Citrus Sinensis ID: 033577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccHHccccHHHccccHHHHHHHHcccEEEHHHHcccccccccccccccccccccccccccccccHEHcccc
Coil and Loop (DISEMBL)
MAKTLAFLLCVYLFLAALMMDSstvvdagvdqrlswvpakarcqgsmaecmadeefgmdseINRRILATTKYISygalqrdsvpcsqrgasyynchagaqanpysrgcsaitrcrs
Flexible Loop (DISEMBL)
MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNchagaqanpysrgcsAITRCRS
Low Complexity Region (SEG)
MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS
Disordered region (IsUnstruct)
***TLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYS***********
Disordered Region (DISOPRED)
**KTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMA****************TTKYISYGALQRDSVP**********************GCSAITRCR*
Disordered Region (DISEMBL)
MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS
Disordered Region (DISPRO)
**KTLAFLLCVYLFLAALMMDSSTVVD**VDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAIT****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q8L9P8	116	Protein RALF-like 33 OS=A	yes	no	0.844	0.844	0.621	4e-33
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.956	0.925	0.581	6e-30
Q945T0	115	Rapid alkalinization fact	N/A	no	0.956	0.965	0.583	4e-28
Q9LUS7	138	Rapid alkalinization fact	no	no	0.939	0.789	0.480	3e-25
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.5	0.487	0.793	8e-22
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.603	0.636	0.555	4e-15
Q9FZA0	110	Protein RALF-like 4 OS=Ar	no	no	0.586	0.618	0.540	1e-13
Q2HIM9	113	Protein RALF-like 31 OS=A	no	no	0.543	0.557	0.553	3e-13
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.465	0.457	0.625	5e-12
Q9FHA6	129	Protein RALF-like 34 OS=A	no	no	0.810	0.728	0.397	1e-07

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 83/111 (74%), Gaps = 13/111 (11%)

Query: 8   LLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAEC---MADEEFGMDSEINR 64
           +L V+   AA+   SS            +VP +++C G++AEC    A+EEF MDSEINR
Sbjct: 15  ILTVHFLFAAVTSQSSG----------DFVPIESKCNGTIAECSLSTAEEEFEMDSEINR 64

Query: 65  RILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
           RILATTKYISYGAL+R++VPCS+RGASYYNC  GAQANPYSRGCSAITRCR
Sbjct: 65  RILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 80/117 (68%), Gaps = 6/117 (5%)

Query: 6   AFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVP------AKARCQGSMAECMADEEFGMD 59
           +F L + L +  + + SS  V AG    L  V         + C GS+AEC+  EE  MD
Sbjct: 4   SFTLFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAEEEEMD 63

Query: 60  SEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
           SEINRRILATTKYISY +L+R+SVPCS+RGASYYNC  GAQANPYSRGCS I RCRS
Sbjct: 64  SEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 85/120 (70%), Gaps = 9/120 (7%)

Query: 1   MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWV-PAKAR--CQGSMAECMADEEFG 57
           M      +LCV   + A  +  +   D+G      WV PA++   C+GS+ EC+A+EE  
Sbjct: 1   MGVPSGLILCV--LIGAFFISMAAAGDSGA---YDWVMPARSGGGCKGSIGECIAEEEEF 55

Query: 58  -MDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
            +DSE NRRILAT KYISYGALQ++SVPCS+RGASYYNC  GAQANPYSRGCSAITRCRS
Sbjct: 56  ELDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 80/131 (61%), Gaps = 22/131 (16%)

Query: 2   AKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFG---- 57
           A   A LL + +   ++ + S +   AG      + P +  C+G++AEC      G    
Sbjct: 11  AAIFAILLILAVHNWSVAVSSQSTEFAG-----DFPPFETECRGTIAECSVSAALGDGGD 65

Query: 58  -------------MDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPY 104
                        MDSEINRRILAT +YISYGAL+R+++PCS+RGASYYNC  GAQANPY
Sbjct: 66  LFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPY 125

