Citrus Sinensis ID: 033544

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccHHHHcccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccHHHcc
Coil and Loop (DISEMBL)
MALKLACAVLLMCMVMGAPIAQAAVTCGQvtsslqacipyvtgprggavppaccsgikslnsaatttpdrqSVCNCLKTAAGSIKNLNLNLasrlprqcgvnipyqispsvdcsrvr
Flexible Loop (DISEMBL)
MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLprqcgvnipyqispsvdcsrvr
Low Complexity Region (SEG)
MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR
Disordered region (IsUnstruct)
**LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQI**********
Disordered Region (DISOPRED)
*ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV*
Disordered Region (DISEMBL)
MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNS********QSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISP********
Disordered Region (DISPRO)
MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDC****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
Q43129	120	Non-specific lipid-transf	N/A	no	0.991	0.966	0.649	8e-36
Q42762	116	Non-specific lipid-transf	N/A	no	0.991	1.0	0.649	1e-35
Q39950	116	Non-specific lipid-transf	N/A	no	0.965	0.974	0.598	2e-31
Q43017	117	Non-specific lipid-transf	N/A	no	0.905	0.905	0.605	2e-30
A0AT29	118	Non-specific lipid-transf	N/A	no	0.974	0.966	0.560	4e-30
A0AT31	116	Non-specific lipid-transf	N/A	no	0.965	0.974	0.543	2e-28
A0AT30	118	Non-specific lipid-transf	N/A	no	0.974	0.966	0.543	2e-28
Q9M5X8	117	Non-specific lipid-transf	N/A	no	0.905	0.905	0.568	4e-28
Q43019	123	Non-specific lipid-transf	N/A	no	0.965	0.918	0.559	2e-27
O23758	116	Non-specific lipid-transf	N/A	no	0.957	0.965	0.529	5e-27

>sp|Q43129|NLTP2_GOSHI Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1

 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 91/117 (77%), Gaps = 1/117 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVT GQVT+SL  CI Y+ G   GAVPP CC+GIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           NSAA TTP RQ+ C C+K+AA  I  +N  LAS LP +CGVNIPY+ISPS DC+ V+
Sbjct: 64  NSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
Gossypium hirsutum (taxid: 3635)

>sp|Q42762|NLTP1_GOSHI Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 91/117 (77%), Gaps = 1/117 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVT GQVT+SL  CI Y+ G   GAVPP CC+GIKSL
Sbjct: 1   MSLKLACVVVL-CMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSL 59

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           NSAA TTP RQ+ C C+K+AA  I  +N  LAS LP +CGVNIPY+ISPS DC+ V+
Sbjct: 60  NSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Gossypium hirsutum (taxid: 3635)

>sp|Q39950|NLTP_HELAN Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 90/117 (76%), Gaps = 4/117 (3%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           MA+ + CA +  CMV+GAP  +A ++CGQV+SSL  CI Y+T  +GGAVPPACCSG+KSL
Sbjct: 4   MAMMVLCAGV-TCMVVGAPYTEA-LSCGQVSSSLAPCISYLT--KGGAVPPACCSGVKSL 59

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           NSAA TTPDRQ+ C CLK+A  SI  +N   A+  P +CGV+IPY+ISPS DCS+V+
Sbjct: 60  NSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Helianthus annuus (taxid: 4232)

>sp|Q43017|NLTP1_PRUDU Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 86/109 (78%), Gaps = 3/109 (2%)

Query: 9   VLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTP 68
           V+ +CMV+  PIAQ A+TCGQV+S+L  CIPYV G  GGAVPPACC+GI+++N+ A TTP
Sbjct: 12  VVALCMVVSVPIAQ-AITCGQVSSNLAPCIPYVRG--GGAVPPACCNGIRNVNNLARTTP 68

Query: 69  DRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           DRQ+ CNCLK  + S+  +N N A+ LP +CGVNIPYQISPS +C+ V+
Sbjct: 69  DRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus dulcis (taxid: 3755)

>sp|A0AT29|NLTP2_LENCU Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 87/116 (75%), Gaps = 2/116 (1%)

Query: 2   ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLN 61
            +KLAC VL++CMV+ AP+A+ A++CG VTS L  C+ Y+TG  G +  P CC G+K L 
Sbjct: 4   GMKLACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYLTGGPGPS--PQCCGGVKKLL 61

Query: 62  SAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           +AA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +CGVNIPY+IS + +C+ V+
Sbjct: 62  AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Lens culinaris (taxid: 3864)

>sp|A0AT31|NLTP5_LENCU Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 86/116 (74%), Gaps = 3/116 (2%)

Query: 2   ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLN 61
           ++KLAC VL+MCM++ AP+A+ A++CG VT  L  C+ Y+TG  G +  P CC G+K L 
Sbjct: 4   SMKLACVVLVMCMIV-APMAEGAISCGAVTGDLSPCLTYLTGGPGPS--PQCCGGVKKLL 60

Query: 62  SAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           +AA TTPDRQ+ CNC+K+AA SI  LN N A+ LP +CGVNIPY+IS S +C+ V+
Sbjct: 61  AAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Lens culinaris (taxid: 3864)

>sp|A0AT30|NLTP3_LENCU Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 85/116 (73%), Gaps = 2/116 (1%)

Query: 2   ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLN 61
           ++ LAC  L+MCMV+ AP+A+AAV+CG VT  L  CIPY+TG  G     +CC+G+K L 
Sbjct: 4   SMNLACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTG--GAGPTDSCCAGVKKLL 61

Query: 62  SAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           +AA TT DRQ+ CNCLKTAAG+I NLN   A+ LP +C VNIPY+IS + +C+ ++
Sbjct: 62  AAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Lens culinaris (taxid: 3864)

>sp|Q9M5X8|NLTP_PRUAV Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1

 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 84/109 (77%), Gaps = 3/109 (2%)

Query: 9   VLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTP 68
           V+ +CMV+  PIAQ A+TCGQV+S+L  CI YV G  GGAVPPACC+GI+++N+ A TT 
Sbjct: 12  VVALCMVVSVPIAQ-ALTCGQVSSNLAPCIAYVRG--GGAVPPACCNGIRNINNLAKTTA 68

Query: 69  DRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           DRQ+ CNCLK  + S+  +N N A+ LP +CGVN+PY+ISPS +C+ V+
Sbjct: 69  DRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus avium (taxid: 42229)

>sp|Q43019|NLTP3_PRUDU Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 82/118 (69%), Gaps = 5/118 (4%)

Query: 3   LKLACAVLLMC-MVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLN 61
           LKL C V +MC M +G P A AAV+CGQV ++L  CI YV    GGA+ P+CC+G++SL 
Sbjct: 8   LKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVA--NGGALNPSCCTGVRSLY 65

Query: 62  SAATTTPDRQSVCNCLKTAAGSI--KNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           S A TT DRQS+CNCLK A   I   N N  LA+ LP +CGVNIPY+ISPS DC  ++
Sbjct: 66  SLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Prunus dulcis (taxid: 3755)

>sp|O23758|NLTP_CICAR Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 89/117 (76%), Gaps = 5/117 (4%)

Query: 2   ALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPA-CCSGIKSL 60
           ++K+ C  L+MC+V+ AP+A++A+TCG+V ++L  C+ Y+   +GG  P A CC G+++L
Sbjct: 3   SMKVVCVALIMCIVI-APMAESAITCGRVDTALAPCLGYL---QGGPGPSAQCCGGVRNL 58

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           NSAA TTPDRQ+ CNCLK+AAGSI  LN N A+ LP +C VNIPY+IS S +C+ +R
Sbjct: 59  NSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Cicer arietinum (taxid: 3827)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
7012724	120	lipid transfer protein precursor [Gossyp	0.991	0.966	0.683	7e-37
345104193	120	lipid transfer protein [Gossypium turner	0.982	0.958	0.681	1e-36
11095210	120	lipid transfer protein 3 precursor [Goss	0.991	0.966	0.675	1e-36
324984075	120	lipid transfer protein 3 [Gossypium herb	0.982	0.958	0.681	2e-36
66271047	116	FSLTP3 [Gossypium hirsutum]	0.982	0.991	0.681	2e-36
345104223	120	lipid transfer protein [Gossypium davids	0.982	0.958	0.672	4e-36
345104187	120	lipid transfer protein [Gossypium thurbe	0.982	0.958	0.663	6e-36
345104195	120	lipid transfer protein [Gossypium mustel	0.982	0.958	0.663	9e-36
7012719	120	lipid transfer protein precursor [Gossyp	0.991	0.966	0.666	2e-35
66271045	120	FSLTP2 [Gossypium hirsutum]	0.982	0.958	0.663	3e-35

>gi|7012724|gb|AAF35186.1|AF195865_1 lipid transfer protein precursor [Gossypium hirsutum] gi|208427033|gb|ACI26698.1| lipid transfer protein [Gossypium hirsutum]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 1/117 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M LKLAC V+L CMV+GAP+AQ AVTCGQVTSSL  CI Y+ G   GA+PP CCSGIKSL
Sbjct: 5   MYLKLACVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCINYLRGTGAGAIPPGCCSGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           NSAA TTPDRQ+ C C+K+AA  I  +N  LAS LP +CGVNIPY+ISPS DCS V+
Sbjct: 64  NSAAQTTPDRQAACKCIKSAAAGIPGINFGLASGLPGKCGVNIPYKISPSTDCSSVK 120

