Citrus Sinensis ID: 033599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MAMVTSNMGAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS
Secondary Structure (PSIPRED)
ccEEEccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccccEEcccccccccEEEEcccEEEEEEEEEEEEEEccEEEccccEEEEEEcHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccccEEcccccccccEEEEcccEEEEEEEEEEEEEEcccEcccccccEccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mamvtsnmgayqKTQMLKVVCRKkerdrdhknnihpykvveitpppkclgircfppnlqcgesvtieGQAYTISAVTHRYQlrkgkyepsekrldvLSSSRYILNLYLENLLEQS
Flexible Loop (DISEMBL)
mamvtsnmgayqktqmLKVVCRKKerdrdhknnihpykvveitpppkCLGIRCFPPNLQCGESVTIEGQAYTISAVTHryqlrkgkyepsekrldvlsssrYILNLYLENLLEQS
Low Complexity Region (SEG)
MAMVTSNMGAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRyilnlylenlleQS
Disordered region (IsUnstruct)
***************MLKVVC**********NNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKY*****RLDVLSSSRYILNLYLENL****
Disordered Region (DISOPRED)
**************Q**********************KVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLE**
Disordered Region (DISEMBL)
********GAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS
Disordered Region (DISPRO)
*AMVTSNMGAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMVTSNMGAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
225452332	110	PREDICTED: uncharacterized protein LOC10	0.956	1.0	0.8	2e-46
259490454	118	uncharacterized protein LOC100303883 [Ze	0.991	0.966	0.722	3e-43
242076274	120	hypothetical protein SORBIDRAFT_06g02053	0.991	0.95	0.719	3e-43
326508454	157	predicted protein [Hordeum vulgare subsp	0.991	0.726	0.720	7e-43
326518965	173	predicted protein [Hordeum vulgare subsp	0.991	0.658	0.720	7e-43
356558849	115	PREDICTED: uncharacterized protein LOC10	0.973	0.973	0.758	2e-42
351723319	115	uncharacterized protein LOC100305736 [Gl	0.991	0.991	0.732	3e-42
224140871	112	predicted protein [Populus trichocarpa]	0.869	0.892	0.786	3e-41
194698056	261	unknown [Zea mays]	0.765	0.337	0.818	1e-38
145334677	114	uncharacterized protein [Arabidopsis tha	0.982	0.991	0.681	2e-38

>gi|225452332|ref|XP_002273651.1| PREDICTED: uncharacterized protein LOC100262706 [Vitis vinifera] gi|296087605|emb|CBI34861.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 103/115 (89%), Gaps = 5/115 (4%)

Query: 1   MAMVTSNMGAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQC 60
           MAM  SN+ AYQK++ L++ CRKK+R+RDH    HPYKV+EITPPPK LG+RCFP NLQC
Sbjct: 1   MAMA-SNLPAYQKSRGLQIFCRKKDRERDH----HPYKVIEITPPPKNLGVRCFPSNLQC 55

Query: 61  GESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 115
           GESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLS+ RYILNLYLENLL+QS
Sbjct: 56  GESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLQQS 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490454|ref|NP_001158949.1| uncharacterized protein LOC100303883 [Zea mays] gi|195610298|gb|ACG26979.1| hypothetical protein [Zea mays] gi|413918697|gb|AFW58629.1| hypothetical protein ZEAMMB73_224163 [Zea mays]

 Score =  179 bits (453), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 100/119 (84%), Gaps = 5/119 (4%)

Query: 1   MAMVTSNMGAYQKTQMLKVVCRK----KERDRDHKNNIHPYKVVEITPPPKCLGIRCFPP 56
           MAMV S   AY K +   VVCRK    ++R+RD K + HP+KVVEITPPP+CLG+RCFP 
Sbjct: 1   MAMVASTSFAYHKPR-FAVVCRKNRDGRDRERDGKEHKHPFKVVEITPPPRCLGVRCFPT 59

Query: 57  NLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 115
           N+ CGESVTIEGQAYT+SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL+NLL+QS
Sbjct: 60  NIHCGESVTIEGQAYTVSAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLQNLLDQS 118

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076274|ref|XP_002448073.1| hypothetical protein SORBIDRAFT_06g020530 [Sorghum bicolor] gi|241939256|gb|EES12401.1| hypothetical protein SORBIDRAFT_06g020530 [Sorghum bicolor]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 100/121 (82%), Gaps = 7/121 (5%)

Query: 1   MAMVTSNMGAYQKTQMLKVVCRK------KERDRDHKNNIHPYKVVEITPPPKCLGIRCF 54
           MAMV S    Y K + L VVCRK      +ER+RD K + HP+KVVEITPPP+CLG+RCF
Sbjct: 1   MAMVASTSFTYHKPR-LAVVCRKNKDGRDRERERDGKEHKHPFKVVEITPPPRCLGVRCF 59

