Citrus Sinensis ID: 033540


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
MSAYGVSFSLLFLLILANVISPNESSKINQANGSLSLESKSEEMVPLMEIKTVMMMNETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL
cccccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEcHHHHHHHHcHHHHHcccccccccccccccccccEEEccccEEEEEcccccccEEEEEEcccccccccccc
ccccHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccHHccccEEEccHHHHcccccEEEccccccccccccccccccEEEEEcccccccccEEEEcccccccccccc
MSAYGVSFSLLFLLILANvispnesskinqangslsleskseemvPLMEIKTVMMMNETRRKLNSFQICAvctccggakglclpspccyaincnipnkpfgfcsftpqtcnclrchl
MSAYGVSFSLLFLLILANVIspnesskinqangslsleskseemVPLMEIKTVMMMNETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL
MSAYGVSFSLLFLLILANVISPNESSKINQANGSLSLESKSEEMVPLMEIKTVMMMNETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL
***YGVSFSLLFLLILANVI***************************MEIKTVMMMNETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRC**
****GVSFSLLFLLILANVIS***********************VPL*************RKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL
MSAYGVSFSLLFLLILANVISPNESSKINQANGSLSLESKSEEMVPLMEIKTVMMMNETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL
*SAYGVSFSLLFLLILANVISPNESSKINQAN********SEEMVP*MEIKTVMMMNETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSAYGVSFSLLFLLILANVISPNESSKINQANGSLSLESKSEEMVPLMEIKTVMMMNETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query117
351726656109 uncharacterized protein LOC100306040 pre 0.897 0.963 0.625 8e-34
255543124119 conserved hypothetical protein [Ricinus 0.965 0.949 0.674 1e-33
297837909113 hypothetical protein ARALYDRAFT_475541 [ 0.743 0.769 0.752 5e-30
22414615578 predicted protein [Populus trichocarpa] 0.632 0.948 0.833 6e-30
307135988116 hypothetical protein [Cucumis melo subsp 0.940 0.948 0.663 7e-30
21593890115 unknown [Arabidopsis thaliana] 0.752 0.765 0.744 8e-30
18408246115 uncharacterized protein [Arabidopsis tha 0.752 0.765 0.744 8e-30
21954063105 unknown protein [Arabidopsis thaliana] 0.752 0.838 0.744 1e-29
359476785122 PREDICTED: uncharacterized protein LOC10 0.666 0.639 0.756 1e-29
297735286120 unnamed protein product [Vitis vinifera] 0.666 0.65 0.756 1e-29
>gi|351726656|ref|NP_001236622.1| uncharacterized protein LOC100306040 precursor [Glycine max] gi|356531910|ref|XP_003534519.1| PREDICTED: uncharacterized protein LOC100787156 [Glycine max] gi|255627359|gb|ACU14024.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 94/120 (78%), Gaps = 15/120 (12%)

Query: 1   MSAYGVSFSLLFLLILANVISPNESSKINQANGSLSLESKSEEMVPLME---IKTVMMMN 57
           M A+G+  SL+F+ ILAN     E+S +++ANGS         MVPL+E   ++ +M+MN
Sbjct: 2   MPAHGLIISLIFVSILAN-----EASLVHEANGSF-------PMVPLVEAGKMEMMMVMN 49

Query: 58  ETRRKLNSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL 117
           E+RRKL SFQICA+CTCCGGAKG+CLPSPCCYAINCNIP++PFGFCSFTP+TCNC  CHL
Sbjct: 50  ESRRKLGSFQICALCTCCGGAKGMCLPSPCCYAINCNIPHRPFGFCSFTPKTCNCFGCHL 109




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543124|ref|XP_002512625.1| conserved hypothetical protein [Ricinus communis] gi|223548586|gb|EEF50077.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297837909|ref|XP_002886836.1| hypothetical protein ARALYDRAFT_475541 [Arabidopsis lyrata subsp. lyrata] gi|297332677|gb|EFH63095.1| hypothetical protein ARALYDRAFT_475541 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224146155|ref|XP_002325900.1| predicted protein [Populus trichocarpa] gi|222862775|gb|EEF00282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|307135988|gb|ADN33846.1| hypothetical protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|21593890|gb|AAM65857.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18408246|ref|NP_564848.1| uncharacterized protein [Arabidopsis thaliana] gi|24030191|gb|AAN41276.1| unknown protein [Arabidopsis thaliana] gi|332196234|gb|AEE34355.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21954063|gb|AAK93583.2| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359476785|ref|XP_002279065.2| PREDICTED: uncharacterized protein LOC100249671 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735286|emb|CBI17648.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query117
TAIR|locus:505006203115 AT1G65295 [Arabidopsis thalian 0.897 0.913 0.672 1.2e-35
TAIR|locus:505006576104 AT5G01015 "AT5G01015" [Arabido 0.829 0.932 0.363 1.1e-14
TAIR|locus:505006203 AT1G65295 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 74/110 (67%), Positives = 86/110 (78%)

Query:     9 SLLFLLILANVISPNESSKINQANGSLSLESKSEEM-VPLMEIKTVMMMNETRRKLNSFQ 67
             S++FLL+L   I  + S   +QAN  L  E  +E M VPL E K  M+MNETRRKL SFQ
Sbjct:    10 SIVFLLLLLFSIFISSS---HQANEVLPAEGDNEMMMVPLGEEK-FMVMNETRRKLGSFQ 65

Query:    68 ICAVCTCCGGAKGLCLPSPCCYAINCNIPNKPFGFCSFTPQTCNCLRCHL 117
             IC+VCTCCGGAKGLCLPSPCCYAINCNIPN+PFG+CSFTP+TCNC  CH+
Sbjct:    66 ICSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCHI 115




GO:0005576 "extracellular region" evidence=ISM
TAIR|locus:505006576 AT5G01015 "AT5G01015" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00025103001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (117 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00