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104193|gb|AEN70918.1| lipid transfer protein [Gossypium turneri] gi|345104219|gb|AEN70931.1| lipid transfer protein [Gossypium armourianum] gi|345104221|gb|AEN70932.1| lipid transfer protein [Gossypium harknessii]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 92/116 (79%), Gaps = 1/116 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVTCGQVTSSL  CI Y+ G   GAVPP CC GIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCINYLRGNGAGAVPPGCCGGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NSAA TTPDRQ+ C C+K+AA SI  +N  +AS LP +CGVNIPY+ISPS DC+R 
Sbjct: 64  NSAAQTTPDRQAACKCIKSAAASISGINFGIASGLPGKCGVNIPYKISPSTDCNRF 119

Source: Gossypium turneri

Species: Gossypium turneri

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11095210|gb|AAG29777.1| lipid transfer protein 3 precursor [Gossypium hirsutum] gi|208427031|gb|ACI26697.1| lipid transfer protein [Gossypium hirsutum]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 93/117 (79%), Gaps = 1/117 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVTCGQVT+SL  CI Y+ G   GAVPP CCSGIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGAVTCGQVTNSLAPCINYLRGSGAGAVPPGCCSGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           NSAA TTPDRQ+ C C+K+AA  I  +N  LAS LP +CGVNIPY+ISPS DC+ V+
Sbjct: 64  NSAAQTTPDRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324984075|gb|ADY68820.1| lipid transfer protein 3 [Gossypium herbaceum subsp. africanum] gi|324984079|gb|ADY68822.1| lipid transfer protein 3 [Gossypium barbadense] gi|324984083|gb|ADY68824.1| lipid transfer protein 3 [Gossypium hirsutum] gi|345104199|gb|AEN70921.1| lipid transfer protein [Gossypium darwinii] gi|345104203|gb|AEN70923.1| lipid transfer protein [Gossypium tomentosum] gi|345104207|gb|AEN70925.1| lipid transfer protein [Gossypium barbadense var. brasiliense] gi|345104211|gb|AEN70927.1| lipid transfer protein [Gossypium barbadense var. peruvianum] gi|345104215|gb|AEN70929.1| lipid transfer protein [Gossypium hirsutum subsp. latifolium]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 92/116 (79%), Gaps = 1/116 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVTCGQVT+SL  CI Y+ G   GAVPP CCSGIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGAVTCGQVTNSLAPCINYLRGSGAGAVPPGCCSGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NSAA TTPDRQ+ C C+K+AA  I  +N  LAS LP +CGVNIPY+ISPS DC+R 
Sbjct: 64  NSAAQTTPDRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNRF 119

Source: Gossypium herbaceum subsp. africanum

Species: Gossypium herbaceum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|66271047|gb|AAY43801.1| FSLTP3 [Gossypium hirsutum]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 92/116 (79%), Gaps = 1/116 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVTCGQVT+SL  CI Y+ G   GAVPP CCSGIKSL
Sbjct: 1   MSLKLACVVVL-CMVVGAPLAQGAVTCGQVTNSLAPCINYLRGSGAGAVPPGCCSGIKSL 59

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NSAA TTPDRQ+ C C+K+AA  I  +N  LAS LP +CGVNIPY+ISPS DC+R 
Sbjct: 60  NSAAQTTPDRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNRF 115

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104223|gb|AEN70933.1| lipid transfer protein [Gossypium davidsonii] gi|345104225|gb|AEN70934.1| lipid transfer protein [Gossypium klotzschianum]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 92/116 (79%), Gaps = 1/116 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVTCGQVTSSL  CI Y+TG   G VPP CC GIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCIAYLTGNGAGVVPPRCCGGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NSAA TTPDRQ+ C C+K+AA S+  +N  +AS LP +CGVNIPY+ISPS DC+R 
Sbjct: 64  NSAAQTTPDRQAACKCIKSAAASMSGINYGIASGLPGKCGVNIPYKISPSTDCNRF 119

Source: Gossypium davidsonii

Species: Gossypium davidsonii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104187|gb|AEN70915.1| lipid transfer protein [Gossypium thurberi] gi|345104233|gb|AEN70938.1| lipid transfer protein [Gossypium trilobum]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 91/116 (78%), Gaps = 1/116 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVTCGQVTSSL  C  Y+TG   G+VPP CC GIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCFAYLTGNGAGSVPPRCCGGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NSAA TTPDRQ+ C C+K+AA  I  +N  +AS LP +CGVNIPY+ISPS DC+R 
Sbjct: 64  NSAAQTTPDRQAACKCIKSAAAGISGINYGIASGLPGKCGVNIPYKISPSTDCNRF 119

Source: Gossypium thurberi

Species: Gossypium thurberi

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104195|gb|AEN70919.1| lipid transfer protein [Gossypium mustelinum] gi|345104197|gb|AEN70920.1| lipid transfer protein [Gossypium mustelinum]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 91/116 (78%), Gaps = 1/116 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ AVTCGQVTSSL  CI Y+TG   G VP +CC GIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGAVTCGQVTSSLAPCIAYLTGNGAGGVPSSCCGGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NSAA TTPDRQ+ C C+K+AA  I  +N  +AS LP +CGVNIPY+ISPS DC+R 
Sbjct: 64  NSAAQTTPDRQAACKCIKSAAAGISGINYGIASGLPGKCGVNIPYKISPSTDCNRF 119

Source: Gossypium mustelinum

Species: Gossypium mustelinum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7012719|gb|AAF35184.1|AF195863_1 lipid transfer protein precursor [Gossypium hirsutum] gi|208427039|gb|ACI26701.1| lipid transfer protein [Gossypium hirsutum]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 91/117 (77%), Gaps = 1/117 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L CMV+GAP+AQ  VTCGQVT SL  CI Y+ G   GAVP  CCSGIKSL
Sbjct: 5   MSLKLACVVVL-CMVVGAPLAQGTVTCGQVTGSLAPCINYLRGNGAGAVPQGCCSGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           NSAA TTPDRQ+ C C+K+AA  I  +N  +AS LP +CGVNIPY+ISPS DCSRV+
Sbjct: 64  NSAAQTTPDRQAACKCIKSAAAGIPGINYGIASGLPGKCGVNIPYKISPSTDCSRVK 120

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|66271045|gb|AAY43800.1| FSLTP2 [Gossypium hirsutum]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 91/116 (78%), Gaps = 1/116 (0%)

Query: 1   MALKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
           M+LKLAC V+L  MV+GAP+AQ AVTCGQVT+SL  CI Y+ G   GAVPP CCSGIKSL
Sbjct: 5   MSLKLACVVVLG-MVVGAPLAQGAVTCGQVTNSLAPCINYLRGSGAGAVPPGCCSGIKSL 63

Query: 61  NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NSAA TTPDRQ+ C C+K+AA  I  +N  LAS LP +CGVNIPY+ISP+ DC+R 
Sbjct: 64  NSAAQTTPDRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPNTDCNRF 119

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
TAIR|locus:2064212	118	LP1 "lipid transfer protein 1"	0.957	0.949	0.547	3.8e-30
TAIR|locus:2168474	115	LTP3 "lipid transfer protein 3	0.948	0.965	0.487	3.2e-26
TAIR|locus:2168459	112	LTP4 "lipid transfer protein 4	0.923	0.964	0.487	2.6e-24
TAIR|locus:2064107	118	LTP2 "lipid transfer protein 2	0.957	0.949	0.470	1.1e-23
UNIPROTKB|P83434	91	P83434 "Non-specific lipid-tra	0.769	0.989	0.489	4.8e-23
UNIPROTKB|Q84N29	122	LTP3 "Probable non-specific li	0.948	0.909	0.447	7.8e-23
TAIR|locus:2081855	118	LTP5 "lipid transfer protein 5	0.957	0.949	0.478	7.8e-23
TAIR|locus:2081840	119	LTP12 "lipid transfer protein	0.940	0.924	0.433	2.1e-22
TAIR|locus:2181022	116	AT5G01870 [Arabidopsis thalian	0.914	0.922	0.385	2.1e-20
TAIR|locus:2055828	123	LTP "lipid transfer protein" [	0.940	0.894	0.393	3.1e-19

TAIR|locus:2064212 LP1 "lipid transfer protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 64/117 (54%), Positives = 85/117 (72%)

Query:     3 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLN 61
             +KLAC +LL CM++  PI + AA++CG V S+L ACI YV   +GG +PPACCSG+K+LN
Sbjct:     5 MKLAC-LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVL--QGGVIPPACCSGVKNLN 61

Query:    62 SAATTTPDRQSVCNCLKTAAGSI-KNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             S A TTPDRQ  CNC++ AA ++   LN   A+ +P+ CGVNIPY+IS S +C  VR
Sbjct:    62 SIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/117 (48%), Positives = 79/117 (67%)

Query:     2 ALKL-ACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
             AL+   C VL +C+V       AA++CG V  SL  C  Y++  +GG VPP+CC+G+K+L
Sbjct:     4 ALRFFTCLVLTVCIVASV---DAAISCGTVAGSLAPCATYLS--KGGLVPPSCCAGVKTL 58

Query:    61 NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             NS A TTPDRQ  C C+++ A SI  LN +LAS LP +CGV+IPY IS S +C+ ++
Sbjct:    59 NSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005618 "cell wall" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2168459 LTP4 "lipid transfer protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 57/117 (48%), Positives = 77/117 (65%)

