Citrus Sinensis ID: 033520

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MAVSSGVFTTTFLSPETASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGKWECWIWIR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccEEEcccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEc
Coil and Loop (DISEMBL)
mavssgvftttflspetassflkpsssgkpgqfspvhlrTVRTVTlataspkpvtgkreprgimkprrvspemeafvgapeiprtQALKLIWAHIKQHNLQWKTIVFGKWECWIWIR
Flexible Loop (DISEMBL)
mavssgvftttflspetassflkpsssgkpgqfspvhLRTVRTvtlataspkpvtgkreprgimkprrvspemeafvgapEIPRTQALKLIWAHIKqhnlqwktivFGKWECWIWIR
Low Complexity Region (SEG)
MAVSSGVFTTTFLSPETASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGKWECWIWIR
Disordered region (IsUnstruct)
***************************************************************************FVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGKWECWIWI*
Disordered Region (DISOPRED)
*******************************************************************RVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGKWECWIWIR
Disordered Region (DISEMBL)
********TTTFLSPETA**************FSPVHLRTVRTVTLATAS*********PRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGKWECWIWIR
Disordered Region (DISPRO)
****SGVFTTTFLSPETASSFLKPSSSGKPGQFSPVHLRTVRTVTLATAS************IMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGKWECWIWIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVSSGVFTTTFLSPETASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTIVFGKWECWIWIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q05024	226	Protein TRI1 OS=Saccharom	yes	no	0.247	0.128	0.517	0.0002

>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 25/29 (86%)

Query: 73  MEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           ++ F+G+ E+PRTQ +K+IW +IK+H+LQ
Sbjct: 130 LQKFLGSEELPRTQVVKMIWQYIKEHDLQ 158

May be involved in transcription regulation.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
224103703	141	predicted protein [Populus trichocarpa]	0.820	0.680	0.616	6e-22
297802548	144	hypothetical protein ARALYDRAFT_491238 [	0.863	0.701	0.594	8e-21
15235320	144	SWIB/MDM2 domain-containing protein [Ara	0.829	0.673	0.581	4e-20
255555227	141	brg-1 associated factor, putative [Ricin	0.846	0.702	0.557	5e-20
14423526	144	putative protein [Arabidopsis thaliana]	0.829	0.673	0.581	5e-20
225429337	145	PREDICTED: upstream activation factor su	0.846	0.682	0.620	6e-20
147843362	145	hypothetical protein VITISV_011142 [Viti	0.846	0.682	0.620	6e-20
21553903	144	unknown [Arabidopsis thaliana]	0.829	0.673	0.563	8e-19
297836126	141	SWIB complex BAF60b domain-containing pr	0.854	0.709	0.576	3e-18
18397658	141	SWIB/MDM2 domain-containing protein [Ara	0.846	0.702	0.580	5e-18

>gi|224103703|ref|XP_002313162.1| predicted protein [Populus trichocarpa] gi|222849570|gb|EEE87117.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 76/107 (71%), Gaps = 11/107 (10%)

Query: 1   MAVSSGVFTTTFLSPETASSFLKPS-SSGKPGQF---SPVHLRTVRT--VTLATASPKPV 54
           MA+SSG+F+T FLS ET      PS +S  P +F    P + R VR+  VT ATAS    
Sbjct: 1   MAISSGIFST-FLSTETVPLLKFPSPTSTLPLRFLAAPPANPRMVRSTVVTCATAS---- 55

Query: 55  TGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           TG R PRGIMKPRRVSPEM  F+GAPE+ RTQALKLIWAHIK+HNLQ
Sbjct: 56  TGNRAPRGIMKPRRVSPEMADFIGAPEVSRTQALKLIWAHIKEHNLQ 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802548|ref|XP_002869158.1| hypothetical protein ARALYDRAFT_491238 [Arabidopsis lyrata subsp. lyrata] gi|297314994|gb|EFH45417.1| hypothetical protein ARALYDRAFT_491238 [Arabidopsis lyrata subsp. lyrata]

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 74/106 (69%), Gaps = 5/106 (4%)

Query: 1   MAVSSGVFTTTFLSPETA--SSFLKPSSSGKPGQFSPVHLRTVRTVTLATAS---PKPVT 55
           MA+SSG+F+TTFL  +TA   S L   SS +     P +LR VR VT ATA+   P   T
Sbjct: 1   MALSSGIFSTTFLCVDTAPFRSSLLSPSSLRLSPHRPANLRMVRAVTSATAASSDPTTTT 60

Query: 56  GKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             REPRGIMKPR VSPEM+  VG PEIPRTQALK IWA+IK+H+LQ
Sbjct: 61  KTREPRGIMKPRPVSPEMQDVVGVPEIPRTQALKRIWAYIKEHDLQ 106

