEEcCC
Confidence            36899999999999987653     7788888888888888864

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=96.79  E-value=0.0011  Score=45.88  Aligned_cols=59  Identities=15%  Similarity=0.064  Sum_probs=33.4

Q ss_pred             cCCcEEEEeccCcccCCCccC-ccHHHHHHHHHHCCCcE--EEEeCCCCChHH-HHHHHHhCCCC
Q 033480           28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKM--VVISNSSRRAST-TIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~-pga~e~L~~Lk~~Gi~v--~I~TN~~r~~~~-~~~~L~~~gi~   88 (118)
                      |.++.++||+||||++....+ +...++++++  .|.+.  .+....++.... +...++.+|+.
T Consensus         2 M~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   64 (234)
T 2hcf_A            2 MSRTLVLFDIDGTLLKVESMNRRVLADALIEV--YGTEGSTGSHDFSGKMDGAIIYEVLSNVGLE   64 (234)
T ss_dssp             -CCEEEEECCBTTTEEECTHHHHHHHHHHHHH--HSCCCCC---CCTTCCHHHHHHHHHHTTTCC
T ss_pred             CcceEEEEcCCCCcccCccchHHHHHHHHHHH--hCCCCccchhhhcCCChHHHHHHHHHHcCCC
Confidence            568999999999999876643 3444455542  23332  122222344333 45666777764

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=96.64  E-value=0.0051  Score=45.50  Aligned_cols=42  Identities=12%  Similarity=0.115  Sum_probs=34.0

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      ++-||+.++++.|+++|++++++|+.-  ...+...++.+|+..
T Consensus       141 ~l~~g~~e~i~~l~~~gi~v~ivSgg~--~~~i~~i~~~~g~~~  182 (297)
T 4fe3_A          141 MLKEGYENFFGKLQQHGIPVFIFSAGI--GDVLEEVIRQAGVYH  182 (297)
T ss_dssp             CBCBTHHHHHHHHHHTTCCEEEEEEEE--HHHHHHHHHHTTCCC
T ss_pred             CCCCcHHHHHHHHHHcCCeEEEEeCCc--HHHHHHHHHHcCCCc
Confidence            356999999999999999999999753  345667778888864

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=96.31  E-value=0.0044  Score=47.53  Aligned_cols=58  Identities=24%  Similarity=0.160  Sum_probs=44.9

Q ss_pred             CCcEEEEeccCcccCCCc--------cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKK--------PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~--------~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +.+.+++|+||||.+...        .=||+.+||+++. +.+.++|.|++.+..  +...++.++...
T Consensus       139 ~k~tLVLDLDeTLvh~~~~~~~~~~~~RP~l~eFL~~l~-~~yeivIfTas~~~y--a~~vld~Ld~~~  204 (320)
T 3shq_A          139 GKKLLVLDIDYTLFDHRSPAETGTELMRPYLHEFLTSAY-EDYDIVIWSATSMRW--IEEKMRLLGVAS  204 (320)
T ss_dssp             TCEEEEECCBTTTBCSSSCCSSHHHHBCTTHHHHHHHHH-HHEEEEEECSSCHHH--HHHHHHHTTCTT
T ss_pred             CCcEEEEeccccEEcccccCCCcceEeCCCHHHHHHHHH-hCCEEEEEcCCcHHH--HHHHHHHhCCCC
Confidence            468999999999987642        2499999999998 459999999876543  456677776543

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=96.19  E-value=0.0062  Score=45.70  Aligned_cols=47  Identities=15%  Similarity=0.043  Sum_probs=37.8

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCc
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG   94 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~   94 (118)
                      ..++||+.++++.|+++|++++++||+.+  ..+...++.+|+..+ |+.
T Consensus       177 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~--~~~~~~~~~lgl~~~-~~~  223 (335)
T 3n28_A          177 LPLMPELPELVATLHAFGWKVAIASGGFT--YFSDYLKEQLSLDYA-QSN  223 (335)
T ss_dssp             CCCCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHTCSEE-EEE
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEeCCcH--HHHHHHHHHcCCCeE-Eee
Confidence            35789999999999999999999999743  345577788998765 454

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=95.81  E-value=0.002  Score=43.22  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=20.2

Q ss_pred             cCCcEEEEeccCcccCCCccC-ccHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEML   58 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~-pga~e~L~~L   58 (118)
                      |.++.++||+||||++....+ +...++++++
T Consensus         2 M~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~   33 (207)
T 2go7_A            2 MQKTAFIWDLDGTLLDSYEAILSGIEETFAQF   33 (207)
T ss_dssp             --CCEEEECTBTTTEECHHHHHHHHHHHHHHH
T ss_pred             CcccEEEEeCCCcccccHHHHHHHHHHHHHHc
Confidence            568999999999999876533 3344444443

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=95.34  E-value=0.0076  Score=41.97  Aligned_cols=20  Identities=30%  Similarity=0.167  Sum_probs=16.7

Q ss_pred             cCCcEEEEeccCcccCCCcc
Q 033480           28 RRFKAWLLDQFGVLHDGKKP   47 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~   47 (118)
                      |++++++||+||||++....
T Consensus         1 M~~k~viFDlDGTL~d~~~~   20 (220)
T 2zg6_A            1 MKYKAVLVDFGNTLVGFKPV   20 (220)
T ss_dssp             CCCCEEEECSBTTTEEEEET
T ss_pred             CCceEEEEcCCCceeccccc
Confidence            56899999999999976543

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=95.27  E-value=0.0053  Score=44.69  Aligned_cols=31  Identities=16%  Similarity=0.088  Sum_probs=24.0

Q ss_pred             cCCcEEEEeccCcccCC----CccCccHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDG----KKPYPGAISTLEML   58 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~----~~~~pga~e~L~~L   58 (118)
                      |.+++++||+||||+..    ...+|.+.+.+..+
T Consensus         8 m~ikaviFDlDGTL~ds~~~~~~~~~~a~~~~~~~   42 (261)
T 1yns_A            8 AEVTVILLDIEGTTTPIAFVKDILFPYIEENVKEY   42 (261)
T ss_dssp             TTCCEEEECCBTTTBCHHHHHHTHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCccchhhHhhcchHHHHHHHHHH
Confidence            36899999999999984    34567777777654

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=95.22  E-value=0.015  Score=45.33  Aligned_cols=44  Identities=11%  Similarity=0.052  Sum_probs=34.5

Q ss_pred             cCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCC
Q 033480           42 HDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF   87 (118)
Q Consensus        42 ~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi   87 (118)
                      .++.+++||+.|+++.|+++|++++|+|++.+  ..+....+.+|+
T Consensus       217 ~~gir~~p~~~eLi~~L~~~G~~v~IVSgg~~--~~v~~ia~~lg~  260 (385)
T 4gxt_A          217 FVGIRTLDEMVDLYRSLEENGIDCYIVSASFI--DIVRAFATDTNN  260 (385)
T ss_dssp             EECCEECHHHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHCTTS
T ss_pred             ccCceeCHHHHHHHHHHHHCCCeEEEEcCCcH--HHHHHHHHHhCc
Confidence            34567899999999999999999999998744  335555566654

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=94.96  E-value=0.0072  Score=42.64  Aligned_cols=20  Identities=25%  Similarity=0.371  Sum_probs=16.9

Q ss_pred             cCCcEEEEeccCcccCCCcc
Q 033480           28 RRFKAWLLDQFGVLHDGKKP   47 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~   47 (118)
                      |.+++++||+||||++....
T Consensus         2 M~~k~viFDlDGTL~ds~~~   21 (240)
T 2hi0_A            2 MKYKAAIFDMDGTILDTSAD   21 (240)
T ss_dssp             CSCSEEEECSBTTTEECHHH
T ss_pred             CcccEEEEecCCCCccCHHH
Confidence            56899999999999987543

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=94.95  E-value=0.0072  Score=42.43  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=24.4

Q ss_pred             CcEEEEeccCcccCCCccC-ccHHHHHHHHHHCCC
Q 033480           30 FKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGA   63 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~-pga~e~L~~Lk~~Gi   63 (118)
                      ++.++||+||||++....+ +...++++++...|+
T Consensus         2 ~k~iiFDlDGTL~d~~~~~~~~~~~~~~~~~~~~~   36 (241)
T 2hoq_A            2 VKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGL   36 (241)
T ss_dssp             CCEEEECSBTTTBCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccEEEEcCCCCCCCChhhHHHHHHHHHHHHHHccc
Confidence            6899999999999876543 345566666655543

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=94.84  E-value=0.0065  Score=41.78  Aligned_cols=28  Identities=14%  Similarity=0.011  Sum_probs=19.4

Q ss_pred             CcEEEEeccCcccCCCccC-ccHHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGKKPY-PGAISTLEM   57 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~-pga~e~L~~   57 (118)
                      ++.++||+||||++....+ +...+++++
T Consensus         4 ~k~i~fDlDGTL~d~~~~~~~~~~~~~~~   32 (235)
T 2om6_A            4 VKLVTFDVWNTLLDLNIMLDEFSHQLAKI   32 (235)
T ss_dssp             CCEEEECCBTTTBCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCCcchhHHHHHHHHHHH
Confidence            7999999999999865433 333444443

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=94.61  E-value=0.0057  Score=41.76  Aligned_cols=28  Identities=32%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             CcEEEEeccCcccCCCccC-ccHHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGKKPY-PGAISTLEM   57 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~-pga~e~L~~   57 (118)
                      ++.++||+||||++....+ +...+++++
T Consensus         2 ~k~i~fDlDGTL~d~~~~~~~~~~~~~~~   30 (221)
T 2wf7_A            2 FKAVLFDLDGVITDTAEYHFRAWKALAEE   30 (221)
T ss_dssp             CCEEEECCBTTTBTHHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCcccCChHHHHHHHHHHHHH
Confidence            6899999999999876543 333444443

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}

Probab=94.45  E-value=0.2  Score=32.46  Aligned_cols=77  Identities=8%  Similarity=-0.016  Sum_probs=58.0

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCC--CceeehHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLF--AGAITSGELTHQYL  106 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~f--d~iits~~v~~~~l  106 (118)
                      +.+.+++|+-++-.-+..-+.-..++.++++++|..++++.-+    ..+.+.|+..|+... |  +.++.+-+.+.+++
T Consensus        47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~~~~~i~~t~~~Al~~~  121 (130)
T 2kln_A           47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVK----QDLRESLRAASLLDK-IGEDHIFMTLPTAVQAF  121 (130)
T ss_dssp             CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCS----SHHHHHHHHCTTHHH-HCTTEEESCHHHHHHHH
T ss_pred             CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHcCChhh-cCcceeECCHHHHHHHH
Confidence            3678999999988888888888899999999999998887532    247788999998643 2  35666666666666


Q ss_pred             Hhcc
Q 033480          107 LRLI  110 (118)
Q Consensus       107 ~~~~  110 (118)
                      .+.+
T Consensus       122 ~~~~  125 (130)
T 2kln_A          122 RRRH  125 (130)
T ss_dssp             TTC-
T ss_pred             Hhhc
Confidence            6543

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=94.29  E-value=0.17  Score=42.74  Aligned_cols=65  Identities=15%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             cCCcEEEEeccCccc----CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCce
Q 033480           28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGA   95 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~i   95 (118)
                      ...+.+++..||++.    -.+++-|++.++|++|+++|++++++|+.+  ...+....+.+|++.. |..+
T Consensus       532 ~G~~vl~va~d~~~~G~i~i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~--~~~a~~ia~~lgi~~v-~a~~  600 (736)
T 3rfu_A          532 KGASVMFMAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDS--KRTAEAVAGTLGIKKV-VAEI  600 (736)
T ss_dssp             TTCEEEEEEETTEEEEEEEEECCBCSSHHHHHHHHHHHTCEEEEECSSC--HHHHHHHHHHHTCCCE-ECSC
T ss_pred             cCCeEEEEEECCEEEEEEEeeccchhhHHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHcCCCEE-EEec
Confidence            468899999998764    356788999999999999999999999853  3456677788998765 4444

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=93.97  E-value=0.024  Score=38.37  Aligned_cols=18  Identities=22%  Similarity=0.041  Sum_probs=14.5

Q ss_pred             cCCcEEEEeccCcccCCC
Q 033480           28 RRFKAWLLDQFGVLHDGK   45 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~   45 (118)
                      |.+++++||+||||.+..
T Consensus         2 Mm~~~viFD~DGtL~Ds~   19 (180)
T 3bwv_A            2 MTRQRIAIDMDEVLADTL   19 (180)
T ss_dssp             -CCCEEEEETBTTTBCHH
T ss_pred             CcccEEEEeCCCcccccH
Confidence            346899999999998854