Query:     2 ALKL-ACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSL 60
             AL+   C VL + +V       AA+TCG V SSL  C+ Y++  +GG VPP CC+G+K L
Sbjct:     4 ALRFFTCFVLTVFIVASV---DAAITCGTVASSLSPCLGYLS--KGGVVPPPCCAGVKKL 58

Query:    61 NSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             N  A TTPDRQ  C CL++AA   K +N +LAS LP +CGV+IPY IS S +C+ ++
Sbjct:    59 NGMAQTTPDRQQACRCLQSAA---KGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2064107 LTP2 "lipid transfer protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 55/117 (47%), Positives = 76/117 (64%)

Query:     3 LKLACAVLLMCMVMGAPI-AQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLN 61
             +KLAC VL  CM++  PI A A ++CG V  +L  CI Y+T  RG  +   CC+G+ +L 
Sbjct:     5 MKLACMVLA-CMIVAGPITANALMSCGTVNGNLAGCIAYLT--RGAPLTQGCCNGVTNLK 61

Query:    62 SAATTTPDRQSVCNCLKTAAGSI-KNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             + A+TTPDRQ  C CL++AA ++   LN   A+ LP  C VNIPY+IS S +C+ VR
Sbjct:    62 NMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0012501 "programmed cell death" evidence=IGI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|P83434 P83434 "Non-specific lipid-transfer protein 1" [Vigna radiata var. radiata (taxid:3916)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 45/92 (48%), Positives = 70/92 (76%)

Query:    25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
             +TCGQV  +L  CI ++   +GG VPP+CC+G+K++ +++ TT DR++VC+CLK AAG++
Sbjct:     1 MTCGQVQGNLAQCIGFLQ--KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58

Query:    85 KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
             + +N N A  LP +CGVNIPY+IS S +C+ +
Sbjct:    59 RGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90

GO:0005215 "transporter activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IDA

GO:0008289 "lipid binding" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

UNIPROTKB|Q84N29 LTP3 "Probable non-specific lipid-transfer protein 3" [Triticum aestivum (taxid:4565)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 51/114 (44%), Positives = 75/114 (65%)

Query:     5 LACAVLLMCMV--MGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNS 62
             +A AV+L  +V  M    A AA++CGQV S L  C+ YVTG R  ++   CCSG++ LN 
Sbjct:     9 VAAAVVLAAVVLMMAGREASAALSCGQVDSKLAPCVAYVTG-RASSISKECCSGVQGLNG 67

Query:    63 AATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
              A ++PDR+  C CLK+ A SIK++N+   S +P +CGV++P+ IS S +C+ V
Sbjct:    68 LARSSPDRKIACRCLKSLATSIKSINMGKVSGVPGKCGVSVPFPISMSTNCNNV 121

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2081855 LTP5 "lipid transfer protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 56/117 (47%), Positives = 76/117 (64%)

Query:     3 LKLACAVLLMCMVMGAPIA-QAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLN 61
             LKL+  V++ CM++ AP+A +AA++CG VT SL  C  Y+T  RGG +P  CCSG++ LN
Sbjct:     5 LKLSTLVIV-CMLVTAPMASEAAISCGAVTGSLGQCYNYLT--RGGFIPRGCCSGVQRLN 61

Query:    62 SAATTTPDRQSVCNCLKTAAGSI-KNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             S A TT DRQ  C C++ AA ++   LN   A+RLP  C V I Y IS   +C+ VR
Sbjct:    62 SLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2081840 LTP12 "lipid transfer protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 49/113 (43%), Positives = 70/113 (61%)

Query:     4 KLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSA 63
             K+   ++++ + M +P  ++ + CG VTS+L  C+ Y+T    G +P  CC G+KSL   
Sbjct:     6 KIITCLIVLTIYMASP-TESTIQCGTVTSTLAQCLTYLTN--SGPLPSQCCVGVKSLYQL 62

Query:    64 ATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
             A TTPDR+ VC CLK A   IK LN +L + LP  CGV+IPY IS S +C  +
Sbjct:    63 AQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2181022 AT5G01870 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/114 (38%), Positives = 75/114 (65%)

Query:     9 VLLMCMVMGAPIA---QAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAAT 65
             VL +C+++ +  A   +AA++C  V ++L  C+ YV   +GGA+P +CC+GI+ L+  AT
Sbjct:     5 VLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVV--QGGAIPYSCCNGIRMLSKQAT 62

Query:    66 TTPDRQSVCNCLKTAAG--SIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             +  D+Q VC C+K+  G  S  ++ L  A+ LP +CGV +PY+I PS +C+ ++
Sbjct:    63 SASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2055828 LTP "lipid transfer protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/117 (39%), Positives = 70/117 (59%)

Query:     3 LKLACAVLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPA--CCSGIKSL 60
             +KL C V +  +  G   A+AA++CG+V S+L+ C  Y+T   GG   P   CC+G++ L
Sbjct:     5 MKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTN--GGITSPGPQCCNGVRKL 62

Query:    61 NSAATTTPDRQSVCNCLKTAAGSI-KNLNLNLASRLPRQCGVNIPY--QISPSVDCS 114
             N    TT DR+  C C+K AA ++   LN + A+ +PR+CG+ IPY  QI  +  C+
Sbjct:    63 NGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42952	NLTP1_TOBAC	No assigned EC number	0.5546	0.9401	0.9649	N/A	no
A0AT29	NLTP2_LENCU	No assigned EC number	0.5603	0.9743	0.9661	N/A	no
Q43129	NLTP2_GOSHI	No assigned EC number	0.6495	0.9914	0.9666	N/A	no
Q43748	NLTP_BETVU	No assigned EC number	0.5217	0.9487	0.9487	N/A	no
Q42642	NLTPB_BRAOT	No assigned EC number	0.5086	0.9572	0.9572	N/A	no
Q42616	NLTP3_BRANA	No assigned EC number	0.5086	0.9572	0.9572	N/A	no
Q03461	NLTP2_TOBAC	No assigned EC number	0.5042	0.9401	0.9649	N/A	no
O24418	NLTP6_GOSHI	No assigned EC number	0.5042	0.9914	0.9666	N/A	no
P10976	NLTP_SPIOL	No assigned EC number	0.5391	0.9487	0.9487	N/A	no
Q2QYL2	NLT2B_ORYSJ	No assigned EC number	0.5588	0.8376	0.8376	yes	no
Q39950	NLTP_HELAN	No assigned EC number	0.5982	0.9658	0.9741	N/A	no
A0AT33	NLTP4_LENCU	No assigned EC number	0.57	0.8376	0.8909	N/A	no
A0AT32	NLTP6_LENCU	No assigned EC number	0.5689	0.9743	0.9661	N/A	no
A0AT31	NLTP5_LENCU	No assigned EC number	0.5431	0.9658	0.9741	N/A	no
A0AT30	NLTP3_LENCU	No assigned EC number	0.5431	0.9743	0.9661	N/A	no
Q9M5X6	NLTP_PYRCO	No assigned EC number	0.5130	0.9316	0.9478	N/A	no
Q9M5X7	NLTP_MALDO	No assigned EC number	0.5555	0.8974	0.9130	N/A	no
O24037	NLTP1_SOLPN	No assigned EC number	0.5378	0.9401	0.9649	N/A	no
O24038	NLTP2_SOLPN	No assigned EC number	0.5546	0.9401	0.9649	N/A	no
Q9M5X8	NLTP_PRUAV	No assigned EC number	0.5688	0.9059	0.9059	N/A	no
A2ZAT0	NLTP2_ORYSI	No assigned EC number	0.5490	0.8376	0.8305	N/A	no
Q43017	NLTP1_PRUDU	No assigned EC number	0.6055	0.9059	0.9059	N/A	no
Q42589	NLTP1_ARATH	No assigned EC number	0.5470	0.9572	0.9491	yes	no
P27056	NLTP1_SOLLC	No assigned EC number	0.5378	0.9401	0.9649	N/A	no
Q43019	NLTP3_PRUDU	No assigned EC number	0.5593	0.9658	0.9186	N/A	no
Q42762	NLTP1_GOSHI	No assigned EC number	0.6495	0.9914	1.0	N/A	no
Q43193	NLTP1_SORBI	No assigned EC number	0.5312	0.8119	0.8050	N/A	no
Q3YMR2	NLTP2_SOLCI	No assigned EC number	0.5546	0.9401	0.9649	N/A	no
O23758	NLTP_CICAR	No assigned EC number	0.5299	0.9572	0.9655	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IV3602 RecName- Full=Non-specific lipid-transfer protein;; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues (By similarity) (118 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	117
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	1e-33
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	2e-08
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	1e-05
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	3e-04
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	0.001

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score =  112 bits (281), Expect = 1e-33
 Identities = 55/90 (61%), Positives = 65/90 (72%), Gaps = 1/90 (1%)

Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           ++CGQVTS L  C+ Y+TG  G A  PACCSG+KSLN  A TT DRQ+ CNCLK+AA  I
Sbjct: 1   ISCGQVTSLLAPCLGYLTGG-GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGI 59

Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCS 114
             LN   A+ LP +CGV+IPY ISPS DCS
Sbjct: 60  SGLNPGRAAGLPGKCGVSIPYPISPSTDCS 89

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 47.2 bits (112), Expect = 2e-08
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 27  CGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKN 86
           CGQV   L  C  Y+ G         CCS ++ L +        Q  C  ++     I+ 
Sbjct: 1   CGQVLLKLAPCAGYLQG-GCQVPSQQCCSQLRQLQA--------QCRCTAIRAIVLGIEG 51