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235320|ref|NP_195155.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gi|4455174|emb|CAB36706.1| putative protein [Arabidopsis thaliana] gi|7270379|emb|CAB80146.1| putative protein [Arabidopsis thaliana] gi|24899741|gb|AAN65085.1| putative protein [Arabidopsis thaliana] gi|332660955|gb|AEE86355.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 73/110 (66%), Gaps = 13/110 (11%)

Query: 1   MAVSSGVFTTTFLSPETA---SSFLKPSSSGKPGQFSPVH---LRTVRTVTLATA---SP 51
           MA+SSG+F+TTFL  +TA   SS L PSS     + SP H   LR VR VT A A    P
Sbjct: 1   MALSSGIFSTTFLCVDTAPLRSSMLSPSSL----RLSPNHPTNLRMVRAVTSAAAASSDP 56

Query: 52  KPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
              T  REPRGIMKPR VS  M+  VG PEIPRTQALK IWA+IK+H+LQ
Sbjct: 57  TTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQ 106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555227|ref|XP_002518650.1| brg-1 associated factor, putative [Ricinus communis] gi|223542031|gb|EEF43575.1| brg-1 associated factor, putative [Ricinus communis]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 69/104 (66%), Gaps = 5/104 (4%)

Query: 1   MAVSSGVFTTTFLSPETASSFLKPSSSGKPGQFSP---VHLRTVRTVTLATASPKPVTGK 57
           MA++SG+ ++  LSP+T S FLKP  S      +P    +LR VRTVT           +
Sbjct: 1   MAITSGILSSV-LSPQTVS-FLKPYPSSSMLLVAPPSSANLRMVRTVTCCATVSSQQQEQ 58

Query: 58  REPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           R PRGIMKPRRVSPEM   VGA EIPRTQALK IWAHIK++NLQ
Sbjct: 59  RRPRGIMKPRRVSPEMAELVGASEIPRTQALKRIWAHIKENNLQ 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14423526|gb|AAK62445.1|AF387000_1 putative protein [Arabidopsis thaliana]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 73/110 (66%), Gaps = 13/110 (11%)

Query: 1   MAVSSGVFTTTFLSPETA---SSFLKPSSSGKPGQFSPVH---LRTVRTVTLATA---SP 51
           MA+SSG+F+TTFL  +TA   SS L PSS     + SP H   LR VR VT A A    P
Sbjct: 1   MALSSGIFSTTFLCVDTAPLRSSMLTPSSL----RLSPNHPTNLRMVRAVTSAAAASSDP 56

Query: 52  KPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
              T  REPRGIMKPR VS  M+  VG PEIPRTQALK IWA+IK+H+LQ
Sbjct: 57  TTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQ 106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429337|ref|XP_002272147.1| PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera]

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 76/108 (70%), Gaps = 9/108 (8%)

Query: 1   MAVSSGVFTTTFLSPETASSFLKPSSSGKPGQFSP-----VHLRTVRTVTLATASPKPV- 54
           MA+S GV +T F S ETAS F K + S    +  P      +LR VRTVT A AS  P  
Sbjct: 1   MAMSLGVIST-FFSGETAS-FSKSALSLTSLRHLPPPSPHTNLRLVRTVTSAAASKPPAA 58

Query: 55  -TGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
            TGKREPRGIMKPRR+SPEM+ F+G PEIPRTQALK IWA+IKQHNLQ
Sbjct: 59  ATGKREPRGIMKPRRISPEMQDFLGVPEIPRTQALKQIWAYIKQHNLQ 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843362|emb|CAN78429.1| hypothetical protein VITISV_011142 [Vitis vinifera]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/108 (62%), Positives = 76/108 (70%), Gaps = 9/108 (8%)

Query: 1   MAVSSGVFTTTFLSPETASSFLKPSSSGKPGQFSP-----VHLRTVRTVTLATASPKPV- 54
           MA+S GV  +TF S ETAS F K + S    +  P      +LR VRTVT A AS  P  
Sbjct: 1   MAMSLGV-XSTFFSGETAS-FSKSALSLTSLRHLPPPSPHTNLRLVRTVTSAAASKPPAA 58

Query: 55  -TGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
            TGKREPRGIMKPRR+SPEM+ F+G PEIPRTQALK IWA+IKQHNLQ
Sbjct: 59  ATGKREPRGIMKPRRISPEMQDFLGVPEIPRTQALKQIWAYIKQHNLQ 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553903|gb|AAM62986.1| unknown [Arabidopsis thaliana]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 71/110 (64%), Gaps = 13/110 (11%)

Query: 1   MAVSSGVFTTTFLSPETAS---SFLKPSSSGKPGQFSPVH---LRTVRTVTLATA---SP 51
           MA+SSG+F+ TFL  +TA    S L PSS     + SP H   LR VR VT A A    P
Sbjct: 1   MALSSGIFSITFLCVDTAPLRISMLSPSSL----RLSPNHPTNLRMVRAVTSAAAASSDP 56

