Citrus Sinensis ID: 033611

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV
Secondary Structure (PSIPRED)
ccccccccccEEEEccccccccccccccccHHHccccHHHHHHHHcccccccccccHHHHcccccccEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHcEEccccEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEc
Coil and Loop (DISEMBL)
mvsglinanpvvyekkerrarsasscvndeyaaeqidqqevfdhvrdikdpehpyslEELKVITEdaievddersyvrvtFTPTVEHCSMATVIGLCLRVKLmrslpprfkvrrv
Flexible Loop (DISEMBL)
mvsglinanpvvyekkerrarsaSSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITedaievdderSYVRVTftptvehcsmATVIGLCLRVklmrslpprfkvrrv
Low Complexity Region (SEG)
MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV
Disordered region (IsUnstruct)
***************************************EVFDHVRDIK***HPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRS**********
Disordered Region (DISOPRED)
*VSGLINANPVVYE****************YAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV
Disordered Region (DISEMBL)
MVSGLINANPVVYE**************DEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV
Disordered Region (DISPRO)
****LINA**V*Y*******************AEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q9C9G6	157	MIP18 family protein At1g	yes	no	0.965	0.707	0.723	4e-44
Q9VTC4	156	MIP18 family protein CG79	yes	no	0.956	0.705	0.508	3e-28
O62252	160	MIP18 family protein F45G	yes	no	0.930	0.668	0.527	3e-27
Q9SR25	149	MIP18 family protein At3g	no	no	0.895	0.691	0.530	1e-26
Q9D187	163	Mitotic spindle-associate	yes	no	0.921	0.650	0.527	2e-26
Q9Y3D0	163	Mitotic spindle-associate	yes	no	0.921	0.650	0.509	5e-26
Q54QK1	163	MIP18 family protein FAM9	yes	no	0.913	0.644	0.452	9e-22
Q9UTL0	179	MIP18 family protein C144	yes	no	0.973	0.625	0.413	3e-18
P38829	231	MIP18 family protein YHR1	yes	no	0.834	0.415	0.435	1e-17
Q9H5X1	160	MIP18 family protein FAM9	no	no	0.634	0.456	0.552	3e-17

>sp|Q9C9G6|U195A_ARATH MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2

 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 98/112 (87%), Gaps = 1/112 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVSGLIN NP++Y KKERR R+ +S + DE   E IDQ E+FDH+RDIKDPEHP +LE+L
Sbjct: 1   MVSGLINENPIIYPKKERRLRTDTS-ITDELTPEPIDQLEIFDHIRDIKDPEHPNTLEDL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           +V+TED++EVDDE SYVRVTFTPTVEHCSMATVIGLC+RVKL+RSLP R+K+
Sbjct: 60  RVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKI 111

May play a role in chromosome segregation through establishment of sister chromatid cohesion.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9VTC4|U195A_DROME MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 82/112 (73%), Gaps = 2/112 (1%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           M + + N NP VY++ + R  +A+    DE   +  D++E+FD +R+I DPEHP +LEEL
Sbjct: 1   MPTEIENINPNVYDRIKERVLTANE--EDENVPDPFDKREIFDLIRNINDPEHPLTLEEL 58

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
            V+ ED I ++D ++ V ++FTPT+ HCSMAT+IGL +RVKL+RSLPPRFKV
Sbjct: 59  HVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKV 110

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Drosophila melanogaster (taxid: 7227)

>sp|O62252|U195_CAEEL MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=1 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 3/110 (2%)

Query: 5   LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
           L NANP +++ K R  R  +    DE   + ID  E+FD +RDI DPEHPY+LE+L V+ 
Sbjct: 6   LDNANPTLFDSKPRH-RPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQ 64

Query: 65  EDAIEV--DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           E+ I+V  D+E ++V+V FTPT+ HCSMAT+IGL +RVKL+RSL P+ KV
Sbjct: 65  EELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKV 114

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9SR25|U195B_ARATH MIP18 family protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 10/113 (8%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHP-YSLEE 59
           M S L N NP++Y K+ RR R+  S   DE+++         + +RDIKDPEHP  SLE+
Sbjct: 1   MDSVLTNKNPIIYPKRTRRYRTDQSST-DEFSST--------NRIRDIKDPEHPELSLED 51

Query: 60  LKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           L V+TE+++EVDD +SYVR+TFTPT+ HC + T IGLC+ VKL++SLP RFKV
Sbjct: 52  LNVLTEESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKV 104

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9D187|MIP18_MOUSE Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 2/108 (1%)

Query: 5   LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
           L NANP++YE+   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V+ 
Sbjct: 12  LENANPLIYERSGERPVTAGE--EDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNVVE 69

Query: 65  EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           +  I+V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct: 70  QVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Mus musculus (taxid: 10090)

>sp|Q9Y3D0|MIP18_HUMAN Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo sapiens GN=FAM96B PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 75/108 (69%), Gaps = 2/108 (1%)

Query: 5   LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
           L NANP++Y++   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V+ 
Sbjct: 12  LENANPLIYQRSGERPVTAGE--EDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVE 69

Query: 65  EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           +  ++V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct: 70  QVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Homo sapiens (taxid: 9606)

>sp|Q54QK1|FA96B_DICDI MIP18 family protein FAM96B OS=Dictyostelium discoideum GN=fam96B PE=3 SV=2

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 10/115 (8%)

Query: 7   NANPVVY---------EKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSL 57
           N NPV+Y         E  E    S+   + +E   ++ D+QE+FD VR I DPEHP +L
Sbjct: 4   NPNPVIYVDNENCKSFEDNENSFNSSRYSI-EEDQIDEFDEQEIFDLVRSITDPEHPLTL 62

Query: 58  EELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           E+L V+  + + ++ E SY+ + FTPTV HCSMA +IGL ++ KL RSLP RFKV
Sbjct: 63  EQLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKV 117

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UTL0|YIVG_SCHPO MIP18 family protein C144.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC144.16 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 73/133 (54%), Gaps = 21/133 (15%)

Query: 1   MVSGLINANPVVYEKKERRAR---------SASSCVNDEYAAEQ---------IDQQEVF 42
           M + L N NP V E  +  +R         S++     E  +EQ         ID QE++
Sbjct: 1   MSANLQNENPEVKELNQLPSRVEEEEDLLLSSTKQWLTEIESEQTNIKEERDPIDPQEIY 60

Query: 43  DHVRDIKDPEHPYSLEELKVITEDAIEVDDE---RSYVRVTFTPTVEHCSMATVIGLCLR 99
           D +  I DPEHP +L +L V+  + IEV D     SY+ V  TPT+ HCSM T+IGLC+R
Sbjct: 61  DLLAKINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYITVHITPTIPHCSMCTLIGLCIR 120

Query: 100 VKLMRSLPPRFKV 112
           V+L R LPPRF V
Sbjct: 121 VRLERCLPPRFHV 133

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 5/101 (4%)

Query: 17  ERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD---- 72
           E    S +    +E   + ID QE++D +  I DPEHP SL +L V+  + I+V D    
Sbjct: 85  ESEDESVAGGGKEEEEPDLIDAQEIYDLIAHISDPEHPLSLGQLSVVNLEDIDVHDSGNQ 144