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=93.68  E-value=0.026  Score=40.64  Aligned_cols=19  Identities=26%  Similarity=0.247  Sum_probs=16.4

Q ss_pred             cCCcEEEEeccCcccCCCc
Q 033480           28 RRFKAWLLDQFGVLHDGKK   46 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~   46 (118)
                      +.+++++||+||||++...
T Consensus        16 ~~~k~viFDlDGTLvds~~   34 (260)
T 2gfh_A           16 SRVRAVFFDLDNTLIDTAG   34 (260)
T ss_dssp             CCCCEEEECCBTTTBCHHH
T ss_pred             ccceEEEEcCCCCCCCCHH
Confidence            4689999999999998654

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=93.52  E-value=0.064  Score=44.42  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=52.1

Q ss_pred             cCCcEEEEeccCccc----CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      ...+.+++..||++.    -.+++.|++.++|++|+++|++++++|+.+  ...+....+.+|++.. |..+.
T Consensus       435 ~g~~~l~va~~~~~~G~i~~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~--~~~a~~ia~~lgi~~~-~~~~~  504 (645)
T 3j08_A          435 EAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDN--WRSAEAISRELNLDLV-IAEVL  504 (645)
T ss_dssp             TTCCCEEEEETTEEEEEEEEECCCTTTHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHHTCSEE-ECSCC
T ss_pred             cCCeEEEEEECCEEEEEEEecCCchhHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHcCCCEE-EEeCC
Confidence            457888888887654    456789999999999999999999999853  3456677788999866 45554

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=93.40  E-value=0.096  Score=41.88  Aligned_cols=73  Identities=10%  Similarity=0.149  Sum_probs=50.1

Q ss_pred             HHHHhhcCCcEEEEeccCcccCCC-----------------------------------------ccCccHHHHHHHHHH
Q 033480           22 RHIAETRRFKAWLLDQFGVLHDGK-----------------------------------------KPYPGAISTLEMLAT   60 (118)
Q Consensus        22 ~~~~~~~~~~~~~~D~DGtL~~~~-----------------------------------------~~~pga~e~L~~Lk~   60 (118)
                      ..++. .+...+++|+|.||.+..                                         ..=||+.+||+++. 
T Consensus        19 ~rll~-~~Kl~LVLDLDeTLiHs~~~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~~V~~RPgl~eFL~~ls-   96 (442)
T 3ef1_A           19 KRLRQ-EKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-   96 (442)
T ss_dssp             HHHHH-TTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHT-
T ss_pred             HHHHh-cCCeEEEEeeccceeccccccccchhccCCCCcchhhhccccceeeeeccCCceeEEEEEeCCCHHHHHHHHh-
Confidence            44554 578888999999997641                                         01389999999997 


Q ss_pred             CCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCc-eeeh
Q 033480           61 TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG-AITS   98 (118)
Q Consensus        61 ~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~-iits   98 (118)
                      +.+.++|.|++.+..  +...++.++.....|.. +++.
T Consensus        97 ~~yEivIfTas~~~Y--A~~Vl~~LDp~~~~f~~Rl~sR  133 (442)
T 3ef1_A           97 ELYELHIYTMGTKAY--AKEVAKIIDPTGKLFQDRVLSR  133 (442)
T ss_dssp             TTEEEEEECSSCHHH--HHHHHHHHCTTSTTTTTCEECT
T ss_pred             CCcEEEEEcCCCHHH--HHHHHHHhccCCccccceEEEe
Confidence            679999999986543  34566666665521454 5543

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=93.40  E-value=0.072  Score=38.98  Aligned_cols=20  Identities=30%  Similarity=0.499  Sum_probs=17.4

Q ss_pred             CCcEEEEeccCcccCCCccC
Q 033480           29 RFKAWLLDQFGVLHDGKKPY   48 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~   48 (118)
                      +++.++||+||||+.+...+
T Consensus        31 ~i~~viFD~dGTL~ds~~~~   50 (287)
T 3a1c_A           31 KVTAVIFDKTGTLTKGKPEV   50 (287)
T ss_dssp             HCCEEEEECCCCCBCSCCEE
T ss_pred             cCCEEEEeCCCCCcCCCEEE
Confidence            68999999999999987654

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=93.33  E-value=0.034  Score=38.94  Aligned_cols=18  Identities=22%  Similarity=0.191  Sum_probs=15.4

Q ss_pred             CCcEEEEeccCcccCCCc
Q 033480           29 RFKAWLLDQFGVLHDGKK   46 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~   46 (118)
                      .+++++||+||||++...
T Consensus        10 ~~k~viFDlDGTL~ds~~   27 (231)
T 2p11_A           10 HDIVFLFDCDNTLLDNDH   27 (231)
T ss_dssp             CSEEEEECCBTTTBCHHH
T ss_pred             CCeEEEEcCCCCCEecHH
Confidence            578999999999998653

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=93.31  E-value=0.056  Score=44.38  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=27.9

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC-C
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL-G   86 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~-g   86 (118)
                      .-|+..++|++|++.| +++++|||...  -+...++.+ |
T Consensus       247 kdp~l~~~L~~Lr~~G-KlfLiTNS~~~--yv~~~m~yllg  284 (555)
T 2jc9_A          247 KDGKLPLLLSRMKEVG-KVFLATNSDYK--YTDKIMTYLFD  284 (555)
T ss_dssp             CCTHHHHHHHHHHHHS-EEEEECSSCHH--HHHHHHHHHTC
T ss_pred             CChHHHHHHHHHHHcC-CEEEEeCCChH--HHHHHHHHhcC
Confidence            4578999999999999 99999998643  233445443 5

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=93.19  E-value=0.085  Score=42.50  Aligned_cols=50  Identities=20%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh-C--------CCCCcCCCceeehHH
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-L--------GFDPSLFAGAITSGE  100 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~-~--------gi~~~~fd~iits~~  100 (118)
                      -|....+|++|++.|.+++++|||+...  +...|+. +        ++..+ ||.||+.+.
T Consensus       188 ~~~l~~~L~~lr~~GKklFLiTNS~~~y--~~~~M~y~~~~~~~~g~dWrdl-FDvVIv~A~  246 (470)
T 4g63_A          188 EKEVVEGLKHFIRYGKKIFILTNSEYSY--SKLLLDYALSPFLDKGEHWQGL-FEFVITLAN  246 (470)
T ss_dssp             CHHHHHHHHHHHTTTCEEEEECSSCHHH--HHHHHHHHTGGGSCTTCCGGGG-CSEEEESCC
T ss_pred             CHhHHHHHHHHHHcCCeEEEeeCCCchH--HHHHHHhhcccCCCCCCChhhh-cCEEEECCC
Confidence            5889999999999999999999986432  2222322 3        56677 799888654

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=92.96  E-value=0.041  Score=37.87  Aligned_cols=17  Identities=41%  Similarity=0.315  Sum_probs=14.9

Q ss_pred             CCcEEEEeccCcccCCC
Q 033480           29 RFKAWLLDQFGVLHDGK   45 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~   45 (118)
                      ++++++||+||||.+..
T Consensus         3 ~~k~viFDlDGTL~Ds~   19 (197)
T 1q92_A            3 RALRVLVDMDGVLADFE   19 (197)
T ss_dssp             CCEEEEECSBTTTBCHH
T ss_pred             CceEEEEeCCCCCccCc
Confidence            67899999999999864

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}

Probab=92.27  E-value=0.3  Score=32.04  Aligned_cols=74  Identities=14%  Similarity=-0.036  Sum_probs=54.7

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC---ceeehHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA---GAITSGELTHQY  105 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd---~iits~~v~~~~  105 (118)
                      ..+.+++|+-++-.-+..-+.-..++.++++++|..+.++.-+    ..+.+.|+..|+... +.   .++.+-+.+.++
T Consensus        63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~~~~~~if~s~~~Al~~  137 (143)
T 3llo_A           63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCS----AQVVNDLTSNRFFEN-PALKELLFHSIHDAVLG  137 (143)
T ss_dssp             CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCC----HHHHHHHHHTTTTSS-GGGGGGEESSHHHHHHH
T ss_pred             CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHhCCCeec-cCccceEECcHHHHHHH
Confidence            5678999998887777766667778888889999998887422    347789999998764 32   577666665555


Q ss_pred             HH
Q 033480          106 LL  107 (118)
Q Consensus       106 l~  107 (118)
                      ++
T Consensus       138 ~~  139 (143)
T 3llo_A          138 SQ  139 (143)
T ss_dssp             TS
T ss_pred             HH
Confidence            43

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=91.67  E-value=0.16  Score=42.59  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=51.8

Q ss_pred             cCCcEEEEeccCccc----CCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCcee
Q 033480           28 RRFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAI   96 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~----~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~ii   96 (118)
                      ...+.+++..||++.    -.+++.|++.++|++|+++|++++++|+.  +...+....+.+|++.. |..+.
T Consensus       513 ~g~~~~~va~~~~~~G~i~i~D~~~~~~~~~i~~l~~~Gi~v~~~TGd--~~~~a~~ia~~lgi~~~-~~~~~  582 (723)
T 3j09_A          513 EAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGD--NWRSAEAISRELNLDLV-IAEVL  582 (723)
T ss_dssp             TTCEEEEEEETTEEEEEEEEECCSCTTHHHHHHHHHHTTCEEEEECSS--CHHHHHHHHHHHTCSEE-ECSCC
T ss_pred             cCCeEEEEEECCEEEEEEeecCCcchhHHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHcCCcEE-EccCC
Confidence            467888888887654    45678999999999999999999999985  33456677788998765 45543

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=91.31  E-value=0.089  Score=36.99  Aligned_cols=16  Identities=19%  Similarity=0.046  Sum_probs=14.1

Q ss_pred             CCcEEEEeccCcccCC
Q 033480           29 RFKAWLLDQFGVLHDG   44 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~   44 (118)
                      .+++++||+||||.+.
T Consensus         5 ~~k~viFD~DGTL~d~   20 (236)
T 2fea_A            5 RKPFIICDFDGTITMN   20 (236)
T ss_dssp             CCEEEEECCTTTTBSS
T ss_pred             CCcEEEEeCCCCCCcc
Confidence            4689999999999965

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*

Probab=90.73  E-value=0.26  Score=31.92  Aligned_cols=75  Identities=13%  Similarity=0.007  Sum_probs=53.9

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC--ceeehHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA--GAITSGELTHQYL  106 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd--~iits~~v~~~~l  106 (118)
                      +.+.+++|+-++-.-+..-+.-..++.++++++|..++++.-+    ..+.+.|+..|+... +.  .++.+-+.+.++.
T Consensus        48 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~~~~~i~~s~~~Al~~~  122 (130)
T 4dgh_A           48 TPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGAN----SRVSQKLVKAGIVKL-VGEQNVYPVFEGALSAA  122 (130)
T ss_dssp             CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCC----HHHHHHHHHTTHHHH-HCGGGEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHcCChhh-cCcccccCCHHHHHHHH
Confidence            5788999998887777666677777888889999998888422    347788888887543 22  4666666555554


Q ss_pred             Hh
Q 033480          107 LR  108 (118)
Q Consensus       107 ~~  108 (118)
                      +.
T Consensus       123 ~~  124 (130)
T 4dgh_A          123 LT  124 (130)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*

Probab=90.65  E-value=0.9  Score=29.43  Aligned_cols=77  Identities=13%  Similarity=0.009  Sum_probs=55.3

Q ss_pred             cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      .+.+.+++|+-|+=+-+..-.-......+.++..|.+++++.-+    ..+.+.|..+|++...+ .++.+-+.+.++++
T Consensus        41 ~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~----p~va~~l~~~G~~l~~i-~~~~~l~~Al~~l~  115 (123)
T 3zxn_A           41 VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIK----PAVAITLTEMGLDLRGM-ATALNLQKGLDKLK  115 (123)
T ss_dssp             SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCC----HHHHHHHHHTTCCSTTS-EEESSHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHhCCCccce-EEECCHHHHHHHHH
Confidence            46889999999987777665556667788888889998777432    34778888999873322 56666666767776


Q ss_pred             hc
Q 033480          108 RL  109 (118)
Q Consensus       108 ~~  109 (118)
                      +.
T Consensus       116 ~~  117 (123)
T 3zxn_A          116 NL  117 (123)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A

Probab=89.83  E-value=0.86  Score=28.47  Aligned_cols=69  Identities=9%  Similarity=0.070  Sum_probs=50.2