Query: 105 SRGCSAITRCR 115
           SRGCSAITRCR
Sbjct: 126 SRGCSAITRCR 136

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 52/58 (89%)

Query: 58  MDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
            DS+I+RRILA  KYISYGA++R+SVPCS+RGASYYNC  GAQANPYSRGCS ITRCR
Sbjct: 61  FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 2/72 (2%)

Query: 44  QGSMAECMADEEFGMDSEINRRILATTK-YISYGALQRDSVPCSQRGASYYNCHAGAQAN 102
           QG + E   + ++ MDSE NRR LA  + YISYGAL++++VPCS+RG SYY+C    +AN
Sbjct: 35  QGCIGE-DGELDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRAN 93

Query: 103 PYSRGCSAITRC 114
           PY RGCS IT C
Sbjct: 94  PYRRGCSVITHC 105

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 6/74 (8%)

Query: 44  QGSMAECMADEEFG--MDSEINRRILAT-TKYISYGALQRDSVPCSQRGASYYNCHAGAQ 100
           QG + E   D+E    MDSE NRR LA   +YI Y AL++++VPCS+RG SYY+C    +
Sbjct: 35  QGCIGE---DDELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRR 91

Query: 101 ANPYSRGCSAITRC 114
            NPY RGCSAIT C
Sbjct: 92  NNPYRRGCSAITHC 105

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 2/65 (3%)

Query: 51  MADEEFGMDSEINRRIL-ATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCS 109
           + ++E  M +EI+RR+L A  +YI Y  L+RD VPC + GASYY+C +G QAN YSRGC 
Sbjct: 41  IGEDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCD 99

Query: 110 AITRC 114
            ITRC
Sbjct: 100 TITRC 104

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 60  SEINRRILATTK-YISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRC 114
           SEI+RR++   K YISY  L+RD VPC + GASYY C +G QAN Y+RGCS ITRC
Sbjct: 55  SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRC 109

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 22  SSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRD 81
           S T++  G D  +S         G  +  + +E+ G+    +     T  YISYGAL  +
Sbjct: 31  SLTLLPDGFDWPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSAN 90

Query: 82  SVPCSQR-GASYY--NC-HAGAQANPYSRGCSAITRCR 115
            VPC  R G SYY  NC  A    +PYSRGCS+ITRCR
Sbjct: 91  RVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCR 128

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
255582168	116	RALFL33, putative [Ricinus communis] gi|	0.939	0.939	0.690	2e-41
224131172	105	predicted protein [Populus trichocarpa]	0.887	0.980	0.714	1e-36
449531227	121	PREDICTED: protein RALF-like 33-like [Cu	0.931	0.892	0.642	3e-35
225432308	118	PREDICTED: uncharacterized protein LOC10	0.982	0.966	0.627	4e-35
297736875	152	unnamed protein product [Vitis vinifera]	0.982	0.75	0.627	4e-35
147862659	118	hypothetical protein VITISV_037723 [Viti	0.982	0.966	0.627	5e-35
224123582	120	predicted protein [Populus trichocarpa]	1.0	0.966	0.625	8e-35
28628203	120	rapid alkalinization factor 1 precursor	1.0	0.966	0.625	9e-35
225437304	118	PREDICTED: uncharacterized protein LOC10	0.974	0.957	0.636	2e-33
255542726	121	RALFL33, putative [Ricinus communis] gi|	0.956	0.917	0.627	4e-33

>gi|255582168|ref|XP_002531878.1| RALFL33, putative [Ricinus communis] gi|223528486|gb|EEF30515.1| RALFL33, putative [Ricinus communis]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 95/110 (86%), Gaps = 1/110 (0%)

Query: 7   FLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRI 66
           FL   YL L++L++ +STV +A +D +L+WVP  +RCQG++A+CM ++EF MDSEINRRI
Sbjct: 8   FLFTFYLLLSSLIISTSTV-EATIDHKLNWVPKTSRCQGTLADCMQEDEFDMDSEINRRI 66