Query: 73  -ERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
            E + V +  TPT+ HCS+AT+IGL +RV+L RSLPPRF++
Sbjct: 145 NEMAEVVIKITPTITHCSLATLIGLGIRVRLERSLPPRFRI 185

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9H5X1|FA96A_HUMAN MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 3/76 (3%)

Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+AT+IGL
Sbjct: 39  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 98

Query: 97  CLRVKLMRSLPPRFKV 112
           CLRVKL R LP + K+
Sbjct: 99  CLRVKLQRCLPFKHKL 114

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
224071405	159	predicted protein [Populus trichocarpa]	0.973	0.704	0.866	1e-49
358248458	159	uncharacterized protein LOC100802864 [Gl	0.973	0.704	0.830	9e-49
225440566	158	PREDICTED: MIP18 family protein At1g6831	0.965	0.702	0.839	1e-48
255647509	153	unknown [Glycine max]	0.973	0.732	0.821	5e-48
356497617	174	PREDICTED: MIP18 family protein At1g6831	0.973	0.643	0.740	5e-46
115460264	158	Os04g0595200 [Oryza sativa Japonica Grou	0.965	0.702	0.794	3e-45
449436858	161	PREDICTED: MIP18 family protein At1g6831	0.965	0.689	0.8	8e-45
194692926	158	unknown [Zea mays] gi|195609216|gb|ACG26	0.965	0.702	0.75	3e-44
218195476	159	hypothetical protein OsI_17224 [Oryza sa	0.965	0.698	0.778	9e-43
242077022	158	hypothetical protein SORBIDRAFT_06g02725	0.965	0.702	0.723	1e-42

>gi|224071405|ref|XP_002303444.1| predicted protein [Populus trichocarpa] gi|222840876|gb|EEE78423.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/112 (86%), Positives = 102/112 (91%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVSGLINANPV+YEKKERR RSA S  +DE+A E IDQ EVFDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSGLINANPVIYEKKERRVRSAPSVGDDEHAVEPIDQLEVFDHIRDIKDPEHPYSLEEL 60

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           KVITEDAIEVDD  SYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLP R+KV
Sbjct: 61  KVITEDAIEVDDNHSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPQRYKV 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248458|ref|NP_001239885.1| uncharacterized protein LOC100802864 [Glycine max] gi|255637195|gb|ACU18928.1| unknown [Glycine max]

 Score =  197 bits (500), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 103/112 (91%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVS LINANP++YEKKERR R+A S  +DEYA E IDQQEVFDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSELINANPIIYEKKERRPRTAPSAPHDEYAVELIDQQEVFDHIRDIKDPEHPYSLEEL 60

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           KVITE+A+EVDD+R+YVRV FTPTVEHCSMATVIGLCLRVKLMRSLP R+KV
Sbjct: 61  KVITEEAVEVDDQRNYVRVMFTPTVEHCSMATVIGLCLRVKLMRSLPSRYKV 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440566|ref|XP_002276610.1| PREDICTED: MIP18 family protein At1g68310-like [Vitis vinifera]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 104/112 (92%), Gaps = 1/112 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVSGLINANPV+Y+KKER+ R A  C +DEYA E +DQQE+FDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSGLINANPVIYQKKERQVRIAP-CDSDEYAVEPVDQQEIFDHIRDIKDPEHPYSLEEL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           KVITEDAIEVDD+RSYVRVTFTPTVEHCSMATVIGLCLRVKL+RSLP R+KV
Sbjct: 60  KVITEDAIEVDDKRSYVRVTFTPTVEHCSMATVIGLCLRVKLLRSLPSRYKV 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647509|gb|ACU24218.1| unknown [Glycine max]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 102/112 (91%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MVS LINANP++YEKKERR R+A S  +DEYA E IDQQEVFDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVSELINANPIIYEKKERRPRTAPSAPHDEYAVELIDQQEVFDHIRDIKDPEHPYSLEEL 60

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           KVITE+A+EVDD+R+YVR  FTPTVEHCSMATVIGLCLRVKLMRSLP R+KV
Sbjct: 61  KVITEEAVEVDDQRNYVRGMFTPTVEHCSMATVIGLCLRVKLMRSLPSRYKV 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497617|ref|XP_003517656.1| PREDICTED: MIP18 family protein At1g68310-like [Glycine max]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 104/127 (81%), Gaps = 15/127 (11%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFD---------------HV 45
           MV+ LINANP++YEKKERRA SA S  +DEYA E IDQQEVFD               H+
Sbjct: 1   MVTELINANPIIYEKKERRAPSAPSAPHDEYAVEPIDQQEVFDIVDNCNFNIFLTFTNHI 60

Query: 46  RDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRS 105
           RDIKDPEHPYSLEELKVITE+A+EVDD+R+YVRVTFTPTVEHCSMATVIGLCLRVKLMRS
Sbjct: 61  RDIKDPEHPYSLEELKVITEEAVEVDDQRNYVRVTFTPTVEHCSMATVIGLCLRVKLMRS 120

Query: 106 LPPRFKV 112
           LP R+KV
Sbjct: 121 LPSRYKV 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115460264|ref|NP_001053732.1| Os04g0595200 [Oryza sativa Japonica Group] gi|113565303|dbj|BAF15646.1| Os04g0595200 [Oryza sativa Japonica Group]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/112 (79%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           MV GLINANPVVYEKKERR+R A     DE AAE IDQ E+FDH+RDIKDPEHPYSLEEL
Sbjct: 1   MVVGLINANPVVYEKKERRSRQAPE-TTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEEL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
            V+TED++E++DE S+VRVTFTPTVE CSMATVIGLCLRVKLMRSLPPR+KV
Sbjct: 60  NVVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKV 111

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436858|ref|XP_004136209.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus] gi|449508040|ref|XP_004163200.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus]

 Score =  184 bits (466), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 101/115 (87%), Gaps = 4/115 (3%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVR---DIKDPEHPYSL 57
           MVSGLINANPVVY+KKERRAR+ + C +DEYA E IDQ E+FD +    DIKDPEHPYSL
Sbjct: 1   MVSGLINANPVVYQKKERRARN-TPCDSDEYAVESIDQLEIFDILSLFLDIKDPEHPYSL 59

Query: 58  EELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           EELKVITEDA+EVDD  SYVRVTFTPTVEHCSMAT+IGLCLRVKLMRSLP R+KV
Sbjct: 60  EELKVITEDAVEVDDGLSYVRVTFTPTVEHCSMATIIGLCLRVKLMRSLPSRYKV 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194692926|gb|ACF80547.1| unknown [Zea mays] gi|195609216|gb|ACG26438.1| hypothetical protein [Zea mays] gi|195643750|gb|ACG41343.1| hypothetical protein [Zea mays] gi|413919387|gb|AFW59319.1| hypothetical protein ZEAMMB73_301781 [Zea mays]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           M  GLINANP+++EKKERRAR A     DE AAE IDQ E+FDH+RDIKDPEHPYSLE+L
Sbjct: 1   MAMGLINANPIIHEKKERRARQAPETT-DENAAEPIDQLEIFDHIRDIKDPEHPYSLEQL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
            V+TED+IE++DE +YVRVTFTPTVEHCSMAT+IGLC+RVKL+RSLPPR+KV
Sbjct: 60  NVVTEDSIELNDESNYVRVTFTPTVEHCSMATIIGLCIRVKLVRSLPPRYKV 111

