Citrus Sinensis ID: 033625

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Secondary Structure (PSIPRED)
cccEEEcccccccHHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccEEEEcHHHHccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrpgvalkpgtsveevyplveganPVEMVLVMtvepgfggqkfmpEMMDKVRSLrnrypsldievdgglgpsTIAEAASAGAncivagssvfgapepaHVISLMRKSVEDAQKNS
Flexible Loop (DISEMBL)
mrpgvalkpgtsveevyplVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Low Complexity Region (SEG)
MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Disordered region (IsUnstruct)
*************EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP*****V**LRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP****V***************
Disordered Region (DISOPRED)
MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM***********
Disordered Region (DISEMBL)
MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK*********
Disordered Region (DISPRO)
MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q9SE42	228	Ribulose-phosphate 3-epim	yes	no	1.0	0.504	0.8	4e-48
Q96AT9	228	Ribulose-phosphate 3-epim	yes	no	0.973	0.491	0.577	4e-30
Q5R5Y2	228	Ribulose-phosphate 3-epim	yes	no	0.973	0.491	0.577	4e-30
Q8VEE0	228	Ribulose-phosphate 3-epim	yes	no	0.973	0.491	0.560	1e-29
P46969	238	Ribulose-phosphate 3-epim	yes	no	0.913	0.441	0.574	5e-28
Q755M2	239	Ribulose-phosphate 3-epim	yes	no	0.930	0.447	0.572	6e-28
Q6FL81	246	Ribulose-phosphate 3-epim	yes	no	0.956	0.447	0.548	8e-28
O14105	228	Ribulose-phosphate 3-epim	yes	no	0.973	0.491	0.565	4e-27
Q9L0Z5	228	Ribulose-phosphate 3-epim	yes	no	0.930	0.469	0.421	7e-17
P65760	229	Ribulose-phosphate 3-epim	yes	no	0.895	0.449	0.418	7e-17

>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 102/115 (88%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGV+L+PGT VEEV+PLVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 114 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 173

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDIEVDGGLGPSTI  AASAGANCIVAGSS+FGA EP  VIS +RKSVE +Q  S
Sbjct: 174 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1

>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 86/116 (74%), Gaps = 4/116 (3%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
           LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 86/116 (74%), Gaps = 4/116 (3%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
           LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 86/116 (74%), Gaps = 4/116 (3%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ G+A+KPGT+VE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++P+
Sbjct: 113 MKVGLAIKPGTTVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPT 169

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
           LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 170 LDIEVDGGVGPDTVQKCAEAGANMIVSGSAIMRSDDPRAVINLLRNVCSEAAQKRS 225

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 81/108 (75%), Gaps = 3/108 (2%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           ++   A+KPGTSV+ ++ L   A  ++M LVMTVEPGFGGQKFM +MM KV +LR ++P 
Sbjct: 123 IKAACAIKPGTSVDVLFEL---APHLDMALVMTVEPGFGGQKFMEDMMPKVETLRAKFPH 179

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
           L+I+VDGGLG  TI +AA AGAN IVAG+SVF A +P  VIS M++ V
Sbjct: 180 LNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMKEEV 227

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate (By similarity). Involved in the protective response to oxidative stress.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1 PE=3 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 3/110 (2%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           +R   A+KP T V+ ++ L   A  ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P 
Sbjct: 121 IRAACAIKPDTPVDVLFEL---APYLDMALVMTVEPGFGGQKFMPDMMPKVAALREKFPQ 177

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110
           LDI+VDGGLG  TI  AA AGAN IVAG+SVF A +   VIS M+ +V D
Sbjct: 178 LDIQVDGGLGKETIPHAAKAGANVIVAGTSVFAAADQKDVISYMKDNVRD 227

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPE1 PE=3 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 3/113 (2%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           ++   A+KPGT V+ ++ L   A  ++M LVMTVEPGFGGQKFMP+MM KV +LR ++P 
Sbjct: 126 IKAACAIKPGTPVDVLFEL---APYLDMALVMTVEPGFGGQKFMPDMMPKVEALRTKFPH 182

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
           ++I+VDGGLG  TI  AA AGAN IVAG+SVF A +P  VIS M++ V    K
Sbjct: 183 MNIQVDGGLGKETIGVAAKAGANVIVAGTSVFTASDPHEVISFMKEEVRKELK 235

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 78/115 (67%), Gaps = 3/115 (2%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M  G ALKP T VE + P VE    ++MVLVMTVEPG GGQ FMPE + KV  LR +YP+
Sbjct: 113 MLVGCALKPKTPVEVILPFVE---KLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPT 169

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           L++EVDGGL   T+  AA AGAN IVAG++VF A  P  VIS +R SV  AQ+  
Sbjct: 170 LNVEVDGGLSLKTVDAAADAGANVIVAGTAVFHAQSPEEVISGLRNSVMKAQETK 224

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 7/114 (6%)

Query: 2   RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS- 60
           R  +ALKP T VE   P  +    ++M+L+MTVEPGFGGQ F+  M+ K+R  R      
Sbjct: 108 RASMALKPATPVE---PYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTRELIKKH 164

Query: 61  ---LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
              L ++VDGG+  +TI   A AGA+  VAGS+V+GA +PA  +  +R   + A
Sbjct: 165 GLELWLQVDGGVSAATIERCADAGADVFVAGSAVYGASDPAEAVRALRTQADAA 218

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 76/110 (69%), Gaps = 7/110 (6%)

Query: 2   RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-- 59
           + G+++KPGT +E   P ++     + +LVM+VEPGFGGQ+F+PE++ KVR++R      
Sbjct: 113 KAGISVKPGTPLE---PYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAG 169

Query: 60  --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
             ++ +E+DGG+   TI +AA AG +C VAGS+V+GA +PA  ++ +R+ 
Sbjct: 170 ELTILVEIDGGINDDTIEQAAEAGVDCFVAGSAVYGADDPAAAVAALRRQ 219

Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

Mycobacterium tuberculosis (taxid: 1773)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
255536945	226	ribulose-5-phosphate-3-epimerase, putati	1.0	0.508	0.869	8e-52
225452134	222	PREDICTED: ribulose-phosphate 3-epimeras	0.973	0.504	0.883	2e-50
296090234	291	unnamed protein product [Vitis vinifera]	0.973	0.384	0.883	2e-50
224060236	226	predicted protein [Populus trichocarpa]	1.0	0.508	0.852	2e-50
356571509	228	PREDICTED: ribulose-phosphate 3-epimeras	0.991	0.5	0.850	6e-49
6091725	233	putative D-ribulose-5-phosphate 3-epimer	1.0	0.493	0.817	1e-48
18395962	225	ribulose-phosphate 3-epimerase [Arabidop	1.0	0.511	0.817	1e-48
255629039	228	unknown [Glycine max]	0.991	0.5	0.842	2e-48
449441680	226	PREDICTED: ribulose-phosphate 3-epimeras	1.0	0.508	0.808	5e-48
388509346	157	unknown [Lotus japonicus]	0.991	0.726	0.833	6e-48

>gi|255536945|ref|XP_002509539.1| ribulose-5-phosphate-3-epimerase, putative [Ricinus communis] gi|223549438|gb|EEF50926.1| ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]

 Score =  207 bits (526), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 100/115 (86%), Positives = 109/115 (94%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGVALKPGTS+EEVYPLVE  NPVEMVLVMTVEPGFGGQKFMP MM+KV++LR +YPS
Sbjct: 112 MRPGVALKPGTSIEEVYPLVECENPVEMVLVMTVEPGFGGQKFMPTMMEKVKTLRKKYPS 171

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAPEPAHVISLM+KSV++AQ+NS
Sbjct: 172 LDIEVDGGLGPSTIDLAASAGANCIVAGSSVFGAPEPAHVISLMKKSVQEAQENS 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452134|ref|XP_002263010.1| PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Vitis vinifera]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 105/112 (93%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGVALKPGT +EEVYPLVEG NPVEMVLVMTVEPGFGGQKFMPEMMDKVR+LR +YPS
Sbjct: 111 MRPGVALKPGTPIEEVYPLVEGENPVEMVLVMTVEPGFGGQKFMPEMMDKVRALRKKYPS 170

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAP+P  VISL+RKSVE+AQ
Sbjct: 171 LDIEVDGGLGPSTIDMAASAGANCIVAGSSVFGAPKPEQVISLLRKSVEEAQ 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090234|emb|CBI40053.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 105/112 (93%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGVALKPGT +EEVYPLVEG NPVEMVLVMTVEPGFGGQKFMPEMMDKVR+LR +YPS
Sbjct: 180 MRPGVALKPGTPIEEVYPLVEGENPVEMVLVMTVEPGFGGQKFMPEMMDKVRALRKKYPS 239

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAP+P  VISL+RKSVE+AQ
Sbjct: 240 LDIEVDGGLGPSTIDMAASAGANCIVAGSSVFGAPKPEQVISLLRKSVEEAQ 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060236|ref|XP_002300099.1| predicted protein [Populus trichocarpa] gi|118488638|gb|ABK96131.1| unknown [Populus trichocarpa] gi|222847357|gb|EEE84904.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/115 (85%), Positives = 106/115 (92%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGV+LKPGT +EEVYPLVEG NPVEMVLVMTVEPGFGGQKFMPE MDKVR+LR +YPS
Sbjct: 112 MRPGVSLKPGTPIEEVYPLVEGENPVEMVLVMTVEPGFGGQKFMPETMDKVRTLRKKYPS 171

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAP+ A VISL+RKSVE+ QKN+
Sbjct: 172 LDIEVDGGLGPSTIDMAASAGANCIVAGSSVFGAPDSAQVISLLRKSVEEVQKNN 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571509|ref|XP_003553919.1| PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Glycine max]

 Score =  197 bits (501), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 101/114 (88%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M PGVALKPGT +EEVYPLVE  NPVEMVLVMTVEPGFGGQKFMPEMMDKVR LR +YPS
Sbjct: 112 MTPGVALKPGTPIEEVYPLVEAGNPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPS 171

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAPEP  VISL+R SVE AQ+ 
Sbjct: 172 LDIEVDGGLGPSTIDVAASAGANCIVAGSSVFGAPEPVQVISLLRNSVEKAQQT 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6091725|gb|AAF03437.1|AC010797_13 putative D-ribulose-5-phosphate 3-epimerase [Arabidopsis thaliana]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 103/115 (89%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGVALKPGT VE+VYPLVEG  PVEMVLVMTVEPGFGGQKFMP+MMDKVR+LR +YP+
Sbjct: 119 MRPGVALKPGTPVEQVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQKYPT 178

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDI+VDGGLGPSTI  AA+AGANCIVAGSSVFGAPEP  VISL+R SVE AQ  +
Sbjct: 179 LDIQVDGGLGPSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTSVEKAQPTT 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395962|ref|NP_566153.1| ribulose-phosphate 3-epimerase [Arabidopsis thaliana] gi|30678440|ref|NP_850495.1| ribulose-phosphate 3-epimerase [Arabidopsis thaliana] gi|13877557|gb|AAK43856.1|AF370479_1 putative D-ribulose-5-phosphate 3-epimerase [Arabidopsis thaliana] gi|21592447|gb|AAM64398.1| putative D-ribulose-5-phosphate 3-epimerase [Arabidopsis thaliana] gi|25084145|gb|AAN72185.1| putative D-ribulose-5-phosphate 3-epimerase [Arabidopsis thaliana] gi|332640203|gb|AEE73724.1| ribulose-phosphate 3-epimerase [Arabidopsis thaliana] gi|332640204|gb|AEE73725.1| ribulose-phosphate 3-epimerase [Arabidopsis thaliana]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 103/115 (89%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGVALKPGT VE+VYPLVEG  PVEMVLVMTVEPGFGGQKFMP+MMDKVR+LR +YP+
Sbjct: 111 MRPGVALKPGTPVEQVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQKYPT 170

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDI+VDGGLGPSTI  AA+AGANCIVAGSSVFGAPEP  VISL+R SVE AQ  +
Sbjct: 171 LDIQVDGGLGPSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTSVEKAQPTT 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629039|gb|ACU14864.1| unknown [Glycine max]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 101/114 (88%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M PGVALKPGT +EEVYPLVE  NPVEMVLVMTVEPGFGGQKFMPEMMDKVR LR +YPS
Sbjct: 112 MTPGVALKPGTPIEEVYPLVEAGNPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPS 171

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAPEP  VISL++ SVE AQ+ 
Sbjct: 172 LDIEVDGGLGPSTIDVAASAGANCIVAGSSVFGAPEPVQVISLLKNSVEKAQQT 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441680|ref|XP_004138610.1| PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Cucumis sativus]

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 104/115 (90%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ GVALKPGT +EEVYPLVE  NPV++VLVMTVEPGFGGQKFMPE MDKVR+LR +YPS
Sbjct: 112 MKSGVALKPGTPIEEVYPLVESENPVDLVLVMTVEPGFGGQKFMPETMDKVRNLRQKYPS 171

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAPEP+ VIS++R SVE+AQ+ S
Sbjct: 172 LDIEVDGGLGPSTIDAAASAGANCIVAGSSVFGAPEPSEVISILRNSVEEAQQKS 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509346|gb|AFK42739.1| unknown [Lotus japonicus]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 101/114 (88%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+PGVALKPGT +E+VYPLVE  NPVEMVLVMTV PGFGGQKFMPEMMDKVR LR +YPS
Sbjct: 43  MKPGVALKPGTPIEDVYPLVEAENPVEMVLVMTVAPGFGGQKFMPEMMDKVRILRKKYPS 102

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
           LDIEVDGGLGPSTI  AASAGANCIVAGSSVFGAPEPA VISL+R SVE  Q+ 
Sbjct: 103 LDIEVDGGLGPSTIDMAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKGQQT 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
TAIR|locus:2038456	227	AT1G63290 [Arabidopsis thalian	1.0	0.506	0.834	2.6e-47
TAIR|locus:2082349	225	AT3G01850 [Arabidopsis thalian	0.973	0.497	0.839	3e-46
UNIPROTKB|G4NBH9	251	MGG_00534 "Ribulose-phosphate	0.921	0.422	0.605	3e-30
CGD|CAL0002810	230	orf19.7108 [Candida albicans (	0.939	0.469	0.576	1.6e-29
UNIPROTKB|G5E6S3	187	RPE "Uncharacterized protein"	0.973	0.598	0.586	3.4e-29
UNIPROTKB|C9J6A7	159	RPE "Ribulose-phosphate 3-epim	0.973	0.704	0.577	4.4e-29
UNIPROTKB|C9JPQ7	160	RPE "Ribulose-phosphate 3-epim	0.973	0.7	0.577	4.4e-29
UNIPROTKB|Q96AT9	228	RPE "Ribulose-phosphate 3-epim	0.973	0.491	0.577	4.4e-29
UNIPROTKB|Q5R5Y2	228	RPE "Ribulose-phosphate 3-epim	0.973	0.491	0.577	4.4e-29
UNIPROTKB|F1NT24	243	RPE "Ribulose-phosphate 3-epim	0.956	0.452	0.578	5.6e-29

TAIR|locus:2038456 AT1G63290 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 96/115 (83%), Positives = 105/115 (91%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             MRPGVALKPGT VE+VYPLVEG NPVEMVLVMTVEPGFGGQKFMP MMDKVR+LRN+YP+
Sbjct:   113 MRPGVALKPGTPVEQVYPLVEGTNPVEMVLVMTVEPGFGGQKFMPSMMDKVRALRNKYPT 172

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
             LDIEVDGGLGPSTI  AA+AGANCIVAGSSVFGAP+P  VISL+R SVE AQ ++
Sbjct:   173 LDIEVDGGLGPSTIDAAAAAGANCIVAGSSVFGAPKPGDVISLLRASVEKAQPST 227

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2082349 AT3G01850 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 94/112 (83%), Positives = 102/112 (91%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             MRPGVALKPGT VE+VYPLVEG  PVEMVLVMTVEPGFGGQKFMP+MMDKVR+LR +YP+
Sbjct:   111 MRPGVALKPGTPVEQVYPLVEGTTPVEMVLVMTVEPGFGGQKFMPDMMDKVRALRQKYPT 170

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
             LDI+VDGGLGPSTI  AA+AGANCIVAGSSVFGAPEP  VISL+R SVE AQ
Sbjct:   171 LDIQVDGGLGPSTIDTAAAAGANCIVAGSSVFGAPEPGDVISLLRTSVEKAQ 222

GO:0003824 "catalytic activity" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|G4NBH9 MGG_00534 "Ribulose-phosphate 3-epimerase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 66/109 (60%), Positives = 85/109 (77%)

Query:     4 GVALKPGTSVEEVYPLVEGANPVE---MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             G+A+KP T  + +Y L++ ++  E   MVLVMTVEPGFGGQKFM   + KV++LR RYP 
Sbjct:   137 GIAIKPATPADVLYELLDSSDAAERPDMVLVMTVEPGFGGQKFMASELPKVQALRQRYPE 196

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
             L+IEVDGGLGP TI +AA AGAN IVAGS+VFGA +PA VI ++R+SV+
Sbjct:   197 LNIEVDGGLGPGTIDQAADAGANVIVAGSAVFGAKDPAEVIKVLRESVQ 245

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0002810 orf19.7108 [Candida albicans (taxid:5476)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 64/111 (57%), Positives = 84/111 (75%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             ++  +A+KP T VEEV+P  E    ++MVLVMTVEPGFGGQKFMP+MM KV +LR +YP+
Sbjct:   117 LKAAMAIKPKTPVEEVFPYAED---LDMVLVMTVEPGFGGQKFMPDMMPKVETLREKYPN 173

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
             LD++VDGGLG  TI  AA AGAN IVAG+SVF   +P  V+  ++++V DA
Sbjct:   174 LDVQVDGGLGKDTIQPAADAGANVIVAGTSVFKPEDPKPVVQYLKQTVADA 224

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

UNIPROTKB|G5E6S3 RPE "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 68/116 (58%), Positives = 86/116 (74%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct:    72 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 128

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
             LDIEVDGG+GP TI + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   129 LDIEVDGGVGPDTIHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 184

GO:0046872 "metal ion binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|C9J6A7 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 67/116 (57%), Positives = 86/116 (74%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct:    45 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 101

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
             LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   102 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 157

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

UNIPROTKB|C9JPQ7 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 67/116 (57%), Positives = 86/116 (74%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct:    45 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 101

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
             LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   102 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 157

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

UNIPROTKB|Q96AT9 RPE "Ribulose-phosphate 3-epimerase" [Homo sapiens (taxid:9606)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 67/116 (57%), Positives = 86/116 (74%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct:   113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
             LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IDA

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=EXP;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IDA;TAS

GO:0006098 "pentose-phosphate shunt" evidence=IDA;TAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q5R5Y2 RPE "Ribulose-phosphate 3-epimerase" [Pongo abelii (taxid:9601)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 67/116 (57%), Positives = 86/116 (74%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct:   113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
             LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct:   170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

GO:0046872 "metal ion binding" evidence=ISS

UNIPROTKB|F1NT24 RPE "Ribulose-phosphate 3-epimerase" [Gallus gallus (taxid:9031)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 66/114 (57%), Positives = 87/114 (76%)

Query:     1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
             M+ G+A+KPGT+VE++ P    AN ++M LVMTVEPGFGGQKFM +MM KV+ LR ++PS
Sbjct:   128 MKVGLAIKPGTTVEQLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVQWLRTQFPS 184

Query:    61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQK 113
             LDIEVDGG+GP TI + A AGAN IV+GS++  + +P  VI+L+R    E AQK
Sbjct:   185 LDIEVDGGVGPDTIHKCAEAGANMIVSGSAIMKSADPRSVINLLRNVCSEAAQK 238

GO:0004750 "ribulose-phosphate 3-epimerase activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE42	RPE1_ORYSJ	5, ., 1, ., 3, ., 1	0.8	1.0	0.5043	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.1	0.914
3rd Layer	5.1.3	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	115
PLN02334	229	PLN02334, PLN02334, ribulose-phosphate 3-epimerase	2e-64
PTZ00170	228	PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epime	8e-55
cd00429	211	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RP	3e-50
PRK05581	220	PRK05581, PRK05581, ribulose-phosphate 3-epimerase	4e-45
COG0036	220	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Car	3e-39
pfam00834	201	pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 ep	2e-34
TIGR01163	210	TIGR01163, rpe, ribulose-phosphate 3-epimerase	2e-33
PRK08745	223	PRK08745, PRK08745, ribulose-phosphate 3-epimerase	4e-22
PRK08883	220	PRK08883, PRK08883, ribulose-phosphate 3-epimerase	1e-20
PRK09722	229	PRK09722, PRK09722, allulose-6-phosphate 3-epimera	4e-18
PRK08005	210	PRK08005, PRK08005, epimerase; Validated	1e-10
COG0269	217	COG0269, SgbH, 3-hexulose-6-phosphate synthase and	5e-05
TIGR01334	277	TIGR01334, modD, putative molybdenum utilization p	1e-04
PRK14057	254	PRK14057, PRK14057, epimerase; Provisional	1e-04
cd01568	269	cd01568, QPRTase_NadC, Quinolinate phosphoribosyl	3e-04
TIGR03128	206	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synth	9e-04
cd00564	196	cd00564, TMP_TenI, Thiamine monophosphate synthase	0.002
pfam01729	169	pfam01729, QRPTase_C, Quinolinate phosphoribosyl t	0.002

>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase

 Score =  194 bits (495), Expect = 2e-64
 Identities = 77/115 (66%), Positives = 89/115 (77%), Gaps = 1/115 (0%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ GV L PGT VE V P+VE    V+MVLVM+VEPGFGGQ F+P MMDKVR+LR +YP 
Sbjct: 116 MKAGVVLNPGTPVEAVEPVVEKGL-VDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPE 174

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDIEVDGG+GPSTI +AA AGAN IVAGS+VFGAP+ A VIS +R SVE A    
Sbjct: 175 LDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV 229

Length = 229

>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase; Provisional

 Score =  170 bits (432), Expect = 8e-55
 Identities = 65/109 (59%), Positives = 81/109 (74%), Gaps = 1/109 (0%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ GVA+KP T VE ++PL++    V+MVLVMTVEPGFGGQ FM +MM KVR LR RYP 
Sbjct: 115 MKVGVAIKPKTPVEVLFPLIDTDL-VDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPH 173

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
           L+I+VDGG+   TI  AA AGAN IVAGSS+F A +    I L+R+SV+
Sbjct: 174 LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222

Length = 228

>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)

 Score =  158 bits (401), Expect = 3e-50
 Identities = 54/109 (49%), Positives = 75/109 (68%), Gaps = 7/109 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP- 59
           M+ GVAL PGT VE + P ++    V++VLVM+V PGFGGQKF+PE+++K+R LR   P 
Sbjct: 106 MKAGVALNPGTPVEVLEPYLD---EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPE 162

Query: 60  ---SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 105
              +L IEVDGG+   TI   A AGA+ +VAGS++FG+ + A  I  +R
Sbjct: 163 NNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. Length = 211

>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated

 Score =  144 bits (367), Expect = 4e-45
 Identities = 47/111 (42%), Positives = 71/111 (63%), Gaps = 7/111 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
           ++ G+ L P T +E +  +++    +++VL+M+V PGFGGQKF+PE+++K+R LR     
Sbjct: 110 IKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDE 166

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
           R   + IEVDGG+    I E A AGA+  VAGS+VFGAP+    I  +R  
Sbjct: 167 RGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217

Length = 220

>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

 Score =  129 bits (328), Expect = 3e-39
 Identities = 47/114 (41%), Positives = 74/114 (64%), Gaps = 6/114 (5%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP- 59
           ++ G+ L P T +E + P+++    V++VL+M+V PGFGGQKF+PE+++K+R LR     
Sbjct: 110 VKAGLVLNPATPLEALEPVLD---DVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDE 166

Query: 60  --SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
              + IEVDGG+   TI + A+AGA+  VAGS++FGA +    I  +R  +  A
Sbjct: 167 RLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGELLKA 220

Length = 220

>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family

 Score =  117 bits (294), Expect = 2e-34
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 7/99 (7%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
            + G+ L P T ++ +  L++    +++VL+M+V PGFGGQ F+P ++ K+R +R     
Sbjct: 106 AKAGLVLNPATPLDAIEYLLD---DLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMIDE 162

Query: 61  ----LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95
                 IEVDGG+    I + A AGA+ +VAGS+VFGAP
Sbjct: 163 GGLDTLIEVDGGVNLDNIPQIAEAGADVLVAGSAVFGAP 201

This enzyme catalyzes the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate. Length = 201

>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase

 Score =  115 bits (289), Expect = 2e-33
 Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 7/108 (6%)

Query: 2   RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR---NRY 58
           + G+ L P T +E +  ++     V++VL+M+V PGFGGQKF+P+ ++K+R +R   +  
Sbjct: 106 KAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDEN 162

Query: 59  -PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 105
             S+ IEVDGG+      E A AGA+ +VAGS++FGA +   VI  +R
Sbjct: 163 GLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR 210

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants [Energy metabolism, Pentose phosphate pathway]. Length = 210

>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional

 Score = 86.2 bits (213), Expect = 4e-22
 Identities = 46/116 (39%), Positives = 74/116 (63%), Gaps = 9/116 (7%)

Query: 2   RPGVALKPGTSVEEVYPLVEGANP-VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           + G+ L P T V+    +++   P +++VLVM+V PGFGGQ F+P  +DK+R++R +  +
Sbjct: 112 QAGLVLNPATPVD----ILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDA 167

Query: 61  LD----IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
           L     +E+DGG+    I   A+AGA+  VAGS++F AP+ A VI+ MR +V   +
Sbjct: 168 LGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAAVR 223

Length = 223

>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional

 Score = 82.4 bits (203), Expect = 1e-20
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 7/115 (6%)

Query: 2   RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS- 60
           + GV L P T +  +  +++    V+++L+M+V PGFGGQ F+P  +DK+R++R      
Sbjct: 108 QAGVVLNPATPLHHLEYIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDES 164

Query: 61  ---LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
              + +E+DGG+    I E A AGA+  VAGS++FG P+   VI  MR  +   +
Sbjct: 165 GRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAKVK 219

Length = 220

>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional

 Score = 75.8 bits (187), Expect = 4e-18
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-----R 55
           M+ G+ L P T VE +   +     ++ + VMTV+PGF GQ F+PEM+DK+  L     R
Sbjct: 109 MKVGLVLNPETPVESIKYYIH---LLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRER 165

Query: 56  NRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90
           N    L IEVDG     T  +   AGA+  + G+S
Sbjct: 166 NGLEYL-IEVDGSCNQKTYEKLMEAGADVFIVGTS 199

Length = 229

>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 2   RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSL 61
           + G+AL P T +     L   A  ++ +++MT EP   GQ+F+  M +KV   R  +P+ 
Sbjct: 108 KAGLALNPATPLLPYRYL---ALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA 164

Query: 62  DIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
           +   DGG+        A+AGA  +V G ++F
Sbjct: 165 ECWADGGITLRAARLLAAAGAQHLVIGRALF 195

Length = 210

>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 40  GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAH 99
           G+ +  + ++K++ L +      + V GG+ P  I      GA+ ++ G ++ GA +PA 
Sbjct: 146 GKSWGEDDLEKIKKLSD--LGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAE 203

Query: 100 VISLMRKSVE 109
                ++ ++
Sbjct: 204 AARKFKEEID 213

Length = 217

>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 20  VEGANPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPSTI 74
           VE     + + V+   P      KF P+   ++  L  R    D    +   GG+ P  I
Sbjct: 193 VEADTIEQALTVLQASPDILQLDKFTPQ---QLHHLHERLKFFDHIPTLAAAGGINPENI 249

Query: 75  AEAASAGANCIVAGSSVFGAPEPAHVI 101
           A+   AG +  +  +  + AP    V 
Sbjct: 250 ADYIEAGIDLFITSAPYYAAPCDIKVK 276

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown [Unknown function, General]. Length = 277

>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 4   GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----NRYP 59
           G++L P T ++ + P++   + VE++ ++ V PG+G +    ++ ++V  L     ++  
Sbjct: 136 GISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKRE 192

Query: 60  SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
              I +DG L    +    + G + +V+GS++F
Sbjct: 193 GKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALF 225

Length = 254

>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 42  KFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95
              PE + +   L    P + +E  GG+    I   A  G + I  G+    AP
Sbjct: 209 NMSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALTHSAP 262

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. Length = 269

>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 63  IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 106
           + V GG+   TI +    G + ++ G ++  A +PA     +RK
Sbjct: 161 VAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRK 204

Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. Length = 206

>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 67  GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK 106
           GG+ P   AE  +AGA+ +   S++ GA +PA     +  
Sbjct: 157 GGITPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196

>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase, C-terminal domain

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 42  KFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95
            F PE + + V  L  R   + +EV GG+    + E A  G + I  G+     P
Sbjct: 108 NFSPEEVREAVEELDERAGRVLLEVSGGITLDNVLEYAKTGVDVISVGALTHSVP 162

Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyzes the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	100.0
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	100.0
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	100.0
PRK08005	210	epimerase; Validated	100.0
PRK14057	254	epimerase; Provisional	100.0
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	100.0
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	100.0
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	100.0
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	99.97
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	99.95
PLN02334	229	ribulose-phosphate 3-epimerase	99.94
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	99.87
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	99.84
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	99.83
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.82
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.81
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	99.81
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	99.79
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	99.78
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.74
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	99.73
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	99.69
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	99.69
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	99.68
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	99.62
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	99.59
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	99.53
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.51
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	99.46
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	99.45
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	99.44
PRK07695	201	transcriptional regulator TenI; Provisional	99.43
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	99.38
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	99.35
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	99.29
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	99.28
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	99.21
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	99.14
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.12
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.12
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	99.09
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	99.08
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.07
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.03
PRK08999	312	hypothetical protein; Provisional	98.97
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	98.96
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	98.94
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	98.91
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	98.84
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.81
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	98.8
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.8
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	98.78
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	98.78
PRK06806	281	fructose-bisphosphate aldolase; Provisional	98.76
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	98.75
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.72
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	98.71
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	98.67
PRK00208	250	thiG thiazole synthase; Reviewed	98.67
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	98.65
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.64
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	98.61
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	98.58
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	98.57
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	98.57
PLN02591	250	tryptophan synthase	98.57
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	98.55
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	98.55
TIGR01334	277	modD putative molybdenum utilization protein ModD.	98.47
PRK07315	293	fructose-bisphosphate aldolase; Provisional	98.46
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	98.45
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	98.45
PRK04302	223	triosephosphate isomerase; Provisional	98.44
PRK06096	284	molybdenum transport protein ModD; Provisional	98.42
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	98.41
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	98.34
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.31
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	98.3
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	98.25
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	98.21
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	98.18
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.16
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	98.15
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	98.15
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.15
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	98.14
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	98.11
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	98.11
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.11
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	98.11
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.1
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	98.1
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	98.08
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	98.08
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.02
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.02
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	98.0
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.98
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	97.95
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.91
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.89
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	97.86
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	97.86
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	97.84
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	97.82
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.82
PRK06801	286	hypothetical protein; Provisional	97.79
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.78
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	97.77
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.76
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	97.75
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.74
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.74
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.73
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.69
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	97.68
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	97.68
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	97.66
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	97.64
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.63
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.62
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	97.6
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.6
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.58
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.58
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	97.56
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	97.55
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.54
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.54
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.49
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	97.49
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.49
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	97.48
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.48
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	97.46
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.45
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	97.44
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	97.43
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	97.42
PRK08662	343	nicotinate phosphoribosyltransferase; Reviewed	97.41
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.39
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	97.38
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.35
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.35
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	97.34
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	97.33
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	97.3
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	97.27
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	97.27
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	97.25
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.25
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.24
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.23
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	97.23
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	97.22
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.22
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.19
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	97.18
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.17
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	97.13
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	97.1
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	97.1
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.08
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.06
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.04
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	97.02
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	97.01
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	97.0
PLN02826	409	dihydroorotate dehydrogenase	96.96
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	96.95
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	96.89
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	96.88
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	96.88
PRK08227	264	autoinducer 2 aldolase; Validated	96.87
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	96.86
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	96.83
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	96.81
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	96.8
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.8
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.77
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	96.74
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	96.74
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	96.74
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	96.73
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	96.73
PRK14024	241	phosphoribosyl isomerase A; Provisional	96.72
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	96.69
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	96.69
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	96.66
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.66
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.65
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	96.65
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	96.62
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	96.59
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	96.57
PRK11572	248	copper homeostasis protein CutC; Provisional	96.57
PF06073	110	DUF934: Bacterial protein of unknown function (DUF	96.57
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	96.56
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	96.56
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	96.56
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	96.55
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.51
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.48
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	96.48
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	96.47
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	96.44
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	96.43
PRK05500	477	bifunctional orotidine 5'-phosphate decarboxylase/	96.41
PLN02535	364	glycolate oxidase	96.4
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	96.39
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	96.36
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.32
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	96.31
PRK13523	337	NADPH dehydrogenase NamA; Provisional	96.3
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	96.28
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.27
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	96.27
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	96.27
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	96.26
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	96.25
PRK06852	304	aldolase; Validated	96.24
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	96.21
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.2
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.1
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.09
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	96.07
PRK02261	137	methylaspartate mutase subunit S; Provisional	96.06
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	96.04
PLN02363	256	phosphoribosylanthranilate isomerase	95.99
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	95.91
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	95.89
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	95.88
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	95.88
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	95.85
PRK14565	237	triosephosphate isomerase; Provisional	95.84
PRK10605	362	N-ethylmaleimide reductase; Provisional	95.78
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	95.75
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	95.74
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	95.71
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	95.69
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	95.69
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	95.68
PLN02979	366	glycolate oxidase	95.63
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	95.62
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	95.59
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	95.58
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	95.56
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.45
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	95.4
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	95.39
PLN02460	338	indole-3-glycerol-phosphate synthase	95.38
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	95.37
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	95.36
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	95.34
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	95.33
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	95.31
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	95.31
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	95.29
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	95.29
COG0325	228	Predicted enzyme with a TIM-barrel fold [General f	95.26
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	95.25
PRK08185	283	hypothetical protein; Provisional	95.24
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	95.18
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	95.11
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	95.1
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	95.03
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	94.9
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	94.87
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.82
PLN02411	391	12-oxophytodienoate reductase	94.81
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	94.75
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	94.66
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	94.62
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	94.56
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	94.56
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	94.46
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	94.36
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	94.35
PRK14567	253	triosephosphate isomerase; Provisional	94.31
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	94.02
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	94.0
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	93.97
cd06822	227	PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-	93.95
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	93.93
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	93.89
KOG0538	363	consensus Glycolate oxidase [Energy production and	93.85
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	93.78
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	93.63
COG3142	241	CutC Uncharacterized protein involved in copper re	93.36
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	93.34
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	92.97
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	92.91
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	92.86
cd02069	213	methionine_synthase_B12_BD B12 binding domain of m	92.52
KOG3055	263	consensus Phosphoribosylformimino-5-aminoimidazole	92.46
KOG1799	471	consensus Dihydropyrimidine dehydrogenase [Nucleot	92.29
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	92.23
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	92.18
PRK00042	250	tpiA triosephosphate isomerase; Provisional	91.96
PLN02623	581	pyruvate kinase	91.75
PLN02429	315	triosephosphate isomerase	91.73
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	91.37
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	91.31
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	91.2
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	91.15
COG1411	229	Uncharacterized protein related to proFAR isomeras	91.06
COG1692	266	Calcineurin-like phosphoesterase [General function	90.7
PLN02617	538	imidazole glycerol phosphate synthase hisHF	90.59
PRK09250	348	fructose-bisphosphate aldolase; Provisional	90.58
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	90.53
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	90.46
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	90.35
PRK09426	714	methylmalonyl-CoA mutase; Reviewed	90.14
PRK15492	260	triosephosphate isomerase; Provisional	90.12
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	90.08
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	90.06
PTZ00333	255	triosephosphate isomerase; Provisional	89.99
cd02070	201	corrinoid_protein_B12-BD B12 binding domain of cor	89.81
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	89.23
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	88.95
PRK11475	207	DNA-binding transcriptional activator BglJ; Provis	88.88
cd08207	406	RLP_NonPhot Ribulose bisphosphate carboxylase like	88.87
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	88.61
PF13277	253	YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.	88.43
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	88.26
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	88.17
TIGR00419	205	tim triosephosphate isomerase. Triosephosphate iso	88.05
TIGR01417	565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	88.04
PRK06464	795	phosphoenolpyruvate synthase; Validated	88.03
cd04824	320	eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthas	87.89
PRK10128	267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	87.87
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	87.69
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	87.59
PRK08508	279	biotin synthase; Provisional	87.43
PRK02227	238	hypothetical protein; Provisional	87.39
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	87.25
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	86.84
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	86.3
PLN02428	349	lipoic acid synthase	86.18
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	86.18
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	86.14
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	86.1
TIGR02370	197	pyl_corrinoid methyltransferase cognate corrinoid	86.01
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	85.87
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	85.65
TIGR00045	375	glycerate kinase. The only characterized member of	85.55
PRK01362	214	putative translaldolase; Provisional	85.51
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	85.48
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	85.42
TIGR03239	249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	85.41
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	85.38
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	85.2
TIGR00676	272	fadh2 5,10-methylenetetrahydrofolate reductase, pr	85.17
PF00121	244	TIM: Triosephosphate isomerase; InterPro: IPR00065	85.07
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	85.03
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	84.93
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	84.79
COG3749	167	Uncharacterized protein conserved in bacteria [Fun	84.7
PRK07084	321	fructose-bisphosphate aldolase; Provisional	84.6
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	84.08
TIGR01418	782	PEP_synth phosphoenolpyruvate synthase. Also calle	83.93
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	83.8
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	83.65
COG1891	235	Uncharacterized protein conserved in archaea [Func	83.46
PRK08444	353	hypothetical protein; Provisional	83.44
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	83.32
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	83.28
KOG3157	244	consensus Proline synthetase co-transcribed protei	83.26
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	83.1
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	83.07
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	82.74
cd02068	127	radical_SAM_B12_BD B12 binding domain_like associa	82.72
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	82.51
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	82.37
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	82.11
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	81.99
PLN02561	253	triosephosphate isomerase	81.96
COG3836	255	HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	81.93
PRK10643	222	DNA-binding transcriptional regulator BasR; Provis	81.9
PRK12581	468	oxaloacetate decarboxylase; Provisional	81.79
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	81.57
KOG4201	289	consensus Anthranilate synthase component II [Amin	81.54
PRK11613	282	folP dihydropteroate synthase; Provisional	81.52
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	81.49
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	81.42
TIGR03326	412	rubisco_III ribulose bisphosphate carboxylase, typ	81.29
PF08029	75	HisG_C: HisG, C-terminal domain; InterPro: IPR0131	81.25
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	81.13
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	80.9
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	80.78
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	80.75
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	80.7
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	80.69
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	80.57
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	80.56
PTZ00413	398	lipoate synthase; Provisional	80.48
PLN02979	366	glycolate oxidase	80.37
COG2197	211	CitB Response regulator containing a CheY-like rec	80.04

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.5e-35  Score=216.66  Aligned_cols=107  Identities=43%  Similarity=0.782  Sum_probs=101.6

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC---CCcEEEEcCCChhhHHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGLGPSTIAEA   77 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~---~~~i~~dGGI~~~ni~~l   77 (115)
                      +|+|++|||+||++.+++++   +.+|+|++|+|+|||+||+|++++++||+++|++..   ++.|+||||||.+|++++
T Consensus       110 ~kaGv~lnP~Tp~~~i~~~l---~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~  186 (220)
T COG0036         110 VKAGLVLNPATPLEALEPVL---DDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQL  186 (220)
T ss_pred             CeEEEEECCCCCHHHHHHHH---hhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHH
Confidence            68999999999999999999   999999999999999999999999999999999876   678999999999999999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      .++|||++|+||++|+++|+++.+++++..+..
T Consensus       187 ~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~~  219 (220)
T COG0036         187 AAAGADVFVAGSALFGADDYKATIRELRGELLK  219 (220)
T ss_pred             HHcCCCEEEEEEEEeCCccHHHHHHHHHHHhhc
Confidence            999999999999999999999999999987653

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=1.8e-34  Score=215.03  Aligned_cols=108  Identities=41%  Similarity=0.752  Sum_probs=102.0

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~   76 (115)
                      +|+||||||+||++.+++|+   +.+|+|++|+|+|||+||+|.+.+++|+++++++    ..++.|+||||||.+|+++
T Consensus       111 ~k~GlalnP~T~~~~i~~~l---~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~  187 (223)
T PRK08745        111 CQAGLVLNPATPVDILDWVL---PELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGA  187 (223)
T ss_pred             CceeEEeCCCCCHHHHHHHH---hhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHH
Confidence            58999999999999999999   9999999999999999999999999999999887    3457899999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      +.++|||++|+||+||+++|++++++++++.+.++
T Consensus       188 l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~~~  222 (223)
T PRK08745        188 IAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVAAV  222 (223)
T ss_pred             HHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999887654

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=100.00  E-value=1.4e-33  Score=210.76  Aligned_cols=104  Identities=20%  Similarity=0.359  Sum_probs=98.8

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEA   77 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~l   77 (115)
                      |+||||||+||++.+++|+   +.+|+|++|+|+|||+||+|.+.+++||+++|++.    .++.|+||||||.+|++++
T Consensus       120 kaGlalnP~Tp~~~i~~~l---~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l  196 (228)
T PRK08091        120 LIGLCLCPETPISLLEPYL---DQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYL  196 (228)
T ss_pred             eEEEEECCCCCHHHHHHHH---hhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHH
Confidence            8999999999999999999   99999999999999999999999999999998763    3577999999999999999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      .++|||++|+||+||+++|+++.+++|++.+
T Consensus       197 ~~aGaD~~V~GSalF~~~d~~~~i~~l~~~~  227 (228)
T PRK08091        197 KQHQIDWVVSGSALFSQGELKTTLKEWKSSL  227 (228)
T ss_pred             HHCCCCEEEEChhhhCCCCHHHHHHHHHHhh
Confidence            9999999999999999889999999999865

>PRK08005 epimerase; Validated

Probab=100.00  E-value=2.1e-33  Score=207.66  Aligned_cols=102  Identities=28%  Similarity=0.460  Sum_probs=97.6

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +|+||||||+||++.+++++   +.+|+|++|+|+|||+||+|.+.+++||+++|+++++..|+||||||.+|++++.++
T Consensus       107 ~k~GlAlnP~Tp~~~i~~~l---~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~a  183 (210)
T PRK08005        107 AKAGLALNPATPLLPYRYLA---LQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAA  183 (210)
T ss_pred             CcEEEEECCCCCHHHHHHHH---HhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHC
Confidence            58999999999999999999   999999999999999999999999999999999887778999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      |||++|+||+||+++|+++.++.|.
T Consensus       184 Gad~~V~GsaiF~~~d~~~~~~~~~  208 (210)
T PRK08005        184 GAQHLVIGRALFTTANYDVTLSQFT  208 (210)
T ss_pred             CCCEEEEChHhhCCCCHHHHHHHHh
Confidence            9999999999999889988888775

>PRK14057 epimerase; Provisional

Probab=100.00  E-value=2.8e-33  Score=211.66  Aligned_cols=108  Identities=22%  Similarity=0.405  Sum_probs=101.5

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEA   77 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~l   77 (115)
                      ++||||||+||++.+++++   +.+|+|++|+|+|||+||+|++.+++||+++|++.    .++.|+||||||.+|++++
T Consensus       134 kaGlAlnP~Tp~e~i~~~l---~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l  210 (254)
T PRK14057        134 IRGISLCPATPLDVIIPIL---SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSL  210 (254)
T ss_pred             eeEEEECCCCCHHHHHHHH---HhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHH
Confidence            6999999999999999999   99999999999999999999999999999998763    3588999999999999999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      .++|||++|+||++|+++|+++.+++|++.+..++
T Consensus       211 ~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~~~~  245 (254)
T PRK14057        211 IAQGIDRVVSGSALFRDDRLVENTRSWRAMFKVAG  245 (254)
T ss_pred             HHCCCCEEEEChHhhCCCCHHHHHHHHHHHHhhcC
Confidence            99999999999999998899999999998877654

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=1.3e-32  Score=205.65  Aligned_cols=108  Identities=34%  Similarity=0.598  Sum_probs=100.1

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~   76 (115)
                      +|+||||||+||++.+++++   +.+|+|++|+|+|||+||+|++.+++||+++|++.    .++.|+||||||.+|+++
T Consensus       109 ~kaGlalnP~T~~~~l~~~l---~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~  185 (229)
T PRK09722        109 MKVGLVLNPETPVESIKYYI---HLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEK  185 (229)
T ss_pred             CCEEEEeCCCCCHHHHHHHH---HhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence            68999999999999999999   99999999999999999999999999999999763    357799999999999999


Q ss_pred             HHHcCCCEEEEcc-cccC-CCCHHHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGS-SVFG-APEPAHVISLMRKSVEDA  111 (115)
Q Consensus        77 l~~~Gad~iv~Gs-aif~-~~d~~~~~~~l~~~~~~~  111 (115)
                      +.++|||++|+|| +||+ .+|+++.++.+++.++++
T Consensus       186 ~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~  222 (229)
T PRK09722        186 LMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEAA  222 (229)
T ss_pred             HHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999995 5998 578999999999887754

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-32  Score=199.86  Aligned_cols=110  Identities=69%  Similarity=1.073  Sum_probs=106.3

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ||+|+||+|+||++.+++++   +.+|++|||+|+|||+||+|.++.+.|++.+|+.+|++.|++|||++++|+..+.++
T Consensus       113 mk~G~alkPgT~Ve~~~~~~---~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~A  189 (224)
T KOG3111|consen  113 MKVGLALKPGTPVEDLEPLA---EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEA  189 (224)
T ss_pred             CeeeEEeCCCCcHHHHHHhh---ccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHc
Confidence            68999999999999999999   999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  113 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~  113 (115)
                      |||.+|+||++|++.|+.+.++.||+....+++
T Consensus       190 GAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~~  222 (224)
T KOG3111|consen  190 GANMIVAGSAVFGAADPSDVISLLRNSVEKAAC  222 (224)
T ss_pred             CCCEEEecceeecCCCHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999998877553

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=100.00  E-value=9.7e-33  Score=205.33  Aligned_cols=107  Identities=39%  Similarity=0.757  Sum_probs=101.7

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~   76 (115)
                      +|+|+||||+||++.+++++   +.+|+|++|+|+|||+||+|.+.++++++++++...    +++|+||||||++|+++
T Consensus       107 ~k~GlalnP~Tp~~~i~~~l---~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~  183 (220)
T PRK08883        107 CQAGVVLNPATPLHHLEYIM---DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIRE  183 (220)
T ss_pred             CcEEEEeCCCCCHHHHHHHH---HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHH
Confidence            58999999999999999999   999999999999999999999999999999988743    58999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +.++|||++|+||+||+++|++++++++++.+++
T Consensus       184 l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~  217 (220)
T PRK08883        184 IAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAK  217 (220)
T ss_pred             HHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988765

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=99.97  E-value=5.1e-31  Score=193.85  Aligned_cols=92  Identities=51%  Similarity=0.915  Sum_probs=80.1

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~   76 (115)
                      +|+||||||.||++.+++|+   +.+|+|++|+|+|||+||+|.+.+++||++++++.    .++.|+||||||.+|+++
T Consensus       106 ~k~GialnP~T~~~~~~~~l---~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~  182 (201)
T PF00834_consen  106 IKAGIALNPETPVEELEPYL---DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQ  182 (201)
T ss_dssp             SEEEEEE-TTS-GGGGTTTG---CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHH
T ss_pred             CCEEEEEECCCCchHHHHHh---hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHH
Confidence            58999999999999999999   99999999999999999999999999999998764    469999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCC
Q 033625           77 AASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~   95 (115)
                      +.++|||++|+||+||+++
T Consensus       183 ~~~aGad~~V~Gs~iF~~~  201 (201)
T PF00834_consen  183 LVEAGADIFVAGSAIFKAD  201 (201)
T ss_dssp             HHHHT--EEEESHHHHTS-
T ss_pred             HHHcCCCEEEECHHHhCCC
Confidence            9999999999999999864

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=99.95  E-value=6.6e-28  Score=179.97  Aligned_cols=110  Identities=59%  Similarity=0.944  Sum_probs=103.4

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +++||++||.|+++.++++++. +.+|+|++|+++||++||.|.+..+++++++++..++..|+||||||++|++.+.++
T Consensus       115 ~~~gval~p~t~~e~l~~~l~~-~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~a  193 (228)
T PTZ00170        115 MKVGVAIKPKTPVEVLFPLIDT-DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADA  193 (228)
T ss_pred             CeEEEEECCCCCHHHHHHHHcc-chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHc
Confidence            5799999999999999999843 679999999999999999999999999999999887889999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      |||++|+||+||+++||+++++++++.+++.
T Consensus       194 Gad~iVvGsaI~~a~d~~~~~~~i~~~~~~~  224 (228)
T PTZ00170        194 GANVIVAGSSIFKAKDRKQAIELLRESVQKH  224 (228)
T ss_pred             CCCEEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998763

>PLN02334 ribulose-phosphate 3-epimerase

Probab=99.94  E-value=1.9e-26  Score=171.56  Aligned_cols=108  Identities=70%  Similarity=1.107  Sum_probs=102.4

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCC--CCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANP--VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA   78 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~--vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~   78 (115)
                      +++|++++|+|+++.+++++   +.  +|||++|+++||+++|+|.+..+++++++++..+++||+||||||++|++++.
T Consensus       116 ~~iGls~~~~t~~~~~~~~~---~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~  192 (229)
T PLN02334        116 MKAGVVLNPGTPVEAVEPVV---EKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAA  192 (229)
T ss_pred             CeEEEEECCCCCHHHHHHHH---hccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHH
Confidence            46899999999999999999   87  99999999999999999999999999999998778899999999999999999


Q ss_pred             HcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           79 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      ++|||++|+||+||+++||++++++|++.++++
T Consensus       193 ~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~  225 (229)
T PLN02334        193 EAGANVIVAGSAVFGAPDYAEVISGLRASVEKA  225 (229)
T ss_pred             HcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999887764

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=99.87  E-value=2.2e-21  Score=142.25  Aligned_cols=105  Identities=44%  Similarity=0.825  Sum_probs=95.2

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~   76 (115)
                      +++|+.++|+|+.+.++++.   ..+||+++|+++||.+||.+.+..+++++++++..+    ++++.++||||++|+++
T Consensus       110 ~~~g~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~  186 (220)
T PRK05581        110 IKAGLVLNPATPLEPLEDVL---DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKE  186 (220)
T ss_pred             CEEEEEECCCCCHHHHHHHH---hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence            36899999999999999988   789999999999999999999999999999887643    25688999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      +.++|+|++|+||+||+++||.+++++|++.+
T Consensus       187 l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~  218 (220)
T PRK05581        187 CAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL  218 (220)
T ss_pred             HHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999998765

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=99.84  E-value=1.7e-20  Score=136.38  Aligned_cols=101  Identities=44%  Similarity=0.768  Sum_probs=92.2

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAEA   77 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~l   77 (115)
                      +.|+.++++|+.+.++++.   ..+|++++|+++||++|+.|.+..+++++++++..    +++|+.++||||++|++++
T Consensus       106 ~~~~~~~~~t~~e~~~~~~---~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l  182 (210)
T TIGR01163       106 KAGIVLNPATPLEFLEYVL---PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNAREL  182 (210)
T ss_pred             cEEEEECCCCCHHHHHHHH---hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHH
Confidence            5789999999999999998   78999999999999999999999999998887653    3478999999999999999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625           78 ASAGANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      .+.|+|++++||+||+++||++++++++
T Consensus       183 ~~~gad~iivgsai~~~~d~~~~~~~~~  210 (210)
T TIGR01163       183 AEAGADILVAGSAIFGADDYKEVIRSLR  210 (210)
T ss_pred             HHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence            9999999999999999999999988763

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=99.83  E-value=5.1e-20  Score=133.57  Aligned_cols=101  Identities=52%  Similarity=0.895  Sum_probs=92.1

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAEA   77 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~l   77 (115)
                      ++|+.++++|+.+.++.+.   ..+||+++|+++||.+|+.+....+++++++++..+    ++|+.++|||+++|++++
T Consensus       107 ~~g~~~~~~~~~~~~~~~~---~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~  183 (211)
T cd00429         107 KAGVALNPGTPVEVLEPYL---DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLL  183 (211)
T ss_pred             eEEEEecCCCCHHHHHHHH---hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence            5799999999999899888   779999999999999999998888899998887643    589999999999999999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625           78 ASAGANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      .+.|+|++++||+||+.+||.+++++++
T Consensus       184 ~~~gad~iivgsai~~~~~~~~~~~~~~  211 (211)
T cd00429         184 AEAGADVLVAGSALFGSDDYAEAIKELR  211 (211)
T ss_pred             HHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence            9999999999999999999999988764

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.82  E-value=1.4e-19  Score=136.10  Aligned_cols=101  Identities=19%  Similarity=0.276  Sum_probs=88.7

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS   79 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~   79 (115)
                      +++|++++|+||.+.+++++   ...|.+++|+++||++ ++|.+...++++++|+..++.+++++||| |+++++.+.+
T Consensus       130 l~~~~~v~p~T~~e~l~~~~---~~~~~~l~msv~~~~g-~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~  205 (244)
T PRK13125        130 LKPVFFTSPKFPDLLIHRLS---KLSPLFIYYGLRPATG-VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS  205 (244)
T ss_pred             CCEEEEECCCCCHHHHHHHH---HhCCCEEEEEeCCCCC-CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH
Confidence            57999999999999999999   8899999999999995 58999999999999998767899999999 9999999999


Q ss_pred             cCCCEEEEcccccC---CCCHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFG---APEPAHVISLMR  105 (115)
Q Consensus        80 ~Gad~iv~Gsaif~---~~d~~~~~~~l~  105 (115)
                      +|||++|+||++|+   ..+..+..+.++
T Consensus       206 ~gaD~vvvGSai~~~~~~~~~~~~~~~~~  234 (244)
T PRK13125        206 AGADGVVVGTAFIEELEKNGVESALNLLK  234 (244)
T ss_pred             cCCCEEEECHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999996   344444444443

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.81  E-value=2.1e-19  Score=143.31  Aligned_cols=101  Identities=15%  Similarity=0.243  Sum_probs=91.8

Q ss_pred             CceEE-EecCCCCHHhHHHhHhCCCCCCEEEEEe-eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625            1 MRPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMT-VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA   78 (115)
Q Consensus         1 ~k~Gl-al~p~t~~~~~~~~~~~~~~vD~vlvm~-v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~   78 (115)
                      +++|+ ++||+||++.++++.   ..+|+|++|+ ++|+  +|   ...+++++++++...+++|++||||+.+|++++.
T Consensus       277 ikvgVD~lnp~tp~e~i~~l~---~~vD~Vllht~vdp~--~~---~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~  348 (391)
T PRK13307        277 IYSILDMLNVEDPVKLLESLK---VKPDVVELHRGIDEE--GT---EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEAL  348 (391)
T ss_pred             CEEEEEEcCCCCHHHHHHHhh---CCCCEEEEccccCCC--cc---cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHH
Confidence            47899 999999999999998   8999999997 8898  33   3466789999887778999999999999999999


Q ss_pred             HcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           79 SAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      ++|||++|+||+||+++||.++++++++.++
T Consensus       349 ~aGADivVVGsaIf~a~Dp~~aak~l~~~i~  379 (391)
T PRK13307        349 KAGADILVVGRAITKSKDVRRAAEDFLNKLK  379 (391)
T ss_pred             HcCCCEEEEeHHHhCCCCHHHHHHHHHHhhc
Confidence            9999999999999999999999999998875

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=99.81  E-value=3.3e-19  Score=129.92  Aligned_cols=101  Identities=19%  Similarity=0.311  Sum_probs=91.7

Q ss_pred             CceEEEe-cCCCCHHhHHHhHhCCC-CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625            1 MRPGVAL-KPGTSVEEVYPLVEGAN-PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA   78 (115)
Q Consensus         1 ~k~Glal-~p~t~~~~~~~~~~~~~-~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~   78 (115)
                      +++++++ +|.|+++.++.+.   . ++|||   +++|||++|.+.+..+++++++++..+.+++.++|||+.+|++++.
T Consensus       103 ~~~~~~~~~~~t~~~~~~~~~---~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~  176 (206)
T TIGR03128       103 KEVQVDLINVKDKVKRAKELK---ELGADYI---GVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVI  176 (206)
T ss_pred             CEEEEEecCCCChHHHHHHHH---HcCCCEE---EEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHH
Confidence            4688885 9999999888887   5 89988   4689999999998889999999988778889999999999999999


Q ss_pred             HcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           79 SAGANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      ++|+|++++||+||+++|+++.++++++.
T Consensus       177 ~~Ga~~v~vGsai~~~~d~~~~~~~l~~~  205 (206)
T TIGR03128       177 KLGPDIVIVGGAITKAADPAEAARQIRKL  205 (206)
T ss_pred             HcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence            99999999999999999999999999875

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=99.79  E-value=5e-19  Score=131.34  Aligned_cols=106  Identities=15%  Similarity=0.264  Sum_probs=96.5

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      ++|++++|.|+.+.++..++. +..|+++.|+++|+++||.|.+..+++++++++.  ++.+.|+|||++++++.+.+.|
T Consensus       108 ~~~V~llts~~~~~l~~~~~~-~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~--~~~i~V~gGI~~~~~~~~~~~~  184 (216)
T PRK13306        108 EIQIELYGNWTWEQAQQWRDA-GISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDM--GFKVSVTGGLVVEDLKLFKGIP  184 (216)
T ss_pred             EEEEEECCCCCHHHHHHHHcC-ChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcC--CCeEEEcCCCCHhhHHHHhcCC
Confidence            689999999999999876621 3789999999999999999999999999999763  5679999999999999999999


Q ss_pred             CCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           82 ANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        82 ad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ||++|+||+||+++||.++++++++.+++
T Consensus       185 ad~~VvGr~I~~a~dp~~a~~~i~~~i~~  213 (216)
T PRK13306        185 VKTFIAGRAIRGAADPAAAARAFKDEIAK  213 (216)
T ss_pred             CCEEEECCcccCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999998864

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=99.78  E-value=5.3e-20  Score=135.31  Aligned_cols=105  Identities=20%  Similarity=0.317  Sum_probs=91.7

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCChhh--HHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPST--IAEA   77 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI~~~n--i~~l   77 (115)
                      +++|++++|.+ .+.++.+.   +.+|.++.|+++||++||.|.+..+++++++++..+. +.+ +||||+.++  ++.+
T Consensus       107 ~~~~v~~~~~~-~~~~~~~~---~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~  181 (215)
T PRK13813        107 GKVFVVVEMSH-PGALEFIQ---PHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADA  181 (215)
T ss_pred             CeEEEEEeCCC-CCCCCCHH---HHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHH
Confidence            47899999986 55566666   6679999999999999999998889999999887643 556 999999985  9999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      .++|||++|+||+||+++||.+.++.+++.+++
T Consensus       182 ~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~  214 (215)
T PRK13813        182 IKAGADYVIVGRSIYNAADPREAAKAINEEIRG  214 (215)
T ss_pred             HHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988764

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.74  E-value=2.6e-17  Score=119.71  Aligned_cols=106  Identities=21%  Similarity=0.256  Sum_probs=90.5

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccch-hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMP-EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~-~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|++.  +|+.+..+.+.   .++|||.++++.|+.+++...+ ..+++++++++..+++|+.++||||.+|++.+.++
T Consensus       106 ~~g~~~--~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~  180 (212)
T PRK00043        106 IIGLST--HTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEA  180 (212)
T ss_pred             EEEEeC--CCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHc
Confidence            356654  47778777777   8999999999999987766543 34888999988776699999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      |+|++++||+||+++||.+.++++++.+++++
T Consensus       181 Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~~~  212 (212)
T PRK00043        181 GADGVAVVSAITGAEDPEAAARALLAAFRAAR  212 (212)
T ss_pred             CCCEEEEeHHhhcCCCHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999998877653

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=99.73  E-value=4.5e-17  Score=117.99  Aligned_cols=96  Identities=22%  Similarity=0.328  Sum_probs=80.4

Q ss_pred             CceEEE-ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625            1 MRPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA   78 (115)
Q Consensus         1 ~k~Gla-l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~   78 (115)
                      +++|++ ++|.|+.+..+.+.   ..+|++++   +|++.++.+ .+...++++++++. +++|+.++||||++|++++.
T Consensus       104 ~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~~~~i~~~~  176 (202)
T cd04726         104 KEVQVDLIGVEDPEKRAKLLK---LGVDIVIL---HRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGITPDTLPEFK  176 (202)
T ss_pred             CeEEEEEeCCCCHHHHHHHHH---CCCCEEEE---cCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCcCHHHHHHHH
Confidence            467886 99999999988444   58999886   566655555 46677888888876 57999999999999999999


Q ss_pred             HcCCCEEEEcccccCCCCHHHHHHH
Q 033625           79 SAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ++|||++++||+||+++||++.+++
T Consensus       177 ~~Gad~vvvGsai~~~~d~~~~~~~  201 (202)
T cd04726         177 KAGADIVIVGRAITGAADPAEAARE  201 (202)
T ss_pred             hcCCCEEEEeehhcCCCCHHHHHhc
Confidence            9999999999999999999888764

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=99.69  E-value=4.1e-16  Score=118.38  Aligned_cols=104  Identities=18%  Similarity=0.380  Sum_probs=88.6

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCC-EEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD-~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~   76 (115)
                      ++++++++|+|+.+.++++.   ...| +|.+|++. |++||.  |.+...++++++|+.. +.|+.++|||+ +++++.
T Consensus       141 l~~i~lv~P~T~~eri~~i~---~~~~gfiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~  215 (256)
T TIGR00262       141 VKPIFLVAPNADDERLKQIA---EKSQGFVYLVSRA-GVTGARNRAASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQ  215 (256)
T ss_pred             CcEEEEECCCCCHHHHHHHH---HhCCCCEEEEECC-CCCCCcccCChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH
Confidence            35789999999999999999   7777 99999997 999986  8889999999999874 67999999997 999999


Q ss_pred             HHHcCCCEEEEcccccC-----CCCHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFG-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~-----~~d~~~~~~~l~~~~~  109 (115)
                      +.+.|||++|+||++|+     +.++.+..+.+++.++
T Consensus       216 ~~~~GADgvVvGSaiv~~~~~~~~~~~~~~~~i~~~~~  253 (256)
T TIGR00262       216 AIDAGADGVIVGSAIVKIIEENLNTPEKMLQALEEFVQ  253 (256)
T ss_pred             HHHcCCCEEEECHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            99999999999999996     1255555566665544

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=99.69  E-value=3.6e-16  Score=117.59  Aligned_cols=88  Identities=18%  Similarity=0.305  Sum_probs=81.6

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCC-CCCEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGAN-PVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA   77 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~-~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l   77 (115)
                      ++++++++|.|+.+.+++++   . ..|+|.+|++.|++++|. |.+...++++++|+. .++||.++|||+ .++++.+
T Consensus       130 ~~~i~~i~P~T~~~~i~~i~---~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~  205 (242)
T cd04724         130 LDLIFLVAPTTPDERIKKIA---ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEV  205 (242)
T ss_pred             CcEEEEeCCCCCHHHHHHHH---hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHH
Confidence            46899999999999999999   6 799999999999999998 788889999999987 589999999999 6699999


Q ss_pred             HHcCCCEEEEcccccC
Q 033625           78 ASAGANCIVAGSSVFG   93 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~   93 (115)
                      .++ ||++|+||++|+
T Consensus       206 ~~~-ADgvVvGSaiv~  220 (242)
T cd04724         206 AKY-ADGVIVGSALVK  220 (242)
T ss_pred             Hcc-CCEEEECHHHHH
Confidence            999 999999999986

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=99.68  E-value=3.7e-16  Score=111.34  Aligned_cols=98  Identities=21%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|+++  +|+.+..+...   .++|||.++++.|+.+++.+ .+..+++++++++. .++|+.++|||+.+|+.++.++
T Consensus        97 ~~g~~~--~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi~~~~i~~~~~~  170 (196)
T cd00564          97 IIGVST--HSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGITPENAAEVLAA  170 (196)
T ss_pred             EEEeeC--CCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHc
Confidence            355554  46555444444   58999999999999998887 77888999998876 5799999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      |+|++++||++|+++|+.+++++++
T Consensus       171 Ga~~i~~g~~i~~~~~~~~~~~~l~  195 (196)
T cd00564         171 GADGVAVISAITGADDPAAAARELL  195 (196)
T ss_pred             CCCEEEEehHhhcCCCHHHHHHHHh
Confidence            9999999999999999999988875

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=99.62  E-value=5.2e-15  Score=109.71  Aligned_cols=102  Identities=22%  Similarity=0.305  Sum_probs=86.4

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      ++.+ .++..+...+  .++|||.+.++.|.-+...-.+..++.++++++.. ++|+.++||||++|++++.++|||+++
T Consensus       109 ~S~h-~~eea~~A~~--~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~-~iP~vAIGGi~~~nv~~v~~~Ga~gVA  184 (211)
T COG0352         109 LSTH-DLEEALEAEE--LGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV-NIPVVAIGGINLENVPEVLEAGADGVA  184 (211)
T ss_pred             eecC-CHHHHHHHHh--cCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHhCCCeEE
Confidence            3444 4444444331  45999999999999888777888999999998875 499999999999999999999999999


Q ss_pred             EcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           87 AGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      +.|+||.++|++.+++++++.++...
T Consensus       185 vvsai~~a~d~~~a~~~~~~~~~~~~  210 (211)
T COG0352         185 VVSAITSAADPAAAAKALRNALEDEK  210 (211)
T ss_pred             ehhHhhcCCCHHHHHHHHHHHHHhhc
Confidence            99999999999999999999987653

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=99.59  E-value=1.5e-14  Score=116.32  Aligned_cols=103  Identities=21%  Similarity=0.361  Sum_probs=88.4

Q ss_pred             ceEE-EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGV-ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Gl-al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++++ +++|.|+++.+..+.+  .++|||.   +.|||++|.+.+..++.++++++.. ++|+.++|||+.+|+.++.++
T Consensus       109 ~~~~g~~s~~t~~e~~~~a~~--~GaD~I~---~~pg~~~~~~~~~~~~~l~~l~~~~-~iPI~a~GGI~~~n~~~~l~a  182 (430)
T PRK07028        109 RLMADLINVPDPVKRAVELEE--LGVDYIN---VHVGIDQQMLGKDPLELLKEVSEEV-SIPIAVAGGLDAETAAKAVAA  182 (430)
T ss_pred             EEEEEecCCCCHHHHHHHHHh--cCCCEEE---EEeccchhhcCCChHHHHHHHHhhC-CCcEEEECCCCHHHHHHHHHc
Confidence            3455 4788898888777761  3799994   5799999888777888899988764 599999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      |||++++||+||+++||.+.++.+++.+++
T Consensus       183 GAdgv~vGsaI~~~~d~~~~~~~l~~~i~~  212 (430)
T PRK07028        183 GADIVIVGGNIIKSADVTEAARKIREAIDS  212 (430)
T ss_pred             CCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999988764

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=99.53  E-value=1.5e-13  Score=104.90  Aligned_cols=104  Identities=13%  Similarity=0.225  Sum_probs=84.4

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCC-EEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA   77 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD-~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l   77 (115)
                      .+...++|+|+.+.++.+.   ...+ ||.+|+ .+|++|+.  +.+...+.++++|+. .+.|+++++||+ +++++.+
T Consensus       146 ~~I~lv~PtT~~eri~~i~---~~a~gFIY~vS-~~GvTG~~~~~~~~~~~~i~~ir~~-t~~Pi~vGFGI~~~e~~~~~  220 (263)
T CHL00200        146 ELILLIAPTSSKSRIQKIA---RAAPGCIYLVS-TTGVTGLKTELDKKLKKLIETIKKM-TNKPIILGFGISTSEQIKQI  220 (263)
T ss_pred             CEEEEECCCCCHHHHHHHH---HhCCCcEEEEc-CCCCCCCCccccHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHH
Confidence            5678899999999999999   7777 999998 89999984  445556667777774 489999999999 9999999


Q ss_pred             HHcCCCEEEEcccc---cCCCCHHHHHHHHHHHHHH
Q 033625           78 ASAGANCIVAGSSV---FGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        78 ~~~Gad~iv~Gsai---f~~~d~~~~~~~l~~~~~~  110 (115)
                      .+.|||++|+||++   |.+.+.++..+++++.+++
T Consensus       221 ~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~~~~~  256 (263)
T CHL00200        221 KGWNINGIVIGSACVQILLGSSPEKGLDQLSEFCKV  256 (263)
T ss_pred             HhcCCCEEEECHHHHHHHHhcChhhHHHHHHHHHHH
Confidence            99999999999998   6544555555556655544

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.51  E-value=1.7e-13  Score=110.48  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=87.8

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-ccchhHHHHHHHHHhhC--------CCCcEEEEcCCChhhHH
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRY--------PSLDIEVDGGLGPSTIA   75 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~l~~~~--------~~~~i~~dGGI~~~ni~   75 (115)
                      |-++.++..|..+..-   .++|||.+.++.|..+.+ ...+..+++++++++..        .++|+.++|||+.+|++
T Consensus       303 IGvStHs~eEl~~A~~---~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~  379 (437)
T PRK12290        303 LGLSTHGYYELLRIVQ---IQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAE  379 (437)
T ss_pred             EEEecCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHH
Confidence            3455666666666555   689999999999998876 45677888888777654        27999999999999999


Q ss_pred             HHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           76 EAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        76 ~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      ++.++||+.+++.|+|++++||.+++++|++++...
T Consensus       380 ~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~~  415 (437)
T PRK12290        380 QVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAEN  415 (437)
T ss_pred             HHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999988753

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.46  E-value=9.3e-13  Score=97.48  Aligned_cols=102  Identities=14%  Similarity=0.118  Sum_probs=81.1

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      |.++.++..+..+..-   .++||+.+.++.|.-+... -.+..++.++++.+...++|+.+.|||+.+|+.++.++|++
T Consensus       105 iG~S~H~~~e~~~A~~---~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~  181 (211)
T PRK03512        105 LGVSTHDDMEIDVALA---ARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVG  181 (211)
T ss_pred             EEEeCCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCC
Confidence            3445566655444433   5899999999998866653 23346666777765544799999999999999999999999


Q ss_pred             EEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           84 CIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        84 ~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      ++++.|+||+++||.++++++++.+.
T Consensus       182 GiAvisai~~~~d~~~~~~~l~~~~~  207 (211)
T PRK03512        182 SIAVVSAITQAADWRAATAQLLELAE  207 (211)
T ss_pred             EEEEhhHhhCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999998765

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.45  E-value=1.1e-12  Score=97.81  Aligned_cols=97  Identities=11%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+..+...+..  ..++|||.+.++.+. +.....+..++.++++++.. ++|+.+.||||.+|++++.++||+++++.|
T Consensus       118 ~~s~~~a~~A~--~~gaDYv~~Gpv~t~-tK~~~~p~gl~~l~~~~~~~-~iPvvAIGGI~~~n~~~~~~~GA~giAvis  193 (221)
T PRK06512        118 LRDRHGAMEIG--ELRPDYLFFGKLGAD-NKPEAHPRNLSLAEWWAEMI-EIPCIVQAGSDLASAVEVAETGAEFVALER  193 (221)
T ss_pred             CCCHHHHHHhh--hcCCCEEEECCCCCC-CCCCCCCCChHHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence            34455443332  168999999999753 33334556777888877764 799999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHH
Q 033625           90 SVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        90 aif~~~d~~~~~~~l~~~~~~  110 (115)
                      +||+++||.+++++|++.++.
T Consensus       194 ai~~~~dp~~a~~~~~~~~~~  214 (221)
T PRK06512        194 AVFDAHDPPLAVAQANALLDE  214 (221)
T ss_pred             HhhCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998875

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.44  E-value=1.2e-12  Score=103.31  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      |..+.+++.+..+..-   .++|||.+.++.|.-+.....+..++.++++++.. ++|+.+.|||+++|+.++.++|+++
T Consensus       243 IG~S~Hs~~e~~~A~~---~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~-~iPv~AiGGI~~~ni~~l~~~Ga~g  318 (347)
T PRK02615        243 IGRSTTNPEEMAKAIA---EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA-PIPWFAIGGIDKSNIPEVLQAGAKR  318 (347)
T ss_pred             EEEecCCHHHHHHHHH---cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcCCcE
Confidence            4455566656555555   68999999999987665444466778888887764 6999999999999999999999999


Q ss_pred             EEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           85 IVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        85 iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ++++|+||+++||.++++++.+.+.+
T Consensus       319 VAvisaI~~a~dp~~~~~~l~~~l~~  344 (347)
T PRK02615        319 VAVVRAIMGAEDPKQATQELLKQLSR  344 (347)
T ss_pred             EEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999988765

>PRK07695 transcriptional regulator TenI; Provisional

Probab=99.43  E-value=1.9e-12  Score=94.48  Aligned_cols=87  Identities=17%  Similarity=0.246  Sum_probs=73.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      .++||+++..+.|..+.+...+..++.++++++.. ++|+.+.|||+++|+.++.++|+|++++||+||+++||.+++++
T Consensus       114 ~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~-~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~  192 (201)
T PRK07695        114 NGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL-SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKR  192 (201)
T ss_pred             cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHH
Confidence            58999988777776555444444567777777654 69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 033625          104 MRKSVEDA  111 (115)
Q Consensus       104 l~~~~~~~  111 (115)
                      +++.++.|
T Consensus       193 ~~~~~~~~  200 (201)
T PRK07695        193 YAESIKKW  200 (201)
T ss_pred             HHHHHhhc
Confidence            99988765

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=99.38  E-value=4.2e-12  Score=91.70  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      ..+.+|..+..+..-   .++||+.+.++.|.-+.... .+..++.++++++..+++|+.+.||||++|++++.++|+|+
T Consensus       100 g~s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~g  176 (196)
T TIGR00693       100 GVSTHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADG  176 (196)
T ss_pred             EEeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCE
Confidence            344555555444333   58999999888775332221 22356777777766567999999999999999999999999


Q ss_pred             EEEcccccCCCCHHHHHHHH
Q 033625           85 IVAGSSVFGAPEPAHVISLM  104 (115)
Q Consensus        85 iv~Gsaif~~~d~~~~~~~l  104 (115)
                      +++||+||+++||.+.+++|
T Consensus       177 va~~~~i~~~~dp~~~~~~l  196 (196)
T TIGR00693       177 VAVVSAIMQAADPKAAAKQL  196 (196)
T ss_pred             EEEhHHhhCCCCHHHHHHhC
Confidence            99999999999999887753

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=99.35  E-value=1.3e-11  Score=101.08  Aligned_cols=106  Identities=15%  Similarity=0.134  Sum_probs=87.6

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC--
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN--   83 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad--   83 (115)
                      .++.+|..+..+..-   .++|||.+.++.|..+.....+..++.++++.+.. ++|+.+.|||+.+|++++.++|++  
T Consensus       394 G~S~h~~~e~~~a~~---~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~-~~Pv~aiGGI~~~~~~~~~~~G~~~~  469 (502)
T PLN02898        394 GVSCKTPEQAEQAWK---DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS-KLPVVAIGGISASNAASVMESGAPNL  469 (502)
T ss_pred             EEeCCCHHHHHHHhh---cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC-CCCEEEECCCCHHHHHHHHHcCCCcC
Confidence            344567766555555   79999999999997665444455677888887653 799999999999999999999999  


Q ss_pred             -EEEEcccccCCCCHHHHHHHHHHHHHHHhhcC
Q 033625           84 -CIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS  115 (115)
Q Consensus        84 -~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~~~  115 (115)
                       +++++|+||+++||.+.++++++.+.+..|.|
T Consensus       470 ~gvav~~~i~~~~d~~~~~~~~~~~~~~~~~~~  502 (502)
T PLN02898        470 KGVAVVSALFDQEDVLKATRKLHAILTEALSES  502 (502)
T ss_pred             ceEEEEeHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence             99999999999999999999999988766654

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=99.29  E-value=3.3e-11  Score=89.02  Aligned_cols=92  Identities=20%  Similarity=0.246  Sum_probs=73.5

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      .....|+-|..+.+-   .++|||.+   +|.   ..+   ..+.++++++..+ ++|+.+.||||.+|++++.++|+|.
T Consensus       108 ~~G~~t~~E~~~A~~---~Gad~vk~---Fpa---~~~---G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~  175 (206)
T PRK09140        108 MPGVATPTEAFAALR---AGAQALKL---FPA---SQL---GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAG  175 (206)
T ss_pred             EcccCCHHHHHHHHH---cCCCEEEE---CCC---CCC---CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeE
Confidence            445778877777766   78999985   452   222   3566777777775 6999999999999999999999999


Q ss_pred             EEEcccccCC----CCHHHHHHHHHHHHH
Q 033625           85 IVAGSSVFGA----PEPAHVISLMRKSVE  109 (115)
Q Consensus        85 iv~Gsaif~~----~d~~~~~~~l~~~~~  109 (115)
                      ++++|+||++    +++++.++++++.++
T Consensus       176 vav~s~l~~~~~~~~~i~~~a~~~~~~~~  204 (206)
T PRK09140        176 FGLGSALYRPGQSAEEVAERARAFVAAYR  204 (206)
T ss_pred             EEEehHhcccccChHHHHHHHHHHHHHHh
Confidence            9999999986    678888888877665

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=99.28  E-value=3.8e-11  Score=89.08  Aligned_cols=97  Identities=21%  Similarity=0.378  Sum_probs=77.3

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc----cchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK----FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA   82 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~----~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga   82 (115)
                      +|..||.+..+.+-+  -++||+.   +|-|.+-|.    +..+.+++++++...  .+++.|.|||++++++.+...|+
T Consensus       114 ~~~~~~~~~~~~l~~--~gvd~~~---~H~g~D~q~~G~~~~~~~l~~ik~~~~~--g~~vAVaGGI~~~~i~~~~~~~~  186 (217)
T COG0269         114 IGVWDPEQRAKWLKE--LGVDQVI---LHRGRDAQAAGKSWGEDDLEKIKKLSDL--GAKVAVAGGITPEDIPLFKGIGA  186 (217)
T ss_pred             ecCCCHHHHHHHHHH--hCCCEEE---EEecccHhhcCCCccHHHHHHHHHhhcc--CceEEEecCCCHHHHHHHhcCCC
Confidence            456677776666541  4799997   788887664    333445555555443  48999999999999999999999


Q ss_pred             CEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        83 d~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ++||+|++|.++.||.++++.+++.++.
T Consensus       187 ~ivIvGraIt~a~dp~~~a~~~~~~i~~  214 (217)
T COG0269         187 DIVIVGRAITGAKDPAEAARKFKEEIDK  214 (217)
T ss_pred             CEEEECchhcCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999998854

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=99.21  E-value=1.1e-10  Score=99.79  Aligned_cols=87  Identities=16%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             CCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCC--CCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~--~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ++||+.+.++.|.-+...-. +-.++.++++++...  ++|+.+.|||+.+|++++.++|++++++.|+||+++||.+++
T Consensus       128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~  207 (755)
T PRK09517        128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAA  207 (755)
T ss_pred             CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHH
Confidence            48999999999986664433 346778888877764  499999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 033625          102 SLMRKSVEDA  111 (115)
Q Consensus       102 ~~l~~~~~~~  111 (115)
                      +++++.++..
T Consensus       208 ~~l~~~~~~~  217 (755)
T PRK09517        208 RELRTAFQPT  217 (755)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=99.14  E-value=2e-10  Score=87.90  Aligned_cols=79  Identities=22%  Similarity=0.362  Sum_probs=62.3

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      ..+.+.++|+.|..+.+.   .++|||+++++.|         +.+.+ ++.+++. +++|++++||||++|+.++.++|
T Consensus       182 ~~I~vev~t~eea~~A~~---~gaD~I~ld~~~~---------e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~G  248 (269)
T cd01568         182 KKIEVEVETLEEAEEALE---AGADIIMLDNMSP---------EELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETG  248 (269)
T ss_pred             CeEEEecCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcC
Confidence            357888999988888887   8899999977666         33333 2233333 57999999999999999999999


Q ss_pred             CCEEEEcccccCC
Q 033625           82 ANCIVAGSSVFGA   94 (115)
Q Consensus        82 ad~iv~Gsaif~~   94 (115)
                      +|++++|+..++.
T Consensus       249 ad~Isvgal~~s~  261 (269)
T cd01568         249 VDVISTGALTHSA  261 (269)
T ss_pred             CCEEEEcHHHcCC
Confidence            9999997666654

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.12  E-value=8.6e-10  Score=84.72  Aligned_cols=97  Identities=18%  Similarity=0.238  Sum_probs=76.2

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc------------------------c---c---chhHHHHHHHHHhhC
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ------------------------K---F---MPEMMDKVRSLRNRY   58 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq------------------------~---~---~~~~~~ki~~l~~~~   58 (115)
                      ..|--|.+..+-   .++|+|.  +.--||+|.                        .   +   ....++.|+++++..
T Consensus       119 ~stleEal~a~~---~Gad~I~--TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~  193 (283)
T cd04727         119 ARNLGEALRRIS---EGAAMIR--TKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG  193 (283)
T ss_pred             CCCHHHHHHHHH---CCCCEEE--ecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence            444456666666   7899985  444466665                        1   1   223567788887764


Q ss_pred             CCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           59 PSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        59 ~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                       ++|+.  +.||| |++|+.++.++|||.+++||+||+++||.+.+++|++.+..+
T Consensus       194 -~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~  248 (283)
T cd04727         194 -RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHY  248 (283)
T ss_pred             -CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence             58997  99999 999999999999999999999999999999999999988754

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.12  E-value=4.9e-10  Score=83.24  Aligned_cols=89  Identities=19%  Similarity=0.236  Sum_probs=69.7

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ..||-|..+.+-   .++|||.+   +|.   ..+   ..+.++.++...+++|+.+.||||.+|+.++.++|++.+++|
T Consensus       116 ~~T~~E~~~A~~---~Gad~vkl---FPa---~~~---G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavg  183 (213)
T PRK06552        116 CMTVTEIVTALE---AGSEIVKL---FPG---STL---GPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIG  183 (213)
T ss_pred             cCCHHHHHHHHH---cCCCEEEE---CCc---ccC---CHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEc
Confidence            346767777766   79999986   552   122   345578888888889999999999999999999999999999


Q ss_pred             ccccCC------CCHHHHHHHHHHHHH
Q 033625           89 SSVFGA------PEPAHVISLMRKSVE  109 (115)
Q Consensus        89 saif~~------~d~~~~~~~l~~~~~  109 (115)
                      |.++..      +++.+.++++.+.++
T Consensus       184 s~l~~~~~~~~~~~i~~~a~~~~~~~~  210 (213)
T PRK06552        184 GELNKLASQGDFDLITEKAKKYMSSLR  210 (213)
T ss_pred             hHHhCccccCCHHHHHHHHHHHHHHHH
Confidence            999976      356677777766554

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=99.09  E-value=1.2e-09  Score=84.05  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-------------------------------ccchhHHHHHHHH
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-------------------------------KFMPEMMDKVRSL   54 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-------------------------------~~~~~~~~ki~~l   54 (115)
                      .....|--|.+..+-   .++|+|-  +.--||+|.                               +-....++.|+++
T Consensus       118 mad~~~l~EAlrai~---~GadmI~--Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei  192 (287)
T TIGR00343       118 VCGARDLGEALRRIN---EGAAMIR--TKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEV  192 (287)
T ss_pred             EccCCCHHHHHHHHH---CCCCEEe--ccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHH
Confidence            344555567777776   7899885  443455554                               0012456777777


Q ss_pred             HhhCCCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           55 RNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        55 ~~~~~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      ++.. ++|+.  +.||| |++++..+.++|+|.+++||+||+++||.+.+++|.+.+..+
T Consensus       193 ~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~~  251 (287)
T TIGR00343       193 LKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHY  251 (287)
T ss_pred             HHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence            7754 69998  99999 999999999999999999999999999999999999887654

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=99.08  E-value=5.7e-10  Score=80.21  Aligned_cols=82  Identities=20%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      ..+.++..|..+..-   .++||+.+.+++|..+.....+..++.++++++.. ++|+.+.|||+++|++++.++|++++
T Consensus        99 g~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~-~~pv~AlGGI~~~~i~~l~~~Ga~gv  174 (180)
T PF02581_consen   99 GASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS-PIPVYALGGITPENIPELREAGADGV  174 (180)
T ss_dssp             EEEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT-SSCEEEESS--TTTHHHHHHTT-SEE
T ss_pred             EeecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHhC-CCCEEEEcCCCHHHHHHHHHcCCCEE
Confidence            344566666444444   68999999999998877766778889999998876 59999999999999999999999999


Q ss_pred             EEcccc
Q 033625           86 VAGSSV   91 (115)
Q Consensus        86 v~Gsai   91 (115)
                      ++.|+|
T Consensus       175 Avi~aI  180 (180)
T PF02581_consen  175 AVISAI  180 (180)
T ss_dssp             EESHHH
T ss_pred             EEEeeC
Confidence            999876

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.07  E-value=1.1e-09  Score=79.71  Aligned_cols=77  Identities=19%  Similarity=0.118  Sum_probs=63.2

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      +..+|+-|..+..-   .++|||.+   +|.-   .  ....+.++++++..+++|+.+.||||++|++++.++|++.+.
T Consensus       110 ~G~~t~~e~~~A~~---~Gadyv~~---Fpt~---~--~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~va  178 (187)
T PRK07455        110 PGALTPTEIVTAWQ---AGASCVKV---FPVQ---A--VGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVG  178 (187)
T ss_pred             cCcCCHHHHHHHHH---CCCCEEEE---CcCC---c--ccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEE
Confidence            34678888777776   79999986   6641   1  234566888888777899999999999999999999999999


Q ss_pred             EcccccCC
Q 033625           87 AGSSVFGA   94 (115)
Q Consensus        87 ~Gsaif~~   94 (115)
                      ++|+||+.
T Consensus       179 v~s~i~~~  186 (187)
T PRK07455        179 LSGQLFPK  186 (187)
T ss_pred             EehhcccC
Confidence            99999975

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.03  E-value=2.3e-09  Score=82.65  Aligned_cols=99  Identities=15%  Similarity=0.219  Sum_probs=75.5

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEee------------------------eCCCCCcc------cchhHHHHHHHHHh
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTV------------------------EPGFGGQK------FMPEMMDKVRSLRN   56 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v------------------------~pG~~gq~------~~~~~~~ki~~l~~   56 (115)
                      ....|--|.+...-   .++|+|-  +.                        --||+...      .....++.|+++++
T Consensus       126 ad~~~l~EAlrai~---~GadmI~--Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~  200 (293)
T PRK04180        126 CGARNLGEALRRIA---EGAAMIR--TKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAE  200 (293)
T ss_pred             ccCCCHHHHHHHHH---CCCCeee--ccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHH
Confidence            34455556777766   7889884  33                        23443322      12345667777777


Q ss_pred             hCCCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           57 RYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        57 ~~~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      .. ++|+.  +.||| |++++..+.++|+|.+++||+||+++||.+.+++|.+.+..+
T Consensus       201 ~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~  257 (293)
T PRK04180        201 LG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY  257 (293)
T ss_pred             hC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence            54 68998  99999 999999999999999999999999999999999999887654

>PRK08999 hypothetical protein; Provisional

Probab=98.97  E-value=3.5e-09  Score=81.54  Aligned_cols=83  Identities=22%  Similarity=0.227  Sum_probs=65.1

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      .++.+|..+..+..-   .++||+.+.++.|.-+.....+-.++.++++++.. ++|+.+.||||.+|++++.++|++++
T Consensus       230 g~S~h~~~~~~~a~~---~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~-~~Pv~AiGGI~~~~~~~~~~~g~~gv  305 (312)
T PRK08999        230 AASCHDAEELARAQR---LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV-PLPVYALGGLGPGDLEEAREHGAQGI  305 (312)
T ss_pred             EEecCCHHHHHHHHh---cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHhCCCEE
Confidence            344566555444333   57999999999987665444456677888887764 79999999999999999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      ++.|+||
T Consensus       306 a~i~~~~  312 (312)
T PRK08999        306 AGIRGLW  312 (312)
T ss_pred             EEEEEeC
Confidence            9999986

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.96  E-value=4.1e-09  Score=81.51  Aligned_cols=79  Identities=19%  Similarity=0.369  Sum_probs=60.5

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +.+..+|..|..+.+-   .++|||++-         +|.++.+.+ ++.+++.++++++++.||||.+|++++.++|+|
T Consensus       199 I~VEv~tleea~eA~~---~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD  266 (288)
T PRK07428        199 IEVETETLEQVQEALE---YGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVD  266 (288)
T ss_pred             EEEECCCHHHHHHHHH---cCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCC
Confidence            4455666666666655   789999976         444555555 333444467899999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      ++++|+.+++++
T Consensus       267 ~Isvgsl~~sa~  278 (288)
T PRK07428        267 YISSSAPITRSP  278 (288)
T ss_pred             EEEEchhhhCCC
Confidence            999999998665

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=98.94  E-value=5.6e-09  Score=75.72  Aligned_cols=76  Identities=20%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      .....|+-|..+..-   .++|||.+   +|.      .+...+.++++++..+++|+.+.||||++|+.++.++|+|.+
T Consensus       101 i~gv~t~~e~~~A~~---~Gad~i~~---~p~------~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v  168 (190)
T cd00452         101 LPGVATPTEIMQALE---LGADIVKL---FPA------EAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAV  168 (190)
T ss_pred             ECCcCCHHHHHHHHH---CCCCEEEE---cCC------cccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEE
Confidence            344556666666655   78999986   442      112455677777777789999999999999999999999999


Q ss_pred             EEcccccC
Q 033625           86 VAGSSVFG   93 (115)
Q Consensus        86 v~Gsaif~   93 (115)
                      +++|.+|+
T Consensus       169 ~v~s~i~~  176 (190)
T cd00452         169 GGGSLLPK  176 (190)
T ss_pred             EEchhcch
Confidence            99999993

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.91  E-value=6.1e-09  Score=79.73  Aligned_cols=76  Identities=17%  Similarity=0.269  Sum_probs=56.3

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      |.+..+|..+..+..-   .++|||++.++.            .+.++++.+..+ ++|+++.||||++|++++.++|+|
T Consensus       185 Igvev~s~eea~~A~~---~gaDyI~ld~~~------------~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd  249 (268)
T cd01572         185 IEVEVETLEQLKEALE---AGADIIMLDNMS------------PEELREAVALLKGRVLLEASGGITLENIRAYAETGVD  249 (268)
T ss_pred             EEEEECCHHHHHHHHH---cCCCEEEECCcC------------HHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCC
Confidence            4445566655555544   689999985443            244555555433 699999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      ++++||..++++
T Consensus       250 ~Iav~sl~~~a~  261 (268)
T cd01572         250 YISVGALTHSAP  261 (268)
T ss_pred             EEEEEeeecCCC
Confidence            999999877543

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=98.84  E-value=1.3e-08  Score=78.17  Aligned_cols=77  Identities=21%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +-+..+|..+..+..-   .++|||++..+.|+         .++. ++.+++..+++|+++.||||++|+.++.++|+|
T Consensus       186 IgVev~t~eea~~A~~---~gaD~I~ld~~~p~---------~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd  253 (272)
T cd01573         186 IVVEVDSLEEALAAAE---AGADILQLDKFSPE---------ELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGAD  253 (272)
T ss_pred             EEEEcCCHHHHHHHHH---cCCCEEEECCCCHH---------HHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCc
Confidence            3455667666666655   78999998776663         2233 333444446899999999999999999999999


Q ss_pred             EEEEcccccCC
Q 033625           84 CIVAGSSVFGA   94 (115)
Q Consensus        84 ~iv~Gsaif~~   94 (115)
                      +++ .|+|+.+
T Consensus       254 ~I~-vsai~~a  263 (272)
T cd01573         254 ILV-TSAPYYA  263 (272)
T ss_pred             EEE-EChhhcC
Confidence            994 4555544

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.81  E-value=3.1e-08  Score=76.27  Aligned_cols=76  Identities=12%  Similarity=0.235  Sum_probs=55.6

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      |.+..+|..+..+..-   .++|||++.         .+.++.   ++++++.. +++++++.||||.+|++++.++|+|
T Consensus       191 Igvsv~tleea~~A~~---~gaDyI~lD---------~~~~e~---l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd  255 (277)
T PRK08072        191 IEVETETEEQVREAVA---AGADIIMFD---------NRTPDE---IREFVKLVPSAIVTEASGGITLENLPAYGGTGVD  255 (277)
T ss_pred             EEEEeCCHHHHHHHHH---cCCCEEEEC---------CCCHHH---HHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCC
Confidence            3455566666666655   789999872         244444   55554432 3588999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      ++++|+..++++
T Consensus       256 ~IAvg~l~~sa~  267 (277)
T PRK08072        256 YISLGFLTHSVK  267 (277)
T ss_pred             EEEEChhhcCCc
Confidence            999999776543

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=98.80  E-value=5.2e-08  Score=71.62  Aligned_cols=85  Identities=18%  Similarity=0.329  Sum_probs=63.9

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      .+.++...+  ..+|++.+-    +.+++.+.+. ++.++++++.. .+.|+.+.|||+ ++++..+.++|||.+++||+
T Consensus       131 ~~e~~~~~~--~g~~~i~~t----~~~~~~~~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsa  203 (217)
T cd00331         131 EEELERALA--LGAKIIGIN----NRDLKTFEVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGES  203 (217)
T ss_pred             HHHHHHHHH--cCCCEEEEe----CCCccccCcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHH
Confidence            344444441  478999643    4444445433 37778887765 468999999996 49999999999999999999


Q ss_pred             ccCCCCHHHHHHHH
Q 033625           91 VFGAPEPAHVISLM  104 (115)
Q Consensus        91 if~~~d~~~~~~~l  104 (115)
                      |++..||.+.+++|
T Consensus       204 i~~~~~p~~~~~~~  217 (217)
T cd00331         204 LMRAPDPGAALREL  217 (217)
T ss_pred             HcCCCCHHHHHHhC
Confidence            99999998887653

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.80  E-value=2.9e-08  Score=75.15  Aligned_cols=75  Identities=23%  Similarity=0.369  Sum_probs=61.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-------hhhHHHHHHcCCCEEEEcccccCCCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-------~~ni~~l~~~Gad~iv~Gsaif~~~d   96 (115)
                      .++|||-.     +|.+      .++.++++.+.. .+|+.+.|||+       .+|++++.++||+++++|++||+++|
T Consensus       168 ~GADyikt-----~~~~------~~~~l~~~~~~~-~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d  235 (258)
T TIGR01949       168 LGADIVKT-----PYTG------DIDSFRDVVKGC-PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD  235 (258)
T ss_pred             HCCCEEec-----cCCC------CHHHHHHHHHhC-CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence            58999974     1221      345566665543 58999999999       88999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033625           97 PAHVISLMRKSVED  110 (115)
Q Consensus        97 ~~~~~~~l~~~~~~  110 (115)
                      |.+++++|++.+++
T Consensus       236 p~~~~~~l~~~i~~  249 (258)
T TIGR01949       236 PVGITKAVCKIVHE  249 (258)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998874

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=98.78  E-value=2.7e-08  Score=76.06  Aligned_cols=73  Identities=14%  Similarity=0.256  Sum_probs=53.3

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +.+..+|..+..+..-   .++|||++.++.|         +.   ++++.+.. ..+|+++.||||++|++++.++|+|
T Consensus       181 Igvev~t~eea~~A~~---~gaDyI~ld~~~~---------e~---lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd  245 (265)
T TIGR00078       181 IEVEVESLEEAEEAAE---AGADIIMLDNMKP---------EE---IKEAVQLLKGRVLLEASGGITLDNLEEYAETGVD  245 (265)
T ss_pred             EEEEeCCHHHHHHHHH---cCCCEEEECCCCH---------HH---HHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCC
Confidence            4455567766666655   7899999855444         33   44443332 2489999999999999999999999


Q ss_pred             EEEEcccccC
Q 033625           84 CIVAGSSVFG   93 (115)
Q Consensus        84 ~iv~Gsaif~   93 (115)
                      ++++ |+++.
T Consensus       246 ~Isv-gait~  254 (265)
T TIGR00078       246 VISS-GALTH  254 (265)
T ss_pred             EEEe-CHHHc
Confidence            9999 55554

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=98.78  E-value=1.8e-08  Score=72.47  Aligned_cols=80  Identities=26%  Similarity=0.443  Sum_probs=56.3

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      +.+...+..+..+.+-   .++|.|++-...|.        +.-+-+++++...+++.|++.||||++|+.++.+.|+|+
T Consensus        83 I~VEv~~~ee~~ea~~---~g~d~I~lD~~~~~--------~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~  151 (169)
T PF01729_consen   83 IEVEVENLEEAEEALE---AGADIIMLDNMSPE--------DLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDV  151 (169)
T ss_dssp             EEEEESSHHHHHHHHH---TT-SEEEEES-CHH--------HHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SE
T ss_pred             EEEEcCCHHHHHHHHH---hCCCEEEecCcCHH--------HHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCE
Confidence            4445555444444444   68999998766552        222335556666778999999999999999999999999


Q ss_pred             EEEcccccCCC
Q 033625           85 IVAGSSVFGAP   95 (115)
Q Consensus        85 iv~Gsaif~~~   95 (115)
                      +++||.+.+++
T Consensus       152 isvg~~~~~a~  162 (169)
T PF01729_consen  152 ISVGSLTHSAP  162 (169)
T ss_dssp             EEECHHHHSBE
T ss_pred             EEcChhhcCCc
Confidence            99999877654

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=98.76  E-value=4.5e-08  Score=75.48  Aligned_cols=89  Identities=16%  Similarity=0.269  Sum_probs=69.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCIV   86 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~iv   86 (115)
                      |..+....+.+. .++||+.+  .++++.+.+  ..+-.+++|+++++.. ++|+++.|  ||+.++++.+.++|++.+.
T Consensus       153 t~~eea~~f~~~-tg~DyLAvaiG~~hg~~~~--~~~l~~~~L~~i~~~~-~iPlV~hG~SGI~~e~~~~~i~~G~~kin  228 (281)
T PRK06806        153 TSTTEAKRFAEE-TDVDALAVAIGNAHGMYNG--DPNLRFDRLQEINDVV-HIPLVLHGGSGISPEDFKKCIQHGIRKIN  228 (281)
T ss_pred             CCHHHHHHHHHh-hCCCEEEEccCCCCCCCCC--CCccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence            444444554422 48999999  999997743  2345777888888764 79999999  9999999999999999999


Q ss_pred             EcccccCCCCHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~  105 (115)
                      ++|+|+.  ++.++++++.
T Consensus       229 v~T~i~~--a~~~a~~~~~  245 (281)
T PRK06806        229 VATATFN--SVITAVNNLV  245 (281)
T ss_pred             EhHHHHH--HHHHHHHHHH
Confidence            9999996  5777776654

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=98.75  E-value=6e-08  Score=72.03  Aligned_cols=73  Identities=18%  Similarity=0.401  Sum_probs=59.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-------hhHHHHHHcCCCEEEEcccccCCCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-------~ni~~l~~~Gad~iv~Gsaif~~~d   96 (115)
                      .++|||-+   .  +.+      .++.++++.+.. ++|+.+.||++.       +|++++.++||+.+++|++||+++|
T Consensus       155 ~GaD~Ik~---~--~~~------~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d  222 (235)
T cd00958         155 LGADIVKT---K--YTG------DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD  222 (235)
T ss_pred             HCCCEEEe---c--CCC------CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence            48999976   1  221      345567666654 588999999865       7799999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 033625           97 PAHVISLMRKSV  108 (115)
Q Consensus        97 ~~~~~~~l~~~~  108 (115)
                      |.+.++++++++
T Consensus       223 p~~~~~~~~~~~  234 (235)
T cd00958         223 PVAMLRAISAVV  234 (235)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999865

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.72  E-value=8.6e-08  Score=73.82  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=53.6