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      +.+.+++|+.++=+-+..-+--..++.+.++++|.++.++.-+    ..+.+.|+..|+... |  ++.+.+.+.+
T Consensus        41 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~--i~~~~~~Al~  109 (117)
T 1h4x_A           41 AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPS----PTMRKVFQFSGLGPW-M--MDATEEEAID  109 (117)
T ss_dssp             SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCC----HHHHHHHHHTTCGGG-E--ECSCHHHHHH
T ss_pred             CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhCCceE-E--EeCCHHHHHH
Confidence            4688999998887777666666677778888899998877422    357788999998876 5  5555444443

>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*

Probab=89.75  E-value=0.56  Score=30.22  Aligned_cols=68  Identities=10%  Similarity=0.049  Sum_probs=50.7

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~  102 (118)
                      ..+.+++|+.++-+-+..-+--..++.+.++++|..+.++.-+    ..+.+.|+..|+... | .++.+.+.+
T Consensus        51 ~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~-~i~~s~~~A  118 (125)
T 2ka5_A           51 GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPN----EKVERVLSLTNLDRI-V-KIYDTISEA  118 (125)
T ss_dssp             TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCC----HHHHHHHHHTTSTTT-S-EEESSHHHH
T ss_pred             CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHcCCCce-E-EecCCHHHH
Confidence            4678999998887777666666677888888899998888422    357789999999876 5 566554443

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=87.87  E-value=0.72  Score=40.11  Aligned_cols=46  Identities=13%  Similarity=0.150  Sum_probs=36.5

Q ss_pred             ccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        41 L~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +.-.+++-|++.++|++|+++|++++++|+.  +...+....+.+|+.
T Consensus       599 v~i~Dp~r~~~~~aI~~l~~aGI~vvmiTGd--~~~tA~~ia~~lgi~  644 (1034)
T 3ixz_A          599 VSMIDPPRATVPDAVLKCRTAGIRVIMVTGD--HPITAKAIAASVGII  644 (1034)
T ss_pred             EeccCCCchhHHHHHHHHHHcCCeEEEEeCC--CHHHHHHHHHHcCCC
Confidence            3344577899999999999999999999975  334566777888885

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=87.75  E-value=0.53  Score=40.73  Aligned_cols=45  Identities=13%  Similarity=0.316  Sum_probs=36.2

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+++-|++.++|+.|++.|++++++|+..  ...+....+.+|+...
T Consensus       601 ~D~lr~~~~~~I~~l~~~Gi~v~miTGD~--~~ta~~ia~~lgi~~~  645 (995)
T 3ar4_A          601 LDPPRKEVMGSIQLCRDAGIRVIMITGDN--KGTAIAICRRIGIFGE  645 (995)
T ss_dssp             ECCBCTTHHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHHTSSCT
T ss_pred             cCCCchhHHHHHHHHHHcCCEEEEECCCC--HHHHHHHHHHcCcCCC
Confidence            45678999999999999999999999853  3445677788888643

>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A

Probab=87.68  E-value=0.98  Score=27.98  Aligned_cols=69  Identities=12%  Similarity=0.087  Sum_probs=50.0

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ  104 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~  104 (118)
                      .+.+++|+.|+=+-+..-+--..++.+.++++|..+.++.-+    ..+.+.|+..|+... | .++.+-+.+.+
T Consensus        43 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~-~i~~~~~~Al~  111 (116)
T 1th8_B           43 IRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVS----PAVKRLFDMSGLFKI-I-RVEADEQFALQ  111 (116)
T ss_dssp             CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCC----HHHHHHHHHHTGGGT-S-EEESSHHHHHH
T ss_pred             CcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCC----HHHHHHHHHhCCcee-E-EEeCCHHHHHH
Confidence            688999998887777666666777888889999998876422    347788888898765 4 55655444433

>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}

Probab=87.40  E-value=0.48  Score=29.80  Aligned_cols=70  Identities=19%  Similarity=0.099  Sum_probs=51.0

Q ss_pred             EEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHHH
Q 033480           32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        32 ~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      .+++|+.++=+-+..-+--..++.+.++++|.++.++.-+    ..+.+.|+..|+... | .++.+.+.+.+.+.
T Consensus        44 ~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~-~i~~~~~~Al~~~~  113 (117)
T 4hyl_A           44 KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALVLVGVS----EEIRDTMEITGFWNF-F-TACASMDEALRILG  113 (117)
T ss_dssp             EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECCC----HHHHHHHHHHTCGGG-C-EEESCHHHHHHHHC
T ss_pred             eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhCccce-e-eecCCHHHHHHHhc
Confidence            8999998877777665555677778888899998887422    347788999999876 5 56666665555544

>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}

Probab=87.34  E-value=0.77  Score=29.20  Aligned_cols=71  Identities=13%  Similarity=0.059  Sum_probs=51.1

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHH-CCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLAT-TGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY  105 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~-~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~  105 (118)
                      +.+.+++|+.|+=+-+..-+--...+.+++++ +|.++.++.-+    ..+.+.|+..|+... | .++.+.+.+.+.
T Consensus        47 ~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~-~i~~~~~~Al~~  118 (121)
T 3t6o_A           47 QPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVS----PYCVEVLQVTHIDEV-W-PRYSTKQEALLA  118 (121)
T ss_dssp             SSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCC----HHHHHHHTTCSGGGG-S-CEESSHHHHHHH
T ss_pred             CCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCC----HHHHHHHHHhCccce-e-cccCCHHHHHHH
Confidence            57889999988777666555555667777888 89998887422    357789999999876 5 466665554443

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=86.24  E-value=0.69  Score=40.22  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=34.3

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +++-|++.++|++|++.|++++++|+.  +...+....+.+|+.
T Consensus       598 Dplr~~~~~aI~~l~~aGI~v~miTGD--~~~tA~~ia~~lgi~  639 (1028)
T 2zxe_A          598 DPPRAAVPDAVGKCRSAGIKVIMVTGD--HPITAKAIAKGVGII  639 (1028)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSS--CHHHHHHHHHHHTSS
T ss_pred             CCCChhHHHHHHHHHHcCCEEEEECCC--CHHHHHHHHHHcCCC
Confidence            467899999999999999999999975  434456667778876

>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A

Probab=86.03  E-value=2.3  Score=25.88  Aligned_cols=56  Identities=18%  Similarity=0.091  Sum_probs=43.1

Q ss_pred             cEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        31 ~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      +.+++|+.++-.-+..-+--..++.++++++|.++.++.-+    ..+.+.|+..|+...
T Consensus        45 ~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~  100 (110)
T 1sbo_A           45 KKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLK----ESISRILKLTHLDKI  100 (110)
T ss_dssp             SEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCC----HHHHHHHHHTTCGGG
T ss_pred             cEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHhCccce
Confidence            78999998877777666666677788888899998776422    347788999998765

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*

Probab=86.00  E-value=0.67  Score=30.21  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=51.0

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCC--ceeehHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA--GAITSGELTHQYL  106 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd--~iits~~v~~~~l  106 (118)
                      +.+.+++|+-++-.-+..-+.-..++.++++++|..++++.-+    ..+.+.|+..|+... +.  .++.+-+.+.+..
T Consensus        51 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~-~~~~~i~~t~~~Al~~~  125 (135)
T 4dgf_A           51 TPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVS----DRLYGALNRFGFIEA-LGEERVFDHIDKALAYA  125 (135)
T ss_dssp             CCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCC----HHHHHHHHHHTHHHH-HCGGGBCSSHHHHHHHH
T ss_pred             CCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHcCChhh-cCccceeCCHHHHHHHH
Confidence            5788999998877777666666777888889999999887432    346678888777533 22  3555555554444


Q ss_pred             H
Q 033480          107 L  107 (118)
Q Consensus       107 ~  107 (118)
                      +
T Consensus       126 ~  126 (135)
T 4dgf_A          126 K  126 (135)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=85.68  E-value=0.14  Score=39.91  Aligned_cols=66  Identities=21%  Similarity=0.244  Sum_probs=39.0

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC---CC-------------hHHHHHHHHhCCCCCcCCC
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS---RR-------------ASTTIDKLKSLGFDPSLFA   93 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~---r~-------------~~~~~~~L~~~gi~~~~fd   93 (118)
                      +|.++||+|||++.+.+.++-+.=.+.+|-.....+.+-+.-.   ..             ...+.+.|+..|+... +|
T Consensus         1 ~~~~~fdvdgv~~~~~~~~d~~~ltv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lk~~g~n~n-wd   79 (384)
T 1qyi_A            1 MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSN-WD   79 (384)
T ss_dssp             CCEEEECSBTTTBCSHHHHHHHHHHHHHHHHCTTTTCCSCCCCGGGCCHHHHHHHHHHHHTTTHHHHHHHHTTCCCH-HH
T ss_pred             CceEEEecCceeechhhhccHHHHHHHHHHcCccccCCCccCCcCCCcHHHHHHHHHHHhccHHHHHHHHHcccccC-Cc
Confidence            4789999999999998877655444555533322222222221   00             1145678888888665 45


Q ss_pred             cee
Q 033480           94 GAI   96 (118)
Q Consensus        94 ~ii   96 (118)
                      .++
T Consensus        80 ~~~   82 (384)
T 1qyi_A           80 MLF   82 (384)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            433

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=84.44  E-value=2.5  Score=28.47  Aligned_cols=37  Identities=27%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             cCcccCCCcc--CccH-HHHHHHHHHCCCcEEEEeCCCCC
Q 033480           38 FGVLHDGKKP--YPGA-ISTLEMLATTGAKMVVISNSSRR   74 (118)
Q Consensus        38 DGtL~~~~~~--~pga-~e~L~~Lk~~Gi~v~I~TN~~r~   74 (118)
                      +|+.+.+.+|  .|.. .++++.+++.|+.+.+.||+.-.
T Consensus         5 ~~v~~tGGEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~   44 (182)
T 3can_A            5 GGVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLAR   44 (182)
T ss_dssp             CCEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCC
T ss_pred             CEEEEEcccccCCHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence            4555566665  4666 69999999999999999998743

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=82.11  E-value=1.5  Score=37.86  Aligned_cols=59  Identities=15%  Similarity=0.282  Sum_probs=42.8

Q ss_pred             cCCcEEEEec---------cCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           28 RRFKAWLLDQ---------FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        28 ~~~~~~~~D~---------DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      ...+.+.+=.         =|.+.-.+++-|++.++|++|++.|+++.++|+-  +...+...-+.+|+.
T Consensus       508 ~G~RvL~vA~~~~e~~l~~lGli~i~Dp~R~ea~~aI~~l~~aGI~v~MiTGD--~~~TA~aIA~~lGI~  575 (920)
T 1mhs_A          508 RGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGD--AVGIARETSRQLGLG  575 (920)
T ss_dssp             SSCCCCEECCCSSSCSCCCCBBCCCCCCCCHHHHHHHHHHHHHTCEEEEEESS--CHHHHHHHHHHHTSS
T ss_pred             CCCEEEEEEEeccccccEEEEEEEEeccccccHHHHHHHHhhcCceEEEEcCC--CHHHHHHHHHHcCCC
Confidence            3456655533         3444456678899999999999999999999974  334455666778885

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=81.27  E-value=0.96  Score=32.16  Aligned_cols=27  Identities=15%  Similarity=0.161  Sum_probs=23.4

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSR   73 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r   73 (118)
                      ..++|++.++++.|+ +|+++ ++||+++
T Consensus       129 ~~~~~~~~~~l~~L~-~g~~~-i~tn~~~  155 (263)
T 1zjj_A          129 DLTYEKLKYATLAIR-NGATF-IGTNPDA  155 (263)
T ss_dssp             TCBHHHHHHHHHHHH-TTCEE-EESCCCS
T ss_pred             CCCHHHHHHHHHHHH-CCCEE-EEECCCc
Confidence            456899999999999 89998 9999864

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=80.34  E-value=1.5  Score=37.72  Aligned_cols=43  Identities=14%  Similarity=0.211  Sum_probs=34.7

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+++-|++.++|++|++.|+++.++|+-  +........+.+|+.
T Consensus       486 ~Dp~R~~a~~aI~~l~~aGI~v~MiTGD--~~~tA~~iA~~lGi~  528 (885)
T 3b8c_A          486 FDPPRHDSAETIRRALNLGVNVKMITGD--QLAIGKETGRRLGMG  528 (885)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCEEEESS--CHHHHTHHHHTTTCT
T ss_pred             ecccchhHHHHHHHHHHcCCcEEEEcCC--ChHHHHHHHHHhCCc
Confidence            4567899999999999999999999974  334455666788884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1yv9a1	253	c.108.1.14 (A:4-256) Putative hydrolase EF1188 {En	5e-14
d1wvia_	253	c.108.1.14 (A:) Putative phosphatase SMU.1415c {St	1e-13
d1vjra_	261	c.108.1.14 (A:) Hypothetical protein TM1742 {Therm	2e-13
d2c4na1	250	c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId	1e-10