Query: 87  LNLNLASRLPRQCGVNIPYQI 107
           +N   A+ LP  CGVN+PY I
Sbjct: 52  INPQAAASLPSMCGVNVPYGI 72

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 9   VLLMCMVMGAPIAQAAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTP 68
           VL + +   A    A  +      SL  C+ Y       A  PACC+ +K+   A     
Sbjct: 1   VLAVLLASAAAAPPAPASAASCADSLLPCLGYCYVNGTAAPSPACCAALKAAVKA----- 55

Query: 69  DRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPY 105
           D   +C+ + +   +   +NL  A  LP+ CG+  P 
Sbjct: 56  DVPCLCDLVTSPLAAGFGINLTRAVALPKACGLTSPP 92

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 27  CGQVTSSLQACIPYVTGPRGGAVPP-ACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIK 85
           CGQV   L  C+ Y+ G   GA P   CCS ++ LNSA          C CL   A  + 
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLNSA---------QCRCLALRAAVLG 51

Query: 86  NL-----NLNLASRLPRQCGVNIPY 105
            L     N   A+ LP  CGV  PY
Sbjct: 52  ILEIPGLNAQNAASLPSACGVPPPY 76

Length = 79

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 34  LQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLK-TAAGSIKNLNLNLA 92
           L  C+ Y+TG    A P  CCSG+KS+  +     D + +C  L    A  +   N   A
Sbjct: 1   LAPCLSYLTGG-ATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRA 54

Query: 93  SRLPRQCGV 101
             LP  CG+
Sbjct: 55  LALPAACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.93
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.56
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.53
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.49
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.43
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	99.04
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.04
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	93.44
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	92.14

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.93  E-value=3.5e-27  Score=152.89  Aligned_cols=89  Identities=62%  Similarity=1.084  Sum_probs=82.5

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      .+|.++...|.||++|+++. ..+|+++||++++++++.+++..|++++|+|+++...++++||.+++++||++||+++|
T Consensus         1 ~~C~~v~~~l~~C~~y~~g~-~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~   79 (89)
T cd01960           1 ISCGQVTSLLAPCLGYLTGG-GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIP   79 (89)
T ss_pred             CCHHHHHhhHHhHHHHHhCC-CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCC
Confidence            36898989999999999985 46899999999999999999999999999999998888756999999999999999999


Q ss_pred             CCCCCCCCCC
Q 033544          105 YQISPSVDCS  114 (117)
Q Consensus       105 ~~i~~~~dC~  114 (117)
                      |+|+++|||+
T Consensus        80 ~~i~~~~dC~   89 (89)
T cd01960          80 YPISPSTDCS   89 (89)
T ss_pred             CCCCCCCCCC
Confidence            9999999996

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.56  E-value=1.6e-15  Score=95.06  Aligned_cols=69  Identities=28%  Similarity=0.644  Sum_probs=54.0

Q ss_pred             chhhccCccCChhhhcCCC-CCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCCC
Q 033544           27 CGQVTSSLQACIPYVTGPR-GGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIPY  105 (117)
Q Consensus        27 C~~~~~~l~pC~~yv~~~~-~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p~  105 (117)
                      |+..+..|.||++|++++. ..+||..||+++|++        +++|+|..++..  .++.||.+++.+||++||+++|.
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~C~C~~~~~~--~~~~i~~~~a~~Lp~~Cgv~~p~   70 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLPCLCRYKTSL--VLQIIDPDKAVYLPAKCGLPLPP   70 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcCCEeeccCCC--cccccCHHHHHHHHHHcCCCCCC
Confidence            5554578999999999752 136899999999984        667777777643  33359999999999999999883

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.53  E-value=3.4e-15  Score=90.46  Aligned_cols=62  Identities=39%  Similarity=0.786  Sum_probs=52.9

Q ss_pred             ccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCC-CHHHHhhhhhhcCC
Q 033544           34 LQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNL-NLNLASRLPRQCGV  101 (117)
Q Consensus        34 l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~i-n~~~a~~Lp~~Cgv  101 (117)
                      |.||++|+++. ..+||++||++++++++     .+++|+|+++++......++ |.+++.+||++||+
T Consensus         1 L~~C~~y~~~~-~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGG-ATAPPSDCCSGLKSVVK-----SDPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCC-CCCCChHHHHHHHHHHh-----cChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            57999999985 46899999999999976     37889999999876654345 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.49  E-value=2.2e-15  Score=97.68  Aligned_cols=71  Identities=38%  Similarity=0.764  Sum_probs=48.6

Q ss_pred             ccCchhhccCccCC---hhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccc-cccCCCCHHHHhhhhhhc
Q 033544           24 AVTCGQVTSSLQAC---IPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAA-GSIKNLNLNLASRLPRQC   99 (117)
Q Consensus        24 ~~~C~~~~~~l~pC---~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~-~~~~~in~~~a~~Lp~~C   99 (117)
                      ..+|.+   .|.||   ..|+.+  ..+||++||+++|++.+     .|..|+|+++++.. ..+ +||.+++.+||++|
T Consensus        19 ~~~c~~---~l~~c~~~~~~~~~--~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~C   87 (96)
T PF14368_consen   19 CCSCAN---SLLPCCPCLCYVTG--GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAAC   87 (96)
T ss_dssp             TTB-HC---CCCHH--HHHHHCC-------HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHC
T ss_pred             cchhHH---HHhccccchhccCC--CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHc
Confidence            345643   46666   788875  67899999999999854     47899999999876 444 89999999999999


Q ss_pred             CCCCCC
Q 033544          100 GVNIPY  105 (117)
Q Consensus       100 gv~~p~  105 (117)
                      |++.|.
T Consensus        88 g~~~~~   93 (96)
T PF14368_consen   88 GVPVPP   93 (96)
T ss_dssp             TSS-S-
T ss_pred             CCCCCC
Confidence            999884

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.43  E-value=6.2e-14  Score=86.43  Aligned_cols=61  Identities=28%  Similarity=0.630  Sum_probs=52.0

Q ss_pred             cCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           32 SSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        32 ~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      ..|.+|++|+++  +.+||++||+.+|+         +.+|+|+++++..... .||.++|.+||++||+++|
T Consensus         4 ~~L~~C~~ai~~--~~~Ps~~CC~~Lk~---------~~~CLC~y~~~p~l~~-~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILG--GSPPSAACCAKLKE---------QQSCLCQYAKNPSLKQ-YVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhC--CCCCCHHHHHHHhc---------CCCCeeeeecCccHHh-hcCcHHHHHHHHHcCCCCC
Confidence            379999999997  56899999999998         3389999998854332 4899999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=99.04  E-value=3.6e-12  Score=81.97  Aligned_cols=68  Identities=29%  Similarity=0.721  Sum_probs=56.0

Q ss_pred             cCccCChhhhcCCCCCccccccccchhhhhhhccCCcCccccccccccccccc----------CCCCHHHHhhhhhhcCC
Q 033544           32 SSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI----------KNLNLNLASRLPRQCGV  101 (117)
Q Consensus        32 ~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~----------~~in~~~a~~Lp~~Cgv  101 (117)
                      ..+.+|..|+++. ...|+..||++++++        +++|.|..++......          .+++..+|.+||+.||+
T Consensus        13 ~~l~~c~~~~~~~-~~~~~~~CC~~L~~l--------~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v   83 (90)
T PF00234_consen   13 VRLSPCLPYLQGG-CQQPSQQCCQQLRQL--------DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNV   83 (90)
T ss_dssp             SHHHGGHHHHTTS-SSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTS
T ss_pred             ccccccHHHHhcc-cccchHHHhHHHHHH--------hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCC
Confidence            4589999999984 457999999999998        5689999998765441          25889999999999999


Q ss_pred             CCCCCCCCCCCC
Q 033544          102 NIPYQISPSVDC  113 (117)
Q Consensus       102 ~~p~~i~~~~dC  113 (117)
                      ++|+     +||
T Consensus        84 ~~~~-----~~C   90 (90)
T PF00234_consen   84 SPPY-----TDC   90 (90)
T ss_dssp             SSSS-----S-G
T ss_pred             CCCC-----CCC
Confidence            9997     666

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.04  E-value=2.1e-10  Score=70.66  Aligned_cols=72  Identities=40%  Similarity=0.780  Sum_probs=55.3

Q ss_pred             chhhccCccCChhhhcCCC-CCccccccccchhhhhhhccCCcCcccccccccccccccCC---CCHHHHhhhhhhcCCC
Q 033544           27 CGQVTSSLQACIPYVTGPR-GGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKN---LNLNLASRLPRQCGVN  102 (117)
Q Consensus        27 C~~~~~~l~pC~~yv~~~~-~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~---in~~~a~~Lp~~Cgv~  102 (117)
                      |......+.+|.+|+++.. ...|+.+||++++.+.       +..|+|..++........   ++.+++.+||+.||+.
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~-------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~   73 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN-------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVP   73 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc-------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCC
Confidence            5555566779999999742 3578899999999974       446888877765444322   5899999999999999


Q ss_pred             CCC
Q 033544          103 IPY  105 (117)
Q Consensus       103 ~p~  105 (117)
                      .++
T Consensus        74 ~~~   76 (79)
T smart00499       74 PPY   76 (79)
T ss_pred             CCC
Confidence            875