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      |-+..+|..+..+.+-   .++|||++-         +|.++.+   +++.+.. +++|+++.||||++|++++.++|+|
T Consensus       192 I~VEv~tleea~eA~~---~gaD~I~LD---------~~~~e~l---~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD  256 (277)
T PRK05742        192 VEVEVESLDELRQALA---AGADIVMLD---------ELSLDDM---REAVRLTAGRAKLEASGGINESTLRVIAETGVD  256 (277)
T ss_pred             EEEEeCCHHHHHHHHH---cCCCEEEEC---------CCCHHHH---HHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCC
Confidence            3344556444444433   689999763         2344444   4443332 5799999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      ++++|+..++++
T Consensus       257 ~Isvg~lt~s~~  268 (277)
T PRK05742        257 YISIGAMTKDVK  268 (277)
T ss_pred             EEEEChhhcCCc
Confidence            999999877654

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=98.71  E-value=6.9e-08  Score=70.47  Aligned_cols=81  Identities=23%  Similarity=0.314  Sum_probs=57.9

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC---CCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF---GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-   81 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~---~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-   81 (115)
                      .++.++..+....+-   ..+||+++-+-.++.   +|+.+..+.   +++++   ..+|+.+.||||++|+.++.+.+ 
T Consensus       104 ~~~~~~~~~~~~~~~---~~aD~il~dt~~~~~~Gg~g~~~~~~~---l~~~~---~~~PvilaGGI~~~Nv~~~i~~~~  174 (203)
T cd00405         104 RVKDEEDLEKAAAYA---GEVDAILLDSKSGGGGGGTGKTFDWSL---LRGLA---SRKPVILAGGLTPDNVAEAIRLVR  174 (203)
T ss_pred             ecCChhhHHHhhhcc---ccCCEEEEcCCCCCCCCCCcceEChHH---hhccc---cCCCEEEECCCChHHHHHHHHhcC
Confidence            333444444444544   689999886654432   456665444   44443   36899999999999999999999 


Q ss_pred             CCEEEEcccccCCC
Q 033625           82 ANCIVAGSSVFGAP   95 (115)
Q Consensus        82 ad~iv~Gsaif~~~   95 (115)
                      ++.+.++|+++.++
T Consensus       175 ~~gvdv~S~ie~~p  188 (203)
T cd00405         175 PYGVDVSSGVETSP  188 (203)
T ss_pred             CCEEEcCCcccCCC
Confidence            99999999999763

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=98.67  E-value=3.2e-07  Score=69.84  Aligned_cols=78  Identities=18%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      .++|+|.+   ++ .+-+.|.++ ++...++.+..|+ .++.+.||| |++++..+.++|+|.+++||+|.+++||.+.+
T Consensus       179 ~gadiIgi---n~-rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~  253 (260)
T PRK00278        179 LGAPLIGI---NN-RNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAAL  253 (260)
T ss_pred             cCCCEEEE---CC-CCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHH
Confidence            58998874   42 222344333 5667777766654 577788888 79999999999999999999999999999998


Q ss_pred             HHHHH
Q 033625          102 SLMRK  106 (115)
Q Consensus       102 ~~l~~  106 (115)
                      ++|..
T Consensus       254 ~~l~~  258 (260)
T PRK00278        254 RELLG  258 (260)
T ss_pred             HHHhc
Confidence            87753

>PRK00208 thiG thiazole synthase; Reviewed

Probab=98.67  E-value=4.5e-07  Score=68.78  Aligned_cols=83  Identities=22%  Similarity=0.382  Sum_probs=65.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      -+.|+|+-++-.-| +|+....  .+.++.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||...++
T Consensus       143 ~G~~~vmPlg~pIG-sg~gi~~--~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~  218 (250)
T PRK00208        143 AGCAAVMPLGAPIG-SGLGLLN--PYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMAR  218 (250)
T ss_pred             cCCCEeCCCCcCCC-CCCCCCC--HHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHH
Confidence            47888843334445 5555422  3446667665 579999999995 89999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      +++..++.
T Consensus       219 af~~Av~a  226 (250)
T PRK00208        219 AFKLAVEA  226 (250)
T ss_pred             HHHHHHHH
Confidence            99988764

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=98.65  E-value=5.3e-07  Score=68.31  Aligned_cols=83  Identities=24%  Similarity=0.420  Sum_probs=65.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      -+.|+|+-+.-.-| +|+....  .+.|+.+++. .++|+.++|||+ ++.+....+.|+|.++++|+|.+++||...++
T Consensus       143 ~G~~~vmPlg~pIG-sg~Gi~~--~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~  218 (248)
T cd04728         143 AGCAAVMPLGSPIG-SGQGLLN--PYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMAR  218 (248)
T ss_pred             cCCCEeCCCCcCCC-CCCCCCC--HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHH
Confidence            47888844334445 4554422  4456677666 579999999995 89999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       219 af~~Av~a  226 (248)
T cd04728         219 AFKLAVEA  226 (248)
T ss_pred             HHHHHHHH
Confidence            99988764

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.64  E-value=1.6e-07  Score=71.53  Aligned_cols=75  Identities=20%  Similarity=0.383  Sum_probs=58.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhh-------HHHHHHcCCCEEEEcccccCCCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~n-------i~~l~~~Gad~iv~Gsaif~~~d   96 (115)
                      .++|||=     +.|.+      ..+.++++.+.. .+|+.+.|||+.+|       +.++.++||+++++|++||+.+|
T Consensus       172 ~GAD~vK-----t~~~~------~~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~  239 (267)
T PRK07226        172 LGADIVK-----TNYTG------DPESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED  239 (267)
T ss_pred             HCCCEEe-----eCCCC------CHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence            4788882     22332      234455555432 59999999999886       77788999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033625           97 PAHVISLMRKSVED  110 (115)
Q Consensus        97 ~~~~~~~l~~~~~~  110 (115)
                      |.+.+++|+.++++
T Consensus       240 p~~~~~~l~~~v~~  253 (267)
T PRK07226        240 PEAITRAISAVVHE  253 (267)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998864

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=98.61  E-value=2.9e-07  Score=67.92  Aligned_cols=87  Identities=16%  Similarity=0.242  Sum_probs=61.4

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN   83 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad   83 (115)
                      .++.|+-+.....-   .++||+.+-  +-|+++..  .....++.++++++.. ++|+.+.||| +++++..+.+.|||
T Consensus       128 v~v~t~~ea~~a~~---~G~d~i~~~--~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~Gad  201 (219)
T cd04729         128 ADISTLEEALNAAK---LGFDIIGTT--LSGYTEETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGAD  201 (219)
T ss_pred             EECCCHHHHHHHHH---cCCCEEEcc--CccccccccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCC
Confidence            34555555444333   589998431  22443321  1223456777777765 7999999999 69999999999999


Q ss_pred             EEEEcccccCCCCHHH
Q 033625           84 CIVAGSSVFGAPEPAH   99 (115)
Q Consensus        84 ~iv~Gsaif~~~d~~~   99 (115)
                      .+.+||+|++.+|+..
T Consensus       202 gV~vGsal~~~~~~~~  217 (219)
T cd04729         202 AVVVGSAITRPEHITG  217 (219)
T ss_pred             EEEEchHHhChHhHhh
Confidence            9999999999888753

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=98.58  E-value=5.4e-07  Score=66.52  Aligned_cols=79  Identities=19%  Similarity=0.255  Sum_probs=58.8

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      +.++.+.+  ..+|++.+.+..+|..+..+....++.++++++.. ++|+.+.|||+. +|+.++.+.|+|.+++||+++
T Consensus       113 ~~~~~~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~  189 (236)
T cd04730         113 EEARKAEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFL  189 (236)
T ss_pred             HHHHHHHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence            44454442  46899988766554433343334567778777654 689999999997 999999999999999999998


Q ss_pred             CCC
Q 033625           93 GAP   95 (115)
Q Consensus        93 ~~~   95 (115)
                      +..
T Consensus       190 ~~~  192 (236)
T cd04730         190 ATE  192 (236)
T ss_pred             cCc
Confidence            754

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.57  E-value=2.4e-07  Score=71.74  Aligned_cols=79  Identities=23%  Similarity=0.288  Sum_probs=56.8

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +.+-.+|..|..+.+-   .++|.|++-         +|.++.+++ +..+++.++++.+++.||||++|++++.++|+|
T Consensus       202 IeVEv~tl~ea~eal~---~gaDiI~LD---------nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD  269 (289)
T PRK07896        202 CEVEVDSLEQLDEVLA---EGAELVLLD---------NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVD  269 (289)
T ss_pred             EEEEcCCHHHHHHHHH---cCCCEEEeC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCC
Confidence            3444455554544443   689999986         333444444 444444567899999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      +|++|+..++++
T Consensus       270 ~Is~galt~sa~  281 (289)
T PRK07896        270 YLAVGALTHSVP  281 (289)
T ss_pred             EEEeChhhcCCC
Confidence            999999877554

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=98.57  E-value=5e-07  Score=66.67  Aligned_cols=85  Identities=15%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVA   87 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~   87 (115)
                      +..+.+.... + .++||+.+-  .-|+++.  ......++.++++++.. ++|+.+.||| +++++..+.+.|||++.+
T Consensus       127 ~t~ee~~~a~-~-~G~d~i~~~--~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~i  201 (221)
T PRK01130        127 STLEEGLAAQ-K-LGFDFIGTT--LSGYTEETKKPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVV  201 (221)
T ss_pred             CCHHHHHHHH-H-cCCCEEEcC--CceeecCCCCCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence            4455555544 1 479998542  1233332  12334466788887765 7999999999 699999999999999999


Q ss_pred             cccccCCCCHHHH
Q 033625           88 GSSVFGAPEPAHV  100 (115)
Q Consensus        88 Gsaif~~~d~~~~  100 (115)
                      ||+|++.+++.+.
T Consensus       202 Gsai~~~~~~~~~  214 (221)
T PRK01130        202 GGAITRPEEITKW  214 (221)
T ss_pred             chHhcCCHHHHHH
Confidence            9999986555443

>PLN02591 tryptophan synthase

Probab=98.57  E-value=1.4e-06  Score=66.29  Aligned_cols=100  Identities=19%  Similarity=0.326  Sum_probs=70.5

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN   83 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad   83 (115)
                      +.|+|+.+.++.+.+.  .-++|-+++. .|.+|.  .+.+...+.++++|+. .+.|+.+--||+ +++++.+.+.|||
T Consensus       138 v~Ptt~~~ri~~ia~~--~~gFIY~Vs~-~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GAD  213 (250)
T PLN02591        138 TTPTTPTERMKAIAEA--SEGFVYLVSS-TGVTGARASVSGRVESLLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGAD  213 (250)
T ss_pred             eCCCCCHHHHHHHHHh--CCCcEEEeeC-CCCcCCCcCCchhHHHHHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCC
Confidence            4588888888887743  2355554444 455554  3334444558888885 589999999999 9999999999999


Q ss_pred             EEEEcccccC----CCCHHHHHHHHHHHHHH
Q 033625           84 CIVAGSSVFG----APEPAHVISLMRKSVED  110 (115)
Q Consensus        84 ~iv~Gsaif~----~~d~~~~~~~l~~~~~~  110 (115)
                      ++++||++.+    .+++.+..+++.+.+++
T Consensus       214 GvIVGSalVk~i~~~~~~~~~~~~~~~~~~~  244 (250)
T PLN02591        214 GVIVGSAMVKALGEAKSPEEGLKRLEKLAKS  244 (250)
T ss_pred             EEEECHHHHHhhhhccChhHHHHHHHHHHHH
Confidence            9999999865    22455555555555543

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.55  E-value=2.6e-07  Score=71.07  Aligned_cols=77  Identities=19%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      +-.+|-.|..+.+-   .++|+|++-.         |.++.+.+.-++ +...+++.+++.||||++|++++.++|+|.+
T Consensus       187 VEv~tleea~~A~~---~GaDiI~LDn---------~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~I  254 (273)
T PRK05848        187 IECESLEEAKNAMN---AGADIVMCDN---------MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAI  254 (273)
T ss_pred             EEeCCHHHHHHHHH---cCCCEEEECC---------CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEE
Confidence            33444444444444   6899998532         233444443332 2234678899999999999999999999999


Q ss_pred             EEcccccCCC
Q 033625           86 VAGSSVFGAP   95 (115)
Q Consensus        86 v~Gsaif~~~   95 (115)
                      ++|+.+++++
T Consensus       255 svG~l~~sa~  264 (273)
T PRK05848        255 SSGSLIHQAT  264 (273)
T ss_pred             EeChhhcCCC
Confidence            9999888654

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=98.55  E-value=9.4e-07  Score=61.86  Aligned_cols=84  Identities=21%  Similarity=0.219  Sum_probs=60.6

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHc
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~   80 (115)
                      .+++.+++.+..+.....-   .++|++.+....++..++...+.....+.++++ ..++|+.++|||+. +++..+.++
T Consensus       116 ~v~~~~~~~~~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~  191 (200)
T cd04722         116 KVVVKLSPTGELAAAAAEE---AGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEALAL  191 (200)
T ss_pred             eEEEEECCCCccchhhHHH---cCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHHHh
Confidence            4566777766655432122   579999988888776665554433344554444 35799999999999 999999999


Q ss_pred             CCCEEEEcc
Q 033625           81 GANCIVAGS   89 (115)
Q Consensus        81 Gad~iv~Gs   89 (115)
                      |||.+.+||
T Consensus       192 Gad~v~vgs  200 (200)
T cd04722         192 GADGVIVGS  200 (200)
T ss_pred             CCCEEEecC
Confidence            999999986

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=98.47  E-value=6.7e-07  Score=68.93  Aligned_cols=77  Identities=18%  Similarity=0.396  Sum_probs=53.6

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      .+-..| ++...+.++  .++|.|++-         +|.++.+.+ ++.+++..+++.+++.||||++|++++.++|+|+
T Consensus       192 eVEv~t-leea~ea~~--~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~  259 (277)
T TIGR01334       192 TVEADT-IEQALTVLQ--ASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDL  259 (277)
T ss_pred             EEECCC-HHHHHHHHH--cCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCE
Confidence            333443 344444441  589999975         233344433 4445555678999999999999999999999999


Q ss_pred             EEEcccccCC
Q 033625           85 IVAGSSVFGA   94 (115)
Q Consensus        85 iv~Gsaif~~   94 (115)
                      +++|+-.|..
T Consensus       260 is~gal~~a~  269 (277)
T TIGR01334       260 FITSAPYYAA  269 (277)
T ss_pred             EEeCcceecC
Confidence            9999865543

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=98.46  E-value=1.3e-06  Score=67.83  Aligned_cols=91  Identities=15%  Similarity=0.258  Sum_probs=70.6

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEE--eeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVM--TVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCI   85 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm--~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~i   85 (115)
                      |..+....+.+  .++||+-+-  ++|--|.+. +  .-.+++|+++++..+++|+++.||  |+.++++.+.++|++.+
T Consensus       154 t~peea~~f~~--tgvD~LAv~iG~vHG~y~t~~k--~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~Ki  229 (293)
T PRK07315        154 APIEDAKAMVE--TGIDFLAAGIGNIHGPYPENWE--GLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKV  229 (293)
T ss_pred             CCHHHHHHHHH--cCCCEEeeccccccccCCCCCC--cCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence            55555555552  689999887  775555442 3  356778888888765699999999  99999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      .++|+++.  ++.++++++.+.
T Consensus       230 Nv~T~i~~--~~~~~~~~~~~~  249 (293)
T PRK07315        230 NVNTECQI--AFANATRKFARD  249 (293)
T ss_pred             EEccHHHH--HHHHHHHHHHHh
Confidence            99999985  667776666543

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=98.45  E-value=6.1e-07  Score=66.96  Aligned_cols=59  Identities=19%  Similarity=0.421  Sum_probs=51.3

Q ss_pred             HHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           52 RSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        52 ~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ..+++.. +++++.|.|||++++.+..-+.++|++|+|++|.+++||.++++++++.+++
T Consensus       154 ~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~  213 (218)
T PRK13305        154 ARMKALSDIGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDA  213 (218)
T ss_pred             HHHHHHhCCCCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHH
Confidence            3344432 3577999999999999999999999999999999999999999999998865

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.45  E-value=7.8e-07  Score=68.60  Aligned_cols=77  Identities=19%  Similarity=0.336  Sum_probs=54.9

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHH-HHhhC--CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS-LRNRY--PSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~-l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +-.+|..+..+.+-   .++|.|++-...         ++.+.++.+ +++.+  +++.+++.||||.+|++++.++|+|
T Consensus       187 VEv~~leea~~a~~---agaDiI~LDn~~---------~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD  254 (278)
T PRK08385        187 VEVESLEDALKAAK---AGADIIMLDNMT---------PEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVD  254 (278)
T ss_pred             EEeCCHHHHHHHHH---cCcCEEEECCCC---------HHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence            33444444444444   689999875443         445555443 44433  5788999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      ++++|+..++++
T Consensus       255 ~Is~galt~sa~  266 (278)
T PRK08385        255 VISLGALTHSVR  266 (278)
T ss_pred             EEEeChhhcCCC
Confidence            999999877553

>PRK04302 triosephosphate isomerase; Provisional

Probab=98.44  E-value=3.8e-06  Score=62.30  Aligned_cols=84  Identities=21%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             CCCCEEEEEeeeC-CCC-C-cccchhHHHH-HHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHH
Q 033625           24 NPVEMVLVMTVEP-GFG-G-QKFMPEMMDK-VRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        24 ~~vD~vlvm~v~p-G~~-g-q~~~~~~~~k-i~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~   98 (115)
                      ...|+|-++++.. |.+ + +...++..+. ++.+++...+.|+.+-||| +++.+..+.+.|+|.+++||++.+.+|+.
T Consensus       133 ~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~  212 (223)
T PRK04302        133 LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPE  212 (223)
T ss_pred             CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHH
Confidence            3578888776532 322 1 1123344333 4445554457999999999 67778888889999999999999999999


Q ss_pred             HHHHHHHHH
Q 033625           99 HVISLMRKS  107 (115)
Q Consensus        99 ~~~~~l~~~  107 (115)
                      +.++++.+.
T Consensus       213 ~~~~~~~~~  221 (223)
T PRK04302        213 AALRDLVSP  221 (223)
T ss_pred             HHHHHHHhh
Confidence            988877643

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=98.42  E-value=2.2e-06  Score=66.30  Aligned_cols=77  Identities=17%  Similarity=0.371  Sum_probs=53.7

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHH-HhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSL-RNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l-~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +.+-..|..+..+.+-   .++|.|++         ..|.++.+.+.-++ ++..+++.+++.||||++|++++.++|+|
T Consensus       192 IeVEv~tleqa~ea~~---agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD  259 (284)
T PRK06096        192 IVVEADTPKEAIAALR---AQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIR  259 (284)
T ss_pred             EEEECCCHHHHHHHHH---cCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCC
Confidence            3444444444444433   58999998         24555565554443 33356789999999999999999999999


Q ss_pred             EEEEcccccCC
Q 033625           84 CIVAGSSVFGA   94 (115)
Q Consensus        84 ~iv~Gsaif~~   94 (115)
                      ++++|+- +.+
T Consensus       260 ~Is~gal-~~a  269 (284)
T PRK06096        260 LFITSAP-YYA  269 (284)
T ss_pred             EEEECcc-ccC
Confidence            9988875 443

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=98.41  E-value=1.2e-06  Score=65.60  Aligned_cols=49  Identities=29%  Similarity=0.432  Sum_probs=44.5

Q ss_pred             cEEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           62 DIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        62 ~i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      .+.+.+||+++           +..+..+.|+|++|+|++||+++||.++++++++.+..
T Consensus       170 ~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~~  229 (230)
T PRK00230        170 FLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIAG  229 (230)
T ss_pred             eEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhhc
Confidence            45788999988           79999999999999999999999999999999988754

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=98.34  E-value=3.7e-06  Score=62.23  Aligned_cols=89  Identities=13%  Similarity=0.109  Sum_probs=61.7

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ||-|....+-   .+.|.|=   ++|...   +  ....-++.++.-.|++++...|||+.+|+.++.++|+..+.+||.
T Consensus       110 TptEi~~A~~---~Ga~~vK---lFPA~~---~--GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~  178 (204)
T TIGR01182       110 TPSEIMLALE---LGITALK---LFPAEV---S--GGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSW  178 (204)
T ss_pred             CHHHHHHHHH---CCCCEEE---ECCchh---c--CCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChh
Confidence            5556666555   5667664   344310   1  013447777777889999999999999999999999999999999


Q ss_pred             ccCCCCHH-HHHHHHHHHHHH
Q 033625           91 VFGAPEPA-HVISLMRKSVED  110 (115)
Q Consensus        91 if~~~d~~-~~~~~l~~~~~~  110 (115)
                      ||+.+... ..++++++..++
T Consensus       179 L~~~~~~~~~~~~~i~~~a~~  199 (204)
T TIGR01182       179 LVPKDLIAAGDWDEITRLARE  199 (204)
T ss_pred             hcCchhhccccHHHHHHHHHH
Confidence            99755332 234444444433

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.31  E-value=5.7e-06  Score=61.52  Aligned_cols=88  Identities=11%  Similarity=0.125  Sum_probs=57.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ||-|..+.+-   .++|+|=+   +|.   +.+.  ...-++.++.-.|++++.+.|||+.+|+++++++|+-.++.||.
T Consensus       117 TptEi~~a~~---~Ga~~vKl---FPa---~~~g--g~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~  185 (212)
T PRK05718        117 TPSELMLGME---LGLRTFKF---FPA---EASG--GVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSW  185 (212)
T ss_pred             CHHHHHHHHH---CCCCEEEE---ccc---hhcc--CHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChH
Confidence            5555444433   56666643   442   1111  34557777777889999999999999999999999666666777


Q ss_pred             ccCCCCHH-HHHHHHHHHHH
Q 033625           91 VFGAPEPA-HVISLMRKSVE  109 (115)
Q Consensus        91 if~~~d~~-~~~~~l~~~~~  109 (115)
                      +|+.+... ..++++++..+
T Consensus       186 L~~~~~~~~~~~~~i~~~a~  205 (212)
T PRK05718        186 MVPKDAIENGDWDRITRLAR  205 (212)
T ss_pred             hCCcchhccccHHHHHHHHH
Confidence            88654332 23444444333

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.30  E-value=1.6e-05  Score=60.69  Aligned_cols=84  Identities=20%  Similarity=0.325  Sum_probs=61.8

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG   81 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G   81 (115)
                      .-+.|.|+.+.++.+.+.  .-++|-+++. -|.+|.  .+.+...+.++++|+.. +.|+.+-+|| |++++..+.+. 
T Consensus       147 ~lvap~t~~eri~~i~~~--s~gfIY~vs~-~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~-  221 (258)
T PRK13111        147 FLVAPTTTDERLKKIASH--ASGFVYYVSR-AGVTGARSADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAV-  221 (258)
T ss_pred             EEeCCCCCHHHHHHHHHh--CCCcEEEEeC-CCCCCcccCCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHh-
Confidence            346788988888887743  3445554444 233443  34455666788888865 7999999999 78999999885 


Q ss_pred             CCEEEEcccccC
Q 033625           82 ANCIVAGSSVFG   93 (115)
Q Consensus        82 ad~iv~Gsaif~   93 (115)
                      ||++++||++.+
T Consensus       222 ADGviVGSaiv~  233 (258)
T PRK13111        222 ADGVIVGSALVK  233 (258)
T ss_pred             CCEEEEcHHHHH
Confidence            999999999875

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.25  E-value=5.1e-06  Score=64.19  Aligned_cols=72  Identities=24%  Similarity=0.231  Sum_probs=49.9

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      .+|..+..+.+-   .++|.|++-...|         +.   ++++.+. ....++++.||||++|++++.++|+|++++
T Consensus       201 v~tleea~ea~~---~gaDiI~LDn~s~---------e~---l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~  265 (281)
T PRK06106        201 VDTLDQLEEALE---LGVDAVLLDNMTP---------DT---LREAVAIVAGRAITEASGRITPETAPAIAASGVDLISV  265 (281)
T ss_pred             eCCHHHHHHHHH---cCCCEEEeCCCCH---------HH---HHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEEEe
Confidence            343334444433   5899999865544         33   3333222 235679999999999999999999999999


Q ss_pred             cccccCCC
Q 033625           88 GSSVFGAP   95 (115)
Q Consensus        88 Gsaif~~~   95 (115)
                      |+..++++
T Consensus       266 Galthsa~  273 (281)
T PRK06106        266 GWLTHSAP  273 (281)
T ss_pred             ChhhcCCC
Confidence            98776543

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.21  E-value=5.2e-06  Score=64.39  Aligned_cols=77  Identities=14%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      |.+-..|..+..+.+-   .++|.|++-...|         +.+.+.-++.+  .++.+++.||||++|++++.++|+|+
T Consensus       200 IeVEv~tleea~~a~~---agaDiImLDnmsp---------e~l~~av~~~~--~~~~leaSGGI~~~ni~~yA~tGVD~  265 (290)
T PRK06559        200 VEVEVESLAAAEEAAA---AGADIIMLDNMSL---------EQIEQAITLIA--GRSRIECSGNIDMTTISRFRGLAIDY  265 (290)
T ss_pred             EEEECCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHHhc--CceEEEEECCCCHHHHHHHHhcCCCE
Confidence            3444555444444433   5899999854444         44444332221  25889999999999999999999999


Q ss_pred             EEEcccccCCC
Q 033625           85 IVAGSSVFGAP   95 (115)
Q Consensus        85 iv~Gsaif~~~   95 (115)
                      +++|+..++++
T Consensus       266 Is~galthsa~  276 (290)
T PRK06559        266 VSSGSLTHSAK  276 (290)
T ss_pred             EEeCccccCCc
Confidence            99998776554

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.18  E-value=7e-06  Score=63.79  Aligned_cols=77  Identities=21%  Similarity=0.224  Sum_probs=53.1

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      |.+-..|..+..+.+-   .++|.|++-...|         +.+.+.-++.  ..++.+++.||||++|++++.++|+|+
T Consensus       208 IeVEvetleea~eA~~---aGaDiImLDnmsp---------e~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~tGVD~  273 (294)
T PRK06978        208 VQIEVETLAQLETALA---HGAQSVLLDNFTL---------DMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAETGVDR  273 (294)
T ss_pred             EEEEcCCHHHHHHHHH---cCCCEEEECCCCH---------HHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhcCCCE
Confidence            3444555444444443   5899999854443         4433322221  236789999999999999999999999


Q ss_pred             EEEcccccCCC
Q 033625           85 IVAGSSVFGAP   95 (115)
Q Consensus        85 iv~Gsaif~~~   95 (115)
                      +++|+..++++
T Consensus       274 IS~galthsa~  284 (294)
T PRK06978        274 ISIGALTKDVR  284 (294)
T ss_pred             EEeCccccCCc
Confidence            99998777655

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.16  E-value=1.6e-05  Score=58.74  Aligned_cols=89  Identities=15%  Similarity=-0.012  Sum_probs=60.3

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ||-|....+-   .+.|.|=   ++|+..   +  ....-++.++.-.|++++...|||+.+|+.+++++|+...+.||.
T Consensus       106 TptEi~~A~~---~Ga~~vK---~FPa~~---~--GG~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~  174 (201)
T PRK06015        106 TPSEVMALRE---EGYTVLK---FFPAEQ---A--GGAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSW  174 (201)
T ss_pred             CHHHHHHHHH---CCCCEEE---ECCchh---h--CCHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchh
Confidence            5555555555   5666664   445311   0  012347777777899999999999999999999999999989999


Q ss_pred             ccCCCCHH-HHHHHHHHHHHH
Q 033625           91 VFGAPEPA-HVISLMRKSVED  110 (115)
Q Consensus        91 if~~~d~~-~~~~~l~~~~~~  110 (115)
                      ++..+... +.++++++..++
T Consensus       175 l~~~~~~~~~~~~~i~~~a~~  195 (201)
T PRK06015        175 VAPKELVAAGDWAGITKLAAE  195 (201)
T ss_pred             hCCchhhhcccHHHHHHHHHH
Confidence            99654332 344555554444

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=98.15  E-value=1.1e-05  Score=62.11  Aligned_cols=75  Identities=21%  Similarity=0.293  Sum_probs=53.3

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ++|..+..+.+-   .++|.|++-...|         +.+.+.-++.....++.+++.||||++|++.+.+.|+|.|++|
T Consensus       195 vesle~~~eAl~---agaDiImLDNm~~---------e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~g  262 (280)
T COG0157         195 VESLEEAEEALE---AGADIIMLDNMSP---------EELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVG  262 (280)
T ss_pred             cCCHHHHHHHHH---cCCCEEEecCCCH---------HHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeC
Confidence            344444444444   6899999864444         4444433333444578899999999999999999999999999


Q ss_pred             ccccCCC
Q 033625           89 SSVFGAP   95 (115)
Q Consensus        89 saif~~~   95 (115)
                      +-..+.+
T Consensus       263 alths~~  269 (280)
T COG0157         263 ALTHSAP  269 (280)
T ss_pred             ccccCCc
Confidence            7666554

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=98.15  E-value=8.1e-06  Score=63.52  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      +.+-.+| ++...+.++  .++|.|++-...|         +.+.+.-++  ...++.+++.||||++|++++.++|+|+
T Consensus       211 IeVEv~s-leea~ea~~--~gaDiI~LDn~s~---------e~~~~av~~--~~~~~~ieaSGGI~~~ni~~yA~tGVD~  276 (296)
T PRK09016        211 VEVEVEN-LDELDQALK--AGADIIMLDNFTT---------EQMREAVKR--TNGRALLEVSGNVTLETLREFAETGVDF  276 (296)
T ss_pred             EEEEeCC-HHHHHHHHH--cCCCEEEeCCCCh---------HHHHHHHHh--hcCCeEEEEECCCCHHHHHHHHhcCCCE
Confidence            4455555 444444442  5799999865444         333332221  1246889999999999999999999999


Q ss_pred             EEEcccccCC
Q 033625           85 IVAGSSVFGA   94 (115)
Q Consensus        85 iv~Gsaif~~   94 (115)
                      |++|+..-++
T Consensus       277 Is~galthsa  286 (296)
T PRK09016        277 ISVGALTKHV  286 (296)
T ss_pred             EEeCccccCC
Confidence            9999855444

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.15  E-value=5.3e-05  Score=58.24  Aligned_cols=95  Identities=17%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhH
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTI   74 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni   74 (115)
                      ..+...+++ .++|+|.+....+|                  ++|....+..++.+.++++.. ++||.+.||| +.+.+
T Consensus       172 ~~~a~~l~~-~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ipvi~~GGI~s~~da  249 (300)
T TIGR01037       172 TEIAKAAEE-AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIPIIGVGGITSFEDA  249 (300)
T ss_pred             HHHHHHHHH-cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCCEEEECCCCCHHHH
Confidence            344444544 58999987532222                  233333334556777777764 6999999999 79999


Q ss_pred             HHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHHH
Q 033625           75 AEAASAGANCIVAGSSVFGAPEP-AHVISLMRKSVED  110 (115)
Q Consensus        75 ~~l~~~Gad~iv~Gsaif~~~d~-~~~~~~l~~~~~~  110 (115)
                      .+++.+|||.+.+|++++..++. .+..+.|.+.+++
T Consensus       250 ~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~  286 (300)
T TIGR01037       250 LEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKA  286 (300)
T ss_pred             HHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHH
Confidence            99999999999999998877654 3444445555554

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=98.14  E-value=5.5e-06  Score=61.13  Aligned_cols=44  Identities=23%  Similarity=0.434  Sum_probs=38.6

Q ss_pred             cEEEEcCCChh---hH--------HHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625           62 DIEVDGGLGPS---TI--------AEAASAGANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        62 ~i~~dGGI~~~---ni--------~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      .+.+.+||+++   ..        +.+.++|||++|+||+||+++||.+++++++
T Consensus       159 ~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~  213 (213)
T TIGR01740       159 FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRIR  213 (213)
T ss_pred             ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence            47899999977   43        8899999999999999999999999988764

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=98.11  E-value=1.4e-05  Score=61.67  Aligned_cols=79  Identities=14%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i   85 (115)
                      .|.++...++.+. -++||+-  +.++++-|.+.+  .-.+++|+++++.. ++|+++.|  ||+.++++++.++|++.+
T Consensus       152 ~t~~eea~~f~~~-tgvD~Lavs~Gt~hg~~~~~~--~l~~e~L~~i~~~~-~iPlv~hGgSGi~~e~i~~~i~~Gi~ki  227 (282)
T TIGR01859       152 LADPDEAEQFVKE-TGVDYLAAAIGTSHGKYKGEP--GLDFERLKEIKELT-NIPLVLHGASGIPEEQIKKAIKLGIAKI  227 (282)
T ss_pred             cCCHHHHHHHHHH-HCcCEEeeccCccccccCCCC--ccCHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence            3566666666632 3799998  677787777643  23477888888765 69999999  999999999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      .+++.+.
T Consensus       228 Nv~T~l~  234 (282)
T TIGR01859       228 NIDTDCR  234 (282)
T ss_pred             EECcHHH
Confidence            9998875

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.11  E-value=1e-05  Score=62.58  Aligned_cols=61  Identities=16%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      .++|.|++-...|         +.+.+.-.+.  .....+++.||||.+|+.++.++|+|++++|+..++.+
T Consensus       212 ~gaDiImLDn~s~---------e~l~~av~~~--~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths~~  272 (281)
T PRK06543        212 AGVDTIMLDNFSL---------DDLREGVELV--DGRAIVEASGNVNLNTVGAIASTGVDVISVGALTHSVR  272 (281)
T ss_pred             cCCCEEEECCCCH---------HHHHHHHHHh--CCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence            5899999754433         4433322222  13468999999999999999999999999998776654

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.11  E-value=6.6e-05  Score=57.80  Aligned_cols=94  Identities=18%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             hHHHhHhCCCCCCEEEEEeeeCC------------------CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHH
Q 033625           15 EVYPLVEGANPVEMVLVMTVEPG------------------FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIA   75 (115)
Q Consensus        15 ~~~~~~~~~~~vD~vlvm~v~pG------------------~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~   75 (115)
                      .+...+++ .++|.|.+....+|                  ++|....+..++.+.++++.. ++|+.+.||| +.+.+.
T Consensus       173 ~~a~~l~~-~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-~ipvi~~GGI~~~~da~  250 (301)
T PRK07259        173 EIAKAAEE-AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-DIPIIGMGGISSAEDAI  250 (301)
T ss_pred             HHHHHHHH-cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-CCCEEEECCCCCHHHHH
Confidence            33444433 57898876543333                  333333455677888888764 7999999999 799999


Q ss_pred             HHHHcCCCEEEEcccccCCCCHH-HHHHHHHHHHHH
Q 033625           76 EAASAGANCIVAGSSVFGAPEPA-HVISLMRKSVED  110 (115)
Q Consensus        76 ~l~~~Gad~iv~Gsaif~~~d~~-~~~~~l~~~~~~  110 (115)
                      +++.+|||.+.+|++++..++.- +..+.+.+.+++
T Consensus       251 ~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~  286 (301)
T PRK07259        251 EFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK  286 (301)
T ss_pred             HHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence            99999999999999988755543 333334444443

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=98.11  E-value=2e-05  Score=61.68  Aligned_cols=66  Identities=12%  Similarity=0.192  Sum_probs=47.4

Q ss_pred             CCCEEEEEee--eCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           25 PVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        25 ~vD~vlvm~v--~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      ++|.|++-..  .|.-..+     ..+.+++..+. ....++++.||||.+|+.++.++|+|++++|+..++++
T Consensus       229 gaDiImLDnm~~~~~~~~~-----~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa~  297 (308)
T PLN02716        229 SLTRVMLDNMVVPLENGDV-----DVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISSGALTHSVK  297 (308)
T ss_pred             CCCEEEeCCCcccccccCC-----CHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCccccCCC
Confidence            6999998766  4443322     22333433332 23578999999999999999999999999998776543

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.10  E-value=0.0001  Score=56.47  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=53.6

Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHHH
Q 033625           38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEP-AHVISLMRKSVED  110 (115)
Q Consensus        38 ~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~-~~~~~~l~~~~~~  110 (115)
                      ++|....+..++.++++++.. ++||.+.||| +.+++.+++.+|||.+-+|++++..++. .+..+.+.+.+++
T Consensus       210 ~sg~~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~  283 (296)
T cd04740         210 LSGPAIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE  283 (296)
T ss_pred             ecCcccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence            445555556777788887764 7999999999 7899999999999999999998875554 3333445444443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=98.10  E-value=4.2e-05  Score=56.10  Aligned_cols=91  Identities=19%  Similarity=0.260  Sum_probs=62.9

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIV   86 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv   86 (115)
                      ..|-.|.+...-   .++|+|.  +.--||+.... ...-++.++++++.  ++|+.+.|+| +++...+..++||+.+|
T Consensus        99 ist~ee~~~A~~---~G~D~I~--TTLsGYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVV  171 (192)
T PF04131_consen   99 ISTLEEAINAAE---LGFDIIG--TTLSGYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVV  171 (192)
T ss_dssp             -SSHHHHHHHHH---TT-SEEE---TTTTSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred             cCCHHHHHHHHH---cCCCEEE--cccccCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence            344445555544   6899885  66778876543 44567889999875  6999999999 79999999999999999


Q ss_pred             EcccccCCCCHHHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      +||+|.+   |..-.+++.+.++
T Consensus       172 VGsAITr---P~~It~~F~~ai~  191 (192)
T PF04131_consen  172 VGSAITR---PQEITKRFVDAIK  191 (192)
T ss_dssp             E-HHHH----HHHHHHHHHHHCH
T ss_pred             ECcccCC---HHHHHHHHHHHHh
Confidence            9999985   5555566655443

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=98.08  E-value=2.3e-05  Score=58.75  Aligned_cols=73  Identities=23%  Similarity=0.285  Sum_probs=55.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh--hhHHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~--~ni~~l~~~Gad~iv~G   88 (115)
                      ||-|....+-   .+.|+|=   ++|.-.      ....-++.++.-.|++++...|||+.  +|+.+++++|+..+.+|
T Consensus       121 TpsEi~~A~~---~Ga~~vK---lFPA~~------~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~G  188 (222)
T PRK07114        121 SLSEIGYAEE---LGCEIVK---LFPGSV------YGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMG  188 (222)
T ss_pred             CHHHHHHHHH---CCCCEEE---ECcccc------cCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEC
Confidence            5556666655   6777765   445211      12344777777788999999999998  89999999999999999


Q ss_pred             ccccCCC
Q 033625           89 SSVFGAP   95 (115)
Q Consensus        89 saif~~~   95 (115)
                      |.+|..+
T Consensus       189 s~L~~~~  195 (222)
T PRK07114        189 SKLIPKE  195 (222)
T ss_pred             hhhcCcc
Confidence            9999644

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=98.08  E-value=8.3e-06  Score=60.03  Aligned_cols=74  Identities=27%  Similarity=0.387  Sum_probs=52.7

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ||-|....+-   .++|+|=   ++|.-.   +  ....-++.++.-.|++++...|||+.+|++++.++|+..+++||.
T Consensus       110 TptEi~~A~~---~G~~~vK---~FPA~~---~--GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~  178 (196)
T PF01081_consen  110 TPTEIMQALE---AGADIVK---LFPAGA---L--GGPSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSW  178 (196)
T ss_dssp             SHHHHHHHHH---TT-SEEE---ETTTTT---T--THHHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESG
T ss_pred             CHHHHHHHHH---CCCCEEE---Eecchh---c--CcHHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECch
Confidence            5555555555   5667664   455311   1  124557888887889999999999999999999999999999999


Q ss_pred             ccCCC
Q 033625           91 VFGAP   95 (115)
Q Consensus        91 if~~~   95 (115)
                      +|+.+
T Consensus       179 L~~~~  183 (196)
T PF01081_consen  179 LFPKD  183 (196)
T ss_dssp             GGSHH
T ss_pred             hcCHH
Confidence            99854

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.02  E-value=5.5e-05  Score=57.68  Aligned_cols=76  Identities=18%  Similarity=0.290  Sum_probs=57.3

Q ss_pred             CCCCEEEEEeeeC------------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625           24 NPVEMVLVMTVEP------------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGAN   83 (115)
Q Consensus        24 ~~vD~vlvm~v~p------------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad   83 (115)
                      .++|+|.+-...+                  |++|....+..++.++++++..+ ++||.+.|||+ .+++.+++.+|||
T Consensus       188 ~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd  267 (289)
T cd02810         188 AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGAS  267 (289)
T ss_pred             cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCcc
Confidence            4699998753322                  22333334456777888888765 79999999997 7999999999999


Q ss_pred             EEEEcccccCC-CCHHH
Q 033625           84 CIVAGSSVFGA-PEPAH   99 (115)
Q Consensus        84 ~iv~Gsaif~~-~d~~~   99 (115)
                      .+-+|++++.. ++.-.
T Consensus       268 ~V~vg~a~~~~GP~~~~  284 (289)
T cd02810         268 AVQVATALMWDGPDVIR  284 (289)
T ss_pred             HheEcHHHHhcCccHHH
Confidence            99999999876 66533

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.02  E-value=6.6e-05  Score=55.80  Aligned_cols=80  Identities=19%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+++..+.+. + .++|.+.+..+.+.-..+.   ..++.++++++.. ++|+.+.|||+ .+++..+.++|++.+++||
T Consensus       150 ~~~~~~~~~~-~-~G~~~i~~~~~~~~g~~~g---~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vgs  223 (241)
T PRK13585        150 TPVEAAKRFE-E-LGAGSILFTNVDVEGLLEG---VNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVGS  223 (241)
T ss_pred             CHHHHHHHHH-H-cCCCEEEEEeecCCCCcCC---CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEH
Confidence            3455555554 2 4799999888765322122   2345567777654 69999999999 8999999999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      ++|+.+.
T Consensus       224 a~~~~~~  230 (241)
T PRK13585        224 ALYKGKF  230 (241)
T ss_pred             HHhcCCc
Confidence            9998654

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=98.00  E-value=0.00012  Score=54.49  Aligned_cols=92  Identities=18%  Similarity=0.286  Sum_probs=69.9

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .+|..|.+...-   .++|+|.  +.-.||++.  .....-+..++++++  .++++.+.|.++ ++..+...+.||+.+
T Consensus       134 ~St~ee~l~a~~---~G~D~IG--TTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aV  206 (229)
T COG3010         134 CSTFEEGLNAHK---LGFDIIG--TTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAV  206 (229)
T ss_pred             cCCHHHHHHHHH---cCCcEEe--cccccccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEE
Confidence            455556666655   7899986  677788773  233446777888877  479999999985 899999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ++||+|.+   |++-++++.+.+++
T Consensus       207 vVGsAITR---p~~It~~F~~~ik~  228 (229)
T COG3010         207 VVGSAITR---PEEITQWFVDAIKS  228 (229)
T ss_pred             EECcccCC---HHHHHHHHHHHHhc
Confidence            99999985   56666666666553

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.98  E-value=5.1e-05  Score=56.44  Aligned_cols=81  Identities=17%  Similarity=0.401  Sum_probs=61.1

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      ..|++.++.+..  .++|++.+--.+....+..   ...+.++++++.. +.|+.+.|||+ .+.+..+.++|||.+++|
T Consensus        32 ~~~~e~a~~~~~--~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iG  105 (241)
T PRK13585         32 GDPVEVAKRWVD--AGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILG  105 (241)
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence            467788888772  4799998766654444433   2345677777664 68999999999 678899999999999999


Q ss_pred             ccccCCCC
Q 033625           89 SSVFGAPE   96 (115)
Q Consensus        89 saif~~~d   96 (115)
                      +..++.++
T Consensus       106 s~~~~~~~  113 (241)
T PRK13585        106 TAAVENPE  113 (241)
T ss_pred             hHHhhChH
Confidence            99986543

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=97.95  E-value=4.4e-05  Score=57.94  Aligned_cols=49  Identities=22%  Similarity=0.432  Sum_probs=41.4

Q ss_pred             CCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           60 SLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        60 ~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      .+|++  +.||| |+.....+.+.|+|++-+||.||+++||.+.++.+-+..
T Consensus       206 rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~  257 (296)
T COG0214         206 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEAT  257 (296)
T ss_pred             CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHHHH
Confidence            35543  77776 789999999999999999999999999999988877543

>cd04732 HisA HisA

Probab=97.91  E-value=9.5e-05  Score=54.52  Aligned_cols=82  Identities=18%  Similarity=0.349  Sum_probs=62.1

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~   87 (115)
                      ...|++..+.|.+  .++|.+-+...+..+.++......   ++++++.. ++|+.+.|||+. +.+..+.++|||.+++
T Consensus        28 ~~dp~~~a~~~~~--~g~d~l~v~dl~~~~~~~~~~~~~---i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvi  101 (234)
T cd04732          28 SDDPVEVAKKWEE--AGAKWLHVVDLDGAKGGEPVNLEL---IEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVII  101 (234)
T ss_pred             CCCHHHHHHHHHH--cCCCEEEEECCCccccCCCCCHHH---HHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence            3466677777662  479999988777777666655444   55555554 699999999876 8999999999999999


Q ss_pred             cccccCCCC
Q 033625           88 GSSVFGAPE   96 (115)
Q Consensus        88 Gsaif~~~d   96 (115)
                      |++.+..++
T Consensus       102 gs~~l~dp~  110 (234)
T cd04732         102 GTAAVKNPE  110 (234)
T ss_pred             CchHHhChH
Confidence            999886543

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.89  E-value=0.0001  Score=55.70  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=64.7

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      ..|++..+.|.+  .++|.+-+.=.+....|.....+   -++++.+..  .|++++|||+ .+.+..+.++|||-+|+|
T Consensus        30 ~dP~~~A~~~~~--~ga~~lhivDLd~a~~g~~~n~~---~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvig  102 (241)
T PRK14114         30 KDPAELVEKLIE--EGFTLIHVVDLSKAIENSVENLP---VLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVS  102 (241)
T ss_pred             CCHHHHHHHHHH--CCCCEEEEEECCCcccCCcchHH---HHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEEC
Confidence            477888877772  47999998877776666665444   455555554  6999999999 599999999999999999


Q ss_pred             ccccCCCCHHHH
Q 033625           89 SSVFGAPEPAHV  100 (115)
Q Consensus        89 saif~~~d~~~~  100 (115)
                      |+.++.++.-+.
T Consensus       103 T~a~~~p~~l~~  114 (241)
T PRK14114        103 SKVLEDPSFLKF  114 (241)
T ss_pred             chhhCCHHHHHH
Confidence            999976654333

>cd02812 PcrB_like PcrB_like proteins

Probab=97.86  E-value=4.6e-05  Score=57.01  Aligned_cols=76  Identities=26%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      .+.+..|.   --.+++.+=-++-.++|..-.++.   ++++++...+.|+.+-||| +.+.++++.++|||.+|+||++
T Consensus       134 ~e~~~ayA---~aae~~g~~ivyLe~SG~~~~~e~---I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai  207 (219)
T cd02812         134 PEDAAAYA---LAAEYLGMPIVYLEYSGAYGPPEV---VRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIV  207 (219)
T ss_pred             HHHHHHHH---HHHHHcCCeEEEeCCCCCcCCHHH---HHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence            34444444   233444422233346777644444   5555554336899999999 7899999999999999999999


Q ss_pred             cCC
Q 033625           92 FGA   94 (115)
Q Consensus        92 f~~   94 (115)
                      ++.
T Consensus       208 ~~~  210 (219)
T cd02812         208 EED  210 (219)
T ss_pred             hCC
Confidence            975

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=97.86  E-value=0.00021  Score=54.69  Aligned_cols=81  Identities=11%  Similarity=0.143  Sum_probs=54.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCC---H--H
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE---P--A   98 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d---~--~   98 (115)
                      ...|.|.+-..   -+|+.+..+.   ++++++..++.|+.+-||+|++|+.++.+. +|++++||.+=+..+   +  .
T Consensus       170 ~~aDavivtG~---~TG~~~d~~~---l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K~~G~~~n~~D~  242 (257)
T TIGR00259       170 GLADAVILSGK---TTGTEVDLEL---LKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATTIKKDGVFNNFVDQ  242 (257)
T ss_pred             cCCCEEEECcC---CCCCCCCHHH---HHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcccCCccCCCcCH
Confidence            34899964322   2566665554   555555456789999999999999999887 999999998632121   1  3


Q ss_pred             HHHHHHHHHHHHH
Q 033625           99 HVISLMRKSVEDA  111 (115)
Q Consensus        99 ~~~~~l~~~~~~~  111 (115)
                      +.+++|.+.+++.
T Consensus       243 ~rV~~Fm~~v~~~  255 (257)
T TIGR00259       243 ARVSQFVEKVAHG  255 (257)
T ss_pred             HHHHHHHHHHHHh
Confidence            4555555555443

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=97.84  E-value=0.00014  Score=54.95  Aligned_cols=82  Identities=18%  Similarity=0.290  Sum_probs=62.1

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      ..|++..+.+. + .++|.+.+.-......++..   .++-++++++.. ++|+.+.|||+ .+.+..+..+|++.+++|
T Consensus        30 ~dp~~~a~~~~-~-~G~~~l~v~Dl~~~~~~~~~---n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg  103 (254)
T TIGR00735        30 GDPVELAQRYD-E-EGADELVFLDITASSEGRTT---MIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSIN  103 (254)
T ss_pred             CCHHHHHHHHH-H-cCCCEEEEEcCCcccccChh---hHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            35667777765 2 47999998877766444443   344566666553 68999999998 999999999999999999


Q ss_pred             ccccCCCCH
Q 033625           89 SSVFGAPEP   97 (115)
Q Consensus        89 saif~~~d~   97 (115)
                      ++.+..++.
T Consensus       104 t~~~~~p~~  112 (254)
T TIGR00735       104 TAAVKNPEL  112 (254)
T ss_pred             hhHhhChHH
Confidence            999976543

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=97.82  E-value=0.0001  Score=57.70  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=66.8

Q ss_pred             EEEecCCCCH---HhHHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625            4 GVALKPGTSV---EEVYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIE   64 (115)
Q Consensus         4 Glal~p~t~~---~~~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i~   64 (115)
                      .+=|.|....   ..+...+++ .++|+|.+....+               |++|....+..++.+.++++..+ ++||.
T Consensus       206 ~vKl~~~~~~~~~~~ia~~l~~-aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi  284 (327)
T cd04738         206 LVKIAPDLSDEELEDIADVALE-HGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPII  284 (327)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHH-cCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEE
Confidence            3445565543   333333433 5899998765321               56666666677888999988754 69999


Q ss_pred             EEcCC-ChhhHHHHHHcCCCEEEEcccccCC-CCH
Q 033625           65 VDGGL-GPSTIAEAASAGANCIVAGSSVFGA-PEP   97 (115)
Q Consensus        65 ~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~-~d~   97 (115)
                      +.||| |.+.+.++..+|||.+-+||+++.. ++.
T Consensus       285 ~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~  319 (327)
T cd04738         285 GVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGL  319 (327)
T ss_pred             EECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHH
Confidence            99999 8999999999999999999997643 544

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.82  E-value=0.00016  Score=55.31  Aligned_cols=100  Identities=17%  Similarity=0.359  Sum_probs=69.7

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Ga   82 (115)
                      -+.|.|+.+.++.+.+.+  -.+|-+++. .|.+|..  +.....+.++++|+.. +.|+.+==||+. +.++.+. .||
T Consensus       146 lv~p~t~~~Ri~~i~~~a--~gFiY~vs~-~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~-~~a  220 (259)
T PF00290_consen  146 LVAPTTPEERIKKIAKQA--SGFIYLVSR-MGVTGSRTELPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLA-AGA  220 (259)
T ss_dssp             EEETTS-HHHHHHHHHH---SSEEEEESS-SSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHH-TTS
T ss_pred             EECCCCCHHHHHHHHHhC--CcEEEeecc-CCCCCCcccchHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHH-ccC
Confidence            467899999999988443  345555444 4545443  4455667788888876 899999888875 7888887 899


Q ss_pred             CEEEEcccccC-----CCCHHHHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFG-----APEPAHVISLMRKSVED  110 (115)
Q Consensus        83 d~iv~Gsaif~-----~~d~~~~~~~l~~~~~~  110 (115)
                      |++|+||++.+     .++..+.++++.+..++
T Consensus       221 DGvIVGSa~v~~i~~~~~~~~~~~~~~~~~~~~  253 (259)
T PF00290_consen  221 DGVIVGSAFVKIIEENGDDAEKFLKELKEFVRE  253 (259)
T ss_dssp             SEEEESHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CEEEECHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence            99999999874     34566777777776654

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>PRK06801 hypothetical protein; Provisional

Probab=97.79  E-value=0.0003  Score=54.52  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCIV   86 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~iv   86 (115)
                      .|..+....+.+. -++|++-+ ++.+--+..+.. +-.+++++++++.. ++|+++-||  ++.++++.+.++|++-|-
T Consensus       155 ~T~pe~a~~f~~~-tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~~e~~~~~i~~Gi~KIN  231 (286)
T PRK06801        155 FTDPQLARDFVDR-TGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQT-GLPLVLHGGSGISDADFRRAIELGIHKIN  231 (286)
T ss_pred             CCCHHHHHHHHHH-HCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence            5676777777743 58999987 554422212211 24677788887764 699999999  999999999999999999


Q ss_pred             EcccccC
Q 033625           87 AGSSVFG   93 (115)
Q Consensus        87 ~Gsaif~   93 (115)
                      ++|+++.
T Consensus       232 v~T~~~~  238 (286)
T PRK06801        232 FYTGMSQ  238 (286)
T ss_pred             ehhHHHH
Confidence            9999874

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.78  E-value=0.00019  Score=52.97  Aligned_cols=80  Identities=13%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G   88 (115)
                      ..|++..+.|. + .++|.+.+...+.-+.|+..   .++.++++++.. ++|+.+.|||+. +.+..+.++|||.+++|
T Consensus        30 ~~~~~~a~~~~-~-~g~~~i~v~dld~~~~g~~~---~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg  103 (233)
T PRK00748         30 DDPVAQAKAWE-D-QGAKWLHLVDLDGAKAGKPV---NLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRVIIG  103 (233)
T ss_pred             CCHHHHHHHHH-H-cCCCEEEEEeCCccccCCcc---cHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEEEEC
Confidence            46667677765 2 47999999887544455443   345566666653 689999999985 79999999999999999


Q ss_pred             ccccCCC
Q 033625           89 SSVFGAP   95 (115)
Q Consensus        89 saif~~~   95 (115)
                      ++++..+
T Consensus       104 ~~~l~~~  110 (233)
T PRK00748        104 TAAVKNP  110 (233)
T ss_pred             chHHhCH
Confidence            9999754

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=97.77  E-value=0.0001  Score=57.44  Aligned_cols=68  Identities=26%  Similarity=0.400  Sum_probs=48.4

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      ++|.|++-+..-. .|  ..++..+++++.-+ . ++++.|++.||||++|+..+.+.|+|++.+||.+.+++
T Consensus       211 ~~d~I~lDn~~~~-~G--~~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~~  280 (302)
T cd01571         211 KLDGVRLDTPSSR-RG--VFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKAP  280 (302)
T ss_pred             CCcEEEECCCCCC-CC--CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCCC
Confidence            5899987644210 01  12344455554433 2 35788999999999999999999999999999988654

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.76  E-value=0.00025  Score=53.34  Aligned_cols=81  Identities=20%  Similarity=0.323  Sum_probs=61.6

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      +.|++..+.+. + .++|.+.+-....-..++   +..++.++++++.. ++|+.+.|||+ .+.+..+...|+|.+++|
T Consensus        30 ~d~~~~a~~~~-~-~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viig  103 (253)
T PRK02083         30 GDPVELAKRYN-E-EGADELVFLDITASSEGR---DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSIN  103 (253)
T ss_pred             CCHHHHHHHHH-H-cCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            35667666665 2 579999988777633333   34556677776654 69999999998 899999999999999999


Q ss_pred             ccccCCCC
Q 033625           89 SSVFGAPE   96 (115)
Q Consensus        89 saif~~~d   96 (115)
                      ++.++.++
T Consensus       104 t~~l~~p~  111 (253)
T PRK02083        104 SAAVANPE  111 (253)
T ss_pred             hhHhhCcH
Confidence            99998654

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=97.75  E-value=0.00057  Score=52.29  Aligned_cols=80  Identities=21%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             CCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      +.-.|+-+...-| +|+-. .+..   |+.+++. +++|+.+|+||. ++.+....+.|+|.+-+.|+|++++||.+.++
T Consensus       158 Gc~aVMPlgsPIG-Sg~Gl~n~~~---l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~  232 (267)
T CHL00162        158 GCATVMPLGSPIG-SGQGLQNLLN---LQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAK  232 (267)
T ss_pred             CCeEEeeccCccc-CCCCCCCHHH---HHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHH
Confidence            4445544444444 55655 4544   4555554 579999999995 78899999999999999999999999999999


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       233 a~~~AV~  239 (267)
T CHL00162        233 AMKLAVQ  239 (267)
T ss_pred             HHHHHHH
Confidence            8887665

>cd04732 HisA HisA

Probab=97.74  E-value=0.00029  Score=51.92  Aligned_cols=80  Identities=10%  Similarity=0.115  Sum_probs=57.9

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      .++.+.++.+. + .++|+++++.+......+..   .++.++++++.. ++|+.+.|||+ .+.+..+.+.|+|.+++|
T Consensus       146 ~~~~~~~~~~~-~-~ga~~iii~~~~~~g~~~g~---~~~~i~~i~~~~-~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg  219 (234)
T cd04732         146 VSLEELAKRFE-E-LGVKAIIYTDISRDGTLSGP---NFELYKELAAAT-GIPVIASGGVSSLDDIKALKELGVAGVIVG  219 (234)
T ss_pred             CCHHHHHHHHH-H-cCCCEEEEEeecCCCccCCC---CHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence            34555566655 2 36999999888653222222   245567776654 69999999998 456999999999999999


Q ss_pred             ccccCCC
Q 033625           89 SSVFGAP   95 (115)
Q Consensus        89 saif~~~   95 (115)
                      |+++..+
T Consensus       220 ~~~~~~~  226 (234)
T cd04732         220 KALYEGK  226 (234)
T ss_pred             HHHHcCC
Confidence            9998765

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.74  E-value=0.00047  Score=51.42  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=54.7

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEcccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSV   91 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~Gsai   91 (115)
                      +..+.+. + .++|++.+..+.+.-+.+.+.   ++.++++++. .++|+.+.|||+ ++.+..+.+. |+|.+++|+++
T Consensus       153 ~~~~~l~-~-~G~d~i~v~~i~~~g~~~g~~---~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al  226 (243)
T cd04731         153 EWAKEVE-E-LGAGEILLTSMDRDGTKKGYD---LELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIF  226 (243)
T ss_pred             HHHHHHH-H-CCCCEEEEeccCCCCCCCCCC---HHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence            3444444 2 589999998776643334433   4445666554 379999999995 8999998886 99999999998


Q ss_pred             cCCC
Q 033625           92 FGAP   95 (115)
Q Consensus        92 f~~~   95 (115)
                      +...
T Consensus       227 ~~~~  230 (243)
T cd04731         227 HFGE  230 (243)
T ss_pred             HcCC
Confidence            8654

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.73  E-value=0.0003  Score=51.91  Aligned_cols=79  Identities=14%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.|- + .++|.+.+...+.-+.|+....   +.++++++.. ..|+.+.|||+ .+.+..+.++|||.+++|+
T Consensus        29 dp~~~a~~~~-~-~g~~~l~v~dl~~~~~g~~~~~---~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs  102 (230)
T TIGR00007        29 DPVEAAKKWE-E-EGAERIHVVDLDGAKEGGPVNL---PVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT  102 (230)
T ss_pred             CHHHHHHHHH-H-cCCCEEEEEeCCccccCCCCcH---HHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence            5667777764 2 4799999977666666665443   4455555553 68999999987 6999999999999999999


Q ss_pred             cccCCC
Q 033625           90 SVFGAP   95 (115)
Q Consensus        90 aif~~~   95 (115)
                      +.++.+
T Consensus       103 ~~l~d~  108 (230)
T TIGR00007       103 AAVENP  108 (230)
T ss_pred             HHhhCH
Confidence            998643

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.69  E-value=0.00039  Score=51.83  Aligned_cols=81  Identities=19%  Similarity=0.273  Sum_probs=60.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.+. + .++|.+.+..+.....++..   -++.++++++.. ++|+.+.|||+ .+.+..+.+.|+|.+++|+
T Consensus        28 d~~~~a~~~~-~-~G~~~i~i~d~~~~~~~~~~---~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~  101 (243)
T cd04731          28 DPVELAKRYN-E-QGADELVFLDITASSEGRET---MLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINS  101 (243)
T ss_pred             CHHHHHHHHH-H-CCCCEEEEEcCCcccccCcc---cHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence            4556556554 3 47999998888765333333   345567776653 69999999998 5899999999999999999


Q ss_pred             cccCCCCH
Q 033625           90 SVFGAPEP   97 (115)
Q Consensus        90 aif~~~d~   97 (115)
                      ++++.++.
T Consensus       102 ~~~~~p~~  109 (243)
T cd04731         102 AAVENPEL  109 (243)
T ss_pred             hhhhChHH
Confidence            99976644

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=97.68  E-value=0.0002  Score=52.51  Aligned_cols=73  Identities=14%  Similarity=0.170  Sum_probs=52.9

Q ss_pred             CCCCEEEEEeeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHc-CCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASA-GANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~-Gad~iv~Gsaif~~~d~~~~  100 (115)
                      .++|+|.+-   .+...| ...+..++.++++++. .++|+.+.||| +.+.+..+.+. |+|.+.+|++++..++.-+.
T Consensus       150 ~Gvd~i~v~---~~~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~  225 (231)
T cd02801         150 AGASALTVH---GRTREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFRE  225 (231)
T ss_pred             hCCCEEEEC---CCCHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHh
Confidence            378999653   332222 1223355667777764 47999999999 79999998887 89999999999987765443

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=97.68  E-value=0.0014  Score=51.75  Aligned_cols=77  Identities=26%  Similarity=0.363  Sum_probs=61.3

Q ss_pred             EEEEe-eeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625           29 VLVMT-VEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        29 vlvm~-v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      +-+|+ -.|=-+|+.. .++.   |+.+.+. +++|+.+|+||. ++.+....+.|+|.+-+-|+|.+++||..+++.++
T Consensus       220 ~avmPl~~pIGsg~gv~~p~~---i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~  295 (326)
T PRK11840        220 VAVMPLGAPIGSGLGIQNPYT---IRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK  295 (326)
T ss_pred             EEEeeccccccCCCCCCCHHH---HHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence            66666 4553377765 3444   5555555 579999999995 78999999999999999999999999999999999


Q ss_pred             HHHH
Q 033625          106 KSVE  109 (115)
Q Consensus       106 ~~~~  109 (115)
                      ...+
T Consensus       296 ~av~  299 (326)
T PRK11840        296 LAVE  299 (326)
T ss_pred             HHHH
Confidence            7765

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=97.66  E-value=0.0004  Score=53.03  Aligned_cols=77  Identities=23%  Similarity=0.346  Sum_probs=55.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCC---H--H
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE---P--A   98 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d---~--~   98 (115)
                      ...|.|.+-....   |+.   ..+++++++|+..+ +|+.+-+|+|.+|+.++.+. ||++++||.+=+..+   +  .
T Consensus       171 ~~aDaviVtG~~T---G~~---~~~~~l~~vr~~~~-~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~  242 (254)
T PF03437_consen  171 GGADAVIVTGKAT---GEP---PDPEKLKRVREAVP-VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDP  242 (254)
T ss_pred             cCCCEEEECCccc---CCC---CCHHHHHHHHhcCC-CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCH
Confidence            5799997643333   343   35667888888776 99999999999999999876 999999998643322   2  4


Q ss_pred             HHHHHHHHHH
Q 033625           99 HVISLMRKSV  108 (115)
Q Consensus        99 ~~~~~l~~~~  108 (115)
                      +++++|-+..
T Consensus       243 ~Rv~~fm~~v  252 (254)
T PF03437_consen  243 ERVRRFMEAV  252 (254)
T ss_pred             HHHHHHHHHh
Confidence            5555555443

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=97.64  E-value=0.0005  Score=53.18  Aligned_cols=74  Identities=14%  Similarity=0.225  Sum_probs=54.1

Q ss_pred             CCCCEEEEEeeeCCCCCccc---------chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEccccc
Q 033625           24 NPVEMVLVMTVEPGFGGQKF---------MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVF   92 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~---------~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~Gsaif   92 (115)
                      .++|||-+-   .|+..+..         ....++.++++++.. ++||.+.|||+ .+.+.++++. |+|.+.+|++++
T Consensus       240 ~G~d~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~l  315 (327)
T cd02803         240 AGVDALHVS---GGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALL  315 (327)
T ss_pred             cCCCEEEeC---CCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHH
Confidence            368999753   33322211         133445567777664 69999999997 9999999988 899999999999


Q ss_pred             CCCCHHHHH
Q 033625           93 GAPEPAHVI  101 (115)
Q Consensus        93 ~~~d~~~~~  101 (115)
                      ..+++.+.+
T Consensus       316 adP~l~~k~  324 (327)
T cd02803         316 ADPDLPNKA  324 (327)
T ss_pred             hCccHHHHH
Confidence            888875544

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.63  E-value=0.00062  Score=50.41  Aligned_cols=80  Identities=15%  Similarity=0.300  Sum_probs=59.3

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +|++.++.+- . .++|.+.+.-+.-...++......   ++++++.. +.|+.+.||++ .+.+..+.+.|++.+++|+
T Consensus        31 dp~~~a~~~~-~-~g~~~i~i~dl~~~~~~~~~n~~~---~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~  104 (232)
T TIGR03572        31 DPVNAARIYN-A-KGADELIVLDIDASKRGREPLFEL---ISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINT  104 (232)
T ss_pred             CHHHHHHHHH-H-cCCCEEEEEeCCCcccCCCCCHHH---HHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence            6777777764 2 579999987776654454444444   55555543 68999999998 5788889999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      +++..++
T Consensus       105 ~~l~~~~  111 (232)
T TIGR03572       105 AALENPD  111 (232)
T ss_pred             hHhcCHH
Confidence            9987653

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.62  E-value=0.0009  Score=51.11  Aligned_cols=73  Identities=16%  Similarity=0.193  Sum_probs=55.5

Q ss_pred             CC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .| ++..+.+.+  .+++++=+.=.     |.. ..   +.++++.+. .+.|+.+-|||+.+++..+.++||+-+++||
T Consensus        38 ~pp~~~A~~~~~--~Ga~~lHvVDL-----g~~-n~---~~i~~i~~~-~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS  105 (253)
T TIGR02129        38 KPSSYYAKLYKD--DGVKGCHVIML-----GPN-ND---DAAKEALHA-YPGGLQVGGGINDTNAQEWLDEGASHVIVTS  105 (253)
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEEC-----CCC-cH---HHHHHHHHh-CCCCEEEeCCcCHHHHHHHHHcCCCEEEECc
Confidence            46 888888772  46888766433     333 33   345555554 3699999999999999999999999999999


Q ss_pred             cccCCC
Q 033625           90 SVFGAP   95 (115)
Q Consensus        90 aif~~~   95 (115)
                      +.|..+
T Consensus       106 ~av~~~  111 (253)
T TIGR02129       106 WLFTKG  111 (253)
T ss_pred             HHHhCC
Confidence            999754

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00087  Score=51.50  Aligned_cols=83  Identities=22%  Similarity=0.364  Sum_probs=59.3

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc--chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~--~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      -..|+|+.+.++.+.+.+.+.  |-..++. |.+|..-  .....+.++++|+.. ++|+.+==||+ ++.++++.+. |
T Consensus       153 lvaPtt~~~rl~~i~~~a~GF--iY~vs~~-GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-A  227 (265)
T COG0159         153 LVAPTTPDERLKKIAEAASGF--IYYVSRM-GVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-A  227 (265)
T ss_pred             EeCCCCCHHHHHHHHHhCCCc--EEEEecc-cccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-C
Confidence            356899999999988554333  3333333 3333322  223566788888876 88988887875 8999999999 9


Q ss_pred             CEEEEcccccC
Q 033625           83 NCIVAGSSVFG   93 (115)
Q Consensus        83 d~iv~Gsaif~   93 (115)
                      |++|+||++.+
T Consensus       228 DGVIVGSAiV~  238 (265)
T COG0159         228 DGVIVGSAIVK  238 (265)
T ss_pred             CeEEEcHHHHH
Confidence            99999999875

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.60  E-value=0.00055  Score=51.40  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=60.4

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      .+|++..+.|.+. .++|.+.+.=.+--..|+.-.   ++.|+++++. ..+|++++|||+ .+.+..+..+||+-+|+|
T Consensus        31 ~dp~~~a~~~~~~-~Ga~~l~ivDLd~a~~~~~~n---~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvig  105 (234)
T PRK13587         31 RSAEESIAYYSQF-ECVNRIHIVDLIGAKAQHARE---FDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVG  105 (234)
T ss_pred             CCHHHHHHHHHhc-cCCCEEEEEECcccccCCcch---HHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEEC
Confidence            3667777777621 368999887665554455443   3446666554 368999999996 788999999999999999


Q ss_pred             ccccCCCCH
Q 033625           89 SSVFGAPEP   97 (115)
Q Consensus        89 saif~~~d~   97 (115)
                      |+.++.++.
T Consensus       106 t~a~~~~~~  114 (234)
T PRK13587        106 TKGIQDTDW  114 (234)
T ss_pred             chHhcCHHH
Confidence            998876543

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.58  E-value=0.00052  Score=51.39  Aligned_cols=75  Identities=24%  Similarity=0.444  Sum_probs=55.1

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.|.   +.+|.+.+.-.+--..|+...   ++.++++++. ...|+.+.|||+ .+.+..+.+.|+|.+++|+
T Consensus        31 dp~~~a~~~~---~~~~~l~ivDldga~~g~~~n---~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGt  103 (228)
T PRK04128         31 DPVEIALRFS---EYVDKIHVVDLDGAFEGKPKN---LDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGT  103 (228)
T ss_pred             CHHHHHHHHH---HhCCEEEEEECcchhcCCcch---HHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence            6777777776   348988885444333454433   3345555554 479999999997 6888999999999999999


Q ss_pred             ccc
Q 033625           90 SVF   92 (115)
Q Consensus        90 aif   92 (115)
                      +.+
T Consensus       104 aa~  106 (228)
T PRK04128        104 KAF  106 (228)
T ss_pred             hhc
Confidence            988

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.58  E-value=0.00063  Score=51.59  Aligned_cols=80  Identities=14%  Similarity=0.259  Sum_probs=60.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.|..  .++|.+.+.=+.....++...   ++-++++.+. ..+|+.+.||+ +.+.+..+...|++.+++|+
T Consensus        31 dp~~~a~~~~~--~g~~~l~i~Dl~~~~~~~~~n---~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs  104 (258)
T PRK01033         31 DPINAVRIFNE--KEVDELIVLDIDASKRGSEPN---YELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINT  104 (258)
T ss_pred             CHHHHHHHHHH--cCCCEEEEEECCCCcCCCccc---HHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEECh
Confidence            67777777762  379999987776654444433   4446666655 36899999999 88999999999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      +++..++
T Consensus       105 ~~~~~~~  111 (258)
T PRK01033        105 AALEDPD  111 (258)
T ss_pred             HHhcCHH
Confidence            9987653

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=97.56  E-value=0.00038  Score=52.50  Aligned_cols=56  Identities=21%  Similarity=0.470  Sum_probs=42.1

Q ss_pred             HHHHHHHhhCCCC-cEEEEcCCChh-hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           49 DKVRSLRNRYPSL-DIEVDGGLGPS-TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        49 ~ki~~l~~~~~~~-~i~~dGGI~~~-ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      +.++++++.. +. |+.+-|||+.. +++++..+|||.+|+||++.+  |+.+.++++++.
T Consensus       173 e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~  230 (232)
T PRK04169        173 EMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA  230 (232)
T ss_pred             HHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence            3455555543 45 99999999876 999989999999999999985  555555555543

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=97.55  E-value=0.00077  Score=51.07  Aligned_cols=81  Identities=23%  Similarity=0.416  Sum_probs=58.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      -+...|+-++..-| +|+-.. +.   -|+.+++.. ++|+.+|+|| +++...+..+.|+|.+.+-|+|.++.||..++
T Consensus       143 ~GcaavMPlgsPIG-Sg~Gi~n~~---~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA  217 (247)
T PF05690_consen  143 AGCAAVMPLGSPIG-SGRGIQNPY---NLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMA  217 (247)
T ss_dssp             TT-SEBEEBSSSTT-T---SSTHH---HHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHH
T ss_pred             CCCCEEEecccccc-cCcCCCCHH---HHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHH
Confidence            35556665555445 555553 33   356666554 8999999999 58899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 033625          102 SLMRKSVE  109 (115)
Q Consensus       102 ~~l~~~~~  109 (115)
                      +.++...+
T Consensus       218 ~Af~~AV~  225 (247)
T PF05690_consen  218 RAFKLAVE  225 (247)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987665

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.54  E-value=0.00069  Score=50.89  Aligned_cols=80  Identities=18%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G   88 (115)
                      ..|++..+.|.+  .++|.+-+.=.+.-. ++...   .+-++++.+... .|++++|||+. +.+..+.+.|||-+|+|
T Consensus        30 ~dP~~~a~~~~~--~ga~~lhivDLd~a~-~~~~n---~~~i~~i~~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~kvvig  102 (232)
T PRK13586         30 GNPIEIASKLYN--EGYTRIHVVDLDAAE-GVGNN---EMYIKEISKIGF-DWIQVGGGIRDIEKAKRLLSLDVNALVFS  102 (232)
T ss_pred             CCHHHHHHHHHH--CCCCEEEEEECCCcC-CCcch---HHHHHHHHhhCC-CCEEEeCCcCCHHHHHHHHHCCCCEEEEC
Confidence            468888888772  479999987776543 44433   345666665322 38999999986 99999999999999999


Q ss_pred             ccccCCCC
Q 033625           89 SSVFGAPE   96 (115)
Q Consensus        89 saif~~~d   96 (115)
                      |..++.++
T Consensus       103 t~a~~~p~  110 (232)
T PRK13586        103 TIVFTNFN  110 (232)
T ss_pred             chhhCCHH
Confidence            99887654

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.54  E-value=0.00061  Score=50.95  Aligned_cols=78  Identities=18%  Similarity=0.209  Sum_probs=58.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gs   89 (115)
                      ++.+.++.+.   ..++.++++.+....+++....+.   ++++.+. .++|+.+-|||+. +.+..+.+.|++.+++||
T Consensus       147 ~~~~~~~~~~---~~~~~li~~di~~~G~~~g~~~~~---~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGs  219 (233)
T cd04723         147 GPEELLRRLA---KWPEELIVLDIDRVGSGQGPDLEL---LERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVAS  219 (233)
T ss_pred             CHHHHHHHHH---HhCCeEEEEEcCccccCCCcCHHH---HHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEeh
Confidence            4556666665   448999998887755555544444   4555554 4799999999975 999999999999999999


Q ss_pred             cccCCC
Q 033625           90 SVFGAP   95 (115)
Q Consensus        90 aif~~~   95 (115)
                      +++...
T Consensus       220 al~~g~  225 (233)
T cd04723         220 ALHDGG  225 (233)
T ss_pred             HHHcCC
Confidence            998653

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.49  E-value=0.00096  Score=49.41  Aligned_cols=73  Identities=19%  Similarity=0.241  Sum_probs=52.9

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHH-HHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE-AASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~-l~~~Gad~iv~Gsa   90 (115)
                      ++..+.+. + .++|.+.+..+.+.-..+.+   -++.++++++.. ++|+.+.|||+ .+.+.. +...|+|.+++|++
T Consensus       156 ~~~~~~~~-~-~G~d~i~i~~i~~~g~~~g~---~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a  229 (232)
T TIGR03572       156 VEWAREAE-Q-LGAGEILLNSIDRDGTMKGY---DLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASL  229 (232)
T ss_pred             HHHHHHHH-H-cCCCEEEEeCCCccCCcCCC---CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence            44445544 2 47999999987664333333   255566666653 79999999998 677777 88899999999998


Q ss_pred             c
Q 033625           91 V   91 (115)
Q Consensus        91 i   91 (115)
                      +
T Consensus       230 ~  230 (232)
T TIGR03572       230 F  230 (232)
T ss_pred             h
Confidence            6

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=97.49  E-value=0.00094  Score=51.25  Aligned_cols=76  Identities=18%  Similarity=0.244  Sum_probs=58.7

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ...|++..+.+.+  .+++++=|.=...   |..-.   ++-++++++ . ..++.+=|||+.+.+..+.++|||-+++|
T Consensus        42 ~~dP~~~A~~~~~--~Ga~~lHvVDLdg---g~~~n---~~~i~~i~~-~-~~~vqvGGGIR~e~i~~~l~~Ga~rViig  111 (262)
T PLN02446         42 DKSAAEFAEMYKR--DGLTGGHVIMLGA---DDASL---AAALEALRA-Y-PGGLQVGGGVNSENAMSYLDAGASHVIVT  111 (262)
T ss_pred             CCCHHHHHHHHHH--CCCCEEEEEECCC---CCccc---HHHHHHHHh-C-CCCEEEeCCccHHHHHHHHHcCCCEEEEc
Confidence            3678888888872  4788887755543   33322   445666666 3 58999999999999999999999999999


Q ss_pred             ccccCC
Q 033625           89 SSVFGA   94 (115)
Q Consensus        89 saif~~   94 (115)
                      |..|+.
T Consensus       112 T~Av~~  117 (262)
T PLN02446        112 SYVFRD  117 (262)
T ss_pred             hHHHhC
Confidence            999975

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.49  E-value=0.00097  Score=50.58  Aligned_cols=76  Identities=22%  Similarity=0.302  Sum_probs=55.5

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHH-HcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAA-SAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~-~~Gad~iv~Gs   89 (115)
                      +.+.++.+. + .+++.+++..+...-+.+.+   -++.++++++. .++|+.+.|||+. +.+..+. +.|+|.+++|+
T Consensus       154 ~~e~~~~~~-~-~g~~~ii~~~i~~~G~~~G~---d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~  227 (258)
T PRK01033        154 PLELAKEYE-A-LGAGEILLNSIDRDGTMKGY---DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGS  227 (258)
T ss_pred             HHHHHHHHH-H-cCCCEEEEEccCCCCCcCCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcc
Confidence            445555554 2 47999999888764333333   34556666665 5799999999976 8999987 89999999999


Q ss_pred             cc-cC
Q 033625           90 SV-FG   93 (115)
Q Consensus        90 ai-f~   93 (115)
                      ++ |.
T Consensus       228 a~~~~  232 (258)
T PRK01033        228 LFVFK  232 (258)
T ss_pred             eeeeC
Confidence            96 54

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.48  E-value=0.00052  Score=54.17  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=69.8

Q ss_pred             eEEEecCCCCH---HhHHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcE
Q 033625            3 PGVALKPGTSV---EEVYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDI   63 (115)
Q Consensus         3 ~Glal~p~t~~---~~~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i   63 (115)
                      +.+=|+|+...   ..+...+++ .++|.|.+....+               |++|....+..++-++++++..+ ++||
T Consensus       214 V~vKlsp~~~~~~~~~ia~~l~~-~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipI  292 (344)
T PRK05286        214 LLVKIAPDLSDEELDDIADLALE-HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPI  292 (344)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHH-hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCE
Confidence            34456666553   333333433 5899998876431               34444444557777888877643 6999


Q ss_pred             EEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHHH
Q 033625           64 EVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVED  110 (115)
Q Consensus        64 ~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~-~~~~~~l~~~~~~  110 (115)
                      ...|||+ .+.+.++..+|||.+-+||+++. .++. .+..+.|++.+++
T Consensus       293 ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~  342 (344)
T PRK05286        293 IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR  342 (344)
T ss_pred             EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence            9999995 78888888899999999999864 3654 3333344444443

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.48  E-value=0.0004  Score=51.81  Aligned_cols=76  Identities=16%  Similarity=0.188  Sum_probs=55.4

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      +.+.++.+. + .++..++++.+.-.-+.+-+..+.   ++++++.. +.|+.+.||| +.+.+..+.+.|++.+++|++
T Consensus       149 ~~~~~~~~~-~-~g~~~ii~tdi~~dGt~~G~d~~~---~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~a  222 (229)
T PF00977_consen  149 LEEFAKRLE-E-LGAGEIILTDIDRDGTMQGPDLEL---LKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSA  222 (229)
T ss_dssp             HHHHHHHHH-H-TT-SEEEEEETTTTTTSSS--HHH---HHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHH
T ss_pred             HHHHHHHHH-h-cCCcEEEEeeccccCCcCCCCHHH---HHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehH
Confidence            345555555 2 478999999988765666555444   55555554 7999999999 789999999999999999999


Q ss_pred             ccC
Q 033625           91 VFG   93 (115)
Q Consensus        91 if~   93 (115)
                      ++.
T Consensus       223 l~~  225 (229)
T PF00977_consen  223 LHE  225 (229)
T ss_dssp             HHT
T ss_pred             hhC
Confidence            875

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=97.46  E-value=0.0034  Score=49.21  Aligned_cols=103  Identities=12%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             ecCC-CCHHhHHHhHhCCCCCCEEEEEeee---------------CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 033625            7 LKPG-TSVEEVYPLVEGANPVEMVLVMTVE---------------PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG   70 (115)
Q Consensus         7 l~p~-t~~~~~~~~~~~~~~vD~vlvm~v~---------------pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~   70 (115)
                      |.|. +.+..+...+++ .++|.|.+....               .|++|....+..++-+.++++.. ++||...|||.
T Consensus       170 l~p~~~~~~~~a~~l~~-~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~-~ipIig~GGI~  247 (325)
T cd04739         170 LSPFFSALAHMAKQLDA-AGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV-KASLAASGGVH  247 (325)
T ss_pred             cCCCccCHHHHHHHHHH-cCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc-CCCEEEECCCC
Confidence            4444 344444444444 578888775532               23445555566777788887654 79999999995


Q ss_pred             -hhhHHHHHHcCCCEEEEcccccCC-CCH-HHHHHHHHHHHHHH
Q 033625           71 -PSTIAEAASAGANCIVAGSSVFGA-PEP-AHVISLMRKSVEDA  111 (115)
Q Consensus        71 -~~ni~~l~~~Gad~iv~Gsaif~~-~d~-~~~~~~l~~~~~~~  111 (115)
                       .+.+.+.+.+|||.+-++|+++.. ++. ..-.++|.+.+++.
T Consensus       248 s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~  291 (325)
T cd04739         248 DAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEH  291 (325)
T ss_pred             CHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHc
Confidence             677888888999999999998763 433 45555566555543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.45  E-value=0.0017  Score=48.85  Aligned_cols=87  Identities=15%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHH-cCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAAS-AGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~-~Gad~iv~Gsa   90 (115)
                      .+.++.+. . .++|.+++..+......|.+.   ++.++++++.. ++|+.+.||++. +.+..+.+ .|+|.+++|++
T Consensus       156 ~~~~~~~~-~-~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a  229 (253)
T PRK02083        156 VEWAKEVE-E-LGAGEILLTSMDRDGTKNGYD---LELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGADAALAASI  229 (253)
T ss_pred             HHHHHHHH-H-cCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence            34445544 2 479999987776543445443   45566666653 699999999975 78888776 59999999999


Q ss_pred             ccCC-CCHHHHHHHHH
Q 033625           91 VFGA-PEPAHVISLMR  105 (115)
Q Consensus        91 if~~-~d~~~~~~~l~  105 (115)
                      ++.. -++.+..+.++
T Consensus       230 l~~~~~~~~~~~~~~~  245 (253)
T PRK02083        230 FHFGEITIGELKAYLA  245 (253)
T ss_pred             HHcCCCCHHHHHHHHH
Confidence            8753 45555544443

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=97.44  E-value=0.0014  Score=48.41  Aligned_cols=71  Identities=20%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGS   89 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gs   89 (115)
                      +....++.   +.+|++|+-+-.|  |-+|..|.-..+   .  ++.  ..|+...|||+++|+.++.+. ++.++=+.|
T Consensus       115 l~~~~~~~---~~~d~~L~Ds~~~~~GGtG~~~dw~~l---~--~~~--~~p~~LAGGi~peNv~~ai~~~~p~gvDvsS  184 (210)
T PRK01222        115 LEAAAAYY---GDADGLLLDAYVGLPGGTGKTFDWSLL---P--AGL--AKPWILAGGLNPDNVAEAIRQVRPYGVDVSS  184 (210)
T ss_pred             HHHHHhhh---ccCCEEEEcCCCCCCCCCCCccchHHh---h--hcc--CCCEEEECCCCHHHHHHHHHhcCCCEEEecC
Confidence            33444444   6789999987665  555677654332   1  122  468999999999999998764 788888888


Q ss_pred             cccC
Q 033625           90 SVFG   93 (115)
Q Consensus        90 aif~   93 (115)
                      .+=.
T Consensus       185 gvE~  188 (210)
T PRK01222        185 GVES  188 (210)
T ss_pred             ceEC
Confidence            8753

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0012  Score=49.09  Aligned_cols=80  Identities=28%  Similarity=0.356  Sum_probs=59.2

Q ss_pred             EecCCC--CHHhHHHhHhCCCCCCEEEEEeee---CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            6 ALKPGT--SVEEVYPLVEGANPVEMVLVMTVE---PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         6 al~p~t--~~~~~~~~~~~~~~vD~vlvm~v~---pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      |++...  ..+..+.+.   ..+|++++-+-.   +|-+||.|.-..+...      ....|+...||+|++|+.+..+.
T Consensus       104 ai~v~~~~~~~~~~~~~---~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~------~~~~~~~LAGGL~p~NV~~ai~~  174 (208)
T COG0135         104 AISVSEEGDLELAAREE---GPVDAILLDAKVPGLPGGTGQTFDWNLLPKL------RLSKPVMLAGGLNPDNVAEAIAL  174 (208)
T ss_pred             EEEeCCccchhhhhhcc---CCccEEEEcCCCCCCCCCCCcEECHHHhccc------cccCCEEEECCCCHHHHHHHHHh
Confidence            444443  356666666   789999998864   5778999876554443      24577999999999999999888


Q ss_pred             CC-CEEEEcccccCC
Q 033625           81 GA-NCIVAGSSVFGA   94 (115)
Q Consensus        81 Ga-d~iv~Gsaif~~   94 (115)
                      +. .++=+.|.+=.+
T Consensus       175 ~~p~gvDvSSGVE~~  189 (208)
T COG0135         175 GPPYGVDVSSGVESS  189 (208)
T ss_pred             cCCceEEeccccccC
Confidence            87 777777887443

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.42  E-value=0.0034  Score=49.23  Aligned_cols=102  Identities=12%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             ecCCC-CHHhHHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 033625            7 LKPGT-SVEEVYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG   70 (115)
Q Consensus         7 l~p~t-~~~~~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~   70 (115)
                      +.|.. .+..+...+++ .++|.|.+....+               |++|....+..++-+.++++.. ++||.+.|||.
T Consensus       172 l~p~~~~~~~~a~~l~~-~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-~ipIig~GGI~  249 (334)
T PRK07565        172 LSPYFSNLANMAKRLDA-AGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-GADLAATTGVH  249 (334)
T ss_pred             eCCCchhHHHHHHHHHH-cCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-CCCEEEECCCC
Confidence            34542 34555555544 5799987654322               2344444556667777777654 79999999995


Q ss_pred             -hhhHHHHHHcCCCEEEEcccccCC-CCH-HHHHHHHHHHHHH
Q 033625           71 -PSTIAEAASAGANCIVAGSSVFGA-PEP-AHVISLMRKSVED  110 (115)
Q Consensus        71 -~~ni~~l~~~Gad~iv~Gsaif~~-~d~-~~~~~~l~~~~~~  110 (115)
                       .+.+.++..+|||.+-++++++.. ++. .+-.++|++.+++
T Consensus       250 s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~  292 (334)
T PRK07565        250 DAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMER  292 (334)
T ss_pred             CHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHH
Confidence             788888888999999999998863 332 3455555555543

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed

Probab=97.41  E-value=0.00053  Score=54.36  Aligned_cols=66  Identities=26%  Similarity=0.313  Sum_probs=47.6

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .+|.|++-+..|.++   ...+..+++++..+ . .+++.|++.||||++|+..+.++ +|++.+||.++++
T Consensus       227 ~~d~I~LDn~~~~~g---~l~~~v~~vr~~ld~~g~~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a  294 (343)
T PRK08662        227 RLDGVRLDTPSSRRG---NFRKIVREVRWTLDIRGYEHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA  294 (343)
T ss_pred             cCCEEEcCCCCCCCc---cHHHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence            689999877664211   22334444444322 2 25688999999999999999999 9999999998864

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.39  E-value=0.0014  Score=49.54  Aligned_cols=84  Identities=13%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHc-----C-CCE
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASA-----G-ANC   84 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~-----G-ad~   84 (115)
                      +++.++.+. + .++..++++.+.-.-+.+-+..+.   ++++++. .++|+.+.||++. +.+..+.+.     | ++.
T Consensus       146 ~~e~~~~~~-~-~g~~~ii~tdI~rdGt~~G~d~el---~~~l~~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~g  219 (241)
T PRK14114        146 PVSLLKRLK-E-YGLEEIVHTEIEKDGTLQEHDFSL---TRKIAIE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKG  219 (241)
T ss_pred             HHHHHHHHH-h-cCCCEEEEEeechhhcCCCcCHHH---HHHHHHH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEE
Confidence            345555554 2 368899999988765555555444   4555555 4799999999976 899999886     6 999


Q ss_pred             EEEcccccCCC-CHHHHH
Q 033625           85 IVAGSSVFGAP-EPAHVI  101 (115)
Q Consensus        85 iv~Gsaif~~~-d~~~~~  101 (115)
                      +++|++++... ++++..
T Consensus       220 vivg~Al~~g~i~~~e~~  237 (241)
T PRK14114        220 VIVGRAFLEGILTVEVMK  237 (241)
T ss_pred             EEEehHHHCCCCCHHHHH
Confidence            99999998654 444443

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=97.38  E-value=0.0012  Score=50.34  Aligned_cols=36  Identities=31%  Similarity=0.529  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           59 PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        59 ~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      +++.|++.||||++|+..+.+.|+|++.+|+.+++.
T Consensus       238 ~~~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~  273 (281)
T cd00516         238 PRVKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA  273 (281)
T ss_pred             CceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence            578899999999999999999999999999999875

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.35  E-value=0.0018  Score=48.60  Aligned_cols=80  Identities=13%  Similarity=0.306  Sum_probs=60.7

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.|.+  .++|.+.+.=.+- -.|..   ..++.|+++++.. ..|++++|||+ .+.+..+..+||+-+++||
T Consensus        33 dp~~~a~~~~~--~g~~~l~ivDLd~-~~g~~---~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs  105 (241)
T PRK14024         33 SPLDAALAWQR--DGAEWIHLVDLDA-AFGRG---SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGT  105 (241)
T ss_pred             CHHHHHHHHHH--CCCCEEEEEeccc-cCCCC---ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECc
Confidence            67887777762  4789998876663 22333   2345577776664 68999999997 7899999999999999999


Q ss_pred             cccCCCCH
Q 033625           90 SVFGAPEP   97 (115)
Q Consensus        90 aif~~~d~   97 (115)
                      +.++.++.
T Consensus       106 ~~l~~p~l  113 (241)
T PRK14024        106 AALENPEW  113 (241)
T ss_pred             hHhCCHHH
Confidence            99976654

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.35  E-value=0.0019  Score=47.61  Aligned_cols=78  Identities=10%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gs   89 (115)
                      ++++..+.+. + .++|.+++..+......+..   .++.++++++. .++|+.+-|||+. +.+..+.++|+|.+++||
T Consensus       146 ~~~~~~~~~~-~-~g~~~ii~~~~~~~g~~~g~---~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~  219 (230)
T TIGR00007       146 SLEELAKRLE-E-LGLEGIIYTDISRDGTLSGP---NFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGK  219 (230)
T ss_pred             CHHHHHHHHH-h-CCCCEEEEEeecCCCCcCCC---CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeH
Confidence            4455555555 2 47999998887664333332   35566777665 4799999999975 799999999999999999


Q ss_pred             cccCC
Q 033625           90 SVFGA   94 (115)
Q Consensus        90 aif~~   94 (115)
                      +++..
T Consensus       220 a~~~~  224 (230)
T TIGR00007       220 ALYEG  224 (230)
T ss_pred             HHHcC
Confidence            98754

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.34  E-value=0.002  Score=52.26  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--CCccc------chhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHH
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GGQKF------MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAA   78 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~------~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~   78 (115)
                      |..|..+...-+-   .++|+|.+ +..||.  +++..      .-..+..+.++.+. .++||.+|||| +...+...+
T Consensus       201 ~V~T~e~a~~l~~---aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~-~~vpVIAdGGI~~~~Di~KAL  275 (404)
T PRK06843        201 NIVTKEAALDLIS---VGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKN-TNICIIADGGIRFSGDVVKAI  275 (404)
T ss_pred             ecCCHHHHHHHHH---cCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHH
Confidence            4555555555444   68999985 666663  22211      11233334444333 36999999999 788999999


Q ss_pred             HcCCCEEEEcccccC
Q 033625           79 SAGANCIVAGSSVFG   93 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~   93 (115)
                      .+|||.+.+||++.+
T Consensus       276 alGA~aVmvGs~~ag  290 (404)
T PRK06843        276 AAGADSVMIGNLFAG  290 (404)
T ss_pred             HcCCCEEEEcceeee
Confidence            999999999999976

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=97.33  E-value=0.0043  Score=47.95  Aligned_cols=94  Identities=24%  Similarity=0.406  Sum_probs=63.9

Q ss_pred             EEEecCCCCHHhHHHhHh---CCC-CCCEEEEE-------eeeC--------------CCCCcccchhHHHHHHHHHhhC
Q 033625            4 GVALKPGTSVEEVYPLVE---GAN-PVEMVLVM-------TVEP--------------GFGGQKFMPEMMDKVRSLRNRY   58 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~---~~~-~vD~vlvm-------~v~p--------------G~~gq~~~~~~~~ki~~l~~~~   58 (115)
                      .+=|.|.+..+.+.++.+   ++. ++|.|.+.       .+++              |++|....+..++.++++++..
T Consensus       161 ~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~  240 (294)
T cd04741         161 GVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLL  240 (294)
T ss_pred             EEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhc
Confidence            344667766554444432   212 78888752       1222              2344445677788888888776


Q ss_pred             C-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH
Q 033625           59 P-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP   97 (115)
Q Consensus        59 ~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~   97 (115)
                      + ++||..-|||. .+.+.+++.+|||.+=++|+++. .+..
T Consensus       241 ~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~  282 (294)
T cd04741         241 PSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKV  282 (294)
T ss_pred             CCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchH
Confidence            5 69999999995 77888888899999999999874 4543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.30  E-value=0.0029  Score=48.85  Aligned_cols=61  Identities=23%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH
Q 033625           37 GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP   97 (115)
Q Consensus        37 G~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~   97 (115)
                      |++|....+..++.+.++++.. +++||...|||+ .+.+.+++.+|||.+-++|+++. .++.
T Consensus       228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~  291 (299)
T cd02940         228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTI  291 (299)
T ss_pred             cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcH
Confidence            5677777788899999998876 379999999995 67788888899999999999775 4443

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=97.27  E-value=0.0013  Score=52.03  Aligned_cols=98  Identities=15%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             ceEEEecCCCC------HH---hHHHhHhCCCCCCEEEEEeeeCCCCCccc--chhHHHHHHHHHhhC-CCCcEEEEcCC
Q 033625            2 RPGVALKPGTS------VE---EVYPLVEGANPVEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNRY-PSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~t~------~~---~~~~~~~~~~~vD~vlvm~v~pG~~gq~~--~~~~~~ki~~l~~~~-~~~~i~~dGGI   69 (115)
                      .+|+=+++...      .+   .+...+++ .++|||-|-.-  ++.....  .......++++++.. .++|+.+.|||
T Consensus       217 ~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~-~GvD~I~Vs~g--~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi  293 (353)
T cd04735         217 ILGYRFSPEEPEEPGIRMEDTLALVDKLAD-KGLDYLHISLW--DFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSI  293 (353)
T ss_pred             eEEEEECcccccCCCCCHHHHHHHHHHHHH-cCCCEEEeccC--ccccccccCCcchHHHHHHHHHHhCCCCCEEEECCC
Confidence            35666676421      22   23344433 46899976432  1222111  111223344454443 36899999999


Q ss_pred             -ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           70 -GPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        70 -~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                       +++.+.++++.|+|.+.+|+++...+|+.+.++
T Consensus       294 ~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~  327 (353)
T cd04735         294 NTPDDALEALETGADLVAIGRGLLVDPDWVEKIK  327 (353)
T ss_pred             CCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHH
Confidence             799999999989999999999998888755543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=97.27  E-value=0.0012  Score=50.37  Aligned_cols=76  Identities=16%  Similarity=0.377  Sum_probs=53.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      .+.+.|+|=..+..    +|. ..+++-.++....| +..+++.+||+ ++.+..+..+|+|.+.+|+++.+++||.+.+
T Consensus       177 ~~a~iiGINnRdL~----tf~-vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~  251 (254)
T PF00218_consen  177 AGADIIGINNRDLK----TFE-VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEAL  251 (254)
T ss_dssp             TT-SEEEEESBCTT----TCC-BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHH
T ss_pred             cCCCEEEEeCcccc----Ccc-cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHH
Confidence            57888876544432    121 12233444544443 57788999998 7999999999999999999999999999998


Q ss_pred             HHH
Q 033625          102 SLM  104 (115)
Q Consensus       102 ~~l  104 (115)
                      ++|
T Consensus       252 ~~L  254 (254)
T PF00218_consen  252 REL  254 (254)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            875

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=97.25  E-value=0.0045  Score=47.80  Aligned_cols=77  Identities=17%  Similarity=0.333  Sum_probs=52.7

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ..+...... + .++|+|.+-. +.| ......+.+++.+.++++..+ ++|+.++||| +...+...+.+|||.+-+|+
T Consensus       182 s~~~a~~a~-~-~G~d~I~v~~-~gG-~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~  257 (299)
T cd02809         182 TPEDALRAV-D-AGADGIVVSN-HGG-RQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR  257 (299)
T ss_pred             CHHHHHHHH-H-CCCCEEEEcC-CCC-CCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence            344444444 1 5899987542 222 111234566777888876543 6999999999 57888888889999999998


Q ss_pred             ccc
Q 033625           90 SVF   92 (115)
Q Consensus        90 aif   92 (115)
                      .++
T Consensus       258 ~~l  260 (299)
T cd02809         258 PFL  260 (299)
T ss_pred             HHH
Confidence            854

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.25  E-value=0.0036  Score=46.82  Aligned_cols=78  Identities=17%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G   88 (115)
                      ..|++..+.|.+  .++|.+-+.=.+.- .|..-.   ++-++++.+.. ..|++++|||+. +.+..+..+||+-+|+|
T Consensus        35 ~dp~~~a~~~~~--~g~~~l~i~DLd~~-~~~~~n---~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viig  107 (233)
T cd04723          35 SDPLDVARAYKE--LGFRGLYIADLDAI-MGRGDN---DEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVG  107 (233)
T ss_pred             CCHHHHHHHHHH--CCCCEEEEEeCccc-cCCCcc---HHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEc
Confidence            467777777762  37899988766643 244333   34456665543 589999999987 99999999999999999


Q ss_pred             ccccCC
Q 033625           89 SSVFGA   94 (115)
Q Consensus        89 saif~~   94 (115)
                      |..|+.
T Consensus       108 t~~~~~  113 (233)
T cd04723         108 TETLPS  113 (233)
T ss_pred             ceeccc
Confidence            998876

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.24  E-value=0.0036  Score=50.41  Aligned_cols=102  Identities=20%  Similarity=0.231  Sum_probs=69.0