Query: 55  PPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQ 114
           P N+ CGESVTIEGQAYT+SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL+NLL+Q
Sbjct: 60  PTNIHCGESVTIEGQAYTVSAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLQNLLDQ 119

Query: 115 S 115
           S
Sbjct: 120 S 120

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508454|dbj|BAJ99494.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 101/118 (85%), Gaps = 4/118 (3%)

Query: 1   MAMVTSNMGAYQKTQMLKVVCRKKERDRD---HKNNIHPYKVVEITPPPKCLGIRCFPPN 57
           MAMV S   AY K + L V+CRKK+RDR+    K + HP+KVVEITPPP+CLG+RCFP N
Sbjct: 41  MAMVASTSIAYHKPR-LSVLCRKKDRDRELEREKEHKHPFKVVEITPPPRCLGVRCFPTN 99

Query: 58  LQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 115
           + CGESVTIEGQAYT+SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL++LL++S
Sbjct: 100 IHCGESVTIEGQAYTVSAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLDSLLDKS 157

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518965|dbj|BAJ92643.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 101/118 (85%), Gaps = 4/118 (3%)

Query: 1   MAMVTSNMGAYQKTQMLKVVCRKKERDRD---HKNNIHPYKVVEITPPPKCLGIRCFPPN 57
           MAMV S   AY K + L V+CRKK+RDR+    K + HP+KVVEITPPP+CLG+RCFP N
Sbjct: 57  MAMVASTSIAYHKPR-LSVLCRKKDRDRELEREKEHKHPFKVVEITPPPRCLGVRCFPTN 115

Query: 58  LQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 115
           + CGESVTIEGQAYT+SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL++LL++S
Sbjct: 116 IHCGESVTIEGQAYTVSAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLDSLLDKS 173

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558849|ref|XP_003547715.1| PREDICTED: uncharacterized protein LOC100812628 [Glycine max]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 100/116 (86%), Gaps = 4/116 (3%)

Query: 3   MVTSNMG--AYQKTQMLKVVC-RKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
           M + NMG  + QKT   +V C RK++RDR+ + +I PYKVVEITPPPK LG+RC PPNLQ
Sbjct: 1   MASWNMGLASCQKTMSFEVSCSRKRDRDRE-RGSILPYKVVEITPPPKSLGVRCLPPNLQ 59

Query: 60  CGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 115
           CGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLS+ RY++NLYLENLLEQS
Sbjct: 60  CGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSTGRYLVNLYLENLLEQS 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723319|ref|NP_001235995.1| uncharacterized protein LOC100305736 [Glycine max] gi|255626475|gb|ACU13582.1| unknown [Glycine max]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 98/116 (84%), Gaps = 2/116 (1%)

Query: 1   MAMVTSNMGAYQKTQMLKVVC-RKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
           MA       ++QKT   +V C RK++RDR+ + +I PYKVVEITPPPK LG+RC PPNLQ
Sbjct: 1   MASWKMGFASFQKTMSFEVSCNRKRDRDRE-RGSILPYKVVEITPPPKSLGVRCLPPNLQ 59

Query: 60  CGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 115
           CGE+VTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLS+ RY++NLYLENLLEQS
Sbjct: 60  CGENVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSTGRYLVNLYLENLLEQS 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140871|ref|XP_002323802.1| predicted protein [Populus trichocarpa] gi|222866804|gb|EEF03935.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 89/103 (86%), Gaps = 3/103 (2%)

Query: 1   MAMVTSNMGAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQC 60
           M M + N+GAYQKT  L V CRKKERDRD     +PYKV+E+TPPPK LGIRCFPPNLQC
Sbjct: 1   MTMASWNVGAYQKTPALDVTCRKKERDRDRS---YPYKVIEVTPPPKNLGIRCFPPNLQC 57

Query: 61  GESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYI 103
           GESVTIEGQAYTIS+VTHRYQLR+GKYEPSEKRLDVLS+ RYI
Sbjct: 58  GESVTIEGQAYTISSVTHRYQLRRGKYEPSEKRLDVLSTGRYI 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194698056|gb|ACF83112.1| unknown [Zea mays]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 82/88 (93%)

Query: 28  RDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKY 87
           RD K + HP+KVVEITPPP+CLG+RCFP N+ CGESVTIEGQAYT+SAVTHRYQLRKG+Y
Sbjct: 174 RDGKEHKHPFKVVEITPPPRCLGVRCFPTNIHCGESVTIEGQAYTVSAVTHRYQLRKGRY 233

Query: 88  EPSEKRLDVLSSSRYILNLYLENLLEQS 115
           EPSEKRLDVLS+ RYILNLYL+NLL+QS
Sbjct: 234 EPSEKRLDVLSTGRYILNLYLQNLLDQS 261