Query: 52  KPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
              T  REPRGIMKPR VS  M+  VG PEIPRTQALK IWA+IK+H+LQ
Sbjct: 57  TTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQ 106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836126|ref|XP_002885945.1| SWIB complex BAF60b domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331785|gb|EFH62204.1| SWIB complex BAF60b domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 69/104 (66%), Gaps = 4/104 (3%)

Query: 1   MAVSSGVFTTTFLSPETASSFLK--PSSSGKPGQFSPVHLRTVRTVTLATASPKP-VTGK 57
           MAVSSG F+T FL  +T S   +  P SS +        LR VR VT ATAS +P  T K
Sbjct: 1   MAVSSGTFST-FLCVKTTSFHNQSTPPSSLRLASHPAAKLRLVRAVTSATASSEPTATNK 59

Query: 58  REPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           R PRGIMKPR VSPEM+  V  PEI RTQALK IWA+IK+H+LQ
Sbjct: 60  RVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQ 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397658|ref|NP_565366.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gi|13926219|gb|AAK49586.1|AF370580_1 Unknown protein [Arabidopsis thaliana] gi|3650030|gb|AAC61285.1| expressed protein [Arabidopsis thaliana] gi|330251251|gb|AEC06345.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 70/105 (66%), Gaps = 6/105 (5%)

Query: 1   MAVSSGVFTTTFLSPETASSFLKPS---SSGKPGQFSPVHLRTVRTVTLATASPKP-VTG 56
           MAVSSG F+T FL  +T +SF  PS   SS +        LR VR VT AT S +P  T 
Sbjct: 1   MAVSSGTFST-FLCIKT-TSFRNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTATN 58

Query: 57  KREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           KR PRGIMKPR VSPEM+  V  PEI RTQALK IWA+IK+H+LQ
Sbjct: 59  KRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQ 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2116189	144	AT4G34290 "AT4G34290" [Arabido	0.846	0.687	0.583	6.1e-23
TAIR|locus:2060469	141	AT2G14880 "AT2G14880" [Arabido	0.846	0.702	0.580	1e-20
TAIR|locus:2028671	112	AT1G31760 "AT1G31760" [Arabido	0.512	0.535	0.416	1.8e-07
TAIR|locus:2096404	143	AT3G03590 "AT3G03590" [Arabido	0.717	0.587	0.373	1.8e-07
TAIR|locus:2132055	385	AT4G22360 "AT4G22360" [Arabido	0.504	0.153	0.426	2.1e-07
TAIR|locus:2010197	372	AT1G49520 "AT1G49520" [Arabido	0.427	0.134	0.388	1.1e-06
TAIR|locus:2085894	462	AT3G19080 [Arabidopsis thalian	0.427	0.108	0.4	9.3e-06
TAIR|locus:505006294	109	AT2G35605 "AT2G35605" [Arabido	0.461	0.495	0.436	2.4e-05
SGD|S000004846	226	TRI1 "Non-essential sumoylated	0.282	0.146	0.484	3.9e-05
POMBASE|SPCC285.17	233	spp27 "RNA polymerase I upstre	0.316	0.158	0.405	0.00033

TAIR|locus:2116189 AT4G34290 "AT4G34290" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 63/108 (58%), Positives = 73/108 (67%)

Query:     1 MAVSSGVFTTTFLSPETA---SSFLKPSSSG-KPGQFSPVHLRTVRTVTLATAS---PKP 53
             MA+SSG+F+TTFL  +TA   SS L PSS    P    P +LR VR VT A A+   P  
Sbjct:     1 MALSSGIFSTTFLCVDTAPLRSSMLSPSSLRLSPNH--PTNLRMVRAVTSAAAASSDPTT 58

Query:    54 VTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
              T  REPRGIMKPR VS  M+  VG PEIPRTQALK IWA+IK+H+LQ
Sbjct:    59 TTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQ 106

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060469 AT2G14880 "AT2G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 61/105 (58%), Positives = 72/105 (68%)

Query:     1 MAVSSGVFTTTFLSPETASSFLKPSSSGKPGQFS--PV-HLRTVRTVTLATASPKPV-TG 56
             MAVSSG F+T FL  +T +SF  PS+     +F+  P   LR VR VT AT S +P  T 
Sbjct:     1 MAVSSGTFST-FLCIKT-TSFRNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTATN 58

Query:    57 KREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             KR PRGIMKPR VSPEM+  V  PEI RTQALK IWA+IK+H+LQ
Sbjct:    59 KRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQ 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2028671 AT1G31760 "AT1G31760" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 25/60 (41%), Positives = 36/60 (60%)