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

 Score = 63.6 bits (153), Expect = 5e-14
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFD 88
           ++ +L+D  G ++ GK+P P     +E L       + ++N +++   T   +L +    
Sbjct: 2   YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDI 61

Query: 89  PSLFAGAITSGELTHQYL 106
               +   T+   T  Y+
Sbjct: 62  HVPASLVYTATLATIDYM 79

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 30  FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN-SSRRASTTIDKLKSLGFD 88
           +K +L+D  G ++ GK   P     ++ L       ++++N ++R      + L +    
Sbjct: 2   YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNI 61

Query: 89  PSLFAGAITSGELTHQYL 106
            +      T+   T  Y+
Sbjct: 62  KTPLETIYTATLATIDYM 79

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]} Length = 261

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 17/80 (21%), Positives = 35/80 (43%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88
           + + ++LD  G  +      PG++  LE L     + V  +N+S   +    +       
Sbjct: 6   KIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGV 65

Query: 89  PSLFAGAITSGELTHQYLLR 108
                  +TSGE+T +++L+
Sbjct: 66  DVPDDAVVTSGEITAEHMLK 85

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Length = 250

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

 Score = 54.3 bits (129), Expect = 1e-10
 Identities = 16/78 (20%), Positives = 27/78 (34%)

Query: 29  RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88
             K  + D  GVL       PGA   L  +   G  +V+++N   +    +    +    
Sbjct: 2   TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGV 61

Query: 89  PSLFAGAITSGELTHQYL 106
               +   TS   T  +L
Sbjct: 62  DVPDSVFYTSAMATADFL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.63
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.63
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	99.58
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	99.54
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.18
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	99.17
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.13
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	99.08
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.02
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	99.01
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	98.92
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	98.87
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	98.85
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	98.84
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	98.77
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	98.76
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	98.75
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	98.75
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	98.73
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	98.73
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	98.7
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	98.7
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	98.66
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	98.64
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	98.64
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	98.63
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	98.63
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	98.61
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	98.56
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	98.55
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	98.54
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	98.53
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	98.48
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	98.46
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	98.41
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	98.35
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	98.34
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	98.27
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	98.23
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	98.16
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	98.14
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	98.13
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	98.05
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	98.02
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	98.02
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	97.94
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	97.58
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	97.48
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	97.45
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	97.29
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	97.03
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	96.82
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	96.69
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	96.29
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	95.42
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	95.03
d1h4xa_	111	Anti-sigma factor antagonist SpoIIaa {Bacillus sph	93.7
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	93.35
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	92.57
d1vc1a_	110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	91.2
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	91.19
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	88.72
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	85.61

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=6.9e-16  Score=111.66  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=75.2

Q ss_pred             cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l  106 (118)
                      |.+|+++||+||||+++..++|++.++|+.|+++|++++++||++ +...++.++++.+|++... +.|+++.....+++
T Consensus         1 M~ik~VifDlDGTL~~~~~~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~~~~~l~~~G~~~~~-~~i~~~~~~~~~~l   79 (250)
T d2c4na1           1 MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFL   79 (250)
T ss_dssp             CCCCEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCG-GGEEEHHHHHHHHH
T ss_pred             CCCCEEEEECCCeeEECCCcCccHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHhhccccccc-eeEechHHHHHHHH
Confidence            789999999999999999999999999999999999999999987 6778888999999999874 89999999999988


Q ss_pred             Hhcc
Q 033480          107 LRLI  110 (118)
Q Consensus       107 ~~~~  110 (118)
                      ++..
T Consensus        80 ~~~~   83 (250)
T d2c4na1          80 RRQE   83 (250)
T ss_dssp             HTSS
T ss_pred             Hhhh
Confidence            7664

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=4.2e-16  Score=112.86  Aligned_cols=89  Identities=25%  Similarity=0.417  Sum_probs=80.0

Q ss_pred             HHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHhCCCCCcCCCceeehHHHH
Q 033480           24 IAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKSLGFDPSLFAGAITSGELT  102 (118)
Q Consensus        24 ~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~~gi~~~~fd~iits~~v~  102 (118)
                      +++  ++++++||+||||+++.+++|++.++|++|+++|++++++||++ ++...+.+.++.+|++... +.+++|++..
T Consensus         3 ~~~--~ik~vlFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~TN~~~~~~~~~~~~~~~~g~~~~~-~~v~ts~~~~   79 (261)
T d1vjra_           3 VLD--KIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPD-DAVVTSGEIT   79 (261)
T ss_dssp             GGG--GCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCCCG-GGEEEHHHHH
T ss_pred             hHH--hCCEEEEeCCCeeEECCccCchHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhhcccccc-ceeccHHHHH
Confidence            456  89999999999999999999999999999999999999999986 6677888999999999874 8999999999


Q ss_pred             HHHHHhccCCCcc
Q 033480          103 HQYLLRLIIASSV  115 (118)
Q Consensus       103 ~~~l~~~~~~~~v  115 (118)
                      .+++.+...+.++
T Consensus        80 ~~~~~~~~~~~~~   92 (261)
T d1vjra_          80 AEHMLKRFGRCRI   92 (261)
T ss_dssp             HHHHHHHHCSCEE
T ss_pred             HHHHHHhcCCceE
Confidence            9999887766554

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.58  E-value=3.8e-15  Score=107.58  Aligned_cols=87  Identities=18%  Similarity=0.299  Sum_probs=75.9

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHh-CCCCCcCCCceeehHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~-~gi~~~~fd~iits~~v~~~~l  106 (118)
                      +|++++||+||||+++.+++|++.++|++|++.|++++++||++ ++...+.+.|.. +|+... .+.++++..+..+|+
T Consensus         1 ~yk~v~fDlDGTL~~~~~~i~~a~~~i~~l~~~g~~~~~~Tn~s~~~~~~~~~~L~~~~~~~~~-~~~i~~~~~~~~~~l   79 (253)
T d1yv9a1           1 DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVP-ASLVYTATLATIDYM   79 (253)
T ss_dssp             SCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCC-GGGEEEHHHHHHHHH
T ss_pred             CCCEEEEcCCCccEeCCCcCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHhcCCccc-cccccCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999987 667777777754 788877 489999999999999


Q ss_pred             HhccCCCccc
Q 033480          107 LRLIIASSVI  116 (118)
Q Consensus       107 ~~~~~~~~v~  116 (118)
                      ++.....+++
T Consensus        80 ~~~~~~~~~~   89 (253)
T d1yv9a1          80 KEANRGKKVF   89 (253)
T ss_dssp             HHHCCCSEEE
T ss_pred             HhccCCCeEE
Confidence            9987666544

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=99.54  E-value=7.7e-15  Score=106.22  Aligned_cols=86  Identities=16%  Similarity=0.296  Sum_probs=75.7

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCC-CChHHHHHHHHh-CCCCCcCCCceeehHHHHHHHHH
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS-RRASTTIDKLKS-LGFDPSLFAGAITSGELTHQYLL  107 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~-r~~~~~~~~L~~-~gi~~~~fd~iits~~v~~~~l~  107 (118)
                      ||+++||+||||+++..++|++.++|+.|++.|++++++||++ ++.+.+.+.++. +++... .+.++++..+..++++
T Consensus         2 yk~vlFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~TN~s~~~~~~~~~~l~~~~~~~~~-~~~i~~~~~~~~~~l~   80 (253)
T d1wvia_           2 YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTP-LETIYTATLATIDYMN   80 (253)
T ss_dssp             CCEEEEECBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHHHHSCCCC-GGGEEEHHHHHHHHHH
T ss_pred             cCEEEEcCcCceEECCCcCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHhhcCcccc-ccccccHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999987 666777788854 788777 4899999999999999


Q ss_pred             hccCCCccc
Q 033480          108 RLIIASSVI  116 (118)
Q Consensus       108 ~~~~~~~v~  116 (118)
                      +...++.++
T Consensus        81 ~~~~~~~~~   89 (253)
T d1wvia_          81 DMKRGKTAY   89 (253)
T ss_dssp             HHCCCSEEE
T ss_pred             HhccCceee
Confidence            888776653

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.5e-11  Score=82.54  Aligned_cols=70  Identities=17%  Similarity=0.057  Sum_probs=55.3

Q ss_pred             CcEEEEeccCcccCC-------------------------CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           30 FKAWLLDQFGVLHDG-------------------------KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~-------------------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      .|.++||+||||+..                         ..++||+.++|++|+++|++++|+||+++.. .....++.
T Consensus         5 pK~viFDlDGTL~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~-~~~~~l~~   83 (164)
T d1u7pa_           5 PKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQ-GANQLLEL   83 (164)
T ss_dssp             CSEEEECCBTTTBSSCTTTTCCSCEEECTTSCEEETTCCEECCCTTHHHHHHHHHHTTCCEEEEECCSCHH-HHHHHHHH
T ss_pred             CCEEEEcCCCcccCCccccccCccHhHHhcchHhhhhccccccchHHHHHHHHHHHCCCcEEEEeccccch-hhccchhc
Confidence            589999999999753                         1468999999999999999999999986532 23456788


Q ss_pred             CCCCCcCCCceeehHHH
Q 033480           85 LGFDPSLFAGAITSGEL  101 (118)
Q Consensus        85 ~gi~~~~fd~iits~~v  101 (118)
                      +++..+ |+.+......
T Consensus        84 ~~~~~~-~~~~~~~~kp   99 (164)
T d1u7pa_          84 FDLGKY-FIQREIYPGS   99 (164)
T ss_dssp             TTCGGG-CSEEEESSSC
T ss_pred             cccccc-ceeeecccCC
Confidence            999887 5776665443

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=2.6e-11  Score=84.14  Aligned_cols=53  Identities=17%  Similarity=0.200  Sum_probs=46.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++  ..+...++.+|+..+ |+.+++++++
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~--~~~~~~l~~~~l~~~-F~~i~~~~~~  140 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPL--HMLEKVLTMFDLRDS-FDALASAEKL  140 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEECTTS
T ss_pred             cccchHHHHHHHhhhccccccccccccc--ccccccccccccccc-cccccccccc
Confidence            3589999999999999999999999854  446788999999998 7999998764

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.13  E-value=4.7e-11  Score=81.94  Aligned_cols=51  Identities=18%  Similarity=0.346  Sum_probs=43.9

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .++||+.++|++|+++|++++|+||+++   .+.+.|+.+++..+ ||.++++++
T Consensus        79 ~~~~gv~~~l~~l~~~g~~~~i~Sn~~~---~~~~~l~~~~l~~~-fd~i~~~~~  129 (187)
T d2fi1a1          79 ILFEGVSDLLEDISNQGGRHFLVSHRND---QVLEILEKTSIAAY-FTEVVTSSS  129 (187)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCT---HHHHHHHHTTCGGG-EEEEECGGG
T ss_pred             cccchhHHHHHHHHhhhccccccccCcc---chhhhhhhhccccc-ccccccccc
Confidence            4679999999999999999999999754   24467899999998 799999875

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.2e-10  Score=83.12  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             hcCCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           27 TRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        27 ~~~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      +|.+|.++||+||||+.... +.|.+.++|++|+++|++++++|+++.  ..+.+.++.+++..+ ++.+++.+.
T Consensus         1 ~~~iKli~~DlDGTL~~~~~~i~~~~~~al~~L~~~gi~v~i~TGR~~--~~~~~~~~~l~l~~~-~~~~i~~nG   72 (271)
T d1rkqa_           1 SLAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPY--AGVHNYLKELHMEQP-GDYCITYNG   72 (271)
T ss_dssp             CCCCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSCG--GGTHHHHHHTTCCST-TCEEEEGGG
T ss_pred             CCCeeEEEEeCCccccCCCCccCHHHHHHHHHHHHCCCEEEEECCCCH--HHHHHHHHHhcCcCC-CcEEEEcCc
Confidence            58899999999999987655 558899999999999999999998653  446678888888765 355665543

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.02  E-value=1.6e-10  Score=79.56  Aligned_cols=52  Identities=23%  Similarity=0.343  Sum_probs=44.2

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++|+||+++   .....|+++|+..+ |+.++++++.
T Consensus        82 ~~~pgv~~~L~~L~~~g~~~~v~Sn~~~---~~~~~l~~~gl~~~-f~~i~~s~~~  133 (204)
T d2go7a1          82 VLMPGAREVLAWADESGIQQFIYTHKGN---NAFTILKDLGVESY-FTEILTSQSG  133 (204)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCT---HHHHHHHHHTCGGG-EEEEECGGGC
T ss_pred             cccchHHhhhhcccccccchhhhcccch---hhhhhhhhcccccc-cccccccccc
Confidence            5689999999999999999999999754   24467899999999 7999987643