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195476|gb|EEC77903.1| hypothetical protein OsI_17224 [Oryza sativa Indica Group]

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 98/113 (86%), Gaps = 2/113 (1%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVR-DIKDPEHPYSLEE 59
           MV GLINANPVVYEKKERR+R A     DE AAE IDQ E+FD +  DIKDPEHPYSLEE
Sbjct: 1   MVVGLINANPVVYEKKERRSRQAPE-TTDENAAEAIDQLEIFDILSLDIKDPEHPYSLEE 59

Query: 60  LKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
           L V+TED++E++DE S+VRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPR+KV
Sbjct: 60  LNVVTEDSVEINDELSHVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRYKV 112

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077022|ref|XP_002448447.1| hypothetical protein SORBIDRAFT_06g027250 [Sorghum bicolor] gi|241939630|gb|EES12775.1| hypothetical protein SORBIDRAFT_06g027250 [Sorghum bicolor]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 98/112 (87%), Gaps = 1/112 (0%)

Query: 1   MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
           M  GLINANP+++EKKERR R A     DE AAE IDQ E+FDH+RDIKDPEHPYSLE+L
Sbjct: 1   MAMGLINANPIIHEKKERRIRPAPETT-DENAAEPIDQLEIFDHIRDIKDPEHPYSLEQL 59

Query: 61  KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
            V+TE++IE++DE ++VRVTFTPTVEHCSMAT+IGLC+RVKL+RSLPPR+KV
Sbjct: 60  NVVTENSIELNDESNHVRVTFTPTVEHCSMATIIGLCIRVKLVRSLPPRYKV 111

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2199362	159	AE7 "AS1/2 ENHANCER7" [Arabido	0.965	0.698	0.684	5.5e-38
TAIR|locus:4010713823	154	AT3G50845 "AT3G50845" [Arabido	0.930	0.694	0.517	6.4e-28
FB|FBgn0036107	156	CG7949 [Drosophila melanogaste	0.956	0.705	0.508	3.5e-27
UNIPROTKB|O62252	160	F45G2.10 "MIP18 family protein	0.930	0.668	0.527	7.3e-27
UNIPROTKB|E1BC22	163	FAM96B "Uncharacterized protei	0.956	0.674	0.522	2.5e-26
MGI|MGI:1915773	163	Fam96b "family with sequence s	0.930	0.656	0.527	5.2e-26
RGD|1585802	165	Fam96b "family with sequence s	0.930	0.648	0.527	5.2e-26
ZFIN|ZDB-GENE-040718-148	159	fam96b "family with sequence s	0.921	0.666	0.518	5.2e-26
UNIPROTKB|Q9Y3D0	163	FAM96B "Mitotic spindle-associ	0.930	0.656	0.509	1.1e-25
UNIPROTKB|E1BWV0	161	FAM96B "Uncharacterized protei	0.921	0.658	0.5	1.6e-24

TAIR|locus:2199362 AE7 "AS1/2 ENHANCER7" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 78/114 (68%), Positives = 96/114 (84%)

Query:     1 MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVR--DIKDPEHPYSLE 58
             MVSGLIN NP++Y KKERR R+ +S + DE   E IDQ E+FD +   +IKDPEHP +LE
Sbjct:     1 MVSGLINENPIIYPKKERRLRTDTS-ITDELTPEPIDQLEIFDILSSSNIKDPEHPNTLE 59

Query:    59 ELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             +L+V+TED++EVDDE SYVRVTFTPTVEHCSMATVIGLC+RVKL+RSLP R+K+
Sbjct:    60 DLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKI 113

GO:0005634 "nucleus" evidence=ISM

GO:0010209 "vacuolar sorting signal binding" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

TAIR|locus:4010713823 AT3G50845 "AT3G50845" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 58/112 (51%), Positives = 80/112 (71%)

Query:     1 MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
             M  GLINANPVV  KKE   R       D+Y  + +D  E++D+VRDI+DPEHPY+LE+L
Sbjct:     1 MTLGLINANPVVQAKKEGLVRR-----EDQYRDDGVDPLEIYDYVRDIRDPEHPYTLEQL 55

Query:    61 KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             +V++E+++ VDD+   + +TFTPT++HCSMA +IGLCLR KL   L   +KV
Sbjct:    56 RVVSEESVTVDDKLDRILITFTPTIQHCSMANIIGLCLRAKLKECLQLHYKV 107

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0036107 CG7949 [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 57/112 (50%), Positives = 82/112 (73%)

Query:     1 MVSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEEL 60
             M + + N NP VY++ + R  +A+    DE   +  D++E+FD +R+I DPEHP +LEEL
Sbjct:     1 MPTEIENINPNVYDRIKERVLTANE--EDENVPDPFDKREIFDLIRNINDPEHPLTLEEL 58

Query:    61 KVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
              V+ ED I ++D ++ V ++FTPT+ HCSMAT+IGL +RVKL+RSLPPRFKV
Sbjct:    59 HVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKV 110

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O62252 F45G2.10 "MIP18 family protein F45G2.10" [Caenorhabditis elegans (taxid:6239)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 58/110 (52%), Positives = 79/110 (71%)

Query:     5 LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
             L NANP +++ K R  R  +    DE   + ID  E+FD +RDI DPEHPY+LE+L V+ 
Sbjct:     6 LDNANPTLFDSKPRH-RPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQ 64

Query:    65 EDAIEV--DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             E+ I+V  D+E ++V+V FTPT+ HCSMAT+IGL +RVKL+RSL P+ KV
Sbjct:    65 EELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKV 114

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BC22 FAM96B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 59/113 (52%), Positives = 78/113 (69%)

Query:     1 MVSGLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEE 59
             M  GL+ NANP++YE+   R  SA     DE   + ID +E+FD +R I DPEHP +LEE
Sbjct:     7 MGGGLLENANPLIYERSGDRPVSAGE--EDEQVPDSIDAREIFDLIRSINDPEHPLTLEE 64

Query:    60 LKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             L V+ +  ++V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct:    65 LNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

GO:0097361 "CIA complex" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1915773 Fam96b "family with sequence similarity 96, member B" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 58/110 (52%), Positives = 77/110 (70%)

Query:     4 GLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKV 62
             GL+ NANP++YE+   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V
Sbjct:    10 GLLENANPLIYERSGERPVTAGE--EDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNV 67

Query:    63 ITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             + +  I+V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct:    68 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0071817 "MMXD complex" evidence=ISO

GO:0097361 "CIA complex" evidence=ISO

RGD|1585802 Fam96b "family with sequence similarity 96, member B" [Rattus norvegicus (taxid:10116)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 58/110 (52%), Positives = 77/110 (70%)

Query:     4 GLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKV 62
             GL+ NANP++YE+   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V
Sbjct:    12 GLLENANPLIYERSGERPVTAGE--EDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNV 69