Query: 67  LATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
           LATT YISYGALQR+++PCSQRGASYYNC  GA+ANPYSRGCSAITRCRS
Sbjct: 67  LATTNYISYGALQRNTIPCSQRGASYYNCQPGAEANPYSRGCSAITRCRS 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131172|ref|XP_002321018.1| predicted protein [Populus trichocarpa] gi|222861791|gb|EEE99333.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 89/105 (84%), Gaps = 2/105 (1%)

Query: 13  LFLAALMMDSSTVVDAGVDQRLSWVPAKAR-CQGSMAECMADEEFGMDSEINRRILATTK 71
           L L+AL++ SSTV DA  D  L+WVP +AR CQG++AECM ++EF MDSEINRRILAT+ 
Sbjct: 2   LLLSALIISSSTV-DASEDHNLNWVPTRARGCQGTVAECMGNDEFEMDSEINRRILATSN 60

Query: 72  YISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
           YISY AL +++VPCSQRGASYYNC  GA+ANPYSRGCSAITRCRS
Sbjct: 61  YISYDALGKNNVPCSQRGASYYNCKTGAEANPYSRGCSAITRCRS 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531227|ref|XP_004172589.1| PREDICTED: protein RALF-like 33-like [Cucumis sativus]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 89/112 (79%), Gaps = 4/112 (3%)

Query: 7   FLLCVYLFLAALMMDSSTVVDAG--VDQRLSWVPAKARCQGSMAECMADEEFGMDSEINR 64
           FL+C  +FL  +   SST V AG  +   L+W+P ++ C+GS+AEC   EEF  DSEINR
Sbjct: 12  FLICAAVFL--IFSCSSTTVHAGLGIQHSLAWIPNQSTCKGSIAECFGGEEFEFDSEINR 69

Query: 65  RILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
           RILAT++YISYGAL+R++VPCS+RGASYYNC  GAQANPYSRGC+AITRCRS
Sbjct: 70  RILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITRCRS 121

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432308|ref|XP_002273386.1| PREDICTED: uncharacterized protein LOC100261311 [Vitis vinifera]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 92/118 (77%), Gaps = 4/118 (3%)

Query: 1   MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQ---RLSWVPAKARCQGSMAECMADEEFG 57
           M  + AF+L +   +A  M+ +S+ VD   D    +L W+PA++ CQGS+AEC+A EEF 
Sbjct: 1   MGNSSAFVL-ICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFE 59

Query: 58  MDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
           MDSEINRRILA+ +YISYGAL R+SVPCS+RGASYYNC  GAQANPY+RGCSAITRCR
Sbjct: 60  MDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736875|emb|CBI26076.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 92/118 (77%), Gaps = 4/118 (3%)

Query: 1   MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQ---RLSWVPAKARCQGSMAECMADEEFG 57
           M  + AF+L +   +A  M+ +S+ VD   D    +L W+PA++ CQGS+AEC+A EEF 
Sbjct: 35  MGNSSAFVL-ICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFE 93

Query: 58  MDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
           MDSEINRRILA+ +YISYGAL R+SVPCS+RGASYYNC  GAQANPY+RGCSAITRCR
Sbjct: 94  MDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862659|emb|CAN83593.1| hypothetical protein VITISV_037723 [Vitis vinifera]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 92/118 (77%), Gaps = 4/118 (3%)

Query: 1   MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQ---RLSWVPAKARCQGSMAECMADEEFG 57
           M  + AF+L +   +A  M+ +S+ VD   D    +L W+PA++ CQGS+AEC+A EEF 
Sbjct: 1   MXNSSAFVL-ICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAGEEFE 59