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=93.44  E-value=0.044  Score=35.26  Aligned_cols=79  Identities=23%  Similarity=0.454  Sum_probs=48.5

Q ss_pred             chhhccCccCChhhhcC---CCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHH-HHhhhhhhcCCC
Q 033544           27 CGQVTSSLQACIPYVTG---PRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLN-LASRLPRQCGVN  102 (117)
Q Consensus        27 C~~~~~~l~pC~~yv~~---~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~-~a~~Lp~~Cgv~  102 (117)
                      |.....+|.-|.+.+..   .-+.++..+||.-++.+.+.    .-..|+|.-+|.....+-++|.+ ....|-..||..
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~----~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~   77 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL----DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKT   77 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc----hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCc
Confidence            43333467778887711   11235788999999998642    11247777777654442133333 456777889999


Q ss_pred             CCCCCCCCCCC
Q 033544          103 IPYQISPSVDC  113 (117)
Q Consensus       103 ~p~~i~~~~dC  113 (117)
                      .|    .+++|
T Consensus        78 ~p----~gf~C   84 (85)
T PF14547_consen   78 VP----SGFTC   84 (85)
T ss_pred             Cc----CCCcC
Confidence            88    66666

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=92.14  E-value=0.11  Score=33.34  Aligned_cols=73  Identities=25%  Similarity=0.455  Sum_probs=43.8

Q ss_pred             chhhccCccCChhhhcCC---CCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHH-HHhhhhhhcCCC
Q 033544           27 CGQVTSSLQACIPYVTGP---RGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLN-LASRLPRQCGVN  102 (117)
Q Consensus        27 C~~~~~~l~pC~~yv~~~---~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~-~a~~Lp~~Cgv~  102 (117)
                      |.....++.-|.+-+...   .+.+|..+||.-++++.+.    .-..|+|.-+|.....+ ++|.+ +..-|-..||..
T Consensus         4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl----dAA~CLCtaikan~lgi-~~~~pv~l~llln~CGk~   78 (85)
T cd01958           4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL----DAAVCLCTAIKANILGI-SINIPVALSLLLNSCGRN   78 (85)
T ss_pred             CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh----heeeeeeeeeeccccCc-ccccChhHHHHHHHHcCc
Confidence            443334566677765321   1236778999999998653    12347777777544333 34433 334555679999


Q ss_pred             CC
Q 033544          103 IP  104 (117)
Q Consensus       103 ~p  104 (117)
                      .|
T Consensus        79 ~P   80 (85)
T cd01958          79 VP   80 (85)
T ss_pred             CC
Confidence            88

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
2alg_A	92	Crystal Structure Of Peach Pru P3, The Prototypic M		1e-25
2ljo_A	93	3d Solution Structure Of Lipid Transfer Protein Lc-		9e-24
1t12_A	91	Solution Structure Of A New Ltp1 Length = 91		6e-23
1uva_A	91	Lipid Binding In Rice Nonspecific Lipid Transfer Pr		8e-23
1fk0_A	93	Structural Basis Of Non-Specific Lipid Binding In M		8e-22
1siy_A	91	Nmr Structure Of Mung Bean Non-Specific Lipid Trans		2e-21
1be2_A	91	Lipid Transfer Protein Complexed With Palmitate, Nm		7e-21
1mid_A	91	Non-Specific Lipid Transfer Protein 1 From Barley I		8e-21
1bwo_A	90	The Crystal Structure Of Wheat Non-Specific Transfe		4e-18
1cz2_A	90	Solution Structure Of Wheat Ns-Ltp Complexed With P		1e-17

>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member Of The Family Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens Length = 92

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           +TCGQV+SSL  CIPYV G  GGAVPPACC+GI+++N+ A TTPDRQ+ CNCLK  + S+
Sbjct: 2   ITCGQVSSSLAPCIPYVRG--GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASV 59
Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             +N N A+ LP +CGV+IPY+IS S +C+ V+
Sbjct: 60  PGVNPNNAAALPGKCGVSIPYKISASTNCATVK 92

>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2 Length = 93

Iteration: 1
 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
Query: 24  AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
           A++CG VTS L  C+ Y+TG  G +  P CC G+K L +AA TTPDRQ+ CNCLK+AAGS
Sbjct: 1   AISCGAVTSDLSPCLTYLTGGPGPS--PQCCGGVKKLLAAANTTPDRQAACNCLKSAAGS 58
Query: 84  IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           I  LN N A+ LP +CGVNIPY+IS + +C+ V+
Sbjct: 59  ITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 92

>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1 Length = 91

Iteration: 1
 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 69/96 (71%), Gaps = 7/96 (7%)
Query: 24  AVTCGQVTSSLQACIPYV--TGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAA 81
           A+TCGQVTS+L  C+ Y+  TGP G      CC G+K+L ++A TT DRQ  C CLK+AA
Sbjct: 1   AITCGQVTSNLAPCLAYLRNTGPLG-----RCCGGVKALVNSARTTEDRQIACTCLKSAA 55
Query: 82  GSIKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           G+I  +NL  A+ LP  CGVNIPY+ISPS DCS+V+
Sbjct: 56  GAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91

>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1 Complexes From Oryza Sativa Length = 91

Iteration: 1
 Score =  102 bits (253), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPA-CCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
           +TCGQV S++  C+ Y    RGGA P A CCSG++SL +AA+TT DR++ CNCLK AA  
Sbjct: 1   ITCGQVNSAVGPCLTYA---RGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARG 57
Query: 84  IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           IK LN   A+ +P +CGV++PY IS S+DCSRV
Sbjct: 58  IKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 90

>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize Lipid-Transfer Protein Complexes With Capric Acid Revealed By High-Resolution X-Ray Crystallography Length = 93

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 24  AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
           A++CGQV S++  CI Y  G +G      CCSG++SLN+AA TT DR++ CNCLK AA  
Sbjct: 1   AISCGQVASAIAPCISYARG-QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG 59
Query: 84  IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           +  LN   A+ +P +CGV+IPY IS S DCSRV
Sbjct: 60  VSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92

>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer Protein 1 Length = 91

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           +TCGQV  +L  CI ++   +GG VPP+CC+G+K++ +++ TT DR++VC+CLK AAG++
Sbjct: 1   MTCGQVQGNLAQCIGFLQ--KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58
Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           + +N N A  LP +CGVNIPY+IS S +C+ +
Sbjct: 59  RGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90

>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10 Structures Length = 91

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           + CGQV S ++ C+ YV G  G      CC+G++ L++ A ++ DRQ+VCNCLK  A  I
Sbjct: 1   LNCGQVDSKMKPCLTYVQG--GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI 58
Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
            NLNLN A+ +P +C VN+PY ISP +DCSR+
Sbjct: 59  HNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl Length = 91

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           + CGQV S ++ C+ YV G  G      CC+G++ L++ A ++ DRQ+VCNCLK  A  I
Sbjct: 1   LNCGQVDSKMKPCLTYVQG--GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI 58
Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
            NLNLN A+ +P +C VN+PY ISP +DCSR+
Sbjct: 59  HNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer Protein Complexed With Two Molecules Of Phospholipid At 2.1 A Resolution Length = 90

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           + CG V S ++ C+ YV G  G      CC G+K+L++ A +  DRQS CNCLK  A  I
Sbjct: 1   IDCGHVDSLVRPCLSYVQG--GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI 58
Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
            NLN + A  +P +CGVN+PY IS ++DCSRV
Sbjct: 59  HNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With Prostaglandin B2 Length = 90

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 26  TCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIK 85
            CG V S ++ C+ YV G  G      CC G+K+L++ A +  DRQS CNCLK  A  I 
Sbjct: 2   DCGHVDSLVRPCLSYVQG--GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 86  NLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           NLN + A  +P +CGVN+PY IS ++DCSRV
Sbjct: 60  NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	2e-34
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	5e-34
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	7e-34
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	9e-34
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	2e-33
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	6e-04

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score =  113 bits (285), Expect = 2e-34
 Identities = 55/93 (59%), Positives = 73/93 (78%), Gaps = 2/93 (2%)

Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           +TCGQV+SSL  CIPYV G  GGAVPPACC+GI+++N+ A TTPDRQ+ CNCLK  + S+
Sbjct: 2   ITCGQVSSSLAPCIPYVRG--GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASV 59

Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
             +N N A+ LP +CGV+IPY+IS S +C+ V+
Sbjct: 60  PGVNPNNAAALPGKCGVSIPYKISASTNCATVK 92

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score =  112 bits (281), Expect = 5e-34
 Identities = 45/92 (48%), Positives = 69/92 (75%), Gaps = 2/92 (2%)

Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           +TCGQV  +L  CI ++    GG VPP+CC+G+K++ +++ TT DR++VC+CLK AAG++
Sbjct: 1   MTCGQVQGNLAQCIGFLQK--GGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58

Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           + +N N A  LP +CGVNIPY+IS S +C+ +
Sbjct: 59  RGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score =  112 bits (281), Expect = 7e-34
 Identities = 50/94 (53%), Positives = 65/94 (69%), Gaps = 3/94 (3%)

Query: 24  AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
           A+TCGQVTS+L  C+ Y+           CC G+K+L ++A TT DRQ  C CLK+AAG+
Sbjct: 1   AITCGQVTSNLAPCLAYLRN---TGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGA 57

Query: 84  IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRVR 117
           I  +NL  A+ LP  CGVNIPY+ISPS DCS+V+
Sbjct: 58  ISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 91