Query:    42 RTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             RT+    A+ + VT   E +GI K R VS ++ +F G  E+ R  ALK +W ++K HNLQ
Sbjct:    12 RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096404 AT3G03590 "AT3G03590" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 34/91 (37%), Positives = 42/91 (46%)

Query:    18 ASSFLKPSSSGKPGQFSPVHLRTVRTVTLATASPKPVT-----GKREPR--GIMKPRRVS 70
             A S L P+S       S    +       A A PKP        K+ PR  GI K   VS
Sbjct:    12 ARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVS 71

Query:    71 PEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             P +  F+G  E  RT A+K IW +IK H+LQ
Sbjct:    72 PVLAQFLGTGETSRTDAIKGIWTYIKSHDLQ 102

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2132055 AT4G22360 "AT4G22360" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query:    43 TVTLATASPKPVTGKRE--PRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNL 100
             +V  A     P   KR+  P G+ K  RVSPE+E  VG P +PRT+ ++ +WA+I+++NL
Sbjct:   175 SVNQAPKESAPAGTKRKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNL 234

Query:   101 Q 101
             Q
Sbjct:   235 Q 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010197 AT1G49520 "AT1G49520" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 21/54 (38%), Positives = 36/54 (66%)

Query:    52 KPVTGKREPR----GIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             KP   + +P+    G  K   +SPE++AF G P++ RT+ +K++W +IK++NLQ
Sbjct:   236 KPAKSEEKPKKKGGGFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQ 289

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085894 AT3G19080 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 20/50 (40%), Positives = 35/50 (70%)

Query:    52 KPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             +PV  K+   GI K  ++SP++E  VGA ++ RT+ +K +WA+I++ +LQ
Sbjct:   105 RPVKAKKRGGGITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQ 154

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:505006294 AT2G35605 "AT2G35605" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 24/55 (43%), Positives = 33/55 (60%)

Query:    47 ATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             A +S    TG R+  GI+K   VS  +  F+G  E+ RT A+K IW +IK +NLQ
Sbjct:    15 AASSTGAKTG-RQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

SGD|S000004846 TRI1 "Non-essential sumoylated protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 101 (40.6 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 16/33 (48%), Positives = 27/33 (81%)

Query:    69 VSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             +S  ++ F+G+ E+PRTQ +K+IW +IK+H+LQ
Sbjct:   126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQ 158

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;IDA

POMBASE|SPCC285.17 spp27 "RNA polymerase I upstream activation factor complex subunit Spp27" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 93 (37.8 bits), Expect = 0.00033, P = 0.00033
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query:    65 KPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             KP ++SP++  F+G  ++ R Q +K +W +IK H+LQ
Sbjct:   119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQ 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      117       117   0.00091  102 3  11 22  0.47    30
                                                     29  0.46    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.93u 0.15s 16.08t   Elapsed:  00:00:01
  Total cpu time:  15.93u 0.15s 16.08t   Elapsed:  00:00:01
  Start:  Thu May  9 16:48:21 2013   End:  Thu May  9 16:48:22 2013

GO:0000500 "RNA polymerase I upstream activating factor complex" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045943 "positive regulation of transcription from RNA polymerase I promoter" evidence=TAS

GO:0001168 "RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX2461 hypothetical protein (141 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
smart00151	77	smart00151, SWIB, SWI complex, BAF60b domains	2e-13
pfam02201	76	pfam02201, SWIB, SWIB/MDM2 domain	1e-12
COG5531	237	COG5531, COG5531, SWIB-domain-containing proteins	3e-07
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	3e-06
PRK14724	987	PRK14724, PRK14724, DNA topoisomerase III; Provisi	2e-05

>gnl|CDD|128456 smart00151, SWIB, SWI complex, BAF60b domains

 Score = 60.0 bits (146), Expect = 2e-13
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 63  IMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           I K   +SPE+   +GAPE+ RT+ +K +W +IK+HNLQ
Sbjct: 1   ITKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQ 39

Length = 77

>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain

 Score = 58.0 bits (141), Expect = 1e-12
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 63  IMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           + KP  +SP++  F+GA E+ RT+ +K +W +IK+HNLQ
Sbjct: 1   LTKPFPLSPDLAKFLGAGELSRTEVVKKLWQYIKEHNLQ 39

This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2. Length = 76

>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 38  LRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQ 97
                T    T   K  +   +     +  ++SP++ A +G     R +A+K +W +IK+
Sbjct: 96  TENGDTEGKETDKKKKSSTISKNSPSGEKVKLSPKLAAILGLEPGTRPEAVKKLWKYIKK 155