Query: 58  MDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
           MDSEINRRILA+ +YISYGAL R+SVPCS+RGASYYNC  GAQANPY+RGCSAITRCR
Sbjct: 60  MDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAITRCR 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123582|ref|XP_002330157.1| predicted protein [Populus trichocarpa] gi|118484425|gb|ABK94089.1| unknown [Populus trichocarpa] gi|222871613|gb|EEF08744.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 89/120 (74%), Gaps = 4/120 (3%)

Query: 1   MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPA--KARCQGSMAECMAD--EEF 56
           MAK  ++ L     L  + M  S+ V    D  L W+PA   + C+GS+AECMA+  EEF
Sbjct: 1   MAKRSSWFLISATILILMAMGLSSTVQGSGDHHLGWIPATRSSVCKGSIAECMAEDGEEF 60

Query: 57  GMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
            MD+EINRRILATTKY+SYGALQR++VPCS+RGASYYNC  GAQANPYSRGCS ITRCRS
Sbjct: 61  EMDTEINRRILATTKYVSYGALQRNNVPCSRRGASYYNCQRGAQANPYSRGCSRITRCRS 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28628203|gb|AAO27366.1| rapid alkalinization factor 1 precursor [Populus trichocarpa x Populus deltoides]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 89/120 (74%), Gaps = 4/120 (3%)

Query: 1   MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPA--KARCQGSMAECMAD--EEF 56
           MAK  ++ L     L  + M  S+ V    D  L W+PA   + C+GS+AECMA+  EEF
Sbjct: 1   MAKWSSWFLISATILILMAMGLSSTVQGSGDHHLGWIPATRSSVCKGSIAECMAEDGEEF 60

Query: 57  GMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
            MD+EINRRILATTKY+SYGALQR++VPCS+RGASYYNC  GAQANPYSRGCS ITRCRS
Sbjct: 61  EMDTEINRRILATTKYVSYGALQRNNVPCSRRGASYYNCQRGAQANPYSRGCSRITRCRS 120

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437304|ref|XP_002263387.1| PREDICTED: uncharacterized protein LOC100264106 [Vitis vinifera] gi|147785369|emb|CAN77387.1| hypothetical protein VITISV_033365 [Vitis vinifera] gi|297743857|emb|CBI36827.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 91/121 (75%), Gaps = 8/121 (6%)

Query: 1   MAKTLAFLLCVYLFLAALMMDSSTVVDAGVD-QRLSWVPAK---ARCQGSMAECMAD-EE 55
           MA +    L   +F+AAL   S   V AG D  +L+W PA    A CQGS+AEC+A  +E
Sbjct: 1   MANSNGLFLISSIFVAALFTAS---VSAGGDFSQLNWEPAAKAAATCQGSIAECLAGRDE 57

Query: 56  FGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
           F MD+EINRRILATT+YISYGALQR++VPCSQRGASYYNC  GA+ANPY+RGCS ITRCR
Sbjct: 58  FEMDTEINRRILATTQYISYGALQRNTVPCSQRGASYYNCKPGAEANPYNRGCSTITRCR 117

Query: 116 S 116
           S
Sbjct: 118 S 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542726|ref|XP_002512426.1| RALFL33, putative [Ricinus communis] gi|223548387|gb|EEF49878.1| RALFL33, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 87/118 (73%), Gaps = 7/118 (5%)

Query: 4   TLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVP---AKARCQGSMAECMAD--EEFGM 58
           T  FL+C   F+  L+  S  V  +G    L W+P   + + C+GS+AEC+A   EEF M
Sbjct: 6   TSCFLMCATTFILILIAASPAVQASG--DHLGWIPTIRSSSTCKGSIAECLASNGEEFEM 63

Query: 59  DSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
           DSE +RRILATTKYISYGALQR+SVPCS+RGASYYNC  GAQANPYSRGCS ITRCRS
Sbjct: 64  DSETSRRILATTKYISYGALQRNSVPCSRRGASYYNCQPGAQANPYSRGCSTITRCRS 121