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=99.01  E-value=2.5e-10  Score=78.77  Aligned_cols=52  Identities=27%  Similarity=0.424  Sum_probs=45.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|++|+++|++++++||+++  ..+...++.+|+..+ |+.++++.+.
T Consensus        96 l~~~~~~~L~~L~~~g~~~~i~tn~~~--~~~~~~l~~~gl~~~-f~~~~~~~~~  147 (224)
T d2hsza1          96 LYPNVKETLEALKAQGYILAVVTNKPT--KHVQPILTAFGIDHL-FSEMLGGQSL  147 (224)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHTTCGGG-CSEEECTTTS
T ss_pred             hHHHHHHHHHHHhccCCcccccccccH--HHHHHHHHhcCchhh-cccccccccc
Confidence            579999999999999999999999854  346788999999998 7999988764

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=98.92  E-value=2.8e-10  Score=78.63  Aligned_cols=52  Identities=21%  Similarity=0.369  Sum_probs=43.8

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      +++||+.++|++|++ +++++|+||+.+  ..+...++.+|+..+ |+.++++++.
T Consensus        82 ~~~~g~~~~L~~l~~-~~~~~ivT~~~~--~~~~~~l~~~~l~~~-f~~i~~~~~~  133 (207)
T d2hdoa1          82 ELYPGITSLFEQLPS-ELRLGIVTSQRR--NELESGMRSYPFMMR-MAVTISADDT  133 (207)
T ss_dssp             EECTTHHHHHHHSCT-TSEEEEECSSCH--HHHHHHHTTSGGGGG-EEEEECGGGS
T ss_pred             ccccchhhhhhhhcc-cccccccccccc--ccccccccccccccc-cccccccccc
Confidence            468999999999975 699999999754  457789999999998 7999988754

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=98.87  E-value=9.2e-10  Score=78.13  Aligned_cols=54  Identities=15%  Similarity=0.106  Sum_probs=44.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|++|+++|++++|+||+++  ..+...|+.+|+..+++|.+++++++
T Consensus        99 ~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~--~~~~~~l~~~~l~~~f~d~~~~~d~~  152 (257)
T d1swva_          99 SPINGVKEVIASLRERGIKIGSTTGYTR--EMMDIVAKEAALQGYKPDFLVTPDDV  152 (257)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEBCSSCH--HHHHHHHHHHHHTTCCCSCCBCGGGS
T ss_pred             ccCCcHHHHHHHHHhcccceeecCCCch--hhHHHHHHHHhhcccccccccccccc
Confidence            4689999999999999999999999754  34667888889988744788888764

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=2.3e-09  Score=75.34  Aligned_cols=51  Identities=18%  Similarity=0.313  Sum_probs=42.5

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++||+.++|+.|+ +|++++++||++.  ......++.+|+..+ ||.+++|+++
T Consensus       110 ~~~~~~~~L~~L~-~~~~l~i~Tn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~  160 (247)
T d2gfha1         110 LADDVKAMLTELR-KEVRLLLLTNGDR--QTQREKIEACACQSY-FDAIVIGGEQ  160 (247)
T ss_dssp             CCHHHHHHHHHHH-TTSEEEEEECSCH--HHHHHHHHHHTCGGG-CSEEEEGGGS
T ss_pred             cCccHHHHHHHhh-cccceEEeecccc--hhhhhhhhhcccccc-cccccccccc
Confidence            4688999999997 5899999999753  345678899999998 7999998775

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.84  E-value=1.5e-09  Score=71.55  Aligned_cols=44  Identities=27%  Similarity=0.289  Sum_probs=39.2

Q ss_pred             CCcEEEEeccCcccCC-------------CccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDG-------------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~-------------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      +.++++||+||||...             ..++||+.++|+.|+++|+.++++||.+
T Consensus         6 kpk~vifDiDgTL~~~~~~~~~~~~~~~~~~~~p~v~~~l~~l~~~G~~Iii~T~R~   62 (149)
T d1ltqa1           6 KPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRE   62 (149)
T ss_dssp             SCEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCcEEEEEcCCCcEeCCCCCcCCccccccCccCHHHHHHHHHHHhccCeEEEEecCc
Confidence            5689999999999642             3579999999999999999999999986

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=4e-09  Score=72.56  Aligned_cols=43  Identities=28%  Similarity=0.379  Sum_probs=38.5

Q ss_pred             CcEEEEeccCcccCC---------CccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           30 FKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      ++++|||+||||..+         .+++||+.++|++|+++|++++++||.+
T Consensus         2 ~~Av~~DrDGtl~~~~~y~~~~~~~~~~~gv~e~l~~L~~~g~~~~ivTNq~   53 (182)
T d2gmwa1           2 VPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQS   53 (182)
T ss_dssp             BCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred             CCEEEEeCCCCccCCCCCCCCHHHeeECCCHHHHHHHHhhcCchhhhhhccc
Confidence            689999999999643         2579999999999999999999999975

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=8.1e-09  Score=73.76  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +|.+++|+||||+.+.. +-|.+.++|++|+++|++++++|+++  ...+...++.++++.
T Consensus         1 iKli~~DlDGTLl~~~~~i~~~~~~~l~~l~~~Gi~~~i~TGR~--~~~~~~~~~~l~~~~   59 (285)
T d1nrwa_           1 MKLIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTGRA--HFDVMSIFEPLGIKT   59 (285)
T ss_dssp             CCEEEEECCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHGGGTCCC
T ss_pred             CeEEEEECCccccCCCCccCHHHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHhCCCc
Confidence            57899999999997765 45889999999999999999999764  455778888888764

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=98.75  E-value=2.1e-08  Score=66.18  Aligned_cols=66  Identities=15%  Similarity=0.203  Sum_probs=53.3

Q ss_pred             CcEEEEeccCcccCC-------CccCccHHHHHHHHHHCCCcEEEEeCCCC-C------------hHHHHHHHHhCCCCC
Q 033480           30 FKAWLLDQFGVLHDG-------KKPYPGAISTLEMLATTGAKMVVISNSSR-R------------ASTTIDKLKSLGFDP   89 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~-------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~------------~~~~~~~L~~~gi~~   89 (118)
                      ++.++||+||||...       ..|++++.+.|++|++.|..+++.|+++. +            .....+.|+..|++ 
T Consensus         1 mK~i~~DiDGTI~~~~~~~y~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~-   79 (124)
T d1xpja_           1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVP-   79 (124)
T ss_dssp             CCEEEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCC-
T ss_pred             CCEEEEeCCCCeECCCCCCcCccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCC-
Confidence            367999999999653       35899999999999999999999998752 1            23467889999985 


Q ss_pred             cCCCceeeh
Q 033480           90 SLFAGAITS   98 (118)
Q Consensus        90 ~~fd~iits   98 (118)
                        ||.++..
T Consensus        80 --Yd~Li~g   86 (124)
T d1xpja_          80 --YDEILVG   86 (124)
T ss_dssp             --CSEEEEC
T ss_pred             --ceEEEEC
Confidence              6888754

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.75  E-value=5.1e-09  Score=72.91  Aligned_cols=51  Identities=18%  Similarity=0.207  Sum_probs=44.1

Q ss_pred             ccCccHHHHHHHHHHCC-CcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           46 KPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~G-i~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      .++||+.++|+.|+++| ++++|+||+++  ..+...|+.+|+..+ ||.+++++
T Consensus        91 ~~~~g~~~~L~~L~~~g~~~~~v~t~~~~--~~~~~~l~~~gl~~~-fd~i~~~~  142 (228)
T d2hcfa1          91 TLLEGVRELLDALSSRSDVLLGLLTGNFE--ASGRHKLKLPGIDHY-FPFGAFAD  142 (228)
T ss_dssp             EECTTHHHHHHHHHTCTTEEEEEECSSCH--HHHHHHHHTTTCSTT-CSCEECTT
T ss_pred             eecCchHHHHhhhhccccccccccCCCcc--hhhhhhhhhhccccc-cccccccc
Confidence            46899999999999987 89999999854  456788999999998 79999875

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.4e-08  Score=68.52  Aligned_cols=58  Identities=19%  Similarity=0.187  Sum_probs=48.1

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      .-.+|+|+||||+.... +.+.+.++|++|+++|++++++|++  +...+.+.++.+++..
T Consensus         4 ~~li~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~i~TGR--~~~~~~~~~~~~~~~~   62 (232)
T d1xvia_           4 PLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSK--TSAEMLYLQKTLGLQG   62 (232)
T ss_dssp             CEEEEEECTTTTSCSSCCSCCTTHHHHHHHHHTTCCEEEECSS--CHHHHHHHHHHTTCTT
T ss_pred             CEEEEEECCCCccCCcCcCCHHHHHHHHHHHHCCCEEEEEeCC--ChhhchhHHHHhccCC
Confidence            34688899999997654 6699999999999999999999976  4456778888898864

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=98.73  E-value=2.4e-09  Score=75.98  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             CCcEEEEeccCcccCC---------CccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~---------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      +++++|||.||||..+         .+++||+.|+|++|+++|++++|+||.+
T Consensus        22 ~~~Aif~DrDGtl~~~~~y~~~~~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~   74 (209)
T d2o2xa1          22 HLPALFLDRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQS   74 (209)
T ss_dssp             SCCCEEECSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECH
T ss_pred             CCCEEEEeCCCCeECCCCCCCCHHHeEecccHHHHHHHHHhhCCeEEEecccc
Confidence            5689999999999653         2579999999999999999999999953

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=7.3e-09  Score=70.71  Aligned_cols=43  Identities=33%  Similarity=0.414  Sum_probs=38.2

Q ss_pred             CcEEEEeccCcccCCC------------ccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           30 FKAWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      .|++|||+||||..+.            .++||+.++|+.|+++|++++++||.+
T Consensus         2 ~K~i~~D~DGtL~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~   56 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQD   56 (161)
T ss_dssp             CEEEEECCBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECT
T ss_pred             CcEEEEeCCCCeEeeCCCCCccCCHHHceECccHHHHHHHHHHcCCceeeecccc
Confidence            4799999999997642            468999999999999999999999975

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.70  E-value=1e-08  Score=71.20  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             CcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      +|.+|+|+||||+++.. .+.+.++|++|+++|+.++++|+++  ...+...++.+++..
T Consensus         2 iKli~~DlDGTLl~~~~-~~~~~~ai~~l~~~G~~~~~aTGR~--~~~~~~~~~~~~~~~   58 (243)
T d1wzca1           2 IRLIFLDIDKTLIPGYE-PDPAKPIIEELKDMGFEIIFNSSKT--RAEQEYYRKELEVET   58 (243)
T ss_dssp             EEEEEECCBTTTBSSSC-SGGGHHHHHHHHHTTEEEEEECSSC--HHHHHHHHHHHTCCS
T ss_pred             cEEEEEeCCCCCCCCCC-CHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHHhcccc
Confidence            68999999999997665 4778999999999999999999864  456777888888753

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.66  E-value=2.6e-08  Score=65.49  Aligned_cols=57  Identities=18%  Similarity=0.264  Sum_probs=46.8

Q ss_pred             EEEEeccCcccCC-----CccCccHHHHHHHHHHCCCcEEEEeCCCC-ChHHHHHHHHhCCCC
Q 033480           32 AWLLDQFGVLHDG-----KKPYPGAISTLEMLATTGAKMVVISNSSR-RASTTIDKLKSLGFD   88 (118)
Q Consensus        32 ~~~~D~DGtL~~~-----~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-~~~~~~~~L~~~gi~   88 (118)
                      .+++|+||||...     .+|+|++.+.|++|+++|..+++.|+++. ......+-|+..|++
T Consensus         2 ti~vDiDGTl~~~~~~~~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~   64 (122)
T d2obba1           2 TIAVDFDGTIVEHRYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE   64 (122)
T ss_dssp             EEEECCBTTTBCSCTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCC
T ss_pred             EEEEEcCCCcCCCCCCccccccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCC
Confidence            4789999999653     35899999999999999999999998762 335566788888876

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=98.64  E-value=1.9e-08  Score=69.40  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=43.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+++|++++++||+.+    ....++.+|+..+ |+.+++++++
T Consensus        91 ~~~~g~~~~l~~l~~~~~~i~i~s~~~~----~~~~l~~~~l~~~-f~~i~~~~~~  141 (221)
T d1o08a_          91 DVYPGILQLLKDLRSNKIKIALASASKN----GPFLLERMNLTGY-FDAIADPAEV  141 (221)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCSCTT----HHHHHHHTTCGGG-CSEECCTTTS
T ss_pred             cccCCceeccccccccccceEEEeecch----hhHHHHhhccccc-cccccccccc
Confidence            4689999999999999999999998643    3467889999998 7999988664