Query: 98  HNLQ 101
           HNLQ
Sbjct: 156 HNLQ 159

Length = 237

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 43  TVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
             T+   S        + R        SP + A +GA  + R +A K +W +IK+H LQ
Sbjct: 765 AKTVKKKSKAKSKKTTKKRA-GPLYTPSPALAAMIGAEPVGRGEATKKVWDYIKEHGLQ 822

Length = 860

>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 29  KPGQFSPVHLRTVRTVTLATASPKPVTGKREPRGIMKPRRVSPEMEAFVGAPEIPRTQAL 88
           KP + +       +T    T           P   +KP   S  + A +GA  + R + +
Sbjct: 881 KPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGLKP---SAALAAVIGAEPVARPEVI 937

Query: 89  KLIWAHIKQHNLQ 101
           K +W +IK +NLQ
Sbjct: 938 KKLWDYIKANNLQ 950

Length = 987

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG1946	240	consensus RNA polymerase I transcription factor UA	99.77
PF02201	76	SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW	99.73
smart00151	77	SWIB SWI complex, BAF60b domains.	99.72
PRK14724	987	DNA topoisomerase III; Provisional	99.55
COG5531	237	SWIB-domain-containing proteins implicated in chro	99.55
KOG2570	420	consensus SWI/SNF transcription activation complex	99.09
PRK06319	860	DNA topoisomerase I/SWI domain fusion protein; Val	98.82

>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]

Probab=99.77  E-value=3.8e-19  Score=143.18  Aligned_cols=114  Identities=31%  Similarity=0.326  Sum_probs=76.1

Q ss_pred             CccccccccccccCccccccccCCCCCCCC--CCCCcch--hhHHHHHhhhcC---CCCCCCCCCCCCCCCCCCCCCHHH
Q 033520            1 MAVSSGVFTTTFLSPETASSFLKPSSSGKP--GQFSPVH--LRTVRTVTLATA---SPKPVTGKREPRGIMKPRRVSPEM   73 (117)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~--~~~~r~~~s~~~---~~~~~~~~k~~~g~~kp~~LSpeL   73 (117)
                      |+..+|+.+|++.+..+- .+..+...-+.  ..-.+.+  .+..|+......   .+...++++.++|+++++.||++|
T Consensus        32 ~~~~~~v~~~~~k~~~~~-~~~~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~ls~~L  110 (240)
T KOG1946|consen   32 MAPRSGVDGTAQKSLLAK-AIDESSDEDSALPVKGSKKKKRGSKTRSRKPKSLESSGEKNKKKKKASWGSTKLIPLSPSL  110 (240)
T ss_pred             hccccCCCCcchhhhhhh-hhhcccccccccccccccccccccccccccCcccccccccchhccccCcCcccccccCHHH
Confidence            566788888887766554 44442222111  1111222  233332222111   112222333557999999999999


Q ss_pred             HhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEEe
Q 033520           74 EAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWIW  115 (117)
Q Consensus        74 a~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~~  115 (117)
                      ++|+|.++++|.+|+++||+|||+||||||.|            |||+++|.|.
T Consensus       111 ~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~k~v~~f  164 (240)
T KOG1946|consen  111 ARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGKKRVGMF  164 (240)
T ss_pred             HhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhccCcccee
Confidence            99999999999999999999999999999996            9998887663

>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []

Probab=99.73  E-value=3.9e-19  Score=119.45  Aligned_cols=53  Identities=34%  Similarity=0.573  Sum_probs=47.6

Q ss_pred             CCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEEe
Q 033520           63 IMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWIW  115 (117)
Q Consensus        63 ~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~~  115 (117)
                      |.++|+||++|++++|..++||++|+++||+|||+||||||+|            |||+|+|.+.
T Consensus         1 ~~k~~~ls~~L~~~lg~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~   65 (76)
T PF02201_consen    1 FPKRFKLSPELAEFLGEDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFF   65 (76)
T ss_dssp             -EEEEHHHHHHHHHTT-SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEE
T ss_pred             CCCCccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHh
Confidence            5688999999999999999999999999999999999999994            9999988763

The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....

>smart00151 SWIB SWI complex, BAF60b domains

Probab=99.72  E-value=3.9e-18  Score=114.83  Aligned_cols=52  Identities=42%  Similarity=0.648  Sum_probs=48.2

Q ss_pred             CCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           63 IMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        63 ~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      ++++|.+|++|++|+|.++++|+||++.+|+|||+||||||+|            +||+++|.|
T Consensus         1 ~~~~~~ls~~L~~~lg~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~   64 (77)
T smart00151        1 ITKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDM   64 (77)
T ss_pred             CCCcccCCHHHHHHhCCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecH
Confidence            4789999999999999999999999999999999999999984            899887764

>PRK14724 DNA topoisomerase III; Provisional

Probab=99.55  E-value=2.7e-15  Score=138.39  Aligned_cols=54  Identities=30%  Similarity=0.422  Sum_probs=50.6