Q ss_pred             ecCC-CCHHhHHHhHhCCCCCCEEEE-------Eee-----------e-----CCCCCcccchhHHHHHHHHHhhC--CC
Q 033625            7 LKPG-TSVEEVYPLVEGANPVEMVLV-------MTV-----------E-----PGFGGQKFMPEMMDKVRSLRNRY--PS   60 (115)
Q Consensus         7 l~p~-t~~~~~~~~~~~~~~vD~vlv-------m~v-----------~-----pG~~gq~~~~~~~~ki~~l~~~~--~~   60 (115)
                      |.|+ +.+..+...+++ .++|.|.+       |.+           +     -|++|....+..++.+.++++..  ++
T Consensus       175 l~p~~~~~~~~a~~~~~-~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~  253 (420)
T PRK08318        175 LTPNITDIREPARAAKR-GGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRG  253 (420)
T ss_pred             cCCCcccHHHHHHHHHH-CCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCC
Confidence            4444 344455554544 57898874       221           1     15677777788899999998864  37


Q ss_pred             CcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHH
Q 033625           61 LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVE  109 (115)
Q Consensus        61 ~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~-~~~~~~l~~~~~  109 (115)
                      +||..-|||. .+.+-+++.+|||.+=++|+++. .++. ..-.+.|.+.++
T Consensus       254 ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~  305 (420)
T PRK08318        254 LPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMD  305 (420)
T ss_pred             CCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHH
Confidence            9999999996 67777778899999999999775 3333 333444444443

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.23  E-value=0.0021  Score=48.27  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=56.5

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsai   91 (115)
                      .+.++.+. . ..+..++++.+...-+.+-+..+.   ++++++. .++|+.+-||++. +.+..+.+.|++.+++|+++
T Consensus       151 ~~~~~~~~-~-~g~~~ii~tdi~~dGt~~G~~~~l---i~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~  224 (234)
T PRK13587        151 FSFVRQLS-D-IPLGGIIYTDIAKDGKMSGPNFEL---TGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAA  224 (234)
T ss_pred             HHHHHHHH-H-cCCCEEEEecccCcCCCCccCHHH---HHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence            55556655 1 367899999998765555555444   4455444 4799999999975 79999999999999999999


Q ss_pred             cC
Q 033625           92 FG   93 (115)
Q Consensus        92 f~   93 (115)
                      ++
T Consensus       225 ~~  226 (234)
T PRK13587        225 HQ  226 (234)
T ss_pred             Hh
Confidence            86

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=97.23  E-value=0.0043  Score=48.55  Aligned_cols=78  Identities=17%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             HHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEccccc
Q 033625           16 VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSSVF   92 (115)
Q Consensus        16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsaif   92 (115)
                      +...+++ .++|++.+   ++....|.+. +..++.++++++.. ++|+.+-||| +.+.+..+.+ .|+|.+.+|++++
T Consensus       154 ~a~~le~-~G~d~i~v---h~rt~~~~~~G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l  228 (321)
T PRK10415        154 IAQLAED-CGIQALTI---HGRTRACLFNGEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ  228 (321)
T ss_pred             HHHHHHH-hCCCEEEE---ecCccccccCCCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence            3333433 57899964   5443333321 23456677777653 7999999999 8999999886 7999999999988


Q ss_pred             CCCCHH
Q 033625           93 GAPEPA   98 (115)
Q Consensus        93 ~~~d~~   98 (115)
                      ..+.+-
T Consensus       229 ~nP~if  234 (321)
T PRK10415        229 GRPWIF  234 (321)
T ss_pred             cCChHH
Confidence            766543

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=97.22  E-value=0.00048  Score=51.95  Aligned_cols=58  Identities=24%  Similarity=0.473  Sum_probs=42.8

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      +.+.++++...+.++.+=|||+ .+...++.++|||.+|+|.++.+..+.++..+++++
T Consensus       171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~a  229 (230)
T PF01884_consen  171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIKA  229 (230)
T ss_dssp             HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHHH
T ss_pred             HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHhh
Confidence            3455555555789999999996 688889999999999999999876665666555543

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.22  E-value=0.0028  Score=53.07  Aligned_cols=83  Identities=19%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh------------hhHHH
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAE   76 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~------------~ni~~   76 (115)
                      .+.|++..+.|-+  .++|.+.++-+..-..+..-....++-|+++.+.. .+|+.+=|||+.            +.++.
T Consensus       266 ~gdPve~a~~y~~--~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~  342 (538)
T PLN02617        266 LGKPVELAGQYYK--DGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASE  342 (538)
T ss_pred             CCCHHHHHHHHHH--cCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHH
Confidence            5678888888772  58999998877653334444445567778777653 699999999998            88999


Q ss_pred             HHHcCCCEEEEcccccCC
Q 033625           77 AASAGANCIVAGSSVFGA   94 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~   94 (115)
                      +..+|||-+++||+-++.
T Consensus       343 ~l~~GadkV~i~s~Av~~  360 (538)
T PLN02617        343 YFRSGADKISIGSDAVYA  360 (538)
T ss_pred             HHHcCCCEEEEChHHHhC
Confidence            999999999999987764

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.19  E-value=0.0038  Score=45.99  Aligned_cols=77  Identities=10%  Similarity=0.195  Sum_probs=56.2

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcC-CCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAG-ANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~G-ad~iv~Gs   89 (115)
                      +.+..+.+. + .++|.+++..+...-..+..   -++.++++++.. ++|+.+-|||+. +.+..+.+.| +|.+++|+
T Consensus       148 ~~e~~~~~~-~-~g~~~ii~~~~~~~g~~~G~---d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~  221 (233)
T PRK00748        148 AEDLAKRFE-D-AGVKAIIYTDISRDGTLSGP---NVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGR  221 (233)
T ss_pred             HHHHHHHHH-h-cCCCEEEEeeecCcCCcCCC---CHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence            355555555 1 37899999888774333333   245566666654 599999999975 8999999988 99999999


Q ss_pred             cccCC
Q 033625           90 SVFGA   94 (115)
Q Consensus        90 aif~~   94 (115)
                      +++..
T Consensus       222 a~~~~  226 (233)
T PRK00748        222 ALYEG  226 (233)
T ss_pred             HHHcC
Confidence            98754

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=97.18  E-value=0.0011  Score=49.93  Aligned_cols=48  Identities=23%  Similarity=0.452  Sum_probs=40.1

Q ss_pred             CcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           61 LDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        61 ~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      +|++  +.||+ |+.....+.+.|.|++-+||.||++.||...++.+-+..
T Consensus       208 lPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAv  258 (296)
T KOG1606|consen  208 LPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAV  258 (296)
T ss_pred             CceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHH
Confidence            5544  67776 688899999999999999999999999988888776544

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.17  E-value=0.0011  Score=49.39  Aligned_cols=83  Identities=18%  Similarity=0.370  Sum_probs=59.0

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~   87 (115)
                      ...|++..+.|. . .++|.+-+.=.+.-..|..   ..++.|+++.+.. ..|++++|||+. +.+..+.+.||+-+|+
T Consensus        28 ~~dP~~~a~~~~-~-~g~~~l~ivDLdaa~~g~~---~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvi  101 (229)
T PF00977_consen   28 SGDPVEVAKAFN-E-QGADELHIVDLDAAKEGRG---SNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVI  101 (229)
T ss_dssp             CCCHHHHHHHHH-H-TT-SEEEEEEHHHHCCTHH---HHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEE
T ss_pred             CcCHHHHHHHHH-H-cCCCEEEEEEccCcccCch---hHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEe
Confidence            456778777774 2 6899998866554333433   3445677777664 499999999974 5588999999999999


Q ss_pred             cccccCCCCH
Q 033625           88 GSSVFGAPEP   97 (115)
Q Consensus        88 Gsaif~~~d~   97 (115)
                      ||+.|..++.
T Consensus       102 gt~~~~~~~~  111 (229)
T PF00977_consen  102 GTEALEDPEL  111 (229)
T ss_dssp             SHHHHHCCHH
T ss_pred             ChHHhhchhH
Confidence            9999976654

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=97.13  E-value=0.0013  Score=49.34  Aligned_cols=53  Identities=26%  Similarity=0.389  Sum_probs=40.7

Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC
Q 033625           39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        39 ~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .|.+..++.   ++++++...+.|+.+-|||+ .+.++.+.++|||.+|+||.+++.
T Consensus       161 ~g~~v~~e~---i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d  214 (223)
T TIGR01768       161 APEPVPPEL---VAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED  214 (223)
T ss_pred             CCCCcCHHH---HHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence            344444555   55555554469999999996 688889999999999999999864

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.10  E-value=0.0049  Score=50.00  Aligned_cols=79  Identities=23%  Similarity=0.466  Sum_probs=61.9

Q ss_pred             ceEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      .+|.|+++... .+.++.+++  .++|+|.+-+.++-      .....+.++++++.+|+.++.+-+-.|.+....+.++
T Consensus       143 ~v~aavg~~~~~~~~v~~lv~--aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a  214 (404)
T PRK06843        143 RVGAAVSIDIDTIERVEELVK--AHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV  214 (404)
T ss_pred             EEEEEEeCCHHHHHHHHHHHh--cCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc
Confidence            47888876432 467777773  48999998776631      2345667889998888999988889999999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||++.+|
T Consensus       215 GaD~I~vG  222 (404)
T PRK06843        215 GADCLKVG  222 (404)
T ss_pred             CCCEEEEC
Confidence            99999887

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=97.10  E-value=0.0035  Score=46.35  Aligned_cols=41  Identities=29%  Similarity=0.478  Sum_probs=37.7

Q ss_pred             EEEEcCCChh----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           63 IEVDGGLGPS----------TIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        63 i~~dGGI~~~----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..+.+||.++          +.....+.|++++++|+.||+++||.+.+++
T Consensus       165 ~~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~  215 (216)
T cd04725         165 LILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA  215 (216)
T ss_pred             eEEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence            4888999999          9999999999999999999999999888765

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.08  E-value=0.0025  Score=47.67  Aligned_cols=74  Identities=12%  Similarity=0.179  Sum_probs=52.1

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gs   89 (115)
                      ++++.++.+.   ..+..++++.+.-.-+.+-+.     .+   .+..++.|+.+.||++. +.+..+.+.|++.+++|+
T Consensus       144 ~~~~~~~~~~---~~~~~ii~t~i~~dGt~~G~d-----~l---~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~  212 (228)
T PRK04128        144 KVEDAYEMLK---NYVNRFIYTSIERDGTLTGIE-----EI---ERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGK  212 (228)
T ss_pred             CHHHHHHHHH---HHhCEEEEEeccchhcccCHH-----HH---HHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEh
Confidence            3445555544   346788888887643433332     22   22235799999999975 899999999999999999


Q ss_pred             cccCCC
Q 033625           90 SVFGAP   95 (115)
Q Consensus        90 aif~~~   95 (115)
                      +++...
T Consensus       213 al~~g~  218 (228)
T PRK04128        213 ALYEGR  218 (228)
T ss_pred             hhhcCC
Confidence            998654

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.06  E-value=0.0052  Score=51.06  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=57.0

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--------cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--------FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA   78 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--------~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~   78 (115)
                      |..|..+....+-   .++|.|.+ +++||+....        -....+..+.++.+.. ++|+.+||||. ...+...+
T Consensus       296 ~v~t~e~a~~a~~---aGaD~i~v-g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAl  370 (505)
T PLN02274        296 NVVTMYQAQNLIQ---AGVDGLRV-GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-GVPVIADGGISNSGHIVKAL  370 (505)
T ss_pred             cCCCHHHHHHHHH---cCcCEEEE-CCCCCccccCccccccCCCcccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHH
Confidence            5666666665555   78999866 5566632111        0123555566666553 69999999996 66788888


Q ss_pred             HcCCCEEEEcccccCC
Q 033625           79 SAGANCIVAGSSVFGA   94 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~   94 (115)
                      .+|||.+.+||++...
T Consensus       371 a~GA~~V~vGs~~~~t  386 (505)
T PLN02274        371 TLGASTVMMGSFLAGT  386 (505)
T ss_pred             HcCCCEEEEchhhccc
Confidence            9999999999998753

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.04  E-value=0.0062  Score=46.03  Aligned_cols=83  Identities=10%  Similarity=0.028  Sum_probs=58.1

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHH---HcCCCEEEE
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAA---SAGANCIVA   87 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~---~~Gad~iv~   87 (115)
                      +.+.++.+. . .++..+++..+.-.-+.+-+.-+.   ++++++. .+.|+.+.||++. +.+..+.   +.|++.+++
T Consensus       151 ~~~~~~~~~-~-~g~~~ii~tdI~~dGt~~G~d~~l---~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gviv  224 (243)
T TIGR01919       151 LEVLERLLD-S-GGCSRVVVTDSKKDGLSGGPNELL---LEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIG  224 (243)
T ss_pred             HHHHHHHHH-h-CCCCEEEEEecCCcccCCCcCHHH---HHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEE
Confidence            335555554 1 368899999998765555555444   4555555 4799999999986 6887764   459999999


Q ss_pred             cccccCCC-CHHHH
Q 033625           88 GSSVFGAP-EPAHV  100 (115)
Q Consensus        88 Gsaif~~~-d~~~~  100 (115)
                      |++++... +.+++
T Consensus       225 g~Al~~g~i~~~~~  238 (243)
T TIGR01919       225 GKLLYARFFTLEAA  238 (243)
T ss_pred             hHHHHcCCCCHHHH
Confidence            99998654 44443

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=97.02  E-value=0.0099  Score=44.85  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcC-CCEEEEcccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAG-ANCIVAGSSV   91 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~G-ad~iv~Gsai   91 (115)
                      +..+.+. + .++|.+++..+...-..+.+.   ++.++++++. .++|+.+.|||+. +.+.++...| +|.+++|+++
T Consensus       159 ~~~~~l~-~-~G~~~iivt~i~~~g~~~g~~---~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~  232 (254)
T TIGR00735       159 EWAKEVE-K-LGAGEILLTSMDKDGTKSGYD---LELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVF  232 (254)
T ss_pred             HHHHHHH-H-cCCCEEEEeCcCcccCCCCCC---HHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence            3444443 2 479999987766643333333   3445666655 3799999999975 7898988888 9999999998


Q ss_pred             cCCC
Q 033625           92 FGAP   95 (115)
Q Consensus        92 f~~~   95 (115)
                      +...
T Consensus       233 ~~~~  236 (254)
T TIGR00735       233 HYRE  236 (254)
T ss_pred             hCCC
Confidence            7543

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=97.01  E-value=0.0018  Score=47.30  Aligned_cols=67  Identities=22%  Similarity=0.333  Sum_probs=44.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH-cCCCEEEEcccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif~~   94 (115)
                      ..+|++|+- -..|-+|+.|.-..+..+.+   .....|+...||||++|+.++++ ..+.++=+.|.+=.+
T Consensus       115 ~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~---~~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~  182 (197)
T PF00697_consen  115 ESVDYFLLD-SGSGGTGKTFDWSLLKKIVE---SYSPKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETS  182 (197)
T ss_dssp             TT-SEEEEE-SSSTSSSS---GGGGCCCHH---T-GTSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred             ccccEEeEc-cCCCcCCcccCHHHhhhhhh---hcccCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccC
Confidence            455999987 44566788887766555443   22368999999999999999887 899999999887433

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=97.00  E-value=0.0062  Score=47.46  Aligned_cols=77  Identities=21%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCC-CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG-~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G   88 (115)
                      +.++...... + .++|+|.+-+...| +.|.   ...+..+.++++.. ++|+.+.|||.. +.+..+...|||.+.+|
T Consensus       117 ~s~~~a~~a~-~-~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iG  190 (307)
T TIGR03151       117 ASVALAKRME-K-AGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMG  190 (307)
T ss_pred             CCHHHHHHHH-H-cCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence            3444444443 1 58999987666554 3232   23567778887664 699999999964 55888888999999999


Q ss_pred             ccccC
Q 033625           89 SSVFG   93 (115)
Q Consensus        89 saif~   93 (115)
                      +.+..
T Consensus       191 t~f~~  195 (307)
T TIGR03151       191 TRFLC  195 (307)
T ss_pred             hHHhc
Confidence            98553

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PLN02826 dihydroorotate dehydrogenase

Probab=96.96  E-value=0.014  Score=47.33  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             EEecCCCCHHh---HHHhHhCCCCCCEEEEEee----------------eCCCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625            5 VALKPGTSVEE---VYPLVEGANPVEMVLVMTV----------------EPGFGGQKFMPEMMDKVRSLRNRYP-SLDIE   64 (115)
Q Consensus         5 lal~p~t~~~~---~~~~~~~~~~vD~vlvm~v----------------~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~   64 (115)
                      +=|.|+...+.   +...+.+ .++|.|.+-..                .-|++|.+..+.+++-+.++++... ++||.
T Consensus       267 vKlaPdl~~~di~~ia~~a~~-~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipII  345 (409)
T PLN02826        267 VKIAPDLSKEDLEDIAAVALA-LGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLV  345 (409)
T ss_pred             EecCCCCCHHHHHHHHHHHHH-cCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEE
Confidence            33556665433   3333322 57998877542                1246777777888999999987653 69999


Q ss_pred             EEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           65 VDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        65 ~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .+|||. .+.+-+.+.+||+.+=++|+++.
T Consensus       346 gvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~  375 (409)
T PLN02826        346 GCGGVSSGEDAYKKIRAGASLVQLYTAFAY  375 (409)
T ss_pred             EECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence            999996 56888889999999999999654

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=96.95  E-value=0.0017  Score=49.89  Aligned_cols=60  Identities=25%  Similarity=0.344  Sum_probs=49.0

Q ss_pred             CCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc-cCCCCH
Q 033625           38 FGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV-FGAPEP   97 (115)
Q Consensus        38 ~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai-f~~~d~   97 (115)
                      ++|....+.++.-++++++..+ +++|...|||. .+.+.+++.+|||.+=++|++ |+.++.
T Consensus       221 lSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~  283 (295)
T PF01180_consen  221 LSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGV  283 (295)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTH
T ss_pred             cCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHH
Confidence            4666777889999999998865 79999999995 678889999999999999998 665543

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=96.89  E-value=0.0021  Score=47.65  Aligned_cols=73  Identities=22%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             CCCCHHhHHHhHhCC--CCCCEEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCE
Q 033625            9 PGTSVEEVYPLVEGA--NPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANC   84 (115)
Q Consensus         9 p~t~~~~~~~~~~~~--~~vD~vlvm~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~   84 (115)
                      |+.+.|....|...+  .+++++-+  .. .|+ +....   .+.++++++.. +.|+.+-||| +.+.++++.++|||.
T Consensus       129 p~~~~e~~~~~a~aa~~~G~~~i~L--e~~sGa-~~~v~---~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~  201 (205)
T TIGR01769       129 PYNKPEIAAAYCLAAKYFGMKWVYL--EAGSGA-SYPVN---PETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADA  201 (205)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEE--EcCCCC-CCCCC---HHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence            445666666665432  25777665  22 333 22233   34455565554 7999999999 789999999999999


Q ss_pred             EEEc
Q 033625           85 IVAG   88 (115)
Q Consensus        85 iv~G   88 (115)
                      +|+|
T Consensus       202 VVVG  205 (205)
T TIGR01769       202 IVTG  205 (205)
T ss_pred             EEeC
Confidence            9987

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=96.88  E-value=0.0037  Score=49.33  Aligned_cols=94  Identities=19%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             EEEecCCCC---HHhHHHhHhCCCCCCEEEEEee---------------eCCCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625            4 GVALKPGTS---VEEVYPLVEGANPVEMVLVMTV---------------EPGFGGQKFMPEMMDKVRSLRNRYP-SLDIE   64 (115)
Q Consensus         4 Glal~p~t~---~~~~~~~~~~~~~vD~vlvm~v---------------~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~   64 (115)
                      .+=|.|+..   +..+...+.+ .++|.|.+...               .-|++|....+..++.+.++++..+ ++||.
T Consensus       214 ~vKLsP~~~~~~i~~ia~~~~~-~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipii  292 (335)
T TIGR01036       214 LVKIAPDLTESDLEDIADSLVE-LGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPII  292 (335)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHH-hCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence            344667765   3334443323 57898876542               2246677777888888999987654 69999


Q ss_pred             EEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCHH
Q 033625           65 VDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEPA   98 (115)
Q Consensus        65 ~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~~   98 (115)
                      ..|||. .+.+.++..+|||.+-+||+++. .++..
T Consensus       293 g~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~  328 (335)
T TIGR01036       293 GVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLV  328 (335)
T ss_pred             EECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHH
Confidence            999996 56688999999999999999875 35543

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=96.88  E-value=0.006  Score=47.73  Aligned_cols=78  Identities=13%  Similarity=0.269  Sum_probs=56.1

Q ss_pred             hHHHhHhCCCCCCEEEEEeeeCCCCCcccchh--HHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHH-HcCCCEEEEccc
Q 033625           15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE--MMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAA-SAGANCIVAGSS   90 (115)
Q Consensus        15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~--~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~-~~Gad~iv~Gsa   90 (115)
                      .+...+++ .++|++.   |+++...|.+...  -++.++++++.. ++|+..-||| +.+.+..+. ..|+|.+-+|++
T Consensus       152 ~~a~~l~~-~Gvd~i~---Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg  226 (312)
T PRK10550        152 EIADAVQQ-AGATELV---VHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRG  226 (312)
T ss_pred             HHHHHHHh-cCCCEEE---ECCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHH
Confidence            44455544 5799995   6776655544321  346677777654 7999999999 888888865 689999999988


Q ss_pred             ccCCCCH
Q 033625           91 VFGAPEP   97 (115)
Q Consensus        91 if~~~d~   97 (115)
                      .+..+.+
T Consensus       227 ~l~nP~l  233 (312)
T PRK10550        227 ALNIPNL  233 (312)
T ss_pred             hHhCcHH
Confidence            7766644

>PRK08227 autoinducer 2 aldolase; Validated

Probab=96.87  E-value=0.0055  Score=47.10  Aligned_cols=60  Identities=18%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             HHHHHHhhCCCCcEEEEcCCChh------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           50 KVRSLRNRYPSLDIEVDGGLGPS------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        50 ki~~l~~~~~~~~i~~dGGI~~~------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      .++++-+.. ..|+.+.||=+.+      .+....++||.++++|+.||+.+||.+.++.|++++.+
T Consensus       183 ~f~~vv~a~-~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~  248 (264)
T PRK08227        183 GFERITAGC-PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE  248 (264)
T ss_pred             HHHHHHHcC-CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence            344444433 5899999998842      23446789999999999999999999999999988763

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=96.86  E-value=0.0091  Score=45.68  Aligned_cols=85  Identities=16%  Similarity=0.301  Sum_probs=58.0

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      +.++..+.  .+.+.|+|=  |-....-.......+++   ....| +..++.-.||+ ++.+..+...|||.|.+|+++
T Consensus       167 eEl~rAl~--~ga~iIGIN--nRdL~tf~vdl~~t~~l---a~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~sl  239 (254)
T COG0134         167 EELERALK--LGAKIIGIN--NRDLTTLEVDLETTEKL---APLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEAL  239 (254)
T ss_pred             HHHHHHHh--CCCCEEEEe--CCCcchheecHHHHHHH---HhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHH
Confidence            34444441  355666432  23333333334444443   44444 47788999998 999999999999999999999


Q ss_pred             cCCCCHHHHHHHHH
Q 033625           92 FGAPEPAHVISLMR  105 (115)
Q Consensus        92 f~~~d~~~~~~~l~  105 (115)
                      .+++|+.++++++.
T Consensus       240 M~~~~~~~a~~~l~  253 (254)
T COG0134         240 MRADDPEEALRELL  253 (254)
T ss_pred             hcCCCHHHHHHHhh
Confidence            99999998887763

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=96.83  E-value=0.0031  Score=48.45  Aligned_cols=50  Identities=22%  Similarity=0.469  Sum_probs=43.4

Q ss_pred             CcEEEEcCCChhh-------HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           61 LDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        61 ~~i~~dGGI~~~n-------i~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +|+.+.||=+.++       ...+.++||.++++|+-||+.++|...++.+..+..+
T Consensus       203 vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe  259 (265)
T COG1830         203 VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHE  259 (265)
T ss_pred             CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcC
Confidence            9999999988833       4456789999999999999999999999999888754

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=96.81  E-value=0.0095  Score=44.92  Aligned_cols=74  Identities=14%  Similarity=0.191  Sum_probs=55.2

Q ss_pred             hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .+...+++ .++|+|.|   +.++.|...  ..++.|+++++..+++||..-|||+ .+.+.++.++|||.+-+|+++++
T Consensus       152 ~~a~~l~~-aGad~i~V---d~~~~g~~~--a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~  225 (231)
T TIGR00736       152 IDALNLVD-DGFDGIHV---DAMYPGKPY--ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK  225 (231)
T ss_pred             HHHHHHHH-cCCCEEEE---eeCCCCCch--hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence            34444444 68999965   555555422  3567788888865469999999996 58899998999999999998875


Q ss_pred             C
Q 033625           94 A   94 (115)
Q Consensus        94 ~   94 (115)
                      .
T Consensus       226 ~  226 (231)
T TIGR00736       226 G  226 (231)
T ss_pred             C
Confidence            3

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=96.80  E-value=0.0096  Score=44.42  Aligned_cols=44  Identities=20%  Similarity=0.354  Sum_probs=35.9

Q ss_pred             HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           51 VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        51 i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      ++.+..-.+++++...|||+++|++++..+|+..+=+||.++..
T Consensus       144 ~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~  187 (211)
T COG0800         144 LKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPK  187 (211)
T ss_pred             HHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccCh
Confidence            44444446789999999999999999999997777668989864

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.80  E-value=0.0073  Score=45.36  Aligned_cols=75  Identities=11%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa   90 (115)
                      +.+.++.+- + .++.-+++..+...-+.+-+..+.   ++++++. ++. +.+.||++. +.+..+.+.|+|.+++|++
T Consensus       148 ~~e~~~~l~-~-~g~~~ii~tdI~~dGt~~G~d~el---~~~~~~~-~~~-viasGGv~s~~Dl~~l~~~G~~gvivg~A  220 (232)
T PRK13586        148 VIDGIKKVN-E-LELLGIIFTYISNEGTTKGIDYNV---KDYARLI-RGL-KEYAGGVSSDADLEYLKNVGFDYIIVGMA  220 (232)
T ss_pred             HHHHHHHHH-h-cCCCEEEEecccccccCcCcCHHH---HHHHHhC-CCC-EEEECCCCCHHHHHHHHHCCCCEEEEehh
Confidence            344555543 2 367888988888755555555554   4444444 344 888999986 8999999999999999999


Q ss_pred             ccC
Q 033625           91 VFG   93 (115)
Q Consensus        91 if~   93 (115)
                      ++.
T Consensus       221 ly~  223 (232)
T PRK13586        221 FYL  223 (232)
T ss_pred             hhc
Confidence            984

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.77  E-value=0.01  Score=48.97  Aligned_cols=78  Identities=21%  Similarity=0.316  Sum_probs=59.3

Q ss_pred             eEEEecCCCCH-HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTSV-EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~~-~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|-+....... +.++.+++  .++|.|.+-+.+ |..     ....+.++++++.++++|+.++-+.|.+....|.++|
T Consensus       216 Vgaav~~~~~~~~ra~~Lv~--aGVd~i~~D~a~-g~~-----~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G  287 (475)
T TIGR01303       216 IGAAVGINGDVGGKAKALLD--AGVDVLVIDTAH-GHQ-----VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAG  287 (475)
T ss_pred             ehheeeeCccHHHHHHHHHH--hCCCEEEEeCCC-CCc-----HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhC
Confidence            34445544333 56666662  489999887777 432     4566778899988889999997799999999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      ||++-+|
T Consensus       288 ~d~i~vg  294 (475)
T TIGR01303       288 ANIIKVG  294 (475)
T ss_pred             CCEEEEC
Confidence            9999766

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=96.74  E-value=0.0037  Score=48.71  Aligned_cols=73  Identities=22%  Similarity=0.405  Sum_probs=55.4

Q ss_pred             CCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCC-HHHHHHHHHHHHHHH
Q 033625           39 GGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APE-PAHVISLMRKSVEDA  111 (115)
Q Consensus        39 ~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d-~~~~~~~l~~~~~~~  111 (115)
                      +|....+..+..+.++++.. +++||...|||. .+.+-+++.+|||.+=++|+++. .++ +....++|.+.+++.
T Consensus       219 SG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~  295 (310)
T PRK02506        219 GGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMAEK  295 (310)
T ss_pred             CchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            56667788888898888765 479999999994 77888889999999999999775 343 345555566555543

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=96.74  E-value=0.013  Score=46.18  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=53.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCC--------------C---cccchhHHHHHHHHHhhCCCCcEEEEcCC-Chh
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG--------------G---QKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPS   72 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~--------------g---q~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~   72 (115)
                      +..+..+.+. + .++|+|.+-+. .|..              +   ..+...+.+.+.++++...++|+.++||| +.+
T Consensus       191 ~~~~~a~~L~-~-aGvd~I~Vsg~-gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~  267 (333)
T TIGR02151       191 ISKEVAKLLA-D-AGVSAIDVAGA-GGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGL  267 (333)
T ss_pred             CCHHHHHHHH-H-cCCCEEEECCC-CCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHH
Confidence            4555555554 2 58999987432 1210              0   01122234455566553347999999999 899


Q ss_pred             hHHHHHHcCCCEEEEcccccC
Q 033625           73 TIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        73 ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .+...+..|||.+-+|++++.
T Consensus       268 di~kaLalGAd~V~igr~~L~  288 (333)
T TIGR02151       268 DVAKAIALGADAVGMARPFLK  288 (333)
T ss_pred             HHHHHHHhCCCeehhhHHHHH
Confidence            999999999999999988763

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=96.74  E-value=0.014  Score=45.33  Aligned_cols=72  Identities=14%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             CCCCEEEEEeee--CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH-HcCCCEEEEcccccCCCCHHH
Q 033625           24 NPVEMVLVMTVE--PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-SAGANCIVAGSSVFGAPEPAH   99 (115)
Q Consensus        24 ~~vD~vlvm~v~--pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~-~~Gad~iv~Gsaif~~~d~~~   99 (115)
                      .++|++.+-+..  .++.|    +..++.++++++.. ++|+.+-|||+ .+.+..+. ..|+|.+.+|++++..+..-+
T Consensus       159 ~G~d~i~vh~r~~~~~~~~----~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~  233 (319)
T TIGR00737       159 AGAQAVTLHGRTRAQGYSG----EANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFR  233 (319)
T ss_pred             hCCCEEEEEcccccccCCC----chhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHH
Confidence            478999764322  23333    23456677777764 59999999995 77888887 689999999999887776543


Q ss_pred             H
Q 033625          100 V  100 (115)
Q Consensus       100 ~  100 (115)
                      .
T Consensus       234 ~  234 (319)
T TIGR00737       234 Q  234 (319)
T ss_pred             H
Confidence            3

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=96.73  E-value=0.011  Score=46.33  Aligned_cols=81  Identities=22%  Similarity=0.301  Sum_probs=51.4

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCC--Ccc---cchhHHHHHHHHHhhC--CCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG--GQK---FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq~---~~~~~~~ki~~l~~~~--~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      +..+..+.+++  .++|+|.+ .+-||..  ++.   .....+..+.++++..  .++|+.++|||+ ...+...+++||
T Consensus       144 ~t~~~A~~l~~--aGaD~I~v-g~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA  220 (325)
T cd00381         144 VTAEAARDLID--AGADGVKV-GIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGA  220 (325)
T ss_pred             CCHHHHHHHHh--cCCCEEEE-CCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCC
Confidence            44455555551  58999976 3455532  111   1112333344443322  269999999997 688999889999


Q ss_pred             CEEEEcccccCC
Q 033625           83 NCIVAGSSVFGA   94 (115)
Q Consensus        83 d~iv~Gsaif~~   94 (115)
                      |.+.+||.+...
T Consensus       221 ~~VmiGt~fa~t  232 (325)
T cd00381         221 DAVMLGSLLAGT  232 (325)
T ss_pred             CEEEecchhccc
Confidence            999999987653

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=96.73  E-value=0.013  Score=46.08  Aligned_cols=74  Identities=20%  Similarity=0.398  Sum_probs=52.4

Q ss_pred             CCCCEEEEEeee---CCCCCc---ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCC
Q 033625           24 NPVEMVLVMTVE---PGFGGQ---KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~---pG~~gq---~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d   96 (115)
                      .++|++.+-+..   .|+.+.   ...+..++.+.++++..+++|+.+-||| +.+.+.++.+ |+|.+.+|++++..+.
T Consensus       163 aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~  241 (333)
T PRK11815        163 AGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY  241 (333)
T ss_pred             hCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence            479999753221   133332   1223446677788776668999999999 7888988876 7999999999887665


Q ss_pred             HH
Q 033625           97 PA   98 (115)
Q Consensus        97 ~~   98 (115)
                      .-
T Consensus       242 ~~  243 (333)
T PRK11815        242 LL  243 (333)
T ss_pred             HH
Confidence            43

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=96.72  E-value=0.02  Score=42.90  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=57.2

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHH---HcCCCEEEEc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAA---SAGANCIVAG   88 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~---~~Gad~iv~G   88 (115)
                      ++.++.+. + .+++.+++..+...-..+.+   .++.++++++. .++|+.+-|||+. +.+..+.   +.|+|.+++|
T Consensus       149 ~~~~~~l~-~-~G~~~iiv~~~~~~g~~~G~---d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~ig  222 (241)
T PRK14024        149 WEVLERLD-S-AGCSRYVVTDVTKDGTLTGP---NLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVG  222 (241)
T ss_pred             HHHHHHHH-h-cCCCEEEEEeecCCCCccCC---CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEe
Confidence            44455544 2 58999999998874333333   35566777665 3799999999964 6777764   3599999999


Q ss_pred             ccccCCC-CHHHHH
Q 033625           89 SSVFGAP-EPAHVI  101 (115)
Q Consensus        89 saif~~~-d~~~~~  101 (115)
                      ++++... ++.++.
T Consensus       223 ra~~~g~~~~~~~~  236 (241)
T PRK14024        223 KALYAGAFTLPEAL  236 (241)
T ss_pred             HHHHcCCCCHHHHH
Confidence            9987554 444443

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=96.69  E-value=0.0012  Score=48.85  Aligned_cols=43  Identities=30%  Similarity=0.431  Sum_probs=38.4

Q ss_pred             cEEEEcCCChhhHHHHHH-cCCCEEEEcccccCCCCHHHHHHHH
Q 033625           62 DIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAPEPAHVISLM  104 (115)
Q Consensus        62 ~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif~~~d~~~~~~~l  104 (115)
                      .....||++....+.+.. .|+|++|+|++|.+++||.++++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i  226 (226)
T PF00215_consen  183 QGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI  226 (226)
T ss_dssp             TCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred             cccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence            578899999998888866 8999999999999999999998875

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=96.69  E-value=0.018  Score=45.10  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=51.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-c-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-M-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVA   87 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~   87 (115)
                      +.++.....++  .++|.|.+-..+.|  |..- . ..++..+.++++.. ++|+.+.||| +.+.+......|||.+.+
T Consensus       144 ~s~~~A~~a~~--~G~D~iv~qG~eAG--GH~g~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~  218 (330)
T PF03060_consen  144 TSVREARKAAK--AGADAIVAQGPEAG--GHRGFEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQM  218 (330)
T ss_dssp             SSHHHHHHHHH--TT-SEEEEE-TTSS--EE---SSG-HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred             CCHHHHHHhhh--cCCCEEEEeccccC--CCCCccccceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence            44554455442  58999987655544  2222 2 24777788888875 5999999999 566789999999999999


Q ss_pred             ccccc-CCCC
Q 033625           88 GSSVF-GAPE   96 (115)
Q Consensus        88 Gsaif-~~~d   96 (115)
                      |+... ..+.
T Consensus       219 GTrFl~t~Es  228 (330)
T PF03060_consen  219 GTRFLATEES  228 (330)
T ss_dssp             SHHHHTSTTS
T ss_pred             CCeEEecccc
Confidence            98844 4443

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=96.66  E-value=0.051  Score=41.21  Aligned_cols=105  Identities=21%  Similarity=0.309  Sum_probs=67.0

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCC-EEEEEeeeCCCCCc-----ccchhHHHHHHHHHh----------------------
Q 033625            5 VALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQ-----KFMPEMMDKVRSLRN----------------------   56 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD-~vlvm~v~pG~~gq-----~~~~~~~~ki~~l~~----------------------   56 (115)
                      +.+++..-.+.++++.+.+.... .|+..++.++.+..     .+.....+.+.++.+                      
T Consensus        93 vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e~~~ir~  172 (240)
T COG0284          93 VTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAEEVAAIRE  172 (240)
T ss_pred             EEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHHHHHHHHH
Confidence            56677777777777774433333 77888888876553     333333344443332                      


Q ss_pred             hC-CCCcEEEEcCCCh--------h--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           57 RY-PSLDIEVDGGLGP--------S--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        57 ~~-~~~~i~~dGGI~~--------~--ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      .. +++ ..+.=||.+        .  +..+...+|+|.+|+|+.|+.++||.++++++.+.+..
T Consensus       173 ~~g~~~-~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~  236 (240)
T COG0284         173 ILGPDF-LILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIAR  236 (240)
T ss_pred             hcCCCc-EEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHH
Confidence            11 122 333344444        2  24566779999999999999999999999988877654

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.66  E-value=0.015  Score=48.19  Aligned_cols=79  Identities=23%  Similarity=0.378  Sum_probs=58.3

Q ss_pred             ceEEEecCCC-CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t-~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|+++.... .++..+.+++  .++|+|.+-+.+    |  ..+..++.|+++++.+|+++|.+=...|.+....+.++
T Consensus       231 ~Vgaavg~~~~~~~~~~~l~~--ag~d~i~id~a~----G--~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a  302 (495)
T PTZ00314        231 LVGAAISTRPEDIERAAALIE--AGVDVLVVDSSQ----G--NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA  302 (495)
T ss_pred             EEEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC----C--CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc
Confidence            4788888642 2577777773  489998764432    2  22345678899998888888888666778999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||++.+|
T Consensus       303 Gad~I~vg  310 (495)
T PTZ00314        303 GADGLRIG  310 (495)
T ss_pred             CCCEEEEC
Confidence            99999865

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.65  E-value=0.018  Score=47.05  Aligned_cols=79  Identities=22%  Similarity=0.334  Sum_probs=51.0

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCC--Ccc---cchhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHHHHcCCCE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFG--GQK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANC   84 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq~---~~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l~~~Gad~   84 (115)
                      .+....+++  .++|+|-+ ++.||..  .+.   +....+.-+.++++.  ..++|+.+||||. ...+...+++|||.
T Consensus       276 ~~~a~~l~~--aGad~i~v-g~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~  352 (450)
T TIGR01302       276 AEQAKALID--AGADGLRV-GIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADA  352 (450)
T ss_pred             HHHHHHHHH--hCCCEEEE-CCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence            344444441  58999977 6778732  111   111223333333332  1369999999995 67888889999999


Q ss_pred             EEEcccccCC
Q 033625           85 IVAGSSVFGA   94 (115)
Q Consensus        85 iv~Gsaif~~   94 (115)
                      +.+||.+-+.
T Consensus       353 V~~G~~~a~~  362 (450)
T TIGR01302       353 VMLGSLLAGT  362 (450)
T ss_pred             EEECchhhcC
Confidence            9999988653

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=96.65  E-value=0.011  Score=46.36  Aligned_cols=75  Identities=23%  Similarity=0.338  Sum_probs=58.9

Q ss_pred             CCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC-CCH-HHHHHHHHHHHHHH
Q 033625           37 GFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-PEP-AHVISLMRKSVEDA  111 (115)
Q Consensus        37 G~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~-~d~-~~~~~~l~~~~~~~  111 (115)
                      |.+|....+..++-++++++.. .++||.-.|||. .+..-+...+||+.+=++|+++.. +.. .+-.+.|.+.+++.
T Consensus       217 GLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~  295 (310)
T COG0167         217 GLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEK  295 (310)
T ss_pred             CcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHHHc
Confidence            4567778889999999998763 479999999996 566888999999999999997754 554 55566677666653

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=96.62  E-value=0.026  Score=42.67  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.+- . ...+++-+.-.+--. |..-.   .+-++++.+.. ..|++++|||+ .+.+..+.+.|||-+++||
T Consensus        32 ~p~~~a~~~~-~-~g~~~lhivDLd~a~-g~~~n---~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT  104 (243)
T TIGR01919        32 SLESAAKWWE-Q-GGAEWIHLVDLDAAF-GGGNN---EMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGT  104 (243)
T ss_pred             CHHHHHHHHH-h-CCCeEEEEEECCCCC-CCcch---HHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECc
Confidence            3445555554 1 245555544333323 33333   33466665554 48999999996 6777889999999999999


Q ss_pred             cccCCCCH
Q 033625           90 SVFGAPEP   97 (115)
Q Consensus        90 aif~~~d~   97 (115)
                      ..++.++.
T Consensus       105 ~a~~~p~~  112 (243)
T TIGR01919       105 AALENPWW  112 (243)
T ss_pred             hhhCCHHH
Confidence            99876654

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=96.59  E-value=0.022  Score=45.47  Aligned_cols=79  Identities=16%  Similarity=0.352  Sum_probs=57.4

Q ss_pred             ceEEEecCCC-CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t-~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      .+|.++.+.. ..+..+.+++  .++|++.|-+.+ |     ......+.++++++.+|+++|.+=.=.|.+....|.++
T Consensus        98 ~V~aavg~~~~~~er~~~L~~--agvD~ivID~a~-g-----~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~a  169 (352)
T PF00478_consen   98 LVAAAVGTRDDDFERAEALVE--AGVDVIVIDSAH-G-----HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDA  169 (352)
T ss_dssp             CEEEEEESSTCHHHHHHHHHH--TT-SEEEEE-SS-T-----TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHT
T ss_pred             eEEEEecCCHHHHHHHHHHHH--cCCCEEEccccC-c-----cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHc
Confidence            4788888876 4577777763  589999876554 3     22345667888888888787776555789999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||.+-+|
T Consensus       170 Gad~vkVG  177 (352)
T PF00478_consen  170 GADAVKVG  177 (352)
T ss_dssp             T-SEEEES
T ss_pred             CCCEEEEe
Confidence            99999998

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=96.57  E-value=0.027  Score=41.94  Aligned_cols=62  Identities=8%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             EEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           28 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        28 ~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .++++.+.-.-+.+.+.   ++.++++++. .++|+.+.|||+ .+.+..+.+.|+|.+++|++++.
T Consensus       156 ~ii~tdI~~dGt~~G~d---~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~  218 (221)
T TIGR00734       156 GLIVLDIHSVGTMKGPN---LELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK  218 (221)
T ss_pred             EEEEEECCccccCCCCC---HHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence            55555555532334433   4556666665 369999999996 67888899999999999999875

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=96.57  E-value=0.013  Score=44.71  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=51.3

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+.+.++.+++  -++|.||      ..+|+.-..+.++.|+++.+...+..|.+=||||.+|++.+.++|+.-|=.+
T Consensus       129 d~~~al~~l~~--lG~~rIL------TSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~~~H~s  198 (248)
T PRK11572        129 NPLNALKQLAD--LGVARIL------TSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVREVHSS  198 (248)
T ss_pred             CHHHHHHHHHH--cCCCEEE------CCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEeeC
Confidence            45566666662  2688887      3334444667888888887765555599999999999999999999877443

>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.57  E-value=0.089  Score=35.49  Aligned_cols=88  Identities=18%  Similarity=0.284  Sum_probs=65.8

Q ss_pred             EEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHH-hhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLR-NRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~-~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      ||.|.++++++.+++.+   +.++.|-|  -.|.|+ |..|     +.-+.|| ++...=.|-+.|.+=.+.+..+..+|
T Consensus         1 gv~l~~d~~~~~l~~~L---~~l~lI~i--~FP~F~DGRgf-----S~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~G   70 (110)
T PF06073_consen    1 GVWLAPDDDPEELADDL---DRLPLIAI--DFPKFTDGRGF-----SQARLLRERYGYTGELRAVGDVLRDQLFYLRRCG   70 (110)
T ss_pred             CeecCCCCCHHHHHhhc---cCCCEEEE--ECCCcCCchHh-----HHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcC
Confidence            78899999999999999   77877754  568874 4443     4456666 44445679999999999999999999


Q ss_pred             CCEEEEcccccCCCCHHHHHHHHH
Q 033625           82 ANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        82 ad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      .|.+.+-.    ..+++...+.+.
T Consensus        71 Fdsf~l~~----~~~~~~~~~~l~   90 (110)
T PF06073_consen   71 FDSFELRE----DQDPEDALAALS   90 (110)
T ss_pred             CCEEEeCC----CCCHHHHHHHHh
Confidence            99997653    345555544443

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=96.56  E-value=0.021  Score=45.08  Aligned_cols=81  Identities=15%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             HHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCC
Q 033625           16 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGA   94 (115)
Q Consensus        16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~   94 (115)
                      +.+.+++ .++|+|-|-.  ..+..+. ....++..+++++.. ++|+.+.|||+++.+..+++.| +|.+.+|+.+...
T Consensus       246 ~~~~l~~-~g~d~i~vs~--g~~~~~~-~~~~~~~~~~ik~~~-~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~lad  320 (338)
T cd02933         246 LAKELNK-RGLAYLHLVE--PRVAGNP-EDQPPDFLDFLRKAF-KGPLIAAGGYDAESAEAALADGKADLVAFGRPFIAN  320 (338)
T ss_pred             HHHHHHH-cCCcEEEEec--CCCCCcc-cccchHHHHHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhC
Confidence            3344433 3589997521  1222222 222334455555553 6999999999999999998876 9999999999988


Q ss_pred             CCHHHHH
Q 033625           95 PEPAHVI  101 (115)
Q Consensus        95 ~d~~~~~  101 (115)
                      +++-+.+
T Consensus       321 P~~~~k~  327 (338)
T cd02933         321 PDLVERL  327 (338)
T ss_pred             cCHHHHH
Confidence            8875443

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=96.56  E-value=0.021  Score=45.30  Aligned_cols=81  Identities=22%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCC--------C---------cccchhHHHHHHHHHhhCCCCcEEEEcCCC-hh
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG--------G---------QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PS   72 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~--------g---------q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~   72 (115)
                      +..+..+.+. + .++|+|.+-+ ..|..        +         ..+...+.+-|.++++...++||.++|||+ ..
T Consensus       198 ~s~~~a~~l~-~-~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~  274 (352)
T PRK05437        198 ISKETAKRLA-D-AGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGL  274 (352)
T ss_pred             CcHHHHHHHH-H-cCCCEEEECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHH
Confidence            5566666655 2 4899998743 22211        0         011222455566666654579999999996 67


Q ss_pred             hHHHHHHcCCCEEEEcccccCC
Q 033625           73 TIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        73 ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .+..++..|||.+-+|++++.+
T Consensus       275 dv~k~l~~GAd~v~ig~~~l~~  296 (352)
T PRK05437        275 DIAKALALGADAVGMAGPFLKA  296 (352)
T ss_pred             HHHHHHHcCCCEEEEhHHHHHH
Confidence            7888889999999999987653

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=96.56  E-value=0.016  Score=42.81  Aligned_cols=67  Identities=13%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             HHHhHhCCCCCCEEEEEeee--CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH--cCCCEEEEcccc
Q 033625           16 VYPLVEGANPVEMVLVMTVE--PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS--AGANCIVAGSSV   91 (115)
Q Consensus        16 ~~~~~~~~~~vD~vlvm~v~--pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~--~Gad~iv~Gsai   91 (115)
                      +.+|.   ..+|++++-+..  +|-+|+.|.-..+   +++    ...|+...||+|++|+.++..  .+..++=+.|.+
T Consensus       116 ~~~~~---~~~d~~LlDs~~~~~GGtG~~~dw~~~---~~~----~~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGV  185 (207)
T PRK13958        116 INKYK---GFVDLFIIDTPSVSYGGTGQTYDWTIL---KHI----KDIPYLIAGGINSENIQTVEQLKLSHQGYDIASGI  185 (207)
T ss_pred             HHHHH---hhCCEEEEcCCCCCCCcCCcEeChHHh---hhc----cCCCEEEECCCCHHHHHHHHhcCCCCCEEEccccc
Confidence            44554   568999998843  2445677754333   222    235899999999999999763  466777677766


Q ss_pred             c
Q 033625           92 F   92 (115)
Q Consensus        92 f   92 (115)
                      =
T Consensus       186 E  186 (207)
T PRK13958        186 E  186 (207)
T ss_pred             C
Confidence            3

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=96.55  E-value=0.0077  Score=48.04  Aligned_cols=52  Identities=21%  Similarity=0.318  Sum_probs=40.6

Q ss_pred             cchhHHHHHHHH-HhhC-CCCcEEEEcCCChhhHHHHHHcC--CCEEEEcccccCC
Q 033625           43 FMPEMMDKVRSL-RNRY-PSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFGA   94 (115)
Q Consensus        43 ~~~~~~~ki~~l-~~~~-~~~~i~~dGGI~~~ni~~l~~~G--ad~iv~Gsaif~~   94 (115)
                      +.++...++++. .+.. +++.|.+.||||++++.++.++|  +|.+=+|+.|...
T Consensus       261 ~~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~  316 (352)
T PRK07188        261 VNPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI  316 (352)
T ss_pred             ccHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence            445555555542 2333 78999999999999999999999  7999999998875

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.51  E-value=0.026  Score=46.16  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=59.3

Q ss_pred             eEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|-++... ...+..+.+++  .++|.|.|-+.+.      ......+.|+++++.++++++.+=+..|.+....+.++|
T Consensus       215 V~aav~~~~~~~~r~~~L~~--aG~d~I~vd~a~g------~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG  286 (450)
T TIGR01302       215 VGAAVGTREFDKERAEALVK--AGVDVIVIDSSHG------HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG  286 (450)
T ss_pred             EEEEecCchhHHHHHHHHHH--hCCCEEEEECCCC------cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC
Confidence            55666653 23466666662  4799998766552      223567778999988889999998899999999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      ||++.+|
T Consensus       287 ad~i~vg  293 (450)
T TIGR01302       287 ADGLRVG  293 (450)
T ss_pred             CCEEEEC
Confidence            9999765

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.48  E-value=0.033  Score=46.34  Aligned_cols=79  Identities=19%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             ceEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|.|+.+. ...+..+.+++  .++|.|.+-+.+    |  .....++.++++++.+|+.++.+-+=.|.+....+.++
T Consensus       238 ~vgaavg~~~~~~~r~~~l~~--ag~d~i~iD~~~----g--~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a  309 (505)
T PLN02274        238 LVGAAIGTRESDKERLEHLVK--AGVDVVVLDSSQ----G--DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA  309 (505)
T ss_pred             EEEEEEcCCccHHHHHHHHHH--cCCCEEEEeCCC----C--CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc
Confidence            478888874 34578888873  489999876632    2  23456677899998888887777666789999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||++++|
T Consensus       310 GaD~i~vg  317 (505)
T PLN02274        310 GVDGLRVG  317 (505)
T ss_pred             CcCEEEEC
Confidence            99999886

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=96.48  E-value=0.038  Score=44.48  Aligned_cols=88  Identities=18%  Similarity=0.259  Sum_probs=54.0

Q ss_pred             EEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc------cchhHHHHHHHHHhh------CCCCcEEEEcCC-C
Q 033625            4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK------FMPEMMDKVRSLRNR------YPSLDIEVDGGL-G   70 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~------~~~~~~~ki~~l~~~------~~~~~i~~dGGI-~   70 (115)
                      ++=+.+....+.+...++. ..+|+|.|-....|....+      +...+..-+.++++.      ..+++|.++||| +
T Consensus       218 ~vK~~~~~~~~~~a~~~~~-~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~  296 (392)
T cd02808         218 GVKLVAGHGEGDIAAGVAA-AGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRT  296 (392)
T ss_pred             EEEECCCCCHHHHHHHHHH-cCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCC
Confidence            4444444345555555532 3499998766654432111      111122333333321      246999999999 6


Q ss_pred             hhhHHHHHHcCCCEEEEccccc
Q 033625           71 PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        71 ~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      ...+......|||.+-+|+...
T Consensus       297 g~Dv~kalaLGAd~V~ig~~~l  318 (392)
T cd02808         297 GADVAKALALGADAVGIGTAAL  318 (392)
T ss_pred             HHHHHHHHHcCCCeeeechHHH
Confidence            7888888999999999998744

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=96.47  E-value=0.068  Score=35.95  Aligned_cols=89  Identities=15%  Similarity=0.146  Sum_probs=58.0

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      -+.+.+|.+.+...+.+ ...|+|.+-+..+.     ..+...+-++++++..+ ++++.+-|....+...++.++|.|.
T Consensus        32 ~lG~~vp~e~~~~~a~~-~~~d~V~iS~~~~~-----~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~  105 (122)
T cd02071          32 YTGLRQTPEEIVEAAIQ-EDVDVIGLSSLSGG-----HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAE  105 (122)
T ss_pred             ECCCCCCHHHHHHHHHH-cCCCEEEEcccchh-----hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCE
Confidence            46678898877666644 68999987555432     22233344666676644 6667777778888899999999998


Q ss_pred             EEEcccccCCCCHHHHHHHHH
Q 033625           85 IVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        85 iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      ++-.     ..+++..+.-|+
T Consensus       106 ~~~~-----~~~~~~~~~~~~  121 (122)
T cd02071         106 IFGP-----GTSIEEIIDKIR  121 (122)
T ss_pred             EECC-----CCCHHHHHHHHh
Confidence            7443     344555544443

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=96.44  E-value=0.05  Score=43.61  Aligned_cols=93  Identities=17%  Similarity=0.284  Sum_probs=58.6

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ..+.....++  .++|.|.+  .+-|...-...+..++-+.++++.. ++++.+||||+- ..+-..+..|||.+.+|+.
T Consensus       246 ~~eda~~a~~--~G~d~I~V--SnhGGrqld~~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~  320 (361)
T cd04736         246 TAEDAKRCIE--LGADGVIL--SNHGGRQLDDAIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRA  320 (361)
T ss_pred             CHHHHHHHHH--CCcCEEEE--CCCCcCCCcCCccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence            3444444441  58999875  2334332222244667777777654 599999999974 4566777999999999988


Q ss_pred             cc-C-----CCCHHHHHHHHHHHHH
Q 033625           91 VF-G-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        91 if-~-----~~d~~~~~~~l~~~~~  109 (115)
                      +. .     .+-..+.++.|++.++
T Consensus       321 ~l~~la~~G~~gv~~~l~~l~~el~  345 (361)
T cd04736         321 TLYGLAARGEAGVSEVLRLLKEEID  345 (361)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            54 2     2233455555555544

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=96.43  E-value=0.051  Score=41.78  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=56.2

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc--CCCEEEEcc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGS   89 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~--Gad~iv~Gs   89 (115)
                      .+.+..+.+  ..++.+++=.+.-.-..+-+..   +.++++++. .++|+.+.||++ .+.+..|.+.  |...+++|+
T Consensus       166 ~e~~~~~~~--~g~~eii~TdI~rDGtl~G~d~---el~~~l~~~-~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGk  239 (262)
T PLN02446        166 DEETLEFLA--AYCDEFLVHGVDVEGKRLGIDE---ELVALLGEH-SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGS  239 (262)
T ss_pred             HHHHHHHHH--hCCCEEEEEEEcCCCcccCCCH---HHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEe
Confidence            444456552  3589998877766444444443   445555555 579999999996 7888888887  578899999


Q ss_pred             cc--cCCC-CHHHH
Q 033625           90 SV--FGAP-EPAHV  100 (115)
Q Consensus        90 ai--f~~~-d~~~~  100 (115)
                      ++  |... +.+++
T Consensus       240 Al~~y~g~~~l~ea  253 (262)
T PLN02446        240 ALDIFGGNLPYDDV  253 (262)
T ss_pred             eHHHhCCCccHHHH
Confidence            99  7644 33433

>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated

Probab=96.41  E-value=0.035  Score=46.00  Aligned_cols=106  Identities=21%  Similarity=0.311  Sum_probs=68.7

Q ss_pred             EEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-Cc-------ccchhH---------------------HHHHHHH
Q 033625            4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQ-------KFMPEM---------------------MDKVRSL   54 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq-------~~~~~~---------------------~~ki~~l   54 (115)
                      .+.+||-+-.+.++++++..++-=+|++-+.|||-. =|       +.-...                     .+.++++
T Consensus       118 AiTv~pymG~Dsl~pfl~~~~kgvfvL~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~~g~VvGAT~p~~~~~i  197 (477)
T PRK05500        118 AVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQLGLEVGTTNPEVLAKI  197 (477)
T ss_pred             EEEECCccCccchHHHHhcCCCcEEEEEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCceEEEECCCChHHHHHH
Confidence            578999999999999994411222666667899832 11       111111                     1223444


Q ss_pred             HhhCCCCcEE-----EEcCCChhhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625           55 RNRYPSLDIE-----VDGGLGPSTIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQK  113 (115)
Q Consensus        55 ~~~~~~~~i~-----~dGGI~~~ni~~l~~~Gad------~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~  113 (115)
                      |+..|+.+|.     +=||    ++.++..+|.|      .+.++++|..++||.+.++.|++.+...+.
T Consensus       198 R~~~p~~~iL~PGiGAQGg----~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~~  263 (477)
T PRK05500        198 RQIAPERLILLRSIWAEKG----NLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIRQ  263 (477)
T ss_pred             HHhCCCCEEEccccccCCC----CHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            4444443322     3333    36666778887      889999999999999999999998876543

>PLN02535 glycolate oxidase

Probab=96.40  E-value=0.082  Score=42.40  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      .+......+  .++|.|.+-  +-|-....+.+.++.-|.++++.. .++||.+||||. ...+...+..|||.+.+|+.
T Consensus       234 ~~dA~~a~~--~GvD~I~vs--n~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~  309 (364)
T PLN02535        234 REDAIKAVE--VGVAGIIVS--NHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRP  309 (364)
T ss_pred             HHHHHHHHh--cCCCEEEEe--CCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence            344444441  589999753  233222234456677777776543 469999999997 56677788999999999988


Q ss_pred             cc
Q 033625           91 VF   92 (115)
Q Consensus        91 if   92 (115)
                      .+
T Consensus       310 ~l  311 (364)
T PLN02535        310 VI  311 (364)
T ss_pred             HH
Confidence            64

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=96.39  E-value=0.05  Score=43.92  Aligned_cols=95  Identities=19%  Similarity=0.239  Sum_probs=60.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGP-STIAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G   88 (115)
                      +..+..+..++  .++|.|.|-  +-|-...+..+.+++-|.++++.. .++|+.+||||.- ..+-..+..|||.+-+|
T Consensus       262 ~~~~dA~~a~~--~G~d~I~vs--nhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iG  337 (383)
T cd03332         262 LHPDDARRAVE--AGVDGVVVS--NHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIG  337 (383)
T ss_pred             CCHHHHHHHHH--CCCCEEEEc--CCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEc
Confidence            44555555441  589998763  333222233455666777776654 3699999999974 55777779999999999


Q ss_pred             cccc-C-----CCCHHHHHHHHHHHHH
Q 033625           89 SSVF-G-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        89 saif-~-----~~d~~~~~~~l~~~~~  109 (115)
                      +.+. .     .+-..+.++.|++.++
T Consensus       338 r~~l~~l~~~G~~gv~~~l~~l~~El~  364 (383)
T cd03332         338 RPYAYGLALGGEDGVEHVLRNLLAELD  364 (383)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            8743 2     1223455555555444

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=96.36  E-value=0.032  Score=42.44  Aligned_cols=99  Identities=21%  Similarity=0.322  Sum_probs=68.7

Q ss_pred             EEEecCCCCHH-hHHHhHhCCCCCCEEEEEee-eCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH
Q 033625            4 GVALKPGTSVE-EVYPLVEGANPVEMVLVMTV-EPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS   79 (115)
Q Consensus         4 Glal~p~t~~~-~~~~~~~~~~~vD~vlvm~v-~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~   79 (115)
                      |...-|.|.-+ .+..-+   ..+-..-+|+- -|=-+|+-.. ++   -|+-+++.. ++|+.||-|| ++....+..+
T Consensus       130 GF~VlPY~~dD~v~arrL---ee~GcaavMPl~aPIGSg~G~~n~~---~l~iiie~a-~VPviVDAGiG~pSdAa~aME  202 (262)
T COG2022         130 GFVVLPYTTDDPVLARRL---EEAGCAAVMPLGAPIGSGLGLQNPY---NLEIIIEEA-DVPVIVDAGIGTPSDAAQAME  202 (262)
T ss_pred             CCEEeeccCCCHHHHHHH---HhcCceEeccccccccCCcCcCCHH---HHHHHHHhC-CCCEEEeCCCCChhHHHHHHh
Confidence            33444444443 334444   23344455654 2433555543 33   355666665 8999999999 5788999999


Q ss_pred             cCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        80 ~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      .|+|.+.+-++|-.+.||...++.++..++
T Consensus       203 lG~DaVL~NTAiA~A~DPv~MA~Af~~Av~  232 (262)
T COG2022         203 LGADAVLLNTAIARAKDPVAMARAFALAVE  232 (262)
T ss_pred             cccceeehhhHhhccCChHHHHHHHHHHHH
Confidence            999999999999999999999999987665

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.32  E-value=0.03  Score=46.19  Aligned_cols=77  Identities=26%  Similarity=0.438  Sum_probs=57.4

Q ss_pred             eEEEec--CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            3 PGVALK--PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         3 ~Glal~--p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +|-++.  | .+.+..+.+++  .++|.+.+-+.+ |   +  ....++.++.+++..|+.|+.+-++.|.+....+.++
T Consensus       219 V~aai~~~~-~~~e~a~~L~~--agvdvivvD~a~-g---~--~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a  289 (486)
T PRK05567        219 VGAAVGVGA-DNEERAEALVE--AGVDVLVVDTAH-G---H--SEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA  289 (486)
T ss_pred             EEeecccCc-chHHHHHHHHH--hCCCEEEEECCC-C---c--chhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc
Confidence            344444  4 44788888873  489966433222 2   2  2457778899998888899999999999999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||++.+|
T Consensus       290 Gad~i~vg  297 (486)
T PRK05567        290 GADAVKVG  297 (486)
T ss_pred             CCCEEEEC
Confidence            99999876

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=96.31  E-value=0.065  Score=40.76  Aligned_cols=89  Identities=12%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~G   88 (115)
                      ++.+..+.+. + .++..+++=-+.-.-.-+-...+   .++++.+.. ++|+.+.|||+ .+.+..+.+. |+..+++|
T Consensus       148 ~~~~l~~~~~-~-~g~~~ii~TdI~~DGtl~G~n~~---l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG  221 (241)
T COG0106         148 ELEELAKRLE-E-VGLAHILYTDISRDGTLSGPNVD---LVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVG  221 (241)
T ss_pred             CHHHHHHHHH-h-cCCCeEEEEecccccccCCCCHH---HHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEe
Confidence            3445566665 1 24666665444332121222223   355555554 89999999996 6889999999 89999999


Q ss_pred             ccccCCC-CHHHHHHHHH
Q 033625           89 SSVFGAP-EPAHVISLMR  105 (115)
Q Consensus        89 saif~~~-d~~~~~~~l~  105 (115)
                      +|++... ++.++.+.++
T Consensus       222 ~ALy~g~~~l~ea~~~~~  239 (241)
T COG0106         222 RALYEGKFTLEEALACVR  239 (241)
T ss_pred             hHHhcCCCCHHHHHHHHh
Confidence            9998654 6777776665

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=96.30  E-value=0.042  Score=43.38  Aligned_cols=80  Identities=13%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             HhHhCCCCCCEEEEEeeeCCC----CCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccc
Q 033625           18 PLVEGANPVEMVLVMTVEPGF----GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSV   91 (115)
Q Consensus        18 ~~~~~~~~vD~vlvm~v~pG~----~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsai   91 (115)
                      ..+++ .++|||-|-   .|.    ..+.+.....+-.+++++. .++|+.+-|+| +++.+.++++.| +|.+.+|+.+
T Consensus       234 ~~l~~-~gvD~i~vs---~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~  308 (337)
T PRK13523        234 KWMKE-QGVDLIDVS---SGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGREL  308 (337)
T ss_pred             HHHHH-cCCCEEEeC---CCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHH
Confidence            34433 468999753   331    1111111122334556554 36899999998 688899998877 9999999999


Q ss_pred             cCCCCHHHHHH
Q 033625           92 FGAPEPAHVIS  102 (115)
Q Consensus        92 f~~~d~~~~~~  102 (115)
                      ...+++.+.+.
T Consensus       309 iadP~~~~k~~  319 (337)
T PRK13523        309 LRNPYFPRIAA  319 (337)
T ss_pred             HhCccHHHHHH
Confidence            99888755443

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=96.28  E-value=0.041  Score=46.69  Aligned_cols=73  Identities=18%  Similarity=0.130  Sum_probs=49.9

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCC--CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH-cCCC--EEEE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPG--FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGAN--CIVA   87 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG--~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~-~Gad--~iv~   87 (115)
                      ++.+.+|.   +.+|++|+-+-.|+  -+|+.|.-..+   +   ......|+.+.|||+++|+.++++ ..+.  ++=+
T Consensus       119 ~~~~~~~~---~~~d~~LlDs~~~~~GGtG~~fdw~~~---~---~~~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDv  189 (610)
T PRK13803        119 FEVLDEYR---DHVKYFLFDNKTKIYGGSGKSFDWEKF---Y---NYNFKFPFFLSGGLSPTNFDRIINLTHPQILGIDV  189 (610)
T ss_pred             HHHHHhhh---ccCCEEEEcCCCCCCCCCCCccChHHh---h---hcccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEc
Confidence            45566666   67899999986654  45667764433   2   222346899999999999999876 4455  5666


Q ss_pred             cccccCC
Q 033625           88 GSSVFGA   94 (115)
Q Consensus        88 Gsaif~~   94 (115)
                      .|.+-.+
T Consensus       190 sSGvE~~  196 (610)
T PRK13803        190 SSGFEDS  196 (610)
T ss_pred             cCcccCC
Confidence            7777643

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.27  E-value=0.056  Score=42.76  Aligned_cols=81  Identities=22%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS   79 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~   79 (115)
                      +..|+.+...-+-   .++|++.+ +..||..       |.....-.+..+.++++.. ++|+.+||||. ...+...+.
T Consensus       147 ~V~t~e~a~~l~~---aGad~i~v-g~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa  221 (326)
T PRK05458        147 NVGTPEAVRELEN---AGADATKV-GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIR  221 (326)
T ss_pred             ecCCHHHHHHHHH---cCcCEEEE-CCCCCcccccccccCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHH
Confidence            3445444433333   68999654 4455521       1111111444566666543 69999999995 677888889


Q ss_pred             cCCCEEEEcccccC
Q 033625           80 AGANCIVAGSSVFG   93 (115)
Q Consensus        80 ~Gad~iv~Gsaif~   93 (115)
                      +|||.+.+|+++.+
T Consensus       222 ~GA~aV~vG~~~~~  235 (326)
T PRK05458        222 FGATMVMIGSLFAG  235 (326)
T ss_pred             hCCCEEEechhhcC
Confidence            99999999998874

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=96.27  E-value=0.041  Score=45.26  Aligned_cols=62  Identities=24%  Similarity=0.283  Sum_probs=47.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      ..+|++++-+ .+|-+|+.|.-..+   .   ... ..|+...||+|++|+.+..+.++.++=+.|.+=.
T Consensus       373 ~~~d~~LlDs-~~GGtG~~~DW~~l---~---~~~-~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~  434 (454)
T PRK09427        373 QHVDRYLLDN-GQGGTGQTFDWSLL---P---GQS-LDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVES  434 (454)
T ss_pred             cCCCEEEEcC-CCCCCCCccChHHh---h---hcc-cCCEEEECCCCHHHHHHHHhcCCCEEEeCCcccC
Confidence            3489999887 55667888864332   2   122 5689999999999999988899999888888853

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.27  E-value=0.014  Score=46.83  Aligned_cols=78  Identities=22%  Similarity=0.344  Sum_probs=48.9

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCC--CCcccc---hhHHHHHHHHHh---h------CCCCcEEEEcCC-ChhhHHHH
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGF--GGQKFM---PEMMDKVRSLRN---R------YPSLDIEVDGGL-GPSTIAEA   77 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~~---~~~~~ki~~l~~---~------~~~~~i~~dGGI-~~~ni~~l   77 (115)
                      .+..+.+++  .++|.|.+ ...||.  ++....   -..+..+.+..+   .      ..++|+.+|||| +...+...
T Consensus       198 ~e~A~~l~~--aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakA  274 (368)
T PRK08649        198 YTTALHLMR--TGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKA  274 (368)
T ss_pred             HHHHHHHHH--cCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHH
Confidence            344444441  68999976 566762  111111   112223333221   1      125899999999 57788888


Q ss_pred             HHcCCCEEEEcccccC
Q 033625           78 ASAGANCIVAGSSVFG   93 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~   93 (115)
                      +.+|||.+.+||.+..
T Consensus       275 lalGAd~Vm~Gs~fa~  290 (368)
T PRK08649        275 IACGADAVMLGSPLAR  290 (368)
T ss_pred             HHcCCCeecccchhcc
Confidence            8999999999998865

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=96.26  E-value=0.022  Score=45.98  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=52.4

Q ss_pred             CCcccchhHHHHHHHHHhhCC-----CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC-CC-HHHHHHHHHHHHHH
Q 033625           39 GGQKFMPEMMDKVRSLRNRYP-----SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-PE-PAHVISLMRKSVED  110 (115)
Q Consensus        39 ~gq~~~~~~~~ki~~l~~~~~-----~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~-~d-~~~~~~~l~~~~~~  110 (115)
                      +|....+.++..+.++++...     ++||...|||. .+.+-+++.+||+.+=++|+++.. ++ +.+..+.|.+.+++
T Consensus       244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~~  323 (385)
T PLN02495        244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMKK  323 (385)
T ss_pred             cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHHH
Confidence            444455667777777766532     58999999995 788889999999999999998764 43 34555566666554

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=96.25  E-value=0.041  Score=43.13  Aligned_cols=52  Identities=15%  Similarity=0.271  Sum_probs=41.9

Q ss_pred             HHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      +..+++++.. ++|+.+.|++ +++.+.++++.| +|++.+|+.+...+++.+.+
T Consensus       282 ~~~~~ik~~v-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~  335 (338)
T cd04733         282 EFAEKIRKVT-KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKL  335 (338)
T ss_pred             HHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHH
Confidence            4455666654 7999999999 689999988876 99999999999888875544

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK06852 aldolase; Validated

Probab=96.24  E-value=0.021  Score=44.77  Aligned_cols=62  Identities=11%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCChh------hHHHHHH-cCCCEEEEcccccCCCCH--HHHHHHHHHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGLGPS------TIAEAAS-AGANCIVAGSSVFGAPEP--AHVISLMRKSVED  110 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI~~~------ni~~l~~-~Gad~iv~Gsaif~~~d~--~~~~~~l~~~~~~  110 (115)
                      +.++++-+....+|+.+.||=+.+      .+....+ +|+.++++|+.||+.++|  .+.++.++.++.+
T Consensus       219 e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~  289 (304)
T PRK06852        219 ELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVE  289 (304)
T ss_pred             HHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence            445555444435899999998853      2333446 899999999999999888  8899999987753

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=96.21  E-value=0.041  Score=47.53  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=56.1

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      .+.+.|.|=.-+--  .-.....   +-.+|....| +..++.-+||+ ++.+..+.++|+|.|.+|+++.+++||.+.+
T Consensus       179 ~ga~iiGINnRdL~--tf~vd~~---~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~  253 (695)
T PRK13802        179 AGAKVIGINARNLK--DLKVDVN---KYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAV  253 (695)
T ss_pred             CCCCEEEEeCCCCc--cceeCHH---HHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHH
Confidence            47887765433332  1122233   3344444444 45567778887 7999999999999999999999999999998


Q ss_pred             HHHHHH
Q 033625          102 SLMRKS  107 (115)
Q Consensus       102 ~~l~~~  107 (115)
                      ++|...
T Consensus       254 ~~l~~~  259 (695)
T PRK13802        254 ERLVKA  259 (695)
T ss_pred             HHHHhc
Confidence            888653

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.20  E-value=0.038  Score=45.86  Aligned_cols=76  Identities=20%  Similarity=0.349  Sum_probs=49.3

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcc-----c-ch--hHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCE
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQK-----F-MP--EMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANC   84 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~-----~-~~--~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~   84 (115)
                      +..+.+++  .++|+|-+ ++.||.....     + .|  ..+..+.++.+. .++|+.+|||| +...+....++|||.
T Consensus       294 ~~a~~~~~--aGad~I~v-g~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~-~~v~vIadGGi~~~~di~kAla~GA~~  369 (495)
T PTZ00314        294 DQAKNLID--AGADGLRI-GMGSGSICITQEVCAVGRPQASAVYHVARYARE-RGVPCIADGGIKNSGDICKALALGADC  369 (495)
T ss_pred             HHHHHHHH--cCCCEEEE-CCcCCcccccchhccCCCChHHHHHHHHHHHhh-cCCeEEecCCCCCHHHHHHHHHcCCCE
Confidence            44444441  58998866 6677742211     1 11  222333333333 36999999996 577888888999999


Q ss_pred             EEEcccccC
Q 033625           85 IVAGSSVFG   93 (115)
Q Consensus        85 iv~Gsaif~   93 (115)
                      +.+|+.+-+
T Consensus       370 Vm~G~~~a~  378 (495)
T PTZ00314        370 VMLGSLLAG  378 (495)
T ss_pred             EEECchhcc
Confidence            999998765

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.10  E-value=0.055  Score=42.77  Aligned_cols=79  Identities=14%  Similarity=0.246  Sum_probs=53.9

Q ss_pred             eEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHc
Q 033625            3 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASA   80 (115)
Q Consensus         3 ~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~   80 (115)
                      +|+++..... .+...+++++-..+|+|.+-+.++      ......+.|+++++.+|+.++.+ +=+ |.+....+.++
T Consensus        88 v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~g------h~~~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~~a  160 (326)
T PRK05458         88 ASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHG------HSDSVINMIQHIKKHLPETFVIAGNVG-TPEAVRELENA  160 (326)
T ss_pred             EEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCC------chHHHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHHHc
Confidence            4556654322 356667773100349999888773      22345556888888888777666 223 89999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |+|.+.+|
T Consensus       161 Gad~i~vg  168 (326)
T PRK05458        161 GADATKVG  168 (326)
T ss_pred             CcCEEEEC
Confidence            99999877

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.09  E-value=0.04  Score=45.45  Aligned_cols=79  Identities=24%  Similarity=0.352  Sum_probs=50.6

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCC--CCcc---cchhHHHHHHHHHhhC--CCCcEEEEcCCC-hhhHHHHHHcCCCE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGF--GGQK---FMPEMMDKVRSLRNRY--PSLDIEVDGGLG-PSTIAEAASAGANC   84 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~---~~~~~~~ki~~l~~~~--~~~~i~~dGGI~-~~ni~~l~~~Gad~   84 (115)
                      .+....+.+  .++|+|-+ ++-||.  +++.   +....+.-+.++++..  .++|+.+||||+ ...+...+.+|||.
T Consensus       280 ~e~a~~l~~--aGad~i~v-g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~  356 (486)
T PRK05567        280 AEAARALIE--AGADAVKV-GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASA  356 (486)
T ss_pred             HHHHHHHHH--cCCCEEEE-CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCE
Confidence            344444441  58999875 234441  2222   2222444454444432  369999999996 66788888999999


Q ss_pred             EEEcccccCC
Q 033625           85 IVAGSSVFGA   94 (115)
Q Consensus        85 iv~Gsaif~~   94 (115)
                      +.+||+|-+.
T Consensus       357 v~~G~~~a~~  366 (486)
T PRK05567        357 VMLGSMLAGT  366 (486)
T ss_pred             EEECcccccc
Confidence            9999999764

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=96.07  E-value=0.074  Score=40.45  Aligned_cols=82  Identities=13%  Similarity=0.267  Sum_probs=59.3

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      ++|++..+.+..  .++.++=+.=.+--+.|+.-..+.   ++++.+.. +.|+++=|||+ .+.+..++++|++.+++|
T Consensus        31 ~~P~~~a~~~~~--~Ga~~lHlVDLdgA~~g~~~n~~~---i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiG  104 (241)
T COG0106          31 DDPLEVAKKWSD--QGAEWLHLVDLDGAKAGGPRNLEA---IKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIG  104 (241)
T ss_pred             CCHHHHHHHHHH--cCCcEEEEeeccccccCCcccHHH---HHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEe
Confidence            467777777762  467887776556666666655444   45555443 78999999997 566778999999999999


Q ss_pred             ccccCCCCH
Q 033625           89 SSVFGAPEP   97 (115)
Q Consensus        89 saif~~~d~   97 (115)
                      |.-++.++.
T Consensus       105 t~av~~p~~  113 (241)
T COG0106         105 TAAVKNPDL  113 (241)
T ss_pred             cceecCHHH
Confidence            987665543

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=96.06  E-value=0.22  Score=34.44  Aligned_cols=92  Identities=17%  Similarity=0.112  Sum_probs=59.5

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCC------ChhhHHHH
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGL------GPSTIAEA   77 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI------~~~ni~~l   77 (115)
                      +-|.+++|.+.+.+.+.+ ..+|+|.+-+..+.     -.....+-++++++.. +++++.+=|.+      -.+..+.+
T Consensus        35 i~LG~~vp~e~i~~~a~~-~~~d~V~lS~~~~~-----~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l  108 (137)
T PRK02261         35 INLGVMTSQEEFIDAAIE-TDADAILVSSLYGH-----GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKF  108 (137)
T ss_pred             EECCCCCCHHHHHHHHHH-cCCCEEEEcCcccc-----CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHH
Confidence            346788998887777744 68999987554442     2223344466666663 36777777766      34556789


Q ss_pred             HHcCCCEEEEcccccC-CCCHHHHHHHHHHHH
Q 033625           78 ASAGANCIVAGSSVFG-APEPAHVISLMRKSV  108 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~-~~d~~~~~~~l~~~~  108 (115)
                      .+.|+|.      +|. ..++.+.+..+++.+
T Consensus       109 ~~~G~~~------vf~~~~~~~~i~~~l~~~~  134 (137)
T PRK02261        109 KEMGFDR------VFPPGTDPEEAIDDLKKDL  134 (137)
T ss_pred             HHcCCCE------EECcCCCHHHHHHHHHHHh
Confidence            9999764      454 346677777777654

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=96.04  E-value=0.098  Score=39.24  Aligned_cols=68  Identities=21%  Similarity=0.213  Sum_probs=47.7

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ...+...+++ .++|++-+-+   ++.|.   ...++.+++++   .++||..-||| +.+.+.++..+|+|.+.+|++
T Consensus       154 ~~~la~~l~~-aG~d~ihv~~---~~~g~---~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~  222 (233)
T cd02911         154 DEELARLIEK-AGADIIHVDA---MDPGN---HADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA  222 (233)
T ss_pred             HHHHHHHHHH-hCCCEEEECc---CCCCC---CCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence            3444445544 5799765433   33331   12345566665   47999999999 789999999999999999998

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PLN02363 phosphoribosylanthranilate isomerase

Probab=95.99  E-value=0.076  Score=40.58  Aligned_cols=64  Identities=22%  Similarity=0.282  Sum_probs=44.1

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH-cCCCEEEEccccc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVF   92 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif   92 (115)
                      ..+|++|+-+- .|-+|..|.-..+   . ........|+...|||+++|+.++.+ .++.++=+.|.+=
T Consensus       168 ~~~D~~LlDs~-~GGtG~t~DW~~l---~-~~~~~~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE  232 (256)
T PLN02363        168 HLADWILVDSA-TGGSGKGFNWQNF---K-LPSVRSRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGIC  232 (256)
T ss_pred             ccCCEEEEeCC-CCCCCCccCHHHh---c-ccccccCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCccc
Confidence            45899998864 3667787764332   1 00112245899999999999999764 6777777777774

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=95.91  E-value=0.13  Score=39.25  Aligned_cols=88  Identities=18%  Similarity=0.277  Sum_probs=57.0

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      +.+.+-++- ..+|.|.+-.-.   +|...   .++.|+.+++.. +.|+.+=-|++++|+..+.+. +|++++||.+=+
T Consensus       167 ~~v~dtver-~~aDaVI~tG~~---TG~~~---d~~el~~a~~~~-~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~  237 (263)
T COG0434         167 EAVKDTVER-GLADAVIVTGSR---TGSPP---DLEELKLAKEAV-DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKK  237 (263)
T ss_pred             HHHHHHHHc-cCCCEEEEeccc---CCCCC---CHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHHH-cCceEEEEEEcc
Confidence            344443433 468998653222   33333   344566666554 499999999999999999998 999999998754


Q ss_pred             CC---CH--HHHHHHHHHHHHH
Q 033625           94 AP---EP--AHVISLMRKSVED  110 (115)
Q Consensus        94 ~~---d~--~~~~~~l~~~~~~  110 (115)
                      ..   ++  .+.++++-+..++
T Consensus       238 ~G~~~n~VD~~Rv~~~v~~a~~  259 (263)
T COG0434         238 GGVTWNPVDLERVRRFVEAARR  259 (263)
T ss_pred             CCEecCccCHHHHHHHHHHHHH
Confidence            33   22  3555555555444

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=95.89  E-value=0.086  Score=41.37  Aligned_cols=80  Identities=20%  Similarity=0.239  Sum_probs=52.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCC--------CC--------c---ccchhHHHHHHHHHhhCCCCcEEEEcCCC-
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGF--------GG--------Q---KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-   70 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~--------~g--------q---~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-   70 (115)
                      +..+....+. + .++|.|.+-+. .|.        .+        .   .+...+.+.+.++++..+++||.++|||+ 
T Consensus       190 ~s~~~a~~l~-~-~Gvd~I~vsG~-GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~  266 (326)
T cd02811         190 ISRETAKRLA-D-AGVKAIDVAGA-GGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN  266 (326)
T ss_pred             CCHHHHHHHH-H-cCCCEEEECCC-CCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            5566666655 2 58999987432 220        00        1   11222455666766665579999999985 


Q ss_pred             hhhHHHHHHcCCCEEEEcccccC
Q 033625           71 PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        71 ~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      ...+...+..|||.+-+|+++.+
T Consensus       267 ~~dv~kal~lGAd~V~i~~~~L~  289 (326)
T cd02811         267 GLDIAKALALGADLVGMAGPFLK  289 (326)
T ss_pred             HHHHHHHHHhCCCEEEEcHHHHH
Confidence            66777788899999999987543

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=95.88  E-value=0.076  Score=42.33  Aligned_cols=70  Identities=14%  Similarity=0.273  Sum_probs=51.6

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+.++.+++..+.+|+|.|-+.| |     .....++.++++|+.+|+.+|.+=-=.|.+....|.++|||++-+|
T Consensus       110 ~er~~~L~~~~~g~D~iviD~Ah-G-----hs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVG  179 (346)
T PRK05096        110 FEKTKQILALSPALNFICIDVAN-G-----YSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVG  179 (346)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCC-C-----cHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEc
Confidence            46667777322479999876555 3     3345677789999888887755544468999999999999999877

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=95.88  E-value=0.075  Score=42.32  Aligned_cols=69  Identities=16%  Similarity=0.373  Sum_probs=50.1

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCChhhHHHHHHcCCCEEEEc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+.++.++++-+.+|+|.+-+.| |     .....++.|+++|+..|+. ..+.| =.|++....+.++|||.+.+|
T Consensus       109 ~er~~~L~~a~~~~d~iviD~Ah-G-----hs~~~i~~ik~ir~~~p~~-~viaGNV~T~e~a~~Li~aGAD~ikVg  178 (343)
T TIGR01305       109 LEKMTSILEAVPQLKFICLDVAN-G-----YSEHFVEFVKLVREAFPEH-TIMAGNVVTGEMVEELILSGADIVKVG  178 (343)
T ss_pred             HHHHHHHHhcCCCCCEEEEECCC-C-----cHHHHHHHHHHHHhhCCCC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence            46677777443469999876554 3     2345667788888877653 44555 479999999999999999888

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=95.85  E-value=0.33  Score=33.41  Aligned_cols=89  Identities=16%  Similarity=0.063  Sum_probs=54.0

Q ss_pred             CCCCHH-hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625            9 PGTSVE-EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus         9 p~t~~~-~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      ..++.+ .++... + ..+|.|.+-+...++-     +..-+-++++++..+ ++++.+=|.+-.+....+.++|+|.+ 
T Consensus        38 ~~~s~e~~v~aa~-e-~~adii~iSsl~~~~~-----~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~-  109 (132)
T TIGR00640        38 LFQTPEEIARQAV-E-ADVHVVGVSSLAGGHL-----TLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEI-  109 (132)
T ss_pred             CCCCHHHHHHHHH-H-cCCCEEEEcCchhhhH-----HHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEE-
Confidence            344444 445554 2 5899997754443322     222233455555443 56666655577778999999999877 


Q ss_pred             EcccccCCCCHHHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                          +....++.+.+..+.+.+.
T Consensus       110 ----~~~gt~~~~i~~~l~~~~~  128 (132)
T TIGR00640       110 ----FGPGTPIPESAIFLLKKLR  128 (132)
T ss_pred             ----ECCCCCHHHHHHHHHHHHH
Confidence                3334577888887777553

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PRK14565 triosephosphate isomerase; Provisional

Probab=95.84  E-value=0.063  Score=40.69  Aligned_cols=74  Identities=15%  Similarity=0.235  Sum_probs=53.5

Q ss_pred             EEEeeeCCC---CCcccchhHHHHHH-HHHhhCCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcccccCCCCHHHHHHH
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDKVR-SLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~ki~-~l~~~~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ++++-+|-.   +|....++-.+++. .+|+...+++|.-=|+++++|+.++... ++|++-+|++..+.+++..-++.
T Consensus       155 ivIAYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~  233 (237)
T PRK14565        155 FIIAYEPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ  233 (237)
T ss_pred             EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence            455666732   56666655555533 4455555789999999999999998654 89999999998877776655543

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=95.78  E-value=0.087  Score=41.98  Aligned_cols=73  Identities=12%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             CCCCEEEEEeeeCCCCC-cccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGG-QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~g-q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      .++|+|-|-.  +.+.+ ..+.   ..-.+++++.. +.|+.+-|+++++.+..+++.| +|.+.+|+++...+|+.+.+
T Consensus       261 ~giD~i~vs~--~~~~~~~~~~---~~~~~~ik~~~-~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~  334 (362)
T PRK10605        261 RGIAYLHMSE--PDWAGGEPYS---DAFREKVRARF-HGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARL  334 (362)
T ss_pred             cCCCEEEecc--ccccCCcccc---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHH
Confidence            3689997643  32322 2222   12234455544 5789999999999999999988 99999999999888875554


Q ss_pred             H
Q 033625          102 S  102 (115)
Q Consensus       102 ~  102 (115)
                      +
T Consensus       335 ~  335 (362)
T PRK10605        335 Q  335 (362)
T ss_pred             h
Confidence            3

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=95.75  E-value=0.15  Score=33.65  Aligned_cols=77  Identities=12%  Similarity=0.158  Sum_probs=50.8

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +-+.+.+|.+.+...+.+ ...|+|.+-+....    . .+...+-++++++..+ +++|.+-|..-...-..+.+.|+|
T Consensus        31 ~~lg~~~~~~~l~~~~~~-~~pdvV~iS~~~~~----~-~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D  104 (119)
T cd02067          31 IDLGVDVPPEEIVEAAKE-EDADAIGLSGLLTT----H-MTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD  104 (119)
T ss_pred             EECCCCCCHHHHHHHHHH-cCCCEEEEeccccc----c-HHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe
Confidence            345678888877776644 57898876443221    1 2344555677777766 677777776655556678999999


Q ss_pred             EEEE
Q 033625           84 CIVA   87 (115)
Q Consensus        84 ~iv~   87 (115)
                      .++-
T Consensus       105 ~~~~  108 (119)
T cd02067         105 AYFG  108 (119)
T ss_pred             EEEC
Confidence            8754

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=95.74  E-value=0.12  Score=39.29  Aligned_cols=82  Identities=21%  Similarity=0.334  Sum_probs=63.2

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~   87 (115)
                      .+.|+|....|-+  .++|=+.++-+.....|+..   +++-+++..+.. .+|+.+-|||+ .+.++.++.+|||-+.+
T Consensus        29 ~GDpVelA~~Y~e--~GADElvFlDItAs~~gr~~---~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSI  102 (256)
T COG0107          29 AGDPVELAKRYNE--EGADELVFLDITASSEGRET---MLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSI  102 (256)
T ss_pred             cCChHHHHHHHHH--cCCCeEEEEecccccccchh---HHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeee
Confidence            4678888888773  58999998888877777654   444455555543 69999999996 79999999999999999


Q ss_pred             cccccCCCC
Q 033625           88 GSSVFGAPE   96 (115)
Q Consensus        88 Gsaif~~~d   96 (115)
                      .|+=...++
T Consensus       103 NsaAv~~p~  111 (256)
T COG0107         103 NSAAVKDPE  111 (256)
T ss_pred             ChhHhcChH
Confidence            987555454

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=95.71  E-value=0.21  Score=39.81  Aligned_cols=83  Identities=19%  Similarity=0.276  Sum_probs=52.8

Q ss_pred             CCCCEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC------
Q 033625           24 NPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA------   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~------   94 (115)
                      .++|.|.+-. +.|  -|- -.+..++-+.++++.. .++|+.+||||. ...+-..+.+|||.+-+|+.++..      
T Consensus       241 ~G~d~I~vsn-hGG--r~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~  317 (351)
T cd04737         241 AGADGIWVSN-HGG--RQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA  317 (351)
T ss_pred             cCCCEEEEeC-CCC--ccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence            5899987632 222  221 1244556677776543 369999999997 456667778999999999885432      


Q ss_pred             CCHHHHHHHHHHHHH
Q 033625           95 PEPAHVISLMRKSVE  109 (115)
Q Consensus        95 ~d~~~~~~~l~~~~~  109 (115)
                      +...+.++.|++.++
T Consensus       318 ~gv~~~l~~l~~El~  332 (351)
T cd04737         318 QGVASVLEHLNKELK  332 (351)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            223455555555444

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=95.69  E-value=0.038  Score=41.91  Aligned_cols=52  Identities=31%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCC
Q 033625           38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        38 ~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      ..+.+..++   .+++...   ..++.+=|||+ .|..+++.++|||.+|+|..+.++.
T Consensus       175 ga~~Pv~~e---~v~~v~~---~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~  227 (240)
T COG1646         175 GAGDPVPVE---MVSRVLS---DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP  227 (240)
T ss_pred             CCCCCcCHH---HHHHhhc---cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence            344444444   4444432   34899999996 6788899999999999999997654

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=95.69  E-value=0.033  Score=41.25  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=43.1

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHH-cCCCEE
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAAS-AGANCI   85 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~-~Gad~i   85 (115)
                      +.+.++.+++  -++|.||      ..+|..-..+.++.|+++.+.. ..+.|.+-|||+.+|++.+.+ +|+.-|
T Consensus       129 ~~~al~~L~~--lG~~rVL------TSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~~~~  196 (201)
T PF03932_consen  129 PEEALEQLIE--LGFDRVL------TSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGVREI  196 (201)
T ss_dssp             HHHHHHHHHH--HT-SEEE------ESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred             HHHHHHHHHh--cCCCEEE------CCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence            4566676662  2788887      2233334456677788776543 468899999999999999977 898765

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=95.68  E-value=0.21  Score=39.65  Aligned_cols=84  Identities=19%  Similarity=0.288  Sum_probs=51.9

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCcEEEEcCCC-hhhHHHHHHc
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLG-PSTIAEAASA   80 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~i~~dGGI~-~~ni~~l~~~   80 (115)
                      .++--+..+..+... + .++|.|.+-.  -|-...+....+.+-+.++++    ...++||.+||||. ...+-..+..
T Consensus       217 ivKgv~~~~dA~~a~-~-~G~d~I~vsn--hgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaL  292 (344)
T cd02922         217 VLKGVQTVEDAVLAA-E-YGVDGIVLSN--HGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCL  292 (344)
T ss_pred             EEEcCCCHHHHHHHH-H-cCCCEEEEEC--CCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHc
Confidence            333334455555555 1 5899998753  331111222233333444443    22469999999997 5677788899


Q ss_pred             CCCEEEEcccccC
Q 033625           81 GANCIVAGSSVFG   93 (115)
Q Consensus        81 Gad~iv~Gsaif~   93 (115)
                      |||.+-+|+.++.
T Consensus       293 GA~aV~iG~~~l~  305 (344)
T cd02922         293 GAKAVGLGRPFLY  305 (344)
T ss_pred             CCCEEEECHHHHH
Confidence            9999999988654

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PLN02979 glycolate oxidase

Probab=95.63  E-value=0.24  Score=39.82  Aligned_cols=93  Identities=17%  Similarity=0.313  Sum_probs=58.3

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa   90 (115)
                      .+..+...+  .++|.|.|-.  -|....+..+.+++-+.++++. ..++++.+||||+. ..+-..+..|||.+-+|+.
T Consensus       234 ~~dA~~a~~--~Gvd~I~Vsn--hGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp  309 (366)
T PLN02979        234 GEDARIAIQ--AGAAGIIVSN--HGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP  309 (366)
T ss_pred             HHHHHHHHh--cCCCEEEECC--CCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHH
Confidence            444444441  5899997532  2323334455667777777654 35799999999974 4466667899999999987


Q ss_pred             cc-C-----CCCHHHHHHHHHHHHH
Q 033625           91 VF-G-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        91 if-~-----~~d~~~~~~~l~~~~~  109 (115)
                      +. .     .+...+.++.|++.++
T Consensus       310 ~L~~la~~G~~Gv~~~l~~l~~El~  334 (366)
T PLN02979        310 VVFSLAAEGEAGVRKVLQMLRDEFE  334 (366)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            43 2     2233455555555443

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=95.62  E-value=0.23  Score=39.93  Aligned_cols=93  Identities=17%  Similarity=0.286  Sum_probs=56.4

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      .+..+...+  .++|.|.| +.|.|- ...-.+..++-|.++++.. .++||.+||||. ...+...+..|||.+-+|..
T Consensus       239 ~eda~~a~~--~Gvd~I~V-S~HGGr-q~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~  314 (367)
T TIGR02708       239 PEDADRALK--AGASGIWV-TNHGGR-QLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRP  314 (367)
T ss_pred             HHHHHHHHH--cCcCEEEE-CCcCcc-CCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHH
Confidence            344444441  58998864 455551 1112344456667776543 469999999997 44555666799999999977


Q ss_pred             -ccC-----CCCHHHHHHHHHHHHH
Q 033625           91 -VFG-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        91 -if~-----~~d~~~~~~~l~~~~~  109 (115)
                       +|.     .+.....++.|++.++
T Consensus       315 ~l~~la~~G~~gv~~~l~~l~~El~  339 (367)
T TIGR02708       315 VIYGLALGGSQGARQVFEYLNKELK  339 (367)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             342     2233455555555544

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=95.59  E-value=0.093  Score=39.63  Aligned_cols=84  Identities=20%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHH-------hh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR-------NR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~-------~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .++|+|+   .+-|.+.+++.+..+..|++..       ..  .-++|+...-|++.=+.+.-..+||.++=+||+|-+-
T Consensus       144 ~GaDiIQ---TEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~L  220 (242)
T PF04481_consen  144 AGADIIQ---TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRL  220 (242)
T ss_pred             hCCcEEE---cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCcccchhHHhhhc
Confidence            5899998   6777777777666666555442       11  2479999999999999999999999999999999988


Q ss_pred             CCHHHHHHHHHHHHHH
Q 033625           95 PEPAHVISLMRKSVED  110 (115)
Q Consensus        95 ~d~~~~~~~l~~~~~~  110 (115)
                      .|..+++..+|++.+.
T Consensus       221 n~~~aMva~vr~l~~a  236 (242)
T PF04481_consen  221 NDEVAMVAAVRSLVEA  236 (242)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            8887777777765543

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=95.58  E-value=0.12  Score=39.41  Aligned_cols=75  Identities=9%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      .+.+.|+|=.-+.  ..-......   -.++....| +..+.+-+||+ ++.+..+... +|.+.+|+++.+++||.+.+
T Consensus       170 ~ga~iiGINnRdL--~t~~vd~~~---~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~  243 (247)
T PRK13957        170 CGAEIIGINTRDL--DTFQIHQNL---VEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAW  243 (247)
T ss_pred             CCCCEEEEeCCCC--ccceECHHH---HHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHH
Confidence            4777776433322  222223333   344444444 45567778986 5888888887 99999999999999999888


Q ss_pred             HHH
Q 033625          102 SLM  104 (115)
Q Consensus       102 ~~l  104 (115)
                      ++|
T Consensus       244 ~~l  246 (247)
T PRK13957        244 LSL  246 (247)
T ss_pred             HHh
Confidence            765

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=95.56  E-value=0.11  Score=40.94  Aligned_cols=80  Identities=20%  Similarity=0.372  Sum_probs=60.7

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSS   90 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsa   90 (115)
                      ..+...+++ .++|.+.   ||.-...|... +.-++.|.++++..+++|+.+=|+| +.+...++++ .|+|.+-+|++
T Consensus       155 ~~ia~~~~~-~g~~~lt---VHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRg  230 (323)
T COG0042         155 LEIARILED-AGADALT---VHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRG  230 (323)
T ss_pred             HHHHHHHHh-cCCCEEE---EecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHH
Confidence            345566655 6788885   67765555442 3567889999988777999999998 8888888766 67999999998


Q ss_pred             ccCCCCH
Q 033625           91 VFGAPEP   97 (115)
Q Consensus        91 if~~~d~   97 (115)
                      .++.+..
T Consensus       231 a~~nP~l  237 (323)
T COG0042         231 ALGNPWL  237 (323)
T ss_pred             HccCCcH
Confidence            8876654

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.45  E-value=0.094  Score=38.32  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh-hHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-TIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~-ni~~l~~~Gad~iv~   87 (115)
                      +.+|++..+.+.+  .++|++-+.. .+++.+..+     +-++.+++.. ++||.+-|++... .+..+.++|||.+++
T Consensus        30 ~~~~~~~A~~~~~--~GA~~l~v~~-~~~~~~g~~-----~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l  100 (217)
T cd00331          30 DFDPVEIAKAYEK--AGAAAISVLT-EPKYFQGSL-----EDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLL  100 (217)
T ss_pred             CCCHHHHHHHHHH--cCCCEEEEEe-CccccCCCH-----HHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence            4456676677662  4789985543 344433332     3455555543 7888876666555 799999999999999


Q ss_pred             cccccC
Q 033625           88 GSSVFG   93 (115)
Q Consensus        88 Gsaif~   93 (115)
                      +...+.
T Consensus       101 ~~~~~~  106 (217)
T cd00331         101 IVAALD  106 (217)
T ss_pred             eeccCC
Confidence            977654

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=95.40  E-value=0.15  Score=41.10  Aligned_cols=95  Identities=14%  Similarity=0.208  Sum_probs=58.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGP-STIAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G   88 (115)
                      +..+..+..++  .++|.|.|.. +.|- ..+-.+.+.+-+.++++.. .++||.+||||.- ..+-..+..|||.+.+|
T Consensus       254 ~s~~dA~~a~~--~Gvd~I~Vs~-hGGr-~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iG  329 (381)
T PRK11197        254 LDPEDARDAVR--FGADGIVVSN-HGGR-QLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLG  329 (381)
T ss_pred             CCHHHHHHHHh--CCCCEEEECC-CCCC-CCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEh
Confidence            44455555551  5899998642 2221 1111344556666665543 4799999999974 45667779999999999