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334677|ref|NP_001078684.1| uncharacterized protein [Arabidopsis thaliana] gi|332007172|gb|AED94555.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 93/116 (80%), Gaps = 3/116 (2%)

Query: 1   MAMVTSNMGAYQKTQM-LKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
           MA V SN+    K    L++ CRKKE+ RD  +  +PYKV+EITPPPK LGIRC P NLQ
Sbjct: 1   MATVASNLACIGKVGWRLQINCRKKEKGRDQSH--YPYKVIEITPPPKSLGIRCLPHNLQ 58

Query: 60  CGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 115
           CGE+V IEGQ YTISAVTHRYQLRKGKYEPSE+RLDVLS++RY+LNLY +NLL+ S
Sbjct: 59  CGENVMIEGQTYTISAVTHRYQLRKGKYEPSERRLDVLSAARYVLNLYFDNLLQNS 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2168723	123	AT5G40500 "AT5G40500" [Arabido	0.860	0.804	0.639	2e-31

TAIR|locus:2168723 AT5G40500 "AT5G40500" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 71/111 (63%), Positives = 82/111 (73%)

Query:     1 MAMVTSNMGAYQKTQM----------LKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLG 50
             MA V SN+    K  M          L++ CRKKE+ RD  +  +PYKV+EITPPPK LG
Sbjct:     1 MATVASNLACIGKVTMSRASSMVGWRLQINCRKKEKGRDQSH--YPYKVIEITPPPKSLG 58

Query:    51 IRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSR 101
             IRC P NLQCGE+V IEGQ YTISAVTHRYQLRKGKYEPSE+RLDVLS++R
Sbjct:    59 IRCLPHNLQCGENVMIEGQTYTISAVTHRYQLRKGKYEPSERRLDVLSAAR 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.390    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      115       103   0.00091  102 3  11 22  0.42    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.78u 0.14s 11.92t   Elapsed:  00:00:01
  Total cpu time:  11.78u 0.14s 11.92t   Elapsed:  00:00:01
  Start:  Tue May 21 00:07:12 2013   End:  Tue May 21 00:07:13 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PF13856	95	Gifsy-2: ATP-binding sugar transporter from pro-ph	92.05
PF08207	58	EFP_N: Elongation factor P (EF-P) KOW-like domain;	84.35
PRK10377	120	PTS system glucitol/sorbitol-specific transporter	81.27
PF05954	292	Phage_GPD: Phage late control gene D protein (GPD)	80.29

>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A

Probab=92.05  E-value=0.39  Score=32.89  Aligned_cols=32  Identities=31%  Similarity=0.659  Sum_probs=21.2

Q ss_pred             EcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEe
Q 033599           53 CFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEP   89 (115)
Q Consensus        53 ~Lp~~pqpG~~leleg~sY~VlerrHRYqLr~GRY~l   89 (115)
                      .+++ |++|+.|+++|++|+|..    ++...|.|++
T Consensus        62 d~~~-P~~gd~v~~dG~~y~V~~----~~~~~G~~~I   93 (95)
T PF13856_consen   62 DYPK-PRRGDRVVIDGESYTVTR----FQEEDGMYVI   93 (95)
T ss_dssp             S------TT-EEEETTEEEEEEE----EEEETTEEEE
T ss_pred             CCCC-CCCCCEEEECCeEEEEeE----EecCCCEEEE
Confidence            4555 999999999999999974    5566688765

>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors

Probab=84.35  E-value=2.2  Score=27.19  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=19.4

Q ss_pred             CCCCCeEEEcCeEEEEEEEEEEE
Q 033599           58 LQCGESVTIEGQAYTISAVTHRY   80 (115)
Q Consensus        58 pqpG~~leleg~sY~VlerrHRY   80 (115)
                      ..+|..|+++|+-|.|++..|.=
T Consensus         5 lr~G~~i~~~g~~~~V~~~~~~k   27 (58)
T PF08207_consen    5 LRKGMVIEIDGEPYVVLDFQHVK   27 (58)
T ss_dssp             --TTSEEEETTEEEEEEEEEEEC
T ss_pred             ccCCCEEEECCEEEEEEEEEEEC
Confidence            46899999999999999998864

; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.