Query:    63 ITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             + +  I+V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct:    70 VEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005819 "spindle" evidence=ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0071817 "MMXD complex" evidence=IEA;ISO

GO:0097361 "CIA complex" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040718-148 fam96b "family with sequence similarity 96, member B" [Danio rerio (taxid:7955)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 56/108 (51%), Positives = 78/108 (72%)

Query:     5 LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
             L NANP+++++   R  +++    DE  A+ ID +E+FD +R I DPEHP SLEEL V+ 
Sbjct:     7 LENANPLIFQRSGERLLTSTD--EDEDVADPIDVREIFDLIRSINDPEHPLSLEELNVVE 64

Query:    65 EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             +  + V+DE S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct:    65 QVRVNVNDEESTVSVEFTPTIPHCSMATLIGLSIKVKLLRSLPDRFKI 112

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y3D0 FAM96B "Mitotic spindle-associated MMXD complex subunit MIP18" [Homo sapiens (taxid:9606)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 56/110 (50%), Positives = 77/110 (70%)

Query:     4 GLI-NANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKV 62
             GL+ NANP++Y++   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V
Sbjct:    10 GLLENANPLIYQRSGERPVTAGE--EDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNV 67

Query:    63 ITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             + +  ++V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct:    68 VEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKM 117

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0071817 "MMXD complex" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0097361 "CIA complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E1BWV0 FAM96B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 54/108 (50%), Positives = 75/108 (69%)

Query:     5 LINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVIT 64
             L NANP++Y +   R  +A     D+   + ID +E+FD +R I DPEHP +LEEL V+ 
Sbjct:    10 LENANPLIYRRSGERPVTARE--EDDELPDSIDDREIFDLIRSINDPEHPLTLEELNVVE 67

Query:    65 EDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
             +  ++V+D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+
Sbjct:    68 QVRVKVNDAESTVAVEFTPTIPHCSMATLIGLSIKVKLIRSLPERFKM 115

GO:0007059 "chromosome segregation" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0097361 "CIA complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VTC4	U195A_DROME	No assigned EC number	0.5089	0.9565	0.7051	yes	no
Q9Y3D0	MIP18_HUMAN	No assigned EC number	0.5092	0.9217	0.6503	yes	no
Q9C9G6	U195A_ARATH	No assigned EC number	0.7232	0.9652	0.7070	yes	no
O62252	U195_CAEEL	No assigned EC number	0.5272	0.9304	0.6687	yes	no
Q9D187	MIP18_MOUSE	No assigned EC number	0.5277	0.9217	0.6503	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
COG5133	181	COG5133, COG5133, Uncharacterized conserved protei	7e-29

>gnl|CDD|227462 COG5133, COG5133, Uncharacterized conserved protein [Function unknown]

 Score =  102 bits (256), Expect = 7e-29
 Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 5/103 (4%)

Query: 15  KKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD-- 72
            +ER    + + V      + IDQQE++D + DI+DPEHP +LE+L V++ + I V D  
Sbjct: 33  LEERHPIESENGVLQNEEPDLIDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGI 92

Query: 73  ---ERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV 112
                  V+V  TPT+ HCSMAT+IGLC+RV+L R LPPRF V
Sbjct: 93  APNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHV 135

Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG3381	161	consensus Uncharacterized conserved protein [Funct	99.89
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	99.88
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	99.79
COG5133	181	Uncharacterized conserved protein [Function unknow	99.75
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	99.71
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	99.5
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	99.44
PRK11670	369	antiporter inner membrane protein; Provisional	99.29
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	94.11
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	92.84
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	91.43
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	90.08
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	89.56

>KOG3381 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=1.3e-23  Score=152.93  Aligned_cols=112  Identities=58%  Similarity=1.013  Sum_probs=98.1

Q ss_pred             CCCCCCCCceEeecccccccccCCCCCCchhcCcCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeC---CC--cE
Q 033611            2 VSGLINANPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD---ER--SY   76 (115)
Q Consensus         2 ~~~~~n~np~~~~~~~~~~~~~~~~~~~~~~~~~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~---~~--~~   76 (115)
                      ++.+.|+||.||...+.+.+.+ .+..|+...+..+.+.+++.+|.|.|||+|.++.+|++|+.+.|+|.+   +.  ..
T Consensus         1 ~s~l~N~np~v~~~~~~~~r~~-~s~~d~~~~~~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~   79 (161)
T KOG3381|consen    1 GSGLQNENPLVYPTRSRERRVT-ASEEDELLPDSEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESY   79 (161)
T ss_pred             CCccccCCcccccccccccccc-ccccccccCcchhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceE
Confidence            3669999999999877766653 334566666888999999999999999999999999999999999874   22  37


Q ss_pred             EEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           77 VRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        77 V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      |+|.||||.|||+|+..|+.+||-+|.+++|..++|+|
T Consensus        80 V~i~ftPTipHCSmaTlIGLcIrVkl~RsLp~rfkvdV  117 (161)
T KOG3381|consen   80 VRITFTPTIPHCSMATLIGLCIRVKLLRSLPPRFKVDV  117 (161)
T ss_pred             EEEEeccCCCcchHHhhhhheeeeeeeecCCCceeEEE
Confidence            99999999999999999999999999999999999886

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=142.03  Aligned_cols=79  Identities=24%  Similarity=0.433  Sum_probs=69.4

Q ss_pred             cCcCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeE
Q 033611           33 AEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKV  112 (115)
Q Consensus        33 ~~~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V  112 (115)
                      +.+.++++|+++|++|+|||+|++|++|||||+  |.+++.++.++|+||||+||||++..|..++++++ +.+++...+
T Consensus         9 ~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~--v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al-~~~~~v~~v   85 (111)
T COG2151           9 AIKVTLEDILEALKTVIDPEIGIDIVDLGLVYE--VDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAAL-EEIPGVEDV   85 (111)
T ss_pred             hhhhhHHHHHHHhhcCCCcccceeeEeeccEEE--EEEecCCceEEEEEecCCCCCCccHHHHHHHHHHH-HhcCCcceE
Confidence            345689999999999999999999999999999  99987223799999999999999999999999999 778875544


Q ss_pred             Ee
Q 033611          113 RR  114 (115)
Q Consensus       113 ~v  114 (115)
                      +|
T Consensus        86 ~V   87 (111)
T COG2151          86 EV   87 (111)
T ss_pred             EE
Confidence            43

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=99.79  E-value=5.9e-19  Score=112.99  Aligned_cols=72  Identities=26%  Similarity=0.412  Sum_probs=64.1

Q ss_pred             HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      +++|+++|++|+||++|.||++||+|++  |.++++  +|+|.|++++|+||+...|..+++.+| ++++++.+|+|
T Consensus         1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~--i~i~~~--~V~v~l~l~~~~~~~~~~l~~~i~~~l-~~l~gv~~V~V   72 (72)
T PF01883_consen    1 KQAVRDALKQVKDPELGKDIVELGMVRD--ISIEGG--KVSVSLELPTPACPAAEPLREEIREAL-KALPGVKSVKV   72 (72)
T ss_dssp             HHHHHHHHTT-BETTTSSBTTTTTSEEE--EEECTC--EEEEEE--SSTTHTTHHHHHHHHHHHH-HTSTT-SEEEE
T ss_pred             CHHHHHHHhCCCCCCCCCCHHHcCCeeE--EEEECC--EEEEEEEECCCCchHHHHHHHHHHHHH-HhCCCCceEeC
Confidence            5899999999999999999999999999  999763  899999999999999999999999999 69999988876