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score =  111 bits (280), Expect = 9e-34
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 2/92 (2%)

Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           + CG V S ++ C+ YV G  G      CC G+K+L++ A +  DRQS CNCLK  A  I
Sbjct: 1   IDCGHVDSLVRPCLSYVQG--GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI 58

Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
            NLN + A  +P +CGVN+PY IS ++DCSRV
Sbjct: 59  HNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 90

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score =  110 bits (277), Expect = 2e-33
 Identities = 49/93 (52%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 24  AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
           A++CGQV S++  CI Y  G  G      CCSG++SLN+AA TT DR++ CNCLK AA  
Sbjct: 1   AISCGQVASAIAPCISYARGQ-GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG 59

Query: 84  IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           +  LN   A+ +P +CGV+IPY IS S DCSRV
Sbjct: 60  VSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Length = 77

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 23  AAVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAG 82
           A   CG     L  C P V+     +    CC+ ++          D   +C    +   
Sbjct: 1   AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWL 52

Query: 83  SIKNLNLNLASRLPRQCGVNIP 104
               ++  LAS LP+QCG+   
Sbjct: 53  GSFGVDPELASALPKQCGLANA 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.96
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.95
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.95
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.95
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.95
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.94
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.66
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.51
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.46
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	92.42
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	92.16
2ds2_B	72	Sweet protein mabinlin-2 chain B; plant protein, S	83.76
1psy_A	125	2S albumin, RICC3; albumin SEED protein, SEED stor	83.16
2lvf_A	114	2S albumin; allergen, copper binding, hydrophobic	81.18

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.96  E-value=4.3e-32  Score=176.83  Aligned_cols=92  Identities=58%  Similarity=1.097  Sum_probs=86.3

Q ss_pred             ccCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCC
Q 033544           24 AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNI  103 (117)
Q Consensus        24 ~~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~  103 (117)
                      +++|+++...|.||++|+++  ++.|++.||+++|+|++.++|+.||+++|+|+++....+++||.+++++||++||+++
T Consensus         1 AisC~~v~~~L~pCl~Yv~g--~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~   78 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTG--GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNI   78 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTT--SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHhHHHHHcC--CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCC
Confidence            47899999999999999998  4579999999999999999999999999999999877777899999999999999999


Q ss_pred             CCCCCCCCCCCCCC
Q 033544          104 PYQISPSVDCSRVR  117 (117)
Q Consensus       104 p~~i~~~~dC~~i~  117 (117)
                      ||+||+++||++|+
T Consensus        79 p~~Is~~~dC~~v~   92 (93)
T 2ljo_A           79 PYKISTTTNCNTVK   92 (93)
T ss_dssp             SSCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCCCCC
Confidence            99999999999986

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.95  E-value=5.2e-30  Score=166.90  Aligned_cols=92  Identities=52%  Similarity=1.024  Sum_probs=85.4

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      ++|+++...|.||++|++++ ..+|+++||+++|+++++++|+.||+..|.|++....++++||.++|++||++||+++|
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~-~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p   80 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQ-GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP   80 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTS-CCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred             CChHHHHHhccCcHHHHcCC-CCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence            68999999999999999985 45788899999999999999999999999999887777778999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033544          105 YQISPSVDCSRVR  117 (117)
Q Consensus       105 ~~i~~~~dC~~i~  117 (117)
                      |+||++|||++|+
T Consensus        81 ~~is~~~dC~~v~   93 (93)
T 1afh_A           81 YTISTSTDCSRVN   93 (93)
T ss_dssp             SCCSTTCCSSSCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999986

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.95  E-value=2e-29  Score=163.55  Aligned_cols=91  Identities=48%  Similarity=1.030  Sum_probs=83.6

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      ++|+++...|.||++|++++  .+|+++||+++|++++.|+|+.|++..|.|+++.+..+++||.++|++||++||+++|
T Consensus         1 i~C~~v~~~L~pCl~yv~~~--~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p   78 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKG--GVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIP   78 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSC--SCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCS
T ss_pred             CCHHHHHHhccCcHHHHhCC--CCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCC
Confidence            47999999999999999984  3499999999999999999999999999999887777768999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033544          105 YQISPSVDCSRVR  117 (117)
Q Consensus       105 ~~i~~~~dC~~i~  117 (117)
                      |+||++|||++|+
T Consensus        79 ~~is~~~dC~~v~   91 (91)
T 1siy_A           79 YKISTSTNCNSIN   91 (91)
T ss_dssp             SCSCTTSCSSTTC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999986

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.95  E-value=1.5e-29  Score=163.83  Aligned_cols=90  Identities=48%  Similarity=0.944  Sum_probs=83.2

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      ++|+++...|.||++|++++ + +|+++||+++|++++.|+|+.||+..|.|+++.+.++++||.++|++||++||+++|
T Consensus         1 i~C~~v~~~L~pCl~y~~~~-~-~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p   78 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGG-P-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLP   78 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTC-S-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCS
T ss_pred             CCHHHHHHhhcccHHHHcCC-C-CCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCC
Confidence            47999999999999999984 3 499999999999999999999999999999987777768999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q 033544          105 YQISPSVDCSRV  116 (117)
Q Consensus       105 ~~i~~~~dC~~i  116 (117)
                      |+||++|||++|
T Consensus        79 ~~is~~~dC~~v   90 (90)
T 1bwo_A           79 YTISLNIDCSRV   90 (90)
T ss_dssp             SCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCC
Confidence            999999999986

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.95  E-value=1.7e-29  Score=163.88  Aligned_cols=90  Identities=56%  Similarity=1.062  Sum_probs=83.2

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      ++|+++...|.||++|++++ .. |+ +||+++|+|++.++|+.||+..|.|+++....+++||.++|++||++||+++|
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~-~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p   78 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNT-GP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP   78 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTS-SC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred             CChHHHHHhccCcHHHHcCC-CC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence            68999999999999999985 44 88 99999999999999999999999999887667768999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033544          105 YQISPSVDCSRVR  117 (117)
Q Consensus       105 ~~i~~~~dC~~i~  117 (117)
                      |+||++|||++|+
T Consensus        79 ~~is~~~dC~~v~   91 (91)
T 1t12_A           79 YKISPSTDCSKVQ   91 (91)
T ss_dssp             SCSSSSSCCTTCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999986

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.94  E-value=4.2e-29  Score=162.33  Aligned_cols=91  Identities=59%  Similarity=1.140  Sum_probs=82.9

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      ++|+++...|.||++|++++  .+|+++||+++|+|+++|+|+.|++..|.|++.....+++||.++|++||++||+++|
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~--~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p   79 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGG--GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIP   79 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHC--SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCS
T ss_pred             CChHHHHHhccCcHHHHcCC--CCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCC
Confidence            67999999999999999984  4688999999999999999999988888888876666668999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033544          105 YQISPSVDCSRVR  117 (117)
Q Consensus       105 ~~i~~~~dC~~i~  117 (117)
                      |+||++|||++|+
T Consensus        80 ~~is~~~dC~~v~   92 (92)
T 2alg_A           80 YKISASTNCATVK   92 (92)
T ss_dssp             SCSSTTSCGGGCC
T ss_pred             CCCCCCCCCccCC
Confidence            9999999999986

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.66  E-value=5.3e-18  Score=106.39  Aligned_cols=73  Identities=27%  Similarity=0.581  Sum_probs=61.7

Q ss_pred             ccCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCccccccccccc-ccccCCCCHHHHhhhhhhcCCC
Q 033544           24 AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTA-AGSIKNLNLNLASRLPRQCGVN  102 (117)
Q Consensus        24 ~~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~-~~~~~~in~~~a~~Lp~~Cgv~  102 (117)
                      ..+|+++...|.||++|+++++..+||++||+++|+        .|+.|+|..+++. ..++ +||.++|++||++||++
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~--------~~~~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cgv~   72 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADFACLCGYKNSPWLGSF-GVDPELASALPKQCGLA   72 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT--------CCHHHHHTTTTCHHHHHH-TBCHHHHHHHHHHTTCS
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh--------cCcCCcCcccCCcchhhc-CcCHHHHHHHHHHcCCC
Confidence            467999888899999999973246899999999998        3778999888763 4556 79999999999999999


Q ss_pred             CCC
Q 033544          103 IPY  105 (117)
Q Consensus       103 ~p~  105 (117)
                      +|+
T Consensus        73 ~p~   75 (77)
T 2rkn_A           73 NAP   75 (77)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            886

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.51  E-value=6.3e-16  Score=94.64  Aligned_cols=61  Identities=20%  Similarity=0.480  Sum_probs=51.9

Q ss_pred             cCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           32 SSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        32 ~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      +.|.||++|+++  +.+||++||++||+         +..|+|+++++..... +||.++|.+||++||+++|
T Consensus         5 ~~L~pC~~~v~~--~~~Ps~~CC~~lk~---------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILS--GAKPSGECCGNLRA---------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTT--CCCCCHHHHHHHHH---------HSSHHHHGGGCSTTHH-HHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcC--CCCCCHHHHHhhCC---------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            378999999998  45799999999998         3479999899865432 6999999999999999887

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.46  E-value=9.1e-16  Score=94.43  Aligned_cols=61  Identities=25%  Similarity=0.557  Sum_probs=51.8