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=1.2e-08  Score=72.56  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=46.4

Q ss_pred             CCcEEEEeccCcccCCCccC--ccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~--pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+|.+++|+||||+++...+  |.+.++|++|+++|++++++|++  +...+...++.+++.
T Consensus         1 ~IKli~~DlDGTLl~~~~~~~~~~~~~~l~~l~~~gi~~~i~TGR--~~~~~~~~~~~l~~~   60 (269)
T d1rlma_           1 AVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGN--QYYQLISFFPELKDE   60 (269)
T ss_dssp             CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHHHTCEEEEECSS--CHHHHGGGCTTTTTT
T ss_pred             CEEEEEEeCCccCcCCCCcCChHHHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHhCcc
Confidence            37899999999998765533  67999999999999999999975  444556666777765

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4e-08  Score=68.97  Aligned_cols=66  Identities=18%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCC-------------------------------------------------------
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDG-------------------------------------------------------   44 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~-------------------------------------------------------   44 (118)
                      ++++++.  ..++++||+||||.+.                                                       
T Consensus         2 ~~~~~~~--~~~aV~FD~DGTLi~~e~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (217)
T d1nnla_           2 ELRKLFY--SADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQ   79 (217)
T ss_dssp             HHHHHHH--HCSEEEEETBTTTBSSCHHHHHHHHTTCTTTC------------CHHHHHHHHHHHHCCCHHHHHHHHHHS
T ss_pred             chhHhhC--CCCEEEEcCccccCCccHHHHHHHHcCChHHHHHHHHHHHcCCCCHHHHHHHHHHhcccchHHHHHHHHhh
Confidence            4677777  8889999999999863                                                       


Q ss_pred             -CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           45 -KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        45 -~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                       .++.||+.++|++|+++|++++|+|++..  ..+...++.+|++.
T Consensus        80 ~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~--~~v~~i~~~lgi~~  123 (217)
T d1nnla_          80 PPHLTPGIRELVSRLQERNVQVFLISGGFR--SIVEHVASKLNIPA  123 (217)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCCG
T ss_pred             ccccCHHHHHHHHHHHhCCCEEEEECCCch--HHHHHHHHHhCCcc
Confidence             13579999999999999999999998743  44667788899874

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.63  E-value=3.9e-08  Score=67.47  Aligned_cols=59  Identities=12%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             CCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP   89 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~   89 (118)
                      ++|.++||+||||+++.. +.+.+.++|++|+++|++++++|+++  ...+...+...++..
T Consensus         1 kiK~i~~D~DGTL~~~~~~i~~~~~~~l~~l~~~gi~v~~~TGR~--~~~~~~~~~~~~~~~   60 (230)
T d1wr8a_           1 KIKAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNT--VQFAEAASILIGTSG   60 (230)
T ss_dssp             CCCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEECSSC--HHHHHHHHHHHTCCS
T ss_pred             CceEEEEecCCCCcCCCCccCHHHHHHHHHHHhCCCeEEEEeCCc--HHHHHHHHHhcCCCc
Confidence            578999999999998664 66899999999999999999999864  344556666666653

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=98.61  E-value=1.8e-08  Score=71.46  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=44.4

Q ss_pred             hcCCcEEEEeccCcccCC--CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC
Q 033480           27 TRRFKAWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL   85 (118)
Q Consensus        27 ~~~~~~~~~D~DGtL~~~--~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~   85 (118)
                      .+++|.++||+||||+.+  ..+.|.+.++|++|+++|++++++|+++  ...+...++.+
T Consensus         7 ~~~ikli~~DlDGTLl~~~~~~i~~~~~~al~~l~~~Gi~v~i~TGR~--~~~~~~~~~~l   65 (283)
T d2b30a1           7 GADIKLLLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTGRS--KVGILSAFGEE   65 (283)
T ss_dssp             TCCCCEEEEETBTTTBCCTTTCSCHHHHHHHHHHHHHTCEEEEECSSC--HHHHHHHHCHH
T ss_pred             ccCccEEEEECCCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCC--HHHHHHHHHHh
Confidence            357999999999999843  3567899999999999999999999865  33344444433

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=98.56  E-value=7.9e-08  Score=65.87  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=44.5

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++|++.++++.++++|++++++||+..  ......+++.++..+ ||.+++|.++
T Consensus        94 ~~~~~~~~l~~l~~~~~~~~i~tn~~~--~~~~~~~~~~~~~~~-fd~~~~s~~~  145 (220)
T d1zrna_          94 PFSEVPDSLRELKRRGLKLAILSNGSP--QSIDAVVSHAGLRDG-FDHLLSVDPV  145 (220)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEESGGG
T ss_pred             ccchhHHHHHHHHhcCCeEEeecchHH--HHHHHHHhhcccccc-ccceeeeeee
Confidence            568899999999999999999999854  345678888999988 7999999874

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.8e-08  Score=66.77  Aligned_cols=54  Identities=13%  Similarity=0.022  Sum_probs=40.3

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCCh-H-HHHHHHHhCCCCCcCCCceeehHHH
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRA-S-TTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~-~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ++|++.++|..|+++|++++++||+.... . .........++..+ ||.+++|+++
T Consensus       100 ~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~-fd~i~~s~~~  155 (225)
T d1zd3a1         100 INRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMH-FDFLIESCQV  155 (225)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTT-SSEEEEHHHH
T ss_pred             CCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhh-ccEEEecccc
Confidence            47788899999999999999999976432 1 22233345667777 7999998874

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.54  E-value=3.4e-08  Score=70.25  Aligned_cols=43  Identities=23%  Similarity=0.282  Sum_probs=37.2

Q ss_pred             cEEEEeccCcccCC-Cc-cCccHHHHHHHHHHCCCcEEEEeCCCC
Q 033480           31 KAWLLDQFGVLHDG-KK-PYPGAISTLEMLATTGAKMVVISNSSR   73 (118)
Q Consensus        31 ~~~~~D~DGtL~~~-~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r   73 (118)
                      |.+|||+||||++. .. +-+.+.++|++|+++|++++++|+++.
T Consensus         2 k~if~DlDGTL~~~~~~~i~~~~~~al~~l~~~gi~v~~~TGR~~   46 (260)
T d2rbka1           2 KALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPK   46 (260)
T ss_dssp             CEEEECSBTTTBCTTTSSCCHHHHHHHHHHHHTTCEEEEECSSCG
T ss_pred             eEEEEECCCCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCH
Confidence            78999999999864 33 457899999999999999999998763

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.53  E-value=6.1e-08  Score=66.24  Aligned_cols=52  Identities=25%  Similarity=0.329  Sum_probs=42.4

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+.+ ++++++||+++  ......++.+|+..+ ||.++++.+.
T Consensus        84 ~~~~~~~~~l~~l~~~-~~~~i~t~~~~--~~~~~~l~~~gl~~~-fd~v~~~~~~  135 (210)
T d2ah5a1          84 QLFPQIIDLLEELSSS-YPLYITTTKDT--STAQDMAKNLEIHHF-FDGIYGSSPE  135 (210)
T ss_dssp             EECTTHHHHHHHHHTT-SCEEEEEEEEH--HHHHHHHHHTTCGGG-CSEEEEECSS
T ss_pred             cchhHHHHHHhhhhcc-cchhhcccccc--hhhhHHHHhhccccc-cccccccccc
Confidence            4589999999999876 58999999854  446688999999998 7999986553

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-07  Score=64.79  Aligned_cols=46  Identities=9%  Similarity=0.026  Sum_probs=36.5

Q ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCce
Q 033480           47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGA   95 (118)
Q Consensus        47 ~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~i   95 (118)
                      ++||+.++|++|+++|++++|+||+++.  .....++..|+..+ |+..
T Consensus       128 ~~pg~~e~l~~L~~~g~~l~i~Tn~~~~--~~~~~~~~~~~~~~-~~~~  173 (253)
T d1zs9a1         128 FFADVVPAVRKWREAGMKVYIYSSGSVE--AQKLLFGHSTEGDI-LELV  173 (253)
T ss_dssp             CCTTHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHHTBTTBCC-GGGC
T ss_pred             cCCCHHHHHHHHhhccCceeecCCCcHH--HHHHHHHHcCcchh-hhhc
Confidence            4799999999999999999999998653  35567788888765 3433

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=7.4e-08  Score=65.97  Aligned_cols=56  Identities=11%  Similarity=0.035  Sum_probs=44.3

Q ss_pred             CccCccHHHHHHHHHHCCCcEEEEeCCCCC--hHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           45 KKPYPGAISTLEMLATTGAKMVVISNSSRR--ASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        45 ~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~--~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      ..++|++.++|++|+++|++++++||+...  .......+...|+..+ ||.+++++++
T Consensus        96 ~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~-fd~i~~s~~~  153 (222)
T d1cr6a1          96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQH-FDFLIESCQV  153 (222)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGG-CSEEEEHHHH
T ss_pred             CCCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChHhh-hceeeehhhc
Confidence            456889999999999999999999997432  1223445677889888 7999999875

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.41  E-value=1.6e-07  Score=65.28  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=46.2

Q ss_pred             CCcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           29 RFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      .+|.++||+||||+++.. +.|++.++|++|+++|++++++|+++.  ..+......+|+.
T Consensus         2 miKli~~D~DGTL~~~~~~i~~~~~~al~~l~~~g~~v~~~TGr~~--~~~~~~~~~~~~~   60 (225)
T d1l6ra_           2 MIRLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVI--PVVYALKIFLGIN   60 (225)
T ss_dssp             CCCEEEEEHHHHSBCTTSCBCHHHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHTCC
T ss_pred             CeEEEEEecCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCch--hhhHHHHHHcCCC
Confidence            578999999999996654 668999999999999999999998643  3344555666664

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.5e-07  Score=64.56  Aligned_cols=53  Identities=19%  Similarity=0.096  Sum_probs=39.8

Q ss_pred             CCcEEEEeccCcccCCC-ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           29 RFKAWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~-~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      +.|.++||+||||+++. .+.|.+.++|++|+++|+ ++++|++  +.......+..
T Consensus         2 ~~kl~~fDlDGTLl~~~~~i~~~~~~al~~l~~~g~-~~i~Tgr--~~~~~~~~~~~   55 (243)
T d2amya1           2 GPALCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIK-IGVVGGS--DFEKVQEQLGN   55 (243)
T ss_dssp             CSEEEEEESBTTTBCTTSCCCHHHHHHHHHHTTTSE-EEEECSS--CHHHHHHHHCT
T ss_pred             CCEEEEEcCcCCeeCCCCcCCHHHHHHHHHHHcCCC-EEEEcCC--ChHHhHHHHhh
Confidence            46889999999999765 466999999999998875 7888875  33333444433

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=98.34  E-value=3.2e-07  Score=63.32  Aligned_cols=43  Identities=14%  Similarity=0.026  Sum_probs=36.0

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+.||+.++|+.|+++|++++++||+.+  ..+...|+.+|+..+
T Consensus        75 ~l~pg~~~~l~~L~~~g~~~~ivS~~~~--~~i~~~l~~l~~~~~  117 (226)
T d2feaa1          75 KIREGFREFVAFINEHEIPFYVISGGMD--FFVYPLLEGIVEKDR  117 (226)
T ss_dssp             CBCTTHHHHHHHHHHHTCCEEEEEEEEH--HHHHHHHTTTSCGGG
T ss_pred             chhHHHHHHHHHHHhcccccccCCcchh--hhHHHHHHHcCCccc
Confidence            4689999999999999999999998754  456678888987654

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=2.8e-07  Score=64.85  Aligned_cols=44  Identities=30%  Similarity=0.379  Sum_probs=37.5

Q ss_pred             CCcEEEEeccCcccCCC------------c-cCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDGK------------K-PYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~------------~-~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      ..+.++||.||||....            . ++|++.++|+.|.++|+.++|+||.+
T Consensus        20 ~~Kia~fDrDGtLik~~~~~~~~~~~~d~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~   76 (195)
T d1yj5a1          20 QGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQM   76 (195)
T ss_dssp             CSCEEEECSBTTTEECSSSCSSCSSTTCCEESCTTHHHHHHHHHHHTCEEEEEEECH
T ss_pred             cCcEEEEECCCceEeeCCCCcCCCChhhceeccCCHHHHHHHHHhCCcEEEEecCcc
Confidence            57899999999996531            1 36999999999999999999999973

