Citrus Sinensis ID: 033502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHccccccccccccEEEccccccccEEccccEEEccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHcHcHcccccHHHHHcHccc
Coil and Loop (DISEMBL)
macycnrslisskldpcspfsssslrlafhrnssvllgggiklhdsstiskkaqlsplsfsASFRNHICRaaeykfpdpipefadseTQKFRTHLLNKLAkkdmfgdslEDVVGICTE
Flexible Loop (DISEMBL)
macycnrslisskldpcspFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKlakkdmfgdsleDVVGICTE
Low Complexity Region (SEG)
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE
Disordered region (IsUnstruct)
***YC********************RLAFHRNSSVLLGGGIKLH*************LSFSASFRNHICRAAEYKFPDPIPEFA*****KFRTHLLNKLAKKDMFGDSLEDVVGIC**
Disordered Region (DISOPRED)
*******SLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIK*************************ICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE
Disordered Region (DISEMBL)
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE
Disordered Region (DISPRO)
**CYC**SLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MACYCNRSLISSKLDPCSPFSSSSLRLAFHRNSSVLLGGGIKLHDSSTISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
225424758	192	PREDICTED: uncharacterized protein LOC10	0.644	0.395	0.701	2e-23
449434881	169	PREDICTED: uncharacterized protein LOC10	0.491	0.343	0.741	3e-19
351734434	173	uncharacterized protein LOC100306067 pre	0.593	0.404	0.633	5e-19
388507390	182	unknown [Lotus japonicus]	0.593	0.384	0.591	1e-18
255588186	188	conserved hypothetical protein [Ricinus	0.449	0.281	0.811	1e-18
18391169	179	uncharacterized protein [Arabidopsis tha	0.491	0.324	0.672	6e-18
297843868	180	hypothetical protein ARALYDRAFT_471166 [	0.491	0.322	0.655	1e-16
357516739	172	hypothetical protein MTR_8g063150 [Medic	0.576	0.395	0.633	3e-12
242049158	173	hypothetical protein SORBIDRAFT_02g02381	0.432	0.294	0.542	1e-09
226501364	173	hypothetical protein [Zea mays] gi|19565	0.432	0.294	0.525	1e-09

>gi|225424758|ref|XP_002268027.1| PREDICTED: uncharacterized protein LOC100260319 [Vitis vinifera] gi|296086507|emb|CBI32096.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 1/77 (1%)

Query: 43  LHDSSTISKKAQLSPLSFSAS-FRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAK 101
           LH S T   + QL  L FS+S F NHICRAAEYKFPDPIPEFA  ET+KFRTHLLNK +K
Sbjct: 53  LHSSLTTKLQPQLHSLVFSSSSFANHICRAAEYKFPDPIPEFAQVETEKFRTHLLNKFSK 112

Query: 102 KDMFGDSLEDVVGICTE 118
           KD++G+S+E+VVGICTE
Sbjct: 113 KDIYGESVEEVVGICTE 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434881|ref|XP_004135224.1| PREDICTED: uncharacterized protein LOC101210245 [Cucumis sativus] gi|449527396|ref|XP_004170697.1| PREDICTED: uncharacterized LOC101210245 [Cucumis sativus]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 51/58 (87%)

Query: 61  SASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118
           S+SF  HIC AAEYKFPDPIPEFA +ET+KFR HLL KL+K+D++GDSL+ VVGICTE
Sbjct: 48  SSSFPTHICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKRDIYGDSLQQVVGICTE 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734434|ref|NP_001237024.1| uncharacterized protein LOC100306067 precursor [Glycine max] gi|255627431|gb|ACU14060.1| unknown [Glycine max]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 60/71 (84%), Gaps = 1/71 (1%)

Query: 48  TISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGD 107
           ++  + + S L FS++ R  + RAAEYKFPDPIPEFAD+ETQKF++HLL KL+KKDM+G+
Sbjct: 38  SVKGRRKFSTLPFSSTKR-LVTRAAEYKFPDPIPEFADAETQKFKSHLLKKLSKKDMYGE 96

Query: 108 SLEDVVGICTE 118
           S+E+VVGICTE
Sbjct: 97  SIEEVVGICTE 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507390|gb|AFK41761.1| unknown [Lotus japonicus]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 48  TISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGD 107
           +++ + +L+ L FS++ R  + RAAEYKFPDPIPEFAD+ET+KF++HLLNKL+K+D++GD
Sbjct: 48  SVNGRRKLATLPFSSTKR-FVIRAAEYKFPDPIPEFADAETEKFKSHLLNKLSKRDIYGD 106

Query: 108 SLEDVVGICTE 118
           S+ +VVG+CTE
Sbjct: 107 SVGEVVGVCTE 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588186|ref|XP_002534527.1| conserved hypothetical protein [Ricinus communis] gi|223525108|gb|EEF27857.1| conserved hypothetical protein [Ricinus communis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 48/53 (90%)