Q ss_pred             cccc-C-----CCCHHHHHHHHHHHHH
Q 033625           89 SSVF-G-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        89 saif-~-----~~d~~~~~~~l~~~~~  109 (115)
                      +.+. .     .+...+.++.|++.++
T Consensus       330 r~~l~~la~~G~~gv~~~l~~l~~El~  356 (381)
T PRK11197        330 RAFVYALAAAGQAGVANLLDLIEKEMR  356 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            8743 2     2234455555555544

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=95.39  E-value=0.13  Score=41.29  Aligned_cols=51  Identities=22%  Similarity=0.432  Sum_probs=40.5

Q ss_pred             HHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           50 KVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        50 ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..+++++.. ++|+.+-||| +++.+.++++.| +|.+.+|+++...+|+-+.+
T Consensus       296 ~~~~ik~~~-~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~  348 (382)
T cd02931         296 YCKALKEVV-DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKI  348 (382)
T ss_pred             HHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHH
Confidence            345566553 7899999999 788899988866 99999999999888874443

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=95.38  E-value=0.14  Score=40.79  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=53.3

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHH--hhC--CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR--NRY--PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAH   99 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~--~~~--~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~   99 (115)
                      +++.|+|=.-+.  ..-........+|....  +..  .++.++.-+||+ .+.+..+.++|+|.|.+|.++.+++||.+
T Consensus       251 ga~iIGINNRdL--~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~  328 (338)
T PLN02460        251 GVELIGINNRSL--ETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGK  328 (338)
T ss_pred             CCCEEEEeCCCC--CcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHH
Confidence            677776533333  22233344444443311  022  245567778885 69999999999999999999999999999


Q ss_pred             HHHHHH
Q 033625          100 VISLMR  105 (115)
Q Consensus       100 ~~~~l~  105 (115)
                      .+++|.
T Consensus       329 ~l~~L~  334 (338)
T PLN02460        329 GIAGLF  334 (338)
T ss_pred             HHHHHh
Confidence            988875

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.37  E-value=0.087  Score=43.62  Aligned_cols=80  Identities=24%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeC-------CCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHH
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEP-------GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEA   77 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~p-------G~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l   77 (115)
                      |..|..+...-+-   .++|.|-| ++-|       +++|...  ..+.-+.++++.  ..++|+.+||||+ +..+...
T Consensus       275 nv~t~~~a~~l~~---aGad~v~v-gig~gsictt~~~~~~~~--p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~a  348 (479)
T PRK07807        275 NVVTAEGTRDLVE---AGADIVKV-GVGPGAMCTTRMMTGVGR--PQFSAVLECAAAARELGAHVWADGGVRHPRDVALA  348 (479)
T ss_pred             ccCCHHHHHHHHH---cCCCEEEE-CccCCcccccccccCCch--hHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence            5666666655554   68999864 2334       3444322  244445555442  2379999999996 6788888


Q ss_pred             HHcCCCEEEEcccccC
Q 033625           78 ASAGANCIVAGSSVFG   93 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~   93 (115)
                      +.+|||.+++|+.+-.
T Consensus       349 l~~ga~~v~~g~~~ag  364 (479)
T PRK07807        349 LAAGASNVMIGSWFAG  364 (479)
T ss_pred             HHcCCCeeeccHhhcc
Confidence            8999999999998754

>TIGR02814 pfaD_fam PfaD family protein

Probab=95.36  E-value=0.11  Score=42.66  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=30.0

Q ss_pred             CCcEEEEcCC-ChhhHHHHHHcCCCEEEEccccc
Q 033625           60 SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        60 ~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .+||.+.||| |.+.+......|||.+.+||...
T Consensus       224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl  257 (444)
T TIGR02814       224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ  257 (444)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence            5889999999 89999999999999999999743

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.34  E-value=0.057  Score=44.94  Aligned_cols=77  Identities=21%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCC--CCc--c-cchhHHHHHHHHHh--------hCCCCcEEEEcCCCh-hhHHHHHH
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGF--GGQ--K-FMPEMMDKVRSLRN--------RYPSLDIEVDGGLGP-STIAEAAS   79 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~--~gq--~-~~~~~~~ki~~l~~--------~~~~~~i~~dGGI~~-~ni~~l~~   79 (115)
                      +..+.++.  .++|+|.| +++||.  +.+  . .-...+.-+.++++        ...++|+.+||||+. ..+-..+.
T Consensus       296 e~a~~li~--aGAd~I~v-g~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla  372 (502)
T PRK07107        296 EGFRYLAE--AGADFVKV-GIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA  372 (502)
T ss_pred             HHHHHHHH--cCCCEEEE-CCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH
Confidence            35555551  58999987 888981  111  1 11122223332222        123489999999974 45566678


Q ss_pred             cCCCEEEEcccccC
Q 033625           80 AGANCIVAGSSVFG   93 (115)
Q Consensus        80 ~Gad~iv~Gsaif~   93 (115)
                      +|||.+-+||.+-.
T Consensus       373 ~GA~~vm~G~~~ag  386 (502)
T PRK07107        373 MGADFIMLGRYFAR  386 (502)
T ss_pred             cCCCeeeeChhhhc
Confidence            99999999987644

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=95.33  E-value=0.22  Score=39.18  Aligned_cols=67  Identities=19%  Similarity=0.426  Sum_probs=46.9

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +.++.+++  .++|+|.+-.   .++..   +...+.++++++..|++++.+-.-.+.+....+.++|||++++|
T Consensus        97 ~~~~~l~e--agv~~I~vd~---~~G~~---~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg  163 (325)
T cd00381          97 ERAEALVE--AGVDVIVIDS---AHGHS---VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG  163 (325)
T ss_pred             HHHHHHHh--cCCCEEEEEC---CCCCc---HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence            55566663  4788876432   22211   35566788888877778887755567899999999999999984

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=95.31  E-value=0.044  Score=42.92  Aligned_cols=52  Identities=13%  Similarity=0.213  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 033625           48 MDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~  100 (115)
                      ++..+++++.. ++||.+.||| +++.+.++++.| +|++.+|++++..+++.+.
T Consensus       279 ~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k  332 (336)
T cd02932         279 VPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH  332 (336)
T ss_pred             HHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence            34556666654 7999999999 899999999988 9999999999988887543

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=95.31  E-value=0.14  Score=39.16  Aligned_cols=73  Identities=16%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc--CCCEEEEccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA--GANCIVAGSS   90 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~--Gad~iv~Gsa   90 (115)
                      +.++.+.   ..+..+++=.+.-.-..+-+..+.   ++++++. .++|+.+.||++ .+.+..+.+.  |...+|+|.+
T Consensus       162 e~~~~~~---~~~~~il~TdI~rDGtl~G~dlel---~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~A  234 (253)
T TIGR02129       162 ETLEELS---KYCDEFLIHAADVEGLCKGIDEEL---VSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSA  234 (253)
T ss_pred             HHHHHHH---hhCCEEEEeeecccCccccCCHHH---HHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeeh
Confidence            4445544   347888877776654555555444   4555554 589999999995 6888887554  5666899999


Q ss_pred             ccC
Q 033625           91 VFG   93 (115)
Q Consensus        91 if~   93 (115)
                      ||.
T Consensus       235 lf~  237 (253)
T TIGR02129       235 LDI  237 (253)
T ss_pred             HHH
Confidence            885

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=95.29  E-value=0.2  Score=40.33  Aligned_cols=88  Identities=19%  Similarity=0.322  Sum_probs=53.1

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc---------hhHHHHHHHH-Hhh--CCCCcEEEEcCC
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDKVRSL-RNR--YPSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~---------~~~~~ki~~l-~~~--~~~~~i~~dGGI   69 (115)
                      .+|+=+.....++.+...... ..+|+|.|-.-.-|.+..+..         ...+.+..+. ++.  +..+.+.++||+
T Consensus       205 pVgvKl~~~~~~~~~~~~~~~-ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl  283 (368)
T PF01645_consen  205 PVGVKLVAGRGVEDIAAGAAK-AGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGL  283 (368)
T ss_dssp             EEEEEEE-STTHHHHHHHHHH-TT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS-
T ss_pred             cEEEEECCCCcHHHHHHhhhh-ccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCc
Confidence            467778888888888775544 689999988777665544321         2222222222 222  346899999998


Q ss_pred             C-hhhHHHHHHcCCCEEEEccc
Q 033625           70 G-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        70 ~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      . ...+-..+..|||.+.+|++
T Consensus       284 ~t~~dv~kalaLGAD~v~igt~  305 (368)
T PF01645_consen  284 RTGDDVAKALALGADAVYIGTA  305 (368)
T ss_dssp             -SHHHHHHHHHCT-SEEE-SHH
T ss_pred             cCHHHHHHHHhcCCCeeEecch
Confidence            4 67888888999999999965

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=95.29  E-value=0.11  Score=42.33  Aligned_cols=67  Identities=22%  Similarity=0.385  Sum_probs=45.6

Q ss_pred             CCCEEEEEeeeCC-CCCcccchhHHHHHHHHHhhC-------CCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccccc
Q 033625           25 PVEMVLVMTVEPG-FGGQKFMPEMMDKVRSLRNRY-------PSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        25 ~vD~vlvm~v~pG-~~gq~~~~~~~~ki~~l~~~~-------~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .+|.|.+- .+.| -.|+.-....+..+.++++..       ..+||.+.||| |.+.+......|||.+.+||...
T Consensus       177 ~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl  252 (418)
T cd04742         177 VADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ  252 (418)
T ss_pred             CCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence            37888765 4443 223322233444455544321       25899999999 89999999999999999999743

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]

Probab=95.26  E-value=0.071  Score=40.23  Aligned_cols=84  Identities=25%  Similarity=0.366  Sum_probs=54.4

Q ss_pred             CCHHhHHHhH---hCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625           11 TSVEEVYPLV---EGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus        11 t~~~~~~~~~---~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      ++.+.+..++   .+.+.+-..++|++.|=.....-....+.+++++++.    +++ .-...=|.| +.++..++.|+.
T Consensus       137 ~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~-~~~LSMGMS-~D~e~AI~~GaT  214 (228)
T COG0325         137 VPPEELDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPP-IDELSMGMS-NDYEIAIAEGAT  214 (228)
T ss_pred             CCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CCeecCcCc-ccHHHHHHcCCC
Confidence            4444444443   2347899999999998544444445566666665442    221 123444654 456777799999


Q ss_pred             EEEEcccccCCCC
Q 033625           84 CIVAGSSVFGAPE   96 (115)
Q Consensus        84 ~iv~Gsaif~~~d   96 (115)
                      .+=+||+||++.+
T Consensus       215 ~VRIGtaiFg~r~  227 (228)
T COG0325         215 MVRIGTAIFGARD  227 (228)
T ss_pred             EEEEcHHhhCCCC
Confidence            9999999998764

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=95.25  E-value=0.22  Score=39.81  Aligned_cols=75  Identities=16%  Similarity=0.246  Sum_probs=49.9

Q ss_pred             HhCCCCCCEEEEEee---eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-------------------ChhhHHHH
Q 033625           20 VEGANPVEMVLVMTV---EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-------------------GPSTIAEA   77 (115)
Q Consensus        20 ~~~~~~vD~vlvm~v---~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-------------------~~~ni~~l   77 (115)
                      +++ .++|+|-+-+-   .|.|.+.     ...-.+++++. .++|+.+.|||                   +++.+..+
T Consensus       244 l~~-~gvd~i~vs~g~~~~~~~~~~-----~~~~~~~~k~~-~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~  316 (361)
T cd04747         244 LVD-AGVDIFHCSTRRFWEPEFEGS-----ELNLAGWTKKL-TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLER  316 (361)
T ss_pred             HHH-cCCCEEEecCCCccCCCcCcc-----chhHHHHHHHH-cCCCEEEECCcccccccccccccccccccCCHHHHHHH
Confidence            433 46899765331   2222221     12223444544 36899999998                   78889998


Q ss_pred             HHcC-CCEEEEcccccCCCCHHHHH
Q 033625           78 ASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        78 ~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      ++.| +|.+.+|+++...+++.+.+
T Consensus       317 l~~g~~D~V~~gR~~iadP~~~~k~  341 (361)
T cd04747         317 LERGEFDLVAVGRALLSDPAWVAKV  341 (361)
T ss_pred             HHCCCCCeehhhHHHHhCcHHHHHH
Confidence            8865 99999999999888765443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK08185 hypothetical protein; Provisional

Probab=95.24  E-value=0.31  Score=37.85  Aligned_cols=82  Identities=22%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC--ChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI--~~~ni~~l~~~Gad~i   85 (115)
                      -|..+..+++.+. -++|++-+  .++++-|.+..-..-.+++|+++++.. ++|++.-||+  ..+.++...+.|+.-+
T Consensus       148 ~t~peea~~f~~~-TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~Ki  225 (283)
T PRK08185        148 YTDPEQAEDFVSR-TGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKI  225 (283)
T ss_pred             CCCHHHHHHHHHh-hCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence            4667777777732 37999876  333554543111112377888887764 7999999985  5788999999999999


Q ss_pred             EEcccccC
Q 033625           86 VAGSSVFG   93 (115)
Q Consensus        86 v~Gsaif~   93 (115)
                      =+++.+..
T Consensus       226 Ni~T~l~~  233 (283)
T PRK08185        226 NISSDMKY  233 (283)
T ss_pred             EeChHHHH
Confidence            99988753

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=95.18  E-value=0.15  Score=40.18  Aligned_cols=52  Identities=15%  Similarity=0.228  Sum_probs=40.9

Q ss_pred             HHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      +-++++++.. ++|+.+-|+| +++.+..+++.| +|.+.+|..+...+++-+.+
T Consensus       275 ~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~  328 (343)
T cd04734         275 PLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKA  328 (343)
T ss_pred             HHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHH
Confidence            4455666554 7899999998 779999888765 99999999999888875443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=95.11  E-value=0.15  Score=37.92  Aligned_cols=79  Identities=13%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH--cCCCEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS--AGANCI   85 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~--~Gad~i   85 (115)
                      ...|++..+.|.+  .++|.+-+.=.+-- .|..   ..++.|+++++.   .|++++|||+ .+.+..+..  .|||-+
T Consensus        35 ~~dP~~~a~~~~~--~g~~~l~ivDLd~~-~~~~---~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rv  105 (221)
T TIGR00734        35 SSSPDDAAKVIEE--IGARFIYIADLDRI-VGLG---DNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRV  105 (221)
T ss_pred             CCCHHHHHHHHHH--cCCCEEEEEEcccc-cCCc---chHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEE
Confidence            3577888887762  47899887665542 2333   334556666654   4899999997 455666643  369999


Q ss_pred             EEcccccCCCC
Q 033625           86 VAGSSVFGAPE   96 (115)
Q Consensus        86 v~Gsaif~~~d   96 (115)
                      |+||.-++.++
T Consensus       106 vigT~a~~~p~  116 (221)
T TIGR00734       106 VVATETLDITE  116 (221)
T ss_pred             eecChhhCCHH
Confidence            99999887554

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=95.10  E-value=0.13  Score=41.07  Aligned_cols=78  Identities=23%  Similarity=0.328  Sum_probs=50.9

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhh-HHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPST-IAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~n-i~~l~~~Gad~iv~G   88 (115)
                      ...++.....+  .++|+|.|  .+-|-+.-++.+.+++-|.++++.. .+++|.+||||.-.. +-..+..|||.+-+|
T Consensus       234 ~~~~da~~~~~--~G~~~i~v--s~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~ig  309 (356)
T PF01070_consen  234 LSPEDAKRAVD--AGVDGIDV--SNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIG  309 (356)
T ss_dssp             -SHHHHHHHHH--TT-SEEEE--ESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEES
T ss_pred             ccHHHHHHHHh--cCCCEEEe--cCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEc
Confidence            34445555441  58999875  2334344566677888888888743 479999999997544 777889999999999


Q ss_pred             cccc
Q 033625           89 SSVF   92 (115)
Q Consensus        89 saif   92 (115)
                      ..+.
T Consensus       310 r~~l  313 (356)
T PF01070_consen  310 RPFL  313 (356)
T ss_dssp             HHHH
T ss_pred             cHHH
Confidence            7754

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=95.03  E-value=0.14  Score=40.98  Aligned_cols=73  Identities=15%  Similarity=0.312  Sum_probs=54.4

Q ss_pred             hHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH-cCCCEEEEccccc
Q 033625           19 LVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS-AGANCIVAGSSVF   92 (115)
Q Consensus        19 ~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~-~Gad~iv~Gsaif   92 (115)
                      .+++ .+++.+.|=+-.+-..|....+.-++.|+.+++..+++|+.+-|+|. .+.+..+.+ .|+|++-++.++.
T Consensus       163 ~~e~-aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL  237 (358)
T KOG2335|consen  163 MLED-AGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLL  237 (358)
T ss_pred             HHHh-CCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhh
Confidence            3444 67888765444444455557788899999999988889999999997 555665555 9999999996543

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=94.90  E-value=0.24  Score=39.10  Aligned_cols=78  Identities=23%  Similarity=0.233  Sum_probs=50.0

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCC-------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFG-------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN   83 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~-------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad   83 (115)
                      ..+..+.+++  .++|.|. .++.||..       |..+..-.+.-|.++++.. ++||.+||||+ ...+...+.+|||
T Consensus       147 t~e~a~~l~~--aGad~I~-V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd  222 (321)
T TIGR01306       147 TPEAVRELEN--AGADATK-VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGAS  222 (321)
T ss_pred             CHHHHHHHHH--cCcCEEE-ECCCCCccccceeeeccCCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCC
Confidence            3444445441  5889986 34556642       1222112344566666554 69999999996 4567777789999


Q ss_pred             EEEEcccccC
Q 033625           84 CIVAGSSVFG   93 (115)
Q Consensus        84 ~iv~Gsaif~   93 (115)
                      .+-+|+.+-+
T Consensus       223 ~Vmig~~~ag  232 (321)
T TIGR01306       223 MVMIGSLFAG  232 (321)
T ss_pred             EEeechhhcC
Confidence            9999976644

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=94.87  E-value=0.32  Score=38.15  Aligned_cols=70  Identities=20%  Similarity=0.396  Sum_probs=50.2

Q ss_pred             CCCCEEEEEeeeCCCC------Ccc---cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFG------GQK---FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~------gq~---~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .++|.|   ++|+++.      |..   ..+..++.+.++++..+++|+..-|||. .+.+.++.+ |+|.+-+|++.+.
T Consensus       153 ~G~~~i---tvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~  228 (318)
T TIGR00742       153 KGCQNF---IVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE  228 (318)
T ss_pred             cCCCEE---EEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence            578987   4676643      321   1223466788888877789999999995 667777765 9999999999877


Q ss_pred             CCCH
Q 033625           94 APEP   97 (115)
Q Consensus        94 ~~d~   97 (115)
                      .+.+
T Consensus       229 nP~i  232 (318)
T TIGR00742       229 NPYL  232 (318)
T ss_pred             CCHH
Confidence            5543

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.82  E-value=0.2  Score=41.14  Aligned_cols=79  Identities=20%  Similarity=0.309  Sum_probs=58.3

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA   82 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga   82 (115)
                      +|-|++....-..-..++.. +++|+|.+-+.+ |     -....++-|+.+++.+|++++.+--.+|.+-...|+.+||
T Consensus       242 ~gAaiGTre~dK~rl~ll~~-aGvdvviLDSSq-G-----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGa  314 (503)
T KOG2550|consen  242 CGAAIGTRDDDKERLDLLVQ-AGVDVVILDSSQ-G-----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGA  314 (503)
T ss_pred             eeeccccccchhHHHHHhhh-cCCcEEEEecCC-C-----cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccC
Confidence            45666655555444445544 789999865432 2     2335567789999999999888888899999999999999


Q ss_pred             CEEEEc
Q 033625           83 NCIVAG   88 (115)
Q Consensus        83 d~iv~G   88 (115)
                      |++=+|
T Consensus       315 DgLrVG  320 (503)
T KOG2550|consen  315 DGLRVG  320 (503)
T ss_pred             ceeEec
Confidence            999887

>PLN02411 12-oxophytodienoate reductase

Probab=94.81  E-value=0.077  Score=42.73  Aligned_cols=51  Identities=24%  Similarity=0.349  Sum_probs=42.6

Q ss_pred             HHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHH
Q 033625           52 RSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        52 ~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      +++++.. +.|+.+.||++.+...++++.| +|.+.+|+++...+|+.+.+++
T Consensus       306 ~~ik~~v-~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~  357 (391)
T PLN02411        306 RTLRRAY-QGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL  357 (391)
T ss_pred             HHHHHHc-CCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence            5555554 6899999999999999999988 9999999999999988665543

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=94.75  E-value=0.59  Score=37.61  Aligned_cols=93  Identities=17%  Similarity=0.318  Sum_probs=56.6

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGP-STIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsa   90 (115)
                      .+..+...+  .++|.|.|-. + |-...+..+.+++-|.++++. ..++++.+||||.. ..+-..+..|||.+-+|+.
T Consensus       235 ~~dA~~a~~--~Gvd~I~Vsn-h-GGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~  310 (367)
T PLN02493        235 GEDARIAIQ--AGAAGIIVSN-H-GARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP  310 (367)
T ss_pred             HHHHHHHHH--cCCCEEEECC-C-CCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHH
Confidence            444444441  5899996532 2 222223445567777777654 34699999999974 3455666889999999977


Q ss_pred             cc-C-----CCCHHHHHHHHHHHHH
Q 033625           91 VF-G-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        91 if-~-----~~d~~~~~~~l~~~~~  109 (115)
                      +. .     .+...+.++.|++.++
T Consensus       311 ~l~~l~~~G~~gv~~~l~~l~~el~  335 (367)
T PLN02493        311 VVFSLAAEGEAGVRKVLQMLRDEFE  335 (367)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            43 2     1233444444554443

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=94.66  E-value=0.11  Score=41.12  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=51.8

Q ss_pred             CCCCEEEEEeeeCCC-CCc-ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGF-GGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~-~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      -++|.|.....+.|- .|. .....++..+.++++.+..+|+.+.|||- .+-+.-....|||.+-+||....
T Consensus       146 ~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~  218 (336)
T COG2070         146 AGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  218 (336)
T ss_pred             CCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence            588988766554432 222 22556778899999887449999999995 56677778999999999998543

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.62  E-value=0.21  Score=41.67  Aligned_cols=78  Identities=19%  Similarity=0.307  Sum_probs=53.7

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-C-CChhhHHHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-G-LGPSTIAEAAS   79 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-G-I~~~ni~~l~~   79 (115)
                      ++|-++++..-.+..+.+++  .++|+|.|- ..+|.+     ...++.|+++++..+. ++.+.+ . .+.+....+.+
T Consensus       233 ~V~~av~~~~~~~ra~~Lv~--aGvd~i~vd-~a~g~~-----~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~  303 (502)
T PRK07107        233 VVGAGINTRDYAERVPALVE--AGADVLCID-SSEGYS-----EWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAE  303 (502)
T ss_pred             eeeeccChhhHHHHHHHHHH--hCCCeEeec-Cccccc-----HHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHH
Confidence            35667777644677777773  489999865 555533     2346778888887652 244444 3 46788999999


Q ss_pred             cCCCEEEEc
Q 033625           80 AGANCIVAG   88 (115)
Q Consensus        80 ~Gad~iv~G   88 (115)
                      +|||++.+|
T Consensus       304 aGAd~I~vg  312 (502)
T PRK07107        304 AGADFVKVG  312 (502)
T ss_pred             cCCCEEEEC
Confidence            999999884

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=94.56  E-value=0.16  Score=40.07  Aligned_cols=50  Identities=10%  Similarity=0.226  Sum_probs=40.5

Q ss_pred             HHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHH
Q 033625           50 KVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        50 ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~  100 (115)
                      ..+++++.. ++||.+.|++ +++.+.++++.| +|++.+|.+++..+++-+.
T Consensus       267 ~~~~ik~~v-~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k  318 (353)
T cd02930         267 ATAKLKRAV-DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAK  318 (353)
T ss_pred             HHHHHHHhC-CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHH
Confidence            345666653 7999999998 788899988876 9999999999988887443

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=94.56  E-value=0.27  Score=39.19  Aligned_cols=52  Identities=17%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             HHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      +..+++++. .++|+.+-||+ +++.+.++++.| +|.+.+|.++...+++-+.+
T Consensus       279 ~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~  332 (370)
T cd02929         279 PYIKFVKQV-TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKI  332 (370)
T ss_pred             HHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHH
Confidence            334555554 37899999999 588899988877 99999999999888875444

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=94.46  E-value=0.16  Score=38.93  Aligned_cols=48  Identities=19%  Similarity=0.293  Sum_probs=42.7

Q ss_pred             CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           59 PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        59 ~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      ++++|.-=|||+++|..++ .+.++|++-+|++.++++|+...++.+.+
T Consensus       201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~  249 (251)
T COG0149         201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK  249 (251)
T ss_pred             CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence            5799999999999999985 78999999999999999999888777654

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=94.36  E-value=0.46  Score=31.01  Aligned_cols=76  Identities=21%  Similarity=0.323  Sum_probs=44.0

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH--cCCC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS--AGAN   83 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~--~Gad   83 (115)
                      +++..+.+.+.+.+.+ ...|.|.+-+...   .  ..+...+-++.+++..|+.++. .||.. ..+-.++.+  .|+|
T Consensus        34 ~d~~~~~~~l~~~~~~-~~pd~V~iS~~~~---~--~~~~~~~l~~~~k~~~p~~~iv-~GG~~~t~~~~~~l~~~~~~D  106 (121)
T PF02310_consen   34 LDANVPPEELVEALRA-ERPDVVGISVSMT---P--NLPEAKRLARAIKERNPNIPIV-VGGPHATADPEEILREYPGID  106 (121)
T ss_dssp             EESSB-HHHHHHHHHH-TTCSEEEEEESSS---T--HHHHHHHHHHHHHTTCTTSEEE-EEESSSGHHHHHHHHHHHTSE
T ss_pred             ECCCCCHHHHHHHHhc-CCCcEEEEEccCc---C--cHHHHHHHHHHHHhcCCCCEEE-EECCchhcChHHHhccCcCcc
Confidence            4455566777776644 5889987643211   1  1233445556666666666555 45544 333344444  7999


Q ss_pred             EEEEcc
Q 033625           84 CIVAGS   89 (115)
Q Consensus        84 ~iv~Gs   89 (115)
                      .++.|-
T Consensus       107 ~vv~Ge  112 (121)
T PF02310_consen  107 YVVRGE  112 (121)
T ss_dssp             EEEEET
T ss_pred             eecCCC
Confidence            999984

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>cd00945 Aldolase_Class_I Class I aldolases

Probab=94.35  E-value=0.097  Score=36.75  Aligned_cols=41  Identities=20%  Similarity=0.356  Sum_probs=31.8

Q ss_pred             HHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           48 MDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        48 ~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      ++.++++++..+ ++++.+.||++ ++++.+....|++.+++|
T Consensus       159 ~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         159 VEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             HHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence            455666665543 67899999998 788888889999998765

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK14567 triosephosphate isomerase; Provisional

Probab=94.31  E-value=0.22  Score=38.16  Aligned_cols=74  Identities=19%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             EEEeeeCCC---CCcccchhHHHHHH-HHHhh--------CCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCC
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDKVR-SLRNR--------YPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPE   96 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~ki~-~l~~~--------~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d   96 (115)
                      ++++-+|-.   +|+...++..+++. .+|+.        .++++|.-=|+++++|+.++...+ +|++-+|++..+.++
T Consensus       160 ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~~~~  239 (253)
T PRK14567        160 VVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAE  239 (253)
T ss_pred             EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhcHHH
Confidence            455667732   45555444444433 23331        246899999999999999998887 999999999887766


Q ss_pred             HHHHHHH
Q 033625           97 PAHVISL  103 (115)
Q Consensus        97 ~~~~~~~  103 (115)
                      +.+-++.
T Consensus       240 F~~Ii~~  246 (253)
T PRK14567        240 FNEIINQ  246 (253)
T ss_pred             HHHHHHH
Confidence            6655544

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=94.02  E-value=1.3  Score=31.19  Aligned_cols=88  Identities=24%  Similarity=0.350  Sum_probs=58.1

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .||.|.+...++  ..+|.|.+-+..-++  ....+..   ++.+|+... ++.+.+=|-|.+++++.+.+.|+|.+   
T Consensus        50 ~tp~e~v~aA~~--~dv~vIgvSsl~g~h--~~l~~~l---ve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~i---  119 (143)
T COG2185          50 QTPEEAVRAAVE--EDVDVIGVSSLDGGH--LTLVPGL---VEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRI---  119 (143)
T ss_pred             CCHHHHHHHHHh--cCCCEEEEEeccchH--HHHHHHH---HHHHHHhCCcceEEeecCccCchhHHHHHHhCccee---
Confidence            466677776652  579999775544432  2223333   455555543 45556666688999999999998864   


Q ss_pred             ccccCC-CCHHHHHHHHHHHHHH
Q 033625           89 SSVFGA-PEPAHVISLMRKSVED  110 (115)
Q Consensus        89 saif~~-~d~~~~~~~l~~~~~~  110 (115)
                         |.. .+..+.+..+++.+.+
T Consensus       120 ---f~pgt~~~~~~~~v~~~l~~  139 (143)
T COG2185         120 ---FGPGTPIEEALSDLLTRLGA  139 (143)
T ss_pred             ---eCCCCCHHHHHHHHHHHHHh
Confidence               554 4668888888887766

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=94.00  E-value=0.52  Score=38.91  Aligned_cols=77  Identities=10%  Similarity=0.101  Sum_probs=52.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      .+.+.|+|=..+  ...-.......++|   ....| +..+++-+||+ ++.+..+.. |+|.+.+|+++.+++||.+.+
T Consensus       178 ~~a~iiGiNnRd--L~t~~vd~~~~~~l---~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~  251 (454)
T PRK09427        178 LGAKVIGINNRN--LRDLSIDLNRTREL---APLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAV  251 (454)
T ss_pred             CCCCEEEEeCCC--CccceECHHHHHHH---HhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHH
Confidence            477777643332  22223334444343   34443 46667789986 578888865 799999999999999999999


Q ss_pred             HHHHH
Q 033625          102 SLMRK  106 (115)
Q Consensus       102 ~~l~~  106 (115)
                      ++|..
T Consensus       252 ~~L~~  256 (454)
T PRK09427        252 RKLIL  256 (454)
T ss_pred             HHHhc
Confidence            88854

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=93.97  E-value=0.24  Score=39.86  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=30.3

Q ss_pred             CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC
Q 033625           60 SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        60 ~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .+|+.+||||. ...+...+.+|||.+.+|+.+...
T Consensus       255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a  290 (369)
T TIGR01304       255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA  290 (369)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence            48999999995 677888889999999999998753

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

Probab=93.95  E-value=0.12  Score=38.74  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             HhHHHhHh-CCCCCCEEEEEeeeCCCCC-cccchhHHHHHHHHHhhC--C-CC---cEEEEcCCChhhHHHHHHcCCCEE
Q 033625           14 EEVYPLVE-GANPVEMVLVMTVEPGFGG-QKFMPEMMDKVRSLRNRY--P-SL---DIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus        14 ~~~~~~~~-~~~~vD~vlvm~v~pG~~g-q~~~~~~~~ki~~l~~~~--~-~~---~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      ..+...+. ..+.+.+.++|++.|-... ..-....++++.++++..  . ++   .-.+..|.|.+ +....+.|+..+
T Consensus       141 ~~l~~~i~~~~~~L~l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D-~~~Ai~~GsT~V  219 (227)
T cd06822         141 VELVKHIIEECPNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSAD-FEHAIEMGSTNV  219 (227)
T ss_pred             HHHHHHHHhhCCCceEEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHh-HHHHHHcCCCEE
Confidence            33444442 4478999999988774332 122244566666664421  1 12   24677887877 444556999999


Q ss_pred             EEcccccC
Q 033625           86 VAGSSVFG   93 (115)
Q Consensus        86 v~Gsaif~   93 (115)
                      =+||+||+
T Consensus       220 RiGt~IFg  227 (227)
T cd06822         220 RVGSAIFG  227 (227)
T ss_pred             eCCchhcC
Confidence            99999994

This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=93.93  E-value=1.4  Score=30.51  Aligned_cols=90  Identities=17%  Similarity=0.136  Sum_probs=51.0

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC---CChhhHH----HHHH
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIA----EAAS   79 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG---I~~~ni~----~l~~   79 (115)
                      |..++|.+.+-+...+ .++|.|.+-+...    +.. +..-+-++++++....-+.++.||   |..+..+    .+.+
T Consensus        35 LG~~v~~e~~v~aa~~-~~adiVglS~l~~----~~~-~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~  108 (134)
T TIGR01501        35 LGVLSPQEEFIKAAIE-TKADAILVSSLYG----HGE-IDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKE  108 (134)
T ss_pred             CCCCCCHHHHHHHHHH-cCCCEEEEecccc----cCH-HHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHH
Confidence            4566776654444433 5899998755442    222 122233455555544334567788   4555554    5889


Q ss_pred             cCCCEEEEcccccCC-CCHHHHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFGA-PEPAHVISLMRKSV  108 (115)
Q Consensus        80 ~Gad~iv~Gsaif~~-~d~~~~~~~l~~~~  108 (115)
                      +|.|.      +|.. ..+.+.+..++..+
T Consensus       109 ~Gv~~------vF~pgt~~~~iv~~l~~~~  132 (134)
T TIGR01501       109 MGFDR------VFAPGTPPEVVIADLKKDL  132 (134)
T ss_pred             cCCCE------EECcCCCHHHHHHHHHHHh
Confidence            99664      5543 35667777776654

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=93.89  E-value=0.81  Score=36.18  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~G   88 (115)
                      +.+.+++++--.+|+|.+-+.|-      .....++.++++++..| .++.+.|+ .+.+....+.++|||.+.+|
T Consensus        97 ~r~~~lv~a~~~~d~i~~D~ahg------~s~~~~~~i~~i~~~~p-~~~vi~GnV~t~e~a~~l~~aGad~I~V~  165 (321)
T TIGR01306        97 EFVTQLAEEALTPEYITIDIAHG------HSNSVINMIKHIKTHLP-DSFVIAGNVGTPEAVRELENAGADATKVG  165 (321)
T ss_pred             HHHHHHHhcCCCCCEEEEeCccC------chHHHHHHHHHHHHhCC-CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence            55666663211269887543332      23467778888888764 45666663 47888889999999999887

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=93.85  E-value=1  Score=35.82  Aligned_cols=95  Identities=19%  Similarity=0.328  Sum_probs=67.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhh-HHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPST-IAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~n-i~~l~~~Gad~iv~G   88 (115)
                      |..++...+-   .+++-|+|  .|-|-..+++.+.+++-+.++-+. ...+|+..|||+...| +-..+..||..+-+|
T Consensus       233 t~eDA~~Ave---~G~~GIIV--SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiG  307 (363)
T KOG0538|consen  233 TGEDARKAVE---AGVAGIIV--SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIG  307 (363)
T ss_pred             ccHHHHHHHH---hCCceEEE--eCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEec
Confidence            3445555555   67888765  456666677888888887777554 3469999999998654 555668999999999


Q ss_pred             cc-ccC-----CCCHHHHHHHHHHHHHH
Q 033625           89 SS-VFG-----APEPAHVISLMRKSVED  110 (115)
Q Consensus        89 sa-if~-----~~d~~~~~~~l~~~~~~  110 (115)
                      +- +|.     ..-.++.++-|++.++-
T Consensus       308 RP~v~gLA~~Ge~GV~~vl~iL~~efe~  335 (363)
T KOG0538|consen  308 RPIVWGLAAKGEAGVKKVLDILRDEFEL  335 (363)
T ss_pred             CchheeeccccchhHHHHHHHHHHHHHH
Confidence            76 454     33467777777777653

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=93.78  E-value=0.39  Score=39.78  Aligned_cols=77  Identities=30%  Similarity=0.427  Sum_probs=47.6

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCC-------CC--cccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGF-------GG--QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG   81 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~-------~g--q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~G   81 (115)
                      ..+..+.+++  .++|+|-| ++-||.       +|  .+.....++-.+.+++.  ++|+.+||||+ ...+...+.+|
T Consensus       276 t~~~~~~l~~--~G~d~i~v-g~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~G  350 (475)
T TIGR01303       276 SAEGVRDLLE--AGANIIKV-GVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAG  350 (475)
T ss_pred             CHHHHHHHHH--hCCCEEEE-CCcCCccccCccccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcC
Confidence            3444455551  58999864 234442       22  22222222333333333  79999999996 67788888999


Q ss_pred             CCEEEEcccccC
Q 033625           82 ANCIVAGSSVFG   93 (115)
Q Consensus        82 ad~iv~Gsaif~   93 (115)
                      ||.+.+||.+-.
T Consensus       351 A~~vm~g~~~ag  362 (475)
T TIGR01303       351 ASNVMVGSWFAG  362 (475)
T ss_pred             CCEEeechhhcc
Confidence            999999987643

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=93.63  E-value=0.46  Score=38.00  Aligned_cols=78  Identities=18%  Similarity=0.190  Sum_probs=54.6

Q ss_pred             EEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625           30 LVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~   95 (115)
                      ++++-+|    |.+|+...+    +..+.|++. .+.    .++++|.-=|+++++|+.++ .+.++|++-+|++..+++
T Consensus       170 ~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~  249 (355)
T PRK14905        170 LFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWDAQ  249 (355)
T ss_pred             eEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhccHH
Confidence            4566677    544565554    344444432 222    23589999999999999986 677899999999998888


Q ss_pred             CHHHHHHHHHHH
Q 033625           96 EPAHVISLMRKS  107 (115)
Q Consensus        96 d~~~~~~~l~~~  107 (115)
                      ++.+-++.+.+.
T Consensus       250 ~f~~Ii~~~~~~  261 (355)
T PRK14905        250 CFHALIADALKA  261 (355)
T ss_pred             HHHHHHHHHHHh
Confidence            887666665543

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=93.36  E-value=0.26  Score=37.36  Aligned_cols=67  Identities=25%  Similarity=0.296  Sum_probs=47.4

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHH-HHcCCCEEE
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEA-ASAGANCIV   86 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l-~~~Gad~iv   86 (115)
                      |.+.++.+++  -++..||      ..+|..--.+.+++++++-+.. ..+.|.+-|||+.+|+..+ ...|+.-+=
T Consensus       130 ~~~ale~li~--~Gv~RIL------TsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~H  198 (241)
T COG3142         130 PLEALEQLIE--LGVERIL------TSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEVH  198 (241)
T ss_pred             HHHHHHHHHH--CCCcEEe------cCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhhh
Confidence            6666666662  2566665      3334444567778888876654 3588999999999999998 778877653

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=93.34  E-value=0.25  Score=37.45  Aligned_cols=39  Identities=18%  Similarity=0.272  Sum_probs=34.1

Q ss_pred             CCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCH
Q 033625           59 PSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEP   97 (115)
Q Consensus        59 ~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~   97 (115)
                      ++++|.-=|+|+++|+.++...+ +|++-+|++-.+.+++
T Consensus       198 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f  237 (242)
T cd00311         198 EKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAESF  237 (242)
T ss_pred             CceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHHHH
Confidence            36899999999999999999998 9999999998765444

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=92.97  E-value=0.76  Score=36.82  Aligned_cols=75  Identities=27%  Similarity=0.418  Sum_probs=45.5

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCC---------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFG---------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN   83 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~---------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad   83 (115)
                      +..+.++.  .++|.|-| .+-||.-         |.+.. ...-...+.++.+ .+||.+||||+ ..++-..+.+|||
T Consensus       161 e~a~~L~~--aGad~vkV-GiGpGsiCtTr~v~GvG~PQ~-tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~GAd  235 (352)
T PF00478_consen  161 EGAKDLID--AGADAVKV-GIGPGSICTTREVTGVGVPQL-TAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAAGAD  235 (352)
T ss_dssp             HHHHHHHH--TT-SEEEE-SSSSSTTBHHHHHHSBSCTHH-HHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHTT-S
T ss_pred             HHHHHHHH--cCCCEEEE-eccCCcccccccccccCCcHH-HHHHHHHHHhhhc-cCceeecCCcCcccceeeeeeeccc
Confidence            33444442  57999876 4566641         22222 2333334444433 79999999997 5678888899999


Q ss_pred             EEEEcccccC
Q 033625           84 CIVAGSSVFG   93 (115)
Q Consensus        84 ~iv~Gsaif~   93 (115)
                      .+-+||.+-+
T Consensus       236 ~VMlG~llAg  245 (352)
T PF00478_consen  236 AVMLGSLLAG  245 (352)
T ss_dssp             EEEESTTTTT
T ss_pred             ceeechhhcc
Confidence            9999987654

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=92.91  E-value=0.84  Score=36.47  Aligned_cols=81  Identities=20%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--CCcccc---hhHHHHHHHHHhh--CCCCcEEEEcCCCh-hhHHHHHH
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GGQKFM---PEMMDKVRSLRNR--YPSLDIEVDGGLGP-STIAEAAS   79 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~~---~~~~~ki~~l~~~--~~~~~i~~dGGI~~-~ni~~l~~   79 (115)
                      |.-|+.....-+.   .++|.|.| ++-||.  +++...   -..+.-+.+.++.  ..++||.+||||+. ..+-.-+.
T Consensus       157 NV~T~e~a~~Li~---aGAD~ikV-giGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA  232 (343)
T TIGR01305       157 NVVTGEMVEELIL---SGADIVKV-GIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG  232 (343)
T ss_pred             cccCHHHHHHHHH---cCCCEEEE-cccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH
Confidence            3455555554444   68998754 566763  333221   1233444444432  23689999999974 45666678


Q ss_pred             cCCCEEEEccccc
Q 033625           80 AGANCIVAGSSVF   92 (115)
Q Consensus        80 ~Gad~iv~Gsaif   92 (115)
                      +|||.+-+|+.+-
T Consensus       233 ~GAd~VMlG~llA  245 (343)
T TIGR01305       233 AGADFVMLGGMFA  245 (343)
T ss_pred             cCCCEEEECHhhh
Confidence            9999999996554

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=92.86  E-value=0.62  Score=35.08  Aligned_cols=82  Identities=23%  Similarity=0.353  Sum_probs=54.9

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANC   84 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~   84 (115)
                      -|.|+-+..+-+.+.++.+=|+.   ..-|.+|..  .....-+.++++|+.-.+.|+.+-=|++ +|+.+++..- ||+
T Consensus       156 aPsTtdeRmell~~~adsFiYvV---SrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDG  231 (268)
T KOG4175|consen  156 APSTTDERMELLVEAADSFIYVV---SRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADG  231 (268)
T ss_pred             CCCChHHHHHHHHHhhcceEEEE---EeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccc
Confidence            47888888887774444443432   334555432  2333444466666665688998887775 7888988776 999


Q ss_pred             EEEcccccC
Q 033625           85 IVAGSSVFG   93 (115)
Q Consensus        85 iv~Gsaif~   93 (115)
                      +|+||.|..
T Consensus       232 VvvGSkiv~  240 (268)
T KOG4175|consen  232 VVVGSKIVK  240 (268)
T ss_pred             eEecHHHHH
Confidence            999999763

>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase

Probab=92.52  E-value=1.4  Score=32.62  Aligned_cols=86  Identities=9%  Similarity=0.150  Sum_probs=54.3

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhH-HHH---HHcC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTI-AEA---ASAG   81 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni-~~l---~~~G   81 (115)
                      -|.+++|.+.+...+.. ..+|+|.+-+..+.     -.+...+-++++++..++++|.+=|..-.+.. ...   ...|
T Consensus       121 ~LG~~vp~e~~v~~~~~-~~~~~V~lS~~~~~-----~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~~~~~~~~~g  194 (213)
T cd02069         121 DLGVMVPIEKILEAAKE-HKADIIGLSGLLVP-----SLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTAVKIAPEYDG  194 (213)
T ss_pred             ECCCCCCHHHHHHHHHH-cCCCEEEEccchhc-----cHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHhhhhccccCC
Confidence            46688999988888855 68999987555442     12344455777777766788887774433333 321   4569


Q ss_pred             CCEEEEcccccCCCCHHHHHHHHH
Q 033625           82 ANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        82 ad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      ||..        .+|..++++..+
T Consensus       195 ad~y--------~~da~~~v~~~~  210 (213)
T cd02069         195 PVVY--------VKDASRALGVAN  210 (213)
T ss_pred             CceE--------ecCHHHHHHHHH
Confidence            9876        456555555443

This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).

>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=92.46  E-value=0.36  Score=36.07  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=35.7

Q ss_pred             EEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHH
Q 033625           63 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP-AHVISLMRK  106 (115)
Q Consensus        63 i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~-~~~~~~l~~  106 (115)
                      +.+-||||.+|.-..++-||.-+++.|-+|..... .++.+.+.+
T Consensus        85 LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL~RLk~i~s  129 (263)
T KOG3055|consen   85 LQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDLERLKDIVS  129 (263)
T ss_pred             eeecCccChHHHHHHHHhcCceEEEEEEeccCCcccHHHHHHHHH
Confidence            88999999999999999999999999999985533 344444443

>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]

Probab=92.29  E-value=0.24  Score=40.02  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCC--CHHHHHHHHHHHHH
Q 033625           35 EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAP--EPAHVISLMRKSVE  109 (115)
Q Consensus        35 ~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~--d~~~~~~~l~~~~~  109 (115)
                      .-||++....|-.+.++-.+.++...+++...|||- .++..+++-+|++.+=+.+++...+  ....-+.+|+..++
T Consensus       331 ~GG~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~Ca~LK~~m~  408 (471)
T KOG1799|consen  331 PGGYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTLCAELKDFMK  408 (471)
T ss_pred             CCCccccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCcchHHHHHHHHHHHHH
Confidence            346788888999999999998887899999999994 5677788888999998888887543  44566666666554

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=92.23  E-value=1.5  Score=34.79  Aligned_cols=74  Identities=20%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCC-----CcccchhHHHHHHHHHhhCCCCcEEE---EcCCChhhHHHHHHcCCCE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANC   84 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~-----gq~~~~~~~~ki~~l~~~~~~~~i~~---dGGI~~~ni~~l~~~Gad~   84 (115)
                      .+.+...++. -..|.+-+- ++|+..     +.......++.|+.+++.. ++|+.+   -.|.+.+.+..+.++|+|.
T Consensus       137 ~~~~~~~~~~-~~adal~l~-l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~  213 (352)
T PRK05437        137 VEEAQRAVEM-IEADALQIH-LNPLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKA  213 (352)
T ss_pred             HHHHHHHHHh-cCCCcEEEe-CccchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCE
Confidence            5556655533 256777653 344321     1111123456778887764 688886   4569999999999999999


Q ss_pred             EEEcc
Q 033625           85 IVAGS   89 (115)
Q Consensus        85 iv~Gs   89 (115)
                      ++++.
T Consensus       214 I~Vsg  218 (352)
T PRK05437        214 IDVAG  218 (352)
T ss_pred             EEECC
Confidence            99854

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=92.18  E-value=1.1  Score=35.89  Aligned_cols=82  Identities=23%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--CCccc---chhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHHHH
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GGQKF---MPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAAS   79 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~---~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l~~   79 (115)
                      |..|+. ..++++.  .++|.|-| .+-||.  +.+..   .-..+.-+.+.++.  ..+.||.+||||+ ...+..-+.
T Consensus       158 NV~T~e-~a~~Li~--aGAD~vKV-GIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAla  233 (346)
T PRK05096        158 NVVTGE-MVEELIL--SGADIVKV-GIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFG  233 (346)
T ss_pred             cccCHH-HHHHHHH--cCCCEEEE-cccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHH
Confidence            444554 4444441  58997643 567773  22211   11122222222221  2478999999997 446666678


Q ss_pred             cCCCEEEEcccccC
Q 033625           80 AGANCIVAGSSVFG   93 (115)
Q Consensus        80 ~Gad~iv~Gsaif~   93 (115)
                      +|||.+-+||.+-.
T Consensus       234 aGAd~VMlGsllAG  247 (346)
T PRK05096        234 GGADFVMLGGMLAG  247 (346)
T ss_pred             cCCCEEEeChhhcC
Confidence            99999999987644

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=91.96  E-value=0.59  Score=35.62  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=37.8

Q ss_pred             CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           59 PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        59 ~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ++++|.-=|+|+++|+.++ ...++|++-+|++.++.+++.+-++.
T Consensus       202 ~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii~~  247 (250)
T PRK00042        202 EKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAEDFLAIVKA  247 (250)
T ss_pred             CCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeechHHHHHHHHH
Confidence            3588999999999999886 67889999999999887777665543

>PLN02623 pyruvate kinase

Probab=91.75  E-value=2.1  Score=36.54  Aligned_cols=97  Identities=14%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHHhhCCCCcEEEEc--------CCCh-----hhHHH
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRNRYPSLDIEVDG--------GLGP-----STIAE   76 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~~~~~~~~i~~dG--------GI~~-----~ni~~   76 (115)
                      .-++.+++++   ..+|.|++..-+-|.. |-.-.+...+++-+.++.. +.|+.+..        .-++     ..+..
T Consensus       330 eaVeNldeIl---~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~-gKpvivaTQMLESMi~~~~PTRAEv~Dva~  405 (581)
T PLN02623        330 DSIPNLHSII---TASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSM-GKPVIVATNMLESMIVHPTPTRAEVSDIAI  405 (581)
T ss_pred             HHHHhHHHHH---HhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHh-CCCEEEECchhhhcccCCCCCchhHHHHHH
Confidence            3457889999   7899998644333211 1122233444433333332 56766544        1244     47888


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      ....|+|.+.+++...-..-|.++++.++++..++
T Consensus       406 av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~a  440 (581)
T PLN02623        406 AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT  440 (581)
T ss_pred             HHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHH
Confidence            88999999999988776789999999999887653

>PLN02429 triosephosphate isomerase

Probab=91.73  E-value=0.84  Score=36.05  Aligned_cols=73  Identities=21%  Similarity=0.303  Sum_probs=50.3

Q ss_pred             EEeeeCCC---CCcccchhHHHHHHHH-Hh---------hCCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCC
Q 033625           31 VMTVEPGF---GGQKFMPEMMDKVRSL-RN---------RYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        31 vm~v~pG~---~gq~~~~~~~~ki~~l-~~---------~~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d   96 (115)
                      +++-+|-.   +|+.-.++..+.+.+. |+         ...+++|.-=|+|+++|+.++ .+.++|++-+|++..+.++
T Consensus       221 vIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~~  300 (315)
T PLN02429        221 VVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPE  300 (315)
T ss_pred             EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHHH
Confidence            45666732   5665555554543332 21         124689999999999999886 5789999999999887777


Q ss_pred             HHHHHHH
Q 033625           97 PAHVISL  103 (115)
Q Consensus        97 ~~~~~~~  103 (115)
                      +.+-++.
T Consensus       301 F~~Ii~~  307 (315)
T PLN02429        301 FATIVNS  307 (315)
T ss_pred             HHHHHHH
Confidence            6655543

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=91.37  E-value=0.74  Score=33.54  Aligned_cols=56  Identities=18%  Similarity=0.363  Sum_probs=37.1

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|+|=   +..||....   .+++.++.+++.. .+++|-+.|||+ .+...++.++|++-|
T Consensus       143 ~GaD~IK---TsTG~~~~~---at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~ri  200 (203)
T cd00959         143 AGADFIK---TSTGFGPGG---ATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRI  200 (203)
T ss_pred             hCCCEEE---cCCCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence            4788884   456665333   3344444444433 468999999998 666777888998865

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=91.31  E-value=0.8  Score=35.65  Aligned_cols=75  Identities=16%  Similarity=0.354  Sum_probs=46.4

Q ss_pred             HHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-CCCEEEEccccc
Q 033625           16 VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-GANCIVAGSSVF   92 (115)
Q Consensus        16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-Gad~iv~Gsaif   92 (115)
                      +...+++ .++|.|.   ||+-...|.+. +.-++.+.++++.. ++|+.+=|+|+ .+.+..+.+. |+|.+.+|++.+
T Consensus       143 ~~~~l~~-~G~~~i~---vH~Rt~~q~~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal  217 (309)
T PF01207_consen  143 FARILED-AGVSAIT---VHGRTRKQRYKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGAL  217 (309)
T ss_dssp             HHHHHHH-TT--EEE---EECS-TTCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHC
T ss_pred             HHHHhhh-cccceEE---EecCchhhcCCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhh
Confidence            3334444 4688885   78876666664 56677788888775 49999999995 6677776554 999999998766


Q ss_pred             CCC
Q 033625           93 GAP   95 (115)
Q Consensus        93 ~~~   95 (115)
                      ..+
T Consensus       218 ~nP  220 (309)
T PF01207_consen  218 GNP  220 (309)
T ss_dssp             C-C
T ss_pred             hcC
Confidence            544

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=91.20  E-value=2.1  Score=33.59  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=47.5

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCC-----CcccchhHHHHHHHHHhhCCCCcEEEE---cCCChhhHHHHHHcCCC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFG-----GQKFMPEMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAASAGAN   83 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~-----gq~~~~~~~~ki~~l~~~~~~~~i~~d---GGI~~~ni~~l~~~Gad   83 (115)
                      +.+.+...++. -..|++-+ .++|...     +.......++.|+++++.. ++|+.+=   -|.+.+.+..+.++|+|
T Consensus       128 ~~~~~~~~i~~-~~adalel-~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd  204 (326)
T cd02811         128 GVEEARRAVEM-IEADALAI-HLNPLQEAVQPEGDRDFRGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVK  204 (326)
T ss_pred             CHHHHHHHHHh-cCCCcEEE-eCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCC
Confidence            45555655533 25777765 2344211     2111123446778777764 6888874   34899999999999999


Q ss_pred             EEEEcc
Q 033625           84 CIVAGS   89 (115)
Q Consensus        84 ~iv~Gs   89 (115)
                      .+++++
T Consensus       205 ~I~vsG  210 (326)
T cd02811         205 AIDVAG  210 (326)
T ss_pred             EEEECC
Confidence            999854

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=91.15  E-value=4.9  Score=32.27  Aligned_cols=99  Identities=19%  Similarity=0.298  Sum_probs=59.8

Q ss_pred             eEEEecCCCC-------H---HhHHHhHhCCCC-CCEEEEEeeeCCCCCcc-cc-h-hHHHHHHHHHhhCCCCcEEEEcC
Q 033625            3 PGVALKPGTS-------V---EEVYPLVEGANP-VEMVLVMTVEPGFGGQK-FM-P-EMMDKVRSLRNRYPSLDIEVDGG   68 (115)
Q Consensus         3 ~Glal~p~t~-------~---~~~~~~~~~~~~-vD~vlvm~v~pG~~gq~-~~-~-~~~~ki~~l~~~~~~~~i~~dGG   68 (115)
                      +|+=|+|...       +   ..+.+.|++ .+ +||+-+..-..--.+.. .. + ........++... ..|+.+.|+
T Consensus       219 vg~Rls~~d~~~~~g~~~~e~~~la~~L~~-~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-~~pvi~~G~  296 (363)
T COG1902         219 VGVRLSPDDFFDGGGLTIEEAVELAKALEE-AGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-RIPVIAVGG  296 (363)
T ss_pred             EEEEECccccCCCCCCCHHHHHHHHHHHHh-cCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-CCCEEEeCC
Confidence            5666776544       1   233444433 34 79998754322111111 11 1 1112233344332 499999997


Q ss_pred             C-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHHH
Q 033625           69 L-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        69 I-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      | +++...++++.| ||.+.+|+++...+|+...+++
T Consensus       297 i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~  333 (363)
T COG1902         297 INDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAE  333 (363)
T ss_pred             CCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHc
Confidence            5 688888999998 9999999999998987655543

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=91.06  E-value=2.2  Score=32.04  Aligned_cols=86  Identities=16%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      ...+|.+..+..- +..|.|.+---.-| +..-|..+.+.++..+.    .-|+..-|||. +|.+..+...|++.+.++
T Consensus       137 ed~le~Vk~l~~~-~~~~lIvLDi~aVG-t~~G~~~E~l~~~~~~s----~~pVllGGGV~g~Edlel~~~~Gv~gvLva  210 (229)
T COG1411         137 EDFLETVKDLNYR-RDPGLIVLDIGAVG-TKSGPDYELLTKVLELS----EHPVLLGGGVGGMEDLELLLGMGVSGVLVA  210 (229)
T ss_pred             hhHHHHHHHHhcc-CCCCeEEEEccccc-cccCCCHHHHHHHHHhc----cCceeecCCcCcHHHHHHHhcCCCceeeeh
Confidence            3444555554411 34555543222223 22236666666655442    46789999997 567777778999999999


Q ss_pred             ccccCCCCHHHHH
Q 033625           89 SSVFGAPEPAHVI  101 (115)
Q Consensus        89 saif~~~d~~~~~  101 (115)
                      ++|++...|.+..
T Consensus       211 Talh~G~vple~~  223 (229)
T COG1411         211 TALHEGVVPLEVE  223 (229)
T ss_pred             hhhhcCcCcHHHH
Confidence            9999987775543

>COG1692 Calcineurin-like phosphoesterase [General function prediction only]

Probab=90.70  E-value=1.3  Score=34.03  Aligned_cols=64  Identities=23%  Similarity=0.391  Sum_probs=44.7

Q ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--------CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           36 PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--------GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        36 pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--------GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      -|..|.+.   ..+.|.++++.+ ++.+++..        ||+++...+++++|+|++-+|--.|..++.-+.+.+
T Consensus        10 vGk~Gr~~---v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~~   81 (266)
T COG1692          10 VGKPGRKA---VKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFIDN   81 (266)
T ss_pred             cCcchHHH---HHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhhc
Confidence            35555553   344566666654 34444443        799999999999999999999889987766554443

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=90.59  E-value=4.8  Score=33.97  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsa   90 (115)
                      ++..+.+. + -++--|++-+++-.-+.+-+..+.++.   +++. .++|+.+.||+ +++.+.++.. .|||....+|.
T Consensus       441 ~~~~~~~~-~-~Gageil~t~id~DGt~~G~d~~l~~~---v~~~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~  514 (538)
T PLN02617        441 YELAKAVE-E-LGAGEILLNCIDCDGQGKGFDIELVKL---VSDA-VTIPVIASSGAGTPEHFSDVFSKTNASAALAAGI  514 (538)
T ss_pred             HHHHHHHH-h-cCCCEEEEeeccccccccCcCHHHHHH---HHhh-CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEee
Confidence            45555555 1 368889988888765666665555444   4444 47999999998 4788887765 77898777664


Q ss_pred             c
Q 033625           91 V   91 (115)
Q Consensus        91 i   91 (115)
                      .
T Consensus       515 f  515 (538)
T PLN02617        515 F  515 (538)
T ss_pred             e
Confidence            3

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=90.58  E-value=0.96  Score=36.22  Aligned_cols=39  Identities=21%  Similarity=0.355  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCChh------hHHHH---HHcCCCEEEEcccccCCCCHH
Q 033625           60 SLDIEVDGGLGPS------TIAEA---ASAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        60 ~~~i~~dGGI~~~------ni~~l---~~~Gad~iv~Gsaif~~~d~~   98 (115)
                      ..|+.+.||=+.+      .+...   .++|+.++++|+.||+.++++
T Consensus       281 ~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~e  328 (348)
T PRK09250        281 RRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAE  328 (348)
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHH
Confidence            5899999998842      24456   678999999999999988763

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=90.53  E-value=0.74  Score=34.21  Aligned_cols=55  Identities=25%  Similarity=0.387  Sum_probs=43.6

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +++.|=+-     +..    ++.++-|+++++.+|++.|.++.=++.+.++...++||+++++=
T Consensus        40 Gi~~iEit-----l~~----~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP   94 (212)
T PRK05718         40 GLPVLEVT-----LRT----PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP   94 (212)
T ss_pred             CCCEEEEe-----cCC----ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence            57776442     222    35677788888888888899999999999999999999998764

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=90.46  E-value=4.3  Score=27.96  Aligned_cols=87  Identities=16%  Similarity=0.120  Sum_probs=48.7

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC--Chhh----HHHHHH
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL--GPST----IAEAAS   79 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI--~~~n----i~~l~~   79 (115)
                      |..+.|.+.+-+...+ ..+|.|.+-+....    .. +..-+-++++++... ++++.+=|++  ..+.    .+.|.+
T Consensus        33 LG~~v~~e~~v~aa~~-~~adiVglS~L~t~----~~-~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~  106 (128)
T cd02072          33 LGVLSPQEEFIDAAIE-TDADAILVSSLYGH----GE-IDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKE  106 (128)
T ss_pred             CCCCCCHHHHHHHHHH-cCCCEEEEeccccC----CH-HHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHH
Confidence            4456666655444433 58999987544433    11 223333555555543 6666666664  4344    466999


Q ss_pred             cCCCEEEEcccccCCC-CHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFGAP-EPAHVISLMR  105 (115)
Q Consensus        80 ~Gad~iv~Gsaif~~~-d~~~~~~~l~  105 (115)
                      +|+|.      +|... ++.+.+..|+
T Consensus       107 ~Gv~~------vf~pgt~~~~i~~~l~  127 (128)
T cd02072         107 MGFDR------VFAPGTPPEEAIADLK  127 (128)
T ss_pred             cCCCE------EECcCCCHHHHHHHHh
Confidence            99764      46543 5566655554

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=90.35  E-value=0.88  Score=33.73  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=40.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc----EEEEcCCChh-------hHHHHHHcCC--CEEEEccc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD----IEVDGGLGPS-------TIAEAASAGA--NCIVAGSS   90 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~----i~~dGGI~~~-------ni~~l~~~Ga--d~iv~Gsa   90 (115)
                      .++|+|=   +..|+. ........+.++++.+.. ++|    +.+.||++.+       ...++.++||  -++..|..
T Consensus       158 ~GaD~vK---t~tg~~-~~~t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~  232 (236)
T PF01791_consen  158 LGADFVK---TSTGKP-VGATPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRN  232 (236)
T ss_dssp             TT-SEEE---EE-SSS-SCSHHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHH
T ss_pred             hCCCEEE---ecCCcc-ccccHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            5889996   333322 333334444555554422 355    9999999444       4445669999  88888888


Q ss_pred             ccC
Q 033625           91 VFG   93 (115)
Q Consensus        91 if~   93 (115)
                      ||+
T Consensus       233 i~q  235 (236)
T PF01791_consen  233 IWQ  235 (236)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            886

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK09426 methylmalonyl-CoA mutase; Reviewed

Probab=90.14  E-value=3.8  Score=35.73  Aligned_cols=86  Identities=19%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      +.+.++..+ + .++|+|.|-+...+|..+  .+..   ++.+++... ++++.+-|.+.++....+.++|+|.+     
T Consensus       622 ~e~~v~aa~-~-~~a~ivvlcs~d~~~~e~--~~~l---~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~-----  689 (714)
T PRK09426        622 PEEAARQAV-E-NDVHVVGVSSLAAGHKTL--VPAL---IEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAI-----  689 (714)
T ss_pred             HHHHHHHHH-H-cCCCEEEEeccchhhHHH--HHHH---HHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEE-----
Confidence            344555555 2 589988776555554432  2333   445555533 46666666668888899999999987     


Q ss_pred             ccCCCCHHHHHHHHHHHHH
Q 033625           91 VFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        91 if~~~d~~~~~~~l~~~~~  109 (115)
                      |+-..|..+.+..+++.+.
T Consensus       690 i~~g~d~~~~L~~l~~~l~  708 (714)
T PRK09426        690 FGPGTVIADAAIDLLELLS  708 (714)
T ss_pred             ECCCCCHHHHHHHHHHHHH
Confidence            4555688899999888874

>PRK15492 triosephosphate isomerase; Provisional

Probab=90.12  E-value=1.3  Score=33.93  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             EEEeeeC----CCCCcccch----hHHHHHHHH-Hhh----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625           30 LVMTVEP----GFGGQKFMP----EMMDKVRSL-RNR----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~p----G~~gq~~~~----~~~~ki~~l-~~~----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~   95 (115)
                      ++++-+|    |.+|....+    +..+.|++. ++.    .++++|.-=|+|+++|+.++ ....+|++-+|++=...+
T Consensus       169 iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~~~  248 (260)
T PRK15492        169 LRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDAD  248 (260)
T ss_pred             eEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcCHH
Confidence            4566677    444665544    344445543 322    23689999999999999998 555699999998765544


Q ss_pred             CHHHH
Q 033625           96 EPAHV  100 (115)
Q Consensus        96 d~~~~  100 (115)
                      +..+-
T Consensus       249 ~F~~I  253 (260)
T PRK15492        249 KFFAI  253 (260)
T ss_pred             HHHHH
Confidence            44333

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=90.08  E-value=1.8  Score=34.09  Aligned_cols=51  Identities=14%  Similarity=0.326  Sum_probs=37.8

Q ss_pred             HHHHHhhCCCCcEEEEcCCChhh-HHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           51 VRSLRNRYPSLDIEVDGGLGPST-IAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        51 i~~l~~~~~~~~i~~dGGI~~~n-i~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .+.+++.. +.|+.+.||++... ..++++.| +|.+.+|+++...+|+.+.++
T Consensus       283 a~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~  335 (341)
T PF00724_consen  283 AEAIKKAV-KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAR  335 (341)
T ss_dssp             HHHHHHHH-SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHH
T ss_pred             hhhhhhhc-CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHH
Confidence            34445443 68999999998777 66665655 999999999998898765544

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=90.06  E-value=1.7  Score=36.04  Aligned_cols=67  Identities=21%  Similarity=0.340  Sum_probs=47.7

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +.++.+++  .++|.|.+-+.+-      ......+.++++++.+|+.++.+=-=.|.+....+.++|||++-+|
T Consensus       230 ~~a~~Lv~--aGvd~i~~D~a~~------~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg  296 (479)
T PRK07807        230 AKARALLE--AGVDVLVVDTAHG------HQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG  296 (479)
T ss_pred             HHHHHHHH--hCCCEEEEeccCC------ccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC
Confidence            55666662  4799976544332      1345677788999888887766633348899999999999999844

>PTZ00333 triosephosphate isomerase; Provisional

Probab=89.99  E-value=2.2  Score=32.65  Aligned_cols=71  Identities=18%  Similarity=0.336  Sum_probs=47.5

Q ss_pred             EEEeeeCCC---CCcccchhHHHH-HHHHHh----h-----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDK-VRSLRN----R-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~k-i~~l~~----~-----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~   95 (115)
                      ++++-+|-.   +|+...++..+. .+.+|+    .     ..+.+|.-=|+|+++|+.++ ...++|++-+|++..+ +
T Consensus       164 iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~  242 (255)
T PTZ00333        164 IVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-P  242 (255)
T ss_pred             EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-h
Confidence            355667732   566555554443 223333    1     23589999999999999875 6788999999999876 3


Q ss_pred             CHHHHH
Q 033625           96 EPAHVI  101 (115)
Q Consensus        96 d~~~~~  101 (115)
                      ++.+-+
T Consensus       243 ~f~~Ii  248 (255)
T PTZ00333        243 DFVDII  248 (255)
T ss_pred             hHHHHH
Confidence            554443

>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins

Probab=89.81  E-value=5.1  Score=29.04  Aligned_cols=73  Identities=16%  Similarity=0.152  Sum_probs=47.3

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEcCCChhhHHHHHHcCCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      -|.+++|.+.+...+.. ..+|+|.+-+..+.     -.+...+-++++++..+  +++|.+=|..=.+  ......|||
T Consensus       115 ~lG~~~p~~~l~~~~~~-~~~d~v~lS~~~~~-----~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~--~~~~~~GaD  186 (201)
T cd02070         115 DLGRDVPPEEFVEAVKE-HKPDILGLSALMTT-----TMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ--EFADEIGAD  186 (201)
T ss_pred             ECCCCCCHHHHHHHHHH-cCCCEEEEeccccc-----cHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH--HHHHHcCCc
Confidence            46788999888887754 68999876544332     12345555777777755  6777777743322  244567999


Q ss_pred             EEE
Q 033625           84 CIV   86 (115)
Q Consensus        84 ~iv   86 (115)
                      ..+
T Consensus       187 ~~~  189 (201)
T cd02070         187 GYA  189 (201)
T ss_pred             EEE
Confidence            873

A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=89.23  E-value=2.5  Score=33.47  Aligned_cols=84  Identities=15%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCC-Cc--cc--chhHHHHHHHHH--hhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQ--KF--MPEMMDKVRSLR--NRYPSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq--~~--~~~~~~ki~~l~--~~~~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      ++++.....+ + .++|.|.+-..+-|-. |.  .|  .+...+.+..-.  ....++|+.+.|||. ...+......||
T Consensus       111 ~s~~~A~~a~-~-~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA  188 (320)
T cd04743         111 PSPGLLKQFL-E-NGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAA  188 (320)
T ss_pred             CCHHHHHHHH-H-cCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCC
Confidence            4444444444 2 6899998887777532 31  11  122222221100  011269999999994 555667777877


Q ss_pred             --------CEEEEcccc-cCCCC
Q 033625           83 --------NCIVAGSSV-FGAPE   96 (115)
Q Consensus        83 --------d~iv~Gsai-f~~~d   96 (115)
                              +.+.+|+.. +..+.
T Consensus       189 ~~~~~Ga~~GV~mGTrFl~t~Es  211 (320)
T cd04743         189 PLAERGAKVGVLMGTAYLFTEEA  211 (320)
T ss_pred             cccccccccEEEEccHHhcchhh
Confidence                    799999884 44443

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=88.95  E-value=1  Score=33.42  Aligned_cols=56  Identities=25%  Similarity=0.447  Sum_probs=38.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|||=   ...||.+..-   +.+.++.+++.. .+++|-+.|||+ .+....+.++|++.+
T Consensus       144 aGADfvK---TsTGf~~~ga---t~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ri  201 (211)
T TIGR00126       144 AGADFVK---TSTGFGAGGA---TVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRI  201 (211)
T ss_pred             hCCCEEE---eCCCCCCCCC---CHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence            5899985   5567754333   334444444432 369999999998 666778899999876

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional

Probab=88.88  E-value=7.4  Score=28.46  Aligned_cols=73  Identities=10%  Similarity=0.054  Sum_probs=46.5

Q ss_pred             CCCEEEEEeee---CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhH-HHHHHcCCCEEEEcccccCCCCHHH
Q 033625           25 PVEMVLVMTVE---PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTI-AEAASAGANCIVAGSSVFGAPEPAH   99 (115)
Q Consensus        25 ~vD~vlvm~v~---pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni-~~l~~~Gad~iv~Gsaif~~~d~~~   99 (115)
                      ..|.+++.-..   ||.       ..++-++++++.+|++++.+--+-. ...+ ..+.++||+.+     |.+..++.+
T Consensus        37 ~pd~vl~dl~d~~mp~~-------~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gy-----l~K~~~~~e  104 (207)
T PRK11475         37 SFSAVIFSLSAMRSERR-------EGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGV-----LSKASTLEI  104 (207)
T ss_pred             CCCEEEeeccccCCCCC-------CHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEE-----EecCCCHHH
Confidence            56888743333   543       3567788888888888877665433 4333 34557999987     445566666


Q ss_pred             HHHHHHHHHH
Q 033625          100 VISLMRKSVE  109 (115)
Q Consensus       100 ~~~~l~~~~~  109 (115)
                      -+..++..+.
T Consensus       105 L~~aI~~v~~  114 (207)
T PRK11475        105 LQQELFLSLN  114 (207)
T ss_pred             HHHHHHHHHC
Confidence            6666666544

>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria

Probab=88.87  E-value=4.2  Score=33.21  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=55.3

Q ss_pred             CCCCEEEEEeeeCCCCCc-ccchhH-HHHHHHHHhh----CCCCcEEEEcCCChhhHHHH-HHcC-CCEEEE-cccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQ-KFMPEM-MDKVRSLRNR----YPSLDIEVDGGLGPSTIAEA-ASAG-ANCIVA-GSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq-~~~~~~-~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l-~~~G-ad~iv~-Gsaif~~   94 (115)
                      .++|.+.+    |++.|. .+..+. ..-.+.+++-    .+..-=+..||+++..++.+ ...| .|++.. |.+|+..
T Consensus       293 aGaD~~~~----~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gH  368 (406)
T cd08207         293 AGVDHLHV----NGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAH  368 (406)
T ss_pred             cCCCcccc----CCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEecCCceecC
Confidence            58898854    444443 232222 2223333331    12234578999999999975 7788 688877 7889986


Q ss_pred             -CCHHHHHHHHHHHHHHH
Q 033625           95 -PEPAHVISLMRKSVEDA  111 (115)
Q Consensus        95 -~d~~~~~~~l~~~~~~~  111 (115)
                       +.+++-++.+|+.++.+
T Consensus       369 P~G~~aGa~A~rqA~ea~  386 (406)
T cd08207         369 PDGPAAGVRSLRQAWEAA  386 (406)
T ss_pred             CCCchhHHHHHHHHHHHH
Confidence             46888899999887754

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=88.61  E-value=3.3  Score=31.47  Aligned_cols=84  Identities=15%  Similarity=0.224  Sum_probs=56.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCH----
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP----   97 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~----   97 (115)
                      .++|.+++-+.... ++.-|.....+.+.+.-+.  ..++.+...|.++.+.++.|...++|++=+=+++....|-    
T Consensus       143 aG~~gvMlDTa~Kd-g~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~  221 (235)
T PF04476_consen  143 AGFDGVMLDTADKD-GGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGR  221 (235)
T ss_pred             cCCCEEEEecccCC-CCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhcCCCEEEechhhCCCCCcCccc
Confidence            47899988777654 2333333333333333222  1368899999999999999999999999888888765321    


Q ss_pred             --HHHHHHHHHHH
Q 033625           98 --AHVISLMRKSV  108 (115)
Q Consensus        98 --~~~~~~l~~~~  108 (115)
                        .+.+++|++.+
T Consensus       222 id~~~V~~lr~~~  234 (235)
T PF04476_consen  222 IDPELVAALRALM  234 (235)
T ss_pred             cCHHHHHHHHHhc
Confidence              35666676654

>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C

Probab=88.43  E-value=0.76  Score=35.25  Aligned_cols=55  Identities=22%  Similarity=0.410  Sum_probs=35.5

Q ss_pred             HHHHHHHHhhCCCCcEEEE--------cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           48 MDKVRSLRNRYPSLDIEVD--------GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~~d--------GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      .+.|.+|++.+ ++.+++.        =||++++..+|.++|+|++-+|--+|...+..+.+.+
T Consensus        16 ~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~   78 (253)
T PF13277_consen   16 KEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDK   78 (253)
T ss_dssp             HHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH
T ss_pred             HHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhc
Confidence            34466666653 4554443        2799999999999999999999999998887766655

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=88.26  E-value=4.9  Score=32.30  Aligned_cols=71  Identities=13%  Similarity=0.136  Sum_probs=40.8

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEee--eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTV--EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v--~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ..+..+.++ + .++|+|.+-..  ...|.+..-.   ...+.++.+.. ++|+.+=+-.+.+....+.++|||++.+|
T Consensus       143 ~~e~a~~l~-e-aGvd~I~vhgrt~~~~h~~~~~~---~~~i~~~ik~~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG  215 (368)
T PRK08649        143 AQELAPTVV-E-AGVDLFVIQGTVVSAEHVSKEGE---PLNLKEFIYEL-DVPVIVGGCVTYTTALHLMRTGAAGVLVG  215 (368)
T ss_pred             HHHHHHHHH-H-CCCCEEEEeccchhhhccCCcCC---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence            344455544 2 58999964221  1222222111   12233333332 68887733456788888999999999998

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=88.17  E-value=2  Score=30.58  Aligned_cols=77  Identities=25%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             ceEEEecCCCCH---HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh---hHH
Q 033625            2 RPGVALKPGTSV---EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS---TIA   75 (115)
Q Consensus         2 k~Glal~p~t~~---~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~---ni~   75 (115)
                      +.=+||...++-   +.++.+.   +.+|++=+     |...  +....++-++++++..+++++.+++=+...   .++
T Consensus         2 ~~~~a~d~~~~~~~~~~~~~l~---~~i~~iei-----g~~~--~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~   71 (202)
T cd04726           2 LLQVALDLLDLEEALELAKKVP---DGVDIIEA-----GTPL--IKSEGMEAVRALREAFPDKIIVADLKTADAGALEAE   71 (202)
T ss_pred             ceEEEEcCCCHHHHHHHHHHhh---hcCCEEEc-----CCHH--HHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHH
Confidence            445677644444   3333333   34666533     3211  234456678888877667777766554432   357


Q ss_pred             HHHHcCCCEEEEc
Q 033625           76 EAASAGANCIVAG   88 (115)
Q Consensus        76 ~l~~~Gad~iv~G   88 (115)
                      .+.++|+|++++-
T Consensus        72 ~~~~aGad~i~~h   84 (202)
T cd04726          72 MAFKAGADIVTVL   84 (202)
T ss_pred             HHHhcCCCEEEEE
Confidence            7899999999764

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR00419 tim triosephosphate isomerase

Probab=88.05  E-value=1.4  Score=32.58  Aligned_cols=64  Identities=25%  Similarity=0.278  Sum_probs=44.0

Q ss_pred             EEeeeCCC---CCcccchhHHHHHHHHH----hhCCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCC
Q 033625           31 VMTVEPGF---GGQKFMPEMMDKVRSLR----NRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGA   94 (115)
Q Consensus        31 vm~v~pG~---~gq~~~~~~~~ki~~l~----~~~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~   94 (115)
                      +++-+|-.   +|..-.++-.+.+.+.-    +..++++|.-=|+|+++|..++ .+.++|++-+|++..++
T Consensus       133 vIAYEPvWAIGtG~~as~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a  204 (205)
T TIGR00419       133 VVAVEPPELIGTGIPVSPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA  204 (205)
T ss_pred             EEEECCHHHhCCCCCCCHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence            45666721   45554444444433332    2234689999999999999986 67889999999987653

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase

Probab=88.04  E-value=2.8  Score=35.52  Aligned_cols=86  Identities=13%  Similarity=0.095  Sum_probs=64.7

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeee--------------CCCCCcccchhHHHHHHHHHhh--CCCCcEEE
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVE--------------PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV   65 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~--------------pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~   65 (115)
                      .+|+.+-...-+..++.++   ..+|++.+.+-+              -|+-++.+.|..+..|+++.+.  ..++|+.+
T Consensus       424 ~vg~mIEtpaav~~~d~ia---~~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~v  500 (565)
T TIGR01417       424 EVGVMIEIPSAALIADHLA---KEVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGM  500 (565)
T ss_pred             EEEEEEcCHHHHHhHHHHH---hhCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence            3566666666667888888   789999887632              3445678888888888877543  24688888


Q ss_pred             Ec--CCChhhHHHHHHcCCCEEEEccc
Q 033625           66 DG--GLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        66 dG--GI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      -|  .-+++-++.+...|.+.+.+++.
T Consensus       501 CGe~a~~p~~~~~l~~~G~~~lsv~~~  527 (565)
T TIGR01417       501 CGEMAGDERAIPLLLGLGLRELSMSAS  527 (565)
T ss_pred             eCCcCCCHHHHHHHHHCCCCEEEEChH
Confidence            66  34789999999999999999954

This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.

>PRK06464 phosphoenolpyruvate synthase; Validated

Probab=88.03  E-value=2.3  Score=37.43  Aligned_cols=85  Identities=6%  Similarity=-0.072  Sum_probs=60.7

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCC--------------CCCcccchhHHHHHHHHHhh--CCCCcEEEE
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG--------------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVD   66 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG--------------~~gq~~~~~~~~ki~~l~~~--~~~~~i~~d   66 (115)
                      +|+.+-...-+..+++++   ..+|++.|.+-+-.              .-++...|..++.|+++.+.  ..++++.+.
T Consensus       672 vg~MIEtp~av~~~deIa---~~vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgic  748 (795)
T PRK06464        672 VIMMCEIPSNALLAEEFL---EYFDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGIC  748 (795)
T ss_pred             EEEEEcCHHHHHHHHHHH---HhCCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence            556665555667888888   77999988764322              12455567777777766443  236888887


Q ss_pred             c---CCChhhHHHHHHcCCCEEEEccc
Q 033625           67 G---GLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        67 G---GI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      |   |-+++.++.+.+.|++.+.+++.
T Consensus       749 ge~a~~~p~~~~~l~~~G~~~ls~~~d  775 (795)
T PRK06464        749 GQAPSDHPDFAEWLVEEGIDSISLNPD  775 (795)
T ss_pred             CCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence            6   43489999999999999999864

>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll

Probab=87.89  E-value=2.4  Score=33.57  Aligned_cols=72  Identities=25%  Similarity=0.460  Sum_probs=49.6

Q ss_pred             ecCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCC
Q 033625            7 LKPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLG   70 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~   70 (115)
                      ++|...-|.+.+...| ..++|+|+   |.|+..       -++-|+++++..|++|+.+               -|=++
T Consensus       219 mdp~n~~eAlre~~~D~~EGAD~lM---VKPal~-------YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iD  288 (320)
T cd04824         219 LPPGARGLALRAVERDVSEGADMIM---VKPGTP-------YLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFD  288 (320)
T ss_pred             CCCcCHHHHHHHHHhhHHhCCCEEE---EcCCch-------HHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCc
Confidence            4566666777666555 25899997   788743       4566888888877788764               23344


Q ss_pred             -----hhhHHHHHHcCCCEEEEc
Q 033625           71 -----PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        71 -----~~ni~~l~~~Gad~iv~G   88 (115)
                           .|.+-.++.+|||+|+.=
T Consensus       289 e~~~~~Esl~~ikRAGAd~IiTY  311 (320)
T cd04824         289 LKRAVLEAMTGFRRAGADIIITY  311 (320)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEee
Confidence                 455666889999998754

This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional

Probab=87.87  E-value=9.5  Score=29.32  Aligned_cols=78  Identities=13%  Similarity=0.239  Sum_probs=52.1

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      -++.+++++.. +++|.+.+.+-+    -|+.+|...|+..+.++++.+..  .+++..+- .-+++....+.+.|++.+
T Consensus       157 a~~n~~~I~~~-~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~-~~~~~~a~~~~~~G~~~v  234 (267)
T PRK10128        157 ALDNLDEILDV-EGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL-AVDPDMAQKCLAWGANFV  234 (267)
T ss_pred             HHHhHHHHhCC-CCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc-CCCHHHHHHHHHcCCcEE
Confidence            34778887743 789999987642    35566655565555555553321  24555432 347899999999999999


Q ss_pred             EEcccc
Q 033625           86 VAGSSV   91 (115)
Q Consensus        86 v~Gsai   91 (115)
                      ++|+..
T Consensus       235 ~~g~D~  240 (267)
T PRK10128        235 AVGVDT  240 (267)
T ss_pred             EEChHH
Confidence            999753

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=87.69  E-value=3.9  Score=30.21  Aligned_cols=47  Identities=23%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             CCcEEEEcCCChhhHHHHHHcCCCEEEEccccc----CCCCHHHHHHHHHH
Q 033625           60 SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF----GAPEPAHVISLMRK  106 (115)
Q Consensus        60 ~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif----~~~d~~~~~~~l~~  106 (115)
                      +..|.+.|=-|++.+.+...+|+|.+-+.-.++    ..+-..+.++.+.+
T Consensus       157 ~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~  207 (211)
T cd00956         157 DTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE  207 (211)
T ss_pred             CceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence            577999999999999999999999999996655    44445666666554

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=87.59  E-value=4.4  Score=35.32  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCH
Q 033625           52 RSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEP   97 (115)
Q Consensus        52 ~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~   97 (115)
                      +++++.. ++|+.+-|+| +++.+.++++.| +|.+.+|+.+...++.
T Consensus       680 ~~ik~~~-~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~  726 (765)
T PRK08255        680 DRIRNEA-GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAW  726 (765)
T ss_pred             HHHHHHc-CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence            4555543 6899999999 678899887755 9999999999988876

>PRK08508 biotin synthase; Provisional

Probab=87.43  E-value=2.5  Score=32.36  Aligned_cols=81  Identities=12%  Similarity=0.154  Sum_probs=50.8

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc----ccccC----CC
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG----SSVFG----AP   95 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G----saif~----~~   95 (115)
                      ++.-+.+....+++.. ...+...+-++.+++..+++.+. -.|=.+.+.+..|+++|+|.+-.+    ..+|.    ..
T Consensus        56 g~~~~~lv~sg~~~~~-~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~  134 (279)
T PRK08508         56 GALGFCLVTSGRGLDD-KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTH  134 (279)
T ss_pred             CCCEEEEEeccCCCCc-ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCC
Confidence            5666655443444332 23345555666777666677654 568889999999999999999865    22453    23


Q ss_pred             CHHHHHHHHHH
Q 033625           96 EPAHVISLMRK  106 (115)
Q Consensus        96 d~~~~~~~l~~  106 (115)
                      ++.+.++.++.
T Consensus       135 ~~~~~l~~i~~  145 (279)
T PRK08508        135 TWEERFQTCEN  145 (279)
T ss_pred             CHHHHHHHHHH
Confidence            45555555443

>PRK02227 hypothetical protein; Provisional

Probab=87.39  E-value=4.7  Score=30.72  Aligned_cols=94  Identities=12%  Similarity=0.161  Sum_probs=60.1

Q ss_pred             hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc
Q 033625           15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .+-++..+ .++|.+|+-+-... ++.-|.....+.+++..+.  ..+......|.++.+.++.|...++|++=+=+++.
T Consensus       135 ~l~~~a~~-aGf~g~MlDTa~Kd-g~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L~~l~pD~lGfRgavC  212 (238)
T PRK02227        135 SLPAIAAD-AGFDGAMLDTAIKD-GKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPALKRLGPDILGVRGAVC  212 (238)
T ss_pred             HHHHHHHH-cCCCEEEEecccCC-CcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHHHhcCCCEEEechhcc
Confidence            34444433 57888887665543 2233333333333333222  12688999999999999999999999998878888


Q ss_pred             CCCCH-----HHHHHHHHHHHHH
Q 033625           93 GAPEP-----AHVISLMRKSVED  110 (115)
Q Consensus        93 ~~~d~-----~~~~~~l~~~~~~  110 (115)
                      ...|-     .+.+.+|++.+..
T Consensus       213 ~g~dR~~~id~~~V~~~~~~l~~  235 (238)
T PRK02227        213 GGGDRTGRIDPELVAELREALRA  235 (238)
T ss_pred             CCCCcccccCHHHHHHHHHHhhc
Confidence            54421     3566666666543

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=87.25  E-value=7  Score=31.34  Aligned_cols=82  Identities=17%  Similarity=0.217  Sum_probs=59.1

Q ss_pred             CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCc-ccc--hhHHHHHHHHHhhCCCCcEEEEcCC---------------
Q 033625           10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQ-KFM--PEMMDKVRSLRNRYPSLDIEVDGGL---------------   69 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq-~~~--~~~~~ki~~l~~~~~~~~i~~dGGI---------------   69 (115)
                      -|..+...++++. -++|++=  +.++|--|.+. +..  .--+++++++++..+++|++.=||=               
T Consensus       172 ~T~PeeA~~Fv~~-TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~  250 (347)
T PRK09196        172 LTDPEEAADFVKK-TQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGG  250 (347)
T ss_pred             CCCHHHHHHHHHH-hCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcC
Confidence            5778888888854 4789763  23344444431 111  1356788888887667999999976               


Q ss_pred             --------ChhhHHHHHHcCCCEEEEccccc
Q 033625           70 --------GPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        70 --------~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                              ..+.+++..+.|+.-|=+++.+.
T Consensus       251 ~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~  281 (347)
T PRK09196        251 DMPETYGVPVEEIQEGIKHGVRKVNIDTDLR  281 (347)
T ss_pred             CccccCCCCHHHHHHHHHCCCceEEeChHHH
Confidence                    66999999999999999998774

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=86.84  E-value=10  Score=29.46  Aligned_cols=42  Identities=19%  Similarity=0.295  Sum_probs=27.9

Q ss_pred             HHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcccccC
Q 033625           52 RSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        52 ~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      ++++..+|+.|+.+-.+-+. -++.+|.+.|++.++.|..+++
T Consensus       203 ~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~  245 (285)
T TIGR02320       203 RRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR  245 (285)
T ss_pred             HHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence            33333345667765443222 2688999999999999987764

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=86.30  E-value=3.3  Score=34.62  Aligned_cols=88  Identities=19%  Similarity=0.272  Sum_probs=56.8

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc---------hhHHHH-HHHHHhh--CCCCcEEEEcCC
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDK-VRSLRNR--YPSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~---------~~~~~k-i~~l~~~--~~~~~i~~dGGI   69 (115)
                      ++++=|....+++.+...... ..+|+|+|-.-.-|.+-.++.         +..+.. -+.|+..  +..+.+.+|||+
T Consensus       305 ~I~VKlva~~~v~~iaagvak-A~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl  383 (485)
T COG0069         305 KISVKLVAEHGVGTIAAGVAK-AGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGL  383 (485)
T ss_pred             eEEEEEecccchHHHHhhhhh-ccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCc
Confidence            466777788888888875533 589999886555554322211         112222 2223332  346889999998


Q ss_pred             C-hhhHHHHHHcCCCEEEEccc
Q 033625           70 G-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        70 ~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      . ...+...+..|||.|-.|++
T Consensus       384 ~Tg~DVaka~aLGAd~v~~gTa  405 (485)
T COG0069         384 RTGADVAKAAALGADAVGFGTA  405 (485)
T ss_pred             cCHHHHHHHHHhCcchhhhchH
Confidence            5 56777788999999987754

>PLN02428 lipoic acid synthase

Probab=86.18  E-value=5.2  Score=32.05  Aligned_cols=69  Identities=17%  Similarity=0.248  Sum_probs=45.0

Q ss_pred             HhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhhCCCCcEEEE--cC-CChhhHHHHHHcCCCEEE
Q 033625           14 EEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD--GG-LGPSTIAEAASAGANCIV   86 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d--GG-I~~~ni~~l~~~Gad~iv   86 (115)
                      +..+.+. + .+++++.+.++.    |.. |   .....+.++++++..|++.+.+-  +. .+.+.+..+.++|.|.+-
T Consensus       137 ~vA~~v~-~-~Glk~vvltSg~rddl~D~-g---a~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~  210 (349)
T PLN02428        137 NVAEAIA-S-WGVDYVVLTSVDRDDLPDG-G---SGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFA  210 (349)
T ss_pred             HHHHHHH-H-cCCCEEEEEEcCCCCCCcc-c---HHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEc
Confidence            4444444 1 378999888874    321 1   12344456777777777666663  33 389999999999999976


Q ss_pred             Ec
Q 033625           87 AG   88 (115)
Q Consensus        87 ~G   88 (115)
                      .+
T Consensus       211 hn  212 (349)
T PLN02428        211 HN  212 (349)
T ss_pred             cC
Confidence            55

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=86.18  E-value=3.9  Score=30.55  Aligned_cols=59  Identities=19%  Similarity=0.364  Sum_probs=42.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      .++|||-   ...||....   .+++-++.+++.. .+++|-+.|||+ .+....+.++||+.+=..
T Consensus       148 agadfIK---TsTG~~~~g---at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS  208 (221)
T PRK00507        148 AGADFVK---TSTGFSTGG---ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS  208 (221)
T ss_pred             hCCCEEE---cCCCCCCCC---CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence            5799774   677874222   4455566666553 469999999995 678889999999988443

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=86.14  E-value=8.5  Score=30.09  Aligned_cols=87  Identities=14%  Similarity=0.226  Sum_probs=49.0

Q ss_pred             EEEecCCCCHH--hHHHhHhCCCCCCEEEEEe----eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE--cCCC--hhh
Q 033625            4 GVALKPGTSVE--EVYPLVEGANPVEMVLVMT----VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD--GGLG--PST   73 (115)
Q Consensus         4 Glal~p~t~~~--~~~~~~~~~~~vD~vlvm~----v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d--GGI~--~~n   73 (115)
                      .+-++..++.+  .+...+++ .++|++-+=.    ..+++.|........+.++++++.. ++|+.+=  ++++  .+.
T Consensus       105 i~sI~g~~~~e~~~~a~~~~~-agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~  182 (334)
T PRK07565        105 IASLNGSSAGGWVDYARQIEQ-AGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANM  182 (334)
T ss_pred             EEEeccCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHH
Confidence            44555556554  23333333 3689998722    2233333333233456677777653 5777765  3332  355


Q ss_pred             HHHHHHcCCCEEEEccccc
Q 033625           74 IAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        74 i~~l~~~Gad~iv~Gsaif   92 (115)
                      .+.+.++|+|.+++.....
T Consensus       183 a~~l~~~G~dgI~~~n~~~  201 (334)
T PRK07565        183 AKRLDAAGADGLVLFNRFY  201 (334)
T ss_pred             HHHHHHcCCCeEEEECCcC
Confidence            5667899999998875443

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=86.10  E-value=7  Score=29.83  Aligned_cols=76  Identities=25%  Similarity=0.386  Sum_probs=50.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEe--eeCCCCCcccc-------------hhHHHHHHHHHhhCCCCcEEEEcCCCh----
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFM-------------PEMMDKVRSLRNRYPSLDIEVDGGLGP----   71 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~-------------~~~~~ki~~l~~~~~~~~i~~dGGI~~----   71 (115)
                      |.++.+..+.+  .++|+|=+.-  .+|=.+|--.+             ...++.++++|+..+++|+.+-+=.|+    
T Consensus        27 ~~~~~~~~l~~--~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~  104 (258)
T PRK13111         27 TSLEIIKALVE--AGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY  104 (258)
T ss_pred             HHHHHHHHHHH--CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc
Confidence            44455555552  5899987643  23444553222             245777788875556889888884443    


Q ss_pred             ---hhHHHHHHcCCCEEEEc
Q 033625           72 ---STIAEAASAGANCIVAG   88 (115)
Q Consensus        72 ---~ni~~l~~~Gad~iv~G   88 (115)
                         +-+..+.++|+|++++-
T Consensus       105 G~e~f~~~~~~aGvdGviip  124 (258)
T PRK13111        105 GVERFAADAAEAGVDGLIIP  124 (258)
T ss_pred             CHHHHHHHHHHcCCcEEEEC
Confidence               45788999999999885

>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family

Probab=86.01  E-value=6.6  Score=28.51  Aligned_cols=73  Identities=19%  Similarity=0.088  Sum_probs=45.6

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      -|.+++|.+.+.+.+.+ ..+|+|.+-...+-     -.+...+-++++++..  ++++|.+=|..-  |-....+.|||
T Consensus       117 ~LG~~vp~e~~v~~~~~-~~pd~v~lS~~~~~-----~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad  188 (197)
T TIGR02370       117 DLGRDVPIDTVVEKVKK-EKPLMLTGSALMTT-----TMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGAD  188 (197)
T ss_pred             ECCCCCCHHHHHHHHHH-cCCCEEEEcccccc-----CHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCc
Confidence            36789999988888855 68999987544332     1233445567777763  345555554332  32344677999


Q ss_pred             EEE
Q 033625           84 CIV   86 (115)
Q Consensus        84 ~iv   86 (115)
                      ...
T Consensus       189 ~~~  191 (197)
T TIGR02370       189 VYG  191 (197)
T ss_pred             EEe
Confidence            874

This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=85.87  E-value=9.1  Score=30.85  Aligned_cols=77  Identities=12%  Similarity=0.151  Sum_probs=44.6

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEe--eeCCC-CCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMT--VEPGF-GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~--v~pG~-~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga   82 (115)
                      -++|....+..+.++ + .++|.|.+-+  +...| ++.. .   ...+.++.+.. ++|+.+-+-.+.+....+.++|+
T Consensus       138 Rl~~~~~~e~a~~l~-e-AGad~I~ihgrt~~q~~~sg~~-~---p~~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGa  210 (369)
T TIGR01304       138 RVSPQNAREIAPIVV-K-AGADLLVIQGTLVSAEHVSTSG-E---PLNLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGA  210 (369)
T ss_pred             ecCCcCHHHHHHHHH-H-CCCCEEEEeccchhhhccCCCC-C---HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCC
Confidence            334444444445544 3 5899986532  11222 2211 1   22345554443 68888744557788888999999


Q ss_pred             CEEEEcc
Q 033625           83 NCIVAGS   89 (115)
Q Consensus        83 d~iv~Gs   89 (115)
                      |.++.|.
T Consensus       211 DgV~~G~  217 (369)
T TIGR01304       211 AGVIVGP  217 (369)
T ss_pred             CEEEECC
Confidence            9998773

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=85.65  E-value=5.8  Score=31.72  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +.+.|+++++.. +.|+.+=|-.+++....+.++|+|.|++.
T Consensus       209 ~~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vs  249 (351)
T cd04737         209 SPADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVS  249 (351)
T ss_pred             CHHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence            556778888764 68999999889999999999999999983

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR00045 glycerate kinase

Probab=85.55  E-value=15  Score=29.78  Aligned_cols=87  Identities=11%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             hHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           15 EVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        15 ~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .+++.+   ...|+|+  +-+--++.|.+.-.....+.++.+.+ ++|+.+..|--..+..++.+.|.+.+...  .=..
T Consensus       276 ~l~~~l---~~ADlVI--TGEG~~D~Qtl~GK~p~~Va~~A~~~-~vPviai~G~v~~~~~~~~~~g~~a~~~i--~~~~  347 (375)
T TIGR00045       276 DLEQKI---KDADLVI--TGEGRLDRQSLMGKAPVGVAKRAKKY-GVPVIAIAGSLGDGVDVLPQHGIDAAFSI--LPSP  347 (375)
T ss_pred             CHHHHh---cCCCEEE--ECCCcccccccCCchHHHHHHHHHHh-CCeEEEEecccCCChHHHHhcCccEEEEc--CCCC
Confidence            456677   7789664  45555788888766666666665553 68877777766677788888887654321  1123


Q ss_pred             CCHHHHHHHHHHHHH
Q 033625           95 PEPAHVISLMRKSVE  109 (115)
Q Consensus        95 ~d~~~~~~~l~~~~~  109 (115)
                      .+..+++++-.+.++
T Consensus       348 ~~l~~a~~~~~~~l~  362 (375)
T TIGR00045       348 MPLEDALQNASTNLE  362 (375)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            355555544333333

The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.