Q ss_pred             cCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           32 SSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        32 ~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      +.|.||++|+++  +.+||++||+++|+         +..|+|+++++..... +||.++|.+||++||+++|
T Consensus         6 ~~L~pC~~~v~~--~~~Ps~~CC~~lk~---------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIAG--GARPTAACCSSLRA---------QQGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHTT--CCSTTHHHHHHHHH---------HHHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred             hhcccCHHHHcC--CCCCCHHHHHhhCC---------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence            378999999998  45799999999998         2469999898865433 6999999999999999886

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=92.42  E-value=0.046  Score=33.84  Aligned_cols=73  Identities=27%  Similarity=0.553  Sum_probs=48.3

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhh-hhhhcCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASR-LPRQCGVNI  103 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~-Lp~~Cgv~~  103 (117)
                      ..|.    +|.-|.+-+.+.  ..|..+||.-++.+.+.-    -..|+|.-+|.  .++  +|.+...+ |-..||...
T Consensus         6 ~~CP----kLgvCanvL~g~--~~~~~~CC~Ll~GL~dle----AAvCLCtaik~--Lgi--lnlpv~L~llln~Cgk~~   71 (80)
T 1hyp_A            6 PSCP----DLSICLNILGGS--LGTVDDCCALIGGLGDIE----AIVCLCIQLRA--LGI--LNLNRNLQLILNSCGRSY   71 (80)
T ss_dssp             CCSC----CCGGGGGGGGTC--CTTHHHHHHHHHTSCHHH----HHHHHHHHHHH--HTC--SCHHHHHHHHHHHTTCSS
T ss_pred             CCCC----chhHHHHHhCcC--CCCCCccchhhhCcchhh----hhhhhhhhccc--cce--eecChhHHHHHHHhCCcC
Confidence            3466    578898877542  236788999999986531    12477776762  222  46665555 567899998


Q ss_pred             CCCCCCCCCCCC
Q 033544          104 PYQISPSVDCSR  115 (117)
Q Consensus       104 p~~i~~~~dC~~  115 (117)
                      |    +.|.|..
T Consensus        72 P----~gF~C~~   79 (80)
T 1hyp_A           72 P----SNATCPR   79 (80)
T ss_dssp             C----CCCCCSC
T ss_pred             c----CCCCCCC
Confidence            8    6777753

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=92.16  E-value=0.0042  Score=49.33  Aligned_cols=53  Identities=19%  Similarity=0.582  Sum_probs=34.9

Q ss_pred             cccccchhhhhhhccCCcCccccccccccccccc-----C-----CCCHHHHhhhhhhcCCCCC--CCCCCC
Q 033544           51 PACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI-----K-----NLNLNLASRLPRQCGVNIP--YQISPS  110 (117)
Q Consensus        51 ~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~-----~-----~in~~~a~~Lp~~Cgv~~p--~~i~~~  110 (117)
                      .+||+.++.+-+      ..+|-|.-|+......     .     .+ ..+|..||..||+..|  .+|+..
T Consensus       429 ~~cc~~l~~~~~------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~~~~c~~~~~  493 (500)
T 3ob4_A          429 ERCCNELNEFEN------NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRAPQRCDLDVE  493 (500)
T ss_dssp             HHHHHHHGGGTT------CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCCCSCCCCC--
T ss_pred             HHHHHHHHhCCc------ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCCCccCCccCC
Confidence            579999999621      1578888887643321     0     11 3459999999999976  466553

>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai}

Probab=83.76  E-value=0.15  Score=30.81  Aligned_cols=46  Identities=28%  Similarity=0.579  Sum_probs=33.1

Q ss_pred             ccccccchhhhhhhccCCcCcccccccccccccc-------cC----CCCHHHHhhhhhhcCCCC
Q 033544           50 PPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS-------IK----NLNLNLASRLPRQCGVNI  103 (117)
Q Consensus        50 s~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~-------~~----~in~~~a~~Lp~~Cgv~~  103 (117)
                      -..||+.++.+        +..|.|..|+.....       ..    .=...+|..||..||+..
T Consensus         7 ~qqCC~eL~~~--------~~~CrC~aL~~~~~~~~qqgq~~~~qq~~~~~q~a~~LP~~C~l~~   63 (72)
T 2ds2_B            7 LRQCCNQLRQV--------DRPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPN   63 (72)
T ss_dssp             HHHHHHHHTTS--------CGGGHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhc--------CccccCHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhHHhcCCCC
Confidence            35799999996        678999998875521       10    112567899999999973

>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3

Probab=83.16  E-value=0.19  Score=33.52  Aligned_cols=74  Identities=23%  Similarity=0.453  Sum_probs=48.4

Q ss_pred             cCchhhc--cCccCChhhhcCC--CCC-------cc-----------ccccccchhhhhhhccCCcCccccccccccccc
Q 033544           25 VTCGQVT--SSLQACIPYVTGP--RGG-------AV-----------PPACCSGIKSLNSAATTTPDRQSVCNCLKTAAG   82 (117)
Q Consensus        25 ~~C~~~~--~~l~pC~~yv~~~--~~~-------~P-----------s~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~   82 (117)
                      -.|...+  ..|.+|..|+.-.  ...       .|           -..||+.++.+        +..|.|.-|+..+.
T Consensus        16 q~C~~e~qq~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~e~~~qe~~~~qqCC~qL~~~--------~~~C~C~aL~~~v~   87 (125)
T 1psy_A           16 QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAE   87 (125)
T ss_dssp             SSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC--------CSSHHHHHHHHHHH
T ss_pred             cccHHHHHHhhHHHHHHHHHHHHhcccCcchhhhcchhhcccccHHHHHHHHHHHHhc--------CcccccHHHHHHHH
Confidence            3586544  4699999999851  010       12           25699999995        67899999976541


Q ss_pred             ------ccCC--C--CHHHHhhhhhhcCCCCCCC
Q 033544           83 ------SIKN--L--NLNLASRLPRQCGVNIPYQ  106 (117)
Q Consensus        83 ------~~~~--i--n~~~a~~Lp~~Cgv~~p~~  106 (117)
                            .+.+  +  -..+|.+||..||+.-+|+
T Consensus        88 ~~~qQgq~~gqq~~~~~q~A~~LP~~C~i~C~~~  121 (125)
T 1psy_A           88 DQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQ  121 (125)
T ss_dssp             HHHHHTTCCTTCSHHHHHHHHHHHHHHTCSTTTS
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhHHHcCCcCCCC
Confidence                  1111  1  1467889999999944443

>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}

Probab=81.18  E-value=0.23  Score=32.52  Aligned_cols=63  Identities=19%  Similarity=0.494  Sum_probs=41.5

Q ss_pred             CccCChhhhcC----C-CCCccc-------cccccchhhhhhhccCCcCcccccccccccccc-------cCC--CC--H
Q 033544           33 SLQACIPYVTG----P-RGGAVP-------PACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS-------IKN--LN--L   89 (117)
Q Consensus        33 ~l~pC~~yv~~----~-~~~~Ps-------~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~-------~~~--in--~   89 (117)
                      .|..|..|+.-    . +...+.       ..||+.++.+        +..|.|.-|+..+..       +.+  +.  +
T Consensus        17 ~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv--------~~~CrC~aL~~~v~~~~qq~~~~~~~~~~~~~   88 (114)
T 2lvf_A           17 MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMM   88 (114)
T ss_dssp             HHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHS--------CHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHC--------CcCccCHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            48899999872    1 111111       2499999996        668999888764431       111  11  4


Q ss_pred             HHHhhhhhhcCCCC
Q 033544           90 NLASRLPRQCGVNI  103 (117)
Q Consensus        90 ~~a~~Lp~~Cgv~~  103 (117)
                      .+|.+||..||+..
T Consensus        89 q~A~~LP~~C~i~p  102 (114)
T 2lvf_A           89 RLAENIPSRCNLSP  102 (114)
T ss_dssp             HHHHHHHHHHCCCC
T ss_pred             HHHHhChHhcCCCc
Confidence            57899999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-30
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	5e-29

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  101 bits (254), Expect = 2e-30
 Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 2/92 (2%)

Query: 25  VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSI 84
           + CGQV S ++ C+ YV G  G      CC+G++ L++ A ++ DRQ+VCNCLK  A  I
Sbjct: 1   LNCGQVDSKMKPCLTYVQG--GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI 58

Query: 85  KNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
            NLNLN A+ +P +C VN+PY ISP +DCSR+
Sbjct: 59  HNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 90

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 98.8 bits (246), Expect = 5e-29
 Identities = 49/93 (52%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 24  AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGS 83
           A++CGQV S++  CI Y  G  G      CCSG++SLN+AA TT DR++ CNCLK AA  
Sbjct: 1   AISCGQVASAIAPCISYARGQ-GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG 59

Query: 84  IKNLNLNLASRLPRQCGVNIPYQISPSVDCSRV 116
           +  LN   A+ +P +CGV+IPY IS S DCSRV
Sbjct: 60  VSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.96
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.21
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.12
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	91.72
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	90.95
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	88.7
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	82.75

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.96  E-value=5.9e-32  Score=174.60  Aligned_cols=93  Identities=53%  Similarity=1.022  Sum_probs=86.5

Q ss_pred             ccCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCC
Q 033544           24 AVTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNI  103 (117)
Q Consensus        24 ~~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~  103 (117)
                      +++|+++...|.||++|++++ +..|++.||+++++|+++++|+.||+++|+|+++....+.+||.+|+++||++||+++
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~-~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l   79 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQ-GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSI   79 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTC-SSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHhhhhHHHHhCC-CCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCC
Confidence            478999999999999999985 5579999999999999999999999999999998776665899999999999999999