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=1e-06  Score=62.56  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             CcEEEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +|.++||+||||++... +-|.+.++|++|++. ..++++|++  +...+...++.++..
T Consensus         2 ~Kli~~DlDGTL~~~~~~i~~~~~~al~~l~~~-~~~~i~TGR--~~~~~~~~~~~~~~~   58 (267)
T d1nf2a_           2 YRVFVFDLDGTLLNDNLEISEKDRRNIEKLSRK-CYVVFASGR--MLVSTLNVEKKYFKR   58 (267)
T ss_dssp             BCEEEEECCCCCSCTTSCCCHHHHHHHHHHTTT-SEEEEECSS--CHHHHHHHHHHHSSS
T ss_pred             eEEEEEeCCccccCCcCccCHHHHHHHHHHHcC-CEEEEECCC--ChHHHHHHHHHhccc
Confidence            78999999999987554 568899999999765 578999875  444566666665543

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.16  E-value=4.9e-07  Score=63.20  Aligned_cols=66  Identities=9%  Similarity=-0.034  Sum_probs=46.8

Q ss_pred             cCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeeh
Q 033480           28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS   98 (118)
Q Consensus        28 ~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits   98 (118)
                      |+...+++|+||||+++...++ ..+.+.+++++|+.++++|+++  ...+...++.+++...  +.++++
T Consensus         1 m~~~li~~DlDGTL~~~~~~~~-~~~~~~~~~~~g~~v~i~TGR~--~~~~~~~~~~~~~~~~--~~~i~~   66 (244)
T d1s2oa1           1 MRQLLLISDLDNTWVGDQQALE-HLQEYLGDRRGNFYLAYATGRS--YHSARELQKQVGLMEP--DYWLTA   66 (244)
T ss_dssp             CCSEEEEECTBTTTBSCHHHHH-HHHHHHHTTGGGEEEEEECSSC--HHHHHHHHHHHTCCCC--SEEEET
T ss_pred             CCceEEEEECcccCCCCCCCHH-HHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHcCCCCC--ceEEec
Confidence            5667888999999998765443 3445556778899999999764  4556677788887643  445544

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=2.6e-06  Score=58.22  Aligned_cols=49  Identities=31%  Similarity=0.295  Sum_probs=36.3

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE  100 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~  100 (118)
                      .++||+.++|++|+   .+.+++||+.+  ..+...++.+|+..+ |+.++++.+
T Consensus        85 ~~~~g~~~~L~~l~---~~~~i~t~~~~--~~~~~~l~~~~l~~~-f~~~~~~~~  133 (222)
T d2fdra1          85 KIIDGVKFALSRLT---TPRCICSNSSS--HRLDMMLTKVGLKPY-FAPHIYSAK  133 (222)
T ss_dssp             CBCTTHHHHHHHCC---SCEEEEESSCH--HHHHHHHHHTTCGGG-TTTCEEEHH
T ss_pred             chhhhHHHHhhhcc---ccceeeeecch--hhhhhhhcccccccc-cceeecccc
Confidence            45677777777664   56789998754  446788999999998 687766654

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=98.13  E-value=3.3e-06  Score=58.21  Aligned_cols=51  Identities=27%  Similarity=0.390  Sum_probs=40.4

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++|++.+.|++|+  +++++++||++.  ..+...++..++..+ ||.+++++++
T Consensus        93 ~~~~~~~~~L~~l~--~~~~~v~s~~~~--~~~~~~~~~~~~~~~-fd~v~~s~~~  143 (245)
T d1qq5a_          93 TPYPDAAQCLAELA--PLKRAILSNGAP--DMLQALVANAGLTDS-FDAVISVDAK  143 (245)
T ss_dssp             CBCTTHHHHHHHHT--TSEEEEEESSCH--HHHHHHHHHTTCGGG-CSEEEEGGGG
T ss_pred             ccchhhhHHHHHHh--hhceeEEeccch--HHHHHHHhhcccccc-cccccccccc
Confidence            45688888888774  688999999864  345678889999998 7999999775

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2.4e-06  Score=60.66  Aligned_cols=60  Identities=15%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             CcEEEEeccCcccCCC-----------------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCC-
Q 033480           30 FKAWLLDQFGVLHDGK-----------------------------------KPYPGAISTLEMLATTGAKMVVISNSSR-   73 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~~-----------------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r-   73 (118)
                      .-+++||+|.|++.+.                                   .++||+.++++.++++|++++++||++. 
T Consensus        35 P~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVTnR~~~  114 (209)
T d2b82a1          35 PMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPT  114 (209)
T ss_dssp             CCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCCC
T ss_pred             CceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeEEEEeCCchh
Confidence            3489999999997641                                   2578999999999999999999999863 


Q ss_pred             ChHHHHHHH-HhCCCCC
Q 033480           74 RASTTIDKL-KSLGFDP   89 (118)
Q Consensus        74 ~~~~~~~~L-~~~gi~~   89 (118)
                      ..+...+.| +.+|++.
T Consensus       115 ~~e~T~~nL~K~lG~p~  131 (209)
T d2b82a1         115 KTETVSKTLADNFHIPA  131 (209)
T ss_dssp             SSCCHHHHHHHHTTCCT
T ss_pred             hHHHHHHHHHHHcCCCc
Confidence            334455666 4589863

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-06  Score=58.98  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=30.8

Q ss_pred             EEEeccCcccCCCc-cCccHHHHHHHHHHCCCcEEEEeCC
Q 033480           33 WLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNS   71 (118)
Q Consensus        33 ~~~D~DGtL~~~~~-~~pga~e~L~~Lk~~Gi~v~I~TN~   71 (118)
                      ++||+||||+++.. +-|.+.++|++|+++|+ ++++|++
T Consensus         4 ~lFDlDGTLl~~~~~is~~~~~~i~~l~~~g~-~~i~tgr   42 (244)
T d2fuea1           4 CLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQ-IGVVGGS   42 (244)
T ss_dssp             EEEESBTTTBSTTSCCCHHHHHHHHHHTTTSE-EEEECSS
T ss_pred             EEEccccCccCCCCcCCHHHHHHHHHHHhCCC-EEEEecC
Confidence            34699999998764 66999999999999996 5677754

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.02  E-value=1.9e-06  Score=58.56  Aligned_cols=40  Identities=20%  Similarity=0.166  Sum_probs=32.4

Q ss_pred             EEEEeccCcccCC------CccCccHHHHHHHHHHCCCcEEEEeCCC
Q 033480           32 AWLLDQFGVLHDG------KKPYPGAISTLEMLATTGAKMVVISNSS   72 (118)
Q Consensus        32 ~~~~D~DGtL~~~------~~~~pga~e~L~~Lk~~Gi~v~I~TN~~   72 (118)
                      .+|||+||||+..      ..+.|.+.++|++|++. +.++|+|+++
T Consensus         2 Li~~DlDGTL~~~~~~~~~~~i~~~~~~~l~~l~~~-~~v~i~TGR~   47 (229)
T d1u02a_           2 LIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKER-FDTYIVTGRS   47 (229)
T ss_dssp             EEEEECBTTTBCCCSCGGGCCCCHHHHHHHHHHHHH-SEEEEECSSC
T ss_pred             EEEEEecCCCCCCCCChhhCCCCHHHHHHHHHHhhC-CCEEEEcCCC
Confidence            6899999999852      23668899999999874 6799999764

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.94  E-value=5.6e-06  Score=57.12  Aligned_cols=52  Identities=25%  Similarity=0.369  Sum_probs=44.2

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v  101 (118)
                      .++||+.++|+.|+ +|++++++||+++  ..+...++.+|+..+ ||.+++|.++
T Consensus       100 ~~~p~~~~~L~~l~-~~~~i~i~Sn~~~--~~~~~~l~~~gl~~~-fd~i~~s~~~  151 (230)
T d1x42a1         100 ELYPEVVEVLKSLK-GKYHVGMITDSDT--EYLMAHLDALGIKDL-FDSITTSEEA  151 (230)
T ss_dssp             CBCTTHHHHHHHHB-TTBEEEEEESSCH--HHHHHHHHHHTCGGG-CSEEEEHHHH
T ss_pred             cccccHHHHHHHhh-ccCceeeeecccc--ccchhhhcccccccc-cccccccccc
Confidence            46899999999996 5799999999753  446688899999998 7999999875

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.58  E-value=6.1e-05  Score=49.94  Aligned_cols=43  Identities=26%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+.+|+.+.++.++.+|..++++|++..  .......+..+....
T Consensus        75 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  117 (210)
T d1j97a_          75 TPTEGAEETIKELKNRGYVVAVVSGGFD--IAVNKIKEKLGLDYA  117 (210)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHTCSEE
T ss_pred             hhhhhHHHHHHHHHHcCCEEEeeccccc--ccccchhhccchhhh
Confidence            4578899999999999999999998643  233445555665544

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.48  E-value=0.00033  Score=45.82  Aligned_cols=82  Identities=20%  Similarity=0.242  Sum_probs=57.6

Q ss_pred             CCcEEEEeccCcccCCC--ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehHHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDGK--KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL  106 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~--~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~~v~~~~l  106 (118)
                      +...+.||-+|++..+.  .+-|++.+.|+.|++.|++++++|+-.  .......-+.+|++.. |..+- .. -..+++
T Consensus         2 ~~~~~~~d~~~~~~~g~~D~lr~~a~~~I~~L~~~Gi~v~ilTGD~--~~~a~~ia~~lgI~~v-~~~~~-p~-~k~~~v   76 (135)
T d2b8ea1           2 KVTAVIFDKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDN--WRSAEAISRELNLDLV-IAEVL-PH-QKSEEV   76 (135)
T ss_dssp             HCCEEEEECCCCCBCSCCCCBCTTHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHHTCSEE-ECSCC-HH-HHHHHH
T ss_pred             eEEEEEECCceEEEEecCCCCCccHHHHHHHHHHcCCEEEEEcCcc--hhhhhHHHhhhhhhhh-ccccc-hh-HHHHHH
Confidence            35689999999887765  467999999999999999999999643  3344555577998765 44433 22 234555


Q ss_pred             HhccCCCcc
Q 033480          107 LRLIIASSV  115 (118)
Q Consensus       107 ~~~~~~~~v  115 (118)
                      ++...+..|
T Consensus        77 ~~~q~~~~v   85 (135)
T d2b8ea1          77 KKLQAKEVV   85 (135)
T ss_dssp             HHHTTTSCE
T ss_pred             HHHHcCCEE
Confidence            555444443

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=97.45  E-value=6.4e-05  Score=51.35  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=55.9

Q ss_pred             CCcEEEEeccCcccCCCccCc-----------cHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceee
Q 033480           29 RFKAWLLDQFGVLHDGKKPYP-----------GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT   97 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~p-----------ga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iit   97 (118)
                      +++.++||+||||+++...+.           -=...|+.|++.|+.++++|...  ...+..+.+.+++... |.....
T Consensus         4 ~ik~~i~DvDGVlTDG~v~~~~dG~e~k~F~~~Dg~gi~~l~~~gi~~~iis~~~--~~~v~~~~~~l~~~~~-~~~~~~   80 (177)
T d1k1ea_           4 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRD--SPILRRRIADLGIKLF-FLGKLE   80 (177)
T ss_dssp             GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCC--CHHHHHHHHHHTCCEE-EESCSC
T ss_pred             cCeEEEEccCCcccCCeEEEeCCCCEEEEEECcchHHHHHHhhhcEEEEEecCCc--hhHHHHHHhhhccccc-cccccc
Confidence            789999999999998743221           11236889999999999999753  3456678888887654 445555


Q ss_pred             hHHHHHHHHHhcc
Q 033480           98 SGELTHQYLLRLI  110 (118)
Q Consensus        98 s~~v~~~~l~~~~  110 (118)
                      .......++++..
T Consensus        81 K~~~l~~~~~~~~   93 (177)
T d1k1ea_          81 KETACFDLMKQAG   93 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            5566666666554

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.29  E-value=0.00029  Score=52.79  Aligned_cols=61  Identities=18%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             CcccCCCc--cCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCc--eeehHHHH
Q 033480           39 GVLHDGKK--PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAG--AITSGELT  102 (118)
Q Consensus        39 GtL~~~~~--~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~--iits~~v~  102 (118)
                      |-+.....  |.||+.++|++|+++|++++++||.++  ..+...++.+|+..+ |+.  +++.+++.
T Consensus       206 g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~Tg~~~--~~a~~il~~lgl~~~-F~~~~i~~~~d~~  270 (380)
T d1qyia_         206 GYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPY--TETVVPFENLGLLPY-FEADFIATASDVL  270 (380)
T ss_dssp             CTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEECSSCH--HHHHHHHHHHTCGGG-SCGGGEECHHHHH
T ss_pred             ccccccccccchhhHHHHHHHHHHCCCeEEEECCCCH--HHHHHHHHHcCCccc-CCcceEEecchhh
Confidence            44444443  557999999999999999999999754  557789999999887 664  67777653