>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional

Probab=81.27  E-value=2.4  Score=31.22  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             EcCCCCCCCCeEEEcCeEEEEEEE
Q 033599           53 CFPPNLQCGESVTIEGQAYTISAV   76 (115)
Q Consensus        53 ~Lp~~pqpG~~leleg~sY~Vler   76 (115)
                      .++...++|+.+.++++.|.|..+
T Consensus        47 ~~~~~i~~Gd~l~i~~~~Y~ItaV   70 (120)
T PRK10377         47 ELKGALQPGLQFELGQHRYPVTAV   70 (120)
T ss_pred             cccCccCCCCEEEECCEEEEEEEE
Confidence            456778999999999999999876

>PF05954 Phage_GPD: Phage late control gene D protein (GPD); PDB: 2P5Z_X 3D37_A 1WRU_A 3CDD_E

Probab=80.29  E-value=2  Score=32.54  Aligned_cols=24  Identities=38%  Similarity=0.696  Sum_probs=21.5

Q ss_pred             CCCCCeEEEcC-------eEEEEEEEEEEEE
Q 033599           58 LQCGESVTIEG-------QAYTISAVTHRYQ   81 (115)
Q Consensus        58 pqpG~~leleg-------~sY~VlerrHRYq   81 (115)
                      ..||..|++.|       ..|+|.+++|++.
T Consensus       259 l~~G~~v~l~~~~~~~~~g~y~I~~V~h~~~  289 (292)
T PF05954_consen  259 LRPGRRVTLSGHPGGEFDGEYLITEVEHSFS  289 (292)
T ss_dssp             B-TTEEEEEEETTTTCEEEEEEEEEEEEEEE
T ss_pred             ECcCCEEEEcCCcCccCCCcEEEEEEEEEEE
Confidence            69999999999       7899999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
2pp6_A	102	Gifsy-2 prophage ATP-binding sugar transporter-LI	87.08

>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2

Probab=87.08  E-value=1.4  Score=31.33  Aligned_cols=51  Identities=16%  Similarity=0.142  Sum_probs=35.3

Q ss_pred             cceEEEEeCCCCceeeeEEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEe
Q 033599           35 HPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEP   89 (115)
Q Consensus        35 lP~EV~~~tpp~r~LG~~~Lp~~pqpG~~leleg~sY~VlerrHRYqLr~GRY~l   89 (115)
                      .|-|.--++++.++|=.+.=.--|+-|+-|..+|+.|+|.    ||++..|+.++
T Consensus        41 ~~~emg~lsG~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vt----r~~~~ngk~~i   91 (102)
T 2pp6_A           41 FLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT----RIRRFNGKPQL   91 (102)
T ss_dssp             GTC--------CEEEEECCSSCCCCTTCEEEETTEEEEEE----EEEEETTEEEE
T ss_pred             hHHHhCCccCCceEEEEecCCcccCCCCEEEEcCcEEEEE----EEEEECCcEEE
Confidence            4445555688888888875555599999999999999995    68888999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d2pp6a1	93	Gifsy-2 prophage protein STM1035 {Salmonella typhi	82.5
d1ueba1	63	Elongation factor P N-terminal domain {Thermus the	81.85

>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Phage tail proteins
superfamily: Phage tail proteins
family: gpFII-like
domain: Gifsy-2 prophage protein STM1035
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.50  E-value=1.5  Score=29.10  Aligned_cols=52  Identities=15%  Similarity=0.149  Sum_probs=34.4

Q ss_pred             cceEEEEeCCCCceeeeEEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEec
Q 033599           35 HPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPS   90 (115)
Q Consensus        35 lP~EV~~~tpp~r~LG~~~Lp~~pqpG~~leleg~sY~VlerrHRYqLr~GRY~l~   90 (115)
                      .|-|.--++++.++|=...=.--|.-|+-|..+|+.|+|.    ||+.-+|++++.
T Consensus        38 ~~~em~al~G~~rsLvvFSs~ykPrr~D~Vv~~G~~~~VT----r~~~~ngk~~i~   89 (93)
T d2pp6a1          38 FLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT----RIRRFNGKPQLT   89 (93)
T ss_dssp             GTC--------CEEEEECCSSCCCCTTCEEEETTEEEEEE----EEEEETTEEEEE
T ss_pred             ChhhcCCccCCceEEEEEcCCcccCCCCeEEecCcEEEEE----EEEEECCcEEEE
Confidence            3445556788899998753333499999999999999995    678889998863

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=81.85  E-value=0.9  Score=27.14  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEcCeEEEEEEEEEEEEEecc
Q 033599           57 NLQCGESVTIEGQAYTISAVTHRYQLRKG   85 (115)
Q Consensus        57 ~pqpG~~leleg~sY~VlerrHRYqLr~G   85 (115)
                      ...+|..|+++|+-|.|++..|+=.=++|
T Consensus         6 elkkG~~i~~~g~~~~V~~~~~~kpgkg~   34 (63)
T d1ueba1           6 DLRPGTKVKMDGGLWECVEYQHQKLGRGG   34 (63)
T ss_dssp             GCCTTCEEEETTEEEEEEEEEEEEETTSC
T ss_pred             HCCCCCEEEECCEEEEEEEEEEEcCCCCc
Confidence            35789999999999999999998554443