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>COG5133 Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.8e-18  Score=126.18  Aligned_cols=113  Identities=46%  Similarity=0.794  Sum_probs=94.4

Q ss_pred             CCCCCCCCceEeecccccccccC----------------CCCC---CchhcCcCCHHHHHHHhcCCCCCCCCCCceeccc
Q 033611            2 VSGLINANPVVYEKKERRARSAS----------------SCVN---DEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKV   62 (115)
Q Consensus         2 ~~~~~n~np~~~~~~~~~~~~~~----------------~~~~---~~~~~~~it~~~I~~aL~~V~DPEi~~~IvdLGl   62 (115)
                      |+.+-|.||.|.+-++...+..+                ++.+   -+.+.+.++.++||+.++.|.|||+|+++..||+
T Consensus         1 ~a~~~nenpdi~e~NqlP~r~e~~~dlll~ss~e~~~piese~~~~~~ee~d~id~qeiydLia~I~DPEHPltL~QLsV   80 (181)
T COG5133           1 MAEFLNENPDIKEMNQLPFRAESEEDLLLGSSLEERHPIESENGVLQNEEPDLIDQQEIYDLIADIRDPEHPLTLEQLSV   80 (181)
T ss_pred             CccccccCcchhhhhcCCccccchhhhhcccchhhcCcccccccccccCCCCCcCHHHHHHHHHhcCCCCCCccHhhcce
Confidence            56789999999998888554211                1111   1345567999999999999999999999999999


Q ss_pred             eeeccEEEeCCC-----cEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           63 ITEDAIEVDDER-----SYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        63 I~~~~I~i~~~~-----~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      |.-++|.+.++.     .-|.|.+|||.|+|+|+..|+..||.+|.+.+|+.+.|+|
T Consensus        81 V~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~lpprF~v~v  137 (181)
T COG5133          81 VSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRFHVQV  137 (181)
T ss_pred             eeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeeehhcCCCceeEEE
Confidence            999999986543     3589999999999999999999999999999999988876

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=99.71  E-value=5.9e-17  Score=120.85  Aligned_cols=80  Identities=23%  Similarity=0.361  Sum_probs=70.2

Q ss_pred             hcCcCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeC---CCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCC
Q 033611           32 AAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD---ERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPP  108 (115)
Q Consensus        32 ~~~~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~---~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~  108 (115)
                      ..+..++++|+++|++|+|||++.||++||+||+  +.+++   ++.+|+|.|++|+|+|++...|..+++.+| +.+++
T Consensus        69 ~~~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~--I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL-~~l~g  145 (174)
T TIGR03406        69 ADGEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYG--CRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKV-LAVPN  145 (174)
T ss_pred             ccccccHHHHHHHHcCCCCCCCCCChHHcCCeEE--EEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCC
Confidence            3456788999999999999999999999999999  98876   323799999999999999999999999999 77888


Q ss_pred             ceeEEe
Q 033611          109 RFKVRR  114 (115)
Q Consensus       109 ~~~V~v  114 (115)
                      ..+|+|
T Consensus       146 V~~V~V  151 (174)
T TIGR03406       146 VDEVEV  151 (174)
T ss_pred             ceeEEE
Confidence            665554

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=99.50  E-value=2.9e-13  Score=91.36  Aligned_cols=73  Identities=27%  Similarity=0.442  Sum_probs=65.0

Q ss_pred             HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      +++|+++|++++||+++.+|+++|+|++  +.++++ +.|+|.+++++|+||....+...++.+| ..+++..+|+|
T Consensus         3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~--i~v~~~-~~v~i~l~l~~p~~~~~~~l~~~i~~al-~~l~gv~~v~v   75 (99)
T TIGR02945         3 KDAVIEALKTVYDPEIPVNIYELGLIYD--IDVDDD-GHVDIQMTLTAPNCPVAGSMPGEVENAV-RAVPGVGSVTV   75 (99)
T ss_pred             HHHHHHHHcCCCCCCCCCCeecCCCeeE--EEECCC-CeEEEEEEECCCCCChHHHHHHHHHHHH-HhCCCCceEEE
Confidence            4789999999999999999999999999  998742 3799999999999999999999999999 67887655554

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=99.44  E-value=4.8e-13  Score=97.38  Aligned_cols=53  Identities=36%  Similarity=0.547  Sum_probs=49.5

Q ss_pred             CCCCCCC-CCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Q 033611           48 IKDPEHP-YSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMR  104 (115)
Q Consensus        48 V~DPEi~-~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~  104 (115)
                      |.|||+| +||++||+|++  |+++++  .|+|+|+||++|||+.+.|..+++++|.+
T Consensus         1 v~DPEi~~~sIvdLG~Vr~--V~v~gd--~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~   54 (146)
T TIGR02159         1 VPDPEIPVVSVTDLGMVRE--VDVDGG--GVVVKFTPTYSGCPALEVIRQDIRDAVRA   54 (146)
T ss_pred             CcCCCCCCCCchhcCCeeE--EEEECC--EEEEEEEeCCCCCchHHHHHHHHHHHHHh
Confidence            7899999 89999999999  999764  79999999999999999999999999944

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.29  E-value=2e-11  Score=99.70  Aligned_cols=76  Identities=11%  Similarity=0.093  Sum_probs=68.3

Q ss_pred             CcCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEE
Q 033611           34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVR  113 (115)
Q Consensus        34 ~~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~  113 (115)
                      ..+++++|+++|++|.||+++.+|+++|+|++  +.++++  ++.|.+++|+++||+...+..+++++| +.+++..+++
T Consensus        10 ~~~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   84 (369)
T PRK11670         10 PEALRAMVAGTLANFQHPTLKHNLTTLKALHH--VALLDD--TLHIELVMPFVWNSAFEELKEQCSAEL-LRITGAKAID   84 (369)
T ss_pred             ccchHHHHHHHHhcCCCCCCCCChhhhCCeeE--EEEeCC--EEEEEEEECCCCchHHHHHHHHHHHHH-HhcCCCceEE
Confidence            34677999999999999999999999999999  999754  799999999999999999999999999 7788866555


Q ss_pred             e
Q 033611          114 R  114 (115)
Q Consensus       114 v  114 (115)
                      |
T Consensus        85 ~   85 (369)
T PRK11670         85 W   85 (369)
T ss_pred             E
Confidence            4

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=94.11  E-value=0.5  Score=29.93  Aligned_cols=44  Identities=23%  Similarity=0.364  Sum_probs=35.6