>PRK01362 putative translaldolase; Provisional

Probab=85.51  E-value=7.4  Score=28.97  Aligned_cols=83  Identities=18%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc----CCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF----GAP   95 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif----~~~   95 (115)
                      .++|||-..   -|--. +...+.++.++++++.    ..+..|.+..=-+.+++.++..+|+|.+-+.-.+|    +.+
T Consensus       121 aGa~yispy---vgRi~-d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p  196 (214)
T PRK01362        121 AGATYVSPF---VGRLD-DIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHP  196 (214)
T ss_pred             cCCcEEEee---cchHh-hcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCC
Confidence            688887432   22110 1112244444444443    33577888888889999998999999998886655    455


Q ss_pred             CHHHHHHHHHHHHHH
Q 033625           96 EPAHVISLMRKSVED  110 (115)
Q Consensus        96 d~~~~~~~l~~~~~~  110 (115)
                      -..+.++.+.+-+++
T Consensus       197 ~t~~~~~~F~~dw~~  211 (214)
T PRK01362        197 LTDKGLEKFLADWEK  211 (214)
T ss_pred             chHHHHHHHHHHHHH
Confidence            556777777665443

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=85.48  E-value=12  Score=30.12  Aligned_cols=82  Identities=16%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCC--ccc-chhHHHHHHHHHhhCCCCcEEEEcCCC--------------
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGG--QKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG--------------   70 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~g--q~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~--------------   70 (115)
                      -|..+..+++++. -++|.+=+  .++|--|.+  .+- ..--+++|+++++..+++|++.=||=.              
T Consensus       170 ~T~PeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~  248 (347)
T TIGR01521       170 LTDPEEAADFVKK-TKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGG  248 (347)
T ss_pred             CCCHHHHHHHHHH-HCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcc
Confidence            5777888888854 47887632  334444443  111 013577888888776579999888754              


Q ss_pred             ---------hhhHHHHHHcCCCEEEEccccc
Q 033625           71 ---------PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        71 ---------~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                               .+.++...+.|+.-|=+++.+.
T Consensus       249 ~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~  279 (347)
T TIGR01521       249 EIKETYGVPVEEIVEGIKYGVRKVNIDTDLR  279 (347)
T ss_pred             cccccCCCCHHHHHHHHHCCCeeEEeChHHH
Confidence                     7899999999999999998875

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=85.42  E-value=2.6  Score=32.27  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=23.5

Q ss_pred             ChhhHHHH-HHcCCC-EEEEcccccCCCCHHHHHH
Q 033625           70 GPSTIAEA-ASAGAN-CIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        70 ~~~ni~~l-~~~Gad-~iv~Gsaif~~~d~~~~~~  102 (115)
                      +.+....+ -..|+| .+++|+.|..+.||.++++
T Consensus       224 ~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~  258 (261)
T TIGR02127       224 EAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV  258 (261)
T ss_pred             CHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence            45555553 346888 8999999999999876643

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase

Probab=85.41  E-value=14  Score=27.98  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=49.7

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      -++.+++++. ++++|.+.+.+-+    -|..++...++....+.++...  ..+++..+-. -+++..+.+.+.|++.+
T Consensus       150 av~n~~eI~a-v~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~-~~~~~~~~~~~~G~~~~  227 (249)
T TIGR03239       150 GVDNVDEIAA-VDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILA-PVEADARRYLEWGATFV  227 (249)
T ss_pred             HHHhHHHHhC-CCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcC-CCHHHHHHHHHcCCCEE
Confidence            3467888773 3679999987532    2444444445555444444221  1256665433 47889999999999999


Q ss_pred             EEccc
Q 033625           86 VAGSS   90 (115)
Q Consensus        86 v~Gsa   90 (115)
                      ++|+.
T Consensus       228 ~~~~D  232 (249)
T TIGR03239       228 AVGSD  232 (249)
T ss_pred             EEhHH
Confidence            99964

In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=85.38  E-value=9.4  Score=27.31  Aligned_cols=65  Identities=25%  Similarity=0.382  Sum_probs=43.0

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.+++  .+++.|.+-.-.+         ...+-++++++.++++.+.+--=++.+.++.+.++|+|+++++.
T Consensus        20 ~~~~~l~~--~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~   84 (190)
T cd00452          20 ALAEALIE--GGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG   84 (190)
T ss_pred             HHHHHHHH--CCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence            34444441  4799887643322         25556788887776554443333459999999999999998763

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=85.20  E-value=8.9  Score=28.28  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=44.1

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .++|+|=+..-.|...- +..++..+.++++++..++.++.+..--..+.+..+.++|++.+-+.
T Consensus        31 ~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~   94 (265)
T cd03174          31 AGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIF   94 (265)
T ss_pred             cCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEE
Confidence            36888876554332111 34567788889888876667766554434889999999999987665

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form

Probab=85.17  E-value=7.1  Score=29.75  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             CCCCEEEEEeeeCCCCC-----cccchhHHHHHHHHHhhCCCCcEEEEc----CCChhh----HH---HHHHcCCCEEEE
Q 033625           24 NPVEMVLVMTVEPGFGG-----QKFMPEMMDKVRSLRNRYPSLDIEVDG----GLGPST----IA---EAASAGANCIVA   87 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~g-----q~~~~~~~~ki~~l~~~~~~~~i~~dG----GI~~~n----i~---~l~~~Gad~iv~   87 (115)
                      .+++-|++++-+|--.+     ..|. .+.+.|+.+++.+.++.|.+.|    -.+..+    +.   .=.++||| +++
T Consensus        85 ~Gi~nvL~l~GD~~~~~~~~~~~~f~-~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~-f~i  162 (272)
T TIGR00676        85 LGIRHILALRGDPPKGEGTPTPGGFN-YASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD-YAI  162 (272)
T ss_pred             CCCCEEEEeCCCCCCCCCCCCCCCCC-CHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC-eEe
Confidence            47999998888765333     3344 6888888888876666666655    111222    22   22479999 667


Q ss_pred             cccccCCCCHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~  105 (115)
                      .-.+|..+...+..+.++
T Consensus       163 TQ~~fd~~~~~~~~~~~~  180 (272)
T TIGR00676       163 TQLFFDNDDYYRFVDRCR  180 (272)
T ss_pred             eccccCHHHHHHHHHHHH
Confidence            778887655444444444

This protein is an FAD-containing flavoprotein.

>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5

Probab=85.07  E-value=1.9  Score=32.72  Aligned_cols=69  Identities=20%  Similarity=0.372  Sum_probs=45.4

Q ss_pred             EEEeeeCCC---CCcccchhHHHHH-HHHHhh---------CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDKV-RSLRNR---------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~ki-~~l~~~---------~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~   95 (115)
                      ++++-+|-.   +|+...++-.+.+ +.+|+.         ..+++|.-=|+++++|+.++ ...++|++-+|++-.+.+
T Consensus       159 ~iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~  238 (244)
T PF00121_consen  159 IIIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAE  238 (244)
T ss_dssp             EEEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTH
T ss_pred             eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhccc
Confidence            455677732   4665544444432 223332         23689999999999999987 578999999999987765


Q ss_pred             CHH
Q 033625           96 EPA   98 (115)
Q Consensus        96 d~~   98 (115)
                      ++.
T Consensus       239 ~F~  241 (244)
T PF00121_consen  239 SFL  241 (244)
T ss_dssp             HHH
T ss_pred             chh
Confidence            543

3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=85.03  E-value=2.8  Score=31.05  Aligned_cols=44  Identities=34%  Similarity=0.499  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +..++-|+++++.++++.+-+=.=.|.+.++...++||+++|.-
T Consensus        44 ~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP   87 (204)
T TIGR01182        44 PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSP   87 (204)
T ss_pred             ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECC
Confidence            45777788888888776666655578999999999999998654

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=84.93  E-value=13  Score=28.87  Aligned_cols=78  Identities=15%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~i   85 (115)
                      .|..+...++++. -++|.+=+  .++|--|.+.+   --+++++++++.. ++|++.=||  +..+.++...+.|+.-+
T Consensus       152 ~T~pe~a~~Fv~~-TgvD~LAvaiGt~HG~Y~~p~---l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki  226 (283)
T PRK07998        152 KTEPEKVKDFVER-TGCDMLAVSIGNVHGLEDIPR---IDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKV  226 (283)
T ss_pred             cCCHHHHHHHHHH-hCcCeeehhccccccCCCCCC---cCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEE
Confidence            5778888888844 47886632  23344444422   2357788887764 799999885  78899999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      -+++.+.
T Consensus       227 Ni~Tel~  233 (283)
T PRK07998        227 NIASDLR  233 (283)
T ss_pred             EECHHHH
Confidence            9998875

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=84.79  E-value=15  Score=28.46  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=58.4

Q ss_pred             CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i   85 (115)
                      .|..+..+++++. -++|.+=  +.++|-.|.+.+  .-.+++|+++++.. ++|++.=|  |+..+.++.+.+.|+.-+
T Consensus       154 ~T~pe~a~~Fv~~-TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki  229 (284)
T PRK12857        154 MTDPEEARRFVEE-TGVDALAIAIGTAHGPYKGEP--KLDFDRLAKIKELV-NIPIVLHGSSGVPDEAIRKAISLGVRKV  229 (284)
T ss_pred             cCCHHHHHHHHHH-HCCCEEeeccCccccccCCCC--cCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence            5778888888844 4788764  334565566533  23456677777664 68888887  588999999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      =+++.+.
T Consensus       230 Ni~T~~~  236 (284)
T PRK12857        230 NIDTNIR  236 (284)
T ss_pred             EeCcHHH
Confidence            9998875

>COG3749 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.70  E-value=2.7  Score=30.20  Aligned_cols=77  Identities=23%  Similarity=0.299  Sum_probs=55.3

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC-CcccchhHHHHHHHHHh-hCCCCcEEEEcCCChhhHHHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRN-RYPSLDIEVDGGLGPSTIAEAAS   79 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~~-~~~~~~i~~dGGI~~~ni~~l~~   79 (115)
                      +.|+-|+|+..++.+.+++   +.+..|-|  ..|-|. |..|.     +-.-||+ +.-+=.+-+.|-+=-+.++.+..
T Consensus        54 ~lgV~l~Pddeve~L~~~l---~~lalVAv--~FP~F~DGRgyS-----~A~LLR~RlG~~GelRAVGDVLiDql~~M~R  123 (167)
T COG3749          54 RLGVWLAPDDEVEALAPDL---DRLALVAV--DFPAFRDGRGYS-----KAELLRSRLGFQGELRAVGDVLIDQLPFMLR  123 (167)
T ss_pred             cceeeeCCccchhhhhccc---ccceEEEE--eccceecCccch-----HHHHHhhhccccchhhhhhhHHhhhhHHHHH
Confidence            4799999999999999988   55554432  368774 55543     2233332 22344578889999999999999


Q ss_pred             cCCCEEEEc
Q 033625           80 AGANCIVAG   88 (115)
Q Consensus        80 ~Gad~iv~G   88 (115)
                      +|.|.|.+-
T Consensus       124 cGFDaFav~  132 (167)
T COG3749         124 CGFDAFAVR  132 (167)
T ss_pred             cCCceeeec
Confidence            999999775

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=84.60  E-value=14  Score=29.26  Aligned_cols=82  Identities=21%  Similarity=0.203  Sum_probs=57.0

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcC----------------
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGG----------------   68 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~---~~~~~~~ki~~l~~~~~~~~i~~dGG----------------   68 (115)
                      -|..+...++++. -++|.+=+  .++|--|.+.+   -..--+++|+++++..+++|++.=||                
T Consensus       163 ~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~  241 (321)
T PRK07084        163 YTQPEEVEDFVKK-TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGG  241 (321)
T ss_pred             cCCHHHHHHHHHH-hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcC
Confidence            5777888888843 47887643  33454454310   11245677888877765789987774                


Q ss_pred             -------CChhhHHHHHHcCCCEEEEccccc
Q 033625           69 -------LGPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        69 -------I~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                             +..+.++...+.|+.-|=+++.+.
T Consensus       242 ~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~  272 (321)
T PRK07084        242 KLKDAIGIPEEQLRKAAKSAVCKINIDSDGR  272 (321)
T ss_pred             ccccCCCCCHHHHHHHHHcCCceeccchHHH
Confidence                   467999999999999999988764

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=84.08  E-value=18  Score=28.14  Aligned_cols=81  Identities=17%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANC   84 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~   84 (115)
                      ..|..+..+++++. -++|.+=+  .++|-.|.+.+- +--+++|+++++.. ++|++.=||  +..+.++.+.+.|+.-
T Consensus       156 ~~T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~p~-~Ld~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~K  232 (288)
T TIGR00167       156 LYTDPEEAKEFVKL-TGVDSLAAAIGNVHGVYKGEPK-GLDFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVK  232 (288)
T ss_pred             cCCCHHHHHHHHhc-cCCcEEeeccCccccccCCCCC-ccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeE
Confidence            36788888888854 47998743  334555544221 13566777777764 789998884  7788999999999999


Q ss_pred             EEEccccc
Q 033625           85 IVAGSSVF   92 (115)
Q Consensus        85 iv~Gsaif   92 (115)
                      +=+++.+.
T Consensus       233 iNi~T~l~  240 (288)
T TIGR00167       233 VNIDTELQ  240 (288)
T ss_pred             EEcChHHH
Confidence            99998873

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>TIGR01418 PEP_synth phosphoenolpyruvate synthase

Probab=83.93  E-value=4.2  Score=35.74  Aligned_cols=85  Identities=7%  Similarity=-0.017  Sum_probs=61.5

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCC--------------CCCcccchhHHHHHHHHHhh--CCCCcEEEE
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPG--------------FGGQKFMPEMMDKVRSLRNR--YPSLDIEVD   66 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG--------------~~gq~~~~~~~~ki~~l~~~--~~~~~i~~d   66 (115)
                      +|+.+-...-+..+++++   ..+|++.|.+-+-.              .-++...|..++.|+++.+.  ..++++.+.
T Consensus       665 vg~mIEtp~av~~~d~Ia---~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgic  741 (782)
T TIGR01418       665 VYVMCEVPSNALLADEFA---KEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGIC  741 (782)
T ss_pred             EEEEECcHHHHHHHHHHH---HhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEe
Confidence            555665555667888888   77999988664322              13455667777777776543  246888887


Q ss_pred             cCC---ChhhHHHHHHcCCCEEEEccc
Q 033625           67 GGL---GPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        67 GGI---~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      |-.   +++.++.+.+.|++.+.+++.
T Consensus       742 ge~~~~~p~~~~~l~~~G~~~ls~~~d  768 (782)
T TIGR01418       742 GQAPSDYPEVVEFLVEEGIDSISLNPD  768 (782)
T ss_pred             CCCCCCCHHHHHHHHHcCCCEEEECcc
Confidence            742   799999999999999999864

Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=83.80  E-value=12  Score=26.48  Aligned_cols=93  Identities=19%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--hhhHHHHHHcCCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PSTIAEAASAGAN   83 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~--~~ni~~l~~~Gad   83 (115)
                      ++++....+.++....  .++|+|.+-..+-.|..  ..+..++.++++++.. +.++.++==++  .+.++.+.++|+|
T Consensus         8 ~~d~~~~~~~~~~~~~--~G~~~i~l~~~d~~~~~--~~~~~~~~~~~i~~~~-~~~~~v~l~~~d~~~~~~~~~~~g~d   82 (211)
T cd00429           8 SADFANLGEELKRLEE--AGADWIHIDVMDGHFVP--NLTFGPPVVKALRKHT-DLPLDVHLMVENPERYIEAFAKAGAD   82 (211)
T ss_pred             cCCHHHHHHHHHHHHH--cCCCEEEEecccCCCCC--ccccCHHHHHHHHhhC-CCcEEEEeeeCCHHHHHHHHHHcCCC
Confidence            4455555566777661  36999988433322211  1112335566666554 34443332223  2458888899999


Q ss_pred             EEEEcccccCCCCHHHHHHHHH
Q 033625           84 CIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        84 ~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      ++.+--.-.  +++.+.++.++
T Consensus        83 gv~vh~~~~--~~~~~~~~~~~  102 (211)
T cd00429          83 IITFHAEAT--DHLHRTIQLIK  102 (211)
T ss_pred             EEEECccch--hhHHHHHHHHH
Confidence            985543221  34444444443

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=83.65  E-value=3.3  Score=30.64  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=35.2

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +..++-|+++++.++++.|-+=.=+|.+.++...++||+++|.=
T Consensus        40 p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP   83 (201)
T PRK06015         40 PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP   83 (201)
T ss_pred             ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence            45777788888877776666666678999999999999998754

>COG1891 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.46  E-value=4.3  Score=30.06  Aligned_cols=68  Identities=13%  Similarity=0.168  Sum_probs=45.7

Q ss_pred             CCCCEEEEEeee-CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~-pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .++|..++-+.. -|.+--+|.  ..+.+.+.-..  -.++.....|.++.++++.|.+.|+|++=+-++...
T Consensus       143 ag~DvaMvDTaiKDGkslFdfm--~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~  213 (235)
T COG1891         143 AGADVAMVDTAIKDGKSLFDFM--DEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEIGPDIVGVRGAACE  213 (235)
T ss_pred             cCCCEEEEecccccchhHHhhh--cHHHHHHHHHHHHHcchHHHhccccccccchHHHHhCCCeeeecchhcc
Confidence            578998876643 333322332  23334443221  126889999999999999999999999877677665

>PRK08444 hypothetical protein; Provisional

Probab=83.44  E-value=4.9  Score=32.04  Aligned_cols=65  Identities=14%  Similarity=0.401  Sum_probs=44.1

Q ss_pred             CCCCEEEEEe-eeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-----------EcCCCh-hhHHHHHHcCCCEEEEcc-
Q 033625           24 NPVEMVLVMT-VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-----------DGGLGP-STIAEAASAGANCIVAGS-   89 (115)
Q Consensus        24 ~~vD~vlvm~-v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-----------dGGI~~-~ni~~l~~~Gad~iv~Gs-   89 (115)
                      .++.-+.+.+ .+|-.   . .+...+-++.+++..|++.+.+           .-|++. +.+..|+++|+|-+--|+ 
T Consensus        95 ~G~~ei~iv~G~~p~~---~-~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~a  170 (353)
T PRK08444         95 RGIKEVHIVSAHNPNY---G-YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGA  170 (353)
T ss_pred             CCCCEEEEeccCCCCC---C-HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCc
Confidence            3566666554 34433   1 2345556777787778888887           556665 999999999999876643 


Q ss_pred             ccc
Q 033625           90 SVF   92 (115)
Q Consensus        90 aif   92 (115)
                      .+|
T Consensus       171 Ei~  173 (353)
T PRK08444        171 EIF  173 (353)
T ss_pred             hhc
Confidence            477

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=83.32  E-value=17  Score=28.16  Aligned_cols=79  Identities=13%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i   85 (115)
                      .|..+..+++++. -++|++=  +.++|--|.+.+  .--+++|+++++.. ++|++.=|  |+..+.++.+.+.|+.-|
T Consensus       152 ~T~peea~~Fv~~-TgvD~LAvaiGt~HG~yk~~p--~Ldf~~L~~I~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki  227 (282)
T TIGR01858       152 YTDPQEAKEFVEA-TGVDSLAVAIGTAHGLYKKTP--KLDFDRLAEIREVV-DVPLVLHGASDVPDEDVRRTIELGICKV  227 (282)
T ss_pred             cCCHHHHHHHHHH-HCcCEEecccCccccCcCCCC--ccCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence            5777888888854 5889764  333455555533  34566777777764 78999888  578899999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      =+++.+.
T Consensus       228 Ni~T~l~  234 (282)
T TIGR01858       228 NVATELK  234 (282)
T ss_pred             EeCcHHH
Confidence            9998875

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=83.28  E-value=15  Score=27.89  Aligned_cols=77  Identities=16%  Similarity=0.260  Sum_probs=50.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEe--eeCCCCCccc-------------chhHHHHHHHHHhhCCCCcEEEEcCCCh----
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMT--VEPGFGGQKF-------------MPEMMDKVRSLRNRYPSLDIEVDGGLGP----   71 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~-------------~~~~~~ki~~l~~~~~~~~i~~dGGI~~----   71 (115)
                      |.++.+..+.+  .++|+|=+.-  .+|=.+|--.             ....++.++++|+...++|+..-+=-|+    
T Consensus        25 ~~~~~~~~l~~--~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~  102 (256)
T TIGR00262        25 TSLEIIKTLIE--AGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRK  102 (256)
T ss_pred             HHHHHHHHHHH--cCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhh
Confidence            33455666552  5899997643  2343444222             1356666778876645788878887776    


Q ss_pred             --hh-HHHHHHcCCCEEEEcc
Q 033625           72 --ST-IAEAASAGANCIVAGS   89 (115)
Q Consensus        72 --~n-i~~l~~~Gad~iv~Gs   89 (115)
                        ++ +..+.++|+|.+++--
T Consensus       103 G~e~f~~~~~~aGvdgviipD  123 (256)
T TIGR00262       103 GVEEFYAKCKEVGVDGVLVAD  123 (256)
T ss_pred             hHHHHHHHHHHcCCCEEEECC
Confidence              44 7789999999987763

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]

Probab=83.26  E-value=4.5  Score=30.55  Aligned_cols=73  Identities=19%  Similarity=0.279  Sum_probs=48.3

Q ss_pred             CCCCEEEEEeee-CCCC-CcccchhHHHHHHHHHhh---CCCCc---EEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           24 NPVEMVLVMTVE-PGFG-GQKFMPEMMDKVRSLRNR---YPSLD---IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        24 ~~vD~vlvm~v~-pG~~-gq~~~~~~~~ki~~l~~~---~~~~~---i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      +.+.+.++|++- ++++ .+.-.| -+..+-++|+.   -.++|   +...=|.+.+-... ++.|.+.+=+||.||++.
T Consensus       160 ~nL~f~GlMTIGs~~~s~ss~eNp-DF~~L~~~r~~ic~~lg~~~dq~eLSMGMS~DF~~A-Ie~Gst~VRvGStIFG~R  237 (244)
T KOG3157|consen  160 KNLKFSGLMTIGSFDNSHSSGENP-DFQVLVKLRESICKKLGIPADQVELSMGMSADFLLA-IEQGSTNVRVGSTIFGAR  237 (244)
T ss_pred             CcceeeeeEEeccccccccCCCCc-cHHHHHHHHHHHHHHhCCChHHhhhhcccchhHHHH-HHhCCceEEeccccccCC
Confidence            678889999985 5665 222221 23444444432   12455   77788887765544 588999999999999987


Q ss_pred             CHH
Q 033625           96 EPA   98 (115)
Q Consensus        96 d~~   98 (115)
                      .+.
T Consensus       238 ~y~  240 (244)
T KOG3157|consen  238 EYK  240 (244)
T ss_pred             CCC
Confidence            653

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=83.10  E-value=20  Score=27.92  Aligned_cols=79  Identities=16%  Similarity=0.194  Sum_probs=58.1

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i   85 (115)
                      .|..+..+++++. -++|.+=+  .++|--|.+.+  .--+++|+++++.. ++|++.=|  |+..+.++.+.+.|+.-+
T Consensus       155 yT~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p--~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~GI~Ki  230 (286)
T PRK08610        155 YADPKECQELVEK-TGIDALAPALGSVHGPYKGEP--KLGFKEMEEIGLST-GLPLVLHGGTGIPTKDIQKAIPFGTAKI  230 (286)
T ss_pred             cCCHHHHHHHHHH-HCCCEEEeeccccccccCCCC--CCCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence            5888888888854 48997643  33454455433  22466777777664 79999888  578899999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      =+++.+.
T Consensus       231 Ni~T~l~  237 (286)
T PRK08610        231 NVNTENQ  237 (286)
T ss_pred             EeccHHH
Confidence            9998874

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=83.07  E-value=19  Score=28.04  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i   85 (115)
                      .|..+..+.+++. -++|.+=+  .++|--|.+.+  .--+++|+++++.. ++|++.=|  |+..+.++.+.+.|+.-+
T Consensus       154 ~T~peea~~Fv~~-TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki  229 (284)
T PRK09195        154 YTDPAQAREFVEA-TGIDSLAVAIGTAHGMYKGEP--KLDFDRLENIRQWV-NIPLVLHGASGLPTKDIQQTIKLGICKV  229 (284)
T ss_pred             CCCHHHHHHHHHH-HCcCEEeeccCccccccCCCC--cCCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence            5778888888844 47897643  33455555533  23466777777664 78998888  588999999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      =+++.+.
T Consensus       230 Ni~T~l~  236 (284)
T PRK09195        230 NVATELK  236 (284)
T ss_pred             EeCcHHH
Confidence            9998875

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=82.74  E-value=20  Score=27.79  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i   85 (115)
                      -|..+..+++++. -++|.+=+  .++|--|.+.+  .--+++|+++++.. ++|++.=|  |+..+.++...+.|+.-+
T Consensus       154 ~T~peeA~~Fv~~-TgvD~LAvaiGt~HG~y~~~p--~Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~Ki  229 (284)
T PRK12737        154 YTNPDAAAEFVER-TGIDSLAVAIGTAHGLYKGEP--KLDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKV  229 (284)
T ss_pred             CCCHHHHHHHHHH-hCCCEEeeccCccccccCCCC--cCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence            5777888888854 58897643  33455565533  23556777777654 68998888  588999999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      =+++.+.
T Consensus       230 Ni~T~l~  236 (284)
T PRK12737        230 NVATELK  236 (284)
T ss_pred             EeCcHHH
Confidence            9998874

>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain

Probab=82.72  E-value=11  Score=24.85  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHH--HHHcCCCEEEEc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE--AASAGANCIVAG   88 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~--l~~~Gad~iv~G   88 (115)
                      ...|.|.+-+..+-    .  ....+-++.+|+.+|+. ..+.||......++  +...++|.++.|
T Consensus        38 ~~pdiv~~S~~~~~----~--~~~~~~~~~ik~~~p~~-~iv~GG~~~t~~p~~~~~~~~~D~vv~G   97 (127)
T cd02068          38 LKPDVVGISLMTSA----I--YEALELAKIAKEVLPNV-IVVVGGPHATFFPEEILEEPGVDFVVIG   97 (127)
T ss_pred             cCCCEEEEeecccc----H--HHHHHHHHHHHHHCCCC-EEEECCcchhhCHHHHhcCCCCCEEEEC
Confidence            36888876443221    1  14555567777777765 55667766554443  467899999888

This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=82.51  E-value=3.2  Score=30.53  Aligned_cols=44  Identities=27%  Similarity=0.472  Sum_probs=33.5

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +..++-|+++++.+|++.+-+=.=+|.+.++...++||+++|.=
T Consensus        44 ~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP   87 (196)
T PF01081_consen   44 PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP   87 (196)
T ss_dssp             TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES
T ss_pred             ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC
Confidence            45677788888888887776666678999999999999998765

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=82.37  E-value=7.8  Score=30.09  Aligned_cols=82  Identities=26%  Similarity=0.327  Sum_probs=56.0

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC--CChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG--LGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG--I~~~ni~~l~~~Gad~i   85 (115)
                      .|..+...++++. -++|.+=+  .++|-.|.+-.-..--+++|+++++..+++|++.=||  +..+.++.+.+.|+.-|
T Consensus       154 ~TdP~~a~~Fv~~-TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki  232 (287)
T PF01116_consen  154 YTDPEEAKEFVEE-TGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKI  232 (287)
T ss_dssp             SSSHHHHHHHHHH-HTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred             ccCHHHHHHHHHH-hCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence            4777888888744 58998532  2233334441111235677888877755799999885  78899999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      =+++.+.
T Consensus       233 Ni~T~~~  239 (287)
T PF01116_consen  233 NIGTELR  239 (287)
T ss_dssp             EESHHHH
T ss_pred             EEehHHH
Confidence            9998765

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=82.11  E-value=4.7  Score=31.71  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHhhCCCCcEEE---EcCCChhhHHHHHHcCCCEEEEcc
Q 033625           46 EMMDKVRSLRNRYPSLDIEV---DGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~---dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ..++.|+.+++.. ++|+.+   -.|.+.+.+..+.++|+|.++++.
T Consensus       166 ~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg  211 (333)
T TIGR02151       166 GWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG  211 (333)
T ss_pred             HHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence            4557788888764 688876   445899999999999999999975

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=81.99  E-value=4.3  Score=32.62  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=46.6

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEccccc
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      ..|.|-+  .+-|-.-.++-..+++-|-++++..+ .+++.+||||+ .-.+-..+..|||.+-+|..+.
T Consensus       239 g~~~I~v--snhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L  306 (360)
T COG1304         239 GADGIEV--SNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL  306 (360)
T ss_pred             CceEEEE--EcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence            4555543  33343444566777777888887766 49999999997 4456667799999999997743

>PLN02561 triosephosphate isomerase

Probab=81.96  E-value=14  Score=28.29  Aligned_cols=64  Identities=20%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             EEEeeeCCC---CCcccchhHHHHHHH-HHh----h-----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccC
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDKVRS-LRN----R-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFG   93 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~ki~~-l~~----~-----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~   93 (115)
                      ++++-+|-.   +|+...++-.+.+.+ +|+    +     .++++|.-=|+|+++|+.++ ...++|++-+|++=..
T Consensus       161 iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~  238 (253)
T PLN02561        161 VVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK  238 (253)
T ss_pred             eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH
Confidence            456667732   455544444433322 222    1     23689999999999999986 6778999999987554

>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]

Probab=81.93  E-value=7.4  Score=29.86  Aligned_cols=83  Identities=14%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHcC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +...+-++.+..++ +.+++|.|.+.+.+    -|+.|++-.++..+.|+.+-+. +.+=+..-+=-.+++-++.+.+.|
T Consensus       151 iEtr~gl~nLDaIa-aveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~~~p~~a~~yl~lG  229 (255)
T COG3836         151 IETRAGLDNLDAIA-AVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILAADPADARRYLALG  229 (255)
T ss_pred             EccHHHHHHHHHHH-ccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHhC
Confidence            33445567777776 44799999987643    3666666555655555544221 111111111124789999999999


Q ss_pred             CCEEEEccc
Q 033625           82 ANCIVAGSS   90 (115)
Q Consensus        82 ad~iv~Gsa   90 (115)
                      +.++++|+.
T Consensus       230 a~fvavG~D  238 (255)
T COG3836         230 ATFVAVGSD  238 (255)
T ss_pred             CeEEEEecc
Confidence            999999964

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional

Probab=81.90  E-value=14  Score=25.46  Aligned_cols=74  Identities=11%  Similarity=0.053  Sum_probs=44.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.+++-...|+..       .++.++++++..++.|+.+. +--+.+......++|++.++.     +.-++.+-..
T Consensus        43 ~~~d~illd~~~~~~~-------g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~-----kp~~~~~l~~  110 (222)
T PRK10643         43 GHYSLVVLDLGLPDED-------GLHLLRRWRQKKYTLPVLILTARDTLEDRVAGLDVGADDYLV-----KPFALEELHA  110 (222)
T ss_pred             CCCCEEEEECCCCCCC-------HHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHH
Confidence            3578887655455543       34556677766566776554 445566777788999987643     3345555555


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..+.
T Consensus       111 ~i~~~~~  117 (222)
T PRK10643        111 RIRALIR  117 (222)
T ss_pred             HHHHHHh
Confidence            5554443

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=81.79  E-value=3.3  Score=34.44  Aligned_cols=90  Identities=17%  Similarity=0.346  Sum_probs=61.1

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-------chhHHHHHHHHHhhCCCCcEE--EEcCCC-------hhh--
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-------MPEMMDKVRSLRNRYPSLDIE--VDGGLG-------PST--   73 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-------~~~~~~ki~~l~~~~~~~~i~--~dGGI~-------~~n--   73 (115)
                      ..+...+++   +..|-+.+-+++-+ +|..|       .++.+++++.+|+..++.++.  .- |.|       +++  
T Consensus        33 ~t~d~l~ia---~~ld~~G~~siE~w-GGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlR-G~n~vgy~~ypddvv  107 (468)
T PRK12581         33 SIEDMLPVL---TILDKIGYYSLECW-GGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLR-GQNLLGYRHYADDIV  107 (468)
T ss_pred             CHHHHHHHH---HHHHhcCCCEEEec-CCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeec-cccccCccCCcchHH
Confidence            345555666   55666666666664 34333       367899999999988876654  45 422       234  


Q ss_pred             ---HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           74 ---IAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        74 ---i~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                         ++...+.|+|+|=+..++...++...+++..++
T Consensus       108 ~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~  143 (468)
T PRK12581        108 DKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKK  143 (468)
T ss_pred             HHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHH
Confidence               777889999999998888755666666665554

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=81.57  E-value=13  Score=29.48  Aligned_cols=61  Identities=28%  Similarity=0.311  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc----ccCCCCHHHHHHHHHHH
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS----VFGAPEPAHVISLMRKS  107 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa----if~~~d~~~~~~~l~~~  107 (115)
                      ...+.|+++++.. +.|+.+=|--+.+.+..+.++|+|.|++...    +-....+...+.++++.
T Consensus       200 ~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~  264 (344)
T cd02922         200 LTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKH  264 (344)
T ss_pred             CCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHH
Confidence            4567788888764 6899999888999999999999999998632    21223344455555443

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=81.54  E-value=4.4  Score=30.92  Aligned_cols=47  Identities=21%  Similarity=0.383  Sum_probs=39.1

Q ss_pred             CCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           60 SLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        60 ~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      ++.+++--| -|++.+..+..+|+..+.+|-++.++.||+..+.+|..
T Consensus       237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~  284 (289)
T KOG4201|consen  237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG  284 (289)
T ss_pred             ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence            444555445 47999999999999999999999999999999888753

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=81.52  E-value=8.3  Score=29.93  Aligned_cols=74  Identities=24%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             HhHHHhHhCCCCCCEEEEEe--eeCCCCCcccchh---HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           14 EEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMPE---MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~~~---~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +..+.+++  .++|+|=|.+  ..||.....-.++   ...-|+.+++.. ++||++|=- +++.+...+++|||++=-.
T Consensus        42 ~~a~~~~~--~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT~-~~~va~~AL~~GadiINDI  117 (282)
T PRK11613         42 KHANLMIN--AGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTS-KPEVIRESAKAGAHIINDI  117 (282)
T ss_pred             HHHHHHHH--CCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEECC-CHHHHHHHHHcCCCEEEEC
Confidence            44445552  5899987763  4476543222222   222345555433 688888865 7888888888888877544


Q ss_pred             ccc
Q 033625           89 SSV   91 (115)
Q Consensus        89 sai   91 (115)
                      +++
T Consensus       118 ~g~  120 (282)
T PRK11613        118 RSL  120 (282)
T ss_pred             CCC
Confidence            543

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=81.49  E-value=4.1  Score=32.85  Aligned_cols=42  Identities=29%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      -+.+.|+.+|+.- +.||.+=|=.+.+....+.++|+|.|++.
T Consensus       211 ~tW~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~Vs  252 (367)
T PLN02493        211 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVS  252 (367)
T ss_pred             CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEEC
Confidence            4567788888764 69999999999999999999999999887

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=81.42  E-value=23  Score=27.55  Aligned_cols=79  Identities=11%  Similarity=0.120  Sum_probs=58.2

Q ss_pred             CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCChhhHHHHHHcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGPSTIAEAASAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~~ni~~l~~~Gad~i   85 (115)
                      .|..+...++++. -++|.+=  +.++|--|.+.+-  -.+++++++++.. ++|++.=|  |+..+.++...+.|+.-|
T Consensus       154 ~T~peea~~Fv~~-TgvD~LAvaiGt~HG~Y~~~p~--Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~Ki  229 (286)
T PRK12738        154 LTDPQEAKRFVEL-TGVDSLAVAIGTAHGLYSKTPK--IDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKV  229 (286)
T ss_pred             CCCHHHHHHHHHH-hCCCEEEeccCcccCCCCCCCc--CCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence            5778888888844 4799763  2334544544332  3467788887765 79999888  578899999999999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      =+++.+.
T Consensus       230 Ni~T~l~  236 (286)
T PRK12738        230 NVATELK  236 (286)
T ss_pred             EeCcHHH
Confidence            9998874

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III

Probab=81.29  E-value=22  Score=29.17  Aligned_cols=84  Identities=17%  Similarity=0.276  Sum_probs=55.1

Q ss_pred             CCCCEEEEEeeeCCC--CCcccchhHHHHHHHH-HhhC---CCCcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCC-
Q 033625           24 NPVEMVLVMTVEPGF--GGQKFMPEMMDKVRSL-RNRY---PSLDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGA-   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~--~gq~~~~~~~~ki~~l-~~~~---~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~-   94 (115)
                      .++|.+.+    |++  +.-.+.++....+.+. ++-.   +.+-=+..||+++..++++ ...|-|++.. |.+|+.. 
T Consensus       297 aGaD~~~~----~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHp  372 (412)
T TIGR03326       297 IGVDQLHT----GTAGVGKLEGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHP  372 (412)
T ss_pred             cCCCeeee----CCCccCCCCCCHHHHHHHHHHHhCcccCCCCceEecCCCCChhHHHHHHHhcCCceEEecCCccccCC
Confidence            58898863    444  2223334443344333 3211   2344578999999999985 7789997765 5779986 


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 033625           95 PEPAHVISLMRKSVEDA  111 (115)
Q Consensus        95 ~d~~~~~~~l~~~~~~~  111 (115)
                      +.+++-++.+|+.++.+
T Consensus       373 ~G~~aGa~A~rqA~ea~  389 (412)
T TIGR03326       373 DGPRAGAKALRAAIDAI  389 (412)
T ss_pred             CChhhHHHHHHHHHHHH
Confidence            46888889999877653

Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.

>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2

Probab=81.25  E-value=5.4  Score=24.89  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=40.8

Q ss_pred             eEEEec-CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALK-PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~-p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +.+..| |...++.+...+   ++...-.|+.+.    +..|.               .+...++...-.+.+++|.++|
T Consensus         6 ~~l~~Nvp~~~l~~v~~il---Pg~~~PTVs~L~----~~~w~---------------AV~~vV~~~~~~~~~~~Lk~~G   63 (75)
T PF08029_consen    6 VLLMMNVPRESLEEVIKIL---PGLKSPTVSPLA----DEDWV---------------AVHAVVPEKQVWDLMDKLKAAG   63 (75)
T ss_dssp             EEEEEEEECCCHHHHHHHS-----SSS-EEEE-S----STTEE---------------EEEEEEECCCHHHHHHHHHCTT
T ss_pred             eEEEEeCCHHHHHHHHHhC---CCCCCCceeecC----CCCEE---------------EEEEEecHHHHHHHHHHHHHcC
Confidence            445555 667777777777   666666666551    11111               3668889999999999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      |..|++-
T Consensus        64 A~~Ilv~   70 (75)
T PF08029_consen   64 ASDILVL   70 (75)
T ss_dssp             -EEEEEE
T ss_pred             CCEEEEE
Confidence            9888764

4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=81.13  E-value=13  Score=27.86  Aligned_cols=83  Identities=19%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc---ccccC----CCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG---SSVFG----APE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G---saif~----~~d   96 (115)
                      .++|+|=+.  .|..+     +...+.++++++..++..+.+-+-.+.+.++...++|+|.+-+.   |.++.    ..+
T Consensus        32 ~Gv~~iE~g--~p~~~-----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~  104 (259)
T cd07939          32 AGVDEIEVG--IPAMG-----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKD  104 (259)
T ss_pred             cCCCEEEEe--cCCCC-----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCC
Confidence            477877653  34322     23346677777755667777776578999999999999987665   33321    124


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 033625           97 PAHVISLMRKSVEDAQK  113 (115)
Q Consensus        97 ~~~~~~~l~~~~~~~~~  113 (115)
                      .++.++.+++.++.+++
T Consensus       105 ~~~~~~~~~~~i~~a~~  121 (259)
T cd07939         105 RAWVLDQLRRLVGRAKD  121 (259)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55666677776665543

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=80.90  E-value=17  Score=27.30  Aligned_cols=82  Identities=15%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccc---hhHHHHHHHHHhhCC-CCcEE-EEcCCChh-hHH---HHHHcCCCEEEEcccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFM---PEMMDKVRSLRNRYP-SLDIE-VDGGLGPS-TIA---EAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~---~~~~~ki~~l~~~~~-~~~i~-~dGGI~~~-ni~---~l~~~Gad~iv~Gsaif~~   94 (115)
                      .++|.+.++    |.+|.-+.   ++-.+-++.+++... .+|+. -.|+.+.+ .+.   ...+.|+|.+.+..-.|..
T Consensus        30 ~Gv~gi~~~----GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~  105 (281)
T cd00408          30 AGVDGLVVL----GTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNK  105 (281)
T ss_pred             cCCCEEEEC----CCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCC
Confidence            478888654    66665443   222333444444432 45543 23333332 333   4578899999999877665


Q ss_pred             CCHHHHHHHHHHHHH
Q 033625           95 PEPAHVISLMRKSVE  109 (115)
Q Consensus        95 ~d~~~~~~~l~~~~~  109 (115)
                      .+.++.++.++++.+
T Consensus       106 ~~~~~~~~~~~~ia~  120 (281)
T cd00408         106 PSQEGIVAHFKAVAD  120 (281)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            666776666666554

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=80.78  E-value=4.8  Score=32.38  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ..+.|+++++.. +.|+.+-|=++.+....+.++|+|.|+++
T Consensus       224 ~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VS  264 (361)
T cd04736         224 NWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILS  264 (361)
T ss_pred             CHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEEC
Confidence            466788888876 56888888899999999999999999875

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=80.75  E-value=21  Score=28.60  Aligned_cols=82  Identities=13%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             CCCHHhHHHhHhCCCCCCEEE--EEeeeCCCCCc-ccc--hhHHHHHHHHHhhCCCCcEEEEcCCC--------------
Q 033625           10 GTSVEEVYPLVEGANPVEMVL--VMTVEPGFGGQ-KFM--PEMMDKVRSLRNRYPSLDIEVDGGLG--------------   70 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vl--vm~v~pG~~gq-~~~--~~~~~ki~~l~~~~~~~~i~~dGGI~--------------   70 (115)
                      -|..+...++++. -++|.+=  +.++|--|.+. +..  .--+++++++++..+++|++.=||=.              
T Consensus       172 ~T~PeeA~~Fv~~-TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~  250 (347)
T PRK13399        172 LTDPDQAVDFVQR-TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGG  250 (347)
T ss_pred             CCCHHHHHHHHHH-HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcC
Confidence            5777778888844 4788653  23344445431 111  13467888888876579999888754              


Q ss_pred             ---------hhhHHHHHHcCCCEEEEccccc
Q 033625           71 ---------PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        71 ---------~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                               .|.++...+.|+.-|=+++.+.
T Consensus       251 ~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~  281 (347)
T PRK13399        251 KMKETYGVPVEEIQRGIKHGVRKVNIDTDIR  281 (347)
T ss_pred             CccccCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence                     6899999999999999998764

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=80.70  E-value=15  Score=26.62  Aligned_cols=76  Identities=14%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc---EEEEcCCChhhHH----HHHHcCCCEEE
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD---IEVDGGLGPSTIA----EAASAGANCIV   86 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~---i~~dGGI~~~ni~----~l~~~Gad~iv   86 (115)
                      ..+++.+.  .++|-|-++ ++.|.-.........+.+.++++...+.|   |.-.|..+.+.+.    ...++|||++=
T Consensus        73 ~eve~A~~--~GAdevdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IK  149 (203)
T cd00959          73 AEAREAIA--DGADEIDMV-INIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIK  149 (203)
T ss_pred             HHHHHHHH--cCCCEEEEe-ecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            34555553  245554332 45563212223456666777777654555   4556778877754    45889999998


Q ss_pred             Eccccc
Q 033625           87 AGSSVF   92 (115)
Q Consensus        87 ~Gsaif   92 (115)
                      ..+.-.
T Consensus       150 TsTG~~  155 (203)
T cd00959         150 TSTGFG  155 (203)
T ss_pred             cCCCCC
Confidence            886654

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=80.69  E-value=8.3  Score=24.70  Aligned_cols=55  Identities=18%  Similarity=0.250  Sum_probs=38.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      ..+|.+++++-+.        ...+.-...+++.++..++.+--. +.++.+.+.+.|+|.++.
T Consensus        61 ~~a~~vv~~~~~d--------~~n~~~~~~~r~~~~~~~ii~~~~-~~~~~~~l~~~g~d~vi~  115 (116)
T PF02254_consen   61 EKADAVVILTDDD--------EENLLIALLARELNPDIRIIARVN-DPENAELLRQAGADHVIS  115 (116)
T ss_dssp             GCESEEEEESSSH--------HHHHHHHHHHHHHTTTSEEEEEES-SHHHHHHHHHTT-SEEEE
T ss_pred             cccCEEEEccCCH--------HHHHHHHHHHHHHCCCCeEEEEEC-CHHHHHHHHHCCcCEEEC
Confidence            5788887654321        344445566677788777777665 788899999999999874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=80.57  E-value=23  Score=26.95  Aligned_cols=97  Identities=11%  Similarity=0.070  Sum_probs=59.4

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      +++.+-++.++.+. + .++|.|=+..  |...     +...+.++.+.+......+.+-.=.+.+.++...++|+|.+-
T Consensus        19 ~s~~~k~~i~~~L~-~-~Gv~~IEvG~--P~~~-----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~   89 (262)
T cd07948          19 FDTEDKIEIAKALD-A-FGVDYIELTS--PAAS-----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD   89 (262)
T ss_pred             CCHHHHHHHHHHHH-H-cCCCEEEEEC--CCCC-----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence            33333344455544 2 4788887653  5433     444555666655444455666667789999999999999876


Q ss_pred             Ec---ccccC----CCCHHHHHHHHHHHHHHHh
Q 033625           87 AG---SSVFG----APEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        87 ~G---saif~----~~d~~~~~~~l~~~~~~~~  112 (115)
                      +.   |..+.    ..++++.++.+++.++.++
T Consensus        90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~  122 (262)
T cd07948          90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVK  122 (262)
T ss_pred             EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            64   33332    2356677777777766544

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=80.56  E-value=4.7  Score=32.65  Aligned_cols=42  Identities=26%  Similarity=0.337  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      -+.+.|+++++.. +.|+.+=|=.+.+....+.++|+|.|++.
T Consensus       240 ~tW~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vs  281 (383)
T cd03332         240 LTWEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVS  281 (383)
T ss_pred             CCHHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEc
Confidence            4567888888764 68999999999999999999999999976

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PTZ00413 lipoate synthase; Provisional

Probab=80.48  E-value=7.1  Score=31.90  Aligned_cols=82  Identities=10%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             CCCCEEEEEeeeC-CCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-C--ChhhHHHHHHcCCCEEEEc----ccccC--
Q 033625           24 NPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-L--GPSTIAEAASAGANCIVAG----SSVFG--   93 (115)
Q Consensus        24 ~~vD~vlvm~v~p-G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I--~~~ni~~l~~~Gad~iv~G----saif~--   93 (115)
                      .++.|++|.++.- ......+ ....+.++++++..+++.|++--| .  +.+.+..|+++|+|.+--.    -.+|.  
T Consensus       192 ~Gl~~~VVTSv~RDDL~D~ga-~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~V  270 (398)
T PTZ00413        192 MGVDYIVMTMVDRDDLPDGGA-SHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYV  270 (398)
T ss_pred             cCCCEEEEEEEcCCCCChhhH-HHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHH
Confidence            4688998888852 2211111 234455777887778888888733 3  8899999999999998655    22442  


Q ss_pred             -C--CCHHHHHHHHHH
Q 033625           94 -A--PEPAHVISLMRK  106 (115)
Q Consensus        94 -~--~d~~~~~~~l~~  106 (115)
                       .  .++.+.++.|+.
T Consensus       271 Rt~~atYe~sLe~Lr~  286 (398)
T PTZ00413        271 RDRRASYRQSLKVLEH  286 (398)
T ss_pred             ccCcCCHHHHHHHHHH
Confidence             1  256666666554

>PLN02979 glycolate oxidase

Probab=80.37  E-value=4.7  Score=32.53  Aligned_cols=42  Identities=29%  Similarity=0.215  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      -+.+.|+.+|+.- +.|+.+=|=.+.+....+.++|+|.|+++
T Consensus       210 ltW~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~Vs  251 (366)
T PLN02979        210 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVS  251 (366)
T ss_pred             CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEEC
Confidence            4567788888764 79999999999999999999999999887

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=80.04  E-value=21  Score=26.08  Aligned_cols=73  Identities=21%  Similarity=0.369  Sum_probs=50.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.+++--.-||..       .++-++++++..|++++ ....--+.+.+....++||++++.-     ..++.+-..
T Consensus        45 ~~pdvvl~Dl~mP~~~-------G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K-----~~~~~~l~~  112 (211)
T COG2197          45 LKPDVVLLDLSMPGMD-------GLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLK-----DASPEELVE  112 (211)
T ss_pred             cCCCEEEEcCCCCCCC-------hHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHH
Confidence            5789988776667744       45556777777787664 4566777888889999999999664     445555555


Q ss_pred             HHHHHH
Q 033625          103 LMRKSV  108 (115)
Q Consensus       103 ~l~~~~  108 (115)
                      .++..+
T Consensus       113 ai~~v~  118 (211)
T COG2197         113 AIRAVA  118 (211)
T ss_pred             HHHHHH
Confidence            555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	115
1h1y_A	228	The Structure Of The Cytosolic D-Ribulose-5-Phospha		3e-49
3ovp_A	228	Crystal Structure Of Hrpe Length = 228		3e-31
1tqx_A	227	Crystal Structure Of Pfal009167 A Putative D-Ribulo		1e-27
3qc3_A	225	Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epi		2e-26
1tqj_A	230	Crystal Structure Of D-Ribulose 5-Phosphate 3-Epime		9e-18
3inp_A	246	2.05 Angstrom Resolution Crystal Structure Of D-Rib		1e-17
2fli_A	220	The Crystal Structure Of D-Ribulose 5-Phosphate 3-E		2e-17
1rpx_A	230	D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tub		8e-17
3ct7_A	231	Crystal Structure Of D-Allulose 6-Phosphate 3-Epime		2e-11

>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3- Epimerase From Rice Complexed With Sulfate Length = 228

Iteration: 1
 Score =  189 bits (480), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 102/115 (88%)
Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGV+L+PGT VEEV+PLVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 114 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 173
Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDIEVDGGLGPSTI  AASAGANCIVAGSS+FGA EP  VIS +RKSVE +Q  S
Sbjct: 174 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228

>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe Length = 228

Iteration: 1
 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 86/116 (74%), Gaps = 4/116 (3%)
Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ G+A+KPGTSVE + P    AN ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169
Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
           LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK S
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225

>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5-Phosphate 3- Epimerase From P.Falciparum Length = 227

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Query: 4   GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
           G+++KP T V+++ P+++  N +  VLVMTVEPGFGGQ FM +MM KV  LR +Y +L+I
Sbjct: 118 GISIKPKTDVQKLVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNI 176
Query: 64  EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
           +VDGGL   T   +AS GAN IVAG+S+F A +P +VI  MR SV+    N
Sbjct: 177 QVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227

>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase (Np_954699) From Homo Sapiens At 2.20 A Resolution Length = 225

Iteration: 1
 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 78/111 (70%), Gaps = 4/111 (3%)
Query: 4   GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
           G+A+KPGTSVE + P    AN ++  LV TVEPGFGGQKF  +   KV  LR ++PSLDI
Sbjct: 117 GLAIKPGTSVEYLAPW---ANQIDXALVXTVEPGFGGQKFXEDXXPKVHWLRTQFPSLDI 173
Query: 64  EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK-SVEDAQK 113
           EVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    E AQK
Sbjct: 174 EVDGGVGPDTVHKCAEAGANXIVSGSAIXRSEDPRSVINLLRNVCSEAAQK 224

>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution Length = 230

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 9/111 (8%)
Query: 2   RPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           + G  L P T ++     +E   PV +++L+M+V PGFGGQ F+PE++ K+R+LR     
Sbjct: 114 KAGAVLNPSTPLD----FLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169
Query: 61  --LD--IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
             LD  IEVDGGL P+   +   AGAN IVAGS+VF AP  A  I+ +R S
Sbjct: 170 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS 220

>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of D-Ribulose-Phosphate 3- Epimerase From Francisella Tularensis Length = 246

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           ++ G+AL P T ++     VE  + ++ VL+M+V PGFGGQKF+P M+DK + +     S
Sbjct: 135 IQAGLALNPATGID-CLKYVE--SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISS 191
Query: 61  LD----IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
            D    +E+DGG+ P  IAE A  G N  VAGS++F +      I  MR  + 
Sbjct: 192 TDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244

>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate Length = 220

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP- 59
           M+ GV + PGT    + PL++    V+ VL+MTV PGFGGQ F+PE ++KV ++      
Sbjct: 110 MKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDE 166
Query: 60  ---SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
              S DIEVDGG+   TI     AGAN  VAGS +F A +    +  +R ++
Sbjct: 167 KGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218

>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts Length = 230

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 2   RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----R 57
           + GV L PGT +  +  +++    V++VL+M+V PGFGGQ F+   + K+  LR     R
Sbjct: 120 KAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAER 176
Query: 58  YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
             +  IEVDGG+GP    +   AGAN +VAGS+VFGAP+ A  I  ++ S
Sbjct: 177 GLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS 226

>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase From Escherichia Coli K-12 Length = 231

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNR 57
           M+ G+ L P T VE +   +  A+ +    VMTV+PGF GQ F+PEM+DK   +++ R R
Sbjct: 107 MKVGLILNPETPVEAMKYYIHKADKIT---VMTVDPGFAGQPFIPEMLDKLAELKAWRER 163
Query: 58  Y-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90
                +IEVDG    +T  +  +AGA+  + G+S
Sbjct: 164 EGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTS 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	115
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	8e-63
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	6e-59
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	2e-57
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	2e-42
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	7e-42
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	9e-42
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	4e-41
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	4e-39
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	4e-36
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	8e-20
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	4e-18
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	4e-18
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	2e-16
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	1e-15

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Length = 228

 Score =  189 bits (483), Expect = 8e-63
 Identities = 92/115 (80%), Positives = 102/115 (88%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGV+L+PGT VEEV+PLVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 114 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 173

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
           LDIEVDGGLGPSTI  AASAGANCIVAGSS+FGA EP  VIS +RKSVE +Q  S
Sbjct: 174 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Length = 227

 Score =  180 bits (458), Expect = 6e-59
 Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           +  G+++KP T V+++ P+++  N +  VLVMTVEPGFGGQ FM +MM KV  LR +Y +
Sbjct: 115 LWCGISIKPKTDVQKLVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKN 173

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
           L+I+VDGGL   T   +AS GAN IVAG+S+F A +P +VI  MR SV+    N
Sbjct: 174 LNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A Length = 228

 Score =  176 bits (448), Expect = 2e-57
 Identities = 61/113 (53%), Positives = 82/113 (72%), Gaps = 3/113 (2%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           M+ G+A+KPGTSVE + P       ++M LVMTVEPGFGGQKFM +MM KV  LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPWAN---QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
           LDIEVDGG+GP T+ + A AGAN IV+GS++  + +P  VI+L+R    +A +
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQ 222

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Length = 220

 Score =  137 bits (348), Expect = 2e-42
 Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
           M+ GV + PGT    + PL++    V+ VL+MTV PGFGGQ F+PE ++KV ++      
Sbjct: 110 MKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDE 166

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
           +  S DIEVDGG+   TI     AGAN  VAGS +F A +    +  +R ++ 
Sbjct: 167 KGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Length = 230

 Score =  136 bits (345), Expect = 7e-42
 Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 7/117 (5%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
            + G  L P T ++ +  ++      +++L+M+V PGFGGQ F+PE++ K+R+LR     
Sbjct: 113 KKAGAVLNPSTPLDFLEYVLPV---CDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
           R     IEVDGGL P+   +   AGAN IVAGS+VF AP  A  I+ +R S     +
Sbjct: 170 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEPQ 226

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Length = 246

 Score =  136 bits (345), Expect = 9e-42
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 7/113 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-- 58
           ++ G+AL P T ++ +  +      ++ VL+M+V PGFGGQKF+P M+DK + +      
Sbjct: 135 IQAGLALNPATGIDCLKYVESN---IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISS 191

Query: 59  --PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
               + +E+DGG+ P  IAE A  G N  VAGS++F +      I  MR  + 
Sbjct: 192 TDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Length = 230

 Score =  134 bits (340), Expect = 4e-41
 Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 7/113 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
            + GV L PGT +  +  +++    V++VL+M+V PGFGGQ F+   + K+  LR     
Sbjct: 119 AKAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAE 175

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
           R  +  IEVDGG+GP    +   AGAN +VAGS+VFGAP+ A  I  ++ S  
Sbjct: 176 RGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKR 228

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Length = 231

 Score =  129 bits (327), Expect = 4e-39
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
           M+ G+ L P T VE +   +      + + VMTV+PGF GQ F+PEM+DK+  L+     
Sbjct: 107 MKVGLILNPETPVEAMKYYIH---KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRER 163

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS-VFGAPEP-AHVISLMRKSVEDAQK 113
                +IEVDG    +T  +  +AGA+  + G+S +F   E       +M   +  A+ 
Sbjct: 164 EGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAKS 222

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Length = 237

 Score =  121 bits (307), Expect = 4e-36
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----N 56
           +  G  L P T + E+ P ++    ++++ ++T++P  G +     ++D+V  +     N
Sbjct: 127 VLIGACLCPETPISELEPYLDQ---IDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGN 183

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANC--IVAGSSVFGAPEPAHVISLMRKSV 108
           R     I +DG +                 +V+GS++F   E    + + + S+
Sbjct: 184 RRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSSI 236

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 79.6 bits (196), Expect = 8e-20
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 4   GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
            V L    + ++    ++ A   + +   + +    G+ +  + ++KV+ L        +
Sbjct: 115 QVELYGDWTYDQAQQWLD-AGISQAIYHQSRDALLAGETWGEKDLNKVKKLIE--MGFRV 171

Query: 64  EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
            V GGL   T+           +AG  +  A  PA      +  ++
Sbjct: 172 SVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIK 217

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218

 Score = 75.0 bits (184), Expect = 4e-18
 Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
               + +    ++++    V+     + +   + +    G  +  + +DK+R L      
Sbjct: 110 GEIQIEIYGNWTMQDAKAWVD-LGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSAL--G 166

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV 100
           +++ + GG+ P  I           +AG ++ GA      
Sbjct: 167 IELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTA 206

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216

 Score = 75.1 bits (184), Expect = 4e-18
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
               + L    + E+     + A   ++V   + +    G  +    +  ++ L +    
Sbjct: 107 GDVQIELTGYWTWEQAQQWRD-AGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD--MG 163

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110
             + V GGL    +        +  +AG S+  A  P       ++S+ +
Sbjct: 164 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Length = 211

 Score = 70.2 bits (172), Expect = 2e-16
 Identities = 16/84 (19%), Positives = 35/84 (41%)

Query: 29  VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88
             ++ V  G   Q    + +D + ++        I V GG+   T+ + A  G + ++ G
Sbjct: 128 ADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVG 187

Query: 89  SSVFGAPEPAHVISLMRKSVEDAQ 112
           S++  A +PA     + + +    
Sbjct: 188 SAITHAADPAGEARKISQVLLQHH 211

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207

 Score = 68.5 bits (167), Expect = 1e-15
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 28  MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 87
               + +  G   Q      ++ + +   +   +   V GG+  +TI     AGA   VA
Sbjct: 127 GAKFVEMHAGLDEQAKPGFDLNGLLAAGEK-ARVPFSVAGGVKVATIPAVQKAGAEVAVA 185

Query: 88  GSSVFGAPEPAHVISLMRKSV 108
           G +++GA +PA     +R ++
Sbjct: 186 GGAIYGAADPAAAAKELRAAI 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	115
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	100.0
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	99.97
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	99.97
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	99.97
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	99.96
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	99.95
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	99.95
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	99.89
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	99.89
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	99.79
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	99.77
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	99.76
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	99.71
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	99.68
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	99.67
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	99.66
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	99.66
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.64
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	99.64
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	99.64
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	99.63
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	99.63
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	99.63
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	99.55
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	99.52
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	99.5
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	99.44
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.37
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	99.33
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.31
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	99.25
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	99.25
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	99.22
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.21
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.17
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	99.14
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	99.12
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	99.07
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	99.05
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.04
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	98.99
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.95
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	98.94
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	98.93
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	98.93
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	98.9
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	98.84
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	98.81
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	98.8
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.8
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	98.8
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	98.75
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	98.73
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	98.72
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	98.71
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	98.71
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.69
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	98.69
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	98.68
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.68
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	98.66
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	98.61
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	98.61
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	98.6
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	98.59
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	98.58
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	98.57
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	98.55
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.54
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	98.52
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	98.51
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	98.49
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	98.48
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	98.48
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	98.45
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.45
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	98.39
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	98.37
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	98.35
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	98.33
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	98.32
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	98.31
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	98.31
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	98.29
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	98.28
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	98.28
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	98.26
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	98.21
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	98.17
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.15
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	98.13
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.12
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	98.07
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	98.07
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.06
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	97.99
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	97.97
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	97.95
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.94
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	97.93
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	97.88
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	97.86
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	97.78
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.77
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	97.76
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	97.74
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	97.73
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	97.62
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.61
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	97.58
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	97.56
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	97.55
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	97.54
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	97.53
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	97.5
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	97.49
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.47
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	97.47
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	97.46
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.46
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	97.45
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	97.44
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	97.43
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	97.43
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	97.42
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.42
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	97.41
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	97.38
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	97.37
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	97.36
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.35
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	97.34
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	97.33
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.33
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	97.31
1viz_A	240	PCRB protein homolog; structural genomics, unknown	97.31
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	97.3
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	97.29
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.28
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	97.27
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	97.24
2fds_A	352	Orotidine-monophosphate-decarboxylase; TIM barrel,	97.24
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.23
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.21
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	97.17
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	97.16
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	97.14
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	97.13
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.13
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.12
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	97.08
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.05
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	97.02
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	96.97
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	96.97
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	96.96
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	96.89
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.86
3qw4_B	453	UMP synthase; N-terminal orotidine monophosphate d	96.85
2ffc_A	353	Orotidine 5-monophosphate decarboxylase; PV-PF10_0	96.83
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	96.83
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	96.79
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	96.79
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	96.76
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	96.73
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	96.72
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	96.72
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	96.71
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	96.7
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.7
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	96.69
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	96.68
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	96.63
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	96.59
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	96.56
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	96.55
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.55
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.5
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	96.41
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	96.25
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	96.21
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.19
2i14_A	395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	96.17
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.08
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.98
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	95.97
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	95.92
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.81
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	95.75
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	95.71
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	95.61
3n3m_A	342	Orotidine 5'-phosphate decarboxylase; P. falciparu	95.6
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	95.53
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	95.51
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	95.5
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	95.46
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	95.25
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	95.19
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	95.11
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	95.07
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	94.96
1ccw_A	137	Protein (glutamate mutase); coenzyme B12, radical	94.95
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	94.85
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	94.82
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	94.61
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	94.49
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	94.48
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	94.48
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	94.36
1yya_A	250	Triosephosphate isomerase; riken structural genomi	94.31
3sy1_A	245	UPF0001 protein YGGS; engineered protein, structur	94.17
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	94.17
2j27_A	250	Triosephosphate isomerase glycosomal; TIM, 2PG, LO	94.15
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	94.1
2yc6_A	257	Triosephosphate isomerase; glycolysis; HET: PGA; 1	93.92
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	93.9
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	93.89
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	93.85
3lte_A	132	Response regulator; structural genomics, PSI, prot	93.85
1aw2_A	256	Triosephosphate isomerase; psychrophilic, vibrio m	93.69
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	93.58
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	93.55
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	93.5
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	93.49
3snk_A	135	Response regulator CHEY-like protein; P-loop conta	93.38
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	93.29
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	93.08
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	92.99
2qxy_A	142	Response regulator; regulation of transcription, N	92.92
1tre_A	255	Triosephosphate isomerase; intramolecular oxidored	92.9
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	92.86
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	92.72
3nhm_A	133	Response regulator; protein structure initiative I	92.7
2f7f_A	494	Nicotinate phosphoribosyltransferase, putative; st	92.57
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	92.4
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	92.37
3gt7_A	154	Sensor protein; structural genomics, signal receiv	92.26
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	92.05
3kto_A	136	Response regulator receiver protein; PSI-II,struct	91.86
3rqi_A	184	Response regulator protein; structural genomics, s	91.8
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	91.77
2xij_A	762	Methylmalonyl-COA mutase, mitochondrial; isomerase	91.6
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	91.6
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	91.59
3oa3_A	288	Aldolase; structural genomics, seattle structural	91.48
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	91.36
2zay_A	147	Response regulator receiver protein; structural ge	91.36
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	91.3
3eul_A	152	Possible nitrate/nitrite response transcriptional	91.23
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	91.2
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	91.07
1y80_A	210	Predicted cobalamin binding protein; corrinoid, fa	91.02
3cfy_A	137	Putative LUXO repressor protein; structural genomi	90.99
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	90.94
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	90.9
4dad_A	146	Putative pilus assembly-related protein; response	90.85
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	90.84
3i42_A	127	Response regulator receiver domain protein (CHEY-	90.78
3crn_A	132	Response regulator receiver domain protein, CHEY-;	90.66
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	90.66
2i2x_B	258	MTAC, methyltransferase 1; TIM barrel and helix bu	90.65
3hdg_A	137	Uncharacterized protein; two-component sensor acti	90.61
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	90.58
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	90.56
3ezx_A	215	MMCP 1, monomethylamine corrinoid protein 1; N ter	90.51
3jte_A	143	Response regulator receiver protein; structural ge	90.37
1b9b_A	255	TIM, protein (triosephosphate isomerase); thermoph	90.33
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	90.22
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	90.03
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	90.02
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	89.89
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	89.75
1ct5_A	256	Protein (yeast hypothetical protein, selenoMet); T	89.64
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	89.6
1mo0_A	275	TIM, triosephosphate isomerase; structural genomic	89.54
3r79_A	244	Uncharacterized protein; PSI-biology, structural g	89.51
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	89.49
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	89.42
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	89.28
1req_A	727	Methylmalonyl-COA mutase; isomerase, intramolecula	89.28
3lua_A	140	Response regulator receiver protein; two-component	89.2
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	89.04
1srr_A	124	SPO0F, sporulation response regulatory protein; as	89.0
2qv0_A	143	Protein MRKE; structural genomics, transcription,	88.96
2ayx_A	254	Sensor kinase protein RCSC; two independent struct	88.86
2i9e_A	259	Triosephosphate isomerase; 2.00A {Tenebrio molitor	88.75
3f6c_A	134	Positive transcription regulator EVGA; structural	88.67
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	88.63
2gkg_A	127	Response regulator homolog; social motility, recei	88.59
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	88.53
1h7n_A	342	5-aminolaevulinic acid dehydratase; lyase, aldolas	88.48
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	88.47
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	88.41
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	88.29
3grc_A	140	Sensor protein, kinase; protein structure initiati	88.23
3r0j_A	250	Possible two component system response transcript	88.17
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	88.11
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	87.95
1pv8_A	330	Delta-aminolevulinic acid dehydratase; porphobilin	87.79
1a04_A	215	Nitrate/nitrite response regulator protein NARL; s	87.64
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	87.55
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	87.5
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	87.18
3heb_A	152	Response regulator receiver domain protein (CHEY);	87.18
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	87.18
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	87.14
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	86.99
1yio_A	208	Response regulatory protein; transcription regulat	86.9
2rjn_A	154	Response regulator receiver:metal-dependent phosph	86.88
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	86.85
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	86.73
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	86.62
3mm4_A	206	Histidine kinase homolog; receiver domain, CKI1, c	86.54
1xhf_A	123	DYE resistance, aerobic respiration control protei	86.34
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	86.25
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	86.08
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	86.0
3eqz_A	135	Response regulator; structural genomics, unknown f	85.93
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	85.93
3n53_A	140	Response regulator receiver modulated diguanylate;	85.85
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	85.84
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	85.53
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	85.49
3cnb_A	143	DNA-binding response regulator, MERR family; signa	85.42
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	85.25
1r2r_A	248	TIM, triosephosphate isomerase; closed loop confor	85.21
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	85.18
3ilh_A	146	Two component response regulator; NYSGXRC, PSI-II,	85.17
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	85.15
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	85.0
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	84.73
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	84.72
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	84.71
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	84.7
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	84.7
1ney_A	247	TIM, triosephosphate isomerase; yeast, DHAP, dihyd	84.62
2csu_A	457	457AA long hypothetical protein; structural genomi	84.46
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	84.41
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	84.38
1viz_A	240	PCRB protein homolog; structural genomics, unknown	84.28
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	84.08
3cz5_A	153	Two-component response regulator, LUXR family; str	84.0
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	83.85
3klo_A	225	Transcriptional regulator VPST; REC domain, HTH do	83.72
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	83.63
1m6j_A	261	TIM, TPI, triosephosphate isomerase; asymmetry, mo	83.56
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	83.31
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	83.22
1zgz_A	122	Torcad operon transcriptional regulatory protein;	83.13
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	82.85
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	82.84
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	82.76
3cg0_A	140	Response regulator receiver modulated diguanylate	82.74
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	82.69
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	82.58
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	81.62
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	81.46
1ys7_A	233	Transcriptional regulatory protein PRRA; response	81.41
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	81.35
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	81.3
3q9s_A	249	DNA-binding response regulator; DNA binding protei	81.28
3s6d_A	310	Putative triosephosphate isomerase; seattle struct	81.14
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	81.13
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	81.08
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	80.98
1dxe_A	256	2-dehydro-3-deoxy-galactarate aldolase; class II a	80.83
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	80.48
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	80.46
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	80.45
1i3c_A	149	Response regulator RCP1; phytochrome, signaling pr	80.2
3qz6_A	261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	80.19
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	80.05

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=100.00  E-value=1e-32  Score=204.81  Aligned_cols=111  Identities=50%  Similarity=0.804  Sum_probs=104.1

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCC--CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA   78 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~--~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~   78 (115)
                      +|+|+++||+||++.+++++   +  .+|+|++|+|+|||+||+|.+..++|++++|++.++++|+||||||.+|++++.
T Consensus       115 ~k~gvalnp~tp~~~~~~~l---~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~  191 (227)
T 1tqx_A          115 LWCGISIKPKTDVQKLVPIL---DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISA  191 (227)
T ss_dssp             CEEEEEECTTSCGGGGHHHH---TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHH
T ss_pred             CeEEEEeCCCCcHHHHHHHh---hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHH
Confidence            58999999999999999999   8  899999999999999999999999999999998778999999999999999999


Q ss_pred             HcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 033625           79 SAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN  114 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~~  114 (115)
                      ++|||++|+||+||+++||++++++|++.+++.++|
T Consensus       192 ~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~~~~~~~  227 (227)
T 1tqx_A          192 SHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN  227 (227)
T ss_dssp             HHTCCEEEESHHHHTCSSHHHHHHHHHHHHHHC---
T ss_pred             HcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999988877654

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=99.97  E-value=5.7e-32  Score=203.01  Aligned_cols=107  Identities=37%  Similarity=0.705  Sum_probs=99.1

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~   76 (115)
                      +|+|+++||.||++.+++++   +.+|+|++|+|+|||+||+|.+.+++||+++|++    +++++|+||||||++|+++
T Consensus       135 ~k~Gvalnp~Tp~e~l~~~l---~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~  211 (246)
T 3inp_A          135 IQAGLALNPATGIDCLKYVE---SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAE  211 (246)
T ss_dssp             SEEEEEECTTCCSGGGTTTG---GGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHH
T ss_pred             CeEEEEecCCCCHHHHHHHH---hcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHH
Confidence            58999999999999999999   8899999999999999999999999999999876    3569999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +.++|||++|+||+||+++||++++++|++.+.+
T Consensus       212 ~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~i~~  245 (246)
T 3inp_A          212 IAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELNK  245 (246)
T ss_dssp             HHTTTCCEEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCEEEEehHHhCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999987753

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=99.97  E-value=1.6e-31  Score=198.31  Aligned_cols=109  Identities=57%  Similarity=0.955  Sum_probs=104.4

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +|+|+++||.||++.+++++   +.+|||++|+|+|||+||+|.+..++|++++|+..++++|+||||||++|++++.++
T Consensus       113 ~k~gval~p~t~~e~l~~~l---~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~a  189 (228)
T 3ovp_A          113 MKVGLAIKPGTSVEYLAPWA---NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEA  189 (228)
T ss_dssp             CEEEEEECTTSCGGGTGGGG---GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHH
T ss_pred             CCEEEEEcCCCCHHHHHHHh---ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHc
Confidence            57999999999999999999   889999999999999999999999999999999988899999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      |||++|+||+||+++||++++++|++.++++.
T Consensus       190 GAd~~VvGsaIf~a~dp~~~~~~l~~~~~~~~  221 (228)
T 3ovp_A          190 GANMIVSGSAIMRSEDPRSVINLLRNVCSEAA  221 (228)
T ss_dssp             TCCEEEESHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888754

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=99.97  E-value=1.2e-30  Score=193.99  Aligned_cols=107  Identities=35%  Similarity=0.596  Sum_probs=101.1

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~   76 (115)
                      +|+|+++||+||++.+++++   +.+|+|++|+|+|||+||+|.+..++||+++|++.    .+++|+||||||++|+++
T Consensus       107 ~k~gv~lnp~tp~~~~~~~l---~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~~~~~~~  183 (231)
T 3ctl_A          107 MKVGLILNPETPVEAMKYYI---HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEK  183 (231)
T ss_dssp             CEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHH
T ss_pred             CeEEEEEECCCcHHHHHHHH---hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcCHHHHHH
Confidence            58999999999999999999   89999999999999999999999999999999864    379999999999999999


Q ss_pred             HHHcCCCEEEEc-ccccCCCC-HHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAG-SSVFGAPE-PAHVISLMRKSVED  110 (115)
Q Consensus        77 l~~~Gad~iv~G-saif~~~d-~~~~~~~l~~~~~~  110 (115)
                      +.++|||++|+| |+||+++| |++++++|++.+++
T Consensus       184 ~~~aGAd~~V~G~saif~~~d~~~~~~~~l~~~~~~  219 (231)
T 3ctl_A          184 LMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILA  219 (231)
T ss_dssp             HHHHTCCEEEECTTTTGGGCSSHHHHHHHHHHHHHC
T ss_pred             HHHcCCCEEEEccHHHhCCCCcHHHHHHHHHHHHHH
Confidence            999999999999 99999888 99999999987765

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=99.96  E-value=8.9e-30  Score=190.14  Aligned_cols=104  Identities=20%  Similarity=0.367  Sum_probs=98.0

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~   76 (115)
                      +++|+++||+||++.+++++   +.+|||++|+|+|||+||+|.+..++||+++++...    +++|+||||||.+|+++
T Consensus       127 ~~~gv~l~p~Tp~~~l~~~l---~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~  203 (237)
T 3cu2_A          127 VLIGACLCPETPISELEPYL---DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKY  203 (237)
T ss_dssp             CEEEEEECTTSCGGGGTTTT---TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHH
T ss_pred             ceEEEEEeCCChHHHHHHHh---hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHH
Confidence            47899999999999999999   899999999999999999999999999999998753    69999999999999999


Q ss_pred             HHH--cCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           77 AAS--AGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        77 l~~--~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      +.+  +|||++|+||+||++ ||++++++|++.+
T Consensus       204 ~~~~~aGad~~VvGSaIf~~-d~~~~~~~l~~~~  236 (237)
T 3cu2_A          204 FKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSSI  236 (237)
T ss_dssp             HHHSSSCCCCEEECGGGGSS-CHHHHHHHHHHHC
T ss_pred             HHHhCCCCcEEEEeeHHhCC-CHHHHHHHHHHhh
Confidence            999  999999999999998 9999999998753

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=99.95  E-value=1e-28  Score=182.99  Aligned_cols=108  Identities=42%  Similarity=0.688  Sum_probs=95.8

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~   76 (115)
                      +++|+++||+||.+.+++++   +.+|||++|+++|||+||+|.+..+++|+++|+..+    ++||++|||||.+|+++
T Consensus       113 ~~~gv~~~p~t~~e~~~~~~---~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~  189 (230)
T 1tqj_A          113 KKAGAVLNPSTPLDFLEYVL---PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQ  189 (230)
T ss_dssp             CEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHH
T ss_pred             CcEEEEEeCCCcHHHHHHHH---hcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHH
Confidence            47999999999999999999   889999999999999999999999999999988643    79999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      +.++|||++|+||+||+++||++++++|++.++++
T Consensus       190 ~~~aGad~vvvGSai~~a~d~~~~~~~l~~~~~~~  224 (230)
T 1tqj_A          190 VLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE  224 (230)
T ss_dssp             HHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCC--
T ss_pred             HHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998766543

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=99.95  E-value=1.7e-27  Score=175.43  Aligned_cols=112  Identities=80%  Similarity=1.275  Sum_probs=103.1

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCC---CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGAN---PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA   77 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~---~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l   77 (115)
                      +++|++++|+|+++.+++++   +   .+|||++|+++||++||+|.+..+++++++++..+++|+.++||||.+|++++
T Consensus       114 ~~igv~~~p~t~~e~~~~~~---~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~ni~~~  190 (228)
T 1h1y_A          114 MRPGVSLRPGTPVEEVFPLV---EAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVA  190 (228)
T ss_dssp             CEEEEEECTTSCGGGGHHHH---HSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHH
T ss_pred             CCEEEEEeCCCCHHHHHHHH---hcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHH
Confidence            46899999999999999999   7   89999999999999999999999999999999877899999999999999999


Q ss_pred             HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhcC
Q 033625           78 ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS  115 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~~~  115 (115)
                      .++|||++|+||+||+++||++++++|++.+++.+.+|
T Consensus       191 ~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~~~~~~~~  228 (228)
T 1h1y_A          191 ASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS  228 (228)
T ss_dssp             HHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHHC----
T ss_pred             HHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999988766554

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=99.89  E-value=9.6e-24  Score=154.76  Aligned_cols=105  Identities=43%  Similarity=0.748  Sum_probs=96.7

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~~~ni~~   76 (115)
                      +++|++++|+|+.+.++++.   +.+|||++|+++|||+||.|.+..+++++++++..+    ++|+.++||||++|+.+
T Consensus       119 ~~ig~~~~p~t~~e~~~~~~---~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~  195 (230)
T 1rpx_A          119 AKAGVVLNPGTPLTAIEYVL---DAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYK  195 (230)
T ss_dssp             SEEEEEECTTCCGGGGTTTT---TTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHH
T ss_pred             CcEEEEeCCCCCHHHHHHHH---hhCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHH
Confidence            36899999999999999988   889999999999999999999989999998887643    79999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      +.++|||++++||+||+++||.+++++|++.+
T Consensus       196 ~~~aGad~vvvgSaI~~a~dp~~a~~~l~~~~  227 (230)
T 1rpx_A          196 VIEAGANALVAGSAVFGAPDYAEAIKGIKTSK  227 (230)
T ss_dssp             HHHHTCCEEEESHHHHTSSCHHHHHHHHHTCC
T ss_pred             HHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999998644

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=99.89  E-value=3.7e-23  Score=150.08  Aligned_cols=106  Identities=43%  Similarity=0.748  Sum_probs=96.9

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC----CCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY----PSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~----~~~~i~~dGGI~~~ni~~   76 (115)
                      +++|++++|+|+.+.++++.   +.+|||++|+++|||+||.|.+..+++++++++..    .++|+.++|||+++|+++
T Consensus       110 ~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~~~~~  186 (220)
T 2fli_A          110 MKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRA  186 (220)
T ss_dssp             SEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHH
T ss_pred             CcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCCHHHHHH
Confidence            36899999999999999988   88999999999999999999988888888888754    279999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      +.++|||++++||+||+++||++++++|++.++
T Consensus       187 ~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~~~  219 (220)
T 2fli_A          187 CYEAGANVFVAGSYLFKASDLVSQVQTLRTALN  219 (220)
T ss_dssp             HHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHC
T ss_pred             HHHcCCCEEEEChHHhCCCCHHHHHHHHHHHhc
Confidence            999999999999999999999999999987653

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=99.79  E-value=3.1e-20  Score=135.73  Aligned_cols=103  Identities=16%  Similarity=0.294  Sum_probs=89.8

Q ss_pred             ceEE-EecCCCCHHhHHHhHhCCCCCCEEEE-EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH
Q 033625            2 RPGV-ALKPGTSVEEVYPLVEGANPVEMVLV-MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS   79 (115)
Q Consensus         2 k~Gl-al~p~t~~~~~~~~~~~~~~vD~vlv-m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~   79 (115)
                      ++++ .++|.|+ +..+.+.+  .++||+.+ |++.|+++||.+.+..+++|++++.  +++|++++|||+++|++++.+
T Consensus       111 ~~~~d~l~~~T~-~~~~~~~~--~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~~--~~~pi~v~GGI~~~~~~~~~~  185 (218)
T 3jr2_A          111 EIQIEIYGNWTM-QDAKAWVD--LGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSA--LGIELSITGGIVPEDIYLFEG  185 (218)
T ss_dssp             EEEEECCSSCCH-HHHHHHHH--TTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHHH--TTCEEEEESSCCGGGGGGGTT
T ss_pred             ccceeeeecCCH-HHHHHHHH--cCccceeeeeccccccCCCcCCHHHHHHHHHHhC--CCCCEEEECCCCHHHHHHHHH
Confidence            5677 8899997 55565552  38999765 8889999999999999999999875  479999999999999999999


Q ss_pred             cCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        80 ~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +|||++|+||+||+++||.+++ ++++.+++
T Consensus       186 aGAd~vvvGsaI~~a~dp~~a~-~l~~~~~~  215 (218)
T 3jr2_A          186 IKTKTFIAGRALAGAEGQQTAA-ALREQIDR  215 (218)
T ss_dssp             SCEEEEEESGGGSHHHHHHHHH-HHHHHHHH
T ss_pred             cCCCEEEEchhhcCCCCHHHHH-HHHHHHHh
Confidence            9999999999999999999999 99988875

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=99.77  E-value=4.5e-20  Score=134.01  Aligned_cols=103  Identities=16%  Similarity=0.213  Sum_probs=92.4

Q ss_pred             EEEecCCCCHHhHHHh-HhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh--hHHHHHHc
Q 033625            4 GVALKPGTSVEEVYPL-VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASA   80 (115)
Q Consensus         4 Glal~p~t~~~~~~~~-~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~--ni~~l~~~   80 (115)
                      |++++|.|+.+.++++ +   +.+|+++.|+++||++||.+.+...++++++|+..+.-++.+||||+.+  |+.++.++
T Consensus       101 gv~vl~~t~~~~~~~~~~---~~v~~~~~~a~~~G~~G~~~~~~~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~a  177 (208)
T 2czd_A          101 EIIMVVEMSHPGALEFIN---PLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKA  177 (208)
T ss_dssp             EEEEECCCCSGGGGTTTG---GGHHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHH
T ss_pred             CcEEEEecCCcchhhHHH---HHHHHHHHHHHHhCCcEEEECCCChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHc
Confidence            8999999999988776 6   7789999999999999999999888899999887654234599999998  99999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      |||++|+||+||+++||.++++++++.++
T Consensus       178 Gad~vvvGr~I~~a~dp~~~~~~l~~~i~  206 (208)
T 2czd_A          178 GADYIIVGRAIYNAPNPREAAKAIYDEIR  206 (208)
T ss_dssp             TCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEChHHhcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999998764

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=99.76  E-value=2.1e-18  Score=124.34  Aligned_cols=104  Identities=20%  Similarity=0.252  Sum_probs=91.1

Q ss_pred             ceEEE-ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVA-LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Gla-l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++++. ++|.|+.+.++.+.+  .++|+|   .++||++||.+.+..+++++++++..+++|+.++|||+++|+..+.++
T Consensus       105 ~~~v~~~~~~t~~~~~~~~~~--~g~d~i---~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~gGI~~~~~~~~~~~  179 (211)
T 3f4w_A          105 QVVVDMICVDDLPARVRLLEE--AGADML---AVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALL  179 (211)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH--HTCCEE---EEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTT
T ss_pred             eEEEEecCCCCHHHHHHHHHH--cCCCEE---EEcCCCcccccCCCCHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHc
Confidence            56675 678888888888772  369986   467999999987667889999998877899999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      |||.+++||+||+++||.++++++++.+++
T Consensus       180 Gad~vvvGsai~~~~d~~~~~~~l~~~~~~  209 (211)
T 3f4w_A          180 GPDVVIVGSAITHAADPAGEARKISQVLLQ  209 (211)
T ss_dssp             CCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEECHHHcCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999988775

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=99.71  E-value=8.2e-18  Score=120.95  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             ceEEEec-CCCCHHhHHHhHhCCCCCCEE-EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH
Q 033625            2 RPGVALK-PGTSVEEVYPLVEGANPVEMV-LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS   79 (115)
Q Consensus         2 k~Glal~-p~t~~~~~~~~~~~~~~vD~v-lvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~   79 (115)
                      ++|+++. ++||-+.++.+.+  .++||| +.|++.|++.|+++.+   +++++++..  ++|+.++|||+++|++++.+
T Consensus       105 ~~gv~~~s~~~p~~~~~~~~~--~g~d~v~~~~~~~~~~~g~~~~~---~~i~~~~~~--~~pi~v~GGI~~~~~~~~~~  177 (207)
T 3ajx_A          105 GVVVDLIGIEDKATRAQEVRA--LGAKFVEMHAGLDEQAKPGFDLN---GLLAAGEKA--RVPFSVAGGVKVATIPAVQK  177 (207)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH--TTCSEEEEECCHHHHTSTTCCTH---HHHHHHHHH--TSCEEEESSCCGGGHHHHHH
T ss_pred             ceEEEEecCCChHHHHHHHHH--hCCCEEEEEecccccccCCCchH---HHHHHhhCC--CCCEEEECCcCHHHHHHHHH
Confidence            4677663 4455554444431  358999 8888888888988765   778888765  68999999999999999999


Q ss_pred             cCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        80 ~Gad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      +|||++++||+||+++||.++++++++.
T Consensus       178 aGad~vvvGsaI~~~~dp~~~~~~~~~~  205 (207)
T 3ajx_A          178 AGAEVAVAGGAIYGAADPAAAAKELRAA  205 (207)
T ss_dssp             TTCSEEEESHHHHTSSSHHHHHHHHHHT
T ss_pred             cCCCEEEEeeeccCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999864

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=99.68  E-value=2.9e-18  Score=127.76  Aligned_cols=107  Identities=19%  Similarity=0.182  Sum_probs=88.3

Q ss_pred             EEEecCCCCH--HhH-HHh---HhCCCCCCEEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh----
Q 033625            4 GVALKPGTSV--EEV-YPL---VEGANPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS----   72 (115)
Q Consensus         4 Glal~p~t~~--~~~-~~~---~~~~~~vD~vlvm~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~----   72 (115)
                      +++++|.|+.  +.+ +++   +   +..|+|+.|++. |+++++.|.....+ ++++|+..+..++.+||||+++    
T Consensus       117 ~lav~~~Ts~~~~~l~~~~~~~~---~~~d~Vl~ma~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~V~gGI~~~g~~~  192 (246)
T 2yyu_A          117 CIAVTQLTSTDERMLHEELWISR---PLVETVAHYAALAKESGLDGVVCSANE-AAFIKERCGASFLAVTPGIRFADDAA  192 (246)
T ss_dssp             EEEESSCTTCCHHHHHHTSCCCS---CHHHHHHHHHHHHHHHTCCEEECCHHH-HHHHHHHHCTTSEEEECCCCCCC---
T ss_pred             EEEEEeCCCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHhCCCEEEeCHHH-HHHHHHhcCCCCEEEeCCcCCCCCCc
Confidence            5889999995  777 665   3   557999999886 88888889888877 8888877544449999999999    


Q ss_pred             -------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 033625           73 -------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN  114 (115)
Q Consensus        73 -------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~~  114 (115)
                             |+.++.++|+|++|+||+||+++||.++++++++.++++++.
T Consensus       193 ~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~~~~~~  241 (246)
T 2yyu_A          193 HDQVRVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWNGGERE  241 (246)
T ss_dssp             ----CCCCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHCC-----
T ss_pred             ccccccCCHHHHHHcCCCEEEECHhhcCCCCHHHHHHHHHHHHHHHHhc
Confidence                   999999999999999999999999999999999988766543

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=99.67  E-value=1.5e-16  Score=118.87  Aligned_cols=100  Identities=14%  Similarity=0.081  Sum_probs=82.5

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      +.+|+.|..+...   .++|||.+++++|..+.+...+..++.++++++.. .++|++++||||++|+.++.++|||.++
T Consensus       141 S~ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~aGa~gva  217 (243)
T 3o63_A          141 STHDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLDAGARRIV  217 (243)
T ss_dssp             EECSHHHHHHHHH---SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHHTTCCCEE
T ss_pred             eCCCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHHcCCCEEE
Confidence            4577777666555   78999999999998877665566788899888763 4799999999999999999999999999


Q ss_pred             EcccccCCCCHHHHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +||+||+++||.+++++|++.+++
T Consensus       218 v~sai~~a~dp~~a~~~l~~~~~~  241 (243)
T 3o63_A          218 VVRAITSADDPRAAAEQLRSALTA  241 (243)
T ss_dssp             ESHHHHTCSSHHHHHHHHHHHHHT
T ss_pred             EeHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999988765

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=99.66  E-value=1.7e-16  Score=116.86  Aligned_cols=105  Identities=15%  Similarity=0.256  Sum_probs=82.4

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEE-EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLV-MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlv-m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|++++++|+.+.++++++  ..+|++.+ |+..++++|+-..+.-++++++...  ++++|+|||||+++|.+.+.++
T Consensus       113 ~~~Vt~lts~~~~~~~~~~~--~~~~~~v~~~a~~~~~~Gvv~s~~e~~~ir~~~~--~~~~i~v~gGI~~~~~~~~~~a  188 (221)
T 3exr_A          113 EIQVELYGDWTYDQAQQWLD--AGISQAIYHQSRDALLAGETWGEKDLNKVKKLIE--MGFRVSVTGGLSVDTLKLFEGV  188 (221)
T ss_dssp             EEEEECCSSCCHHHHHHHHH--TTCCEEEEECCHHHHHHTCCCCHHHHHHHHHHHH--HTCEEEEESSCCGGGGGGGTTC
T ss_pred             eEEEEEcCCCCHHHHHHHHc--CCHHHHHHHHHHhcCCCccccCHHHHHHHHHhhc--CCceEEEECCCCHHHHHHHHHC
Confidence            57999999999999888872  26766544 5555555665433333444444332  3688999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      |||++|+||+||+++||.++++++++.+++
T Consensus       189 Gad~~VvG~~I~~a~dp~~a~~~~~~~~~~  218 (221)
T 3exr_A          189 DVFTFIAGRGITEAKNPAGAARAFKDEIKR  218 (221)
T ss_dssp             CCSEEEECHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEECchhhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988875

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=99.66  E-value=2.3e-17  Score=120.17  Aligned_cols=99  Identities=13%  Similarity=0.178  Sum_probs=78.2

Q ss_pred             ceEEEec-C--CCCHHhHHHhHhCCCCCCEEE---EEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhH
Q 033625            2 RPGVALK-P--GTSVEEVYPLVEGANPVEMVL---VMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTI   74 (115)
Q Consensus         2 k~Glal~-p--~t~~~~~~~~~~~~~~vD~vl---vm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni   74 (115)
                      ++|+.+. +  .|+.+.++++    ...|+++   .|+++|||+|      ..++++++|+..+ ++|+.++|||+++|+
T Consensus       108 ~~~~~ll~~~t~~~~~~l~~~----~~~~~vl~~a~~~~~~G~~g------~~~~i~~lr~~~~~~~~i~v~GGI~~~~~  177 (216)
T 1q6o_A          108 DVQIELTGYWTWEQAQQWRDA----GIGQVVYHRSRDAQAAGVAW------GEADITAIKRLSDMGFKVTVTGGLALEDL  177 (216)
T ss_dssp             EEEEEECSCCCHHHHHHHHHT----TCCEEEEECCHHHHHTTCCC------CHHHHHHHHHHHHTTCEEEEESSCCGGGG
T ss_pred             CceeeeeeCCChhhHHHHHhc----CcHHHHHHHHHHHHhcCCCC------CHHHHHHHHHhcCCCCcEEEECCcChhhH
Confidence            4566344 4  4555555442    4567888   8899999998      3455666665543 688999999999999


Q ss_pred             HHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           75 AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        75 ~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      .++.++|||++|+||+||+++||.++++++++.+++
T Consensus       178 ~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~~  213 (216)
T 1q6o_A          178 PLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE  213 (216)
T ss_dssp             GGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988765

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.64  E-value=2.4e-16  Score=116.20  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=83.3

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCC-EEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVE-MVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEA   77 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD-~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l   77 (115)
                      ++++.++|.|+.+.++.+.   ..+| ++.+|++ ||++|++  +.+..++.++++++.. ++|+.++|||+. +|+..+
T Consensus       135 ~~~~~i~~~t~~e~~~~~~---~~~d~~i~~~~~-~G~~g~~~~~~~~~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~  209 (248)
T 1geq_A          135 KTVFLAAPNTPDERLKVID---DMTTGFVYLVSL-YGTTGAREEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSL  209 (248)
T ss_dssp             EEEEEECTTCCHHHHHHHH---HHCSSEEEEECC-C-------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHH
T ss_pred             CeEEEECCCCHHHHHHHHH---hcCCCeEEEEEC-CccCCCCCCCChhHHHHHHHHHhhc-CCCEEEEeecCCHHHHHHH
Confidence            5788999999999999998   6678 9988999 9998886  6677889999999875 799999999999 999999


Q ss_pred             HHcCCCEEEEcccccCCC--CHHHHHHHHHHHHHHHh
Q 033625           78 ASAGANCIVAGSSVFGAP--EPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~--d~~~~~~~l~~~~~~~~  112 (115)
                      .++|||.+++||+||+..  ++ ++++++.+.+++..
T Consensus       210 ~~~Gad~vivGsai~~~~~~~~-~~~~~~~~~~~~~~  245 (248)
T 1geq_A          210 LKEGANGVVVGSALVKIIGEKG-REATEFLKKKVEEL  245 (248)
T ss_dssp             HHTTCSEEEECHHHHHHHHHHG-GGCHHHHHHHHHHH
T ss_pred             HHcCCCEEEEcHHHHhhHhhCh-HHHHHHHHHHHHHh
Confidence            999999999999999752  34 56666666555543

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=99.64  E-value=1.2e-17  Score=124.48  Aligned_cols=105  Identities=17%  Similarity=0.230  Sum_probs=85.8

Q ss_pred             EEEecC--CCCHHhHHHhHhCCCCCCEEEEEee-eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh--------
Q 033625            4 GVALKP--GTSVEEVYPLVEGANPVEMVLVMTV-EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS--------   72 (115)
Q Consensus         4 Glal~p--~t~~~~~~~~~~~~~~vD~vlvm~v-~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~--------   72 (115)
                      ++++++  +++.+.++++..+.+..|+|+.|++ .|+++++.|....++ ++++|+..++.++.+||||+++        
T Consensus       124 ~l~v~~~ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~~e-i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~  202 (245)
T 1eix_A          124 LIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQE-AVRFKQVFGQEFKLVTPGIRPQGSEAGDQR  202 (245)
T ss_dssp             EEEECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGG-HHHHHHHHCSSSEEEECCBCCTTCCCTTCC
T ss_pred             EEEEEecCCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCHHH-HHHHHHhcCCCCEEEECCcCCCCCCccchh
Confidence            445554  5555888876100156799999988 788888889888877 8888877655689999999999        


Q ss_pred             ---hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           73 ---TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        73 ---ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                         |+.++.++|+|++|+||+||+++||.++++++++.++
T Consensus       203 rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~  242 (245)
T 1eix_A          203 RIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ  242 (245)
T ss_dssp             SCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHTC
T ss_pred             ccCCHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHH
Confidence               9999999999999999999999999999999987654

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=99.64  E-value=8.6e-16  Score=111.42  Aligned_cols=104  Identities=16%  Similarity=0.139  Sum_probs=85.8

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      .++++|+.+..+.+.   .++||++++++.|+++++. +.+..++.++++++..+++|+.++|||+++|+.++.++|+|.
T Consensus       120 ~~s~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~~~nv~~~~~~Ga~g  196 (227)
T 2tps_A          120 GVSAHTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADG  196 (227)
T ss_dssp             EEEECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSE
T ss_pred             EEecCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHcCCCE
Confidence            345677777555444   6899999999999877655 455567788888876545999999999999999999999999


Q ss_pred             EEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           85 IVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        85 iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      +++||++|+++|+.+.++++++.++.++
T Consensus       197 v~vgs~i~~~~d~~~~~~~~~~~~~~~~  224 (227)
T 2tps_A          197 VSMISAISQAEDPESAARKFREEIQTYK  224 (227)
T ss_dssp             EEESHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEhHHhhcCCCHHHHHHHHHHHHHhcc
Confidence            9999999998999999999998887654

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=99.63  E-value=1.8e-17  Score=122.87  Aligned_cols=106  Identities=20%  Similarity=0.223  Sum_probs=86.4

Q ss_pred             EEEec--CCCCHHhH-HHh-HhCCCCCCEEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhH----
Q 033625            4 GVALK--PGTSVEEV-YPL-VEGANPVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTI----   74 (115)
Q Consensus         4 Glal~--p~t~~~~~-~~~-~~~~~~vD~vlvm~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni----   74 (115)
                      ++++.  ++++.+.+ +++ +.. +..|+|+.|++. |+++++.|.... ++++++|+..++.++.+||||++++.    
T Consensus       116 ~~~V~~~ts~~~~~l~~~~~~~~-~~~d~Vl~ma~~~~~~G~~g~v~~~-~~i~~lr~~~~~~~i~v~gGI~~~~~~~~d  193 (239)
T 1dbt_A          116 LIAVTQLTSTSEQIMKDELLIEK-SLIDTVVHYSKQAEESGLDGVVCSV-HEAKAIYQAVSPSFLTVTPGIRMSEDAAND  193 (239)
T ss_dssp             EEEECSCTTCCHHHHHHTSCBCS-CHHHHHHHHHHHHHHTTCSEEECCG-GGHHHHTTTSCTTCEEEECCBCCTTSCCTT
T ss_pred             EEEEEEcCCCCHHHHHHHhccCC-CHHHHHHHHHHHHHHhCCCEEEECH-HHHHHHHHhcCCCcEEEeCCcCCCCCCccc
Confidence            45555  45555777 665 421 347999999886 888888888776 78899988765578999999999998    


Q ss_pred             -------HHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           75 -------AEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        75 -------~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                             .++.++|+|++|+||+||+++||.++++++++.+++.
T Consensus       194 q~rv~tp~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~~~  237 (239)
T 1dbt_A          194 QVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGI  237 (239)
T ss_dssp             CSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHHTC
T ss_pred             eeccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHHHh
Confidence                   8999999999999999999999999999999887643

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=99.63  E-value=3.3e-15  Score=108.59  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=79.9

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      ++|+.+  +|+.+..+...   .++|||+++++.++.......+..++.++++++.. ++|+.++||||++|+.++.++|
T Consensus       112 ~ig~sv--~t~~~~~~a~~---~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI~~~nv~~~~~~G  185 (221)
T 1yad_A          112 HIGRSV--HSLEEAVQAEK---EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGMTPDRLRDVKQAG  185 (221)
T ss_dssp             EEEEEE--CSHHHHHHHHH---TTCSEEEEECCC----------CHHHHHHHHHHHC-CSCEEEESSCCGGGHHHHHHTT
T ss_pred             EEEEEc--CCHHHHHHHHh---CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCCCHHHHHHHHHcC
Confidence            456655  46666666555   78999999887554221111245678888887765 7999999999999999999999


Q ss_pred             CCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           82 ANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        82 ad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      ||++++||++|+++|+.+.++++++.++...
T Consensus       186 a~gv~vgs~i~~~~d~~~~~~~~~~~~~~~~  216 (221)
T 1yad_A          186 ADGIAVMSGIFSSAEPLEAARRYSRKLKEMR  216 (221)
T ss_dssp             CSEEEESHHHHTSSSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEhHHhhCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998887654

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=99.63  E-value=1.7e-15  Score=108.78  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=81.4

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      .++|+.+..+.+.   .++|||+++++.|+.+++.+.+..++.++++++.. ++|+.++|||+++|+.++.++|+|.+++
T Consensus       114 ~~~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~pvia~GGI~~~nv~~~~~~Ga~gv~v  189 (215)
T 1xi3_A          114 SVYSLEEALEAEK---KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGIAV  189 (215)
T ss_dssp             EESSHHHHHHHHH---HTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEEEE
T ss_pred             ecCCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC-CCCEEEECCcCHHHHHHHHHcCCCEEEE
Confidence            3467766555444   68999999998888766656667788888888765 7999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      ||++|+.+|+.+.++++++.+++.
T Consensus       190 gs~i~~~~d~~~~~~~~~~~~~~~  213 (215)
T 1xi3_A          190 ISAVMGAEDVRKATEELRKIVEEV  213 (215)
T ss_dssp             SHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             hHHHhCCCCHHHHHHHHHHHHhhc
Confidence            999999999999999999887754

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=99.55  E-value=2.3e-14  Score=106.80  Aligned_cols=104  Identities=14%  Similarity=0.300  Sum_probs=83.2

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA   78 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~   78 (115)
                      +..+.++|+|+.+.++.+...  ..+|+.++++ +|++|+  .+.+..++.++++++.. ++||.++|||+ ++|+..+.
T Consensus       145 ~~i~~~a~~t~~e~~~~~~~~--~~g~v~~~s~-~G~tG~~~~~~~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~  220 (262)
T 1rd5_A          145 ELVLLTTPAIPEDRMKEITKA--SEGFVYLVSV-NGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIA  220 (262)
T ss_dssp             EECEEECTTSCHHHHHHHHHH--CCSCEEEECS-SCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHhc--CCCeEEEecC-CCCCCCCcCCCchHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHH
Confidence            356778999999988887733  3368988886 899988  66677888999998875 79999999999 99999999