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.896	0.904	0.619	8.8e-31
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.689	0.689	0.759	1.1e-30
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.956	0.925	0.581	1.5e-28
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.534	0.449	0.838	2.5e-28
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.905	0.882	0.571	9.4e-27
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.818	0.863	0.425	1.8e-16
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.931	0.915	0.434	1.3e-15
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.594	0.627	0.561	1.1e-14
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.517	0.530	0.587	1.8e-14
TAIR|locus:2155553	129	RALFL34 "ralf-like 34" [Arabid	0.810	0.728	0.397	3.2e-10

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 70/113 (61%), Positives = 85/113 (75%)

Query:     8 LLCVYLFLAALMMDSSTVVDAGVDQRLSWV-PAKAR--CQGSMAECMADEE-FGMDSEIN 63
             +LCV   + A  +  +   D+G      WV PA++   C+GS+ EC+A+EE F +DSE N
Sbjct:     8 ILCV--LIGAFFISMAAAGDSGA---YDWVMPARSGGGCKGSIGECIAEEEEFELDSESN 62

Query:    64 RRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
             RRILAT KYISYGALQ++SVPCS+RGASYYNC  GAQANPYSRGCSAITRCRS
Sbjct:    63 RRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 63/83 (75%), Positives = 74/83 (89%)

Query:    36 WVPAKARCQGSMAECM---ADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASY 92
             +VP +++C G++AEC    A+EEF MDSEINRRILATTKYISYGAL+R++VPCS+RGASY
Sbjct:    33 FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASY 92

Query:    93 YNCHAGAQANPYSRGCSAITRCR 115
             YNC  GAQANPYSRGCSAITRCR
Sbjct:    93 YNCRRGAQANPYSRGCSAITRCR 115

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 68/117 (58%), Positives = 81/117 (69%)

Query:     6 AFLLCVYLFLAALMMDSSTVVDAGVDQRL---SWVPAK---ARCQGSMAECMADEEFGMD 59
             +F L + L +  + + SS  V AG    L   +W       + C GS+AEC+  EE  MD
Sbjct:     4 SFTLFLTLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAEEEEMD 63

Query:    60 SEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116
             SEINRRILATTKYISY +L+R+SVPCS+RGASYYNC  GAQANPYSRGCS I RCRS
Sbjct:    64 SEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 52/62 (83%), Positives = 58/62 (93%)

Query:    54 EEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITR 113
             EEF MDSEINRRILAT +YISYGAL+R+++PCS+RGASYYNC  GAQANPYSRGCSAITR
Sbjct:    75 EEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITR 134

Query:   114 CR 115
             CR
Sbjct:   135 CR 136

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 64/112 (57%), Positives = 78/112 (69%)

Query:    11 VYLFLAALMMDSSTVVDAG-VDQRLSWVPAKAR-----CQGSMAECMADEE-FGMDSEIN 63
             +Y  +A L +  S V   G     L +V A +      C GS+AEC+A+EE    DS+I+
Sbjct:     7 IYAVIAILAIVISAVESTGDFGDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFDSDIS 66

Query:    64 RRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
             RRILA  KYISYGA++R+SVPCS+RGASYYNC  GAQANPYSRGCS ITRCR
Sbjct:    67 RRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 43/101 (42%), Positives = 61/101 (60%)

Query:    18 LMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADE---EFGMDSEINRRILATTK-YI 73
             L++   T+         +W   K+   G    C+ ++   ++ MDSE NRR LA  + YI
Sbjct:     7 LILGLLTLAVVAESANATWTLTKSCVNGQ--GCIGEDGELDYLMDSETNRRQLAARRSYI 64

Query:    74 SYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRC 114
             SYGAL++++VPCS+RG SYY+C    +ANPY RGCS IT C
Sbjct:    65 SYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 50/115 (43%), Positives = 64/115 (55%)