Q ss_pred             EEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEE
Q 033611           68 IEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVR  113 (115)
Q Consensus        68 I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~  113 (115)
                      +.++++  .|+|.|+=...|||++.. +...|+++|++.+|...+|.
T Consensus        22 v~v~~~--~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~   66 (68)
T PF01106_consen   22 VDVDDG--VVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVV   66 (68)
T ss_dssp             EEEETT--EEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEE
T ss_pred             EEecCC--EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEE
Confidence            456654  899999999999999854 55999999988999887775

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=92.84  E-value=0.67  Score=34.99  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHH-HHHHHHHHHHHHhCCCceeEEe
Q 033611           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT-VIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~-~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      .++|.++|.+-.-|-+-.   +=|=|.-  +.++++ +.|.|.|+=...|||++. .+...|+..|++.+|.+.+|.-
T Consensus       107 ~~~i~~~l~~~irP~l~~---dGGdiel--v~v~~~-~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~  178 (190)
T TIGR03341       107 EERINYVLQSEINPQLAS---HGGKVTL--VEITDD-GVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRD  178 (190)
T ss_pred             HHHHHHHHHhccCHHHHh---cCCceEE--EEEcCC-CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEE
Confidence            455666665434455443   3444554  556544 378999999999999986 4667999999888898777653

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=91.43  E-value=1.2  Score=30.24  Aligned_cols=73  Identities=15%  Similarity=0.244  Sum_probs=46.4

Q ss_pred             HHHHHhcCCCCCCCC-CCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHH-HHHHHHHHHHHHhCCCceeEEe
Q 033611           40 EVFDHVRDIKDPEHP-YSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT-VIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        40 ~I~~aL~~V~DPEi~-~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~-~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      ++++++..+.|-++. .=.-+=|=|.-  +.++...+.|.+.+-=...|||+.. .++..|++.|+..+|+..+|..
T Consensus         9 ~~~e~v~~~l~~~irP~l~~dGGdve~--~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~   83 (93)
T COG0694           9 ELLERVEEVLDEKIRPQLAMDGGDVEL--VGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQ   83 (93)
T ss_pred             HHHHHHHHHHHhccCcceeccCCeEEE--EEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEE
Confidence            334444444442222 22334454444  5565423379999999999999986 4666799999888888777754

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=90.08  E-value=1.4  Score=33.43  Aligned_cols=71  Identities=18%  Similarity=0.264  Sum_probs=49.6

Q ss_pred             CHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCC-CceeEE
Q 033611           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLP-PRFKVR  113 (115)
Q Consensus        37 t~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~-~~~~V~  113 (115)
                      ..++|.++|.+-.-|-+-.+   -|=|.-  +.++++ +.|.|.|+=...|||++.. +...|+..|++.+| ...+|.
T Consensus       107 ~~~~i~~~l~~~irP~l~~d---GGdiel--v~v~~~-~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~  179 (192)
T PRK11190        107 LMERVEYVLQSQINPQLAGH---GGRVSL--MEITED-GYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVR  179 (192)
T ss_pred             HHHHHHHHHHhccChhHHhc---CCcEEE--EEEcCC-CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEE
Confidence            34566777765555766544   444444  556544 3689999999999999864 66699999988888 665554

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=89.56  E-value=2.2  Score=34.23  Aligned_cols=69  Identities=22%  Similarity=0.172  Sum_probs=49.4

Q ss_pred             HHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEeC
Q 033611           39 QEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV  115 (115)
Q Consensus        39 ~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v~  115 (115)
                      ++|.++| +-.-|-+-.+   =|=|.-  +.|++  +.|+|.|+=.-.|||+...--..|++.|+..+|+..+|.-|
T Consensus       222 ~~v~~~l-~~irP~l~~d---GGdv~l--v~v~~--~~v~v~l~GaC~gC~~s~~Tl~~Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       222 QLIQKVL-EEVRPVLQAD---GGDVEL--YDVDG--KIVYVVLTGACSGCSMSTMTLKGIQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             HHHHHHH-HHhCchHhhc---CCcEEE--EEEeC--CEEEEEEeeCCCCCcchHHHHHHHHHHHHHhCCCceEEEeC
Confidence            4456666 3345655544   454554  55654  37999999999999998766666999998889988887654

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
3ux3_A	130	Crystal Structure Of Domain-Swapped Fam96a Minor Di		3e-18
3ux2_A	130	Crystal Structure Of Domain-Swapped Fam96a Major Di		3e-18

>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer Length = 130

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 3/76 (3%)
Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+AT+IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 97  CLRVKLMRSLPPRFKV 112
           CLRVKL R LP + K+
Sbjct: 72  CLRVKLQRCLPFKHKL 87

>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer Length = 130

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 3/76 (3%)
Query: 40  EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
           EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+AT+IGL
Sbjct: 12  EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 97  CLRVKLMRSLPPRFKV 112
           CLRVKL R LP + K+
Sbjct: 72  CLRVKLQRCLPFKHKL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	2e-35

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A Length = 130

 Score =  117 bits (294), Expect = 2e-35
 Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 3/82 (3%)

Query: 34  EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSM 90
            +    EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+
Sbjct: 6   MEEKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSL 65

Query: 91  ATVIGLCLRVKLMRSLPPRFKV 112
           AT+IGLCLRVKL R LP + K+
Sbjct: 66  ATLIGLCLRVKLQRCLPFKHKL 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	99.89
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	99.85
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	99.84
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	99.82
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	95.47
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	94.07
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	89.99
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	89.94
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	88.15

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=99.89  E-value=5e-24  Score=151.44  Aligned_cols=78  Identities=54%  Similarity=0.925  Sum_probs=70.3

Q ss_pred             CHHHHHHHhcCCCCCCCCCCceeccceeeccEEE---eCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEE
Q 033611           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVR  113 (115)
Q Consensus        37 t~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i---~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~  113 (115)
                      ++++||++|++|+|||+|++|++||+||+++|.+   +++++.|.|+||||+|||||++.|+.+|+.+|++++|+.++|+
T Consensus         9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~   88 (130)
T 3ux2_A            9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE   88 (130)
T ss_dssp             HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred             cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence            5789999999999999999999999999976754   3344579999999999999999999999999988899988887


Q ss_pred             e
Q 033611          114 R  114 (115)
Q Consensus       114 v  114 (115)
                      +
T Consensus        89 v   89 (130)
T 3ux2_A           89 I   89 (130)
T ss_dssp             C
T ss_pred             E
Confidence            6

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=99.85  E-value=4.7e-21  Score=129.72  Aligned_cols=76  Identities=20%  Similarity=0.340  Sum_probs=69.4

Q ss_pred             cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      |+++++|+++|++|+|||+|.||++||+||+  |.+++++ +|+|.|++|+|+||+...|..+++++| ++++|..+|+|
T Consensus         5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~~-~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~v~V   80 (103)
T 1uwd_A            5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYD--IQIDDQN-NVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVEV   80 (103)
T ss_dssp             CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCC--EEECTTC-EEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEEE
T ss_pred             cchHHHHHHHHcCCCCCCCCcChhhcCCeeE--EEEcCCC-EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCcceEEE
Confidence            5789999999999999999999999999999  9997543 799999999999999999999999999 78888766654