Q ss_pred             HcCCCEEEEcccccCC----CCHHHHHHHHHHHHH
Q 033625           79 SAGANCIVAGSSVFGA----PEPAHVISLMRKSVE  109 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~----~d~~~~~~~l~~~~~  109 (115)
                      ++|||.+++||+|++.    .++.+....+++.++
T Consensus       221 ~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~~  255 (262)
T 1rd5_A          221 QWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYAR  255 (262)
T ss_dssp             HTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEChHHHhHHHhccChhHHHHHHHHHHH
Confidence            9999999999999964    245554445555444

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=99.52  E-value=5.3e-14  Score=105.72  Aligned_cols=105  Identities=15%  Similarity=0.233  Sum_probs=80.7

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA   78 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~   78 (115)
                      +.+..++|+|+.+.++.+...  .-+++.+|++. |++||  ++.+...++++++|+.. ++|+.++|||+ ++++..+.
T Consensus       149 ~~i~l~~p~t~~~~i~~i~~~--~~g~v~~~s~~-G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~  224 (268)
T 1qop_A          149 APIFICPPNADDDLLRQVASY--GRGYTYLLSRS-GVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAV  224 (268)
T ss_dssp             EEECEECTTCCHHHHHHHHHH--CCSCEEEESSS-SCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHhh--CCCcEEEEecC-CcCCCccCCCchHHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHH
Confidence            456778999999998888843  23478888777 99998  66777888999999875 79999999998 99999988


Q ss_pred             HcCCCEEEEcccccCC-----CCHHHHHHHHHHHHHH
Q 033625           79 SAGANCIVAGSSVFGA-----PEPAHVISLMRKSVED  110 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~~-----~d~~~~~~~l~~~~~~  110 (115)
                      .+|||++|+||+|++.     .++.....++++.+++
T Consensus       225 ~agAD~vVVGSai~~~~~~~~~~~~~~~~~~~~~~~~  261 (268)
T 1qop_A          225 RAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSA  261 (268)
T ss_dssp             HTTCSEEEECHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEChHHhhhHhhcccCchHHHHHHHHHHHH
Confidence            9999999999999864     2334334445544443

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=99.50  E-value=4.6e-14  Score=115.51  Aligned_cols=103  Identities=17%  Similarity=0.108  Sum_probs=83.5

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCC---CCEEEEEeeeCCCCCccc--chhHHHHHHHHHhh-----CCCCcEEEEcCCChh
Q 033625            3 PGVALKPGTSVEEVYPLVEGANP---VEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNR-----YPSLDIEVDGGLGPS   72 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~---vD~vlvm~v~pG~~gq~~--~~~~~~ki~~l~~~-----~~~~~i~~dGGI~~~   72 (115)
                      +|+..  +|+.|..+...   .+   +|||.+++++|..+++..  .+..++.++++++.     ..++|++++|||+++
T Consensus       111 iG~S~--ht~eea~~A~~---~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~  185 (540)
T 3nl6_A          111 IGWSV--GFPEEVDELSK---MGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHPD  185 (540)
T ss_dssp             EEEEE--CSHHHHHHHHH---TCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCTT
T ss_pred             EEEEC--CCHHHHHHHHH---cCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCHH
Confidence            45555  46666666655   67   999999999999888765  34556667666654     247999999999999


Q ss_pred             hHHHHHH--------cCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           73 TIAEAAS--------AGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        73 ni~~l~~--------~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      |++++.+        +|+|+++++|+||+++||.+++++|++.+++
T Consensus       186 ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~  231 (540)
T 3nl6_A          186 NIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDK  231 (540)
T ss_dssp             THHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHh
Confidence            9999997        8999999999999999999999999998875

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=99.44  E-value=4.2e-13  Score=96.77  Aligned_cols=91  Identities=20%  Similarity=0.270  Sum_probs=75.6

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      ++|+.+..+...   .++|||++   +|+   +   +..+++++++++..+ ++|+.++|||+.+|+.++.++|||.+++
T Consensus       108 ~~t~~e~~~a~~---~G~d~v~v---~~t---~---~~g~~~~~~l~~~~~~~ipvia~GGI~~~~i~~~~~~Ga~gv~v  175 (212)
T 2v82_A          108 CATATEAFTALE---AGAQALKI---FPS---S---AFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGL  175 (212)
T ss_dssp             ECSHHHHHHHHH---TTCSEEEE---TTH---H---HHCHHHHHHHHTTSCTTCEEEEESSCCTTTHHHHHHHTCSEEEE
T ss_pred             cCCHHHHHHHHH---CCCCEEEE---ecC---C---CCCHHHHHHHHHhccCCCeEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence            567777766666   78999985   553   2   345688888888765 6999999999999999999999999999


Q ss_pred             cccccCC----CCHHHHHHHHHHHHHHH
Q 033625           88 GSSVFGA----PEPAHVISLMRKSVEDA  111 (115)
Q Consensus        88 Gsaif~~----~d~~~~~~~l~~~~~~~  111 (115)
                      ||++|++    +||.+.+++|++.+++.
T Consensus       176 Gsai~~~~~~~~d~~~~~~~l~~~~~~~  203 (212)
T 2v82_A          176 GSDLYRAGQSVERTAQQAAAFVKAYREA  203 (212)
T ss_dssp             CTTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999997    68999999999888763

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.37  E-value=9.4e-13  Score=96.18  Aligned_cols=96  Identities=13%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             EEEecCCCCHHhHHHhHhCCCCCCEE--EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc
Q 033625            4 GVALKPGTSVEEVYPLVEGANPVEMV--LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA   80 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~vD~v--lvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~   80 (115)
                      .+.++++|+.+....+.   .++|+|  .+++++|++  +.+....++.++++++.  ++|+.++|||+ .+++..+.++
T Consensus       135 ~v~~~~~t~~ea~~a~~---~Gad~i~~~v~g~~~~~--~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~  207 (234)
T 1yxy_A          135 LLMADISTFDEGLVAHQ---AGIDFVGTTLSGYTPYS--RQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDL  207 (234)
T ss_dssp             EEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTS--CCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTT
T ss_pred             eEEEeCCCHHHHHHHHH---cCCCEEeeeccccCCCC--cCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHC
Confidence            45667888877766666   789999  788888765  33334456778888765  79999999999 9999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      |||.+++||++|+   |...+++|++.++
T Consensus       208 Gad~v~vGsal~~---p~~~~~~l~~~~~  233 (234)
T 1yxy_A          208 GVAGIVVGGAITR---PKEIAERFIEALK  233 (234)
T ss_dssp             CCSEEEECHHHHC---HHHHHHHHHHHTC
T ss_pred             CCCEEEEchHHhC---hHHHHHHHHHHHh
Confidence            9999999999997   8888888877653

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=99.33  E-value=5.3e-12  Score=90.39  Aligned_cols=65  Identities=14%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCC---HHHHHHHHHHHHHHH
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE---PAHVISLMRKSVEDA  111 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d---~~~~~~~l~~~~~~~  111 (115)
                      ...+.++++++..+++|+.++|||+.+|+.++.++|||.+++||++|+ +|   +.+.++++++.+++.
T Consensus       136 ~g~~~~~~l~~~~~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~~-~d~~~~~~~~~~~~~~~~~~  203 (205)
T 1wa3_A          136 VGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKAFVEKIRGC  203 (205)
T ss_dssp             HHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC-SCHHHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHhCCCCcEEEcCCCCHHHHHHHHHCCCCEEEECccccC-CCHHHHHHHHHHHHHHHHhh
Confidence            345667777766668999999999999999999999999999999999 89   889999888887653

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.31  E-value=1.1e-11  Score=89.66  Aligned_cols=94  Identities=12%  Similarity=0.185  Sum_probs=73.4

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc----chhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHc
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF----MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASA   80 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~----~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~   80 (115)
                      .+++.|+.+..+...   .++|+|.  ..++||+++.+    ....++.++++++.. ++|+.++||| |.+++..+.++
T Consensus       123 ~~~~~t~~e~~~~~~---~G~d~i~--~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~  196 (223)
T 1y0e_A          123 MADIATVEEAKNAAR---LGFDYIG--TTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDL  196 (223)
T ss_dssp             EEECSSHHHHHHHHH---TTCSEEE--CTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHT
T ss_pred             EecCCCHHHHHHHHH---cCCCEEE--eCCCcCcCCCCCCCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHc
Confidence            457778777655444   6799974  56778887765    334566777877764 7999999999 99999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      |||.+++||+||+   +....++|++.+
T Consensus       197 Gad~v~vG~al~~---p~~~~~~~~~~~  221 (223)
T 1y0e_A          197 GVHCSVVGGAITR---PKEITKRFVQVM  221 (223)
T ss_dssp             TCSEEEECHHHHC---HHHHHHHHHHTT
T ss_pred             CCCEEEEChHHcC---cHHHHHHHHHHh
Confidence            9999999999997   777777776544

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=99.25  E-value=2.4e-11  Score=88.37  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      ...|+-|..+..-   .++|||.+   +|.   ...  ..++.+++++...+++|+.+.||||.+|+.++.++|++.+++
T Consensus       110 G~~t~~e~~~A~~---~Gad~v~~---fpa---~~~--gG~~~lk~l~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav  178 (207)
T 2yw3_A          110 GVLTPTEVERALA---LGLSALKF---FPA---EPF--QGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVG  178 (207)
T ss_dssp             EECSHHHHHHHHH---TTCCEEEE---TTT---TTT--THHHHHHHHHHHCTTCEEEEBSSCCGGGHHHHHTCSSBSCEE
T ss_pred             cCCCHHHHHHHHH---CCCCEEEE---ecC---ccc--cCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHhCCCcEEEE
Confidence            4567666666655   78999976   552   111  145668888888789999999999999999999999999999


Q ss_pred             cccccCCCC---HHHHHHHHHHHH
Q 033625           88 GSSVFGAPE---PAHVISLMRKSV  108 (115)
Q Consensus        88 Gsaif~~~d---~~~~~~~l~~~~  108 (115)
                      ||+||+ +|   +.+.++++.+.+
T Consensus       179 gSai~~-~d~~~i~~~a~~~~~~~  201 (207)
T 2yw3_A          179 GSWLLQ-GNLEAVRAKVRAAKALL  201 (207)
T ss_dssp             ESGGGS-SCHHHHHHHHHHHHHHC
T ss_pred             ehhhhC-CCHHHHHHHHHHHHHHh
Confidence            999998 88   566666665544

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.25  E-value=3.8e-12  Score=92.26  Aligned_cols=77  Identities=9%  Similarity=0.123  Sum_probs=56.5

Q ss_pred             CCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      .++|||.+.++.|..+.... .+..++.++++++.. .++|+.+.|||+++|+.++.++|++.+.++|+||+.+|+.+.
T Consensus       106 ~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~~~nv~~~~~~Ga~gVav~s~i~~~~d~~~~  184 (210)
T 3ceu_A          106 HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGINEDNLLEIKDFGFGGAVVLGDLWNKFDACLD  184 (210)
T ss_dssp             GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCCTTTHHHHHHTTCSEEEESHHHHTTCCTTTS
T ss_pred             hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhCCCEEEEhHHhHcCCCHHHH
Confidence            46999999888765432111 122445567776653 479999999999999999999999999999999998888533

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=99.22  E-value=5.3e-11  Score=89.88  Aligned_cols=105  Identities=13%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCC-CEEEEEeeeCCCCCcc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA   78 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~v-D~vlvm~v~pG~~gq~-~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~   78 (115)
                      +....++|.|+.+.++.+.   ... ++|.++++.+.++.+. +.+...+.++++|+.. +.|+.+.|||+ +++++...
T Consensus       150 ~~i~liaP~t~~eri~~i~---~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~-~~pv~vGfGI~~~e~~~~~~  225 (267)
T 3vnd_A          150 APIFIAPPNADADTLKMVS---EQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN-APPPLLGFGIAEPEQVRAAI  225 (267)
T ss_dssp             EEECEECTTCCHHHHHHHH---HHCCSCEEESCCCCCC--------CHHHHHHHHHTTT-CCCEEECSSCCSHHHHHHHH
T ss_pred             eEEEEECCCCCHHHHHHHH---HhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHH
Confidence            3556789999999999988   544 5888888887666664 5666778899998874 79999999995 99999888


Q ss_pred             HcCCCEEEEcccccC-----CCCHHHHHHHHHHHHHH
Q 033625           79 SAGANCIVAGSSVFG-----APEPAHVISLMRKSVED  110 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~-----~~d~~~~~~~l~~~~~~  110 (115)
                      ..|||++|+||+|++     .+++.+..+.+++..++
T Consensus       226 ~~gADgvVVGSaiv~~i~~~~~~~~~~~~~~~~~~~~  262 (267)
T 3vnd_A          226 KAGAAGAISGSAVVKIIEAHQHDEATLLAKLAEFTTA  262 (267)
T ss_dssp             HTTCSEEEECHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HcCCCEEEECHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            999999999999986     12455555566555443

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.21  E-value=2.3e-11  Score=89.19  Aligned_cols=97  Identities=12%  Similarity=0.152  Sum_probs=69.4

Q ss_pred             ceEEEecCC--------------CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc
Q 033625            2 RPGVALKPG--------------TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG   67 (115)
Q Consensus         2 k~Glal~p~--------------t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG   67 (115)
                      ++++++++.              |+++..+.+.+  .++|.|+++++.+++.+|.+..+.   ++++++.. ++|+.++|
T Consensus       124 ~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~---~~~i~~~~-~ipvia~G  197 (244)
T 1vzw_A          124 KIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLEL---LKNVCAAT-DRPVVASG  197 (244)
T ss_dssp             GEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHH--TTCCCEEEEEC-------CCCHHH---HHHHHHTC-SSCEEEES
T ss_pred             cEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHH---HHHHHHhc-CCCEEEEC
Confidence            356777765              77787777762  369999999999988777775444   55555543 79999999


Q ss_pred             CCCh-hhHHHHHHc---CCCEEEEcccccCCC-CHHHHHHHH
Q 033625           68 GLGP-STIAEAASA---GANCIVAGSSVFGAP-EPAHVISLM  104 (115)
Q Consensus        68 GI~~-~ni~~l~~~---Gad~iv~Gsaif~~~-d~~~~~~~l  104 (115)
                      ||+. +++..+.++   |+|.+++||++|+.+ ++.+..+.+
T Consensus       198 GI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~~  239 (244)
T 1vzw_A          198 GVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT  239 (244)
T ss_dssp             CCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHHh
Confidence            9995 999999999   999999999999876 555555443

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.17  E-value=1.9e-10  Score=84.48  Aligned_cols=90  Identities=19%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ++++.++.+.+  .++|.|+++++.++...+.+.   ++.++++++.. ++|+.+.|||+ ++++..+.++|+|.+++||
T Consensus       152 ~~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~---~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vGs  225 (253)
T 1thf_D          152 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYD---TEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAAS  225 (253)
T ss_dssp             EHHHHHHHHHH--TTCSEEEEEETTTTTSCSCCC---HHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred             CHHHHHHHHHH--CCCCEEEEEeccCCCCCCCCC---HHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHHHH
Confidence            45676777662  469999999999887666664   44566666654 79999999999 5999999999999999999


Q ss_pred             cccCCC-CHHHHHHHHHH
Q 033625           90 SVFGAP-EPAHVISLMRK  106 (115)
Q Consensus        90 aif~~~-d~~~~~~~l~~  106 (115)
                      ++++.+ ++.+..+.+++
T Consensus       226 al~~~~~~~~~~~~~l~~  243 (253)
T 1thf_D          226 VFHFREIDVRELKEYLKK  243 (253)
T ss_dssp             HHHTTCSCHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHH
Confidence            999887 88888777654

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=99.14  E-value=7e-11  Score=89.31  Aligned_cols=65  Identities=18%  Similarity=0.346  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHhhCCCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           45 PEMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +..+++++++++.. ++|+.  ++||| |.+++..+.++|||.+++||+||+++||.+.+++|++.+++
T Consensus       193 ~~~~~~i~~l~~~~-~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~  260 (297)
T 2zbt_A          193 GAPFELVKWVHDHG-RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAH  260 (297)
T ss_dssp             TCCHHHHHHHHHHS-SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHhc-CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence            34567788888764 67776  99999 99999999999999999999999999999999999988764

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=99.12  E-value=2.9e-10  Score=82.48  Aligned_cols=89  Identities=20%  Similarity=0.270  Sum_probs=69.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      |+.+.++.+.+  .++|+|+++++.|++.++.+.   ++.++++++.. ++|+.++|||+ .+++.++.++|||.+++||
T Consensus       155 ~~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~---~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgs  228 (253)
T 1h5y_A          155 DAVKWAKEVEE--LGAGEILLTSIDRDGTGLGYD---VELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAAS  228 (253)
T ss_dssp             EHHHHHHHHHH--HTCSEEEEEETTTTTTCSCCC---HHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred             CHHHHHHHHHh--CCCCEEEEecccCCCCcCcCC---HHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHH
Confidence            56677777661  369999999999987777764   45566666654 79999999999 5999999999999999999


Q ss_pred             cccCCC-CHHHHHHHHH
Q 033625           90 SVFGAP-EPAHVISLMR  105 (115)
Q Consensus        90 aif~~~-d~~~~~~~l~  105 (115)
                      ++|+.+ ++.+..+.++
T Consensus       229 al~~~~~~~~~~~~~l~  245 (253)
T 1h5y_A          229 LFHFRVLSIAQVKRYLK  245 (253)
T ss_dssp             HHHTTSSCHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHH
Confidence            999876 4454444443

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=99.07  E-value=6.3e-10  Score=83.42  Aligned_cols=85  Identities=24%  Similarity=0.350  Sum_probs=64.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|||+.+....|.. +...  ..+.++++++. .++|+.+.|||+ ++++.++.++|||.+++||+|++++|+.+.++
T Consensus       146 ~gad~v~~~~~~~Gt~-~~~~--~~~~l~~i~~~-~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~  221 (264)
T 1xm3_A          146 LGVHAIMPGASPIGSG-QGIL--NPLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMAR  221 (264)
T ss_dssp             HTCSCBEECSSSTTCC-CCCS--CHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHH
T ss_pred             hCCCEEEECCcccCCC-CCCC--CHHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHH
Confidence            4789984332222321 1111  24456666664 489999999996 99999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 033625          103 LMRKSVEDAQ  112 (115)
Q Consensus       103 ~l~~~~~~~~  112 (115)
                      +|++.++..+
T Consensus       222 ~l~~~v~~~~  231 (264)
T 1xm3_A          222 AMKLAVEAGR  231 (264)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887543

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=99.05  E-value=6.1e-10  Score=82.06  Aligned_cols=76  Identities=9%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH-cCCCEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS-AGANCIV   86 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~-~Gad~iv   86 (115)
                      ...||-|..+.+-   .++|||.+   +|   .+..  ...+.+++++...+++|+.+.||||++|++++.+ .|+++++
T Consensus       125 G~~t~~e~~~A~~---~Gad~vk~---FP---a~~~--~G~~~lk~i~~~~~~ipvvaiGGI~~~N~~~~l~~~Ga~~v~  193 (225)
T 1mxs_A          125 GISTPSEIMMGYA---LGYRRFKL---FP---AEIS--GGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVG  193 (225)
T ss_dssp             EECSHHHHHHHHT---TTCCEEEE---TT---HHHH--THHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHSTTBCCEE
T ss_pred             eeCCHHHHHHHHH---CCCCEEEE---cc---Cccc--cCHHHHHHHHhhCCCCeEEEECCCCHHHHHHHHhccCCEEEE
Confidence            3566666655554   78999986   55   1111  1366788888887899999999999999999999 7999999


Q ss_pred             EcccccCCC
Q 033625           87 AGSSVFGAP   95 (115)
Q Consensus        87 ~Gsaif~~~   95 (115)
                       ||+||+++
T Consensus       194 -gSai~~~~  201 (225)
T 1mxs_A          194 -TTWMLDSS  201 (225)
T ss_dssp             -ECTTSCHH
T ss_pred             -EchhcCch
Confidence             99999844

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.04  E-value=3.4e-10  Score=82.68  Aligned_cols=85  Identities=11%  Similarity=0.142  Sum_probs=66.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHc---CCCEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASA---GANCIV   86 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~---Gad~iv   86 (115)
                      |+++.++.+.+  .++|.|+++++.+++.++.+..   +.++++++. .++|+.++|||+. +++..+.++   |+|.++
T Consensus       150 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~---~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~  223 (244)
T 2y88_A          150 DLWDVLERLDS--EGCSRFVVTDITKDGTLGGPNL---DLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAI  223 (244)
T ss_dssp             EHHHHHHHHHH--TTCCCEEEEETTTTTTTSCCCH---HHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred             CHHHHHHHHHh--CCCCEEEEEecCCccccCCCCH---HHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEE
Confidence            56777777762  3699999999999877776644   445556554 4799999999995 999999998   999999


Q ss_pred             EcccccCCC-CHHHHH
Q 033625           87 AGSSVFGAP-EPAHVI  101 (115)
Q Consensus        87 ~Gsaif~~~-d~~~~~  101 (115)
                      +||++|+.+ ++.+..
T Consensus       224 vG~al~~~~~~~~~~~  239 (244)
T 2y88_A          224 VGKALYARRFTLPQAL  239 (244)
T ss_dssp             ECHHHHTTSSCHHHHH
T ss_pred             EcHHHHCCCcCHHHHH
Confidence            999999876 444443

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=98.99  E-value=9.5e-10  Score=80.40  Aligned_cols=78  Identities=14%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc-CCCEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIV   86 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv   86 (115)
                      ...|+-|..+..-   .++|||.+   +|.   +..  ...+.++++++..+++|+.+.||||++|++++.++ |++++.
T Consensus       115 G~~t~~e~~~A~~---~Gad~v~~---Fpa---~~~--gG~~~lk~i~~~~~~ipvvaiGGI~~~n~~~~l~agg~~~v~  183 (214)
T 1wbh_A          115 GISTVSELMLGMD---YGLKEFKF---FPA---EAN--GGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIG  183 (214)
T ss_dssp             EESSHHHHHHHHH---TTCCEEEE---TTT---TTT--THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEE
T ss_pred             ecCCHHHHHHHHH---CCCCEEEE---ecC---ccc--cCHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcCCCeEEE
Confidence            3567667666665   78999986   662   111  13567888888878999999999999999999999 999998


Q ss_pred             EcccccCCCCH
Q 033625           87 AGSSVFGAPEP   97 (115)
Q Consensus        87 ~Gsaif~~~d~   97 (115)
                       ||+|++++++
T Consensus       184 -gS~i~~~~~~  193 (214)
T 1wbh_A          184 -GSWLVPADAL  193 (214)
T ss_dssp             -EGGGSCHHHH
T ss_pred             -eccccChhhh
Confidence             9999986544

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=98.95  E-value=2.7e-09  Score=80.63  Aligned_cols=93  Identities=14%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      ..+|+.+ ++..++  .++|+|.+-+.+    ...|.. .++.+.++++..+ ++|+.+.|||+ ++++..+.++|+|.+
T Consensus       168 ev~t~ee-~~~A~~--~Gad~IGv~~r~----l~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~Gadgv  239 (272)
T 3qja_A          168 EVHTEQE-ADRALK--AGAKVIGVNARD----LMTLDV-DRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAV  239 (272)
T ss_dssp             EESSHHH-HHHHHH--HTCSEEEEESBC----TTTCCB-CTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             EcCCHHH-HHHHHH--CCCCEEEECCCc----cccccc-CHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEE
Confidence            3455544 444331  589999764322    223322 2455667776655 79999999998 999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      ++||+|++++||.+.+++|.+..
T Consensus       240 lVGsal~~a~dp~~~~~~l~~~~  262 (272)
T 3qja_A          240 LVGEGLVTSGDPRAAVADLVTAG  262 (272)
T ss_dssp             EECHHHHTCSCHHHHHHHHHTTT
T ss_pred             EEcHHHhCCCCHHHHHHHHHhhh
Confidence            99999999999999999988654

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=98.94  E-value=6.4e-09  Score=76.53  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc-CCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~   87 (115)
                      ..|+-|..+..-   .++|||.+   +|.   +..  ..++.++++++..+++|+.+.||||++|++++.++ |++++. 
T Consensus       117 v~t~~e~~~A~~---~Gad~vk~---Fpa---~~~--gG~~~lk~l~~~~~~ipvvaiGGI~~~N~~~~l~agga~~v~-  184 (224)
T 1vhc_A          117 VNNPMAIEIALE---MGISAVKF---FPA---EAS--GGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACG-  184 (224)
T ss_dssp             ECSHHHHHHHHH---TTCCEEEE---TTT---TTT--THHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEE-
T ss_pred             cCCHHHHHHHHH---CCCCEEEE---eeC---ccc--cCHHHHHHHHhhCCCCeEEEECCcCHHHHHHHHhcCCCEEEE-
Confidence            456666666655   78999986   562   111  13667888888878899999999999999999999 999998 


Q ss_pred             cccccCC
Q 033625           88 GSSVFGA   94 (115)
Q Consensus        88 Gsaif~~   94 (115)
                      ||+|+++
T Consensus       185 gS~i~~~  191 (224)
T 1vhc_A          185 GSWFVEK  191 (224)
T ss_dssp             ECGGGCH
T ss_pred             EchhcCc
Confidence            9999974

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=98.93  E-value=6.7e-11  Score=87.23  Aligned_cols=84  Identities=19%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             CEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCChh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           27 EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        27 D~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI~~~--ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      +.+.-|+.++|+.|.-......+.++++|+..++ +++ +++||+++  +. +..++|+|++|+||+||+++||.+++++
T Consensus       140 ~~~a~~a~~~G~~GvV~~at~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a~dp~~a~~~  217 (228)
T 3m47_A          140 DEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLADNPAAAAAG  217 (228)
T ss_dssp             HHHHHHHHHTTCCEEECCSSCHHHHHHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTSSCHHHHHHH
T ss_pred             HHHHHHHHHhCCcEEEECCCChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCCCCHHHHHHH
Confidence            3444456667776654432224556677766544 766 99999987  77 8889999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 033625          104 MRKSVEDAQ  112 (115)
Q Consensus       104 l~~~~~~~~  112 (115)
                      +++.++++.
T Consensus       218 ~~~~~~~~~  226 (228)
T 3m47_A          218 AIESIKDLL  226 (228)
T ss_dssp             HHHHC----
T ss_pred             HHHHHHHHh
Confidence            999887653

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=98.93  E-value=2.5e-09  Score=81.85  Aligned_cols=64  Identities=22%  Similarity=0.363  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhhCCCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           47 MMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      .++.++++++.. ++|+.  ++||| +++++..+.++|||.+++||+||+++||.+.+++|++.++++
T Consensus       195 ~~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~~  261 (297)
T 4adt_A          195 PIDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSNF  261 (297)
T ss_dssp             CHHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHhh
Confidence            456677777664 46665  99999 999999999999999999999999999999999999888754

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=98.90  E-value=1.8e-09  Score=78.92  Aligned_cols=82  Identities=22%  Similarity=0.315  Sum_probs=54.2

Q ss_pred             CCCEEEEEeeeC-CCCC---cccchhHHHH-HHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcccccCCCCHH
Q 033625           25 PVEMVLVMTVEP-GFGG---QKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        25 ~vD~vlvm~v~p-G~~g---q~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif~~~d~~   98 (115)
                      ..++|.+-++.. | +|   +.+.++.++. ++.+++...++|+.+.|||+. +.+..+.+.|+|++++||++++++|+.
T Consensus       131 ~~~~i~~~~~~~iG-tG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~  209 (219)
T 2h6r_A          131 SPDCIAVEPPELIG-TGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVE  209 (219)
T ss_dssp             CCSEEEECCCC---------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHH
T ss_pred             CCCEEEEEeccccc-cCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHH
Confidence            356666555544 5 56   6665553333 334444444799999999995 777779999999999999999999999


Q ss_pred             HHHHHHHHH
Q 033625           99 HVISLMRKS  107 (115)
Q Consensus        99 ~~~~~l~~~  107 (115)
                      +.+++|++.
T Consensus       210 ~~~~~l~~~  218 (219)
T 2h6r_A          210 EAIRELIKF  218 (219)
T ss_dssp             HHHHHHCC-
T ss_pred             HHHHHHHHh
Confidence            998887643

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=98.84  E-value=9e-10  Score=85.32  Aligned_cols=81  Identities=15%  Similarity=0.270  Sum_probs=64.8

Q ss_pred             EEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE--EEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625           29 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI--EVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        29 vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i--~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      +.+.+++|.++........++.++++++.. .+|+  .+.||| |++++.++.++|+|.+.+||+||+++||.+.+++|+
T Consensus       210 Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~-~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~  288 (330)
T 2yzr_A          210 LENEPIYEGFTLAEIIDGLYEVLLEVKKLG-RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIV  288 (330)
T ss_dssp             CTTSEEETTEEHHHHHHHHHHHHHHHHHHT-SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHH
T ss_pred             cccccccCCCcccCCCcchHHHHHHHHHhC-CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHH
Confidence            445566666555433344557788887753 5777  699999 699999999999999999999999999999999999


Q ss_pred             HHHHH
Q 033625          106 KSVED  110 (115)
Q Consensus       106 ~~~~~  110 (115)
                      +.++.
T Consensus       289 ~ai~~  293 (330)
T 2yzr_A          289 EATYN  293 (330)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88764

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=98.81  E-value=3.6e-08  Score=72.70  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCI   85 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~i   85 (115)
                      +.+|..+.....-   .++|+|.+  ..-||+.. +.....++.++++++.  ++|+.+.||| +++++..+.++|||.+
T Consensus       135 ~v~t~eea~~a~~---~Gad~Ig~--~~~g~t~~~~~~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV  207 (232)
T 3igs_A          135 DCSSVDDGLACQR---LGADIIGT--TMSGYTTPDTPEEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAV  207 (232)
T ss_dssp             ECCSHHHHHHHHH---TTCSEEEC--TTTTSSSSSCCSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             eCCCHHHHHHHHh---CCCCEEEE--cCccCCCCCCCCCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence            4455444444333   68999953  22344332 1123356778888775  7999999999 6999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      ++||+|++   |....++|.+.+++.
T Consensus       208 ~VGsal~~---p~~~~~~~~~~i~~~  230 (232)
T 3igs_A          208 TVGSAITR---LEHICGWYNDALKKA  230 (232)
T ss_dssp             EECHHHHC---HHHHHHHHHHHHHHH
T ss_pred             EEehHhcC---HHHHHHHHHHHHHHh
Confidence            99999995   778888888877654

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=98.80  E-value=2.2e-08  Score=75.11  Aligned_cols=76  Identities=13%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh-------hHHHHHHcCCCEEEEcccccCCCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-------TIAEAASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~-------ni~~l~~~Gad~iv~Gsaif~~~d   96 (115)
                      .++|||-+-  .|+         ..+.++++++..+.+|+.+.|||+.+       ++..+.++||+++++|++||+++|
T Consensus       171 ~GAD~vkt~--~~~---------~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~d  239 (263)
T 1w8s_A          171 LGADAMKIK--YTG---------DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRD  239 (263)
T ss_dssp             HTCSEEEEE--CCS---------SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTT
T ss_pred             cCCCEEEEc--CCC---------CHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcC
Confidence            479998754  231         34567777766544599999999976       888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033625           97 PAHVISLMRKSVED  110 (115)
Q Consensus        97 ~~~~~~~l~~~~~~  110 (115)
                      |.+++++|++.+++
T Consensus       240 p~~~~~~l~~~v~~  253 (263)
T 1w8s_A          240 ALKFARALAELVYG  253 (263)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998865

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.80  E-value=2.1e-08  Score=74.94  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cc-hhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FM-PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~-~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      +.|+|+.+.++.+...+.  +++.++ ...|.+|..  +. +...+.++++|+.. ++|+.+.|||+ ++++.. ...||
T Consensus       154 ~~p~t~~~rl~~ia~~a~--gfiy~v-s~~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~-~~~gA  228 (262)
T 2ekc_A          154 GAPTSTRKRIKLICEAAD--EMTYFV-SVTGTTGAREKLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHARE-IGSFA  228 (262)
T ss_dssp             ECTTCCHHHHHHHHHHCS--SCEEEE-SSCC---------CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHH-HHTTS
T ss_pred             eCCCCCHHHHHHHHHhCC--CCEEEE-ecCCccCCCCCcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHH-HHcCC
Confidence            578888888888775434  344443 345555543  23 44567888888875 79999999998 999999 57799


Q ss_pred             CEEEEcccccCC--CCHHHHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFGA--PEPAHVISLMRKSVED  110 (115)
Q Consensus        83 d~iv~Gsaif~~--~d~~~~~~~l~~~~~~  110 (115)
                      |++|+||+|.+.  ++..+.++++-+.+++
T Consensus       229 DgvIVGSai~~~~~~~~~~~~~~~~~~~~~  258 (262)
T 2ekc_A          229 DGVVVGSALVKLAGQKKIEDLGNLVKELKE  258 (262)
T ss_dssp             SEEEECHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CEEEECHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            999999999875  4445555555555544

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=98.80  E-value=1e-08  Score=75.18  Aligned_cols=62  Identities=19%  Similarity=0.434  Sum_probs=54.2

Q ss_pred             HHHHHHhhCCCCcEEEEcCCChh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           50 KVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        50 ki~~l~~~~~~~~i~~dGGI~~~--ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      .++++|+..++ .+.+++||+++  +..+..++|+|.+|+|++||+++||.++++++++.++++.
T Consensus       141 e~~~ir~~~~~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~~~~  204 (215)
T 3ve9_A          141 MISRVKGDFPD-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVL  204 (215)
T ss_dssp             HHHHHHHHCTT-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCC-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            45566666667 68899999999  9999999999999999999999999999999999887643

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=98.75  E-value=1.6e-08  Score=76.40  Aligned_cols=76  Identities=16%  Similarity=0.224  Sum_probs=55.4

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHH-HHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR-SLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~-~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      ..+|.-+..+.+-   .++|+|++.+.         .++.+.++. .++..+|+++|++.||||++|++.+.++|+|.+.
T Consensus       188 ev~tlee~~~A~~---aGaD~I~ld~~---------~~~~l~~~v~~l~~~~~~~~i~AsGGI~~~ni~~~~~aGaD~i~  255 (273)
T 2b7n_A          188 ECESFEEAKNAMN---AGADIVMCDNL---------SVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAIS  255 (273)
T ss_dssp             EESSHHHHHHHHH---HTCSEEEEETC---------CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred             EcCCHHHHHHHHH---cCCCEEEECCC---------CHHHHHHHHHHhhccCCCcEEEEECCCCHHHHHHHHHcCCcEEE
Confidence            4455544333333   58999997652         234444433 3444467899999999999999999999999999


Q ss_pred             EcccccCCC
Q 033625           87 AGSSVFGAP   95 (115)
Q Consensus        87 ~Gsaif~~~   95 (115)
                      +||.+++++
T Consensus       256 vGs~i~~a~  264 (273)
T 2b7n_A          256 VGALIHQAT  264 (273)
T ss_dssp             CTHHHHTCC
T ss_pred             EcHHhcCCC
Confidence            999998754

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=98.73  E-value=6.6e-08  Score=73.89  Aligned_cols=84  Identities=19%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC-CCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCI   85 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~-~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~i   85 (115)
                      +..|+.+....+.   .++|+|++.+..+|. .|+ +....++.+.++++.. ++|+.++||| +.+++..+...|||.+
T Consensus       124 ~v~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~-~~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV  198 (328)
T 2gjl_A          124 KCTAVRHALKAER---LGVDAVSIDGFECAGHPGE-DDIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAI  198 (328)
T ss_dssp             EESSHHHHHHHHH---TTCSEEEEECTTCSBCCCS-SCCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred             eCCCHHHHHHHHH---cCCCEEEEECCCCCcCCCC-ccccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence            3455555555555   789999987766542 233 2335667788887654 7999999999 6899999999999999


Q ss_pred             EEcccccCCCC
Q 033625           86 VAGSSVFGAPE   96 (115)
Q Consensus        86 v~Gsaif~~~d   96 (115)
                      .+||+++..++
T Consensus       199 ~vGs~~~~~~e  209 (328)
T 2gjl_A          199 NMGTRFLATRE  209 (328)
T ss_dssp             EESHHHHTSSS
T ss_pred             EECHHHHcCcc
Confidence            99999998665

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=98.72  E-value=1.6e-08  Score=76.84  Aligned_cols=64  Identities=19%  Similarity=0.363  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHhhCCCCcEE--EEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           46 EMMDKVRSLRNRYPSLDIE--VDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~--~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ..++.++++++. .++|+.  +.||| |.+++..+.++|||.+++||++|+++||...+++|++.+.+
T Consensus       194 ~~~~~i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~~~  260 (305)
T 2nv1_A          194 APYELLLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTH  260 (305)
T ss_dssp             CCHHHHHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHHHH
Confidence            345667777765 368888  99999 99999999999999999999999999999999999887764

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=98.71  E-value=1.8e-08  Score=76.80  Aligned_cols=75  Identities=17%  Similarity=0.314  Sum_probs=55.3

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      .+| ++.+++.++  .++|+|++-..         .++.+.+ ++.++..++++++++.||||++|++++.++|+|++++
T Consensus       200 V~t-leea~eA~~--aGaD~I~LDn~---------~~e~l~~av~~l~~~~~~v~ieASGGIt~eni~~~a~tGVD~Isv  267 (285)
T 1o4u_A          200 VEN-LEDALRAVE--AGADIVMLDNL---------SPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISS  267 (285)
T ss_dssp             ESS-HHHHHHHHH--TTCSEEEEESC---------CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEE
T ss_pred             eCC-HHHHHHHHH--cCCCEEEECCC---------CHHHHHHHHHHhhccCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence            345 444444442  58999987663         3344433 3444444567999999999999999999999999999


Q ss_pred             cccccCCC
Q 033625           88 GSSVFGAP   95 (115)
Q Consensus        88 Gsaif~~~   95 (115)
                      ||.+++++
T Consensus       268 Gslt~sa~  275 (285)
T 1o4u_A          268 SRLTLQEV  275 (285)
T ss_dssp             GGGTSSCC
T ss_pred             eHHHcCCC
Confidence            99998765

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=98.71  E-value=9.6e-09  Score=78.09  Aligned_cols=65  Identities=15%  Similarity=0.328  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHhhCCCCcEEE--EcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           46 EMMDKVRSLRNRYPSLDIEV--DGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~--dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      ..++.|+++++. +++|+.+  .||| |++++.++.++|+|.+.+||+||+++||...+++|++.+..+
T Consensus       185 ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~  252 (291)
T 3o07_A          185 VPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF  252 (291)
T ss_dssp             SCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence            346777888776 4788865  5999 899999999999999999999999999999999999887643

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.69  E-value=1.3e-07  Score=71.41  Aligned_cols=101  Identities=17%  Similarity=0.221  Sum_probs=69.5

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG   81 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G   81 (115)
                      ..+.|.|+.+.++.+.+.  .-+||-+.+ ..|++|..  +.+...+.++++|+.. +.|+.+.+|| +++++......|
T Consensus       155 ~lvap~t~~eri~~i~~~--~~gfiY~vs-~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~~~~~~~~g  230 (271)
T 3nav_A          155 FIAPPTASDETLRAVAQL--GKGYTYLLS-RAGVTGAETKANMPVHALLERLQQFD-APPALLGFGISEPAQVKQAIEAG  230 (271)
T ss_dssp             EEECTTCCHHHHHHHHHH--CCSCEEECC-CC--------CCHHHHHHHHHHHHTT-CCCEEECSSCCSHHHHHHHHHTT
T ss_pred             EEECCCCCHHHHHHHHHH--CCCeEEEEe-ccCCCCcccCCchhHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcC
Confidence            356788999988888732  346655433 55666653  4455667788888875 7999999999 599999888999


Q ss_pred             CCEEEEcccccC-----CCCHHHHHHHHHHHHH
Q 033625           82 ANCIVAGSSVFG-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        82 ad~iv~Gsaif~-----~~d~~~~~~~l~~~~~  109 (115)
                      ||++|+||+|.+     .+++.+..+.+++..+
T Consensus       231 ADgvIVGSAiv~~i~~~~~~~~~~~~~~~~~~~  263 (271)
T 3nav_A          231 AAGAISGSAVVKIIETHLDNPAKQLTELANFTQ  263 (271)
T ss_dssp             CSEEEESHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCEEEECHHHHHHHHhhccchHHHHHHHHHHHH
Confidence            999999999885     2245555555555444

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=98.69  E-value=8.8e-08  Score=70.54  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=64.4

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCI   85 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~i   85 (115)
                      +.+|..+.....-   .++|+|.+  ..-||++. ......++.++++++.  ++|+.+.||| |++++..+.++|||.+
T Consensus       135 ~v~t~eea~~a~~---~Gad~Ig~--~~~g~t~~~~~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV  207 (229)
T 3q58_A          135 DCSTVNEGISCHQ---KGIEFIGT--TLSGYTGPITPVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAV  207 (229)
T ss_dssp             ECSSHHHHHHHHH---TTCSEEEC--TTTTSSSSCCCSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             ecCCHHHHHHHHh---CCCCEEEe--cCccCCCCCcCCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence            4455544444444   68999953  22355432 1123356778888765  7999999999 6999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      ++||+|++   |....+++.+.+
T Consensus       208 ~VGsai~~---p~~~~~~f~~~~  227 (229)
T 3q58_A          208 TVGSAITR---IEHICQWFSHAV  227 (229)
T ss_dssp             EECHHHHC---HHHHHHHHHHHH
T ss_pred             EEchHhcC---hHHHHHHHHHHH
Confidence            99999996   566666666554

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=98.68  E-value=3e-08  Score=75.85  Aligned_cols=77  Identities=22%  Similarity=0.387  Sum_probs=55.8

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHH-HHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR-SLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~-~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      +..+|.-+..+.+-   .++|+|++.+         |.++.+.++. .++..+++++|++.||||++|++.+.++|+|.+
T Consensus       202 vev~tlee~~~A~~---aGaD~I~ld~---------~~~~~l~~~v~~l~~~~~~~~I~ASGGIt~~ni~~~~~aGaD~i  269 (299)
T 2jbm_A          202 VECSSLQEAVQAAE---AGADLVLLDN---------FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVI  269 (299)
T ss_dssp             EEESSHHHHHHHHH---TTCSEEEEES---------CCHHHHHHHHHHHHHHCTTSEEEEESSCCTTTHHHHCCTTCCEE
T ss_pred             EecCCHHHHHHHHH---cCCCEEEECC---------CCHHHHHHHHHHhhccCCCeeEEEECCCCHHHHHHHHHCCCCEE
Confidence            34455544434433   6899999865         2234444433 334446789999999999999999999999999


Q ss_pred             EEcccccCCC
Q 033625           86 VAGSSVFGAP   95 (115)
Q Consensus        86 v~Gsaif~~~   95 (115)
                      .+||.+++++
T Consensus       270 ~vGs~i~~a~  279 (299)
T 2jbm_A          270 SMGMLTQAAP  279 (299)
T ss_dssp             ECTHHHHSCC
T ss_pred             EEChhhcCCC
Confidence            9999988764

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=98.68  E-value=1.4e-07  Score=71.38  Aligned_cols=91  Identities=11%  Similarity=0.080  Sum_probs=65.5

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCI   85 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~i   85 (115)
                      ..+|..|. +..++  .++|+|++-..+.  ..  |.. .++...++.+..| ++++++.||| |++++..+.++|+|.+
T Consensus       175 evh~~eEl-~~A~~--~ga~iIGinnr~l--~t--~~~-dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gv  246 (272)
T 3tsm_A          175 EVHDEAEM-ERALK--LSSRLLGVNNRNL--RS--FEV-NLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTF  246 (272)
T ss_dssp             EECSHHHH-HHHTT--SCCSEEEEECBCT--TT--CCB-CTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEE
T ss_pred             EeCCHHHH-HHHHh--cCCCEEEECCCCC--cc--CCC-ChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence            34454444 44341  5899997643332  22  222 2344555555544 6899999999 9999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~  106 (115)
                      ++|++|++++||.+++++|..
T Consensus       247 LVG~almr~~d~~~~~~~l~~  267 (272)
T 3tsm_A          247 LIGESLMRQHDVAAATRALLT  267 (272)
T ss_dssp             EECHHHHTSSCHHHHHHHHHH
T ss_pred             EEcHHHcCCcCHHHHHHHHHh
Confidence            999999999999999888764

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=98.66  E-value=6.8e-08  Score=73.48  Aligned_cols=73  Identities=21%  Similarity=0.322  Sum_probs=54.5

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      ++.+++.++  .++|+|++-...|        ....+-++.++..++++++++.||||++|++++.++|+|++++|+.+.
T Consensus       204 ~eea~eal~--aGaD~I~LDn~~~--------~~~~~~v~~l~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~isvG~l~~  273 (284)
T 1qpo_A          204 LEQLDAVLP--EKPELILLDNFAV--------WQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVGALTH  273 (284)
T ss_dssp             HHHHHHHGG--GCCSEEEEETCCH--------HHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECGGGTS
T ss_pred             HHHHHHHHH--cCCCEEEECCCCH--------HHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECHHHc
Confidence            455555552  4899998766433        222233555565566899999999999999999999999999999887


Q ss_pred             CCC
Q 033625           93 GAP   95 (115)
Q Consensus        93 ~~~   95 (115)
                      +++
T Consensus       274 ~a~  276 (284)
T 1qpo_A          274 SVR  276 (284)
T ss_dssp             SBC
T ss_pred             CCC
Confidence            655

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=98.61  E-value=9.3e-08  Score=72.79  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=53.6

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +.|+  ..+|..+..+...   .++|||++-.+.|         +.+.   ++.+. ..++|+++.||||++|++++.++
T Consensus       198 ~IgV--ev~t~eea~eA~~---aGaD~I~ld~~~~---------~~~k---~av~~v~~~ipi~AsGGIt~eni~~~a~t  260 (286)
T 1x1o_A          198 KVEV--EVRSLEELEEALE---AGADLILLDNFPL---------EALR---EAVRRVGGRVPLEASGNMTLERAKAAAEA  260 (286)
T ss_dssp             CEEE--EESSHHHHHHHHH---HTCSEEEEESCCH---------HHHH---HHHHHHTTSSCEEEESSCCHHHHHHHHHH
T ss_pred             EEEE--EeCCHHHHHHHHH---cCCCEEEECCCCH---------HHHH---HHHHHhCCCCeEEEEcCCCHHHHHHHHHc
Confidence            3455  3355334444433   5899998766543         2222   22222 23699999999999999999999


Q ss_pred             CCCEEEEcccccCCC
Q 033625           81 GANCIVAGSSVFGAP   95 (115)
Q Consensus        81 Gad~iv~Gsaif~~~   95 (115)
                      |+|++++||.+++++
T Consensus       261 GvD~IsVgs~~~~a~  275 (286)
T 1x1o_A          261 GVDYVSVGALTHSAK  275 (286)
T ss_dssp             TCSEEECTHHHHSCC
T ss_pred             CCCEEEEcHHHcCCC
Confidence            999999999888754

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=98.61  E-value=8.5e-08  Score=73.59  Aligned_cols=59  Identities=17%  Similarity=0.314  Sum_probs=49.4

Q ss_pred             HHHHhhCCCCcEEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           52 RSLRNRYPSLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        52 ~~l~~~~~~~~i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +.+|+..++-.+.+.+||+++           |+.++.++|||++|+||+||+++||.++++++++.++.
T Consensus       183 ~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~dp~~a~~~i~~~i~~  252 (303)
T 3ru6_A          183 KKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIHR  252 (303)
T ss_dssp             HHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHC-
T ss_pred             HHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHh
Confidence            344554444448899999987           89999999999999999999999999999999987764

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=98.60  E-value=1.3e-07  Score=70.18  Aligned_cols=75  Identities=21%  Similarity=0.286  Sum_probs=61.9

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhh-------HHHHHHcCCCEEEEcccccCCCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~n-------i~~l~~~Gad~iv~Gsaif~~~d   96 (115)
                      .++|||.+-   |+        ..++.++++++.. ++|+.+.|||+.+|       +..+.++|++.+.+||+|++++|
T Consensus       178 ~Gad~i~~~---~~--------~~~~~l~~i~~~~-~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~  245 (273)
T 2qjg_A          178 LGADIVKTS---YT--------GDIDSFRDVVKGC-PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDD  245 (273)
T ss_dssp             TTCSEEEEC---CC--------SSHHHHHHHHHHC-SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSS
T ss_pred             cCCCEEEEC---CC--------CCHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCC
Confidence            579998753   31        2356677777654 69999999999776       88888999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033625           97 PAHVISLMRKSVED  110 (115)
Q Consensus        97 ~~~~~~~l~~~~~~  110 (115)
                      |.+.++++++.+++
T Consensus       246 ~~~~~~~l~~~~~~  259 (273)
T 2qjg_A          246 VVGITRAVCKIVHE  259 (273)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988865

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=98.59  E-value=6.8e-08  Score=72.14  Aligned_cols=76  Identities=11%  Similarity=0.107  Sum_probs=56.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC----CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP----SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~----~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~   98 (115)
                      .+.|+|.+-..+..  .-....+.   ..++++..+    ++++.+.|||+ ++++..+.+ |+|.+++||+|++++||.
T Consensus       173 ~gad~IGvn~~~l~--~~~~dl~~---~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~~  246 (254)
T 1vc4_A          173 AGAEVLGINNRDLA--TLHINLET---APRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLE  246 (254)
T ss_dssp             HTCSEEEEESBCTT--TCCBCTTH---HHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCHH
T ss_pred             cCCCEEEEccccCc--CCCCCHHH---HHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCHH
Confidence            36799986555532  21222233   334433322    68899999998 999999999 999999999999999999


Q ss_pred             HHHHHHH
Q 033625           99 HVISLMR  105 (115)
Q Consensus        99 ~~~~~l~  105 (115)
                      +++++|.
T Consensus       247 ~~~~~l~  253 (254)
T 1vc4_A          247 AALRELV  253 (254)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=98.58  E-value=1.6e-07  Score=70.77  Aligned_cols=97  Identities=26%  Similarity=0.355  Sum_probs=64.4

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      .+.|.|+.+.++.+...+.+.+|+.   ...|++|..  +.....+.++++++.. ++|+.+-|||+ ++++.++  .||
T Consensus       150 liap~s~~eri~~ia~~~~gfiy~v---s~~G~TG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~--~~A  223 (271)
T 1ujp_A          150 LLAPTSTDARIATVVRHATGFVYAV---SVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVA  223 (271)
T ss_dssp             EECTTCCHHHHHHHHTTCCSCEEEE---CC------------CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTS
T ss_pred             EeCCCCCHHHHHHHHHhCCCCEEEE---ecCcccCCCCCCCccHHHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh--cCC
Confidence            3678899998888885545555443   335666643  2344456788888764 79999999998 9999997  899


Q ss_pred             CEEEEcccccCCC----CHHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFGAP----EPAHVISLMRKSV  108 (115)
Q Consensus        83 d~iv~Gsaif~~~----d~~~~~~~l~~~~  108 (115)
                      |++|+||+|.+.-    ...+.++.+++.+
T Consensus       224 DgVIVGSAi~~~~~~~~~~~~fv~~l~~~~  253 (271)
T 1ujp_A          224 DGVVVGSALVRALEEGRSLAPLLQEIRQGL  253 (271)
T ss_dssp             SEEEECHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CEEEEChHHhcccchHHHHHHHHHHHHHHH
Confidence            9999999998632    3455555555444

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=98.57  E-value=2.2e-07  Score=68.81  Aligned_cols=74  Identities=16%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .||-|....+-   .++|+|-+   +|..   ..  ...+.|+.++.-.+++|+.+.|||+++|++++.++|+..+++||
T Consensus       135 ~TptEi~~A~~---~Gad~vK~---FPa~---~~--gG~~~lkal~~p~p~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs  203 (232)
T 4e38_A          135 NNPSTVEAALE---MGLTTLKF---FPAE---AS--GGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGT  203 (232)
T ss_dssp             CSHHHHHHHHH---TTCCEEEE---CSTT---TT--THHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBCCEEEC
T ss_pred             CCHHHHHHHHH---cCCCEEEE---CcCc---cc--cCHHHHHHHHHHhcCCCeeeEcCCCHHHHHHHHHCCCeEEEECc
Confidence            47777777766   78999975   6641   11  24577888888778999999999999999999999999999999


Q ss_pred             cccCC
Q 033625           90 SVFGA   94 (115)
Q Consensus        90 aif~~   94 (115)
                      .++..
T Consensus       204 ~l~~~  208 (232)
T 4e38_A          204 WMVDK  208 (232)
T ss_dssp             GGGCH
T ss_pred             hhcCh
Confidence            99863

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=98.55  E-value=5.7e-07  Score=67.73  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      -+.|+|+-++..-| +|+...  ..+.|+++++. .++|+.++|||. ++.+....+.|+|.+++||+|++++||...++
T Consensus       155 ~G~~aVmPlg~pIG-sG~Gi~--~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~  230 (265)
T 1wv2_A          155 IGCIAVMPLAGLIG-SGLGIC--NPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAE  230 (265)
T ss_dssp             SCCSEEEECSSSTT-CCCCCS--CHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHH
T ss_pred             hCCCEEEeCCccCC-CCCCcC--CHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence            57888843333224 454442  24556777774 589999999996 69999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      ++.+.++
T Consensus       231 af~~Av~  237 (265)
T 1wv2_A          231 AMKHAIV  237 (265)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998775

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.54  E-value=5.3e-07  Score=65.84  Aligned_cols=88  Identities=20%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      .+.++.+.+  .+++.+++.++...  |....+ .++.++++++.. ++|+.+.|||+ ++++..+.++|+|.+++||++
T Consensus       155 ~e~~~~~~~--~G~~~i~~~~~~~~--g~~~g~-~~~~i~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal  228 (252)
T 1ka9_F          155 VEWAVKGVE--LGAGEILLTSMDRD--GTKEGY-DLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAALAASVF  228 (252)
T ss_dssp             HHHHHHHHH--HTCCEEEEEETTTT--TTCSCC-CHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred             HHHHHHHHH--cCCCEEEEecccCC--CCcCCC-CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHH
Confidence            555555551  36898887654432  222222 366777777764 79999999999 599999999999999999999


Q ss_pred             cCCC-CHHHHHHHHHH
Q 033625           92 FGAP-EPAHVISLMRK  106 (115)
Q Consensus        92 f~~~-d~~~~~~~l~~  106 (115)
                      ++.+ ++.+..+.+++
T Consensus       229 ~~~~~~~~~~~~~l~~  244 (252)
T 1ka9_F          229 HFGEIPIPKLKRYLAE  244 (252)
T ss_dssp             HTTSSCHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHH
Confidence            9887 78777666543

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=98.52  E-value=6.7e-08  Score=73.73  Aligned_cols=79  Identities=14%  Similarity=0.222  Sum_probs=43.9

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHH-HHhh---CCCCcEEEEcCCChhhHHHHHHc
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS-LRNR---YPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~-l~~~---~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +.+..+|.-+..+.+-   .++|+|++-+..         ++.+.++.+ ++..   .++++|++.||||++|++.+.++
T Consensus       202 i~vev~tlee~~~A~~---aGaD~I~ld~~~---------~~~l~~~v~~l~~~~~g~~~v~I~ASGGIt~~ni~~~~~~  269 (294)
T 3c2e_A          202 IEVECLSEDEATEAIE---AGADVIMLDNFK---------GDGLKMCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCD  269 (294)
T ss_dssp             EEEECSSSHHHHHHHH---HTCSEEECCC------------------------------CCEEEEECCCCC------CCC
T ss_pred             EEEecCCHHHHHHHHH---cCCCEEEECCCC---------HHHHHHHHHHhcccccCCCCeEEEEECCCCHHHHHHHHHc
Confidence            3446677755444443   589999874422         223222222 2211   24699999999999999999999


Q ss_pred             CCCEEEEcccccCCC
Q 033625           81 GANCIVAGSSVFGAP   95 (115)
Q Consensus        81 Gad~iv~Gsaif~~~   95 (115)
                      |+|.+.+||.+++++
T Consensus       270 GvD~i~vGs~i~~a~  284 (294)
T 3c2e_A          270 DIDIYSTSSIHQGTP  284 (294)
T ss_dssp             SCSEEECGGGTSSCC
T ss_pred             CCCEEEEechhcCCC
Confidence            999999999998754

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=98.51  E-value=1.3e-07  Score=71.11  Aligned_cols=49  Identities=24%  Similarity=0.373  Sum_probs=44.4

Q ss_pred             EEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           63 IEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        63 i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      +.+..||++.           |..++.++|||++|+||+||+++||.++++++++.++.+
T Consensus       180 ~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~~~~~~  239 (259)
T 3tfx_A          180 LYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFNAE  239 (259)
T ss_dssp             EEEECCCCCC-----------CHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHTCT
T ss_pred             EEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHH
Confidence            6789999987           588999999999999999999999999999999887643

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=98.49  E-value=5.3e-07  Score=68.93  Aligned_cols=51  Identities=20%  Similarity=0.455  Sum_probs=47.1

Q ss_pred             CCc-EEEEcCCCh----hhHHHHHHcCCCEEEEcccccCC----CCHHHHH--------HHHHHHHHH
Q 033625           60 SLD-IEVDGGLGP----STIAEAASAGANCIVAGSSVFGA----PEPAHVI--------SLMRKSVED  110 (115)
Q Consensus        60 ~~~-i~~dGGI~~----~ni~~l~~~Gad~iv~Gsaif~~----~d~~~~~--------~~l~~~~~~  110 (115)
                      ..| +.+.||++.    ++++.+.++|++++++|++||++    +||.+.+        ++|++++++
T Consensus       221 ~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~~~~~~dp~~~~~~~~~~~~~~l~~iv~~  288 (304)
T 1to3_A          221 NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPKLQRLGEIVDE  288 (304)
T ss_dssp             CSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHhCccccCCCHHHHHHhhchHHHHHHHHHHhc
Confidence            689 999999998    56999999999999999999999    9999999        999998876

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=98.48  E-value=1.4e-07  Score=68.83  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=45.0

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCChhh----------HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGLGPST----------IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI~~~n----------i~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      +.++++|+..+. + .+++||++++          ..+ .++|+|++|+|++||+++||.++++++++.+
T Consensus       146 ~~~~~ir~~~~~-~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~~i~~~i  212 (213)
T 1vqt_A          146 PWAKALREKIKG-K-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIKRIKEMR  212 (213)
T ss_dssp             HHHHHHTTTCCS-C-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHHHHTC--
T ss_pred             HHHHHHHHHCCC-C-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHHHHHHHh
Confidence            566777776544 5 9999999987          578 8999999999999999999999999998654

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=98.48  E-value=2.7e-07  Score=67.72  Aligned_cols=62  Identities=26%  Similarity=0.492  Sum_probs=53.5

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCChh--hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI~~~--ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      +.++.+|+..++ .+.+.+||.++  +..+..++|+|.+|+|+.|++++||.++++++++.+++.
T Consensus       147 ~e~~~ir~~~~~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~~~  210 (222)
T 4dbe_A          147 DHITQYRRDFEK-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIEDK  210 (222)
T ss_dssp             HHHHHHHHHCTT-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHHHH
Confidence            446666766666 57899999998  788888999999999999999999999999999988764

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=98.45  E-value=7.9e-07  Score=69.03  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cc---------hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHH
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FM---------PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEA   77 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~---------~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l   77 (115)
                      .|+.+....+-   .++|+|.+-  .|+++|+.  +.         ...++.++++++.. ++|+.++||| +.+++..+
T Consensus       153 ~t~~~a~~a~~---~GaD~i~v~--g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~  226 (369)
T 3bw2_A          153 TTPEEARAVEA---AGADAVIAQ--GVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAV  226 (369)
T ss_dssp             SSHHHHHHHHH---TTCSEEEEE--CTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHH
T ss_pred             CCHHHHHHHHH---cCCCEEEEe--CCCcCCcCCCcccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHHHHHHH
Confidence            34444444444   689999873  33333321  11         12367788887664 7999999999 99999999


Q ss_pred             HHcCCCEEEEcccccCCCCH
Q 033625           78 ASAGANCIVAGSSVFGAPEP   97 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~~~d~   97 (115)
                      ++.|||.+.+||+++..+++
T Consensus       227 l~~GAd~V~vGs~~~~~~e~  246 (369)
T 3bw2_A          227 LAAGADAAQLGTAFLATDES  246 (369)
T ss_dssp             HHTTCSEEEESHHHHTSTTC
T ss_pred             HHcCCCEEEEChHHhCCccc
Confidence            99999999999999987665

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.45  E-value=1.3e-06  Score=65.66  Aligned_cols=96  Identities=16%  Similarity=0.274  Sum_probs=65.4

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeee------C------------CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-Ch
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVE------P------------GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GP   71 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~------p------------G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~   71 (115)
                      +..+..+.+. + .++|+|.+-...      +            |++|....+..++.++++++.. ++|+.+.||| +.
T Consensus       177 ~~~~~a~~l~-~-~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~  253 (311)
T 1ep3_A          177 DIVPIAKAVE-A-AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANA  253 (311)
T ss_dssp             CSHHHHHHHH-H-TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSH
T ss_pred             HHHHHHHHHH-H-cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-CCCEEEECCcCCH
Confidence            3344444443 2 579999874321      1            2344443344567788888764 7999999999 79


Q ss_pred             hhHHHHHHcCCCEEEEcccccCCCCHH-HHHHHHHHHHH
Q 033625           72 STIAEAASAGANCIVAGSSVFGAPEPA-HVISLMRKSVE  109 (115)
Q Consensus        72 ~ni~~l~~~Gad~iv~Gsaif~~~d~~-~~~~~l~~~~~  109 (115)
                      +++.++.++|||.+.+|++++..++.- +..+.++..+.
T Consensus       254 ~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~  292 (311)
T 1ep3_A          254 QDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMD  292 (311)
T ss_dssp             HHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999988766653 33344444443

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=98.39  E-value=1.5e-06  Score=65.55  Aligned_cols=83  Identities=23%  Similarity=0.338  Sum_probs=63.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      -+.|.|+-++..-| +|+....  .+.++++++..++ +|+.++|||. ++.+....+.|+|.+.+||+|++++||...+
T Consensus       144 ~G~~aVmPlg~pIG-sG~Gi~~--~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma  220 (268)
T 2htm_A          144 LGTATVMPLAAPIG-SGWGVRT--RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMA  220 (268)
T ss_dssp             HTCSCBEEBSSSTT-TCCCSTT--HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHH
T ss_pred             cCCCEEEecCccCc-CCcccCC--HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHH
Confidence            36777733322234 4554422  3347777774457 9999999996 5999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 033625          102 SLMRKSVE  109 (115)
Q Consensus       102 ~~l~~~~~  109 (115)
                      +++++.++
T Consensus       221 ~af~~Av~  228 (268)
T 2htm_A          221 EAFRLAVE  228 (268)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=98.37  E-value=1.6e-06  Score=64.98  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=70.8

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Ga   82 (115)
                      -+.|.|+.+.++.+.+.  .-+||-+.+ ..|.+|..  +.+...+.++++|+.. +.|+.+-+|| +++++..+.+ +|
T Consensus       147 lvaP~t~~eRi~~ia~~--a~gFiY~Vs-~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~a~~~~~-~A  221 (252)
T 3tha_A          147 LVSVTTPKERVKKLVKH--AKGFIYLLA-SIGITGTKSVEEAILQDKVKEIRSFT-NLPIFVGFGIQNNQDVKRMRK-VA  221 (252)
T ss_dssp             EEETTSCHHHHHHHHTT--CCSCEEEEC-CSCSSSCSHHHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHTT-TS
T ss_pred             EeCCCCcHHHHHHHHHh--CCCeEEEEe-cCCCCCcccCCCHHHHHHHHHHHHhc-CCcEEEEcCcCCHHHHHHHHh-cC
Confidence            45788999999998832  235555533 45666654  3344566788888774 7999999999 8999999876 69


Q ss_pred             CEEEEcccccC---CCCHHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFG---APEPAHVISLMRKSV  108 (115)
Q Consensus        83 d~iv~Gsaif~---~~d~~~~~~~l~~~~  108 (115)
                      |++|+||++.+   ..++.+..+.+++.+
T Consensus       222 DGVIVGSAiVk~i~~~~~~~~~~~~~~~~  250 (252)
T 3tha_A          222 DGVIVGTSIVKCFKQGNLDIIMKDIEEIF  250 (252)
T ss_dssp             SEEEECHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred             CEEEECHHHHHHHHhcCHHHHHHHHHHHh
Confidence            99999999864   446666666665543

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=98.33  E-value=1.3e-06  Score=66.55  Aligned_cols=73  Identities=18%  Similarity=0.224  Sum_probs=50.7

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      ..+|..|..+.+-   .++|+|++-...|         +.+.++-+.  ..+++++++.||||++|++++.++|+|+|.+
T Consensus       204 Ev~tl~ea~eAl~---aGaD~I~LDn~~~---------~~l~~av~~--~~~~v~ieaSGGIt~~~i~~~a~tGVD~Isv  269 (287)
T 3tqv_A          204 EVTNLDELNQAIA---AKADIVMLDNFSG---------EDIDIAVSI--ARGKVALEVSGNIDRNSIVAIAKTGVDFISV  269 (287)
T ss_dssp             EESSHHHHHHHHH---TTCSEEEEESCCH---------HHHHHHHHH--HTTTCEEEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred             EeCCHHHHHHHHH---cCCCEEEEcCCCH---------HHHHHHHHh--hcCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence            3444434444444   6899999855333         333332222  2357999999999999999999999999999


Q ss_pred             cccccCC
Q 033625           88 GSSVFGA   94 (115)
Q Consensus        88 Gsaif~~   94 (115)
                      |+.+-+.
T Consensus       270 Galt~sa  276 (287)
T 3tqv_A          270 GAITKHI  276 (287)
T ss_dssp             SHHHHSB
T ss_pred             ChhhcCC
Confidence            9876544

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=98.32  E-value=2e-06  Score=63.34  Aligned_cols=85  Identities=21%  Similarity=0.182  Sum_probs=55.2

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      +.+..+.+.+  .++++|.+..+...  |..... .++.++++++.. ++|+.+.|||+ ++++..+.++|||.+++||+
T Consensus       158 ~~e~~~~~~~--~G~~~i~~t~~~~~--g~~~g~-~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsa  231 (266)
T 2w6r_A          158 LRDWVVEVEK--RGAGEILLTSIDRD--GTKSGY-DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASV  231 (266)
T ss_dssp             HHHHHHHHHH--TTCSEEEEEETTTT--TTCSCC-CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTT
T ss_pred             HHHHHHHHHH--cCCCEEEEEeecCC--CCcCCC-CHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHH
Confidence            4455455441  47999987655432  222211 366778887764 79999999999 59999999999999999999


Q ss_pred             ccCCCCH-HHHHH
Q 033625           91 VFGAPEP-AHVIS  102 (115)
Q Consensus        91 if~~~d~-~~~~~  102 (115)
                      +++.++. .+..+
T Consensus       232 l~~~~~~~~~~~~  244 (266)
T 2w6r_A          232 FHFREIDMRELKE  244 (266)
T ss_dssp             TC-----------
T ss_pred             HHcCCCCHHHHHH
Confidence            9987743 44333

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=98.31  E-value=9.1e-07  Score=67.86  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCC-CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGF-GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~-~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ..+....+.+  .++|+|++.+..+|. .|+.   ..++.+.++++.. ++|+.++|||+ .+++..+...|||.+.+||
T Consensus       133 s~~~a~~a~~--~GaD~i~v~g~~~GG~~G~~---~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vGs  206 (326)
T 3bo9_A          133 SDSLARMVER--AGADAVIAEGMESGGHIGEV---TTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMGT  206 (326)
T ss_dssp             SHHHHHHHHH--TTCSCEEEECTTSSEECCSS---CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             CHHHHHHHHH--cCCCEEEEECCCCCccCCCc---cHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEech
Confidence            4444444441  579999988765543 3432   3566777777654 79999999998 9999999999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      +++..++
T Consensus       207 ~~~~~~e  213 (326)
T 3bo9_A          207 RFVASVE  213 (326)
T ss_dssp             HHHTBSS
T ss_pred             HHHcCcc
Confidence            9887554

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=98.31  E-value=7.4e-07  Score=68.07  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      ..+|. +.+.+.++  .++|+|++-+         +.++.   ++++++.. ++++|++.||||++|++.+.++|+|.+.
T Consensus       214 ev~tl-ee~~eA~~--aGaD~I~ld~---------~~~e~---l~~~v~~~~~~~~I~ASGGIt~~~i~~~a~~GvD~is  278 (296)
T 1qap_A          214 EVENL-DELDDALK--AGADIIMLDN---------FNTDQ---MREAVKRVNGQARLEVSGNVTAETLREFAETGVDFIS  278 (296)
T ss_dssp             EESSH-HHHHHHHH--TTCSEEEESS---------CCHHH---HHHHHHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEE
T ss_pred             EeCCH-HHHHHHHH--cCCCEEEECC---------CCHHH---HHHHHHHhCCCCeEEEECCCCHHHHHHHHHcCCCEEE
Confidence            34454 43444442  5899998743         33333   44444443 4699999999999999999999999999


Q ss_pred             EcccccCCC
Q 033625           87 AGSSVFGAP   95 (115)
Q Consensus        87 ~Gsaif~~~   95 (115)
                      +|+.+++++
T Consensus       279 vGsli~~a~  287 (296)
T 1qap_A          279 VGALTKHVR  287 (296)
T ss_dssp             CSHHHHEEE
T ss_pred             EeHHHcCCC
Confidence            999877543

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=98.29  E-value=1.9e-06  Score=66.53  Aligned_cols=72  Identities=17%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+|. +.+++.++  .++|+|++-+.         .++.+.++.+.  ..++++|++.||||++|++++.++|+|++++|
T Consensus       238 Vdtl-dea~eAl~--aGaD~I~LDn~---------~~~~l~~av~~--l~~~v~ieaSGGIt~~~I~~~a~tGVD~isvG  303 (320)
T 3paj_A          238 TETL-AELEEAIS--AGADIIMLDNF---------SLEMMREAVKI--NAGRAALENSGNITLDNLKECAETGVDYISVG  303 (320)
T ss_dssp             ESSH-HHHHHHHH--TTCSEEEEESC---------CHHHHHHHHHH--HTTSSEEEEESSCCHHHHHHHHTTTCSEEECT
T ss_pred             ECCH-HHHHHHHH--cCCCEEEECCC---------CHHHHHHHHHH--hCCCCeEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence            3444 44444442  58999998553         23343333222  23579999999999999999999999999999


Q ss_pred             ccccCC
Q 033625           89 SSVFGA   94 (115)
Q Consensus        89 saif~~   94 (115)
                      +...++
T Consensus       304 alt~sa  309 (320)
T 3paj_A          304 ALTKHL  309 (320)
T ss_dssp             HHHHSB
T ss_pred             ceecCC
Confidence            876544

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=98.28  E-value=3.2e-06  Score=64.71  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      -.+|. +.+++.++  .++|.|++-...         ++.+.+.-+.  ...++.+++.||||++|++.+.++|+|+|++
T Consensus       213 Ev~tl-~e~~eAl~--aGaDiImLDn~s---------~~~l~~av~~--~~~~v~leaSGGIt~~~i~~~A~tGVD~Isv  278 (300)
T 3l0g_A          213 ECDNI-SQVEESLS--NNVDMILLDNMS---------ISEIKKAVDI--VNGKSVLEVSGCVNIRNVRNIALTGVDYISI  278 (300)
T ss_dssp             EESSH-HHHHHHHH--TTCSEEEEESCC---------HHHHHHHHHH--HTTSSEEEEESSCCTTTHHHHHTTTCSEEEC
T ss_pred             EECCH-HHHHHHHH--cCCCEEEECCCC---------HHHHHHHHHh--hcCceEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence            34443 44444442  689999986533         3333332222  2347999999999999999999999999999


Q ss_pred             cccccCCC
Q 033625           88 GSSVFGAP   95 (115)
Q Consensus        88 Gsaif~~~   95 (115)
                      |+...+++
T Consensus       279 Galthsa~  286 (300)
T 3l0g_A          279 GCITNSFQ  286 (300)
T ss_dssp             GGGTSSCC
T ss_pred             CccccCCC
Confidence            98775543

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=98.28  E-value=1.4e-06  Score=64.55  Aligned_cols=47  Identities=21%  Similarity=0.399  Sum_probs=39.7

Q ss_pred             EEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           63 IEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        63 i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      +.+..||.++           |..++.++|+|++|+||+||+++||.++++++++.+.
T Consensus       180 l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~~~i~~~i~  237 (239)
T 3tr2_A          180 LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKALEAIDKDIK  237 (239)
T ss_dssp             EEEECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHC-
T ss_pred             EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHh
Confidence            6688999876           4778899999999999999999999999999988664

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=98.26  E-value=2.5e-06  Score=65.25  Aligned_cols=61  Identities=21%  Similarity=0.230  Sum_probs=46.5

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      .++|+|++-...|         +.+.+.-+  ...+++++++.||||++|++++.++|+|+|.+|+...+++
T Consensus       228 aGaD~I~LDn~~~---------~~l~~av~--~i~~~v~ieaSGGI~~~~i~~~a~tGVD~isvG~lt~sa~  288 (298)
T 3gnn_A          228 HGARSVLLDNFTL---------DMMRDAVR--VTEGRAVLEVSGGVNFDTVRAIAETGVDRISIGALTKDVR  288 (298)
T ss_dssp             TTCEEEEEESCCH---------HHHHHHHH--HHTTSEEEEEESSCSTTTHHHHHHTTCSEEECGGGGTSCC
T ss_pred             cCCCEEEECCCCH---------HHHHHHHH--HhCCCCeEEEEcCCCHHHHHHHHHcCCCEEEECCeecCCC
Confidence            5899999865333         33333221  1246799999999999999999999999999999876654

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=98.21  E-value=2.5e-06  Score=65.42  Aligned_cols=79  Identities=23%  Similarity=0.253  Sum_probs=58.0

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCC-CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGF-GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~-~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .++..+.+.+  .++|+|.+.+..+|. .|+.   ..++.++++++.. ++|+.++|||+ .+++..+...|||.+.+||
T Consensus       119 ~~~~a~~~~~--~GaD~i~v~g~~~GG~~g~~---~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vGs  192 (332)
T 2z6i_A          119 SVALAKRMEK--IGADAVIAEGMEAGGHIGKL---TTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVGT  192 (332)
T ss_dssp             SHHHHHHHHH--TTCSCEEEECTTSSEECCSS---CHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHH--cCCCEEEEECCCCCCCCCCc---cHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEecH
Confidence            3444444441  579999987654432 2432   3556677777654 79999999998 9999999999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      +++..++
T Consensus       193 ~~l~~~e  199 (332)
T 2z6i_A          193 RFVVAKE  199 (332)
T ss_dssp             HHHTBTT
T ss_pred             HHhcCcc
Confidence            9887653

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=98.17  E-value=2.8e-06  Score=63.64  Aligned_cols=57  Identities=25%  Similarity=0.404  Sum_probs=44.7

Q ss_pred             HHHHHhhCC-CCcEEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           51 VRSLRNRYP-SLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        51 i~~l~~~~~-~~~i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      ++.+|+..+ ++ +.+..||.++           |..++.++|+|.+|+|++||+++||.++++++++.+
T Consensus       186 ~~~iR~~~g~~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~ei  254 (255)
T 3ldv_A          186 ASLLKQHLGREF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL  254 (255)
T ss_dssp             HHHHHHHHCTTS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCCHHHHHHHHHHhh
Confidence            334444333 34 6688999876           467889999999999999999999999999998754

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.15  E-value=2.1e-05  Score=59.33  Aligned_cols=105  Identities=20%  Similarity=0.343  Sum_probs=68.8

Q ss_pred             EEecCCCCHHhH---HHhHhCCCCCCEEEEEee-------e--------------CCCCCcccchhHHHHHHHHHhhCC-
Q 033625            5 VALKPGTSVEEV---YPLVEGANPVEMVLVMTV-------E--------------PGFGGQKFMPEMMDKVRSLRNRYP-   59 (115)
Q Consensus         5 lal~p~t~~~~~---~~~~~~~~~vD~vlvm~v-------~--------------pG~~gq~~~~~~~~ki~~l~~~~~-   59 (115)
                      +=+.|+...+.+   ...+++ .++|+|.+-..       +              -|++|....+..++.++++++..+ 
T Consensus       163 vKi~~~~~~~~~~~~a~~~~~-~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~  241 (311)
T 1jub_A          163 VKLPPYFDLVHFDIMAEILNQ-FPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKP  241 (311)
T ss_dssp             EEECCCCSHHHHHHHHHHHTT-SCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCT
T ss_pred             EEECCCCCHHHHHHHHHHHHH-cCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCC
Confidence            335565444333   334433 47999876332       1              123344444566778888887653 


Q ss_pred             CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHHH
Q 033625           60 SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVED  110 (115)
Q Consensus        60 ~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~-~~d~-~~~~~~l~~~~~~  110 (115)
                      ++||.+.||| +.+.+.++..+|||.+.+|++++. .++. .+..+.+++.+.+
T Consensus       242 ~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l~~~l~~  295 (311)
T 1jub_A          242 EIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQ  295 (311)
T ss_dssp             TSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHHHHHHHH
Confidence            7999999999 789999988999999999999884 6654 2333345554444

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=98.13  E-value=8.8e-06  Score=63.68  Aligned_cols=81  Identities=19%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-----ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcC
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-----KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG   81 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-----~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~G   81 (115)
                      +..|+.+...-.-   .++|+|.+ +.+||....     .+....+..|.++++...  |+.+||||+ .+++...+++|
T Consensus       148 ~V~T~e~A~~a~~---aGaD~I~V-g~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~--PVIAdGGI~~~~di~kALa~G  221 (361)
T 3r2g_A          148 NVATYAGADYLAS---CGADIIKA-GIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR--SIVADGGIKTSGDIVKALAFG  221 (361)
T ss_dssp             EECSHHHHHHHHH---TTCSEEEE-CCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS--EEEEESCCCSHHHHHHHHHTT
T ss_pred             CcCCHHHHHHHHH---cCCCEEEE-cCCCCcCccccccCCccHHHHHHHHHHHHhCC--CEEEECCCCCHHHHHHHHHcC
Confidence            4556655554444   68999998 677875321     111125566666655432  999999995 99999999999


Q ss_pred             CCEEEEcccccCC
Q 033625           82 ANCIVAGSSVFGA   94 (115)
Q Consensus        82 ad~iv~Gsaif~~   94 (115)
                      ||.+.+|+.++..
T Consensus       222 Ad~V~iGr~f~~t  234 (361)
T 3r2g_A          222 ADFVMIGGMLAGS  234 (361)
T ss_dssp             CSEEEESGGGTTB
T ss_pred             CCEEEEChHHhCC
Confidence            9999999998865

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.12  E-value=2.1e-05  Score=59.33  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCHH-HHHHHHHHHHHH
Q 033625           39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEPA-HVISLMRKSVED  110 (115)
Q Consensus        39 ~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~~-~~~~~l~~~~~~  110 (115)
                      +|....+..++.++++++..+++|+.+.|||+ .+++.++..+|||.+.+|++++. .++.- +..+.++..+..
T Consensus       223 sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~l~~~~~~  297 (314)
T 2e6f_A          223 GGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDELLEIMAR  297 (314)
T ss_dssp             ESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHHHHHHHHH
Confidence            44444456678888888776689999999995 99999988999999999999884 67653 333345555544

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=98.07  E-value=9.4e-06  Score=61.95  Aligned_cols=58  Identities=17%  Similarity=0.303  Sum_probs=49.0

Q ss_pred             HHHHhhCCCCcEEEEcCCChh------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           52 RSLRNRYPSLDIEVDGGLGPS------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        52 ~~l~~~~~~~~i~~dGGI~~~------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +++.+.. .+|+.+.||++.+      +++...++||+++++|++||+++||.+.++.+++.+++
T Consensus       216 ~~vv~~~-~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~ivh~  279 (295)
T 3glc_A          216 ERIVAGC-PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHH  279 (295)
T ss_dssp             HHHHHTC-SSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHHHHhC
Confidence            4444433 5899999999853      68888899999999999999999999999999988764

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=98.07  E-value=1.6e-05  Score=62.08  Aligned_cols=81  Identities=22%  Similarity=0.295  Sum_probs=54.5

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCC--Cc---ccchhHHHHHHHHHhhC--CCCcEEEEcCC-ChhhHHHHHHcCCC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFG--GQ---KFMPEMMDKVRSLRNRY--PSLDIEVDGGL-GPSTIAEAASAGAN   83 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq---~~~~~~~~ki~~l~~~~--~~~~i~~dGGI-~~~ni~~l~~~Gad   83 (115)
                      ..+..+.+++  .++|+|.+ +..||.-  .+   .+....+..+.++++..  .++|+.++||| +.+++..++.+|||
T Consensus       155 t~e~A~~l~~--aGaD~I~V-G~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd  231 (361)
T 3khj_A          155 TEEATKELIE--NGADGIKV-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGAS  231 (361)
T ss_dssp             SHHHHHHHHH--TTCSEEEE-CSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHH--cCcCEEEE-ecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCC
Confidence            3444455442  68999987 6667641  11   11112334444443321  26999999999 79999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      .+.+||+++..+
T Consensus       232 ~V~vGs~~~~t~  243 (361)
T 3khj_A          232 SVMIGSILAGTE  243 (361)
T ss_dssp             EEEESTTTTTBT
T ss_pred             EEEEChhhhcCC
Confidence            999999988753

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=97.99  E-value=1.5e-05  Score=58.92  Aligned_cols=82  Identities=16%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             EEecCCCCH------------HhHHHhHhCCC--CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC
Q 033625            5 VALKPGTSV------------EEVYPLVEGAN--PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG   70 (115)
Q Consensus         5 lal~p~t~~------------~~~~~~~~~~~--~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~   70 (115)
                      +.+||++++            +.+..|...+.  ..++|-+-.  .|..+      ..+.++++++...+.|+.+=|||+
T Consensus       119 ivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~~VYld~--sG~~~------~~~~i~~i~~~~~~~Pv~vGGGI~  190 (228)
T 3vzx_A          119 CIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY--SGVLG------DIEAVKKTKAVLETSTLFYGGGIK  190 (228)
T ss_dssp             EECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC--TTSCC------CHHHHHHHHHHCSSSEEEEESSCC
T ss_pred             EEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCCEEEecC--CCCcC------CHHHHHHHHHhcCCCCEEEeCCCC
Confidence            467787777            66666653211  356665443  33222      345567777765468999999995


Q ss_pred             -hhhHHHHHHcCCCEEEEcccccCCC
Q 033625           71 -PSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        71 -~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                       ++.++.+. .|||.+|+||++++.+
T Consensus       191 t~e~a~~~~-~gAD~VVVGSa~v~~p  215 (228)
T 3vzx_A          191 DAETAKQYA-EHADVIVVGNAVYEDF  215 (228)
T ss_dssp             SHHHHHHHH-TTCSEEEECTHHHHCH
T ss_pred             CHHHHHHHH-hCCCEEEEChHHhcCH
Confidence             78899887 6999999999999743

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=97.97  E-value=4.9e-05  Score=59.00  Aligned_cols=108  Identities=19%  Similarity=0.309  Sum_probs=74.5

Q ss_pred             eEEEecCCCCHHhHHHhHhC--CCCCCEEEEE-------eee------------CCCCCcccchhHHHHHHHHHhhCC-C
Q 033625            3 PGVALKPGTSVEEVYPLVEG--ANPVEMVLVM-------TVE------------PGFGGQKFMPEMMDKVRSLRNRYP-S   60 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~--~~~vD~vlvm-------~v~------------pG~~gq~~~~~~~~ki~~l~~~~~-~   60 (115)
                      +.+=|.|++..+.+...++.  ++.+|++...       .++            -|++|....+..++.+.++++..+ +
T Consensus       196 V~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~  275 (345)
T 3oix_A          196 LGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPS  275 (345)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTT
T ss_pred             eEEEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCC
Confidence            34556788777777766654  3467766422       122            134555666677888999988764 7


Q ss_pred             CcEEEEcCCC-hhhHHHHHHcCCCEEEEccc-ccCCCCH-HHHHHHHHHHHHH
Q 033625           61 LDIEVDGGLG-PSTIAEAASAGANCIVAGSS-VFGAPEP-AHVISLMRKSVED  110 (115)
Q Consensus        61 ~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa-if~~~d~-~~~~~~l~~~~~~  110 (115)
                      +||.+.|||. .+.+.+++.+|||.+-+|++ +|..+.. .+..+.|++.+++
T Consensus       276 ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L~~~l~~  328 (345)
T 3oix_A          276 IQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKELXAIMTE  328 (345)
T ss_dssp             SEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHHHHHHHH
Confidence            9999999995 78888888999999999999 7776654 3333445554443

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=97.95  E-value=5.4e-05  Score=58.99  Aligned_cols=107  Identities=19%  Similarity=0.290  Sum_probs=73.5

Q ss_pred             EEEecCCCCHHhHHHhHh---CCCCCCEEEE-------Eeee--------------CCCCCcccchhHHHHHHHHHhhCC
Q 033625            4 GVALKPGTSVEEVYPLVE---GANPVEMVLV-------MTVE--------------PGFGGQKFMPEMMDKVRSLRNRYP   59 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~---~~~~vD~vlv-------m~v~--------------pG~~gq~~~~~~~~ki~~l~~~~~   59 (115)
                      .+=+.|+...+.+..+++   ++..+|.|.+       |.++              -|++|....+..++.+.++++..+
T Consensus       197 ~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~  276 (354)
T 4ef8_A          197 GVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCP  276 (354)
T ss_dssp             EEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCT
T ss_pred             EEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCC
Confidence            445667766665555543   3224999875       2222              134556666778888999988866


Q ss_pred             CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC-CCH-HHHHHHHHHHHHH
Q 033625           60 SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA-PEP-AHVISLMRKSVED  110 (115)
Q Consensus        60 ~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~-~d~-~~~~~~l~~~~~~  110 (115)
                      ++||.+.|||. .+.+.+++.+|||.+-+|++++.. +.. .+..+.|++.++.
T Consensus       277 ~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~  330 (354)
T 4ef8_A          277 GKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAK  330 (354)
T ss_dssp             TSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            89999999995 888888889999999999997754 554 3333445554443

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.94  E-value=1.8e-05  Score=57.54  Aligned_cols=85  Identities=12%  Similarity=0.178  Sum_probs=58.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc-----C-CC
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA-----G-AN   83 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~-----G-ad   83 (115)
                      ++.+..+.+. + .++++|.+..+...  |....+ .++.++++++.. ++|+.+.|||+ ++++..+.+.     | +|
T Consensus       145 ~~~e~~~~~~-~-~G~~~i~~t~~~~~--g~~~g~-~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad  218 (241)
T 1qo2_A          145 DPVSLLKRLK-E-YGLEEIVHTEIEKD--GTLQEH-DFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLK  218 (241)
T ss_dssp             CHHHHHHHHH-T-TTCCEEEEEETTHH--HHTCCC-CHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred             CHHHHHHHHH-h-CCCCEEEEEeeccc--ccCCcC-CHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence            4445555554 2 47999987554321  211111 356677776654 79999999999 5999999998     9 99


Q ss_pred             EEEEcccccCCC-CHHHHH
Q 033625           84 CIVAGSSVFGAP-EPAHVI  101 (115)
Q Consensus        84 ~iv~Gsaif~~~-d~~~~~  101 (115)
                      .+++||++++.+ ++.+..
T Consensus       219 gv~vgsal~~~~~~~~~~~  237 (241)
T 1qo2_A          219 GVIVGRAFLEGILTVEVMK  237 (241)
T ss_dssp             EEEECHHHHTTSSCHHHHH
T ss_pred             EEEeeHHHHcCCCCHHHHH
Confidence            999999999766 444443

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=97.93  E-value=4.3e-05  Score=57.06  Aligned_cols=76  Identities=16%  Similarity=0.314  Sum_probs=57.6

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ++|+|++=  ++++.+  |..+ ++...++.+..| +.++.+-|||+ ++.+..+.++ +|.|++|++|.+++||.+.++
T Consensus       171 g~~iIGin--nr~l~t--~~~d-~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~~d~~~~~~  244 (251)
T 1i4n_A          171 RPKIIGIN--TRDLDT--FEIK-KNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKAENPRRFLE  244 (251)
T ss_dssp             CCSEEEEE--CBCTTT--CCBC-TTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHCSSHHHHHH
T ss_pred             CCCEEEEe--Cccccc--CCCC-HHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHH
Confidence            78988642  344433  3221 344455555544 57888999996 9999999999 999999999999999999998


Q ss_pred             HHHH
Q 033625          103 LMRK  106 (115)
Q Consensus       103 ~l~~  106 (115)
                      +|..
T Consensus       245 ~l~~  248 (251)
T 1i4n_A          245 EMRA  248 (251)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8865

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=97.88  E-value=4.9e-05  Score=59.48  Aligned_cols=79  Identities=25%  Similarity=0.351  Sum_probs=53.5

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCC--c---ccchhHHHHHHHHHhh--CCCCcEEEEcCC-ChhhHHHHHHcCCCE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGG--Q---KFMPEMMDKVRSLRNR--YPSLDIEVDGGL-GPSTIAEAASAGANC   84 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~g--q---~~~~~~~~ki~~l~~~--~~~~~i~~dGGI-~~~ni~~l~~~Gad~   84 (115)
                      .+..+.+.+  .++|+|.+ ...||...  .   .+....+..+.++++.  ..++|+.++||| +.+++...+.+|||.
T Consensus       160 ~e~A~~a~~--aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~  236 (366)
T 4fo4_A          160 AEGARALIE--AGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASC  236 (366)
T ss_dssp             HHHHHHHHH--HTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHH--cCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence            344444441  58999987 56676421  1   0111234445555432  137999999999 799999999999999


Q ss_pred             EEEcccccCC
Q 033625           85 IVAGSSVFGA   94 (115)
Q Consensus        85 iv~Gsaif~~   94 (115)
                      +.+||++...
T Consensus       237 V~vGs~f~~t  246 (366)
T 4fo4_A          237 VMVGSMFAGT  246 (366)
T ss_dssp             EEESTTTTTB
T ss_pred             EEEChHhhcC
Confidence            9999998764

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=97.86  E-value=8.3e-05  Score=58.12  Aligned_cols=105  Identities=16%  Similarity=0.234  Sum_probs=70.2

Q ss_pred             EEEecCCCCHHh---HHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625            4 GVALKPGTSVEE---VYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIE   64 (115)
Q Consensus         4 Glal~p~t~~~~---~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i~   64 (115)
                      .+=+.|+...+.   +...+++ .++|.|.+-....               |++|....+..++.++++++..+ ++||.
T Consensus       224 ~vKi~p~~~~~~~~~ia~~~~~-aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI  302 (367)
T 3zwt_A          224 LVKIAPDLTSQDKEDIASVVKE-LGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPII  302 (367)
T ss_dssp             EEEECSCCCHHHHHHHHHHHHH-HTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEE
T ss_pred             EEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEE
Confidence            344567655433   3333333 5799998654321               34455555667788999988764 79999


Q ss_pred             EEcCCC-hhhHHHHHHcCCCEEEEcccc-cCCCCH-HHHHHHHHHHHH
Q 033625           65 VDGGLG-PSTIAEAASAGANCIVAGSSV-FGAPEP-AHVISLMRKSVE  109 (115)
Q Consensus        65 ~dGGI~-~~ni~~l~~~Gad~iv~Gsai-f~~~d~-~~~~~~l~~~~~  109 (115)
                      +.|||+ .+.+.+++.+|||.+.+|+++ ++.+.. .+..+.+.+.++
T Consensus       303 ~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l~~~m~  350 (367)
T 3zwt_A          303 GVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLK  350 (367)
T ss_dssp             EESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHHHHHHH
Confidence            999995 888999999999999999997 654543 233333444443

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=97.78  E-value=4.2e-05  Score=58.24  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             EEEecCC-----CCHHhHHHhHhCCC-CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHH
Q 033625            4 GVALKPG-----TSVEEVYPLVEGAN-PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         4 Glal~p~-----t~~~~~~~~~~~~~-~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~   76 (115)
                      +++++..     +|.+.++.++   + ++|.||-    .|  +++-..+.++.|+++.+.. ..++|.+.||||.+|+++
T Consensus       155 ~vTFHRAFD~~~d~~~Ale~Li---~lGvdrILT----SG--~~~~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~  225 (287)
T 3iwp_A          155 PVTFHRAFDMVHDPMAALETLL---TLGFERVLT----SG--CDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQR  225 (287)
T ss_dssp             CEEECGGGGGCSCHHHHHHHHH---HHTCSEEEE----CT--TSSSTTTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHH
T ss_pred             cEEEECchhccCCHHHHHHHHH---HcCCCEEEC----CC--CCCChHHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence            5566655     6888888888   6 8999984    12  2333467778888876653 359999999999999999


Q ss_pred             HHH-cCCCEEEEc
Q 033625           77 AAS-AGANCIVAG   88 (115)
Q Consensus        77 l~~-~Gad~iv~G   88 (115)
                      +.+ +|++.|=..
T Consensus       226 l~~~tG~~~~H~S  238 (287)
T 3iwp_A          226 ILEGSGATEFHCS  238 (287)
T ss_dssp             HHHHHCCSEEEEC
T ss_pred             HHHhhCCCEEeEC
Confidence            877 999988554

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=97.77  E-value=6.3e-05  Score=55.47  Aligned_cols=83  Identities=12%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~   87 (115)
                      ...|++..+.|.+  .++|.+.+.-....+.|.....+.   ++++.+.. .+|+++.|||+ .+++..+.++|||-+++
T Consensus        30 ~~dP~~~a~~~~~--~gad~lhvvDld~a~~~~~~~~~~---i~~i~~~~-~~pl~vGGGIrs~e~~~~~l~~GadkVii  103 (243)
T 4gj1_A           30 KYNPLKKFKEYEK--AGAKELHLVDLTGAKDPSKRQFAL---IEKLAKEV-SVNLQVGGGIRSKEEVKALLDCGVKRVVI  103 (243)
T ss_dssp             CCCHHHHHHHHHH--HTCCEEEEEEHHHHHCGGGCCHHH---HHHHHHHC-CSEEEEESSCCCHHHHHHHHHTTCSEEEE
T ss_pred             CCCHHHHHHHHHH--CCCCEEEEEecCcccccchhHHHH---HHHHHHhc-CCCeEeccccccHHHHHHHHHcCCCEEEE
Confidence            3578888777773  489999988877766666554444   55555553 69999999995 69999999999999999


Q ss_pred             cccccCCCCH
Q 033625           88 GSSVFGAPEP   97 (115)
Q Consensus        88 Gsaif~~~d~   97 (115)
                      +|+.++.++.
T Consensus       104 ~t~a~~~p~l  113 (243)
T 4gj1_A          104 GSMAIKDATL  113 (243)
T ss_dssp             CTTTTTCHHH
T ss_pred             ccccccCCch
Confidence            9999876554

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=97.76  E-value=0.00022  Score=50.03  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             HHhHHHhHhCCCCCCEEEEEee-eCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTV-EPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v-~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      .+.++.+..  .....++++.+ ..|. +..+.   .+.|+++++.. +.|+.+.||++ ++++.++.+.|+|.+++||+
T Consensus       133 ~~~i~~~~~--~~~~~vli~~~~~~g~-~~g~~---~~~i~~~~~~~-~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a  205 (237)
T 3cwo_X          133 RDWVVEVEK--RGAGEILLTSIDRDGT-KSGYD---TEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASV  205 (237)
T ss_dssp             HHHHHHHHH--HTCSEEEEEETTTTTC-CSCCC---HHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESHH
T ss_pred             HHHHHHHhh--cCCCeEEEEecCCCCc-ccccc---HHHHHHHHHhc-CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHH
Confidence            344444431  24667777765 2332 22222   56677777654 79999999998 78999999999999999999


Q ss_pred             cc-CCCCHHHHHHHHH
Q 033625           91 VF-GAPEPAHVISLMR  105 (115)
Q Consensus        91 if-~~~d~~~~~~~l~  105 (115)
                      ++ +..++.+..+.++
T Consensus       206 ~~~~~~~~~~~~~~l~  221 (237)
T 3cwo_X          206 FHFREIDVRELKEYLK  221 (237)
T ss_dssp             HHTTSSCHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHH
Confidence            85 4457777666554

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=97.74  E-value=9.8e-05  Score=53.89  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=59.0

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      +++..+.+. + .++|+|.+......+.++..   .++.++++++.. ++|+.+.|||+ ++.+..+.+.|||.+++|++
T Consensus        37 ~~~~a~~~~-~-~G~~~i~v~d~~~~~~~~~~---~~~~i~~i~~~~-~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~  110 (247)
T 3tdn_A           37 LRDWVVEVE-K-RGAGEILLTSIDRDGTKSGY---DTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLRGADKVSINTA  110 (247)
T ss_dssp             HHHHHHHHH-H-TTCSEEEEEETTTTTCSSCC---CHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEECCSHH
T ss_pred             HHHHHHHHH-H-cCCCEEEEEecCcccCCCcc---cHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCeeehhhH
Confidence            345555555 2 58999988766554443332   345677777764 79999999997 58899999999999999999


Q ss_pred             ccCCCCH
Q 033625           91 VFGAPEP   97 (115)
Q Consensus        91 if~~~d~   97 (115)
                      .+..++.
T Consensus       111 ~l~dp~~  117 (247)
T 3tdn_A          111 AVENPSL  117 (247)
T ss_dssp             HHHCTHH
T ss_pred             HhhChHH
Confidence            8876653

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=97.73  E-value=4.4e-05  Score=56.59  Aligned_cols=61  Identities=18%  Similarity=0.350  Sum_probs=46.1

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCC
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      ...+|-+-+  .|..|      ..+.++++|+..++.|+.+=||| +++.++.+.+ |||.+|+||++++.
T Consensus       159 g~~~vY~e~--sG~~g------~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~  220 (235)
T 3w01_A          159 RLPVMYIEY--SGIYG------DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKD  220 (235)
T ss_dssp             CCSEEEEEC--TTSCC------CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHC
T ss_pred             CCCEEEEec--CCCcC------CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecC
Confidence            446666544  55544      24557777776557999999999 5788888887 99999999999973

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=97.62  E-value=7.9e-05  Score=57.62  Aligned_cols=71  Identities=18%  Similarity=0.341  Sum_probs=49.9

Q ss_pred             CCCCEEEEEeeeC--CCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           24 NPVEMVLVMTVEP--GFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        24 ~~vD~vlvm~v~p--G~~gq~---~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      .++|+|.+-+...  |++|..   ..+..++.+.++++..+++|+.+.||| +.+.+..+++ |||.+.+|++++..+
T Consensus       156 aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P  232 (350)
T 3b0p_A          156 AGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDP  232 (350)
T ss_dssp             TTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCG
T ss_pred             cCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCc
Confidence            5899998643322  344421   112346778888887668999999999 7899999988 999999998875443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.61  E-value=0.00027  Score=56.90  Aligned_cols=80  Identities=21%  Similarity=0.290  Sum_probs=57.0

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCC--cc---c---chhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGG--QK---F---MPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~g--q~---~---~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      ..+..+.+.+  .++|+|.+ +.+||...  ..   +   ....+..+.++++.. ++|+.++|||+ .+++..+..+||
T Consensus       306 t~~~a~~l~~--aGad~I~v-g~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GA  381 (514)
T 1jcn_A          306 TAAQAKNLID--AGVDGLRV-GMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGA  381 (514)
T ss_dssp             SHHHHHHHHH--HTCSEEEE-CSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTC
T ss_pred             hHHHHHHHHH--cCCCEEEE-CCCCCcccccccccCCCccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCC
Confidence            3444555441  48999988 66676320  00   1   234556677776653 79999999995 799999999999


Q ss_pred             CEEEEcccccCCC
Q 033625           83 NCIVAGSSVFGAP   95 (115)
Q Consensus        83 d~iv~Gsaif~~~   95 (115)
                      |.+.+|+++...+
T Consensus       382 d~V~iG~~~l~~~  394 (514)
T 1jcn_A          382 STVMMGSLLAATT  394 (514)
T ss_dssp             SEEEESTTTTTST
T ss_pred             CeeeECHHHHcCC
Confidence            9999999987643