Q ss_pred             CCCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEEe
Q 033520           62 GIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWIW  115 (117)
Q Consensus        62 g~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~~  115 (117)
                      .+..+++|||+|++|||.++++|++||++||+|||+||||||+|            |||+|+|.|.
T Consensus       911 ~~~~~~~ls~~La~~lg~~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vfg~~~~~~~  976 (987)
T PRK14724        911 PPAAGLKPSAALAAVIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFGKDQVTMF  976 (987)
T ss_pred             ccccccCCCHHHHHHhCCCcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHhCCCcccHH
Confidence            47779999999999999999999999999999999999999995            9999999873

>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

Probab=99.55  E-value=2.8e-15  Score=120.98  Aligned_cols=55  Identities=29%  Similarity=0.365  Sum_probs=49.6

Q ss_pred             CCCCCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           60 PRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        60 ~~g~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      ++....+|.+|+.||.+||.++++|+|||++||+|||+||||||+|            |||.|.+.|
T Consensus       118 ~~~~~~~~~lS~~La~ilG~~~~tr~~~v~~lw~YIk~h~lq~~~nkr~I~~D~~L~~v~g~~p~~m  184 (237)
T COG5531         118 NSPSGEKVKLSPKLAAILGLEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLGSDPIDM  184 (237)
T ss_pred             ccCCCCceecCHHHHHHhCCCCCCccHHHHHHHHHHHHhcCCCccccceecccHHHHHHhCCCchhh
Confidence            3457899999999999999999999999999999999999999995            898666554

>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription]

Probab=99.09  E-value=5.7e-11  Score=102.44  Aligned_cols=50  Identities=22%  Similarity=0.356  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCcc------------cccCcceeEE
Q 033520           65 KPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKT------------IVFGKWECWI  114 (117)
Q Consensus        65 kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~------------NvFG~d~v~~  114 (117)
                      ..|++||.||.+||.++.+|++||..||.|||.|+||||+            .|||+|+..|
T Consensus       207 ~~fklsp~La~lLGi~t~Trp~iI~alWqYIk~n~Lqd~~e~~~incD~~l~qif~~~rl~F  268 (420)
T KOG2570|consen  207 EEFKLSPRLANLLGIHTGTRPDIVTALWQYIKTNKLQDPEDSDFINCDKALEQIFGVDRLKF  268 (420)
T ss_pred             cccccCHHHHHHhhhccCcchHHHHHHHHHHHHhccCCcccchhhcchHHHHHhhccccccc
Confidence            3488999999999999999999999999999999999998            3999998876

>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated

Probab=98.82  E-value=2.7e-09  Score=97.63  Aligned_cols=53  Identities=30%  Similarity=0.351  Sum_probs=48.3

Q ss_pred             CCCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           62 GIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        62 g~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      ..+.+|.+|++|+.++|..+++|.++++.+|+|||+|+||||+|            |||++++.|
T Consensus       783 ~~~~~~~~S~~La~~~g~~~~sr~~~~~~lw~yIk~~~lqdp~~Kr~i~~d~kl~kvf~~~~~~~  847 (860)
T PRK06319        783 RAGPLYTPSPALAAMIGAEPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVIGPDPIDM  847 (860)
T ss_pred             ccccccccccccccccCcCccCchHHHHHHHHHHHHhcccCccccccCCCchhhhhhhCcCccch
Confidence            35667889999999999999999999999999999999999984            899888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	3e-13
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	1e-12
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	8e-07

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 93

 Score = 59.8 bits (145), Expect = 3e-13
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 56  GKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           G     G+ +  ++S  +   +G     R + +  IW ++K   LQ
Sbjct: 1   GSSGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQ 46

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Length = 93

 Score = 58.3 bits (141), Expect = 1e-12
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 56  GKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQ 101
           G     G     ++ P +   +G     R   ++ +W +IK H LQ
Sbjct: 1   GSSGSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQ 46

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 101

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 6/38 (15%)

Query: 70  SPEMEAFVG------APEIPRTQALKLIWAHIKQHNLQ 101
           S ++  F+       +  I R      I  +I +  L 
Sbjct: 17  SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLL 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	99.79
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	99.76
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	99.71
1z1m_A	119	Ubiquitin-protein ligase E3 MDM2; peptide-binding	92.09

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.79  E-value=3.5e-20  Score=128.48  Aligned_cols=54  Identities=22%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             CCCCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           61 RGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        61 ~g~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      ....+.|++|++||+|+|.++++|++|+++||+|||+||||||+|            |||+|+|.|
T Consensus         6 ~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~   71 (93)
T 1v31_A            6 SGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKF   71 (93)
T ss_dssp             CSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEET
T ss_pred             CCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccH
Confidence            346689999999999999999999999999999999999999995            999999876