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=99.84  E-value=2e-21  Score=133.05  Aligned_cols=77  Identities=18%  Similarity=0.297  Sum_probs=69.2

Q ss_pred             cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      +.++++|+++|++|+|||+|+||++||+||+  |.+++++ +|+|+|+||+|+||+...|..+++.+|+++++|..+|+|
T Consensus         7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~--I~v~~~~-~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V   83 (108)
T 3lno_A            7 EAFENKLYANLEAVIDPELGVDIVNLGLVYD--VTADENN-NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV   83 (108)
T ss_dssp             HHHHHHHHHHGGGCEETTTTEEHHHHTCEEE--EEECTTC-CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred             hhhHHHHHHHHcCCCCCCCCCCHHHcCCceE--EEECCCC-eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence            4688999999999999999999999999999  9997543 799999999999999999999999999667888766554

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=99.82  E-value=3.1e-20  Score=125.82  Aligned_cols=73  Identities=22%  Similarity=0.321  Sum_probs=67.3

Q ss_pred             CHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        37 t~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      ++++|+++|++|+|||+|.+|++||+||+  |.++++  .|+|+|++|+|+||+...|..+++++| ++++|..+|+|
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~--~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~V~V   79 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYD--LVVEPP--RAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEV   79 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEE--EEEETT--EEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEE
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEE--EEEECC--EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCceeEEE
Confidence            57899999999999999999999999999  999754  799999999999999999999999999 78888766654

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=95.47  E-value=0.058  Score=35.27  Aligned_cols=69  Identities=16%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEEe
Q 033611           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      .+.|.++|.+ .=|-+-.   +=|=|.-  +.+++  +.|+|.|.=...|||++.. ++..|+++|++.+|+...|..
T Consensus         9 ~~~I~~~L~~-IRP~L~~---dGGdvel--v~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~   78 (88)
T 1xhj_A            9 FDQVAEVIER-LRPFLLR---DGGDCTL--VDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ   78 (88)
T ss_dssp             HHHHHHHHHH-HHHHHHH---HSCEEEE--EECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             HHHHHHHHHH-hcHHHHh---cCCeEEE--EEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEe
Confidence            4455555554 3343322   2233333  44442  4799999999999999976 777999999888998777654

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=94.07  E-value=0.091  Score=34.57  Aligned_cols=71  Identities=13%  Similarity=0.133  Sum_probs=46.9

Q ss_pred             HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEEeC
Q 033611           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVRRV  115 (115)
Q Consensus        38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~v~  115 (115)
                      .+.|.++|.+-.=|-+-.   +=|=|.-  +.+++  +.|+|.|.=...|||++.. ++..|+++|++.+|...+|..|
T Consensus        15 ~~~I~~~L~~~IRP~L~~---dGGdvel--v~v~~--g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v   86 (92)
T 1veh_A           15 VAMIKELLDTRIRPTVQE---DGGDVIY--RGFED--GIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV   86 (92)
T ss_dssp             HHHHHHHHHHTTHHHHHH---HSCCCCE--EEEET--TEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred             HHHHHHHHHHHhhHHHHh---cCCeEEE--EEEeC--CEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEc
Confidence            344556665433344322   2233333  44543  3799999888999999976 7779999998889988777643

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=89.99  E-value=1.1  Score=31.74  Aligned_cols=71  Identities=14%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      .++++.|-++|..++ |-+..+  +=|=|.-  +.+++  +.|+|.++=...+|   ..++..|+++|++.+|+..+|..
T Consensus        84 ~L~~~~v~~~L~~iR-P~L~~~--dGGdvel--v~v~~--~~v~v~l~Gac~~~---~Tlk~~Ie~~l~e~vP~i~~V~~  153 (154)
T 2z51_A           84 ELNEENIEKVLEEIR-PYLIGT--ADGSLDL--VEIED--PIVKIRITGPAAGV---MTVRVAVTQKLREKIPSIAAVQL  153 (154)
T ss_dssp             CSSHHHHHHHHHHHG-GGCCGG--GCCEEEE--EEEET--TEEEEEEESGGGGC---HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHH-HHhhhc--CCCCeEE--EEEEC--CEEEEEEecCCccc---HhHHHHHHHHHHHHCCCccEEEe
Confidence            578888888887643 555321  2344555  56654  37888888765555   67888999999999999988875


Q ss_pred             C
Q 033611          115 V  115 (115)
Q Consensus       115 ~  115 (115)
                      +
T Consensus       154 ~  154 (154)
T 2z51_A          154 I  154 (154)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=89.94  E-value=0.35  Score=30.47  Aligned_cols=70  Identities=14%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             cCCHHHHHHHhcCCCCCCCCCCc-eeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEE
Q 033611           35 QIDQQEVFDHVRDIKDPEHPYSL-EELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVR  113 (115)
Q Consensus        35 ~it~~~I~~aL~~V~DPEi~~~I-vdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~  113 (115)
                      .++.+.|.++|.+ .-|-+..+= -+.-+     +.+++  +.|+|.++=...+|   ..++..|+++|++.+|+..+|.
T Consensus         3 ~~~~~~V~~~L~~-iRP~L~~dGGGdvel-----v~v~~--g~V~v~l~GaC~gc---~Tlk~gIe~~L~~~vpei~~V~   71 (74)
T 1th5_A            3 ELNEENVEKVLNE-IRPYLAGTGGGGLQF-----LMIKG--PIVKVRLTGPAAVV---RTVRIAVSKKLREKIPSIQIVQ   71 (74)
T ss_dssp             CCSHHHHHHHHTT-THHHHTTTTCCCCCC-----CEEET--TEEEECCCSSSSSS---SSHHHHHHHHHHHHCTTCSEEE
T ss_pred             hHHHHHHHHHHHH-HhHHHHhcCCCcEEE-----EEEeC--CEEEEEEecCCcch---HHHHHHHHHHHHHHCCCCcEEE
Confidence            3578889999987 566655443 33333     33443  37888888777788   5888999999988999988876


Q ss_pred             eC
Q 033611          114 RV  115 (115)
Q Consensus       114 v~  115 (115)
                      .|
T Consensus        72 ~v   73 (74)
T 1th5_A           72 LL   73 (74)
T ss_dssp             EC
T ss_pred             eC
Confidence            54

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=88.15  E-value=0.84  Score=32.45  Aligned_cols=72  Identities=18%  Similarity=0.283  Sum_probs=50.4

Q ss_pred             cCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEE
Q 033611           35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVR  113 (115)
Q Consensus        35 ~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~  113 (115)
                      +++.++|.++|.. .=|-+-.+=   |=|.-  +.+++  +.|+|.+.=...|||++.. +...|+++|++.+|...+|.
T Consensus         3 ~~~~e~v~~~L~~-iRP~l~~dG---Gdvel--v~v~~--~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~   74 (154)
T 2z51_A            3 PLTEENVESVLDE-IRPYLMSDG---GNVAL--HEIDG--NVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVE   74 (154)
T ss_dssp             CSCHHHHHHHHHH-HHHHHHHTT---EEEEE--EEEET--TEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cchHHHHHHHHHH-hChHHHhcC---CeEEE--EEEEC--CEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEE
Confidence            4677778777765 344443332   33333  44553  3799999999999999764 77799999988899877775