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=97.58  E-value=0.00024  Score=51.57  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=57.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+++..+.+.+  .++|++.+.-...++.+.   ...++.++++++.. ++|+.+.|||+ .+.+..+.++|||.+++|+
T Consensus        32 d~~~~a~~~~~--~Gad~i~v~d~~~~~~~~---~~~~~~i~~i~~~~-~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~  105 (252)
T 1ka9_F           32 DPVEAARAYDE--AGADELVFLDISATHEER---AILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNS  105 (252)
T ss_dssp             CHHHHHHHHHH--HTCSCEEEEECCSSTTCH---HHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred             CHHHHHHHHHH--cCCCEEEEEcCCccccCc---cccHHHHHHHHHhC-CCCEEEECCcCCHHHHHHHHHcCCCEEEECh
Confidence            34555555552  479998765332222222   23456677887764 79999999998 7899999999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      +.+..++
T Consensus       106 ~~l~~p~  112 (252)
T 1ka9_F          106 AAVRRPE  112 (252)
T ss_dssp             HHHHCTH
T ss_pred             HHHhCcH
Confidence            9886553

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=97.56  E-value=0.00097  Score=48.99  Aligned_cols=80  Identities=19%  Similarity=0.361  Sum_probs=60.8

Q ss_pred             EEeeeCC---CCC---cccchhHHHHHHH-HHhhCCCCcEEEEcCCChhhHH-HHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           31 VMTVEPG---FGG---QKFMPEMMDKVRS-LRNRYPSLDIEVDGGLGPSTIA-EAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        31 vm~v~pG---~~g---q~~~~~~~~ki~~-l~~~~~~~~i~~dGGI~~~ni~-~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ++.++|-   -+|   +.+.++..+...+ +|+...+.++..-|||+..|.. .+.+.|+|++-+|+++.+++|+.+.++
T Consensus       137 iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~  216 (226)
T 1w0m_A          137 AVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIV  216 (226)
T ss_dssp             EEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHH
T ss_pred             EEEEcChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHH
Confidence            4456663   255   6777775555444 4445557899999999976665 468999999999999999999999999


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      ++.+.+.+
T Consensus       217 ~l~~~~~~  224 (226)
T 1w0m_A          217 ELAKPLSE  224 (226)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98887765

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=97.55  E-value=0.00055  Score=52.46  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             ceEEEecCC------CCHH---hHHHhHhCCCCCCEEEEEeeeCCCCCc--ccch-hHHHHHHHHHhhCCCCcEEEEcCC
Q 033625            2 RPGVALKPG------TSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMP-EMMDKVRSLRNRYPSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~------t~~~---~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~-~~~~ki~~l~~~~~~~~i~~dGGI   69 (115)
                      .+++=|+|.      .+.+   .+...+++ .++|||-+..-  ++..+  ...+ ..++.++++++.. ++|+.+.|||
T Consensus       211 pv~vris~~~~~~~g~~~~~~~~~a~~l~~-~Gvd~i~v~~~--~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi  286 (338)
T 1z41_A          211 PLFVRVSASDYTDKGLDIADHIGFAKWMKE-QGVDLIDCSSG--ALVHADINVFPGYQVSFAEKIREQA-DMATGAVGMI  286 (338)
T ss_dssp             CEEEEEECCCCSTTSCCHHHHHHHHHHHHH-TTCCEEEEECC--CSSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSC
T ss_pred             cEEEEecCcccCCCCCCHHHHHHHHHHHHH-cCCCEEEEecC--ccccCCCCCCccchHHHHHHHHHHC-CCCEEEECCC
Confidence            356666663      2333   23333433 57999987532  11122  1111 2345566776654 7999999999


Q ss_pred             -ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           70 -GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        70 -~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                       +.+.+.++++.| ||.+.+|++++..+|+-+.++
T Consensus       287 ~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~  321 (338)
T 1z41_A          287 TDGSMAEEILQNGRADLIFIGRELLRDPFFARTAA  321 (338)
T ss_dssp             CSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             CCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHH
Confidence             799999999999 999999999998888755443

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=97.54  E-value=0.00023  Score=54.27  Aligned_cols=93  Identities=23%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             EEEecCCCCHHh---HHHhHhCCCCCCEEEEEeeeC---------------CCCCcccchhHHHHHHHHHhhCC-CCcEE
Q 033625            4 GVALKPGTSVEE---VYPLVEGANPVEMVLVMTVEP---------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIE   64 (115)
Q Consensus         4 Glal~p~t~~~~---~~~~~~~~~~vD~vlvm~v~p---------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i~   64 (115)
                      .+=++++...+.   +...+++ .++|+|.+-....               |++|....+..++.++++++..+ ++||.
T Consensus       215 ~vKi~~~~~~~~~~~~a~~l~~-~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi  293 (336)
T 1f76_A          215 AVKIAPDLSEEELIQVADSLVR-HNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPII  293 (336)
T ss_dssp             EEECCSCCCHHHHHHHHHHHHH-TTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEE
T ss_pred             EEEecCCCCHHHHHHHHHHHHH-cCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEE
Confidence            344555544333   2333433 5799998653211               12333333455677778877543 79999


Q ss_pred             EEcCCC-hhhHHHHHHcCCCEEEEcccccC-CCCH
Q 033625           65 VDGGLG-PSTIAEAASAGANCIVAGSSVFG-APEP   97 (115)
Q Consensus        65 ~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~-~~d~   97 (115)
                      +.|||+ .+.+.+++++|||.+-+|+++.. .++.
T Consensus       294 ~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~  328 (336)
T 1f76_A          294 GVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPL  328 (336)
T ss_dssp             EESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHH
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHH
Confidence            999995 89999999999999999999653 4443

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=97.53  E-value=0.0011  Score=51.16  Aligned_cols=97  Identities=11%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             ceEEEecCCC------CHH---hHHHhHhCCCCCCEEEEEeeeCCCCCccc---chhHHHHHHHHHhhCCCCcEEEEcCC
Q 033625            2 RPGVALKPGT------SVE---EVYPLVEGANPVEMVLVMTVEPGFGGQKF---MPEMMDKVRSLRNRYPSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~t------~~~---~~~~~~~~~~~vD~vlvm~v~pG~~gq~~---~~~~~~ki~~l~~~~~~~~i~~dGGI   69 (115)
                      .+|+=|+|..      +.+   .+...+++ .++|||-+..  .++..+..   ....++-++++++.. ++|+.+-|||
T Consensus       211 pv~vRls~~~~~~~g~~~~~~~~la~~L~~-~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI  286 (340)
T 3gr7_A          211 PLFVRISASDYHPDGLTAKDYVPYAKRMKE-QGVDLVDVSS--GAIVPARMNVYPGYQVPFAELIRREA-DIPTGAVGLI  286 (340)
T ss_dssp             CEEEEEESCCCSTTSCCGGGHHHHHHHHHH-TTCCEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEESSC
T ss_pred             ceEEEeccccccCCCCCHHHHHHHHHHHHH-cCCCEEEEec--CCccCCCCCCCccccHHHHHHHHHHc-CCcEEeeCCC
Confidence            3566677642      222   23333433 4799998743  22222211   112345566777665 7999999999


Q ss_pred             -ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           70 -GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        70 -~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                       +++.+.++++.| +|.+.+|++++..+|.-+.++
T Consensus       287 ~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~  321 (340)
T 3gr7_A          287 TSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAA  321 (340)
T ss_dssp             CCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             CCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHH
Confidence             599999999999 999999999998888755443

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=97.50  E-value=0.00026  Score=56.30  Aligned_cols=106  Identities=16%  Similarity=0.170  Sum_probs=71.4

Q ss_pred             EEEecCCCCHH---hHHHhHhCCCCCCEEEEEeee-------------CCCCCcccchhHHHHHHHHHhhCC-CCcEEEE
Q 033625            4 GVALKPGTSVE---EVYPLVEGANPVEMVLVMTVE-------------PGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVD   66 (115)
Q Consensus         4 Glal~p~t~~~---~~~~~~~~~~~vD~vlvm~v~-------------pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~d   66 (115)
                      .+=|.|+.+.+   .+...+++ .++|.|.+-...             -|++|....+.+++-+.++++... ++||.+.
T Consensus       273 ~VKi~pd~~~~~i~~iA~~a~~-aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~  351 (415)
T 3i65_A          273 FVKLAPDLNQEQKKEIADVLLE-TNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS  351 (415)
T ss_dssp             EEEECSCCCHHHHHHHHHHHHH-HTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEC
T ss_pred             EEEecCCCCHHHHHHHHHHHHH-cCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEE
Confidence            45566776643   33333433 479999765432             134566656777888999988754 6999999


Q ss_pred             cCCC-hhhHHHHHHcCCCEEEEccccc-CCCCH-HHHHHHHHHHHHH
Q 033625           67 GGLG-PSTIAEAASAGANCIVAGSSVF-GAPEP-AHVISLMRKSVED  110 (115)
Q Consensus        67 GGI~-~~ni~~l~~~Gad~iv~Gsaif-~~~d~-~~~~~~l~~~~~~  110 (115)
                      |||+ .+.+.+.+.+|||.+.+|++++ +.+.. .+..+.|++.+++
T Consensus       352 GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~  398 (415)
T 3i65_A          352 GGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQ  398 (415)
T ss_dssp             SSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9997 6788888899999999999975 32443 3344445554443

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=97.49  E-value=0.00035  Score=55.26  Aligned_cols=79  Identities=23%  Similarity=0.299  Sum_probs=51.3

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCC--Cc---ccchhHHHHHHHHHhh--CCCCcEEEEcCC-ChhhHHHHHHcCCCE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFG--GQ---KFMPEMMDKVRSLRNR--YPSLDIEVDGGL-GPSTIAEAASAGANC   84 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq---~~~~~~~~ki~~l~~~--~~~~~i~~dGGI-~~~ni~~l~~~Gad~   84 (115)
                      .+..+.+++  .++|+|.+ ...||--  ..   .+....+..+.++++.  ..++|+.++||| +.+++..++.+|||.
T Consensus       195 ~e~A~~a~~--aGAD~I~v-G~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~  271 (400)
T 3ffs_A          195 EEATKELIE--NGADGIKV-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASS  271 (400)
T ss_dssp             HHHHHHHHH--TTCSEEEE-CC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSE
T ss_pred             HHHHHHHHH--cCCCEEEE-eCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCE
Confidence            444455442  58999987 4445421  11   1112234555555543  247999999999 599999999999999


Q ss_pred             EEEcccccCC
Q 033625           85 IVAGSSVFGA   94 (115)
Q Consensus        85 iv~Gsaif~~   94 (115)
                      +.+|+++...
T Consensus       272 V~vGt~f~~t  281 (400)
T 3ffs_A          272 VMIGSILAGT  281 (400)
T ss_dssp             EEECGGGTTB
T ss_pred             EEEChHHhcC
Confidence            9999998763

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.47  E-value=0.00085  Score=58.11  Aligned_cols=71  Identities=15%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccC-CCCH-HHHHHHHHHHHH
Q 033625           39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFG-APEP-AHVISLMRKSVE  109 (115)
Q Consensus        39 ~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~-~~d~-~~~~~~l~~~~~  109 (115)
                      .|....+..++.+.++++..+++||.+.||| |.+.+.+++.+|||.+.+|++++. ..+. .....+|+..+.
T Consensus       766 sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~l~  839 (1025)
T 1gte_A          766 SGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLY  839 (1025)
T ss_dssp             ESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred             CcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHHHH
Confidence            3444444556778888877668999999999 789999999999999999999875 4443 455555665554

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=97.47  E-value=0.00089  Score=51.30  Aligned_cols=83  Identities=20%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--------CC-------cccchhHHHHHHHHHhhCCCCcEEEEcCCC-hh
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGF--------GG-------QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PS   72 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--------~g-------q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~   72 (115)
                      +....+....+.+  .++|+|.+-. +.|.        ..       ........+.|.++++..+++|+.++|||+ .+
T Consensus       188 ~~~~~~~a~~a~~--~Gad~I~v~~-~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~  264 (349)
T 1p0k_A          188 FGMSKASAGKLYE--AGAAAVDIGG-YGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDAL  264 (349)
T ss_dssp             SCCCHHHHHHHHH--HTCSEEEEEC----------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHH
T ss_pred             CCCCHHHHHHHHH--cCCCEEEEcC-CCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHH
Confidence            3344555555541  4899998753 2221        11       112234556677777665679999999996 89


Q ss_pred             hHHHHHHcCCCEEEEcccccCC
Q 033625           73 TIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        73 ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .+..++.+|||.+.+|++++..
T Consensus       265 d~~k~l~~GAd~V~iG~~~l~~  286 (349)
T 1p0k_A          265 DVAKAIALGASCTGMAGHFLKA  286 (349)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHH
T ss_pred             HHHHHHHcCCCEEEEcHHHHHH
Confidence            9999889999999999997653

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=97.46  E-value=0.00045  Score=54.04  Aligned_cols=80  Identities=19%  Similarity=0.292  Sum_probs=52.6

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-----ccchhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHHHHcCCC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-----KFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGAN   83 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-----~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l~~~Gad   83 (115)
                      ..+..+.+. + .++|+|.+ +..||.-..     .+....++.+..+++.  ..++|+.++|||+ .+++..++.+|||
T Consensus       204 ~~~~a~~a~-~-~Gad~I~v-g~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd  280 (404)
T 1eep_A          204 TKEAALDLI-S-VGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGAD  280 (404)
T ss_dssp             SHHHHHHHH-T-TTCSEEEE-CSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCS
T ss_pred             cHHHHHHHH-h-cCCCEEEE-CCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCC
Confidence            355555555 2 58999998 666653100     0111123334444432  1379999999996 8999999999999


Q ss_pred             EEEEcccccCC
Q 033625           84 CIVAGSSVFGA   94 (115)
Q Consensus        84 ~iv~Gsaif~~   94 (115)
                      .+.+|+++..+
T Consensus       281 ~V~iG~~~l~~  291 (404)
T 1eep_A          281 SVMIGNLFAGT  291 (404)
T ss_dssp             EEEECHHHHTB
T ss_pred             HHhhCHHHhcC
Confidence            99999998543

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.46  E-value=0.00061  Score=49.40  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=56.7

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+++..+.+. + .++|++.+......+.+.   ...++.++++++. .++|+.+.|||+ ++.+..+.++|||.+++|+
T Consensus        31 d~~~~a~~~~-~-~Gad~i~v~d~~~~~~~~---~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~  104 (253)
T 1thf_D           31 DPVELGKFYS-E-IGIDELVFLDITASVEKR---KTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINT  104 (253)
T ss_dssp             CHHHHHHHHH-H-TTCCEEEEEESSCSSSHH---HHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             CHHHHHHHHH-H-cCCCEEEEECCchhhcCC---cccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence            3445555554 2 589998876443333322   3445667777765 379999999998 5779999999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      +.+..++
T Consensus       105 ~~l~~p~  111 (253)
T 1thf_D          105 AAVENPS  111 (253)
T ss_dssp             HHHHCTH
T ss_pred             HHHhChH
Confidence            9886553

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=97.45  E-value=0.00016  Score=53.48  Aligned_cols=74  Identities=12%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CHHhHHHhHhCCC-CC--CEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEE
Q 033625           12 SVEEVYPLVEGAN-PV--EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVA   87 (115)
Q Consensus        12 ~~~~~~~~~~~~~-~v--D~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~   87 (115)
                      +.+.++.+...+. .+  .+|-+.+  .|   ..   ...+.++++++...++|+.+-|||+ ++.++.+.+ |||.+|+
T Consensus       147 ~~e~~~~~a~~g~~~l~~~~Vyl~~--~G---~~---~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIV  217 (234)
T 2f6u_A          147 DKELAASYALVGEKLFNLPIIYIEY--SG---TY---GNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIV  217 (234)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEEC--TT---SC---CCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEE
T ss_pred             CHHHHHHHHHhhhhhcCCCEEEEeC--CC---Cc---chHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEE
Confidence            4455666653312 12  5555443  33   22   2345577777765479999999998 599999989 9999999


Q ss_pred             cccccCC
Q 033625           88 GSSVFGA   94 (115)
Q Consensus        88 Gsaif~~   94 (115)
                      ||++.+.
T Consensus       218 GSa~v~~  224 (234)
T 2f6u_A          218 GNVIYEK  224 (234)
T ss_dssp             CHHHHHH
T ss_pred             ChHHHhC
Confidence            9999863

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=97.44  E-value=0.00065  Score=52.37  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             eEEEecCC------CCHHh---HHHhHhCCCCCCEEEEEeeeCCCCCcc---c-chhHHHHHHHHHhhCCCCcEEEEcCC
Q 033625            3 PGVALKPG------TSVEE---VYPLVEGANPVEMVLVMTVEPGFGGQK---F-MPEMMDKVRSLRNRYPSLDIEVDGGL   69 (115)
Q Consensus         3 ~Glal~p~------t~~~~---~~~~~~~~~~vD~vlvm~v~pG~~gq~---~-~~~~~~ki~~l~~~~~~~~i~~dGGI   69 (115)
                      +|+=|+|.      ...+.   +...+++ .++|||-+..  .++..+.   . ....++-++++++.. ++|+.+.|||
T Consensus       222 V~vRls~~~~~~~g~~~~~~~~la~~L~~-~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi  297 (349)
T 3hgj_A          222 LFVRVSATDWGEGGWSLEDTLAFARRLKE-LGVDLLDCSS--GGVVLRVRIPLAPGFQVPFADAVRKRV-GLRTGAVGLI  297 (349)
T ss_dssp             EEEEEESCCCSTTSCCHHHHHHHHHHHHH-TTCCEEEEEC--CCSCSSSCCCCCTTTTHHHHHHHHHHH-CCEEEECSSC
T ss_pred             EEEEeccccccCCCCCHHHHHHHHHHHHH-cCCCEEEEec--CCcCcccccCCCccccHHHHHHHHHHc-CceEEEECCC
Confidence            56667773      23332   2233333 4799998653  2222111   0 112344566666653 6999999999


Q ss_pred             -ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           70 -GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        70 -~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                       +++.+.++++.| +|.+.+|++++..+|+.+.+.
T Consensus       298 ~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~  332 (349)
T 3hgj_A          298 TTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAA  332 (349)
T ss_dssp             CCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             CCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHH
Confidence             699999999999 999999999998888754433

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...

Probab=97.43  E-value=0.00021  Score=53.52  Aligned_cols=45  Identities=18%  Similarity=0.386  Sum_probs=40.4

Q ss_pred             EEEEcCCChh-----------hHHHHH-HcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           63 IEVDGGLGPS-----------TIAEAA-SAGANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        63 i~~dGGI~~~-----------ni~~l~-~~Gad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      +.+.-||.+.           |..+.. ++|+|.+|+|+.||+++||.++++++++.
T Consensus       193 ~~vTPGIr~~~~~~~~~~r~~tp~~a~~~aGad~iVvGR~I~~a~dp~~a~~~~~~~  249 (260)
T 3eww_A          193 LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKA  249 (260)
T ss_dssp             EEEECSBCSSSEECTTSCEEBCHHHHHTTSCCSEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred             EEECCCcCCCCCCCccCCCccCHHHHHHhcCCCEEEEChhhcCCCCHHHHHHHHHHH
Confidence            5678899875           688898 99999999999999999999999999875

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=97.43  E-value=0.00039  Score=52.77  Aligned_cols=70  Identities=17%  Similarity=0.248  Sum_probs=48.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEcccccCCCCHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSSVFGAPEPAH   99 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsaif~~~d~~~   99 (115)
                      .++|+|.+   +++...+.+. +..++.+.++++   ++|+.+.||| +.+.+..+++ .|||.+.+|++++..++.-.
T Consensus       152 ~G~d~i~v---~g~~~~~~~~~~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~  224 (318)
T 1vhn_A          152 EGVDEVFI---HTRTVVQSFTGRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFK  224 (318)
T ss_dssp             TTCCEEEE---ESSCTTTTTSSCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHH
T ss_pred             hCCCEEEE---cCCCccccCCCCcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHH
Confidence            57999976   4443222111 112233455544   7999999999 7899999887 79999999999887676543

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=97.42  E-value=0.00062  Score=54.49  Aligned_cols=106  Identities=18%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             EEEecCCCCHHh---HHHhHhCCCCCCEEEEEeeeC-------------CCCCcccchhHHHHHHHHHhhCC-CCcEEEE
Q 033625            4 GVALKPGTSVEE---VYPLVEGANPVEMVLVMTVEP-------------GFGGQKFMPEMMDKVRSLRNRYP-SLDIEVD   66 (115)
Q Consensus         4 Glal~p~t~~~~---~~~~~~~~~~vD~vlvm~v~p-------------G~~gq~~~~~~~~ki~~l~~~~~-~~~i~~d   66 (115)
                      .+=+.|+...+.   +...+++ .++|.|.+-....             |++|....+..++-++++++... ++||.+.
T Consensus       301 ~vKispd~~~ed~~~iA~~~~~-aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~  379 (443)
T 1tv5_A          301 FVKLAPDLNQEQKKEIADVLLE-TNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS  379 (443)
T ss_dssp             EEEECSCCCHHHHHHHHHHHHH-TTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred             EEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEE
Confidence            455667654333   3444444 5799997654311             22333333456777888887653 7999999


Q ss_pred             cCC-ChhhHHHHHHcCCCEEEEccc-ccCCCCHH-HHHHHHHHHHHH
Q 033625           67 GGL-GPSTIAEAASAGANCIVAGSS-VFGAPEPA-HVISLMRKSVED  110 (115)
Q Consensus        67 GGI-~~~ni~~l~~~Gad~iv~Gsa-if~~~d~~-~~~~~l~~~~~~  110 (115)
                      ||| +.+.+.+.+.+|||.+-+|++ +++.+..- +..+.+.+.++.
T Consensus       380 GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~~~i~~~l~~~l~~  426 (443)
T 1tv5_A          380 GGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQ  426 (443)
T ss_dssp             SSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHHHHHHHHHHHHHHH
Confidence            998 588899999999999999999 44455443 333344444443

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.42  E-value=0.00066  Score=54.68  Aligned_cols=79  Identities=24%  Similarity=0.359  Sum_probs=52.8

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCC--Cc---ccchhHHHHHHHHHhhC--CCCcEEEEcCC-ChhhHHHHHHcCCCE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFG--GQ---KFMPEMMDKVRSLRNRY--PSLDIEVDGGL-GPSTIAEAASAGANC   84 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq---~~~~~~~~ki~~l~~~~--~~~~i~~dGGI-~~~ni~~l~~~Gad~   84 (115)
                      .+..+.+++  .++|+|.+ +..||..  +.   .+....+..+.++++..  .++|+.++||| +.+++..++.+|||.
T Consensus       281 ~e~a~~l~~--aGaD~I~v-g~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~  357 (490)
T 4avf_A          281 AEAAKALAE--AGADAVKV-GIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYC  357 (490)
T ss_dssp             HHHHHHHHH--TTCSEEEE-CSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHH--cCCCEEEE-CCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCe
Confidence            344444442  58999987 3344431  10   11122444455555431  37999999999 899999999999999


Q ss_pred             EEEcccccCC
Q 033625           85 IVAGSSVFGA   94 (115)
Q Consensus        85 iv~Gsaif~~   94 (115)
                      +.+||++...
T Consensus       358 V~vGs~~~~~  367 (490)
T 4avf_A          358 VMMGSMFAGT  367 (490)
T ss_dssp             EEECTTTTTB
T ss_pred             eeecHHHhcC
Confidence            9999998763

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=97.41  E-value=0.0013  Score=51.04  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .++|||-+...  .+.+....  ..+.++++++.. ++|+.+.|||+.+++.++++.| ||.+.+|++++..+++.+.++
T Consensus       262 ~G~d~i~v~~~--~~~~~~~~--~~~~~~~i~~~~-~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~  336 (365)
T 2gou_A          262 HRIVYLHIAEV--DWDDAPDT--PVSFKRALREAY-QGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLR  336 (365)
T ss_dssp             TTCSEEEEECC--BTTBCCCC--CHHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHH
T ss_pred             cCCCEEEEeCC--CcCCCCCc--cHHHHHHHHHHC-CCcEEEeCCCCHHHHHHHHHCCCcceehhcHHHHhCchHHHHHH
Confidence            57999986542  12221111  124466677665 6899999999999999999998 999999999988888765543

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=97.38  E-value=0.00063  Score=51.69  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCC
Q 033625           47 MMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        47 ~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      ..+.++++++... ++|+.+-|||+ .+.+..+.++|||.+++||++.+.
T Consensus       213 ~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d  262 (286)
T 3vk5_A          213 PPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP  262 (286)
T ss_dssp             CHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred             CHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence            3455666666643 79999999995 789999999999999999999875

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=97.37  E-value=0.0022  Score=47.02  Aligned_cols=76  Identities=21%  Similarity=0.308  Sum_probs=57.8

Q ss_pred             EEeeeCC---CCC---cccchhHHHHHHH-HHhhCCCCcEEEEcCCChhhHH-HHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           31 VMTVEPG---FGG---QKFMPEMMDKVRS-LRNRYPSLDIEVDGGLGPSTIA-EAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        31 vm~v~pG---~~g---q~~~~~~~~ki~~-l~~~~~~~~i~~dGGI~~~ni~-~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ++.++|-   -+|   +.+.++..+...+ +|+..++.++..-|||+..|.. .+.+.|+|++-+|+++.+++|+.+.++
T Consensus       140 iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~  219 (225)
T 1hg3_A          140 YVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIW  219 (225)
T ss_dssp             EEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHH
T ss_pred             EEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHH
Confidence            4456664   255   6787775555444 4445557899999999976665 468999999999999999999999988


Q ss_pred             HHHH
Q 033625          103 LMRK  106 (115)
Q Consensus       103 ~l~~  106 (115)
                      ++.+
T Consensus       220 ~l~~  223 (225)
T 1hg3_A          220 DLVS  223 (225)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=97.36  E-value=0.0012  Score=51.57  Aligned_cols=80  Identities=8%  Similarity=0.066  Sum_probs=54.4

Q ss_pred             HhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCC
Q 033625           18 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPE   96 (115)
Q Consensus        18 ~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d   96 (115)
                      ..+++ .++|||-+..-  .+. +......++.++++++.. ++|+.+-|||+.+.+.++++.| +|.+.+|++++..++
T Consensus       262 ~~le~-~Gvd~i~v~~~--~~~-~~~~~~~~~~~~~ik~~~-~iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~P~  336 (377)
T 2r14_A          262 GELDR-RGLAYLHFNEP--DWI-GGDITYPEGFREQMRQRF-KGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPD  336 (377)
T ss_dssp             HHHHH-TTCSEEEEECC--C-------CCCTTHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred             HHHHH-cCCCEEEEeCC--ccc-CCCCcchHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhCch
Confidence            33433 57999986431  111 100000233456666664 6899999999999999999998 999999999998888


Q ss_pred             HHHHHH
Q 033625           97 PAHVIS  102 (115)
Q Consensus        97 ~~~~~~  102 (115)
                      +-+.++
T Consensus       337 l~~k~~  342 (377)
T 2r14_A          337 LPERFR  342 (377)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.35  E-value=0.00087  Score=54.75  Aligned_cols=80  Identities=11%  Similarity=0.121  Sum_probs=59.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh------------hhHHHHH
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAEAA   78 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~------------~ni~~l~   78 (115)
                      .|++..+.|.+  .++|.+.+.-......+..-....++.|+++++.. .+|+.+.|||+.            +++..+.
T Consensus       281 dp~~~A~~~~~--~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~-~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l  357 (555)
T 1jvn_A          281 KPVQLAQKYYQ--QGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYF  357 (555)
T ss_dssp             HHHHHHHHHHH--TTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred             CHHHHHHHHHH--cCCCEEEEEeCCccccccCCCchHHHHHHHHHhhC-CCcEEEeCccccchhcccccchHHHHHHHHH
Confidence            45666666652  47899988777765554433445677788887654 799999999987            6799999


Q ss_pred             HcCCCEEEEcccccC
Q 033625           79 SAGANCIVAGSSVFG   93 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~   93 (115)
                      ++|||.+++||+.++
T Consensus       358 ~aGad~V~igt~~~~  372 (555)
T 1jvn_A          358 RSGADKVSIGTDAVY  372 (555)
T ss_dssp             HHTCSEEEECHHHHH
T ss_pred             HcCCCEEEECCHHhh
Confidence            999999999999875

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=97.34  E-value=0.0013  Score=51.09  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ..+..+...+  .++|+|.+-+ +.|. .....+..++-+.++++..+ ++|+.++||| +.+++..++.+|||.+.+|+
T Consensus       235 ~~e~a~~a~~--~Gad~I~vs~-~ggr-~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr  310 (370)
T 1gox_A          235 TAEDARLAVQ--HGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGR  310 (370)
T ss_dssp             SHHHHHHHHH--TTCSEEEECC-GGGT-SSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred             CHHHHHHHHH--cCCCEEEECC-CCCc-cCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecH
Confidence            3455555442  5899998732 3331 11122346666777776543 7999999999 56699999999999999999


Q ss_pred             cccC
Q 033625           90 SVFG   93 (115)
Q Consensus        90 aif~   93 (115)
                      +++.
T Consensus       311 ~~l~  314 (370)
T 1gox_A          311 PVVF  314 (370)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=97.33  E-value=0.00049  Score=51.34  Aligned_cols=110  Identities=17%  Similarity=0.223  Sum_probs=68.5

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC-CCccc-------chhH----------------------HHHHHHH
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-GGQKF-------MPEM----------------------MDKVRSL   54 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~-~gq~~-------~~~~----------------------~~ki~~l   54 (115)
                      +.++|....+.++++++....-=+|+..+.+||. .-|..       ....                      .+.++.+
T Consensus       108 vTvh~~~G~~~l~~~~~~~~~gv~vL~~tS~~~~~~~q~~~~~~~~~~~~V~~~a~~~~~~~g~~GvV~~at~~~e~~~i  187 (255)
T 3qw3_A          108 ITASPYMGSDSLQPFMRYPDKAVFVLCKTSNKGSNDLQCLRVGDRYLYEAVAERAEGPWNVNGNVGLVVGATDPVALARV  187 (255)
T ss_dssp             EEECCTTCHHHHHHHHTCTTSEEEEEEECCSGGGGTTTTSEETTEEHHHHHHHHHHTGGGGGSCEEEEECSSCHHHHHHH
T ss_pred             EEEcccCCHHHHHHHHHhhCCceEEEEeCCCccHHHHHhcccCCCCHHHHHHHHHHHHhhhhCCeEEEECCCCHHHHHHH
Confidence            5678888888888888431111134444567761 11111       0000                      2234455


Q ss_pred             HhhCCCCcEEEEc-CCChhhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 033625           55 RNRYPSLDIEVDG-GLGPSTIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQKN  114 (115)
Q Consensus        55 ~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad------~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~~  114 (115)
                      |+..++.++.+=| |....+..+..++|+|      ++|+|+.|.+++||.++++++++.+.+++++
T Consensus       188 r~~~~~~~~l~PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~dp~~aa~~i~~~i~~~~~~  254 (255)
T 3qw3_A          188 RARAPTLWFLVPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIRFA  254 (255)
T ss_dssp             HHHCSSCCEEECCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHCCCCeEEECCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5555555555434 3344488888889999      4999999999999999999999999887654

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.00041  Score=51.66  Aligned_cols=72  Identities=18%  Similarity=0.140  Sum_probs=54.7

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +.|++..+.|.+  .++|.+-+.-.++         ...+-++++.+.. .+|+.+.|||+..++..+. +|||.+++||
T Consensus        38 ~dp~~~A~~~~~--~Ga~~l~vvDL~~---------~n~~~i~~i~~~~-~~pv~vgGGir~~~~~~~l-~Ga~~Viigs  104 (260)
T 2agk_A           38 HPSSYYAKLYKD--RDVQGCHVIKLGP---------NNDDAAREALQES-PQFLQVGGGINDTNCLEWL-KWASKVIVTS  104 (260)
T ss_dssp             CCHHHHHHHHHH--TTCTTCEEEEESS---------SCHHHHHHHHHHS-TTTSEEESSCCTTTHHHHT-TTCSCEEECG
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEeCCC---------CCHHHHHHHHhcC-CceEEEeCCCCHHHHHHHh-cCCCEEEECc
Confidence            356776666663  4688887766664         2334466666654 5899999999998999999 9999999999


Q ss_pred             cccCC
Q 033625           90 SVFGA   94 (115)
Q Consensus        90 aif~~   94 (115)
                      +.++.
T Consensus       105 ~a~~~  109 (260)
T 2agk_A          105 WLFTK  109 (260)
T ss_dssp             GGBCT
T ss_pred             HHHhh
Confidence            99975

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=97.31  E-value=0.002  Score=50.03  Aligned_cols=79  Identities=13%  Similarity=0.198  Sum_probs=56.4

Q ss_pred             HhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCC
Q 033625           18 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPE   96 (115)
Q Consensus        18 ~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d   96 (115)
                      ..+++ .++|||-+..-  ++.+..  +...+.++++++.. ++|+.+.|||+.+.+.++++.| +|.+.+|++++..++
T Consensus       258 ~~l~~-~G~d~i~v~~~--~~~~~~--~~~~~~~~~v~~~~-~iPvi~~Ggit~~~a~~~l~~g~aD~V~~gR~~l~~P~  331 (364)
T 1vyr_A          258 EELAK-RGIAYLHMSET--DLAGGK--PYSEAFRQKVRERF-HGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPD  331 (364)
T ss_dssp             HHHHH-TTCSEEEEECC--BTTBCC--CCCHHHHHHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred             HHHHH-hCCCEEEEecC--cccCCC--cccHHHHHHHHHHC-CCCEEEECCcCHHHHHHHHHCCCccEEEECHHHHhChh
Confidence            33433 57999986531  121111  11234566777665 6899999999999999999998 999999999998888


Q ss_pred             HHHHHH
Q 033625           97 PAHVIS  102 (115)
Q Consensus        97 ~~~~~~  102 (115)
                      +.+.++
T Consensus       332 ~~~~~~  337 (364)
T 1vyr_A          332 LVARLQ  337 (364)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=97.31  E-value=0.00022  Score=52.86  Aligned_cols=56  Identities=18%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHH
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~  105 (115)
                      ..+.++++++...++|+.+-|||+ ++.++.+.+ |||.+|+||++.+.  +.+.+++++
T Consensus       169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~--~~~~~~~v~  225 (240)
T 1viz_A          169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYED--FDRALKTVA  225 (240)
T ss_dssp             CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHC--HHHHHTHHH
T ss_pred             hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhC--HHHHHHHHH
Confidence            345577777765478999999998 599999988 99999999999964  443444433

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=97.30  E-value=0.00042  Score=53.33  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=57.7

Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc-ccCCCCH-HHHHHHHHHHHHHH
Q 033625           38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS-VFGAPEP-AHVISLMRKSVEDA  111 (115)
Q Consensus        38 ~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa-if~~~d~-~~~~~~l~~~~~~~  111 (115)
                      ++|....+..++-+.++++..+++||...|||. .+.+.+.+.+|||.+=++|+ +|+.+.. .+-.++|.+.+++.
T Consensus       255 lSG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L~~~  331 (354)
T 3tjx_A          255 LGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK  331 (354)
T ss_dssp             EEGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred             cCchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHHHHc
Confidence            556666777888888888877789999999995 77888888999999999998 5766665 45555577666653

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=97.29  E-value=0.0012  Score=52.92  Aligned_cols=89  Identities=11%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      ..+|..|....+-   .+.|+|++=  +.++..-...   ++...++.+.. ++.++.+-|||+ ++.+..+.++ +|.|
T Consensus       163 Evh~~eE~~~A~~---lga~iIGin--nr~L~t~~~d---l~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~av  233 (452)
T 1pii_A          163 EVSNEEEQERAIA---LGAKVVGIN--NRDLRDLSID---LNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGF  233 (452)
T ss_dssp             EECSHHHHHHHHH---TTCSEEEEE--SEETTTTEEC---THHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEE
T ss_pred             EeCCHHHHHHHHH---CCCCEEEEe--CCCCCCCCCC---HHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEE
Confidence            3455555444444   678988743  3454432222   34444554443 368899999998 8999999999 9999


Q ss_pred             EEcccccCCCCHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMR  105 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~  105 (115)
                      ++|++|.+++|+.+.+++|.
T Consensus       234 LVGealmr~~d~~~~~~~l~  253 (452)
T 1pii_A          234 LIGSALMAHDDLHAAVRRVL  253 (452)
T ss_dssp             EECHHHHTCSCHHHHHHHHH
T ss_pred             EEcHHHcCCcCHHHHHHHHH
Confidence            99999999999999998887

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.28  E-value=0.0012  Score=53.45  Aligned_cols=69  Identities=22%  Similarity=0.294  Sum_probs=46.0

Q ss_pred             CCCCEEEEEeeeCCCC--Cc---ccchhHHHHHHHHHhhC--CCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFG--GQ---KFMPEMMDKVRSLRNRY--PSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~--gq---~~~~~~~~ki~~l~~~~--~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .++|+|.+ ...||.-  +.   .+....+..+.++++..  .++|+.++||| +.+.+...+.+|||.+.+||++..
T Consensus       317 aGad~i~v-g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~  393 (511)
T 3usb_A          317 AGANVVKV-GIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG  393 (511)
T ss_dssp             HTCSEEEE-CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             hCCCEEEE-CCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhc
Confidence            48999986 4555431  00   11122333344433221  26999999999 799999999999999999998754

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A

Probab=97.27  E-value=0.00089  Score=52.86  Aligned_cols=66  Identities=26%  Similarity=0.348  Sum_probs=46.9

Q ss_pred             CCCEEEEEeeeC--CCCCcccchhHHHHHHHH-Hh-hCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           25 PVEMVLVMTVEP--GFGGQKFMPEMMDKVRSL-RN-RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        25 ~vD~vlvm~v~p--G~~gq~~~~~~~~ki~~l-~~-~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      .+|.|.+-+..|  |     -..+..+++++. .+ -++++.|++.||||++++..+.+.|+|.|.+|+.+.+.+
T Consensus       236 ~~d~IrlDs~~~~~g-----d~~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gvGt~l~~~~  305 (398)
T 2i1o_A          236 KVDYIRLDTPSSRRG-----NFEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAK  305 (398)
T ss_dssp             CCCEEEECCCGGGCS-----CHHHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEECHHHHTCC
T ss_pred             CCcEEEeCCCCCCcc-----cHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccCCCC
Confidence            688888776655  4     112232333222 11 135789999999999999999999999999999876543

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=97.24  E-value=0.0043  Score=48.51  Aligned_cols=77  Identities=12%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             HhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCC
Q 033625           18 PLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPE   96 (115)
Q Consensus        18 ~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d   96 (115)
                      ..+++ .++|||-+..  +++..+.+ +.  + ++++++.. ++|+.+.|||+.+...++++.| +|.+.+|++++..++
T Consensus       273 ~~l~~-~Gvd~i~v~~--~~~~~~~~-~~--~-~~~ir~~~-~iPvi~~G~it~~~a~~~l~~g~aD~V~igR~~l~~P~  344 (379)
T 3aty_A          273 KKIEP-LSLAYLHYLR--GDMVNQQI-GD--V-VAWVRGSY-SGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPD  344 (379)
T ss_dssp             HHHGG-GCCSEEEEEC--SCTTSCCC-CC--H-HHHHHTTC-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred             HHHHH-hCCCEEEEcC--CCcCCCCc-cH--H-HHHHHHHC-CCcEEEECCCCHHHHHHHHHcCCCeEEEecHHHHhCcH
Confidence            33433 4799997643  22222222 22  4 67777665 6899999999999999999988 999999999888888


Q ss_pred             HHHHHH
Q 033625           97 PAHVIS  102 (115)
Q Consensus        97 ~~~~~~  102 (115)
                      .-+.++
T Consensus       345 l~~k~~  350 (379)
T 3aty_A          345 LVERAQ  350 (379)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            755443

>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A

Probab=97.24  E-value=0.0003  Score=54.87  Aligned_cols=63  Identities=17%  Similarity=0.240  Sum_probs=45.2

Q ss_pred             HHHHHhhCCCCcE-----EEEcCCChhhHHHH--HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625           51 VRSLRNRYPSLDI-----EVDGGLGPSTIAEA--ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  113 (115)
Q Consensus        51 i~~l~~~~~~~~i-----~~dGGI~~~ni~~l--~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~  113 (115)
                      ++.+|+..+++++     .+.||.-.+.+...  .+.|+|++++|++|++++||.++++++++.+..+++
T Consensus       270 ~~~iR~~~~~~~iLtPGIGaqgGdq~rv~tp~~a~~~gadiIvVGR~I~~A~dp~~Aa~~i~~ei~~~l~  339 (352)
T 2fds_A          270 MKIIRNKFPDSYILSPGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQIFK  339 (352)
T ss_dssp             HHHHHHHSTTCCEEECCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEcCccccccCcHHHhhCHHhHhhcCceEEEECHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            4455555566666     77888776666665  578999999999999999999999999998876543

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0012  Score=49.02  Aligned_cols=86  Identities=16%  Similarity=0.077  Sum_probs=56.6

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC---CCcEEEEcCC-ChhhHHHHHHc--CCCEEEE
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP---SLDIEVDGGL-GPSTIAEAASA--GANCIVA   87 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~---~~~i~~dGGI-~~~ni~~l~~~--Gad~iv~   87 (115)
                      +.++.+.   ..++.+++..+......+.+   -++.++++++..+   ++|+.+-||+ +++.+..+.+.  |++.+++
T Consensus       162 e~a~~~~---~~a~~il~t~i~~dG~~~G~---d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gviv  235 (260)
T 2agk_A          162 DTFRELR---KYTNEFLIHAADVEGLCGGI---DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTF  235 (260)
T ss_dssp             HHHHHHT---TTCSEEEEEC-------CCC---CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHH---HhcCEEEEEeeccccCcCCC---CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEe
Confidence            5555554   34999998877653222223   3455666666543   7999999999 56999999987  9999999


Q ss_pred             cccc--cCCC--CHHHHHHHHH
Q 033625           88 GSSV--FGAP--EPAHVISLMR  105 (115)
Q Consensus        88 Gsai--f~~~--d~~~~~~~l~  105 (115)
                      ||++  |..+  ++.+..+.++
T Consensus       236 g~al~l~~g~~~~~~~~~~~~~  257 (260)
T 2agk_A          236 GSSLDIFGGNLVKFEDCCRWNE  257 (260)
T ss_dssp             CTTBGGGTCSSBCHHHHHHHHH
T ss_pred             eCCHHHcCCCCCCHHHHHHHHH
Confidence            9996  6543  4556555544

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=97.21  E-value=0.0011  Score=48.85  Aligned_cols=86  Identities=10%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      .+.++.+. + .++.-+++..++-.-+.+-+..+.   ++++++..+++|+.+.||++ .+.+..+ +.+++.+++||++
T Consensus       154 ~~~~~~~~-~-~g~~eil~t~Id~DGt~~G~d~~l---~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al  227 (243)
T 4gj1_A          154 MEVLDFYS-N-KGLKHILCTDISKDGTMQGVNVRL---YKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKAL  227 (243)
T ss_dssp             HHHHHHHH-T-TTCCEEEEEETTC-----CCCHHH---HHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHH
T ss_pred             HHHHHHHh-h-cCCcEEEeeeecccccccCCCHHH---HHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHH
Confidence            45555555 2 478888888887654555554444   55566666789999999995 7888887 5679999999999


Q ss_pred             cCCC-CHHHHHHHH
Q 033625           92 FGAP-EPAHVISLM  104 (115)
Q Consensus        92 f~~~-d~~~~~~~l  104 (115)
                      +... +.+++.+.|
T Consensus       228 ~~g~i~l~ea~~~l  241 (243)
T 4gj1_A          228 LDGVFSVEEGIRCL  241 (243)
T ss_dssp             HTTSSCHHHHHHHH
T ss_pred             HCCCCCHHHHHHHh
Confidence            8644 666665544

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=97.17  E-value=0.0016  Score=50.45  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             CCCCEEEEEeeeCCCCCc-c--cch-hHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCH
Q 033625           24 NPVEMVLVMTVEPGFGGQ-K--FMP-EMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEP   97 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq-~--~~~-~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~   97 (115)
                      .++|||-+..-  ++... .  ..+ ..++-++++++.. ++|+.+.||| +++.+.++++.| +|.+.+|++++..+|.
T Consensus       258 ~Gvd~i~vs~g--~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl  334 (363)
T 3l5l_A          258 GGLDLLSVSVG--FTIPDTNIPWGPAFMGPIAERVRREA-KLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHW  334 (363)
T ss_dssp             TTCCEEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHH-TCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTH
T ss_pred             cCCCEEEEecC--ccccccccCCCcchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchH
Confidence            47999987542  11111 0  111 2334456666554 6999999999 599999999999 9999999999988887


Q ss_pred             HHHHH
Q 033625           98 AHVIS  102 (115)
Q Consensus        98 ~~~~~  102 (115)
                      .+.++
T Consensus       335 ~~k~~  339 (363)
T 3l5l_A          335 AYFAA  339 (363)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=97.16  E-value=0.0049  Score=46.91  Aligned_cols=81  Identities=21%  Similarity=0.224  Sum_probs=54.6

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--------CC---------cccchhHHHHHHHHHhhCCCCcEEEEcCCC-
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGF--------GG---------QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-   70 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--------~g---------q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-   70 (115)
                      ++...+....+. + .++|+|.+-. +.|.        ..         .......++-+.++++..+++|+.++|||. 
T Consensus       191 ~g~~~e~a~~~~-~-~G~d~I~vs~-~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~  267 (332)
T 1vcf_A          191 HGLSREAALALR-D-LPLAAVDVAG-AGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYT  267 (332)
T ss_dssp             SCCCHHHHHHHT-T-SCCSEEECCC-BTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCS
T ss_pred             CCCCHHHHHHHH-H-cCCCEEEeCC-CCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCC
Confidence            345556555444 2 5899997632 2221        11         112334566677777765579999999994 


Q ss_pred             hhhHHHHHHcCCCEEEEccccc
Q 033625           71 PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        71 ~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .+.+...+..|||.+.+|++++
T Consensus       268 ~~d~~kal~~GAd~V~igr~~l  289 (332)
T 1vcf_A          268 GTDGAKALALGADLLAVARPLL  289 (332)
T ss_dssp             HHHHHHHHHHTCSEEEECGGGH
T ss_pred             HHHHHHHHHhCCChHhhhHHHH
Confidence            6788888889999999999865

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=97.14  E-value=0.00085  Score=48.39  Aligned_cols=77  Identities=14%  Similarity=0.378  Sum_probs=56.4

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+++..+.+.+  .++|++-+...+..|.+..   .. +.++++++.. ++|+.+.|||+ ++.+..+.++|||.+++|+
T Consensus        32 d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~---~~-~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~  104 (244)
T 2y88_A           32 SAVDAALGWQR--DGAEWIHLVDLDAAFGRGS---NH-ELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGT  104 (244)
T ss_dssp             EHHHHHHHHHH--TTCSEEEEEEHHHHTTSCC---CH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHH--cCCCEEEEEcCcccccCCC---hH-HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence            45566666552  4799999876554444322   12 5577777664 79999999998 5789999999999999999


Q ss_pred             cccCC
Q 033625           90 SVFGA   94 (115)
Q Consensus        90 aif~~   94 (115)
                      +.+..
T Consensus       105 ~~l~~  109 (244)
T 2y88_A          105 AALEN  109 (244)
T ss_dssp             HHHHC
T ss_pred             hHhhC
Confidence            87753

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=97.13  E-value=0.0016  Score=46.95  Aligned_cols=62  Identities=15%  Similarity=0.210  Sum_probs=47.9

Q ss_pred             CCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625           26 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        26 vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      +|++|+-+-. |-+|+.|.-..+..+  ..   ...|+...||+|++|+.+.+..++..+=+.|.+=.
T Consensus       118 ~d~~LlD~~~-gGtG~~fdW~~l~~~--~~---~~~p~~LAGGL~peNV~~ai~~~p~gVDvsSGvE~  179 (203)
T 1v5x_A          118 AQALLLDGKR-PGSGEAYPRAWAKPL--LA---TGRRVILAGGIAPENLEEVLALRPYALDLASGVEE  179 (203)
T ss_dssp             CSEEEEECSS-TTSCCCCCGGGGHHH--HH---TTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEE
T ss_pred             CCEEEEcCCC-CCCCCccCHHHHHhh--hc---cCCcEEEECCCCHHHHHHHHhcCCCEEEeCCceec
Confidence            7999987643 668888876554432  11   25789999999999998766779999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.13  E-value=0.0012  Score=54.52  Aligned_cols=54  Identities=17%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           48 MDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ++.++++++.. ++|+.+.||| +++++.++++.| +|.+.+|++++..+|+.+.++
T Consensus       269 ~~~~~~i~~~~-~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~  324 (671)
T 1ps9_A          269 SWVTRKLKGHV-SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQ  324 (671)
T ss_dssp             HHHHHHHTTSC-SSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHH
Confidence            45567777654 7999999999 899999999998 999999999998888755443

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.12  E-value=0.0018  Score=52.86  Aligned_cols=86  Identities=9%  Similarity=0.115  Sum_probs=60.0

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHH-cCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAAS-AGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~-~Gad~iv~Gsa   90 (115)
                      ++..+.+. + .++|.|++..+...-..+.+   .++.++++++.. ++|+.+.||| +++.+..+.+ .|+|.+++||+
T Consensus       455 ~e~a~~~~-~-~Ga~~il~t~~~~dG~~~G~---d~~li~~l~~~~-~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a  528 (555)
T 1jvn_A          455 WELTRACE-A-LGAGEILLNCIDKDGSNSGY---DLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGM  528 (555)
T ss_dssp             HHHHHHHH-H-TTCCEEEECCGGGTTTCSCC---CHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred             HHHHHHHH-H-cCCCEEEEeCCCCCCCCCCC---CHHHHHHHHHhC-CccEEEECCCCCHHHHHHHHHhcCChHHHHHHH
Confidence            45555544 2 57999987666543222223   355667776653 7999999999 7899999987 89999999999


Q ss_pred             ccCCC-CHHHHHHHH
Q 033625           91 VFGAP-EPAHVISLM  104 (115)
Q Consensus        91 if~~~-d~~~~~~~l  104 (115)
                      ++..+ +..+..+.+
T Consensus       529 ~~~~~~~~~e~~~~l  543 (555)
T 1jvn_A          529 FHRGEFTVNDVKEYL  543 (555)
T ss_dssp             HHTTSCCHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHH
Confidence            88765 444444433

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=97.08  E-value=0.00088  Score=48.45  Aligned_cols=77  Identities=16%  Similarity=0.346  Sum_probs=55.4

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+++..+.+.+  .++|++.+...+..|.+...   . +.++++++.. ++|+.+.|||+ ++.+..+.++|||.+++|+
T Consensus        33 d~~~~a~~~~~--~Gad~i~v~~~d~~~~~~~~---~-~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~  105 (244)
T 1vzw_A           33 SPLEAALAWQR--SGAEWLHLVDLDAAFGTGDN---R-ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGT  105 (244)
T ss_dssp             CHHHHHHHHHH--TTCSEEEEEEHHHHHTSCCC---H-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHH--cCCCEEEEecCchhhcCCCh---H-HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence            45555565552  58999988754444433321   2 5577777664 79999999998 5779999999999999999


Q ss_pred             cccCC
Q 033625           90 SVFGA   94 (115)
Q Consensus        90 aif~~   94 (115)
                      ..+..
T Consensus       106 ~~l~~  110 (244)
T 1vzw_A          106 AALET  110 (244)
T ss_dssp             HHHHC
T ss_pred             hHhhC
Confidence            87753

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.05  E-value=0.0017  Score=47.38  Aligned_cols=76  Identities=24%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ++++..+.+.+  .++|.|.+.  .+...+.... ..++.++++++.. ++|+.+.||++ .+.+..+.++|||.+++|+
T Consensus        31 ~~~~~a~~~~~--~Ga~~i~v~--d~~~~~~~~g-~~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~  104 (266)
T 2w6r_A           31 LLRDWVVEVEK--RGAGEILLT--SIDRDGTKSG-YDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKALAAS  104 (266)
T ss_dssp             EHHHHHHHHHH--HTCSEEEEE--ETTTSSCSSC-CCHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred             CHHHHHHHHHH--CCCCEEEEE--ecCcccCCCc-ccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence            45566666652  479999984  4433222111 2356677777764 79999999987 4888899999999999999


Q ss_pred             ccc
Q 033625           90 SVF   92 (115)
Q Consensus        90 aif   92 (115)
                      +.+
T Consensus       105 ~~~  107 (266)
T 2w6r_A          105 VFH  107 (266)
T ss_dssp             CC-
T ss_pred             HHH
Confidence            988

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=97.02  E-value=0.011  Score=45.71  Aligned_cols=78  Identities=23%  Similarity=0.288  Sum_probs=50.4

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCC--c---ccc---hhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGG--Q---KFM---PEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~g--q---~~~---~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      ..+..+.+.+  .++|+|.+ +..||+..  .   .+.   ...+..+.+..+. .++|+.++|||. ...+...+.+||
T Consensus       171 t~e~A~~a~~--aGaD~I~v-~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~-~~ipvIa~GGI~~g~di~kAlalGA  246 (351)
T 2c6q_A          171 TGEMVEELIL--SGADIIKV-GIGPGSVCTTRKKTGVGYPQLSAVMECADAAHG-LKGHIISDGGCSCPGDVAKAFGAGA  246 (351)
T ss_dssp             SHHHHHHHHH--TTCSEEEE-CSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTC
T ss_pred             CHHHHHHHHH--hCCCEEEE-CCCCCcCcCccccCCCCccHHHHHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCC
Confidence            3444444442  68999966 45665311  0   011   1222333333322 369999999998 889999999999


Q ss_pred             CEEEEcccccC
Q 033625           83 NCIVAGSSVFG   93 (115)
Q Consensus        83 d~iv~Gsaif~   93 (115)
                      |.+.+|+.+..
T Consensus       247 ~~V~vG~~fl~  257 (351)
T 2c6q_A          247 DFVMLGGMLAG  257 (351)
T ss_dssp             SEEEESTTTTT
T ss_pred             CceeccHHHhc
Confidence            99999998763

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=96.97  E-value=0.0039  Score=48.53  Aligned_cols=75  Identities=16%  Similarity=0.289  Sum_probs=53.5

Q ss_pred             HHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCC
Q 033625           16 VYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGA   94 (115)
Q Consensus        16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~   94 (115)
                      +...+++ .++|||-+..   |..+.    ..   ++++++.. +.|+.+.||++++...++++.| +|.+.+|++++..
T Consensus       255 la~~l~~-~Gvd~i~v~~---~~~~~----~~---~~~ik~~~-~iPvi~~Ggit~e~a~~~l~~G~aD~V~iGR~~lad  322 (361)
T 3gka_A          255 VARELGR-RRIAFLFARE---SFGGD----AI---GQQLKAAF-GGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIAN  322 (361)
T ss_dssp             HHHHHHH-TTCSEEEEEC---CCSTT----CC---HHHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred             HHHHHHH-cCCCEEEECC---CCCCH----HH---HHHHHHHc-CCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhC
Confidence            3344444 4799997643   22222    22   34455443 5799999999999999999988 9999999999998


Q ss_pred             CCHHHHHH
Q 033625           95 PEPAHVIS  102 (115)
Q Consensus        95 ~d~~~~~~  102 (115)
                      +++...++
T Consensus       323 Pdl~~k~~  330 (361)
T 3gka_A          323 PDLPRRFK  330 (361)
T ss_dssp             TTHHHHHH
T ss_pred             cHHHHHHH
Confidence            98755443

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=96.97  E-value=0.0028  Score=49.36  Aligned_cols=94  Identities=18%  Similarity=0.355  Sum_probs=59.1

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ..+..+...+  .++|.|.+-. + |.......+..++-|.++++. ..++|+.++|||. .+.+...+.+|||.+.+|+
T Consensus       227 ~~e~A~~a~~--~GaD~I~vsn-~-GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr  302 (352)
T 3sgz_A          227 TKEDAELAMK--HNVQGIVVSN-H-GGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGR  302 (352)
T ss_dssp             SHHHHHHHHH--TTCSEEEECC-G-GGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             cHHHHHHHHH--cCCCEEEEeC-C-CCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence            3454444441  6899997532 2 322222335566667777554 3479999999995 6777788889999999998


Q ss_pred             ccc-C-----CCCHHHHHHHHHHHHH
Q 033625           90 SVF-G-----APEPAHVISLMRKSVE  109 (115)
Q Consensus        90 aif-~-----~~d~~~~~~~l~~~~~  109 (115)
                      +++ .     .+...+.++.|++.++
T Consensus       303 ~~l~~l~~~G~~gv~~~l~~l~~el~  328 (352)
T 3sgz_A          303 PILWGLACKGEDGVKEVLDILTAELH  328 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            854 2     1223345555555444

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=96.96  E-value=0.0043  Score=44.24  Aligned_cols=80  Identities=15%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+++.++.+. + .++|++.+-.....+.   .....++.++++++.. ++|+.+.||++ ++.+..+.++|||.+.+++
T Consensus        34 ~~~~~a~~~~-~-~G~d~i~v~~~~~~~~---~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~  107 (253)
T 1h5y_A           34 DPVEMAVRYE-E-EGADEIAILDITAAPE---GRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNT  107 (253)
T ss_dssp             CHHHHHHHHH-H-TTCSCEEEEECCCCTT---THHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             cHHHHHHHHH-H-cCCCEEEEEeCCcccc---CCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence            3445555554 2 5799988754332221   2234566677887764 79999999987 6788899999999999999


Q ss_pred             cccCCCC
Q 033625           90 SVFGAPE   96 (115)
Q Consensus        90 aif~~~d   96 (115)
                      ..+..++
T Consensus       108 ~~~~~~~  114 (253)
T 1h5y_A          108 AAVRNPQ  114 (253)
T ss_dssp             HHHHCTH
T ss_pred             HHhhCcH
Confidence            8875443

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=96.89  E-value=0.0014  Score=47.24  Aligned_cols=63  Identities=22%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             CCEEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccC
Q 033625           26 VEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFG   93 (115)
Q Consensus        26 vD~vlvm~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~   93 (115)
                      +|++|+-+-.|  |-+|+.|.-..+..   ++  ....|+...||+|++|+.+. ...++..+=+.|.+=.
T Consensus       120 ~d~~LlD~~~~~~GGtG~~fdw~~l~~---~~--~~~~p~~LAGGL~peNV~~ai~~~~p~gVDvsSGvE~  185 (205)
T 1nsj_A          120 EFPILLDTKTPEYGGSGKTFDWSLILP---YR--DRFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEA  185 (205)
T ss_dssp             TSCEEEEESCSSSSSCCSCCCGGGTGG---GG--GGSSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEE
T ss_pred             CCEEEECCCCCCCCCCCCccCHHHHHh---hh--cCCCcEEEECCCCHHHHHHHHHhcCCCEEEECCceec
Confidence            89999988665  67888887554322   11  12578999999999999875 4579999999999864

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.86  E-value=0.0047  Score=49.28  Aligned_cols=78  Identities=24%  Similarity=0.251  Sum_probs=50.6

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-----ccchhHHHHHHHHHhh--CCCCcEEEEcCC-ChhhHHHHHHcCCC
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-----KFMPEMMDKVRSLRNR--YPSLDIEVDGGL-GPSTIAEAASAGAN   83 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-----~~~~~~~~ki~~l~~~--~~~~~i~~dGGI-~~~ni~~l~~~Gad   83 (115)
                      ..+..+.+.+  .++|+|.+ +..+|....     .+......-+.++++.  ..++|+.++||| +.+.+..++.+|||
T Consensus       288 t~e~a~~l~~--~G~d~I~v-~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd  364 (494)
T 1vrd_A          288 TPEGTEALIK--AGADAVKV-GVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAE  364 (494)
T ss_dssp             SHHHHHHHHH--TTCSEEEE-CSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             CHHHHHHHHH--cCCCEEEE-cCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCC
Confidence            3444455442  58999987 566652110     0111122333333332  137999999999 89999999999999


Q ss_pred             EEEEccccc
Q 033625           84 CIVAGSSVF   92 (115)
Q Consensus        84 ~iv~Gsaif   92 (115)
                      .+.+|+++.
T Consensus       365 ~V~iGr~~l  373 (494)
T 1vrd_A          365 SVMVGSIFA  373 (494)
T ss_dssp             EEEESHHHH
T ss_pred             EEEECHHHh
Confidence            999999974

>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}

Probab=96.85  E-value=0.0016  Score=52.22  Aligned_cols=110  Identities=17%  Similarity=0.215  Sum_probs=73.6

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC-CCccc-------chh----------------------HHHHHHHH
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-GGQKF-------MPE----------------------MMDKVRSL   54 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~-~gq~~-------~~~----------------------~~~ki~~l   54 (115)
                      +.++|....+.++++++.+..-=+|+..+.+|+. .=|..       ...                      ..+.++.+
T Consensus       109 vTvh~~~G~~~l~~~~~~~~~~v~vL~~tS~~~~~~lq~~~~~~~~~~~~V~~~a~~~~~~~g~~GvV~gat~~~e~~~i  188 (453)
T 3qw4_B          109 ITASPYMGSDSLQPFMRYPDKAVFVLCKTSNKGSNDLQCLRVGDRYLYEAVAERAEGPWNVNGNVGLVVGATDPVALARV  188 (453)
T ss_dssp             EEECSTTCHHHHHHHHTCTTSEEEEEEECSSGGGGGTTTSEETTEEHHHHHHHHHTTTTCTTSCEEEEECTTCHHHHHHH
T ss_pred             EEEcccCCHHHHHHHHHhhCCcEEEEEeCCCcchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCeEEEECCCCHHHHHHH
Confidence            6778888888999888432221144445567762 11110       000                      12345556


Q ss_pred             HhhCCCCcEEEEc-CCChhhHHHHHHcCCCE------EEEcccccCCCCHHHHHHHHHHHHHHHhhc
Q 033625           55 RNRYPSLDIEVDG-GLGPSTIAEAASAGANC------IVAGSSVFGAPEPAHVISLMRKSVEDAQKN  114 (115)
Q Consensus        55 ~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad~------iv~Gsaif~~~d~~~~~~~l~~~~~~~~~~  114 (115)
                      |+..++.++.+=| |....+..+..++|+|.      +++|+.|.+++||.++++++++.+++++++
T Consensus       189 r~~~~~~~~l~PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~~~i~~~r~~  255 (453)
T 3qw4_B          189 RARAPTLWFLVPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIRFA  255 (453)
T ss_dssp             HHHCSSCCEEECCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHhCCCCeEEECCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCCCHHHHHHHHHHHHHHHHhc
Confidence            6555555565545 44445888888899998      999999999999999999999999877654

>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*

Probab=96.83  E-value=0.0027  Score=49.50  Aligned_cols=62  Identities=15%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             HHHHHhhCCCCcEEEEcCCCh--hhHHHHHHcCCC------EEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625           51 VRSLRNRYPSLDIEVDGGLGP--STIAEAASAGAN------CIVAGSSVFGAPEPAHVISLMRKSVEDAQK  113 (115)
Q Consensus        51 i~~l~~~~~~~~i~~dGGI~~--~ni~~l~~~Gad------~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~  113 (115)
                      ++.+|+..+++++ +..||..  .+..++.+.|+|      ++++|++|.+++||.++++++++.+..+++
T Consensus       280 l~~IR~~~~~~~i-LtPGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~~a~~  349 (353)
T 2ffc_A          280 IKKIRELFPDCYI-LAPGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVLA  349 (353)
T ss_dssp             HHHHHHHCTTCCE-EECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeE-EeCcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            4455555555543 3555543  357788889998      999999999999999999999998887654

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=96.83  E-value=0.0067  Score=46.82  Aligned_cols=96  Identities=13%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             ceEEEecCC------CCHH---hHHHhHhCCCCCCEEEEEeeeCCCCCcc---cchhHHHHHHHHHhhCCCCcEEEEcCC
Q 033625            2 RPGVALKPG------TSVE---EVYPLVEGANPVEMVLVMTVEPGFGGQK---FMPEMMDKVRSLRNRYPSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~------t~~~---~~~~~~~~~~~vD~vlvm~v~pG~~gq~---~~~~~~~ki~~l~~~~~~~~i~~dGGI   69 (115)
                      .+|+=|+|.      .+++   .+...+++ . +|||-+.  ..++..++   .....++-++++++.. ++|+.+.|||
T Consensus       212 pv~vRls~~~~~~~g~~~~~~~~~a~~l~~-~-vd~i~vs--~g~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi  286 (343)
T 3kru_A          212 PIFVRVSADDYMEGGINIDMMVEYINMIKD-K-VDLIDVS--SGGLLNVDINLYPGYQVKYAETIKKRC-NIKTSAVGLI  286 (343)
T ss_dssp             CEEEEEECCCSSTTSCCHHHHHHHHHHHTT-T-CSEEEEE--CCCSSCCCCCCCTTTTHHHHHHHHHHH-TCEEEEESSC
T ss_pred             CeEEEeechhhhccCccHHHHHHHHHHhhc-c-ccEEecc--CCceEeeeecccCceeehHHHHHHHhc-Ccccceeeee
Confidence            456767774      2233   33444544 3 9999763  22222221   1112344456666654 6999999999


Q ss_pred             C-hhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           70 G-PSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        70 ~-~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      + ++.+.++++.| +|.+.+|++++..+|+-+.++
T Consensus       287 ~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~  321 (343)
T 3kru_A          287 TTQELAEEILSNERADLVALGRELLRNPYWVLHTY  321 (343)
T ss_dssp             CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred             eHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence            5 89999999988 999999999998888765543

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=96.79  E-value=0.0017  Score=46.96  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~G   88 (115)
                      ..+++..+.+.+  .++|+|.+-  ++..++.. ....++.+++++ . .++|+.+.|||+. +.+..+.++|||.+++|
T Consensus        30 ~~~~~~a~~~~~--~Gad~i~v~--d~~~~~~~-~~~~~~~i~~i~-~-~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg  102 (241)
T 1qo2_A           30 KDPVELVEKLIE--EGFTLIHVV--DLSNAIEN-SGENLPVLEKLS-E-FAEHIQIGGGIRSLDYAEKLRKLGYRRQIVS  102 (241)
T ss_dssp             SCHHHHHHHHHH--TTCCCEEEE--EHHHHHHC-CCTTHHHHHHGG-G-GGGGEEEESSCCSHHHHHHHHHTTCCEEEEC
T ss_pred             cCHHHHHHHHHH--cCCCEEEEe--cccccccC-CchhHHHHHHHH-h-cCCcEEEECCCCCHHHHHHHHHCCCCEEEEC
Confidence            456677777662  579999873  33222111 123456677776 4 4799999999984 77888999999999999


Q ss_pred             ccccCCCCH
Q 033625           89 SSVFGAPEP   97 (115)
Q Consensus        89 saif~~~d~   97 (115)
                      ++.+..++.
T Consensus       103 ~~~l~~p~~  111 (241)
T 1qo2_A          103 SKVLEDPSF  111 (241)
T ss_dssp             HHHHHCTTH
T ss_pred             chHhhChHH
Confidence            998876664

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=96.79  E-value=0.0035  Score=47.58  Aligned_cols=84  Identities=13%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             CCCCEEEEEeeeCCCC-------Cccc-chhHHHHHHHH----HhhCCCCcEEEEc-CC-ChhhHHHHHHc--CCCEEEE
Q 033625           24 NPVEMVLVMTVEPGFG-------GQKF-MPEMMDKVRSL----RNRYPSLDIEVDG-GL-GPSTIAEAASA--GANCIVA   87 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~-------gq~~-~~~~~~ki~~l----~~~~~~~~i~~dG-GI-~~~ni~~l~~~--Gad~iv~   87 (115)
                      .++|+|.   +|||.+       +... ..+..++++++    ++.+|++.+..-| || +++.+..+.+.  |+|++..
T Consensus       182 agpDiI~---~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~g  258 (286)
T 2p10_A          182 AGADILV---CHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYG  258 (286)
T ss_dssp             HTCSEEE---EECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEE
T ss_pred             cCCCEEE---ECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEe
Confidence            5899995   788832       2121 22223444443    4567888777776 66 68999999998  9999999


Q ss_pred             cccccCCCCHHHHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      +|++-+.+ +++++.++-+.++..
T Consensus       259 ASsier~p-~e~ai~~~~~~fk~~  281 (286)
T 2p10_A          259 ASSMERLP-AEEAIRSQTLAFKAI  281 (286)
T ss_dssp             SHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred             ehhhhcCC-HHHHHHHHHHHHHhc
Confidence            99999988 898888888777753

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=96.76  E-value=0.0058  Score=47.57  Aligned_cols=74  Identities=8%  Similarity=0.144  Sum_probs=52.8

Q ss_pred             HHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCC
Q 033625           17 YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAP   95 (115)
Q Consensus        17 ~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~   95 (115)
                      ...+++ .++|||-+..   |..+.    ..   ++++++.. +.|+.+.||++++...++++.| +|.+.+|++++..+
T Consensus       248 a~~l~~-~Gvd~i~v~~---~~~~~----~~---~~~ik~~~-~iPvi~~Ggit~e~a~~~l~~g~aD~V~iGR~~lanP  315 (362)
T 4ab4_A          248 ARELGK-RGIAFICSRE---READD----SI---GPLIKEAF-GGPYIVNERFDKASANAALASGKADAVAFGVPFIANP  315 (362)
T ss_dssp             HHHHHH-TTCSEEEEEC---CCCTT----CC---HHHHHHHH-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred             HHHHHH-hCCCEEEECC---CCCCH----HH---HHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCccEEEECHHhHhCc
Confidence            334444 4799997643   22222    22   34444443 5799999999999999999988 99999999999888


Q ss_pred             CHHHHHH
Q 033625           96 EPAHVIS  102 (115)
Q Consensus        96 d~~~~~~  102 (115)
                      ++...++
T Consensus       316 dl~~k~~  322 (362)
T 4ab4_A          316 DLPARLA  322 (362)
T ss_dssp             THHHHHH
T ss_pred             HHHHHHH
Confidence            8755443

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=96.73  E-value=0.042  Score=37.76  Aligned_cols=93  Identities=16%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      +...+|.+.+...+.+ ..+|.|.+-+....     ..+...+-++++++.. +++++.+-|.+..+....+.+.|+|.+
T Consensus        52 lG~~~p~e~lv~aa~~-~~~diV~lS~~~~~-----~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v  125 (161)
T 2yxb_A           52 TGLRQTPEQVAMAAVQ-EDVDVIGVSILNGA-----HLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREI  125 (161)
T ss_dssp             CCSBCCHHHHHHHHHH-TTCSEEEEEESSSC-----HHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEE
T ss_pred             CCCCCCHHHHHHHHHh-cCCCEEEEEeechh-----hHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEE
Confidence            4456788877766644 68999987555442     2234444566676664 368888888888878888899999965


Q ss_pred             EEcccccCCCCHHHHHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ...     ..++.+.+..+++.++.
T Consensus       126 ~~~-----~~~~~~~~~~~~~~~~~  145 (161)
T 2yxb_A          126 FLP-----GTSLGEIIEKVRKLAEE  145 (161)
T ss_dssp             ECT-----TCCHHHHHHHHHHHHHH
T ss_pred             ECC-----CCCHHHHHHHHHHHHHH
Confidence            321     23555666666665543

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=96.72  E-value=0.0017  Score=50.64  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ..+..+.+++  .++|.|.+. -+.|.. ....+..++-+.++++.. +.|+.++||| +.+++..++.+|||.+.+|++
T Consensus       235 t~e~a~~a~~--aGad~I~vs-~~gg~~-~d~~~~~~~~l~~v~~~~-~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~  309 (380)
T 1p4c_A          235 SAEDADRCIA--EGADGVILS-NHGGRQ-LDCAISPMEVLAQSVAKT-GKPVLIDSGFRRGSDIVKALALGAEAVLLGRA  309 (380)
T ss_dssp             CHHHHHHHHH--TTCSEEEEC-CGGGTS-CTTCCCGGGTHHHHHHHH-CSCEEECSSCCSHHHHHHHHHTTCSCEEESHH
T ss_pred             cHHHHHHHHH--cCCCEEEEc-CCCCCc-CCCCcCHHHHHHHHHHHc-CCeEEEECCCCCHHHHHHHHHhCCcHhhehHH
Confidence            3455555552  589999872 233210 011122344556665543 3599999999 566999999999999999998


Q ss_pred             ccC
Q 033625           91 VFG   93 (115)
Q Consensus        91 if~   93 (115)
                      ++.
T Consensus       310 ~l~  312 (380)
T 1p4c_A          310 TLY  312 (380)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=96.72  E-value=0.0066  Score=45.48  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~   98 (115)
                      .+.+.|+|=.-+-.    .|. ..++.-.++....| +..++.-+|| +++.+..+.++|+|.|.+|+++.+++|+.
T Consensus       172 ~~a~iIGINNRnL~----tf~-vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~~  243 (258)
T 4a29_A          172 IGARFIGIMSRDFE----TGE-INKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEKI  243 (258)
T ss_dssp             TTCSEEEECSBCTT----TCC-BCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTHH
T ss_pred             CCCcEEEEeCCCcc----ccc-cCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcHH
Confidence            57888865444332    122 22344455555554 5778888999 68999999999999999999999998863

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=96.71  E-value=0.0026  Score=48.87  Aligned_cols=45  Identities=18%  Similarity=0.386  Sum_probs=39.1

Q ss_pred             EEEEcCCChh-----------hHHHHH-HcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           63 IEVDGGLGPS-----------TIAEAA-SAGANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        63 i~~dGGI~~~-----------ni~~l~-~~Gad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      +.+.-||.+.           +-.+.+ ++|+|.+|+|+.|++++||.++++++++.
T Consensus       245 l~vTPGIrp~~~~~~~g~qv~TP~~Ai~~~GaD~iVVGRpIt~A~dP~~aa~~i~~~  301 (312)
T 3g3d_A          245 LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKA  301 (312)
T ss_dssp             EEEECSBCSSSEECTTSCEEBCHHHHHHTTCCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred             EEEcCCcCCCcCCCCcCCcccCHHHHHHhCCCCEEEEChhhcCCCCHHHHHHHHHHH
Confidence            5677888774           366777 99999999999999999999999999875

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=96.70  E-value=0.016  Score=45.57  Aligned_cols=54  Identities=26%  Similarity=0.340  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           48 MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ++.++++++.. ++|+.+-|||+++.+.++++.| +|.+.+|++++..+++-+.++
T Consensus       308 ~~~~~~vk~~~-~iPvi~~G~i~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~  362 (402)
T 2hsa_B          308 ARLMRTLRNAY-QGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIK  362 (402)
T ss_dssp             HHHHHHHHHHC-SSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHCCCCceeeecHHHHhCchHHHHHH
Confidence            44566777665 6899999999999999999888 999999999998888765543

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.70  E-value=0.0089  Score=45.69  Aligned_cols=79  Identities=24%  Similarity=0.276  Sum_probs=53.7

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCC--cc---cchh--HHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCC
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGG--QK---FMPE--MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGA   82 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~g--q~---~~~~--~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Ga   82 (115)
                      +..+..+.+++  .++|+|.+ +.++|..-  ..   ....  .++.+.++++.. ++|+.++|||. .+.+...+..||
T Consensus       158 ~s~e~A~~a~~--aGad~Ivv-s~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGA  233 (336)
T 1ypf_A          158 GTPEAVRELEN--AGADATKV-GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGA  233 (336)
T ss_dssp             CSHHHHHHHHH--HTCSEEEE-CSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTC
T ss_pred             CCHHHHHHHHH--cCCCEEEE-ecCCCceeecccccCcCCchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCC
Confidence            34565555552  48999976 33454210  00   0000  456677777664 79999999996 678888889999


Q ss_pred             CEEEEcccccC
Q 033625           83 NCIVAGSSVFG   93 (115)
Q Consensus        83 d~iv~Gsaif~   93 (115)
                      |.+.+|++++.
T Consensus       234 daV~iGr~~l~  244 (336)
T 1ypf_A          234 TMVMIGSLFAG  244 (336)
T ss_dssp             SEEEESGGGTT
T ss_pred             CEEEeChhhhc
Confidence            99999999873

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=96.69  E-value=0.0044  Score=45.44  Aligned_cols=61  Identities=21%  Similarity=0.211  Sum_probs=40.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH-HcCCCEEEEccccc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVF   92 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~-~~Gad~iv~Gsaif   92 (115)
                      ..+|++|+-+  +|-+|+.|.-..++.+   ..   +.|+...||+|++|+.+.+ ..++..+=+.|.+=
T Consensus       145 ~~~d~~LlDs--~GGtG~~fDW~~~~~~---~~---~~p~iLAGGL~peNV~~Ai~~~~P~gVDVsSGVE  206 (228)
T 4aaj_A          145 YNADMVLLDT--GAGSGKLHDLRVSSLV---AR---KIPVIVAGGLNAENVEEVIKVVKPYGVDVSSGVE  206 (228)
T ss_dssp             SCCSEEEEEC---------CCCHHHHHH---HH---HSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGE
T ss_pred             cCCCEEccCC--CCCCcCcCChHHHHHh---hh---cCCeEEECCCCHHHHHHHHHHhCCCEEEeCCCCC
Confidence            4689999886  6778888876544333   22   3689999999999999865 47888888888874

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=96.68  E-value=0.0048  Score=47.95  Aligned_cols=77  Identities=14%  Similarity=0.197  Sum_probs=49.9

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc---cchhHHHHHHHHHhh-------CC--CCcEEEEcCC-ChhhHHHHH
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQK---FMPEMMDKVRSLRNR-------YP--SLDIEVDGGL-GPSTIAEAA   78 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~---~~~~~~~ki~~l~~~-------~~--~~~i~~dGGI-~~~ni~~l~   78 (115)
                      ..+..+.+++  .++|.|.+ +. -|.++..   +....++.+.++++.       ..  ++|+.++||| +.+.+...+
T Consensus       221 t~e~a~~~~~--~Gad~i~v-g~-Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kal  296 (393)
T 2qr6_A          221 DYTTALHMMR--TGAVGIIV-GG-GENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAI  296 (393)
T ss_dssp             SHHHHHHHHT--TTCSEEEE-SC-CSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHH
T ss_pred             CHHHHHHHHH--cCCCEEEE-CC-CcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHH
Confidence            3455555551  58999987 32 2222221   112344455444433       22  3999999999 588999999


Q ss_pred             HcCCCEEEEccccc
Q 033625           79 SAGANCIVAGSSVF   92 (115)
Q Consensus        79 ~~Gad~iv~Gsaif   92 (115)
                      .+|||.+.+|+++.
T Consensus       297 alGA~~V~iG~~~l  310 (393)
T 2qr6_A          297 ACGADAVVLGSPLA  310 (393)
T ss_dssp             HHTCSEEEECGGGG
T ss_pred             HcCCCEEEECHHHH
Confidence            99999999999963

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=96.63  E-value=0.014  Score=43.63  Aligned_cols=71  Identities=15%  Similarity=0.120  Sum_probs=52.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|.+.++.+++  -++|.||      ..+++.-..+.++.|+++.+....+.|.+=||||.+|++.+.++|++-|=.++
T Consensus       129 d~~~ale~L~~--lG~~rIL------TSG~~~~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~Ni~~l~~tGv~e~H~Sa  199 (256)
T 1twd_A          129 NPLYTLNNLAE--LGIARVL------TSGQKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSA  199 (256)
T ss_dssp             CHHHHHHHHHH--HTCCEEE------ECTTSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEEECC
T ss_pred             CHHHHHHHHHH--cCCCEEE------CCCCCCCHHHHHHHHHHHHHhhCCcEEEecCCcCHHHHHHHHHcCCCeEeECC
Confidence            45666777661  2688887      22334445678888888876533678899999999999999999999987653

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=96.59  E-value=0.0059  Score=47.48  Aligned_cols=77  Identities=18%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ..+..+... + .++|+|.+- -+.| ......+..++-+.++++..+ ++|+.++|||. .+.+...+..|||.+.+|+
T Consensus       239 ~~e~a~~a~-~-~Gad~I~vs-~~gg-r~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr  314 (368)
T 2nli_A          239 HPEDADMAI-K-RGASGIWVS-NHGA-RQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGR  314 (368)
T ss_dssp             SHHHHHHHH-H-TTCSEEEEC-CGGG-TSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHH-H-cCCCEEEEc-CCCc-CCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence            344444444 1 589999762 2222 111223456666777766433 69999999996 5677788889999999998


Q ss_pred             ccc
Q 033625           90 SVF   92 (115)
Q Consensus        90 aif   92 (115)
                      .++
T Consensus       315 ~~l  317 (368)
T 2nli_A          315 PVL  317 (368)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            854

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=96.56  E-value=0.0099  Score=46.29  Aligned_cols=82  Identities=15%  Similarity=0.200  Sum_probs=53.8

Q ss_pred             HHHhHhCCCCCCEEEEEeeeCCCCC-cccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccC
Q 033625           16 VYPLVEGANPVEMVLVMTVEPGFGG-QKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFG   93 (115)
Q Consensus        16 ~~~~~~~~~~vD~vlvm~v~pG~~g-q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~   93 (115)
                      +...+++ .++|||-+..  +.+.. .+.. ...+.++++++.. ++|+.+-|||+.+.+.++++.| +|.+.+|++++.
T Consensus       261 la~~le~-~Gvd~i~v~~--~~~~~~~~~~-~~~~~~~~vr~~~-~iPvi~~G~i~~~~a~~~l~~g~aD~V~~gR~~l~  335 (376)
T 1icp_A          261 MVESLNK-YDLAYCHVVE--PRMKTAWEKI-ECTESLVPMRKAY-KGTFIVAGGYDREDGNRALIEDRADLVAYGRLFIS  335 (376)
T ss_dssp             HHHHHGG-GCCSEEEEEC--CSCCC-------CCCCSHHHHHHC-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             HHHHHHH-cCCCEEEEcC--CcccCCCCcc-ccHHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHCCCCcEEeecHHHHh
Confidence            3444444 4799997643  11110 0000 0112245555554 6899999999999999999888 999999999998


Q ss_pred             CCCHHHHHH
Q 033625           94 APEPAHVIS  102 (115)
Q Consensus        94 ~~d~~~~~~  102 (115)
                      .+++-+.++
T Consensus       336 ~P~l~~k~~  344 (376)
T 1icp_A          336 NPDLPKRFE  344 (376)
T ss_dssp             CTTHHHHHH
T ss_pred             CccHHHHHH
Confidence            888755543

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=96.55  E-value=0.0082  Score=44.08  Aligned_cols=82  Identities=16%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc--chhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHH-HcCCCEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF--MPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAA-SAGANCI   85 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~--~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~-~~Gad~i   85 (115)
                      ..|.+.++.+++  -++|.||      .-+++.-  ..+.++.|+++.+. ...+.|.+=||||.+|++.+. ++|++-|
T Consensus       133 ~d~~~ale~L~~--lGv~rIL------TSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~  204 (224)
T 2bdq_A          133 SDQKKSIDQLVA--LGFTRIL------LHGSSNGEPIIENIKHIKALVEYANNRIEIMVGGGVTAENYQYICQETGVKQA  204 (224)
T ss_dssp             TTHHHHHHHHHH--TTCCEEE------ECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECSSCCTTTHHHHHHHHTCCEE
T ss_pred             cCHHHHHHHHHH--cCCCEEE------CCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence            345667777762  3799987      2222223  56778888888664 345889999999999999997 6899988


Q ss_pred             EEcccccCCCCHHH
Q 033625           86 VAGSSVFGAPEPAH   99 (115)
Q Consensus        86 v~Gsaif~~~d~~~   99 (115)
                      =..+-+....||.+
T Consensus       205 H~s~i~~~~~~~~~  218 (224)
T 2bdq_A          205 HGTRITQMAGDPLE  218 (224)
T ss_dssp             EETTCC--------
T ss_pred             ccccccCCCCCcch
Confidence            65433444556643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.55  E-value=0.0096  Score=47.98  Aligned_cols=78  Identities=26%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCc-----ccchhHHHHHHHHHhhC--CCCcEEEEcCC-ChhhHHHHHHcCCCEE
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQ-----KFMPEMMDKVRSLRNRY--PSLDIEVDGGL-GPSTIAEAASAGANCI   85 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq-----~~~~~~~~ki~~l~~~~--~~~~i~~dGGI-~~~ni~~l~~~Gad~i   85 (115)
                      +..+.+++  .++|+|.+. ..||....     .+....+..+.++.+..  .++|+.++||| +.+.+..++.+|||.+
T Consensus       284 e~a~~l~~--aGaD~I~Vg-~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V  360 (496)
T 4fxs_A          284 EGARALIE--AGVSAVKVG-IGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCV  360 (496)
T ss_dssp             HHHHHHHH--HTCSEEEEC-SSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHH--hCCCEEEEC-CCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeE
Confidence            44444441  489999753 23443210     01112333344444321  26999999999 5899999999999999


Q ss_pred             EEcccccCC
Q 033625           86 VAGSSVFGA   94 (115)
Q Consensus        86 v~Gsaif~~   94 (115)
                      .+||++...
T Consensus       361 ~iGs~f~~t  369 (496)
T 4fxs_A          361 MVGSMFAGT  369 (496)
T ss_dssp             EESTTTTTB
T ss_pred             EecHHHhcC
Confidence            999997653

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.50  E-value=0.02  Score=46.06  Aligned_cols=79  Identities=24%  Similarity=0.357  Sum_probs=60.7

Q ss_pred             ceEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|.++... ...+.++.+++  .++|.|-+-+.+|      .....++.++++++.++++|+.+-+..+.+.+..+.++
T Consensus       221 ~v~aavG~~~d~~~~a~~l~~--aG~d~I~id~a~g------~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a  292 (496)
T 4fxs_A          221 RVGAAVGAAPGNEERVKALVE--AGVDVLLIDSSHG------HSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA  292 (496)
T ss_dssp             CCEEECCSSSCCHHHHHHHHH--TTCSEEEEECSCT------TSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH
T ss_pred             eeeeeeccccchHHHHHHHHh--ccCceEEeccccc------cchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh
Confidence            356677653 45677777773  4899987665553      22456677889988888899988668899999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||.+++|
T Consensus       293 GaD~I~Vg  300 (496)
T 4fxs_A          293 GVSAVKVG  300 (496)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999986

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=96.41  E-value=0.0081  Score=46.87  Aligned_cols=79  Identities=15%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCC--------------cccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHH
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGG--------------QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIA   75 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~g--------------q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~   75 (115)
                      ...+..+.+.+  .++|+|.+-.- .|..-              ..+...+...+.+++....++|+.++|||. ...+.
T Consensus       218 ~s~e~A~~l~~--aGad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~  294 (365)
T 3sr7_A          218 MDVKTIQTAID--LGVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDII  294 (365)
T ss_dssp             CCHHHHHHHHH--HTCCEEECCCB-C--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHH
T ss_pred             CCHHHHHHHHH--cCCCEEEEeCC-CCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHH
Confidence            44555555551  48999976432 33110              022223445556666655679999999995 67777


Q ss_pred             HHHHcCCCEEEEccccc
Q 033625           76 EAASAGANCIVAGSSVF   92 (115)
Q Consensus        76 ~l~~~Gad~iv~Gsaif   92 (115)
                      ..+.+|||.+.+|++++
T Consensus       295 KaLalGAdaV~ig~~~l  311 (365)
T 3sr7_A          295 KALVLGAKAVGLSRTML  311 (365)
T ss_dssp             HHHHHTCSEEEESHHHH
T ss_pred             HHHHcCCCEEEECHHHH
Confidence            88889999999999865

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*

Probab=96.25  E-value=0.0082  Score=45.04  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=32.4

Q ss_pred             hHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHHH
Q 033625           73 TIAEAASAGANCIVAGSSVFG-APEPAHVISLMRKS  107 (115)
Q Consensus        73 ni~~l~~~Gad~iv~Gsaif~-~~d~~~~~~~l~~~  107 (115)
                      +-.+.+++|+|.+|+|+.|++ ++||.++++++++.
T Consensus       219 TP~~Ai~~GaD~iVVGRpI~~~a~dP~~aa~~i~~~  254 (267)
T 3gdm_A          219 TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKA  254 (267)
T ss_dssp             EHHHHHHTTCSEEEECGGGTSTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCEEEEChhhccCCCCHHHHHHHHHHH
Confidence            777888999999999999999 99999999999876

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=96.21  E-value=0.013  Score=45.89  Aligned_cols=78  Identities=15%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ..+..+.+.+  .++|+|.+-. +.| ......+..++-+.++++.. .++|+.++|||. .+.+...+..|||.+.+|+
T Consensus       262 ~~e~A~~a~~--aGad~I~vs~-~gg-r~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr  337 (392)
T 2nzl_A          262 RGDDAREAVK--HGLNGILVSN-HGA-RQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGR  337 (392)
T ss_dssp             CHHHHHHHHH--TTCCEEEECC-GGG-TSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHH--cCCCEEEeCC-CCC-CcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECH
Confidence            3555555442  5899998621 222 11123345666677776543 369999999996 5778888889999999998


Q ss_pred             cccC
Q 033625           90 SVFG   93 (115)
Q Consensus        90 aif~   93 (115)
                      +++.
T Consensus       338 ~~l~  341 (392)
T 2nzl_A          338 PIVW  341 (392)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8553

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.19  E-value=0.033  Score=44.76  Aligned_cols=79  Identities=25%  Similarity=0.381  Sum_probs=58.9

Q ss_pred             ceEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|+++... ...+.++.+++  .++|+|.+-+.++      ..+...+.++++++.++++|+.+-...+.+.+..+.++
T Consensus       219 ~v~aavG~~~~~~~~a~~l~~--aG~d~I~id~a~g------~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a  290 (490)
T 4avf_A          219 RVGAAVGTGADTGERVAALVA--AGVDVVVVDTAHG------HSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA  290 (490)
T ss_dssp             CCEEEECSSTTHHHHHHHHHH--TTCSEEEEECSCC------SBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT
T ss_pred             eeeeeeccccchHHHHHHHhh--cccceEEecccCC------cchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc
Confidence            356677665 34567777773  4799887654432      23456677888888887888888557899999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||.+++|
T Consensus       291 GaD~I~vg  298 (490)
T 4avf_A          291 GADAVKVG  298 (490)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999985

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1

Probab=96.17  E-value=0.006  Score=48.04  Aligned_cols=65  Identities=23%  Similarity=0.308  Sum_probs=45.5

Q ss_pred             CCCEEEEEeeeC--CCCCcccchhHHHHHHHH-Hh-hCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           25 PVEMVLVMTVEP--GFGGQKFMPEMMDKVRSL-RN-RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        25 ~vD~vlvm~v~p--G~~gq~~~~~~~~ki~~l-~~-~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      .+|.|.+-+..|  |     -..+..+++++. .+ -+++..|++.||||++++..+.+. +|.|.+|+.+.+.+
T Consensus       234 ~~d~IrlDs~~~~~g-----d~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~-vD~~gvGt~l~~~~  302 (395)
T 2i14_A          234 KLFAVRLDTPSSRRG-----NFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDV-VDAFGVGGAIASAK  302 (395)
T ss_dssp             GCCEEEECCCTTTCS-----CHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGG-CSEEEECHHHHTCC
T ss_pred             CCcEEEeCCCCCCcc-----cHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHh-CCEEEeCcccCCCC
Confidence            578888776655  4     112233333322 12 135789999999999999999999 99999999876543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.08  E-value=0.03  Score=44.43  Aligned_cols=69  Identities=25%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CCCCEEEEEeeeCCCCCc-----ccchhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFGGQ-----KFMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq-----~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .++|.|.+ +..||.-..     .+....++-+.++...  ..++|+.++|||+ .+.+..+..+|||.+++|+++..
T Consensus       294 ~Gad~I~v-g~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~  370 (491)
T 1zfj_A          294 AGVDVVKV-GIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG  370 (491)
T ss_dssp             TTCSEEEE-CSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             cCCCEEEE-CccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence            58999976 444442100     0111233344444431  1369999999985 78899999999999999999864

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=95.98  E-value=0.024  Score=46.54  Aligned_cols=79  Identities=18%  Similarity=0.300  Sum_probs=60.5

Q ss_pred             ceEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++|.|+..... .+..+.+++  .++|+|.|-+.+ |     .....++.++.+++.+|+++|.+=.=.|.+....|.++
T Consensus       271 ~VgAAVgv~~d~~eR~~aLv~--AGvD~iviD~ah-G-----hs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a  342 (556)
T 4af0_A          271 YCGAAIGTRPGDKDRLKLLAE--AGLDVVVLDSSQ-G-----NSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA  342 (556)
T ss_dssp             CCEEEECSSHHHHHHHHHHHH--TTCCEEEECCSC-C-----CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH
T ss_pred             eeEEEeccCccHHHHHHHHHh--cCCcEEEEeccc-c-----ccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHc
Confidence            46777775533 456666663  589999875544 2     23356777888888899999988888899999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||++-+|
T Consensus       343 GAD~vkVG  350 (556)
T 4af0_A          343 GADGLRIG  350 (556)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEeec
Confidence            99999988

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=95.97  E-value=0.015  Score=46.09  Aligned_cols=51  Identities=16%  Similarity=0.319  Sum_probs=40.9

Q ss_pred             HHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           51 VRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        51 i~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ++++++... ++|+.+-||| +++.+.++++. +|.+.+|++++..+|+.+.++
T Consensus       308 a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~IanPdlv~ki~  360 (419)
T 3l5a_A          308 NQIVYEHLAGRIPLIASGGINSPESALDALQH-ADMVGMSSPFVTEPDFVHKLA  360 (419)
T ss_dssp             HHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHHCcHHHHHHH
Confidence            455555433 5899999998 79999999999 999999999988888755443

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=95.92  E-value=0.049  Score=38.36  Aligned_cols=93  Identities=15%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh--hhHHHHHHcCCCE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANC   84 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~--~ni~~l~~~Gad~   84 (115)
                      +++.+..+.++.+.+  .++|++.+--.+..|.  .+....++.++++++.. +.++.+++.++.  +.++.+.++|+|.
T Consensus        13 ~D~~~~~~~~~~~~~--~G~~~i~~~~~dg~~~--~~~~~g~~~i~~i~~~~-~~~~~v~l~v~d~~~~i~~~~~~gad~   87 (220)
T 2fli_A           13 ADYANFASELARIEE--TDAEYVHIDIMDGQFV--PNISFGADVVASMRKHS-KLVFDCHLMVVDPERYVEAFAQAGADI   87 (220)
T ss_dssp             SCGGGHHHHHHHHHH--TTCCEEEEEEEBSSSS--SCBCBCHHHHHHHHTTC-CSEEEEEEESSSGGGGHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHH--cCCCEEEEEeecCCCC--CccccCHHHHHHHHHhC-CCCEEEEEeecCHHHHHHHHHHcCCCE
Confidence            444444455555551  4699987654332122  23333466677787764 688999999875  3689999999999


Q ss_pred             EEEcccccCCCCHHHHHHHHHH
Q 033625           85 IVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        85 iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      +.+...-.  +.+.+..+.+++
T Consensus        88 v~vh~~~~--~~~~~~~~~~~~  107 (220)
T 2fli_A           88 MTIHTEST--RHIHGALQKIKA  107 (220)
T ss_dssp             EEEEGGGC--SCHHHHHHHHHH
T ss_pred             EEEccCcc--ccHHHHHHHHHH
Confidence            99986543  566666666654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.81  E-value=0.067  Score=42.56  Aligned_cols=79  Identities=22%  Similarity=0.395  Sum_probs=56.7

Q ss_pred             eEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|..+.+..+ .+.++.+++  .++|.+.+-+. -|     .....++.++++++..+++|+.+-++.+.+.+..+.++|
T Consensus       228 vga~ig~~~~~~~~a~~l~~--aGvd~v~i~~~-~G-----~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G  299 (494)
T 1vrd_A          228 VGAAVGTSPETMERVEKLVK--AGVDVIVIDTA-HG-----HSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAG  299 (494)
T ss_dssp             CEEEECSSTTHHHHHHHHHH--TTCSEEEECCS-CC-----SSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTT
T ss_pred             cccccCcCHhHHHHHHHHHH--hCCCEEEEEec-CC-----chHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcC
Confidence            3445554333 345555552  47899876322 12     234577889999988778999998899999999999999


Q ss_pred             CCEEEEcc
Q 033625           82 ANCIVAGS   89 (115)
Q Consensus        82 ad~iv~Gs   89 (115)
                      +|.++++.
T Consensus       300 ~d~I~v~~  307 (494)
T 1vrd_A          300 ADAVKVGV  307 (494)
T ss_dssp             CSEEEECS
T ss_pred             CCEEEEcC
Confidence            99999953

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=95.75  E-value=0.082  Score=36.98  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=52.1

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCC--hhh-HHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLG--PST-IAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~--~~n-i~~   76 (115)
                      ||.=++++..+.-+.++-+..-.+.+|++.+..        ++ ....++-++++|+.++++|+.++=-+.  .+. ++.
T Consensus         1 m~li~a~D~~~~~~~~~~~~~~~~~~diie~G~--------p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~   72 (211)
T 3f4w_A            1 MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGT--------PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQL   72 (211)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHHGGGCSEEEECH--------HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHH
T ss_pred             CcEEEEeCCCCHHHHHHHHHHhhcCccEEEeCc--------HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHH
Confidence            566677776554443332221014788876532        23 344566788888876778886654443  345 889


Q ss_pred             HHHcCCCEEEEccc
Q 033625           77 AASAGANCIVAGSS   90 (115)
Q Consensus        77 l~~~Gad~iv~Gsa   90 (115)
                      +.++|||.+++...
T Consensus        73 ~~~~Gad~v~v~~~   86 (211)
T 3f4w_A           73 LFDAGADYVTVLGV   86 (211)
T ss_dssp             HHHTTCSEEEEETT
T ss_pred             HHhcCCCEEEEeCC
Confidence            99999999999754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=95.71  E-value=0.072  Score=43.01  Aligned_cols=79  Identities=25%  Similarity=0.384  Sum_probs=59.7

Q ss_pred             ceEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      .+|+++... ...+.++.+++  .++|.|.+-+.+|.      ....++.++++++.+++.++.+-+-.+.+....+.++
T Consensus       246 ~V~aavg~~~d~~era~aLve--aGvd~I~Id~a~g~------~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a  317 (511)
T 3usb_A          246 LVGAAVGVTADAMTRIDALVK--ASVDAIVLDTAHGH------SQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA  317 (511)
T ss_dssp             CCEEEECSSTTHHHHHHHHHH--TTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH
T ss_pred             eeeeeeeeccchHHHHHHHHh--hccceEEecccccc------hhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh
Confidence            356777654 33566666663  48999988766653      2346678899998888888887666789999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||.+++|
T Consensus       318 Gad~i~vg  325 (511)
T 3usb_A          318 GANVVKVG  325 (511)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEEEC
Confidence            99999985

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=95.61  E-value=0.11  Score=38.38  Aligned_cols=82  Identities=18%  Similarity=0.219  Sum_probs=57.5

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh-hHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-TIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~-ni~~l~~~Gad~iv~G   88 (115)
                      ..|++..+.|..  .+++.|-+++-..-|.|      ..+.++++++.. ++|+..-++|..+ .+.+...+|||.+.++
T Consensus        65 ~~p~~~A~~~~~--~GA~~isvlt~~~~f~G------~~~~l~~i~~~v-~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~  135 (254)
T 1vc4_A           65 VDPVEAALAYAR--GGARAVSVLTEPHRFGG------SLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLI  135 (254)
T ss_dssp             CCHHHHHHHHHH--TTCSEEEEECCCSSSCC------CHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred             CCHHHHHHHHHH--cCCCEEEEecchhhhcc------CHHHHHHHHHhc-CCCEEECCcCCCHHHHHHHHHcCCCEEEEC
Confidence            455677777772  57999988654443444      334566776654 7999887776655 8899999999999999