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1

Probab=99.76  E-value=9.1e-20  Score=126.57  Aligned_cols=51  Identities=20%  Similarity=0.336  Sum_probs=47.7

Q ss_pred             CCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           64 MKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        64 ~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      ...|++|++||+|+|.++++|++|+++||+|||+||||||+|            |||+|+|.|
T Consensus         9 p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~   71 (93)
T 1uhr_A            9 PPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKF   71 (93)
T ss_dssp             CCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEG
T ss_pred             CCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccH
Confidence            457899999999999999999999999999999999999984            999999876

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.71  E-value=4e-18  Score=120.72  Aligned_cols=47  Identities=21%  Similarity=0.210  Sum_probs=44.0

Q ss_pred             CCCHHHHhhh---CC---CCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           68 RVSPEMEAFV---GA---PEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        68 ~LSpeLa~~l---G~---~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      -+|++|++||   |.   ++++|++|+++||+|||+||||||+|            |||+|+|.|
T Consensus        15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~   79 (101)
T 1v32_A           15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFR   79 (101)
T ss_dssp             SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEET
T ss_pred             cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccH
Confidence            7899999999   87   57999999999999999999999994            999999876

>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}

Probab=92.09  E-value=0.11  Score=37.94  Aligned_cols=51  Identities=18%  Similarity=0.118  Sum_probs=38.7

Q ss_pred             CCCCCCCHHHHhhh---CC--CCcCHHHHHHHHHHHhhhcCCCCccc-------------ccCcceeEE
Q 033520           64 MKPRRVSPEMEAFV---GA--PEIPRTQALKLIWAHIKQHNLQWKTI-------------VFGKWECWI  114 (117)
Q Consensus        64 ~kp~~LSpeLa~~l---G~--~e~sR~evvK~lW~YIK~nnLQDP~N-------------vFG~d~v~~  114 (117)
                      ...++..++|-.+|   |.  +.-++-||+..+=+||-.+.|-|+.+             +||++++.+
T Consensus        25 e~~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsv   93 (119)
T 1z1m_A           25 ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSV   93 (119)
T ss_dssp             CCCCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEET
T ss_pred             cccccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceee
Confidence            33455555555555   53  56789999999999999999999983             888887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1v31a_	93	a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl	3e-14
d1uhra_	93	a.42.1.1 (A:) SWI/SNF related regulator of chromat	5e-14
d1v32a_	101	a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl	8e-07

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.9 bits (148), Expect = 3e-14
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 56  GKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWK 103
           G     G+ +  ++S  +   +G     R + +  IW ++K   LQ  
Sbjct: 1   GSSGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNP 48

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (147), Expect = 5e-14
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 56  GKREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWK 103
           G     G     ++ P +   +G     R   ++ +W +IK H LQ  
Sbjct: 1   GSSGSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP 48

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.1 bits (99), Expect = 8e-07
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 6/41 (14%)

Query: 70  SPEMEAFVG------APEIPRTQALKLIWAHIKQHNLQWKT 104
           S ++  F+       +  I R      I  +I +  L   +
Sbjct: 17  SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPS 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d1v31a_	93	Hypothetical protein AT5G14170 (rafl11-05-p19) {Th	99.85
d1uhra_	93	SWI/SNF related regulator of chromatin (BRG1-assoc	99.82
d1v32a_	101	Hypothetical protein AT5G08430 (rafl09-47-k03) {Th	99.58
d2axia1	85	MDM2 {Human (Homo sapiens) [TaxId: 9606]}	87.49
d1ttva_	107	MDM2 {African clawed frog (Xenopus laevis) [TaxId:	87.16
d1k4ma_	213	Nicotinamide mononucleotide (NMN) adenylyltransfer	86.0

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=2.1e-22  Score=138.34  Aligned_cols=58  Identities=21%  Similarity=0.310  Sum_probs=55.0

Q ss_pred             CCCCCCCCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           57 KREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        57 ~k~~~g~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      .++++||.++|+||++||+|+|.++++|++|+++||+|||+||||||+|            |||+|+|.|
T Consensus         2 ~~~~~G~~~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqd~~nkr~I~~D~~L~~lfg~~~v~~   71 (93)
T d1v31a_           2 SSGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKF   71 (93)
T ss_dssp             CSSCCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEET
T ss_pred             CCCCCCCcCCccCCHHHHHHHCcCcCcHHHHHHHHHHHHHHhCCCCCCCCCEEecCHHHHHHhCCCcccH
Confidence            4678999999999999999999999999999999999999999999985            999999876

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.4e-21  Score=134.62  Aligned_cols=58  Identities=19%  Similarity=0.319  Sum_probs=54.5