Q ss_pred             e
Q 033611          114 R  114 (115)
Q Consensus       114 v  114 (115)
                      -
T Consensus        75 ~   75 (154)
T 2z51_A           75 A   75 (154)
T ss_dssp             E
T ss_pred             E
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1uwda_	102	d.52.8.2 (A:) Hypothetical protein TM0487 {Thermot	1e-04
d2cu6a1	91	d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Th	0.002

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.0 bits (83), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 33 AEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT 92
          ++++ +++V + ++++ D E    +  L ++ +      D+++ V+V  T T   C +A 
Sbjct: 2  SKKVTKEDVLNALKNVIDFELGLDVVSLGLVYD---IQIDDQNNVKVLMTMTTPMCPLAG 58

Query: 93 VI 94
          +I
Sbjct: 59 MI 60

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

 Score = 32.9 bits (75), Expect = 0.002
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVI 94
          + + +  +  + DPE    +  L +I +  +E         V  T T   C +   +
Sbjct: 3  EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRA----YVRMTLTTPGCPLHDSL 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	99.89
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	99.86
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	94.85
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	94.76
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	94.52

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2e-23  Score=141.07  Aligned_cols=77  Identities=19%  Similarity=0.341  Sum_probs=70.6

Q ss_pred             CcCCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEE
Q 033611           34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVR  113 (115)
Q Consensus        34 ~~it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~  113 (115)
                      .++|+++|+++|++|+|||+|+|||+|||||+  |.|+++| .|.|.|++|+|+||+...|..++++++ ++++|..+|+
T Consensus         3 ~~vt~~~V~~aL~~V~DPe~~~dIV~LGlV~~--i~I~~~g-~V~v~~~lt~~~Cp~~~~i~~~i~~al-~~~~gV~~v~   78 (102)
T d1uwda_           3 KKVTKEDVLNALKNVIDFELGLDVVSLGLVYD--IQIDDQN-NVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVE   78 (102)
T ss_dssp             SCCCHHHHHHHHTTCBCTTTSSBTTTTTCCCC--EEECTTC-EEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEE
T ss_pred             cccCHHHHHHHHhCCCCCCCCcceeeccceee--EEecccc-ceEEEEecCCCCCchHHHHHHHHHHHH-HcCCCCceEE
Confidence            46899999999999999999999999999999  9997654 799999999999999999999999999 7899876665


Q ss_pred             e
Q 033611          114 R  114 (115)
Q Consensus       114 v  114 (115)
                      |
T Consensus        79 V   79 (102)
T d1uwda_          79 V   79 (102)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.9e-22  Score=133.35  Aligned_cols=73  Identities=22%  Similarity=0.321  Sum_probs=67.4

Q ss_pred             CHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEe
Q 033611           37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        37 t~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      .+++|+++|++|+|||+|+||++|||||+  |.++++  +|.|+|+||+++||++..|..+++++| ++++|..+|+|
T Consensus         2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~--i~i~~~--~v~v~l~lt~~~cp~~~~i~~~i~~al-~~l~gv~~V~V   74 (91)
T d2cu6a1           2 LEAQAWALLEAVYDPELGLDVVNLGLIYD--LVVEPP--RAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEV   74 (91)
T ss_dssp             HHHHHHHHHTTCEETTTTEETTTTTCEEE--EEEETT--EEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEE
T ss_pred             hHHHHHHHHhcCCCCCCCcChhhccceeE--EEEecc--ccEEEEEcCCCCCcHHHHHHHHHHHHH-HcCCCCceEEE
Confidence            37899999999999999999999999999  999854  899999999999999999999999999 78998766655

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=94.85  E-value=0.054  Score=33.80  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             eccceeeccEEEeCCCcEEEEEEEeCCCCCChHHH-HHHHHHHHHHHhCCCceeEEe
Q 033611           59 ELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVRR  114 (115)
Q Consensus        59 dLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~-I~~~v~~~L~~~~~~~~~V~v  114 (115)
                      +=|=|.-  +.+++  +.|+|.|+=...|||++.. +...|++.|++.+|+...|.-
T Consensus        26 dGGdvel--v~v~~--g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~   78 (88)
T d1xhja_          26 DGGDCTL--VDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ   78 (88)
T ss_dssp             HSCEEEE--EECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             CCCcEEE--EeccC--CEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEE
Confidence            3444444  45543  4799999999999999855 668999999889998777653

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.76  E-value=0.023  Score=34.41  Aligned_cols=70  Identities=14%  Similarity=0.198  Sum_probs=51.0

Q ss_pred             CCHHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChHHHHHHHHHHHHHHhCCCceeEEeC
Q 033611           36 IDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVRRV  115 (115)
Q Consensus        36 it~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~~~I~~~v~~~L~~~~~~~~~V~v~  115 (115)
                      ++++.|..+|..|+ |-+..  -+=|-|.-  +.+++  +.|+|.|+=...||+   .+...|++.|++.+|....|+++
T Consensus         3 l~ee~V~~vL~eir-P~l~a--~dGGdvel--v~i~~--~~v~v~l~GaC~gC~---Tl~~gIe~~L~~~iPei~~V~~v   72 (73)
T d1th5a1           3 LNEENVEKVLNEIR-PYLAG--TGGGGLQF--LMIKG--PIVKVRLTGPAAVVR---TVRIAVSKKLREKIPSIQIVQLL   72 (73)
T ss_dssp             CSHHHHHHHHTTTH-HHHTT--TTCCCCCC--CEEET--TEEEECCCSSSSSSS---SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             CCHHHHHHHHHHhc-ccccc--cCCceEEE--EEecC--CEEEEEecCCCcccc---hHHHHHHHHHHHHCCCccEEEec
Confidence            67888988886642 32210  02355555  56654  379999999999994   78888999999999998888875

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=0.03  Score=35.31  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             HHHHHHHhcCCCCCCCCCCceeccceeeccEEEeCCCcEEEEEEEeCCCCCChH-HHHHHHHHHHHHHhCCCceeEE
Q 033611           38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMA-TVIGLCLRVKLMRSLPPRFKVR  113 (115)
Q Consensus        38 ~~~I~~aL~~V~DPEi~~~IvdLGlI~~~~I~i~~~~~~V~V~mtlT~p~Cp~~-~~I~~~v~~~L~~~~~~~~~V~  113 (115)
                      .+.|.++|..-.-|-+.   -+-|-|.-  +.+++  +.|+|.|.=...|||++ ..+...|+..|+..+|.+..|.
T Consensus        15 ~~~I~~vL~~~IrP~l~---~dGGdv~l--v~v~~--g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~   84 (92)
T d1veha_          15 VAMIKELLDTRIRPTVQ---EDGGDVIY--RGFED--GIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVE   84 (92)
T ss_dssp             HHHHHHHHHHTTHHHHH---HHSCCCCE--EEEET--TEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEE
T ss_pred             HHHHHHHHHHhcChHHH---HcCCceEE--EEeeC--CeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEE
Confidence            44566666555556665   34455555  55664  37999999999999999 5678999999988899876664