Query:     1 MAKTLAFLLCVYLFLAALMMDSSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDS 60
             M+++LA    VYL L  L    S  V   +      + A     G + E   +E   M S
Sbjct:     1 MSRSLAL---VYLSLLCLQTHLSISVTVPIPSVNGEIDAMLNRNGVIGEEEGEEM--MPS 55

Query:    61 EINRRILATTK-YISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRC 114
             EI+RR++   K YISY  L+RD VPC + GASYY C +G QAN Y+RGCS ITRC
Sbjct:    56 EISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRC 109

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/73 (56%), Positives = 50/73 (68%)

Query:    44 QGSMAECMADE-EFGMDSEINRRILAT-TKYISYGALQRDSVPCSQRGASYYNCHAGAQA 101
             QG + E   DE E  MDSE NRR LA   +YI Y AL++++VPCS+RG SYY+C    + 
Sbjct:    35 QGCIGE--DDELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRN 92

Query:   102 NPYSRGCSAITRC 114
             NPY RGCSAIT C
Sbjct:    93 NPYRRGCSAITHC 105

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 37/63 (58%), Positives = 46/63 (73%)

Query:    53 DEEFGMDSEINRRIL-ATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAI 111
             DE+  M +EI+RR+L A  +YI Y  L+RD VPC + GASYY+C +G QAN YSRGC  I
Sbjct:    44 DEDL-MPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTI 101

Query:   112 TRC 114
             TRC
Sbjct:   102 TRC 104

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2155553 RALFL34 "ralf-like 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 39/98 (39%), Positives = 51/98 (52%)

Query:    22 SSTVVDAGVDQRLSWVPAKARCQGSMAECMADEEFGMDSEINRRILATTKYISYGALQRD 81
             S T++  G D  +S         G  +  + +E+ G+    +     T  YISYGAL  +
Sbjct:    31 SLTLLPDGFDWPISHSDEFDIIDGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSAN 90

Query:    82 SVPCSQR-GASYY--NC-HAGAQANPYSRGCSAITRCR 115
              VPC  R G SYY  NC  A    +PYSRGCS+ITRCR
Sbjct:    91 RVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCR 128

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0006949 "syncytium formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9P8	RLF33_ARATH	No assigned EC number	0.6216	0.8448	0.8448	yes	no
Q945T0	RALF_TOBAC	No assigned EC number	0.5833	0.9568	0.9652	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.2623.1 hypothetical protein (105 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	116
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	2e-38
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	8e-34
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	1e-31

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score =  125 bits (314), Expect = 2e-38
 Identities = 62/83 (74%), Positives = 73/83 (87%), Gaps = 3/83 (3%)

Query: 36  WVPAKARCQGSMAEC---MADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASY 92
           ++P  ++C G++AEC    A+EEF MDSEINRRILATTKYISYGAL+R++VPCS+RGASY
Sbjct: 36  FMPIDSKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASY 95

Query: 93  YNCHAGAQANPYSRGCSAITRCR 115
           YNC  GAQANPYSRGCSAITRCR
Sbjct: 96  YNCRRGAQANPYSRGCSAITRCR 118

Length = 119

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score =  113 bits (285), Expect = 8e-34
 Identities = 57/95 (60%), Positives = 67/95 (70%), Gaps = 17/95 (17%)

Query: 38  PAKARCQGSMAECMAD-----------------EEFGMDSEINRRILATTKYISYGALQR 80
           P +  C+G++AEC                     EF MDSEINRRILAT +YISYGAL+R
Sbjct: 42  PFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRR 101

Query: 81  DSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCR 115
           +++PCS+RGASYYNC  GAQANPYSRGCSAITRCR
Sbjct: 102 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136

Length = 137

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score =  105 bits (265), Expect = 1e-31
 Identities = 45/65 (69%), Positives = 51/65 (78%)

Query: 51  MADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSA 110
             +    MDS   RR+LA  +YISYGAL+R+SVPCS+RGASYYNC  GA ANPYSRGCSA
Sbjct: 1   EEEALVVMDSPAGRRVLAARRYISYGALRRNSVPCSRRGASYYNCKPGAPANPYSRGCSA 60