Q ss_pred             CCCCCCCCCCCCCCHHHHhhhCCCCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           57 KREPRGIMKPRRVSPEMEAFVGAPEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        57 ~k~~~g~~kp~~LSpeLa~~lG~~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      .++.+|+.+.|+||++|++|+|.++++|++|+++||+|||+||||||+|            |||+|+|.|
T Consensus         2 ~~~~sg~p~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqdp~nkr~I~cD~~L~~lfg~~~v~~   71 (93)
T d1uhra_           2 SSGSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKF   71 (93)
T ss_dssp             CCCCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEG
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCcCHHHHHHHHHHHHHHhcCCCCCCCCEEecCHHHHHHhCCCeecH
Confidence            4567899999999999999999999999999999999999999999984            999999876

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.58  E-value=3.9e-16  Score=109.03  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=41.8

Q ss_pred             CCHHHHhhhC---C---CCcCHHHHHHHHHHHhhhcCCCCccc------------ccCcceeEE
Q 033520           69 VSPEMEAFVG---A---PEIPRTQALKLIWAHIKQHNLQWKTI------------VFGKWECWI  114 (117)
Q Consensus        69 LSpeLa~~lG---~---~e~sR~evvK~lW~YIK~nnLQDP~N------------vFG~d~v~~  114 (117)
                      .|+||++|||   .   ++++|.+|+++||+|||+||||||+|            |||+|+|.+
T Consensus        16 ~S~eL~~FL~~~g~~~~~~~sR~eVtk~iw~YIK~nnLqdp~nkr~I~~D~~L~~Lfg~~~v~~   79 (101)
T d1v32a_          16 GSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFR   79 (101)
T ss_dssp             SCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEET
T ss_pred             CCHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHHHhcCCCCccCCEEccCHHHHHHhCCCcccH
Confidence            6999999984   2   68999999999999999999999995            999999875

>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=0.12  Score=34.16  Aligned_cols=48  Identities=17%  Similarity=0.122  Sum_probs=39.3

Q ss_pred             CCCCHHHHhhh---C--CCCcCHHHHHHHHHHHhhhcCCCCcc-------------cccCcceeEE
Q 033520           67 RRVSPEMEAFV---G--APEIPRTQALKLIWAHIKQHNLQWKT-------------IVFGKWECWI  114 (117)
Q Consensus        67 ~~LSpeLa~~l---G--~~e~sR~evvK~lW~YIK~nnLQDP~-------------NvFG~d~v~~  114 (117)
                      ++..|+|-++|   |  .+.-+.-||+-.+=+||..++|-||.             ++||.+++.+
T Consensus         4 VrPkp~Ll~~L~~~GA~~~~fT~kqVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~l~gv~sFsV   69 (85)
T d2axia1           4 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSV   69 (85)
T ss_dssp             EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEET
T ss_pred             ccCcHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcCCCceee
Confidence            45567777776   5  36789999999999999999999998             3899887653

>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=87.16  E-value=0.24  Score=33.78  Aligned_cols=49  Identities=18%  Similarity=0.164  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHhhh---C--CCCcCHHHHHHHHHHHhhhcCCCCccc-------------ccCcceeE
Q 033520           65 KPRRVSPEMEAFV---G--APEIPRTQALKLIWAHIKQHNLQWKTI-------------VFGKWECW  113 (117)
Q Consensus        65 kp~~LSpeLa~~l---G--~~e~sR~evvK~lW~YIK~nnLQDP~N-------------vFG~d~v~  113 (117)
                      ..++..|+|-++|   |  .+.-+.-||+-.|=+||..+.|-|+.+             +||.+++.
T Consensus        10 ~lVrPkp~LL~~L~~~GA~~~~fT~keVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~llgv~sFs   76 (107)
T d1ttva_          10 KLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFS   76 (107)
T ss_dssp             CCEEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHHTCBCSSCTTEECCSSCHHHHHHTCSCEE
T ss_pred             cccCCCHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcCCCcee
Confidence            4566778888887   5  367899999999999999999999983             88887764

>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]

Probab=86.00  E-value=0.06  Score=35.17  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=22.6

Q ss_pred             CHHHHhhhCCCCcCHHHHHHHHHHHhhhcCC
Q 033520           70 SPEMEAFVGAPEIPRTQALKLIWAHIKQHNL  100 (117)
Q Consensus        70 SpeLa~~lG~~e~sR~evvK~lW~YIK~nnL  100 (117)
                      |.++++.+.....-+.-|=..+++||++|||
T Consensus       181 ST~IR~~i~~g~~i~~lvP~~V~~yI~~~~L  211 (213)
T d1k4ma_         181 ATIIRERLQNGESCEDLLPEPVLTYINQQGL  211 (213)
T ss_dssp             HHHHHHHHHTTCCCTTTSCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCChhHhCCHHHHHHHHHcCC
Confidence            3677777755444455556889999999998