Query: 66  NHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118
           NHICRAAEYKFPDPIPEFAD ET+KFRTHL  KL+KK + GDS+E+VVGICTE
Sbjct: 72  NHICRAAEYKFPDPIPEFADVETEKFRTHLQKKLSKKGVCGDSIEEVVGICTE 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391169|ref|NP_563872.1| uncharacterized protein [Arabidopsis thaliana] gi|145323826|ref|NP_001077502.1| uncharacterized protein [Arabidopsis thaliana] gi|5091545|gb|AAD39574.1|AC007067_14 T10O24.14 [Arabidopsis thaliana] gi|21554792|gb|AAM63692.1| unknown [Arabidopsis thaliana] gi|149944329|gb|ABR46207.1| At1g10522 [Arabidopsis thaliana] gi|332190468|gb|AEE28589.1| uncharacterized protein [Arabidopsis thaliana] gi|332190469|gb|AEE28590.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 52/58 (89%)

Query: 61  SASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118
           S S R  +CRAAEYKFPDPIPEFA++ET+KFR H+LNKL+K+D+F DS++++VG+CTE
Sbjct: 60  SLSRRGFVCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTE 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843868|ref|XP_002889815.1| hypothetical protein ARALYDRAFT_471166 [Arabidopsis lyrata subsp. lyrata] gi|297335657|gb|EFH66074.1| hypothetical protein ARALYDRAFT_471166 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 50/58 (86%)

Query: 61  SASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118
           S S R  +CRAAEYKFPDPIPEFA++ET+KFR H+  KL+K+D+F DS++++VGICTE
Sbjct: 62  SLSRRGFVCRAAEYKFPDPIPEFAEAETEKFRDHMSKKLSKRDLFEDSVDEIVGICTE 119

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516739|ref|XP_003628658.1| hypothetical protein MTR_8g063150 [Medicago truncatula] gi|355522680|gb|AET03134.1| hypothetical protein MTR_8g063150 [Medicago truncatula] gi|388491344|gb|AFK33738.1| unknown [Medicago truncatula]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 57/71 (80%), Gaps = 3/71 (4%)

Query: 48  TISKKAQLSPLSFSASFRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGD 107
           +I++K    P S   S +  I RAAEYKFPDPIPEFADSET+KF+ HLLNKL+KKD+F +
Sbjct: 40  SINRKVSTLPFS---SIKRSITRAAEYKFPDPIPEFADSETEKFQNHLLNKLSKKDVFEE 96

Query: 108 SLEDVVGICTE 118
           S+E+VVG+CTE
Sbjct: 97  SVEEVVGVCTE 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242049158|ref|XP_002462323.1| hypothetical protein SORBIDRAFT_02g023810 [Sorghum bicolor] gi|241925700|gb|EER98844.1| hypothetical protein SORBIDRAFT_02g023810 [Sorghum bicolor]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 8/59 (13%)

Query: 68  ICRAA------EYKFPDPIPEFADSETQKFRTHLLNKLAKK--DMFGDSLEDVVGICTE 118
           +CR A      +YKFPDPIPEFA+ ET KFR H+  +L +K  D FGD +E++V ICTE
Sbjct: 53  VCRRAKNAGYEDYKFPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDICTE 111

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501364|ref|NP_001145504.1| hypothetical protein [Zea mays] gi|195657185|gb|ACG48060.1| hypothetical protein [Zea mays] gi|414589435|tpg|DAA40006.1| TPA: hypothetical protein ZEAMMB73_406956 [Zea mays]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 8/59 (13%)

Query: 68  ICRAA------EYKFPDPIPEFADSETQKFRTHLLNKLAKK--DMFGDSLEDVVGICTE 118
           +CR A      +YKFPDPIPEFA+ ET KFR H+  +L +K  D FGD +E++V +CTE
Sbjct: 53  VCRRAKNAGYEDYKFPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDVCTE 111

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:505006116	179	PRIN2 "AT1G10522" [Arabidopsis	0.940	0.620	0.460	1.5e-19

TAIR|locus:505006116 PRIN2 "AT1G10522" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/115 (46%), Positives = 75/115 (65%)

Query:     6 NRSLISSKLDPCSPFSSSSLRLAFHRNSS-VLLGGGIKLHDSSTISKKAQLSPLSFSA-S 63
             + +L SS+L   +  SS S R A    SS   +   IK         + ++   S S+ S
Sbjct:     5 HEALFSSRLLQVN--SSFSFRCALPIISSPAAVSCAIKSTQFFKQRCRTKVRDFSLSSLS 62

Query:    64 FRNHICRAAEYKFPDPIPEFADSETQKFRTHLLNKLAKKDMFGDSLEDVVGICTE 118
              R  +CRAAEYKFPDPIPEFA++ET+KFR H+LNKL+K+D+F DS++++VG+CTE
Sbjct:    63 RRGFVCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTE 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      118       118   0.00091  102 3  11 22  0.47    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  116 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.78u 0.14s 13.92t   Elapsed:  00:00:00
  Total cpu time:  13.78u 0.14s 13.92t   Elapsed:  00:00:00
  Start:  Thu May  9 16:05:06 2013   End:  Thu May  9 16:05:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009642 "response to light intensity" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0042646 "plastid nucleoid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028892001 SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (192 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00