Query: 111 ITRCR 115
           ITRCR
Sbjct: 61  ITRCR 65

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PLN03221	137	rapid alkalinization factor 23; Provisional	100.0
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.96

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=7.8e-39  Score=232.53  Aligned_cols=81  Identities=75%  Similarity=1.350  Sum_probs=75.1

Q ss_pred             cccCCCccccchhhhhc---ccccCCcchhcchhhccccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 033577           36 WVPAKARCQGSMAECMA---DEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAIT  112 (116)
Q Consensus        36 ~~~~~~~C~gs~~ec~~---~eE~~m~se~~RR~L~~~~yIsYgaL~~d~vpC~~rG~sy~nC~p~~~aNpY~RGCs~i~  112 (116)
                      |.+....|+|+++||++   |+|++||||++||+|++++||||+||++|++||+++|++||||++++|+|||+|||++||
T Consensus        36 ~~~~~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC~~~~~ANPY~RGCs~IT  115 (119)
T PLN03222         36 FMPIDSKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAIT  115 (119)
T ss_pred             ccCCCCcCCCCHHHhhcccccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCCCCCccccCCCCCCCCCCCCchhhc
Confidence            44445579999999985   679999999999999999999999999999999999999999999899999999999999


Q ss_pred             ccCC
Q 033577          113 RCRS  116 (116)
Q Consensus       113 rCr~  116 (116)
                      ||||
T Consensus       116 rCrR  119 (119)
T PLN03222        116 RCRR  119 (119)
T ss_pred             cccC
Confidence            9997

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=100.00  E-value=1.2e-37  Score=230.61  Aligned_cols=86  Identities=66%  Similarity=1.198  Sum_probs=76.9

Q ss_pred             ccccccccCCCccccchhhhhc--------------c---cccCCcchhcchhhccccccccccCcCCCCCCCCCCCCCC
Q 033577           31 DQRLSWVPAKARCQGSMAECMA--------------D---EEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYY   93 (116)
Q Consensus        31 ~~~~~~~~~~~~C~gs~~ec~~--------------~---eE~~m~se~~RR~L~~~~yIsYgaL~~d~vpC~~rG~sy~   93 (116)
                      ++++.|.+....|+|+++||++              +   +|++||||++||+|++++||||+||++|++||+++|++||
T Consensus        35 ~~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYISYgALrrd~vPCsrrG~SYy  114 (137)
T PLN03221         35 EFAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYY  114 (137)
T ss_pred             cccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCccCHHHhccCCCCCCCCCCCcc
Confidence            3445567767789999999971              2   2778999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCcccccCC
Q 033577           94 NCHAGAQANPYSRGCSAITRCRS  116 (116)
Q Consensus        94 nC~p~~~aNpY~RGCs~i~rCr~  116 (116)
                      ||++++|+|||+|||++||||||
T Consensus       115 nC~~~~pANPY~RGCs~ITRCrR  137 (137)
T PLN03221        115 NCRRGAQANPYSRGCSAITRCRR  137 (137)
T ss_pred             ccCCCCCCCCCCCCcccccccCC
Confidence            99998999999999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.96  E-value=9e-30  Score=169.05  Aligned_cols=66  Identities=68%  Similarity=1.185  Sum_probs=62.9

Q ss_pred             hcccccCCcchhcchhhccccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 033577           51 MADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS  116 (116)
Q Consensus        51 ~~~eE~~m~se~~RR~L~~~~yIsYgaL~~d~vpC~~rG~sy~nC~p~~~aNpY~RGCs~i~rCr~  116 (116)
                      |+|+|+.|++|++||+|++++||||+||++|++||.++|.+|+||.+++|+|||+|||++||||||
T Consensus         1 ~ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    1 MEEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             ChhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence            467899999999999999999999999999999999999999999889999999999999999997

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00