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=5.9e-05  Score=49.99  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=27.3

Q ss_pred             CCcEEEEeccCcccCCCccCccHHHHHHHH-HHCCCcEEEEeCCC
Q 033480           29 RFKAWLLDQFGVLHDGKKPYPGAISTLEML-ATTGAKMVVISNSS   72 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~~~~pga~e~L~~L-k~~Gi~v~I~TN~~   72 (118)
                      ++|.++||+||||+++      +   ++++ +..|+.++++|.++
T Consensus         1 dmkli~fDlDGTLl~e------~---~~~~a~~~Gi~~~~~tgR~   36 (206)
T d1rkua_           1 DMEIACLDLEGVLVPE------I---WIAFAEKTGIDALKATTRD   36 (206)
T ss_dssp             CCEEEEEESBTTTBCC------H---HHHHHHHHTCGGGGCCTTT
T ss_pred             CcEEEEEcCccchHHH------H---HHHHHHHcCCHHHHHHCCC
Confidence            3689999999999852      3   4444 67799999999875

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.82  E-value=0.0022  Score=43.05  Aligned_cols=57  Identities=16%  Similarity=0.331  Sum_probs=45.4

Q ss_pred             EEEEeccCcccCC--CccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           32 AWLLDQFGVLHDG--KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        32 ~~~~D~DGtL~~~--~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+.+|..|+++-.  +++-|++.++|+.|++.|+++.++|+-.  .......-+.+|+...
T Consensus         4 ~~~~d~~~~~~~~~~Dp~R~~~~~~I~~l~~~GI~v~miTGD~--~~tA~~ia~~~Gi~~~   62 (168)
T d1wpga2           4 VICSDKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDN--KGTAIAICRRIGIFGE   62 (168)
T ss_dssp             EEEECCTTTTBCCCECCBCTTHHHHHHHHHHTTCEEEEECSSC--HHHHHHHHHHTTSSCT
T ss_pred             EEEECCccEEEEEecCCCchhHHHHHHHHHHCcCEEEEECCCC--HHHHHHHHHHcCCCCC
Confidence            4678999999877  4678999999999999999999999753  3345566677888543

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00056  Score=46.43  Aligned_cols=59  Identities=12%  Similarity=-0.045  Sum_probs=43.6

Q ss_pred             CCcEEEEeccCcccCCC------------------------ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHh
Q 033480           29 RFKAWLLDQFGVLHDGK------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS   84 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~~------------------------~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~   84 (118)
                      +...+++|+|+||.+..                        ..=||+.+||+++.+. +.++|-|++++..  +...++.
T Consensus        14 ~k~~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-yei~I~Ta~~~~Y--A~~il~~   90 (181)
T d1ta0a_          14 DKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY--ADPVADL   90 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH--HHHHHHH
T ss_pred             CCeEEEEeCCCCEEccccCCCCCccceeeecccceeeeeEEecCCCHHHHHHHHHhc-eEEEEEcCCcHHH--HHHHHHH
Confidence            56789999999998521                        1259999999999766 8999999886543  3455566


Q ss_pred             CCCCCc
Q 033480           85 LGFDPS   90 (118)
Q Consensus        85 ~gi~~~   90 (118)
                      +.....
T Consensus        91 ldp~~~   96 (181)
T d1ta0a_          91 LDKWGA   96 (181)
T ss_dssp             HCSSCC
T ss_pred             hccCCc
Confidence            554433

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.00039  Score=44.96  Aligned_cols=53  Identities=23%  Similarity=0.229  Sum_probs=41.6

Q ss_pred             ccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhC-CCCCcCCCceeehHHH
Q 033480           46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL-GFDPSLFAGAITSGEL  101 (118)
Q Consensus        46 ~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~-gi~~~~fd~iits~~v  101 (118)
                      .+.+++.+++..++++|++++++||+++..  ....+..+ ++..+ |+.++++++.
T Consensus        84 ~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~--~~~~~~~~~~l~~~-fd~v~~s~~~  137 (197)
T d2b0ca1          84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH--TTFWPEEYPEIRDA-ADHIYLSQDL  137 (197)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCT--TSCCGGGCHHHHHH-CSEEEEHHHH
T ss_pred             ccCchhHHHHHHHHhcCCeEEEEeCccHHH--HHHHHHHcccchhh-ccceeecccc
Confidence            468899999999999999999999987543  22345554 77777 7999988764

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0026  Score=42.18  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CCcEEEEeccCcccCC----CccCccHHHHHHH
Q 033480           29 RFKAWLLDQFGVLHDG----KKPYPGAISTLEM   57 (118)
Q Consensus        29 ~~~~~~~D~DGtL~~~----~~~~pga~e~L~~   57 (118)
                      ++++++||+||||+..    ..++|.+.+.+.+
T Consensus         2 ~~~~~lfD~dGTl~d~~~v~d~lfp~~~~~~~~   34 (225)
T d2g80a1           2 NYSTYLLDIEGTVCPISFVKETLFPYFTNKVPQ   34 (225)
T ss_dssp             CCSEEEECCBTTTBCTHHHHHTHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCcccHhhhhhhhHHHHHHHHH
Confidence            7899999999999864    2345666665544

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.03  E-value=0.017  Score=35.29  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCcCCCceeehH
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG   99 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~~fd~iits~   99 (118)
                      .+.+.+++.+.+.+++|+.++-.-+..-+.-..++.+.++++|..+.++.=  +  ..+.+.++..|+... | .++.+.
T Consensus        32 ~l~~~~~~~~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~l~~~--~--~~v~~~l~~~gl~~~-~-~i~~~~  105 (115)
T d1th8b_          32 QVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAV--S--PAVKRLFDMSGLFKI-I-RVEADE  105 (115)
T ss_dssp             HHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESC--C--HHHHHHHHHHTGGGT-S-EEESSH
T ss_pred             HHHHHHhcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC--C--HHHHHHHHHcCCCce-e-EEeCCH
Confidence            445555544688999999998888877777788888899999998777742  2  347788999999876 5 567665


Q ss_pred             HHHHH
Q 033480          100 ELTHQ  104 (118)
Q Consensus       100 ~v~~~  104 (118)
                      +.+.+
T Consensus       106 ~~Al~  110 (115)
T d1th8b_         106 QFALQ  110 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.70  E-value=0.065  Score=32.46  Aligned_cols=66  Identities=8%  Similarity=0.060  Sum_probs=51.3

Q ss_pred             HHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        21 ~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      +.+.+++.+.+.+++|+.++=+-+..-+.-..++.+.++++|.+++++.=+    ..+.+.++..|+...
T Consensus        32 ~~~~i~~~~~~~vvlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~----~~v~~~l~~~gl~~~   97 (111)
T d1h4xa_          32 ISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPS----PTMRKVFQFSGLGPW   97 (111)
T ss_dssp             HHHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCC----HHHHHHHHHTTCGGG
T ss_pred             HHHHHhcCCCcEEEEEEECCcccCchHHHHHHHHHHHHHHCCCEEEEecCC----HHHHHHHHHcCCCeE
Confidence            344444346899999999988888888888888999999999998877422    347788999998765

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.083  Score=38.01  Aligned_cols=43  Identities=12%  Similarity=0.097  Sum_probs=35.8

Q ss_pred             CCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCC
Q 033480           44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD   88 (118)
Q Consensus        44 ~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~   88 (118)
                      +..+-||+.++++.|+++|++++|+|++-.  ..+...++.+|++
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~--~~ie~vl~~lg~~  175 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIG--DVLEEVIRQAGVY  175 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEH--HHHHHHHHHTTCC
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChH--HHHHHHHHHcCCC
Confidence            456789999999999999999999998633  4566788888876

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=92.57  E-value=0.029  Score=43.22  Aligned_cols=52  Identities=17%  Similarity=0.174  Sum_probs=37.2

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCCCh-HHHHHHHH------hCCCCCcCCCceeehHH
Q 033480           48 YPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLK------SLGFDPSLFAGAITSGE  100 (118)
Q Consensus        48 ~pga~e~L~~Lk~~Gi~v~I~TN~~r~~-~~~~~~L~------~~gi~~~~fd~iits~~  100 (118)
                      -|....+|++|++.|++++++|||.... ......+=      .-.+..+ ||.||+.+.
T Consensus       187 ~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~m~y~~~~~~~~g~dWr~l-FDvVIv~A~  245 (458)
T d2bdea1         187 EKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGL-FEFVITLAN  245 (458)
T ss_dssp             CHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHGGGSCTTCCGGGT-EEEEEESCC
T ss_pred             ChhHHHHHHHHHHcCCeEEEEecCcHHHHHHHhhhhcccCCCCCCChHHh-ceEEEeCCC
Confidence            5889999999999999999999986432 12222222      2356667 798888765

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=91.20  E-value=0.15  Score=30.54  Aligned_cols=67  Identities=19%  Similarity=0.119  Sum_probs=49.1

Q ss_pred             hHHHHHhhcCCcEEEEeccCcccCCCccCccHHHHHHHHHHCCCcEEEEeCCCCChHHHHHHHHhCCCCCc
Q 033480           20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS   90 (118)
Q Consensus        20 ~~~~~~~~~~~~~~~~D~DGtL~~~~~~~pga~e~L~~Lk~~Gi~v~I~TN~~r~~~~~~~~L~~~gi~~~   90 (118)
                      .+.+.+++.+.+.+++|+.++=.-+..-+.-..++.+.++++|..++++. -   ...+.+.++..|+...
T Consensus        34 ~l~~~~~~~~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~l~~-~---~~~v~~~l~~~gl~~~  100 (110)
T d1vc1a_          34 QLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSS-L---KESISRILKLTHLDKI  100 (110)
T ss_dssp             HHHHHHHHCCCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEEEES-C---CHHHHHHHHHHTGGGT
T ss_pred             HHHHHHhcCCCCEEEEEEECCCccCHHHHHHHHHHHHHHHhCCCEEEEEe-C---CHHHHHHHHHcCCCce
Confidence            33444444578999999988777776666667778888899999887664 2   2457788999998765

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.19  E-value=0.022  Score=38.16  Aligned_cols=15  Identities=27%  Similarity=0.348  Sum_probs=13.3

Q ss_pred             CcEEEEeccCcccCC
Q 033480           30 FKAWLLDQFGVLHDG   44 (118)
Q Consensus        30 ~~~~~~D~DGtL~~~   44 (118)
                      +|.++||+||||++.
T Consensus         2 iK~I~FD~dGTL~d~   16 (230)
T d1x42a1           2 IRAVFFDFVGTLLSV   16 (230)
T ss_dssp             CCEEEECSBTTTBCH
T ss_pred             CeEEEEeCCCCcEec
Confidence            689999999999863

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.72  E-value=0.46  Score=30.94  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=26.6

Q ss_pred             ccCCCccCccHHHHHHHHHHCCC-cEEEEeCCC
Q 033480           41 LHDGKKPYPGAISTLEMLATTGA-KMVVISNSS   72 (118)
Q Consensus        41 L~~~~~~~pga~e~L~~Lk~~Gi-~v~I~TN~~   72 (118)
                      ++...+++||+.|++++|++.|. .+.++|+.+
T Consensus        69 ff~~L~p~~gA~e~l~~L~~~~~~~v~i~t~~~  101 (195)
T d1q92a_          69 FFFELEPLPGAVEAVKEMASLQNTDVFICTSPI  101 (195)
T ss_dssp             TTTTCCBCTTHHHHHHHHHHSTTEEEEEEECCC
T ss_pred             HHhhCCcccCHHHHHHHHhhccCccceEEcccc
Confidence            45677899999999999998665 688888875

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=85.61  E-value=0.12  Score=32.40  Aligned_cols=13  Identities=23%  Similarity=0.268  Sum_probs=10.6

Q ss_pred             EEEEeccCcccCC
Q 033480           32 AWLLDQFGVLHDG   44 (118)
Q Consensus        32 ~~~~D~DGtL~~~   44 (118)
                      .++||+||||++.
T Consensus         2 l~iFDlDgtL~d~   14 (197)
T d2b0ca1           2 LYIFDLGNVIVDI   14 (197)
T ss_dssp             EEEECCBTTTEEE
T ss_pred             EEEEeCCCCcCcC
Confidence            3679999999863