Q ss_pred             CCCCCCCCCCCCCC
Q 033544          104 PYQISPSVDCSRVR  117 (117)
Q Consensus       104 p~~i~~~~dC~~i~  117 (117)
                      ||||++++||++|+
T Consensus        80 ~~pis~~~dCs~i~   93 (93)
T d1fk5a_          80 PYTISTSTDCSRVN   93 (93)
T ss_dssp             SSCCSTTCCGGGCC
T ss_pred             CCCCCCCCCCCcCC
Confidence            99999999999996

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.96  E-value=1.9e-31  Score=171.65  Aligned_cols=91  Identities=49%  Similarity=1.028  Sum_probs=84.9

Q ss_pred             cCchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           25 VTCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        25 ~~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      ++|+++...|.||++|+++  +.+|+..||+++++|++.++|+.|++++|+|+++....+++||.+|+++||++||+++|
T Consensus         1 i~C~~v~~~l~pCl~Yl~g--~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~p   78 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQG--GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVP   78 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTT--CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCCC
T ss_pred             CCHHHHHHHHHhhHHHHcC--CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCCC
Confidence            4799999999999999998  45799999999999999999999999999999987766668999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 033544          105 YQISPSVDCSRVR  117 (117)
Q Consensus       105 ~~i~~~~dC~~i~  117 (117)
                      ||||+++||++|+
T Consensus        79 ~pis~~~dC~~i~   91 (91)
T d1mida_          79 YTISPDIDCSRIY   91 (91)
T ss_dssp             SCCCTTCCGGGCC
T ss_pred             CCCCCCCCCCCCC
Confidence            9999999999986

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.21  E-value=4.7e-13  Score=79.87  Aligned_cols=64  Identities=19%  Similarity=0.494  Sum_probs=55.2

Q ss_pred             chhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           27 CGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        27 C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      |+..  +|+||++.+++  +.+||.+||+.+|+         ++.|+|+++++...+. -||..++.++.+.||+++|
T Consensus         2 C~p~--~L~~C~~Ai~~--g~~PS~~CC~kLke---------Q~~ClC~Y~kdP~~~~-yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQAS--QLAVCASAILS--GAKPSGECCGNLRA---------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCGG--GGGGGHHHHHH--CCCCCHHHHHHHHH---------HGGGHHHHTTCTTTHH-HHTSHHHHHHHHHTTCCCC
T ss_pred             CChh--hccccHHHHhc--CCCCcHHHHHHHHh---------cCCccceecCCccHHH-HcCCHHHHHHHHhcCCCCC
Confidence            4443  69999999998  66899999999999         7789999999975433 4889999999999999988

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.12  E-value=4.8e-13  Score=80.26  Aligned_cols=65  Identities=25%  Similarity=0.559  Sum_probs=55.8

Q ss_pred             CchhhccCccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhhhhhhcCCCCC
Q 033544           26 TCGQVTSSLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASRLPRQCGVNIP  104 (117)
Q Consensus        26 ~C~~~~~~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~Lp~~Cgv~~p  104 (117)
                      .|+..  +|+||++.+++  +.+||.+||+.+|+         ++.|+|+++++...+. .||..++.++...||+++|
T Consensus         2 ~C~p~--~L~~C~~ai~~--g~~PS~~CC~kLke---------Q~~ClC~Y~k~P~~~~-yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNAG--QLTVCTGAIAG--GARPTAACCSSLRA---------QQGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTTT--THHHHHHHHTT--CCSTTHHHHHHHHH---------HHHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred             CCChh--hccccHHHHhC--CCCCcHHHHHHHHh---------cCCccceeccCccHHH-HcCCHHHHHHHHhcCCCCC
Confidence            36544  79999999998  66899999999999         6789999999975442 4899999999999999988

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=91.72  E-value=0.024  Score=36.33  Aligned_cols=78  Identities=23%  Similarity=0.480  Sum_probs=50.7

Q ss_pred             ccCchhh--ccCccCChhhhcCC--C--CCcc-----------c-----cccccchhhhhhhccCCcCcccccccccccc
Q 033544           24 AVTCGQV--TSSLQACIPYVTGP--R--GGAV-----------P-----PACCSGIKSLNSAATTTPDRQSVCNCLKTAA   81 (117)
Q Consensus        24 ~~~C~~~--~~~l~pC~~yv~~~--~--~~~P-----------s-----~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~   81 (117)
                      .-.|...  -..|.+|..|+.-.  .  ...+           .     ..||+.++.+        +..|.|.-|+..+
T Consensus        15 ~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~--------~~~CrC~~l~~~v   86 (125)
T d1psya_          15 SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIA   86 (125)
T ss_dssp             SSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC--------CSSHHHHHHHHHH
T ss_pred             cccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhC--------CcCCcCHHHHHHH
Confidence            3457654  24799999999842  0  0011           0     2599999996        6789998887644


Q ss_pred             cc------cCCCC----HHHHhhhhhhcCCCCCCCCCC
Q 033544           82 GS------IKNLN----LNLASRLPRQCGVNIPYQISP  109 (117)
Q Consensus        82 ~~------~~~in----~~~a~~Lp~~Cgv~~p~~i~~  109 (117)
                      ..      +-+-.    +.+|.+||..||+...-.+..
T Consensus        87 ~~~~qq~~~~~~~~~~~~q~Ak~LPs~C~i~~~~~~~~  124 (125)
T d1psya_          87 EDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRT  124 (125)
T ss_dssp             HHHHHHTTCCTTCSHHHHHHHHHHHHHHTCSTTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChhhcCCcchhhhcc
Confidence            32      11111    568999999999986644443

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=88.70  E-value=0.072  Score=32.95  Aligned_cols=71  Identities=21%  Similarity=0.389  Sum_probs=47.9

Q ss_pred             ccCchhhc---cCccCChhhhcCC----CCCc------cc-cccccchhhhhhhccCCcCcccccccccccccccC---C
Q 033544           24 AVTCGQVT---SSLQACIPYVTGP----RGGA------VP-PACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIK---N   86 (117)
Q Consensus        24 ~~~C~~~~---~~l~pC~~yv~~~----~~~~------Ps-~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~---~   86 (117)
                      .-.|..-+   ..|.+|..|+...    +...      +. ..||+.++.+        +..|.|.-|+.....-.   .
T Consensus         8 ~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~--------~~~CrC~~L~~avq~q~~q~~   79 (103)
T d1s6da_           8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRM   79 (103)
T ss_dssp             SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS--------CGGGSSHHHHHHTTSTTCSST
T ss_pred             cccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC--------CCCCcCHHHHHHHHHHHhHHH
Confidence            45676332   4699999999741    0111      22 4699999996        77899998877544321   1


Q ss_pred             C--CHHHHhhhhhhcCCC
Q 033544           87 L--NLNLASRLPRQCGVN  102 (117)
Q Consensus        87 i--n~~~a~~Lp~~Cgv~  102 (117)
                      +  -...|.+||..||+.
T Consensus        80 ~~~~~q~Ak~LPs~C~i~   97 (103)
T d1s6da_          80 RDQVMSMAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhChHhcCCC
Confidence            1  146789999999986

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=82.75  E-value=0.21  Score=28.98  Aligned_cols=69  Identities=28%  Similarity=0.539  Sum_probs=44.6

Q ss_pred             CccCChhhhcCCCCCccccccccchhhhhhhccCCcCcccccccccccccccCCCCHHHHhh-hhhhcCCCCCCCCCCCC
Q 033544           33 SLQACIPYVTGPRGGAVPPACCSGIKSLNSAATTTPDRQSVCNCLKTAAGSIKNLNLNLASR-LPRQCGVNIPYQISPSV  111 (117)
Q Consensus        33 ~l~pC~~yv~~~~~~~Ps~~CC~~vk~l~~~a~t~~~~~clC~cl~~~~~~~~~in~~~a~~-Lp~~Cgv~~p~~i~~~~  111 (117)
                      .+.-|.+-+.+  ...+..+||.-++.+.+.-    -.-|+|.-+|.  ..+  +|.+...+ |-..||...|    ++|
T Consensus         5 Klg~C~nvLg~--~~~~~~~CC~Ll~GL~dle----AAvCLCtaika--~~l--lnvpv~l~llln~Cgk~~P----~gF   70 (75)
T d1hypa_           5 DLSICLNILGG--SLGTVDDCCALIGGLGDIE----AIVCLCIQLRA--LGI--LNLNRNLQLILNSCGRSYP----SNA   70 (75)
T ss_dssp             CCGGGGGGGGT--CCTTHHHHHHHHHTSCHHH----HHHHHHHHHHH--HTC--SCHHHHHHHHHHHTTCSSC----CCC
T ss_pred             chhhHHHHhcC--ccCCCCCcchHHhhHHHHH----HHHHHHHHHHH--hhh--ccccchHHHHHHHcCCcCc----CCC
Confidence            46667777665  3356788999999986531    12377777774  222  55554433 5568999988    677


Q ss_pred             CCCC
Q 033544          112 DCSR  115 (117)
Q Consensus       112 dC~~  115 (117)
                      .|-+
T Consensus        71 ~CP~   74 (75)
T d1hypa_          71 TCPR   74 (75)
T ss_dssp             CCSC
T ss_pred             cCCC
Confidence            7754