Q ss_pred             ccccCCCCHHHHH
Q 033625           89 SSVFGAPEPAHVI  101 (115)
Q Consensus        89 saif~~~d~~~~~  101 (115)
                      .+.+. +...+.+
T Consensus       136 ~~~l~-~~l~~l~  147 (254)
T 1vc4_A          136 VALLG-ELTGAYL  147 (254)
T ss_dssp             HHHHG-GGHHHHH
T ss_pred             ccchH-HHHHHHH
Confidence            88776 4444333

>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A*

Probab=95.60  E-value=0.026  Score=43.78  Aligned_cols=62  Identities=16%  Similarity=0.252  Sum_probs=41.3

Q ss_pred             HHHHHhhCCCCcEEEEc-CCChhhHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           51 VRSLRNRYPSLDIEVDG-GLGPSTIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        51 i~~l~~~~~~~~i~~dG-GI~~~ni~~l------~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      ++.+|+..+++++.+=| |-...+..++      .+.|+|.+++|+.|.+++||.++++++++.+.+.+
T Consensus       268 ~~~iR~~~p~~~iLtPGIGAQggDq~rv~tp~~a~~~g~~~ivVGR~I~~A~dP~~Aa~~i~~ei~~~l  336 (342)
T 3n3m_A          268 MNYIRTYFPNCYILSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAIL  336 (342)
T ss_dssp             HHHHHHHSTTCCEEECCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeCCCCcCCCCHHHHHhhhhhhhcCceEEEcChhhhcCCCHHHHHHHHHHHHHHHH
Confidence            44445544566554422 2222333332      12588999999999999999999999999887654

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=95.53  E-value=0.092  Score=40.86  Aligned_cols=78  Identities=24%  Similarity=0.370  Sum_probs=53.2

Q ss_pred             eEEEecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|+++... ...+.++.+++  .++|+|.+-+. .|     ..+..++.++++++.++++++.+-...+.+.+..+.++|
T Consensus        99 vga~vg~~~~~~~~~~~lie--aGvd~I~idta-~G-----~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG  170 (366)
T 4fo4_A           99 VGAAVGAAPGNEERVKALVE--AGVDVLLIDSS-HG-----HSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG  170 (366)
T ss_dssp             CEEECCSCTTCHHHHHHHHH--TTCSEEEEECS-CT-----TSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT
T ss_pred             EEEEeccChhHHHHHHHHHh--CCCCEEEEeCC-CC-----CCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC
Confidence            45555432 22456666663  58998764321 22     123566778888888778877664468999999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      ||.+++|
T Consensus       171 AD~I~vG  177 (366)
T 4fo4_A          171 VSAVKVG  177 (366)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEe
Confidence            9999995

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=95.51  E-value=0.03  Score=43.58  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=35.8

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccccc
Q 033625           49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .-|.++++..+++|+.++|||. ...+...+.+|||.+-+|+.++
T Consensus       256 ~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l  300 (368)
T 3vkj_A          256 ASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVL  300 (368)
T ss_dssp             HHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             HHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence            4456666666679999999976 6788888889999999998855

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=95.50  E-value=0.052  Score=43.94  Aligned_cols=76  Identities=20%  Similarity=0.243  Sum_probs=49.1

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC------CCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY------PSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~------~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .+...... + .++|+|.+-. +.|. .-...+..++-+.++++..      .++||.++|||. .+.+...+.+|||.+
T Consensus       354 ~e~A~~a~-~-aGad~I~vs~-hgG~-~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV  429 (511)
T 1kbi_A          354 TEDVIKAA-E-IGVSGVVLSN-HGGR-QLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGV  429 (511)
T ss_dssp             HHHHHHHH-H-TTCSEEEECC-TTTT-SSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHH-H-cCCCEEEEcC-CCCc-cCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEE
Confidence            44444444 2 5899998732 3332 1111233455555554432      479999999997 567777788999999


Q ss_pred             EEccccc
Q 033625           86 VAGSSVF   92 (115)
Q Consensus        86 v~Gsaif   92 (115)
                      .+|+.++
T Consensus       430 ~iGr~~l  436 (511)
T 1kbi_A          430 GLGRPFL  436 (511)
T ss_dssp             EECHHHH
T ss_pred             EECHHHH
Confidence            9998854

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=95.46  E-value=0.033  Score=44.77  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=49.3

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCC--Cc---ccchhHHHHHHHHHhh--------CCCCcEEEEcCCC-hhhHHHHH
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFG--GQ---KFMPEMMDKVRSLRNR--------YPSLDIEVDGGLG-PSTIAEAA   78 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~--gq---~~~~~~~~ki~~l~~~--------~~~~~i~~dGGI~-~~ni~~l~   78 (115)
                      .+..+.+++  .++|++.+ +..||..  ..   .+....+.-+.++.+.        ..++|+.+||||. ...+...+
T Consensus       295 ~~~a~~l~~--aGad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAl  371 (503)
T 1me8_A          295 GEGFRYLAD--AGADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLAL  371 (503)
T ss_dssp             HHHHHHHHH--HTCSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHH
T ss_pred             HHHHHHHHH--hCCCeEEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHH
Confidence            344444441  47999988 8888752  11   1111123333333221        1259999999997 66777888


Q ss_pred             HcCCCEEEEccccc
Q 033625           79 SAGANCIVAGSSVF   92 (115)
Q Consensus        79 ~~Gad~iv~Gsaif   92 (115)
                      .+|||.+.+|+.+.
T Consensus       372 alGA~~V~iG~~~~  385 (503)
T 1me8_A          372 AMGADFIMLGRYFA  385 (503)
T ss_dssp             HTTCSEEEESHHHH
T ss_pred             HcCCCEEEECchhh
Confidence            99999999999874

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=95.25  E-value=0.18  Score=39.22  Aligned_cols=67  Identities=22%  Similarity=0.546  Sum_probs=48.9

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +.++.+++  .++|.|.+   +++.+   ......+.++++++..+++|+.+-+..+.+.+..+.++|+|.+++|
T Consensus       156 ~~a~~~~~--~G~d~i~i---~~~~g---~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg  222 (404)
T 1eep_A          156 ERVEELVK--AHVDILVI---DSAHG---HSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG  222 (404)
T ss_dssp             HHHHHHHH--TTCSEEEE---CCSCC---SSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEEC
T ss_pred             HHHHHHHH--CCCCEEEE---eCCCC---ChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEEC
Confidence            44444442  57898865   33322   1245677788888887678998877788999999999999999994

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=95.19  E-value=0.058  Score=38.62  Aligned_cols=58  Identities=14%  Similarity=0.412  Sum_probs=44.8

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc-ccCC
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS-VFGA   94 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa-if~~   94 (115)
                      ..|++-+|   ||     ..|..   |+++++. .++|+.+-|+|+ .+.+....++||+.++.+.. +|+.
T Consensus       127 ~PD~iEiL---PG-----i~p~i---I~~i~~~-~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~  186 (192)
T 3kts_A          127 QPDCIELL---PG-----IIPEQ---VQKMTQK-LHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG  186 (192)
T ss_dssp             CCSEEEEE---CT-----TCHHH---HHHHHHH-HCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred             CCCEEEEC---Cc-----hhHHH---HHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence            57999887   77     33444   5555554 379999999996 67888899999999999955 8864

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=95.11  E-value=0.059  Score=43.17  Aligned_cols=60  Identities=25%  Similarity=0.318  Sum_probs=47.4

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .+|++|+-+ ..|-+|+.|.-..+      .. ....|+...||+|++|+.+.++.++..+=+.|.+=
T Consensus       372 ~~d~~LlD~-~~GGtG~~fdW~~l------~~-~~~~p~iLAGGL~p~NV~~ai~~~p~gvDvsSGVE  431 (452)
T 1pii_A          372 HVDKYVLDN-GQGGSGQRFDWSLL------NG-QSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVE  431 (452)
T ss_dssp             TCCEEEEES-CSCCSSCCCCGGGG------TT-SCCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGE
T ss_pred             cccEEEecC-CCCCCCCccCHHHh------hc-ccCCcEEEEcCCCHHHHHHHHhcCCCEEEeCCcee
Confidence            479999887 55778998875432      12 23678999999999999887779999999999884

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=95.07  E-value=0.071  Score=38.31  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=46.0

Q ss_pred             CCEEEEEe--eeCCCCCccc-------------chhHHHHHHHHHhhCCCCcEEEEcCCCh-------hhHHHHHHcCCC
Q 033625           26 VEMVLVMT--VEPGFGGQKF-------------MPEMMDKVRSLRNRYPSLDIEVDGGLGP-------STIAEAASAGAN   83 (115)
Q Consensus        26 vD~vlvm~--v~pG~~gq~~-------------~~~~~~ki~~l~~~~~~~~i~~dGGI~~-------~ni~~l~~~Gad   83 (115)
                      +|+|-+..  ..|-.+|...             ....++-++++++.. ++|+.+-+++++       +.++.+.++|||
T Consensus        32 ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad  110 (248)
T 1geq_A           32 AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVD  110 (248)
T ss_dssp             BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC-CCCEEEEECHHHHHHHCHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC-CCCEEEEeccchhhhcCHHHHHHHHHHCCCC
Confidence            89987641  2344544321             133467788888764 688888887785       788899999999


Q ss_pred             EEEEcccc
Q 033625           84 CIVAGSSV   91 (115)
Q Consensus        84 ~iv~Gsai   91 (115)
                      .++++..-
T Consensus       111 ~v~~~~~~  118 (248)
T 1geq_A          111 GILVVDLP  118 (248)
T ss_dssp             EEEETTCC
T ss_pred             EEEECCCC
Confidence            99998643

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=94.96  E-value=0.13  Score=40.62  Aligned_cols=76  Identities=20%  Similarity=0.363  Sum_probs=53.1

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA   82 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga   82 (115)
                      +|.++.+.. .+.++.+++  .++|+|.+-+. .|     ......+.++++++.. +.++.+-+-.+.+.+..+.++||
T Consensus       137 v~~~v~~~~-~e~~~~lve--aGvdvIvldta-~G-----~~~~~~e~I~~ik~~~-~i~Vi~g~V~t~e~A~~a~~aGA  206 (400)
T 3ffs_A          137 VGAAIGVNE-IERAKLLVE--AGVDVIVLDSA-HG-----HSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGA  206 (400)
T ss_dssp             CEEEECCC--CHHHHHHHH--HTCSEEEECCS-CC-----SBHHHHHHHHHHHTTC-CCEEEEEEECSHHHHHHHHHTTC
T ss_pred             EEeecCCCH-HHHHHHHHH--cCCCEEEEeCC-CC-----CcccHHHHHHHHHhcC-CCeEEEeecCCHHHHHHHHHcCC
Confidence            567777665 677777773  48998864322 12     1233456678887765 67777645578999999999999


Q ss_pred             CEEEEc
Q 033625           83 NCIVAG   88 (115)
Q Consensus        83 d~iv~G   88 (115)
                      |.+++|
T Consensus       207 D~I~vG  212 (400)
T 3ffs_A          207 DGIKVG  212 (400)
T ss_dssp             SEEEEC
T ss_pred             CEEEEe
Confidence            999996

>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*

Probab=94.95  E-value=0.15  Score=33.95  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=54.4

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC--ChhhH----HHHHH
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL--GPSTI----AEAAS   79 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI--~~~ni----~~l~~   79 (115)
                      +.+.+|.+.+.+...+ ..+|.|.+-+....+.     +...+-++++++... ++++.+-|..  ..+..    +.+.+
T Consensus        37 lG~~~p~e~~v~~a~~-~~~d~v~lS~~~~~~~-----~~~~~~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~  110 (137)
T 1ccw_A           37 IGVLSPQELFIKAAIE-TKADAILVSSLYGQGE-----IDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKD  110 (137)
T ss_dssp             EEEEECHHHHHHHHHH-HTCSEEEEEECSSTHH-----HHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHh-cCCCEEEEEecCcCcH-----HHHHHHHHHHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHH
Confidence            4566788777666643 5799998765553211     122233555555533 5777665542  23443    45899


Q ss_pred             cCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        80 ~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      .|+|.+.-     ...+..+.++++++.+
T Consensus       111 ~G~d~~~~-----~g~~~~~~~~~l~~~~  134 (137)
T 1ccw_A          111 MGYDRVYA-----PGTPPEVGIADLKKDL  134 (137)
T ss_dssp             TTCSEECC-----TTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEC-----CCCCHHHHHHHHHHHh
Confidence            99997632     2357778888877654

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=94.85  E-value=0.31  Score=37.65  Aligned_cols=76  Identities=20%  Similarity=0.389  Sum_probs=54.2

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA   82 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga   82 (115)
                      +|+.+...+ .+.++.+++  .++|+|.+   +...+   .....++.++++++.. ++|+.+-+-.+.+.+..+.++||
T Consensus        98 vga~ig~~~-~e~a~~l~e--aGad~I~l---d~a~G---~~~~~~~~i~~i~~~~-~~~Vivg~v~t~e~A~~l~~aGa  167 (361)
T 3khj_A           98 VGAAIGVNE-IERAKLLVE--AGVDVIVL---DSAHG---HSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGA  167 (361)
T ss_dssp             CEEEECTTC-HHHHHHHHH--TTCSEEEE---CCSCC---SBHHHHHHHHHHHHHC-CCEEEEEEECSHHHHHHHHHTTC
T ss_pred             EEEEeCCCH-HHHHHHHHH--cCcCeEEE---eCCCC---CcHHHHHHHHHHHHhc-CCcEEEccCCCHHHHHHHHHcCc
Confidence            566666655 677777763  47998854   32221   1234556788888776 78888766689999999999999


Q ss_pred             CEEEEc
Q 033625           83 NCIVAG   88 (115)
Q Consensus        83 d~iv~G   88 (115)
                      |.+.+|
T Consensus       168 D~I~VG  173 (361)
T 3khj_A          168 DGIKVG  173 (361)
T ss_dssp             SEEEEC
T ss_pred             CEEEEe
Confidence            999996

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=94.82  E-value=0.42  Score=30.28  Aligned_cols=78  Identities=9%  Similarity=0.088  Sum_probs=52.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCC-CHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAP-EPAH   99 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~-d~~~   99 (115)
                      ...|.|++-.--|+.       ..++-++++++  ..+++|+.+ .+.-+.+......++|++.++     .+.- ++.+
T Consensus        50 ~~~dlii~D~~l~~~-------~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l-----~Kp~~~~~~  117 (144)
T 3kht_A           50 AKYDLIILDIGLPIA-------NGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVV-----DKSSNNVTD  117 (144)
T ss_dssp             CCCSEEEECTTCGGG-------CHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEE-----ECCTTSHHH
T ss_pred             CCCCEEEEeCCCCCC-------CHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEE-----ECCCCcHHH
Confidence            468888764444442       35666788887  456777665 455678888889999999874     3455 6777


Q ss_pred             HHHHHHHHHHHHhh
Q 033625          100 VISLMRKSVEDAQK  113 (115)
Q Consensus       100 ~~~~l~~~~~~~~~  113 (115)
                      -...++..++.+.+
T Consensus       118 l~~~i~~~l~~~~~  131 (144)
T 3kht_A          118 FYGRIYAIFSYWLT  131 (144)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777765544

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=94.61  E-value=0.15  Score=39.25  Aligned_cols=69  Identities=22%  Similarity=0.395  Sum_probs=48.7

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +.++.+++..+++|.+.+- ...|     ..+..++.++++++..+++|+.+-+..+.+....+.++|||+++++
T Consensus       121 ~~~~~l~~~~~g~~~i~i~-~~~g-----~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~  189 (351)
T 2c6q_A          121 EQLEQILEAIPQVKYICLD-VANG-----YSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVG  189 (351)
T ss_dssp             HHHHHHHHHCTTCCEEEEE-CSCT-----TBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHhccCCCCEEEEE-ecCC-----CcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence            3444555211268876532 2222     2245678899999887778888877889999999999999999875

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}

Probab=94.49  E-value=0.058  Score=39.71  Aligned_cols=72  Identities=15%  Similarity=0.121  Sum_probs=50.8

Q ss_pred             EEEeeeCC---CCCcccchhHHHH-HHHHHhhC-CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCCHHHHH
Q 033625           30 LVMTVEPG---FGGQKFMPEMMDK-VRSLRNRY-PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        30 lvm~v~pG---~~gq~~~~~~~~k-i~~l~~~~-~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ++++-+|-   -+|....++..+. .+.+|+.. .+++|.-=|+++++|+.++ .+.++|++-+|++.++++++.+.+
T Consensus       153 ~vIAYEPvWAIGTG~~At~e~a~ev~~~IR~~l~~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsl~a~~f~~ii  230 (233)
T 2jgq_A          153 LVVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELENFKTII  230 (233)
T ss_dssp             EEEEECCGGGTTC--CCCHHHHHHHHHHHHHHSCTTSCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSHHHHHHHH
T ss_pred             eEEEEeCHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEcCCcChhhHHHHhcCCCCCeeEecHHHhChHHHHHHH
Confidence            34567772   1455555555444 33455554 5789999999999999986 678999999999998877665543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=94.48  E-value=0.1  Score=43.10  Aligned_cols=52  Identities=19%  Similarity=0.224  Sum_probs=41.8

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      +.++++++.. ++|+.+-|||+ ++...++++.| +|.+.+|++.+..+++-+.+
T Consensus       284 ~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~  337 (690)
T 3k30_A          284 EFVAGLKKLT-TKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKI  337 (690)
T ss_dssp             HHHTTSGGGC-SSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHc-CCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHH
Confidence            3355555554 79999999996 89999988887 99999999999888875544

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=94.48  E-value=0.1  Score=43.49  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=43.7

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           48 MDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      ++.++++++.. ++|+.+-||| +++...++++.| +|.+.+|++++..+++-+.+
T Consensus       280 ~~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~  334 (729)
T 1o94_A          280 IPWVKLVKQVS-KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKV  334 (729)
T ss_dssp             HHHHHHHHTTC-SSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHC-CCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHH
Confidence            44566777664 7999999999 599999999888 99999999998888875544

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=94.36  E-value=0.16  Score=39.59  Aligned_cols=67  Identities=21%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +.++.+++  .++|+|.+-+ ..|+.     ....+.++++++..+++++.+=+-.|.+....+.++|||.+++|
T Consensus       103 e~~~~a~~--aGvdvI~id~-a~G~~-----~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg  169 (361)
T 3r2g_A          103 QRAEALRD--AGADFFCVDV-AHAHA-----KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAG  169 (361)
T ss_dssp             HHHHHHHH--TTCCEEEEEC-SCCSS-----HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHH--cCCCEEEEeC-CCCCc-----HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEc
Confidence            45555552  4799665432 22432     34456688888776678877734579999999999999999985

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=94.31  E-value=0.11  Score=38.63  Aligned_cols=71  Identities=18%  Similarity=0.282  Sum_probs=49.4

Q ss_pred             EEeeeCC---CCCcccchhHHHHHH-HHHhh---------CCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcccccCCCC
Q 033625           31 VMTVEPG---FGGQKFMPEMMDKVR-SLRNR---------YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAPE   96 (115)
Q Consensus        31 vm~v~pG---~~gq~~~~~~~~ki~-~l~~~---------~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gsaif~~~d   96 (115)
                      ++.-+|-   -+|..-.++..+.+. .+|+.         ..+++|.-=|+++++|+.++... ++|++-+|++..++++
T Consensus       162 vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~  241 (250)
T 1yya_A          162 VIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELES  241 (250)
T ss_dssp             EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSSHHH
T ss_pred             EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHhChHH
Confidence            3467772   145555544444432 23332         24689999999999999999877 9999999999988776


Q ss_pred             HHHHH
Q 033625           97 PAHVI  101 (115)
Q Consensus        97 ~~~~~  101 (115)
                      +.+-+
T Consensus       242 F~~ii  246 (250)
T 1yya_A          242 FLALL  246 (250)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*

Probab=94.17  E-value=0.093  Score=38.50  Aligned_cols=76  Identities=17%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             HhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           20 VEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        20 ~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      +.+.+.+...++|+..|-..........++++.++++    ....+ -.+.+|.|.+- ....+.|++.+=+||+||.+.
T Consensus       153 i~~~~~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~~~~~-~~LSmGmS~d~-~~Ai~~G~t~vRvGt~iFg~r  230 (245)
T 3sy1_A          153 VAELPRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHI-DTLALGQSDDM-EAAIAAGSTMVAIGTAIFGAR  230 (245)
T ss_dssp             HTTCTTEEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTSTTC-CEEECCCSTTH-HHHHHHTCCEEEESHHHHCC-
T ss_pred             HHcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEeccCcHhH-HHHHHcCCCEEECchHHhCCC
Confidence            3334678999999865533332223345666666544    23233 46788877664 444678999999999999877


Q ss_pred             CH
Q 033625           96 EP   97 (115)
Q Consensus        96 d~   97 (115)
                      ++
T Consensus       231 ~y  232 (245)
T 3sy1_A          231 DY  232 (245)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=94.17  E-value=0.22  Score=38.32  Aligned_cols=74  Identities=16%  Similarity=0.245  Sum_probs=50.9

Q ss_pred             CCCEEEEEeee-CCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVE-PGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~-pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .+|++-+..-. ++..+....+.....++   +.. ..++.+-|+.+++...++++.| +|.+.+|+.+...+|+-+.++
T Consensus       254 ~~~~i~~~~~~~~~~~~~~~~~~~a~~ik---~~~-~~~v~~~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~~  329 (358)
T 4a3u_A          254 DIAFLGMREGAVDGTFGKTDQPKLSPEIR---KVF-KPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFF  329 (358)
T ss_dssp             TCSEEEEECCBTTCSSSBCSSCCCHHHHH---HHC-CSCEEEESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             CccccccccccccCcccccccHHHHHHHH---Hhc-CCcEEEeCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHHH
Confidence            67887664321 22222333334434444   332 5788899999999999999988 999999999999999865544

>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...

Probab=94.15  E-value=0.2  Score=37.17  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             EEEeeeCC---CCCcccchhHHHHHH-HHHhh----C-----CCCcEEEEcCCChhhHHHHH-HcCCCEEEEcccccCCC
Q 033625           30 LVMTVEPG---FGGQKFMPEMMDKVR-SLRNR----Y-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~pG---~~gq~~~~~~~~ki~-~l~~~----~-----~~~~i~~dGGI~~~ni~~l~-~~Gad~iv~Gsaif~~~   95 (115)
                      ++++-+|-   -+|..-.++..+.+. .+|+.    +     .+++|.-=|+++++|+.++. +.++|++-+|++.++ +
T Consensus       162 ~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~  240 (250)
T 2j27_A          162 VVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLK-P  240 (250)
T ss_dssp             EEEEEECGGGTTSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS-T
T ss_pred             EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeeehHHHH-H
Confidence            34577772   145555544444433 23332    1     24889999999999999987 899999999999998 8


Q ss_pred             CHHHHHH
Q 033625           96 EPAHVIS  102 (115)
Q Consensus        96 d~~~~~~  102 (115)
                      ++.+-++
T Consensus       241 ~F~~ii~  247 (250)
T 2j27_A          241 EFVDIIK  247 (250)
T ss_dssp             THHHHHH
T ss_pred             HHHHHHH
Confidence            8876543

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=94.10  E-value=0.17  Score=37.71  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|.+..+.|.+  .++++|=+.+ .++     |....++-++++++.. ++|+. =|..|++..+.+...+|||.+.++.
T Consensus        73 ~p~~~A~~y~~--~GA~~isvlt-d~~-----~f~Gs~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~  143 (272)
T 3qja_A           73 DPAKLAQAYQD--GGARIVSVVT-EQR-----RFQGSLDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIV  143 (272)
T ss_dssp             CHHHHHHHHHH--TTCSEEEEEC-CGG-----GHHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEG
T ss_pred             CHHHHHHHHHH--cCCCEEEEec-Chh-----hcCCCHHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEec
Confidence            45566666652  5899986653 333     2233456677777764 56655 4567777789999999999999997


Q ss_pred             cccC
Q 033625           90 SVFG   93 (115)
Q Consensus        90 aif~   93 (115)
                      +...
T Consensus       144 a~l~  147 (272)
T 3qja_A          144 AALE  147 (272)
T ss_dssp             GGSC
T ss_pred             ccCC
Confidence            7664

>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A

Probab=93.92  E-value=0.42  Score=35.57  Aligned_cols=70  Identities=21%  Similarity=0.316  Sum_probs=48.8

Q ss_pred             EEeeeC----CCCCcccchhHHHHHH-HHHhh---------CCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcccccCCC
Q 033625           31 VMTVEP----GFGGQKFMPEMMDKVR-SLRNR---------YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAP   95 (115)
Q Consensus        31 vm~v~p----G~~gq~~~~~~~~ki~-~l~~~---------~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gsaif~~~   95 (115)
                      ++.-+|    | +|....++..+.+. .+|+.         ..+++|.-=|+++++|+.++... ++|++-+|++-++++
T Consensus       166 vIAYEPvWAIG-TG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~  244 (257)
T 2yc6_A          166 VIAYEPVWSIG-TGVVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGSNNEKLGQCPNIDGFLVGGASLKPE  244 (257)
T ss_dssp             EEEECCGGGTT-TSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSTH
T ss_pred             EEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccCHHHHHHHHcCCCCCeeeecHHHHHHH
Confidence            446777    4 45554444444332 23332         24689999999999999999877 999999999998876


Q ss_pred             CHHHHHH
Q 033625           96 EPAHVIS  102 (115)
Q Consensus        96 d~~~~~~  102 (115)
                       ..+-++
T Consensus       245 -F~~Ii~  250 (257)
T 2yc6_A          245 -FMTMID  250 (257)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHH
Confidence             655443

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A

Probab=93.90  E-value=0.12  Score=38.36  Aligned_cols=43  Identities=12%  Similarity=0.284  Sum_probs=37.0

Q ss_pred             CCCcEEEEcCCChhhHHHHH-HcCCCEEEEcccccCCCCHHHHH
Q 033625           59 PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        59 ~~~~i~~dGGI~~~ni~~l~-~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      .+++|.-=|+++++|+.++. +.++|++-+|++-.+++++.+-+
T Consensus       203 ~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii  246 (252)
T 2btm_A          203 EAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLV  246 (252)
T ss_dssp             TTSEEEEESSCCTTTHHHHHTSTTCCEEEESGGGSSHHHHHHHH
T ss_pred             CceeEEEcCCCCHHHHHHHHcCCCCCeeEecHHHhChHHHHHHH
Confidence            46899999999999999987 89999999999988876665444

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*

Probab=93.89  E-value=0.19  Score=37.20  Aligned_cols=72  Identities=15%  Similarity=0.298  Sum_probs=50.7

Q ss_pred             EEEeeeCCC---CCcccchhHHHHHH-HHHhh----C-----CCCcEEEEcCCChhhHHHHHH-cCCCEEEEcccccCCC
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDKVR-SLRNR----Y-----PSLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~ki~-~l~~~----~-----~~~~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif~~~   95 (115)
                      ++++-+|-.   +|..-.++..+.+. .+|+.    +     .+++|.-=|+++++|+.++.. .++|++-+|++.++ +
T Consensus       160 ~vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~  238 (248)
T 1o5x_A          160 VILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-E  238 (248)
T ss_dssp             EEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGGS-T
T ss_pred             EEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCCCHHHHHHHHcCCCCCeeEeeHHHHH-H
Confidence            355777822   45555544444432 33332    2     248899999999999999876 99999999999999 8


Q ss_pred             CHHHHHH
Q 033625           96 EPAHVIS  102 (115)
Q Consensus        96 d~~~~~~  102 (115)
                      ++.+-++
T Consensus       239 ~F~~ii~  245 (248)
T 1o5x_A          239 SFVDIIK  245 (248)
T ss_dssp             THHHHHH
T ss_pred             HHHHHHH
Confidence            8876554

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=93.85  E-value=0.3  Score=40.12  Aligned_cols=80  Identities=23%  Similarity=0.332  Sum_probs=49.0

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--C-------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHH
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--G-------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEA   77 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~-------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l   77 (115)
                      |..|. +..+.++.  .++|.|-| .+-||.  +       |-+.. ...-...+.++.+ ++||.+||||+ ...+...
T Consensus       329 NVaT~-e~a~~Li~--aGAD~vkV-GiGpGSiCtTr~v~GvG~PQ~-tAi~~~a~~a~~~-~vpvIADGGI~~sGDi~KA  402 (556)
T 4af0_A          329 NVVTR-EQAAQLIA--AGADGLRI-GMGSGSICITQEVMAVGRPQG-TAVYAVAEFASRF-GIPCIADGGIGNIGHIAKA  402 (556)
T ss_dssp             EECSH-HHHHHHHH--HTCSEEEE-CSSCSTTBCCTTTCCSCCCHH-HHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHH
T ss_pred             cccCH-HHHHHHHH--cCCCEEee-cCCCCcccccccccCCCCcHH-HHHHHHHHHHHHc-CCCEEecCCcCcchHHHHH
Confidence            34444 33344441  47998865 466763  1       11211 2222233333332 69999999997 4577777


Q ss_pred             HHcCCCEEEEcccccC
Q 033625           78 ASAGANCIVAGSSVFG   93 (115)
Q Consensus        78 ~~~Gad~iv~Gsaif~   93 (115)
                      +.+|||.+-+||.+-+
T Consensus       403 laaGAd~VMlGsllAG  418 (556)
T 4af0_A          403 LALGASAVMMGGLLAG  418 (556)
T ss_dssp             HHTTCSEEEESTTTTT
T ss_pred             hhcCCCEEEEchhhcc
Confidence            8999999999987754

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=93.85  E-value=0.61  Score=28.88  Aligned_cols=75  Identities=19%  Similarity=0.234  Sum_probs=52.5

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ...|.|++-..-|+..       .++-++++++..  +..+|.+..+-+.+.+....++|++.+     |.+.-++.+-.
T Consensus        49 ~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~  116 (132)
T 3lte_A           49 FEPAIMTLDLSMPKLD-------GLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDY-----LEKPFDNDALL  116 (132)
T ss_dssp             TCCSEEEEESCBTTBC-------HHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEE-----ECSSCCHHHHH
T ss_pred             cCCCEEEEecCCCCCC-------HHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHH-----hhCCCCHHHHH
Confidence            4689888765566643       455677777764  467888888888888888999999877     44545677666


Q ss_pred             HHHHHHHHH
Q 033625          102 SLMRKSVED  110 (115)
Q Consensus       102 ~~l~~~~~~  110 (115)
                      ..+++....
T Consensus       117 ~~i~~~~~~  125 (132)
T 3lte_A          117 DRIHDLVNE  125 (132)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHcCC
Confidence            666665543

>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A

Probab=93.69  E-value=0.078  Score=39.51  Aligned_cols=72  Identities=17%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             EEeeeCCC---CCcccchhHHHHHH-HHHhh--------CCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcccccCCCCH
Q 033625           31 VMTVEPGF---GGQKFMPEMMDKVR-SLRNR--------YPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAPEP   97 (115)
Q Consensus        31 vm~v~pG~---~gq~~~~~~~~ki~-~l~~~--------~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gsaif~~~d~   97 (115)
                      ++.-+|-.   +|..-.++..+.+. .+|+.        ..+++|.-=|+++++|+.++... ++|++-+|++.++++++
T Consensus       165 vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F  244 (256)
T 1aw2_A          165 IIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSF  244 (256)
T ss_dssp             EEEECCTTTTTSSCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHTTSTTCCEEEESGGGGCHHHH
T ss_pred             EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeecHHHhChHHH
Confidence            34677732   45555554444433 33332        12478999999999999999777 99999999999987776


Q ss_pred             HHHHH
Q 033625           98 AHVIS  102 (115)
Q Consensus        98 ~~~~~  102 (115)
                      .+-++
T Consensus       245 ~~Ii~  249 (256)
T 1aw2_A          245 AAIAK  249 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=93.58  E-value=0.65  Score=34.68  Aligned_cols=78  Identities=21%  Similarity=0.167  Sum_probs=52.7

Q ss_pred             ecCC-CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCE
Q 033625            7 LKPG-TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         7 l~p~-t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~   84 (115)
                      |+++ .|.+....|.+  .+++.|=+++ .|+|-+     ..++-++++++.. ++|+.. |+-+++..+.+...+|||.
T Consensus        75 i~~~~dp~~~A~~y~~--~GA~~IsVlt-d~~~f~-----Gs~~~L~~ir~~v-~lPVl~Kdfi~d~~qi~ea~~~GAD~  145 (272)
T 3tsm_A           75 IRPDFDPPALAKAYEE--GGAACLSVLT-DTPSFQ-----GAPEFLTAARQAC-SLPALRKDFLFDPYQVYEARSWGADC  145 (272)
T ss_dssp             SCSSCCHHHHHHHHHH--TTCSEEEEEC-CSTTTC-----CCHHHHHHHHHTS-SSCEEEESCCCSTHHHHHHHHTTCSE
T ss_pred             cCCCCCHHHHHHHHHH--CCCCEEEEec-cccccC-----CCHHHHHHHHHhc-CCCEEECCccCCHHHHHHHHHcCCCE
Confidence            4444 45566666652  5799997765 555432     2334567777653 677654 4447788999999999999


Q ss_pred             EEEcccccC
Q 033625           85 IVAGSSVFG   93 (115)
Q Consensus        85 iv~Gsaif~   93 (115)
                      +.++.+...
T Consensus       146 VlLi~a~L~  154 (272)
T 3tsm_A          146 ILIIMASVD  154 (272)
T ss_dssp             EEEETTTSC
T ss_pred             EEEcccccC
Confidence            999987663

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=93.55  E-value=0.48  Score=37.83  Aligned_cols=78  Identities=15%  Similarity=0.246  Sum_probs=51.9

Q ss_pred             eEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|..+..... .+.++.+++  .++|.|-+-+   +. |.  ....++.++++++..+++|+.+-+=.+.+.+..+.++|
T Consensus       246 vga~vG~~~~~~~~a~~~~~--aG~d~v~i~~---~~-G~--~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG  317 (514)
T 1jcn_A          246 CGAAVGTREDDKYRLDLLTQ--AGVDVIVLDS---SQ-GN--SVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG  317 (514)
T ss_dssp             CEEEECSSTTHHHHHHHHHH--TTCSEEEECC---SC-CC--SHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT
T ss_pred             eeeEecCchhhHHHHHHHHH--cCCCEEEeec---cC-Cc--chhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC
Confidence            3455543333 455555552  5799886532   22 11  13455778888887777888764457899999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      ||.+++|
T Consensus       318 ad~I~vg  324 (514)
T 1jcn_A          318 VDGLRVG  324 (514)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9999994

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=93.50  E-value=0.11  Score=39.78  Aligned_cols=51  Identities=18%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             CCcEEEEcCCCh----hh---HHHHHH-cCCCEEEEcccccC--CCCHHHHHHHHHHHHHH
Q 033625           60 SLDIEVDGGLGP----ST---IAEAAS-AGANCIVAGSSVFG--APEPAHVISLMRKSVED  110 (115)
Q Consensus        60 ~~~i~~dGGI~~----~n---i~~l~~-~Gad~iv~Gsaif~--~~d~~~~~~~l~~~~~~  110 (115)
                      .+|+.+.||=+.    +.   +....+ .|+.++++|+.||+  .+||.+.++.+.++++.
T Consensus       237 ~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~iVH~  297 (307)
T 3fok_A          237 TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAARLVHT  297 (307)
T ss_dssp             SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHHHHHHHHHHHCC
T ss_pred             CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCCCCHHHHHHHHHHHHHh
Confidence            489999999773    23   344567 79999999999999  89999999999998763

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=93.49  E-value=0.91  Score=29.10  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      ...|.|++-..-|+..       .++-++++++..+++|+.+..+ -+.+......+.| ++.++     .+.-++.+-.
T Consensus        57 ~~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l-----~KP~~~~~l~  124 (153)
T 3hv2_A           57 REVDLVISAAHLPQMD-------GPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYL-----SKPWDDQELL  124 (153)
T ss_dssp             SCCSEEEEESCCSSSC-------HHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEE-----CSSCCHHHHH
T ss_pred             CCCCEEEEeCCCCcCc-------HHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEE-----eCCCCHHHHH
Confidence            4688888765556543       4556777777777888665544 5667778888999 88773     3444666666


Q ss_pred             HHHHHHHH
Q 033625          102 SLMRKSVE  109 (115)
Q Consensus       102 ~~l~~~~~  109 (115)
                      ..++..++
T Consensus       125 ~~i~~~l~  132 (153)
T 3hv2_A          125 LALRQALE  132 (153)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}

Probab=93.38  E-value=0.42  Score=29.99  Aligned_cols=73  Identities=7%  Similarity=0.031  Sum_probs=48.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ..+|.|++-.--|+..|..       -++++++..+++|+.+ .+--+.+......++|++.++.     +.-++.+-..
T Consensus        58 ~~~dlvi~D~~l~~~~g~~-------~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~L~~  125 (135)
T 3snk_A           58 TRPGIVILDLGGGDLLGKP-------GIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLH-----KPLDGKELLN  125 (135)
T ss_dssp             CCCSEEEEEEETTGGGGST-------THHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHH
T ss_pred             cCCCEEEEeCCCCCchHHH-------HHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhcc-----CCCCHHHHHH
Confidence            4688888776667755433       3566777666778665 4556677788889999998744     4446666555


Q ss_pred             HHHHHH
Q 033625          103 LMRKSV  108 (115)
Q Consensus       103 ~l~~~~  108 (115)
                      .++..+
T Consensus       126 ~i~~~~  131 (135)
T 3snk_A          126 AVTFHD  131 (135)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            555443

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=93.29  E-value=0.55  Score=36.23  Aligned_cols=82  Identities=11%  Similarity=0.080  Sum_probs=49.6

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchh-HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPE-MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~-~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +++.+.+....+..+.+. + .++|.+.+- ..+...+ .+.+. ..+.+.++++.. ++|+.+=|..+.+.+..+.++|
T Consensus       158 v~~~v~~~~~~e~a~~~~-~-agad~i~i~-~~~~~~~-~~~~~~~~~~i~~l~~~~-~~pvi~ggi~t~e~a~~~~~~G  232 (393)
T 2qr6_A          158 VAVRVSPQNVREIAPIVI-K-AGADLLVIQ-GTLISAE-HVNTGGEALNLKEFIGSL-DVPVIAGGVNDYTTALHMMRTG  232 (393)
T ss_dssp             CEEEECTTTHHHHHHHHH-H-TTCSEEEEE-CSSCCSS-CCCC-----CHHHHHHHC-SSCEEEECCCSHHHHHHHHTTT
T ss_pred             EEEEeCCccHHHHHHHHH-H-CCCCEEEEe-CCccccc-cCCCcccHHHHHHHHHhc-CCCEEECCcCCHHHHHHHHHcC
Confidence            344555544444444443 2 478987542 2221010 11111 344577777764 7999997778999999999999


Q ss_pred             CCEEEEcc
Q 033625           82 ANCIVAGS   89 (115)
Q Consensus        82 ad~iv~Gs   89 (115)
                      ||.+++|.
T Consensus       233 ad~i~vg~  240 (393)
T 2qr6_A          233 AVGIIVGG  240 (393)
T ss_dssp             CSEEEESC
T ss_pred             CCEEEECC
Confidence            99999976

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=93.08  E-value=0.89  Score=32.13  Aligned_cols=93  Identities=15%  Similarity=0.093  Sum_probs=57.3

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh--hhHHHHHHcCCCEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAGANCIV   86 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~--~ni~~l~~~Gad~iv   86 (115)
                      +.+..+.++.+.+  .++|++.+--..--|- +.. ...++.++++++.. +.++.++-=++.  +.++.+.++|+|++.
T Consensus        22 ~~~~~~~i~~~~~--~G~d~i~l~~~dg~f~-~~~-~~~~~~i~~l~~~~-~~~~~v~l~vnd~~~~v~~~~~~Gad~v~   96 (230)
T 1rpx_A           22 FSKLGEQVKAIEQ--AGCDWIHVDVMDGRFV-PNI-TIGPLVVDSLRPIT-DLPLDVHLMIVEPDQRVPDFIKAGADIVS   96 (230)
T ss_dssp             GGGHHHHHHHHHH--TTCCCEEEEEEBSSSS-SCB-CCCHHHHHHHGGGC-CSCEEEEEESSSHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHHHH--CCCCEEEEeeccCCcc-ccc-ccCHHHHHHHHhcc-CCcEEEEEEecCHHHHHHHHHHcCCCEEE
Confidence            3334455665552  4799998754222221 111 23456677887764 567777777775  468889999999998


Q ss_pred             EcccccCCCCHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~  106 (115)
                      +....+..+.+.+.++.+++
T Consensus        97 vh~~~~~~~~~~~~~~~~~~  116 (230)
T 1rpx_A           97 VHCEQSSTIHLHRTINQIKS  116 (230)
T ss_dssp             EECSTTTCSCHHHHHHHHHH
T ss_pred             EEecCccchhHHHHHHHHHH
Confidence            87652233566666666654

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=92.99  E-value=0.34  Score=45.21  Aligned_cols=69  Identities=13%  Similarity=0.211  Sum_probs=51.1

Q ss_pred             CCCCEEEEEeeeCCC-CCc----ccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH-----------HcCCCEEE
Q 033625           24 NPVEMVLVMTVEPGF-GGQ----KFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIV   86 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~-~gq----~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~-----------~~Gad~iv   86 (115)
                      .++|.|.+|-+..+- +|.    ++....+..+.++++.. ++|+.++|||. .+.+..++           .+|||.+-
T Consensus       715 aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~-~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~  793 (2060)
T 2uva_G          715 ANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCS-NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCM  793 (2060)
T ss_dssp             HCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTST-TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEE
T ss_pred             cCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEE
Confidence            478999866665322 222    12245677888888764 79999999996 66788888           99999999


Q ss_pred             EcccccC
Q 033625           87 AGSSVFG   93 (115)
Q Consensus        87 ~Gsaif~   93 (115)
                      +||....
T Consensus       794 ~GT~f~~  800 (2060)
T 2uva_G          794 FGSRMMT  800 (2060)
T ss_dssp             ESGGGGG
T ss_pred             Echhhhc
Confidence            9998654

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=92.92  E-value=1.1  Score=28.19  Aligned_cols=73  Identities=18%  Similarity=0.297  Sum_probs=49.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-. .|+.       ..++.++++++..+++|+.+.. .-+.+......+.|++.++     .+.-++.+-..
T Consensus        47 ~~~dlvi~d~-~~~~-------~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~  113 (142)
T 2qxy_A           47 EKIDLVFVDV-FEGE-------ESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYI-----LKPFRLDYLLE  113 (142)
T ss_dssp             SCCSEEEEEC-TTTH-------HHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSCEE-----ESSCCHHHHHH
T ss_pred             cCCCEEEEeC-CCCC-------cHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcceeE-----eCCCCHHHHHH
Confidence            4689888766 5542       3456677888777788876554 4566778888999998764     34446666666


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..+.
T Consensus       114 ~i~~~~~  120 (142)
T 2qxy_A          114 RVKKIIS  120 (142)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666554

>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A

Probab=92.90  E-value=0.14  Score=38.10  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             CCcEEEEcCCChhhHHHHHH-cCCCEEEEcccccCCCCHHHHHHH
Q 033625           60 SLDIEVDGGLGPSTIAEAAS-AGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        60 ~~~i~~dGGI~~~ni~~l~~-~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      +++|.-=|+++++|+.++.. .++|++-+|++.++++++.+-++.
T Consensus       204 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii~~  248 (255)
T 1tre_A          204 QVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKA  248 (255)
T ss_dssp             HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGCHHHHHHHHHH
T ss_pred             cccEEEcCCCCHHHHHHHHcCCCCCeeEecHHHhChHHHHHHHHH
Confidence            58899999999999999876 999999999999988777666554

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=92.86  E-value=0.99  Score=27.76  Aligned_cols=74  Identities=18%  Similarity=0.144  Sum_probs=48.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.+++-..-|+..|       ++-++++++..++.|+.+.. .-+.+......++|++.++.     +.-++.+-..
T Consensus        46 ~~~dlvi~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~-----Kp~~~~~l~~  113 (126)
T 1dbw_A           46 VRNGVLVTDLRMPDMSG-------VELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIE-----KPFEDTVIIE  113 (126)
T ss_dssp             CCSEEEEEECCSTTSCH-------HHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEEE-----SSCCHHHHHH
T ss_pred             CCCCEEEEECCCCCCCH-------HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHHhee-----CCCCHHHHHH
Confidence            35788776555566443       44566777766778876554 45667788889999987743     4446666655


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       114 ~i~~~~~  120 (126)
T 1dbw_A          114 AIERASE  120 (126)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            5655543

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=92.72  E-value=0.6  Score=33.51  Aligned_cols=56  Identities=20%  Similarity=0.415  Sum_probs=38.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|+|   -++.||....   ..++-++++++. ..++|+.+.|||+ .+.+..+.++|||.+
T Consensus       144 aGad~I---~tstg~~~gg---a~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~i  201 (225)
T 1mzh_A          144 AGADFI---KTSTGFAPRG---TTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI  201 (225)
T ss_dssp             HTCSEE---ECCCSCSSSC---CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             hCCCEE---EECCCCCCCC---CCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence            489999   3444652111   233445555554 3479999999997 788888889999964

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=92.70  E-value=0.96  Score=27.98  Aligned_cols=76  Identities=13%  Similarity=0.211  Sum_probs=48.1

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ...|.|++-.--|+..       .++-++++++.  .+++|+.+..+-..+......+.|++.++     .+.-++.+-.
T Consensus        46 ~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~  113 (133)
T 3nhm_A           46 HPPDVLISDVNMDGMD-------GYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYL-----VKPVKPPVLI  113 (133)
T ss_dssp             SCCSEEEECSSCSSSC-------HHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEE-----ESSCCHHHHH
T ss_pred             CCCCEEEEeCCCCCCC-------HHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEE-----eccCCHHHHH
Confidence            4689888755556533       45567777765  45788877776554444777889988763     3555777777


Q ss_pred             HHHHHHHHHH
Q 033625          102 SLMRKSVEDA  111 (115)
Q Consensus       102 ~~l~~~~~~~  111 (115)
                      ..++..++..
T Consensus       114 ~~i~~~l~~~  123 (133)
T 3nhm_A          114 AQLHALLARA  123 (133)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            7787777653

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1

Probab=92.57  E-value=0.073  Score=43.06  Aligned_cols=36  Identities=17%  Similarity=0.189  Sum_probs=30.4

Q ss_pred             CCCCcEEEEcCCChhhHHHHHHcCCCEEEEc--ccccC
Q 033625           58 YPSLDIEVDGGLGPSTIAEAASAGANCIVAG--SSVFG   93 (115)
Q Consensus        58 ~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G--saif~   93 (115)
                      ++++.|++.||||++++..+.+.|+++++.|  +.|..
T Consensus       284 ~~~~kI~aSggld~~~i~~l~~~G~~~~sfGvGT~Lt~  321 (494)
T 2f7f_A          284 FTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLIT  321 (494)
T ss_dssp             CTTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHT
T ss_pred             CCceEEEEECCCCHHHHHHHHHcCCCEEEEecCccccc
Confidence            3478899999999999999999999888777  45554

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=92.40  E-value=1.3  Score=28.16  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-.--|+..       .++.++++++..++.|+.+ .+.-+.+......++|++.++.     +.-++.+-..
T Consensus        65 ~~~dlii~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----Kp~~~~~l~~  132 (150)
T 4e7p_A           65 ESVDIAILDVEMPVKT-------GLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVL-----KERSIADLMQ  132 (150)
T ss_dssp             SCCSEEEECSSCSSSC-------HHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEE-----TTSCHHHHHH
T ss_pred             cCCCEEEEeCCCCCCc-------HHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEe-----cCCCHHHHHH
Confidence            4688887654445533       4566788888777888654 5556777888899999998744     4446666666


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       133 ~i~~~~~  139 (150)
T 4e7p_A          133 TLHTVLE  139 (150)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            6666654

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=92.37  E-value=0.29  Score=35.47  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=41.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC--EEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGAN--CIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad--~iv~Gsaif~   93 (115)
                      .++|+|=   +..||+...-.++..+.+++..  ..++++-+.|||+ .+..-.+.++||+  +...|..||+
T Consensus       145 aGADfVK---TsTGf~~~gat~~dv~~m~~~v--g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~  212 (220)
T 1ub3_A          145 GGADFLK---TSTGFGPRGASLEDVALLVRVA--QGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA  212 (220)
T ss_dssp             HTCSEEE---CCCSSSSCCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred             hCCCEEE---eCCCCCCCCCCHHHHHHHHHhh--CCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence            3789984   5556653322233434444332  4579999999998 4567778899999  5544455654

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=92.26  E-value=1.5  Score=28.24  Aligned_cols=75  Identities=9%  Similarity=0.162  Sum_probs=50.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ...|.|++-..-|+..       .++-++++++.  .+++|+.+ .+.-+.+......++|++.++     .+.-++.+-
T Consensus        50 ~~~dlii~D~~l~~~~-------g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l  117 (154)
T 3gt7_A           50 TRPDLIISDVLMPEMD-------GYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFI-----TKPCKDVVL  117 (154)
T ss_dssp             CCCSEEEEESCCSSSC-------HHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEE-----ESSCCHHHH
T ss_pred             CCCCEEEEeCCCCCCC-------HHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEE-----eCCCCHHHH
Confidence            4689888766667644       34556666665  25677655 555677888889999999874     344466666


Q ss_pred             HHHHHHHHHH
Q 033625          101 ISLMRKSVED  110 (115)
Q Consensus       101 ~~~l~~~~~~  110 (115)
                      ...++..++.
T Consensus       118 ~~~i~~~l~~  127 (154)
T 3gt7_A          118 ASHVKRLLSG  127 (154)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6667766654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=92.05  E-value=0.4  Score=38.39  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=53.9

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC-CcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS-LDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~-~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      ++..+.+....+.++.+.+  .++|.+.+- ...|.     .....+.++.+++..++ .++.+-+..+.+....+.++|
T Consensus       234 v~a~v~~~~~~e~~~~l~e--~gv~~l~Vd-~~~g~-----~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aG  305 (503)
T 1me8_A          234 VGAGINTRDFRERVPALVE--AGADVLCID-SSDGF-----SEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAG  305 (503)
T ss_dssp             CEEEECSSSHHHHHHHHHH--HTCSEEEEC-CSCCC-----SHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHT
T ss_pred             cccccCchhHHHHHHHHHh--hhccceEEe-cccCc-----ccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhC
Confidence            3455566444566666652  378876442 22232     23356667888777666 888888888999999999999


Q ss_pred             CCEEEEcc
Q 033625           82 ANCIVAGS   89 (115)
Q Consensus        82 ad~iv~Gs   89 (115)
                      +|++++|.
T Consensus       306 ad~I~Vg~  313 (503)
T 1me8_A          306 ADFIKIGI  313 (503)
T ss_dssp             CSEEEECS
T ss_pred             CCeEEecc
Confidence            99999873

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=91.86  E-value=1.2  Score=27.83  Aligned_cols=76  Identities=11%  Similarity=-0.007  Sum_probs=48.7

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..|.|++-.--|+.     ....++-++++++..+++|+.+ .+.-+.+......++|++.++.     +.-++.+-...
T Consensus        50 ~~dlvi~D~~l~~~-----~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~-----KP~~~~~l~~~  119 (136)
T 3kto_A           50 DAIGMIIEAHLEDK-----KDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIE-----KPFIEHVLVHD  119 (136)
T ss_dssp             TEEEEEEETTGGGB-----TTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSEEEE-----SSBCHHHHHHH
T ss_pred             CCCEEEEeCcCCCC-----CccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHHhee-----CCCCHHHHHHH
Confidence            46666554333430     0235667888888777888665 4555677788889999998743     44466666666


Q ss_pred             HHHHHHH
Q 033625          104 MRKSVED  110 (115)
Q Consensus       104 l~~~~~~  110 (115)
                      +++....
T Consensus       120 i~~~~~~  126 (136)
T 3kto_A          120 VQQIING  126 (136)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            6666654

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=91.80  E-value=1  Score=30.13  Aligned_cols=68  Identities=21%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      +..+.++. +.. ..+|.|++-..-|+.+|       ++-++++++..+++|+.+ .|--+.+......++||+.++.
T Consensus        39 ~~~~al~~-~~~-~~~dlvl~D~~lp~~~g-------~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~  107 (184)
T 3rqi_A           39 NKDEALKL-AGA-EKFEFITVXLHLGNDSG-------LSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLA  107 (184)
T ss_dssp             SHHHHHHH-HTT-SCCSEEEECSEETTEES-------HHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHH-Hhh-CCCCEEEEeccCCCccH-------HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHHhee
Confidence            33344444 322 46899887766677544       455677777777888665 5555677788899999998854

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=91.77  E-value=0.92  Score=41.23  Aligned_cols=88  Identities=18%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc------chhHHHHHHHHHhh------CCCCcEEEEcCCC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF------MPEMMDKVRSLRNR------YPSLDIEVDGGLG   70 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~------~~~~~~ki~~l~~~------~~~~~i~~dGGI~   70 (115)
                      +++-+.+..........+.+ .++|.|.+-....|..+...      ...+..-|.++++.      ..++||.++|||.
T Consensus       996 V~VKlv~~~gi~~~A~~a~~-AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIr 1074 (1479)
T 1ea0_A          996 VTVKLVSRSGIGTIAAGVAK-ANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLK 1074 (1479)
T ss_dssp             EEEEEECCTTHHHHHHHHHH-TTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCC
T ss_pred             EEEEEcCCCChHHHHHHHHH-cCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCC
Confidence            34555554443333333322 58999987555444322111      01123334444432      2479999999996


Q ss_pred             -hhhHHHHHHcCCCEEEEcccc
Q 033625           71 -PSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        71 -~~ni~~l~~~Gad~iv~Gsai   91 (115)
                       ...+...+.+|||.+-+|++.
T Consensus      1075 tG~DVakALaLGAdaV~iGTaf 1096 (1479)
T 1ea0_A         1075 TGRDIVIAAMLGAEEFGIGTAS 1096 (1479)
T ss_dssp             SHHHHHHHHHTTCSEEECCHHH
T ss_pred             CHHHHHHHHHcCCCeeeEcHHH
Confidence             677778889999999999875

>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A

Probab=91.60  E-value=3.6  Score=35.02  Aligned_cols=92  Identities=14%  Similarity=0.080  Sum_probs=54.8

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIV   86 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv   86 (115)
                      ....|.+.+.+...+ .++|.|.+-+...++.     ....+-++.|++....-...+.||+-+ +....+.+.|+|.+.
T Consensus       639 G~~v~~eeiv~aA~e-~~adiVglSsl~~~~~-----~~~~~vi~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f  712 (762)
T 2xij_A          639 PLFQTPREVAQQAVD-ADVHAVGVSTLAAGHK-----TLVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVF  712 (762)
T ss_dssp             CTTCCHHHHHHHHHH-TTCSEEEEEECSSCHH-----HHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEE
T ss_pred             CCCCCHHHHHHHHHH-cCCCEEEEeeecHHHH-----HHHHHHHHHHHhcCCCCCEEEEeCCCCcccHHHHHhCCCCEEe
Confidence            344555544443333 6899998765544322     223344566666654223566677444 458888999999874


Q ss_pred             EcccccCCCCHHHHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      .-     ..|..+.+..+++.++.
T Consensus       713 ~p-----gtd~~e~~~~i~~~l~~  731 (762)
T 2xij_A          713 GP-----GTRIPKAAVQVLDDIEK  731 (762)
T ss_dssp             CT-----TCCHHHHHHHHHHHHHH
T ss_pred             CC-----CCCHHHHHHHHHHHHHH
Confidence            31     23777777777776654

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=91.60  E-value=0.55  Score=36.47  Aligned_cols=80  Identities=10%  Similarity=0.078  Sum_probs=53.5

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC-----CCcccchhHHHHHHHHHhhCCCCcEEEEcC---CChhhHHHH
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-----GGQKFMPEMMDKVRSLRNRYPSLDIEVDGG---LGPSTIAEA   77 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~-----~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG---I~~~ni~~l   77 (115)
                      .|++.++.+.....++. -++|.+.+ .++|..     .|..-....++.|+++++.. ++|+.+-|=   .+++.+..+
T Consensus       150 nig~~~~~e~~~~~ve~-~~adal~i-hln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~~l  226 (365)
T 3sr7_A          150 NIGLDKPYQAGLQAVRD-LQPLFLQV-HINLMQELLMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQTA  226 (365)
T ss_dssp             EEETTSCHHHHHHHHHH-HCCSCEEE-EECHHHHHTSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHh-cCCCEEEE-eccccccccCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHHHH
Confidence            45677777765554422 36777653 444421     12121224457788888874 789988853   699999999


Q ss_pred             HHcCCCEEEEc
Q 033625           78 ASAGANCIVAG   88 (115)
Q Consensus        78 ~~~Gad~iv~G   88 (115)
                      .++|||.++++
T Consensus       227 ~~aGad~I~V~  237 (365)
T 3sr7_A          227 IDLGVKTVDIS  237 (365)
T ss_dssp             HHHTCCEEECC
T ss_pred             HHcCCCEEEEe
Confidence            99999999985

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=91.59  E-value=1.1  Score=35.41  Aligned_cols=78  Identities=15%  Similarity=0.257  Sum_probs=54.1

Q ss_pred             eEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|.++++... .+..+.+++  .++|.+.+-+.    .| . ....++.++++++..+++|+.+-|..+.+....+.++|
T Consensus       224 vg~~i~~~~~~~~~a~~l~~--~G~d~ivi~~a----~g-~-~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~G  295 (491)
T 1zfj_A          224 VAAAVGVTSDTFERAEALFE--AGADAIVIDTA----HG-H-SAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAG  295 (491)
T ss_dssp             CEEEECSSTTHHHHHHHHHH--HTCSEEEECCS----CT-T-CHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTT
T ss_pred             EEEeccCchhHHHHHHHHHH--cCCCeEEEeee----cC-c-chhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcC
Confidence            4555554322 355555552  48999876542    12 2 23567788888888778888866666888888999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      +|.+.+|
T Consensus       296 ad~I~vg  302 (491)
T 1zfj_A          296 VDVVKVG  302 (491)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9999987

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=91.48  E-value=1  Score=34.02  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=43.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|||=   ...||+...-..+..+.++++.+. ..+++|-+.|||+ .+....++++||+-+
T Consensus       200 aGADfVK---TSTGf~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~Ri  260 (288)
T 3oa3_A          200 AGADYVK---TSTGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERL  260 (288)
T ss_dssp             TTCSEEE---CCCSSSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             cCCCEEE---cCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence            5899995   557887444444455666666543 3579999999998 478888999999965

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=91.36  E-value=1.7  Score=27.09  Aligned_cols=73  Identities=11%  Similarity=0.106  Sum_probs=45.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEc-CCChhhHHHHHHcCCCEEEEcccccCCC-CHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAP-EPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~-d~~~~  100 (115)
                      ...|.|+    .|+..       .++.++++++. + ++|+.+.. .-+.+......+.|++.++.     +.- ++.+-
T Consensus        61 ~~~dlvi----~~~~~-------g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~~l  123 (137)
T 2pln_A           61 RNYDLVM----VSDKN-------ALSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIA-----KPYRSIKAL  123 (137)
T ss_dssp             SCCSEEE----ECSTT-------HHHHHHHHHHH-STTSEEEEEESSCCHHHHHHHHHTTCSEEEE-----SSCSCHHHH
T ss_pred             CCCCEEE----EcCcc-------HHHHHHHHHhc-CCCccEEEEeCCCCHHHHHHHHHcCCceeee-----CCCCCHHHH
Confidence            4578877    34433       44556777766 6 78866554 45677788889999998743     444 66666


Q ss_pred             HHHHHHHHHHHhh
Q 033625          101 ISLMRKSVEDAQK  113 (115)
Q Consensus       101 ~~~l~~~~~~~~~  113 (115)
                      ...++..+....+
T Consensus       124 ~~~i~~~~~~~~~  136 (137)
T 2pln_A          124 VARIEARLRFWGS  136 (137)
T ss_dssp             HHHHHHHTC----
T ss_pred             HHHHHHHHhhhcC
Confidence            6666666554433

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=91.36  E-value=1.7  Score=27.29  Aligned_cols=74  Identities=12%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEEEc-CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.|++-.--|+..       .++-++++++  ..+++|+.+.. .-+.+......+.|++.++.     +.-++.+-.
T Consensus        52 ~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~L~  119 (147)
T 2zay_A           52 HPHLIITEANMPKIS-------GMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIA-----KPVNAIRLS  119 (147)
T ss_dssp             CCSEEEEESCCSSSC-------HHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEE-----SSCCHHHHH
T ss_pred             CCCEEEEcCCCCCCC-------HHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEe-----CCCCHHHHH
Confidence            588888765555533       4556777777  45678866554 45677778888999998743     444666666


Q ss_pred             HHHHHHHHH
Q 033625          102 SLMRKSVED  110 (115)
Q Consensus       102 ~~l~~~~~~  110 (115)
                      ..++..++.
T Consensus       120 ~~i~~~~~~  128 (147)
T 2zay_A          120 ARIKRVLKL  128 (147)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665553

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=91.30  E-value=0.27  Score=47.46  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=34.9

Q ss_pred             HHHHhhCCCCcEEEEcCC-ChhhHHHHH-----------HcCCCEEEEcccccCC
Q 033625           52 RSLRNRYPSLDIEVDGGL-GPSTIAEAA-----------SAGANCIVAGSSVFGA   94 (115)
Q Consensus        52 ~~l~~~~~~~~i~~dGGI-~~~ni~~l~-----------~~Gad~iv~Gsaif~~   94 (115)
                      .++++. .++|+.+.||| +.+.+....           ..|||.+++||++...
T Consensus       599 ~~ir~~-~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t  652 (3089)
T 3zen_D          599 SELRSR-SNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMAT  652 (3089)
T ss_dssp             HHHTTC-TTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred             HHHhhc-CCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhC
Confidence            666554 47999999998 678888888           9999999999997654

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=91.23  E-value=1.9  Score=27.43  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=49.9

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+..       .++-++++++..++.|+.+. +.-+.+......++|++.++.     +.-++.+-..
T Consensus        60 ~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----Kp~~~~~l~~  127 (152)
T 3eul_A           60 HLPDVALLDYRMPGMD-------GAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLL-----KDSTRTEIVK  127 (152)
T ss_dssp             HCCSEEEEETTCSSSC-------HHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEE-----TTCCHHHHHH
T ss_pred             cCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEe-----cCCCHHHHHH
Confidence            3688887655556533       45667788877778886654 455667777889999998744     4446666666


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..+.
T Consensus       128 ~i~~~~~  134 (152)
T 3eul_A          128 AVLDCAK  134 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            6665554

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=91.20  E-value=0.12  Score=40.91  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=45.9

Q ss_pred             CCEEEEEeeeCCCCCcccchhH--HHHHHHHHhhCCCCcEEEEcCCChhh-HHHHHH----cCCCEEEEcccccCCCCHH
Q 033625           26 VEMVLVMTVEPGFGGQKFMPEM--MDKVRSLRNRYPSLDIEVDGGLGPST-IAEAAS----AGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        26 vD~vlvm~v~pG~~gq~~~~~~--~~ki~~l~~~~~~~~i~~dGGI~~~n-i~~l~~----~Gad~iv~Gsaif~~~d~~   98 (115)
                      +|||-+..  +.+.++...+..  ...++.+++.. +.|+.+.||++.+. ..++++    .++|.+.+|++.+..+|..
T Consensus       280 l~ylhv~~--~~~~~~~~~~~~~~~~~~~~ir~~~-~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~  356 (407)
T 3tjl_A          280 IAYISVVE--PRVSGNVDVSEEDQAGDNEFVSKIW-KGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLV  356 (407)
T ss_dssp             CSEEEEEC--TTEETTEECCGGGCCCCSHHHHHHC-CSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHH
T ss_pred             eeEEEEEc--cccCCCCcCCccchhHHHHHHHHHh-CCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHH
Confidence            99998652  333222111100  01234445544 57999999999765 444433    5699999999998889876


Q ss_pred             HHHH
Q 033625           99 HVIS  102 (115)
Q Consensus        99 ~~~~  102 (115)
                      +.++
T Consensus       357 ~ri~  360 (407)
T 3tjl_A          357 WKLR  360 (407)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=91.07  E-value=0.5  Score=35.73  Aligned_cols=78  Identities=12%  Similarity=0.034  Sum_probs=50.0

Q ss_pred             EEEecCCCCHHhHHHhHhCCCCCCEEEEEe---eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH
Q 033625            4 GVALKPGTSVEEVYPLVEGANPVEMVLVMT---VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS   79 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~---v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~   79 (115)
                      |+.....++ +..+.|-+  .++|-|.++.   .+.-|.+.......++-|+++++.. ++|+.+.+++. .+.++.+.+
T Consensus        23 gv~~d~~~~-e~A~~ye~--~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~a   98 (297)
T 4adt_A           23 GVIMDVKNV-EQAKIAEK--AGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI-SINVLAKVRIGHFVEAQILEE   98 (297)
T ss_dssp             CEEEEESSH-HHHHHHHH--HTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHH
T ss_pred             CcccCCCcH-HHHHHHHH--cCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHH
Confidence            444444444 54555542  5899998885   2233333222234567788888775 79999987776 777888899


Q ss_pred             cCCCEE
Q 033625           80 AGANCI   85 (115)
Q Consensus        80 ~Gad~i   85 (115)
                      +|||.+
T Consensus        99 aGAD~I  104 (297)
T 4adt_A           99 LKVDML  104 (297)
T ss_dssp             TTCSEE
T ss_pred             cCCCEE
Confidence            999998

>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}

Probab=91.02  E-value=1.5  Score=30.73  Aligned_cols=86  Identities=19%  Similarity=0.171  Sum_probs=54.0

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      -|.++.|.+.+...+.. ..+|.|.+-+..+.     ..+...+-++++++..  +++++.+=|..-.+.+  ..+.|+|
T Consensus       121 ~LG~~vp~~~l~~~~~~-~~~d~v~lS~~~~~-----~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~~~~--~~~~gad  192 (210)
T 1y80_A          121 NLGVDIEPGKFVEAVKK-YQPDIVGMSALLTT-----TMMNMKSTIDALIAAGLRDRVKVIVGGAPLSQDF--ADEIGAD  192 (210)
T ss_dssp             ECCSSBCHHHHHHHHHH-HCCSEEEEECCSGG-----GTHHHHHHHHHHHHTTCGGGCEEEEESTTCCHHH--HHHHTCS
T ss_pred             ECCCCCCHHHHHHHHHH-cCCCEEEEeccccc-----cHHHHHHHHHHHHhcCCCCCCeEEEECCCCCHHH--HHHcCCe
Confidence            36678889888777743 47999987554432     2344555567777654  4588777665443322  3567888


Q ss_pred             EEEEcccccCCCCHHHHHHHHHHH
Q 033625           84 CIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        84 ~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      .+        .+|..++++..++.
T Consensus       193 ~~--------~~da~~av~~~~~l  208 (210)
T 1y80_A          193 GY--------APDAASATELCRQL  208 (210)
T ss_dssp             EE--------CSSHHHHHHHHHHH
T ss_pred             EE--------ECCHHHHHHHHHHH
Confidence            65        46766666655543

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.99  E-value=1.9  Score=27.08  Aligned_cols=73  Identities=5%  Similarity=0.035  Sum_probs=47.6

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..|.|++-..-|+..       .++.++++++..++.|+.+..+ -+.+......++|++.++.     +.-++.+-...
T Consensus        48 ~~dlvllD~~l~~~~-------g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~-----KP~~~~~L~~~  115 (137)
T 3cfy_A           48 KPQLIILDLKLPDMS-------GEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLE-----KPINADRLKTS  115 (137)
T ss_dssp             CCSEEEECSBCSSSB-------HHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHHH
T ss_pred             CCCEEEEecCCCCCC-------HHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccEEEe-----CCCCHHHHHHH
Confidence            578887665556644       3455677777667777665554 4567778888999997744     44455555555


Q ss_pred             HHHHHH
Q 033625          104 MRKSVE  109 (115)
Q Consensus       104 l~~~~~  109 (115)
                      ++..++
T Consensus       116 i~~~~~  121 (137)
T 3cfy_A          116 VALHLK  121 (137)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=90.94  E-value=1.7  Score=28.05  Aligned_cols=71  Identities=8%  Similarity=0.078  Sum_probs=47.0

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..|.|++-.--|+..       .++.++++++..++.++.+. +--+.+....+.++|++.++.     +.-++.+-...
T Consensus        83 ~~dliilD~~l~~~~-------g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~l~~~  150 (157)
T 3hzh_A           83 NIDIVTLXITMPKMD-------GITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIV-----KPLDRAKVLQR  150 (157)
T ss_dssp             GCCEEEECSSCSSSC-------HHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHHH
T ss_pred             CCCEEEEeccCCCcc-------HHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEe-----CCCCHHHHHHH
Confidence            578887655445533       45667788877778886654 456778888899999998743     44455555555


Q ss_pred             HHHH
Q 033625          104 MRKS  107 (115)
Q Consensus       104 l~~~  107 (115)
                      ++..
T Consensus       151 i~~~  154 (157)
T 3hzh_A          151 VMSV  154 (157)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            5443

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=90.90  E-value=0.87  Score=36.15  Aligned_cols=67  Identities=27%  Similarity=0.379  Sum_probs=42.8

Q ss_pred             CCCEEEEEeeeCCCC-------Ccc-cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           25 PVEMVLVMTVEPGFG-------GQK-FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~-------gq~-~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      ++|.|.+ ++-||..       |.. .....+..+.++.+.. ++|+.+||||. ...+...+.+|||.+-+|+.+..
T Consensus       287 G~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~  362 (486)
T 2cu0_A          287 FADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG  362 (486)
T ss_dssp             TSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             CCCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence            7888877 4444431       110 0123344444444433 68999999986 45666677899999999998764

>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A

Probab=90.85  E-value=2  Score=27.05  Aligned_cols=89  Identities=11%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.+..+.......|.|++-..-|+       ...++-++++++..+++|+.+..+ -+.+......++|++.+   
T Consensus        52 ~~~~~~~~~~~~~~~~~dlvi~D~~l~~-------~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~---  121 (146)
T 4dad_A           52 VGRAAQIVQRTDGLDAFDILMIDGAALD-------TAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDV---  121 (146)
T ss_dssp             CCCHHHHTTCHHHHTTCSEEEEECTTCC-------HHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEE---
T ss_pred             CCHHHHHHHHHhcCCCCCEEEEeCCCCC-------ccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCcee---
Confidence            3444444444310034787776544454       245667788888778888665544 56777888889998876   


Q ss_pred             ccccCCCCHHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~~  110 (115)
                        |.+.-++.+-...++..++.
T Consensus       122 --l~Kp~~~~~L~~~i~~~~~~  141 (146)
T 4dad_A          122 --LRWPLEPRALDDALKRAAAQ  141 (146)
T ss_dssp             --EESSCCHHHHHHHHHHHHHT
T ss_pred             --EcCCCCHHHHHHHHHHHHhh
Confidence              44545676666667666654

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=90.84  E-value=2  Score=27.10  Aligned_cols=74  Identities=18%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+..|       ++-++++++..++.|+.+..+ -+.+......+.|++.+     |.+.-++.+-..
T Consensus        48 ~~~dlvllD~~lp~~~g-------~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~-----l~KP~~~~~L~~  115 (141)
T 3cu5_A           48 HPPNVLLTDVRMPRMDG-------IELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRY-----VEKPIDPSEIMD  115 (141)
T ss_dssp             SCCSEEEEESCCSSSCH-------HHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEE-----ECSSCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCH-------HHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEE-----EeCCCCHHHHHH
Confidence            35898887655666443       455667777677888776655 44566777788998876     344446666555


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..+.
T Consensus       116 ~i~~~~~  122 (141)
T 3cu5_A          116 ALKQSIQ  122 (141)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5655544

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=90.78  E-value=0.79  Score=28.20  Aligned_cols=74  Identities=11%  Similarity=0.037  Sum_probs=45.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ...|.|++-.--|+.+       .++-++++++.  .+++|+.+..+ -+.+. ......|++.+     |.+.-++.+-
T Consensus        46 ~~~dlii~D~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~-----l~KP~~~~~L  112 (127)
T 3i42_A           46 RGYDAVFIDLNLPDTS-------GLALVKQLRALPMEKTSKFVAVSGFAKNDL-GKEACELFDFY-----LEKPIDIASL  112 (127)
T ss_dssp             SCCSEEEEESBCSSSB-------HHHHHHHHHHSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEE-----EESSCCHHHH
T ss_pred             cCCCEEEEeCCCCCCC-------HHHHHHHHHhhhccCCCCEEEEECCcchhH-HHHHHHhhHHh-----eeCCCCHHHH
Confidence            4689888766666643       45567777776  56788766554 44444 66778888875     4444466666


Q ss_pred             HHHHHHHHHH
Q 033625          101 ISLMRKSVED  110 (115)
Q Consensus       101 ~~~l~~~~~~  110 (115)
                      .+.++.....
T Consensus       113 ~~~i~~~~~~  122 (127)
T 3i42_A          113 EPILQSIEGH  122 (127)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHhhcc
Confidence            6556554443

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=90.66  E-value=2  Score=26.69  Aligned_cols=74  Identities=11%  Similarity=0.182  Sum_probs=48.9

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+..       .++.++++++..++.|+.+..+ -+.+......++||+.++.     +.-++.+-..
T Consensus        46 ~~~dlvl~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~-----KP~~~~~L~~  113 (132)
T 3crn_A           46 EFFNLALFXIKLPDME-------GTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIM-----KPVNPRDLLE  113 (132)
T ss_dssp             SCCSEEEECSBCSSSB-------HHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHH
T ss_pred             CCCCEEEEecCCCCCc-------hHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhhcc-----CCCCHHHHHH
Confidence            4678887755556644       3455667777667788766555 4567778888999998854     4446666666


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       114 ~i~~~~~  120 (132)
T 3crn_A          114 KIKEKLD  120 (132)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6665544

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=90.66  E-value=2.6  Score=31.82  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=48.6

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--C--CcccchhHHHHHHHHHhhCCCCcEEEE---cCCChhhHHHHHH
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--G--GQKFMPEMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAAS   79 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~--gq~~~~~~~~ki~~l~~~~~~~~i~~d---GGI~~~ni~~l~~   79 (115)
                      ++.+...+.+...++. .++|+|-+-.-.|-.  .  +.......++.++++++.. ++|+.+-   .|++.+.+..+.+
T Consensus       123 i~~~~~~~~~~~~~~~-~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~-~~Pv~vK~~~~~~~~~~a~~a~~  200 (349)
T 1p0k_A          123 LGSEATAAQAKEAVEM-IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYE  200 (349)
T ss_dssp             EETTCCHHHHHHHHHH-TTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHh-cCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHH
Confidence            4433444545554433 458887543332211  1  1111112566788888764 6888874   4489999999999


Q ss_pred             cCCCEEEEc
Q 033625           80 AGANCIVAG   88 (115)
Q Consensus        80 ~Gad~iv~G   88 (115)
                      +|+|.+++.
T Consensus       201 ~Gad~I~v~  209 (349)
T 1p0k_A          201 AGAAAVDIG  209 (349)
T ss_dssp             HTCSEEEEE
T ss_pred             cCCCEEEEc
Confidence            999999985

>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}

Probab=90.65  E-value=1.2  Score=32.47  Aligned_cols=72  Identities=14%  Similarity=0.073  Sum_probs=45.8

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      -|.+++|.+.+...+.. ..+|.|.+-+..+..     .+...+-++++++..+++++.+=|..-.+.+.  .+.|+|.+
T Consensus       156 ~LG~~vp~e~l~~~~~~-~~~d~V~lS~l~~~~-----~~~~~~~i~~l~~~~~~~~v~vGG~~~~~~~~--~~igad~~  227 (258)
T 2i2x_B          156 DLGRDVPAEEVLAAVQK-EKPIMLTGTALMTTT-----MYAFKEVNDMLLENGIKIPFACGGGAVNQDFV--SQFALGVY  227 (258)
T ss_dssp             EEEEECCSHHHHHHHHH-HCCSEEEEECCCTTT-----TTHHHHHHHHHHTTTCCCCEEEESTTCCHHHH--HTSTTEEE
T ss_pred             ECCCCCCHHHHHHHHHH-cCCCEEEEEeeccCC-----HHHHHHHHHHHHhcCCCCcEEEECccCCHHHH--HHcCCeEE
Confidence            35566788777666533 478999876554431     23455557788877777888887765444333  36788766

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=90.61  E-value=2  Score=26.66  Aligned_cols=75  Identities=9%  Similarity=0.107  Sum_probs=51.1

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-.--|+..       .++-++++++..++.|+.+..+ -+.+......++|++.+     +.+.-++.+-..
T Consensus        50 ~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~-----l~kP~~~~~l~~  117 (137)
T 3hdg_A           50 HAPDVIITDIRMPKLG-------GLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLF-----LPKPIEPGRLME  117 (137)
T ss_dssp             HCCSEEEECSSCSSSC-------HHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEE-----CCSSCCHHHHHH
T ss_pred             cCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCccee-----EcCCCCHHHHHH
Confidence            3578887654445533       4566778888778888776655 45667778899999976     445457776666


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       118 ~i~~~~~~  125 (137)
T 3hdg_A          118 TLEDFRHI  125 (137)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            67666654

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=90.58  E-value=2.5  Score=28.85  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCC--CcEEEEcCCChhhHHHHHHcCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS--LDIEVDGGLGPSTIAEAASAGA   82 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~--~~i~~dGGI~~~ni~~l~~~Ga   82 (115)
                      ++....++.+.++.+.+  ..+|.+++-..-|+.+|       ++.++++++..+.  +|+.+.++ ..+......+.|+
T Consensus         7 ~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g-------~~~~~~l~~~~~~~~i~vi~~~~-~~~~~~~~~~~Ga   76 (237)
T 3cwo_X            7 IVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNG-------IDAIKEIMKIDPNAKIIVCSAMG-QQAMVIEAIKAGA   76 (237)
T ss_dssp             EEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSH-------HHHHHHHHHHSSSCCEEEECCSS-THHHHHHHHHTTC
T ss_pred             EEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH-------HHHHHHHHHhCCCCCEEEEECCC-CHHHHHHHHHCCH
Confidence            34445555555555441  35797776555576444       4456666655443  55554444 4888899999999


Q ss_pred             CEEEEcccccCCCC
Q 033625           83 NCIVAGSSVFGAPE   96 (115)
Q Consensus        83 d~iv~Gsaif~~~d   96 (115)
                      +.++....-|..+.
T Consensus        77 ~~~l~kp~~~~~~~   90 (237)
T 3cwo_X           77 KDFIVNTAAVENPS   90 (237)
T ss_dssp             CEEEESHHHHHCTH
T ss_pred             HheEeCCcccChHH
Confidence            99988765444333

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=90.56  E-value=1.8  Score=26.10  Aligned_cols=75  Identities=21%  Similarity=0.117  Sum_probs=48.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.+++-..-|+..       .++.++++++..++.|+.+. +.-+.+......++|++.++.     +.-++.+-..
T Consensus        43 ~~~dlil~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~  110 (121)
T 2pl1_A           43 HIPDIAIVDLGLPDED-------GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT-----KPFHIEEVMA  110 (121)
T ss_dssp             SCCSEEEECSCCSSSC-------HHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHH
T ss_pred             cCCCEEEEecCCCCCC-------HHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccceEE-----CCCCHHHHHH
Confidence            4578887654455533       34557777776667786655 445667778888999998754     4446666666


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       111 ~i~~~~~~  118 (121)
T 2pl1_A          111 RMQALMRR  118 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66655543

>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}

Probab=90.51  E-value=0.87  Score=32.51  Aligned_cols=85  Identities=18%  Similarity=0.097  Sum_probs=52.2

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEcCCChhhHHHHHHcC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      -|.+++|.+.+...+.. ..+|.|.+  -+....     -.+...+-++++++...  ++++.+=|..-.+.+  ..+.|
T Consensus       125 ~LG~~vp~e~iv~~~~~-~~~d~v~l~~S~l~~~-----~~~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~--a~~iG  196 (215)
T 3ezx_A          125 DLGVDVLNENVVEEAAK-HKGEKVLLVGSALMTT-----SMLGQKDLMDRLNEEKLRDSVKCMFGGAPVSDKW--IEEIG  196 (215)
T ss_dssp             ECCSSCCHHHHHHHHHH-TTTSCEEEEEECSSHH-----HHTHHHHHHHHHHHTTCGGGSEEEEESSSCCHHH--HHHHT
T ss_pred             EcCCCCCHHHHHHHHHH-cCCCEEEEEchhcccC-----cHHHHHHHHHHHHHcCCCCCCEEEEECCCCCHHH--HHHhC
Confidence            46788999888666644 68999986  332221     12334455677777654  688888777443332  23458


Q ss_pred             CCEEEEcccccCCCCHHHHHHHHHH
Q 033625           82 ANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        82 ad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      ||..        ++|..++++..++
T Consensus       197 ad~~--------~~dA~~av~~a~~  213 (215)
T 3ezx_A          197 ADAT--------AENAAEAAKVALE  213 (215)
T ss_dssp             CCBC--------CSSHHHHHHHHHH
T ss_pred             CeEE--------ECCHHHHHHHHHH
Confidence            8755        5677766665543

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=90.37  E-value=2.2  Score=26.69  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+..       .++-++++++..+++|+.+ .+.-+.+......++|++.++.     +.-++.+-..
T Consensus        48 ~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~  115 (143)
T 3jte_A           48 NSIDVVITDMKMPKLS-------GMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLR-----KPVTAQDLSI  115 (143)
T ss_dssp             TTCCEEEEESCCSSSC-------HHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEE-----SSCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCc-------HHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEe-----CCCCHHHHHH
Confidence            4689888765556533       4556777777777788665 4455667788899999998744     3345555555


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       116 ~l~~~~~  122 (143)
T 3jte_A          116 AINNAIN  122 (143)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5655544

>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1

Probab=90.33  E-value=0.16  Score=37.90  Aligned_cols=42  Identities=17%  Similarity=0.273  Sum_probs=36.6

Q ss_pred             CCcEEEEcCCChhhHHHHH-HcCCCEEEEcccccCCC--CHHHHH
Q 033625           60 SLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAP--EPAHVI  101 (115)
Q Consensus        60 ~~~i~~dGGI~~~ni~~l~-~~Gad~iv~Gsaif~~~--d~~~~~  101 (115)
                      +++|.-=|+++++|+.++. +.++|++-+|++..+++  ++.+-+
T Consensus       206 ~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASLka~~~~F~~ii  250 (255)
T 1b9b_A          206 SIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELARIM  250 (255)
T ss_dssp             HSEEEEESSCCHHHHTTTSSSTTCCEEEESGGGTSTHHHHHHHHH
T ss_pred             cceEEEcCcCCHHHHHHHHcCCCCCeeEeehHhhcCccccHHHHH
Confidence            4889999999999999986 89999999999999877  665544

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=90.22  E-value=0.34  Score=34.50  Aligned_cols=55  Identities=22%  Similarity=0.361  Sum_probs=39.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc-ccC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS-VFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa-if~   93 (115)
                      .+.|++-+|   ||    ...|..   ++++    .+.|+.+-|+|+ +|.+.. +++|||.++.+.- +|.
T Consensus       127 ~kPD~iEiL---Pg----~v~p~~---I~~v----~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~  183 (188)
T 1vkf_A          127 LGVDVVEVL---PG----AVAPKV---ARKI----PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK  183 (188)
T ss_dssp             HTCSEEEEE---SG----GGHHHH---HTTS----TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred             cCCCeEeec---CC----CchHHH---HHHh----cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence            468998888   55    112333   3333    478999999996 678888 9999999999943 775

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=90.03  E-value=1.3  Score=33.85  Aligned_cols=73  Identities=23%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             HhHHHhHhCCCCCCEEEEEe--eeCCCCCcccchhHHHH----HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEE
Q 033625           14 EEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMPEMMDK----VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~~~~~~k----i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      +..+.+++  .++|+|=|.+  ..|| ..-. .++-+++    |+.+++..+++||++|=- +++.++..+++|+|+|--
T Consensus        69 ~~A~~~v~--~GAdIIDIGgeSTrPG-~~v~-~~eEl~Rv~pvI~~l~~~~~~vpISIDT~-~~~VaeaAl~aGa~iIND  143 (318)
T 2vp8_A           69 DAVHRAVA--DGADVIDVGGVKAGPG-ERVD-VDTEITRLVPFIEWLRGAYPDQLISVDTW-RAQVAKAACAAGADLIND  143 (318)
T ss_dssp             HHHHHHHH--TTCSEEEEC-----------C-HHHHHHHHHHHHHHHHHHSTTCEEEEECS-CHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHH--CCCCEEEECCCcCCCC-CCCC-HHHHHHHHHHHHHHHHhhCCCCeEEEeCC-CHHHHHHHHHhCCCEEEE
Confidence            34444552  6899998774  4577 3322 1233333    566666656899999976 899999999999998877


Q ss_pred             cccc
Q 033625           88 GSSV   91 (115)
Q Consensus        88 Gsai   91 (115)
                      .|+.
T Consensus       144 Vsg~  147 (318)
T 2vp8_A          144 TWGG  147 (318)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            7765

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=90.02  E-value=2.5  Score=26.86  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=47.4

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .+|.|++-.--|+..       .++-++++++..++.|+.+ .+.-+.+......+.| ++.++.     +.-++.+-..
T Consensus        48 ~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~-----KP~~~~~L~~  115 (151)
T 3kcn_A           48 PFSVIMVDMRMPGME-------GTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLN-----KPCQMSDIKA  115 (151)
T ss_dssp             CCSEEEEESCCSSSC-------HHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCSEEEE-----SSCCHHHHHH
T ss_pred             CCCEEEEeCCCCCCc-------HHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCeeEEEc-----CCCCHHHHHH
Confidence            369888766566644       4556777777777888665 4555667777888899 887743     4345555555


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       116 ~i~~~l~  122 (151)
T 3kcn_A          116 AINAGIK  122 (151)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=89.89  E-value=2.6  Score=30.75  Aligned_cols=65  Identities=11%  Similarity=0.211  Sum_probs=42.5

Q ss_pred             CCCCEEEEEee--eCCCCCcccc-------------hhHHHHHHHHHhhCCCCcEEEEcCCC-------hhhHHHHHHcC
Q 033625           24 NPVEMVLVMTV--EPGFGGQKFM-------------PEMMDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAG   81 (115)
Q Consensus        24 ~~vD~vlvm~v--~pG~~gq~~~-------------~~~~~ki~~l~~~~~~~~i~~dGGI~-------~~ni~~l~~~G   81 (115)
                      .++|.|-+..-  .|-.+|....             ...++-++++|+..|++|+.+.|=.|       .+-++.+.++|
T Consensus        43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG  122 (262)
T 2ekc_A           43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKG  122 (262)
T ss_dssp             TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTT
T ss_pred             cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcC
Confidence            47999987431  2222332221             23456688888876689998876555       34457789999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      +|++++.
T Consensus       123 ~dgvii~  129 (262)
T 2ekc_A          123 IDGFIVP  129 (262)
T ss_dssp             CCEEECT
T ss_pred             CCEEEEC
Confidence            9988775

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=89.75  E-value=2.3  Score=26.08  Aligned_cols=57  Identities=14%  Similarity=0.192  Sum_probs=36.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      ...|.|++-..-|+..       .++-++++++..++.|+. +.+.-+.+......+.|++.++.
T Consensus        50 ~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~  107 (130)
T 3eod_A           50 FTPDLMICDIAMPRMN-------GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLL  107 (130)
T ss_dssp             CCCSEEEECCC------------CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCCSEEEE
T ss_pred             CCCCEEEEecCCCCCC-------HHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEEe
Confidence            4688887655556543       345567777777777765 45556677778889999998743

>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*

Probab=89.64  E-value=0.44  Score=34.94  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=41.4

Q ss_pred             CCCCCCEEEEEeee--CCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           22 GANPVEMVLVMTVE--PGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        22 ~~~~vD~vlvm~v~--pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      ..+.+...++|+..  |-.+........++++.++++.    .+.++ .+..|.+.+ .+...+.|.|.+=+|++||...
T Consensus       170 ~~~~L~l~Glmth~~~~~ad~~~~~~~~f~~~~~~~~~l~~~~~~~~-~lS~Gms~d-~~~ai~~g~t~VR~G~~lfG~~  247 (256)
T 1ct5_A          170 ECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL-KLSMGMSAD-FREAIRQGTAEVRIGTDIFGAR  247 (256)
T ss_dssp             TCCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCCCC-EEECCCTTT-HHHHHHTTCSEEEESHHHHC--
T ss_pred             cCCCeeEEEEEEECCcCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC-EEEecccHh-HHHHHHcCCCEEEecHHHhCCC
Confidence            44788999999887  4322222233455555544322    12233 447777654 4555678999999999999865


Q ss_pred             CH
Q 033625           96 EP   97 (115)
Q Consensus        96 d~   97 (115)
                      ++
T Consensus       248 ~~  249 (256)
T 1ct5_A          248 PP  249 (256)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=89.60  E-value=1.6  Score=39.81  Aligned_cols=87  Identities=18%  Similarity=0.164  Sum_probs=51.2

Q ss_pred             EEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCccc------chhHHHHHHHHHhh------CCCCcEEEEcCCC-
Q 033625            4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF------MPEMMDKVRSLRNR------YPSLDIEVDGGLG-   70 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~------~~~~~~ki~~l~~~------~~~~~i~~dGGI~-   70 (115)
                      ++-+.+..........+.+ .++|.|.+-....|.++...      ...+..-|.++++.      ..++|+.++|||. 
T Consensus      1032 ~VKlv~~~gi~~~A~~a~k-AGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrt 1110 (1520)
T 1ofd_A         1032 SVKLVAEIGIGTIAAGVAK-ANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKT 1110 (1520)
T ss_dssp             EEEEECSTTHHHHHHHHHH-TTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCS
T ss_pred             EEEecCCCChHHHHHHHHH-cCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCC
Confidence            4444444333333333322 58999987554444322211      01122334444331      2369999999996 


Q ss_pred             hhhHHHHHHcCCCEEEEcccc
Q 033625           71 PSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        71 ~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      ...+...+..|||.+-+|++.
T Consensus      1111 G~DVakALaLGAdaV~iGTaf 1131 (1520)
T 1ofd_A         1111 GWDVVMAALMGAEEYGFGSIA 1131 (1520)
T ss_dssp             HHHHHHHHHTTCSEEECSHHH
T ss_pred             HHHHHHHHHcCCCeeEEcHHH
Confidence            677778889999999999874

>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1

Probab=89.54  E-value=0.68  Score=34.78  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             EEEeeeC----CCCCcccchhHHHHHH-HHHh----hC-----CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCC
Q 033625           30 LVMTVEP----GFGGQKFMPEMMDKVR-SLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGA   94 (115)
Q Consensus        30 lvm~v~p----G~~gq~~~~~~~~ki~-~l~~----~~-----~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~   94 (115)
                      ++++-+|    | +|..-.++..+.+. .+|+    .+     .+++|.-=|+++++|+.++ .+.++|++-+|++..++
T Consensus       179 vvIAYEPvWAIG-TGktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgASLka  257 (275)
T 1mo0_A          179 IVIAYEPVWAIG-TGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKP  257 (275)
T ss_dssp             EEEEECCGGGTT-TSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESGGGGST
T ss_pred             EEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCCCHhhHHHHhcCCCCCeeEechHHhCh
Confidence            3456777    4 45555544444433 3332    22     2488999999999999987 67899999999999988


Q ss_pred             CCHHHHHH
Q 033625           95 PEPAHVIS  102 (115)
Q Consensus        95 ~d~~~~~~  102 (115)
                      +++.+-++
T Consensus       258 ~~F~~Ii~  265 (275)
T 1mo0_A          258 DFVKIINA  265 (275)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77765544

>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}

Probab=89.51  E-value=0.79  Score=33.57  Aligned_cols=70  Identities=17%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHH
Q 033625           23 ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        23 ~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~   98 (115)
                      .+.+...++|+..|-.....   ..+.+++++++.. ++ -.+.+|.|.+- ....+.|++.+=+|++||...++.
T Consensus       156 l~~L~l~GlmTh~a~~dd~~---~~f~~l~~l~~~l-~~-~~lSmGmS~d~-~~Ai~~G~t~vRvGtaIfg~r~~~  225 (244)
T 3r79_A          156 ELKLPVEGLMCIPPAEENPG---PHFALLAKLAGQC-GL-EKLSMGMSGDF-ETAVEFGATSVRVGSAIFGSRAEN  225 (244)
T ss_dssp             TSCCCCCEEECCCCTTSCSH---HHHHHHHHHHHHH-TC-CEEECCCTTTH-HHHHHTTCSEEEECHHHHCCHHHH
T ss_pred             CCCCEEEEEEecCCCCCCHH---HHHHHHHHHHHhC-CC-CEEEeecchhH-HHHHHcCCCEEEeeHHHhCCCchh
Confidence            47899999998655332221   5667777777653 23 36788876654 445689999999999999865443

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=89.49  E-value=0.65  Score=35.21  Aligned_cols=56  Identities=18%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             CCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCChhhHHHHHHcCCCEEEEc
Q 033625           26 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        26 vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +|++.+   +... |  ......+.++++++..+..++. .| ..+.+....+.++|||.++++
T Consensus       121 ~~~i~i---~~~~-G--~~~~~~~~i~~lr~~~~~~~vi-~G~v~s~e~A~~a~~aGad~Ivvs  177 (336)
T 1ypf_A          121 PEYITI---DIAH-G--HSNAVINMIQHIKKHLPESFVI-AGNVGTPEAVRELENAGADATKVG  177 (336)
T ss_dssp             CSEEEE---ECSS-C--CSHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEE---ECCC-C--CcHHHHHHHHHHHHhCCCCEEE-ECCcCCHHHHHHHHHcCCCEEEEe
Confidence            888754   3332 2  3345677888888886555444 56 678999999999999999994

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=89.42  E-value=2.8  Score=26.64  Aligned_cols=72  Identities=17%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-.--|+..       .++-++++++..+++|+.+..+ -+.+......+.|++.++.-     .-++.+-..
T Consensus        46 ~~~dliild~~l~~~~-------g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~k-----P~~~~~L~~  113 (155)
T 1qkk_A           46 DFAGIVISDIRMPGMD-------GLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAK-----PFAADRLVQ  113 (155)
T ss_dssp             TCCSEEEEESCCSSSC-------HHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEES-----SCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCC-------HHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCeEEeC-----CCCHHHHHH
Confidence            3578887655555533       4455777777777888776655 45567778889999987543     334444444


Q ss_pred             HHHHH
Q 033625          103 LMRKS  107 (115)
Q Consensus       103 ~l~~~  107 (115)
                      .++..
T Consensus       114 ~i~~~  118 (155)
T 1qkk_A          114 SARRA  118 (155)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*

Probab=89.28  E-value=0.57  Score=34.76  Aligned_cols=70  Identities=17%  Similarity=0.280  Sum_probs=46.7

Q ss_pred             EEeeeCCC---CCcccchhHHHHHH-HHHh----hC-----CCCcEEEEcCCChhhHHHHH-HcCCCEEEEcccccCCCC
Q 033625           31 VMTVEPGF---GGQKFMPEMMDKVR-SLRN----RY-----PSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        31 vm~v~pG~---~gq~~~~~~~~ki~-~l~~----~~-----~~~~i~~dGGI~~~ni~~l~-~~Gad~iv~Gsaif~~~d   96 (115)
                      +++-+|-.   +|....++..+.+. .+|+    .+     .+++|.-=|+++++|+.++. +.++|++-+|++-.+.++
T Consensus       166 vIAYEPvWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~~~~  245 (254)
T 3m9y_A          166 VIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVED  245 (254)
T ss_dssp             EEEECCGGGCC--CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCCCTTTHHHHHTSTTCCEEEESGGGSSHHH
T ss_pred             EEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHHcCCCCCeEEeeHHhhCHHH
Confidence            34667722   55555555444422 2232    22     36899999999999999987 899999999999887655


Q ss_pred             HHHH
Q 033625           97 PAHV  100 (115)
Q Consensus        97 ~~~~  100 (115)
                      ..+-
T Consensus       246 F~~I  249 (254)
T 3m9y_A          246 FVQL  249 (254)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*

Probab=89.28  E-value=5.4  Score=33.74  Aligned_cols=91  Identities=15%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcC-CChhhHHHHHHcCCCEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGG-LGPSTIAEAASAGANCI   85 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGG-I~~~ni~~l~~~Gad~i   85 (115)
                      ....|.+.+.+...+ .++|.|.+-+...++.     +...+-++.|++... ++ ..+.|| +-.+....+.+.|+|.+
T Consensus       631 G~~v~~eeiv~aA~e-~~adiVglSsl~~~~~-----~~~~~vi~~L~~~G~~~i-~VivGG~~p~~d~~~l~~~GaD~~  703 (727)
T 1req_A          631 PLFQTPEETARQAVE-ADVHVVGVSSLAGGHL-----TLVPALRKELDKLGRPDI-LITVGGVIPEQDFDELRKDGAVEI  703 (727)
T ss_dssp             CTTBCHHHHHHHHHH-TTCSEEEEEECSSCHH-----HHHHHHHHHHHHTTCTTS-EEEEEESCCGGGHHHHHHTTEEEE
T ss_pred             CCCCCHHHHHHHHHH-cCCCEEEEeeecHhHH-----HHHHHHHHHHHhcCCCCC-EEEEcCCCccccHHHHHhCCCCEE
Confidence            344555544444433 6899998765544322     233344566666654 44 455666 55556788899999987


Q ss_pred             EEcccccCCCCHHHHHHHHHHHHHH
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      ..     ...+..+.++.+.+.++.
T Consensus       704 f~-----~gt~~~e~a~~l~~~l~~  723 (727)
T 1req_A          704 YT-----PGTVIPESAISLVKKLRA  723 (727)
T ss_dssp             EC-----TTCCHHHHHHHHHHHHHH
T ss_pred             Ec-----CCccHHHHHHHHHHHHHH
Confidence            43     235777888888777754

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=89.20  E-value=2.1  Score=26.67  Aligned_cols=73  Identities=11%  Similarity=0.154  Sum_probs=46.5

Q ss_pred             CCCEEEEEeeeC-CCCCcccchhHHHHHHHHHh--hCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           25 PVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRN--RYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        25 ~vD~vlvm~v~p-G~~gq~~~~~~~~ki~~l~~--~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ..|.|++-.--| +       ...++-++++++  ..+++|+.+. +--+.+......++|++.++.     +.-++.+-
T Consensus        50 ~~dlvi~D~~l~~~-------~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~l  117 (140)
T 3lua_A           50 SITLIIMDIAFPVE-------KEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYIL-----KPYPTKRL  117 (140)
T ss_dssp             CCSEEEECSCSSSH-------HHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEE-----SSCCTTHH
T ss_pred             CCcEEEEeCCCCCC-------CcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE-----CCCCHHHH
Confidence            478887644444 3       245666788887  5677886655 445678888899999998754     33344444


Q ss_pred             HHHHHHHHH
Q 033625          101 ISLMRKSVE  109 (115)
Q Consensus       101 ~~~l~~~~~  109 (115)
                      ...++..++
T Consensus       118 ~~~i~~~~~  126 (140)
T 3lua_A          118 ENSVRSVLK  126 (140)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            444555443

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=89.04  E-value=4.9  Score=30.26  Aligned_cols=66  Identities=18%  Similarity=0.256  Sum_probs=43.5

Q ss_pred             CCCCEEEEE--eeeCCCCCcccchhH---HHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccc
Q 033625           24 NPVEMVLVM--TVEPGFGGQKFMPEM---MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        24 ~~vD~vlvm--~v~pG~~gq~~~~~~---~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      .++|+|=|.  +..||.....-.++.   ..-|+.+++.. ++||.+|.- +++.++..+++|++++--.|+.
T Consensus        75 ~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT~-~~~V~~aAl~aGa~iINdvsg~  145 (297)
T 1tx2_A           75 EGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDTY-KAEVAKQAIEAGAHIINDIWGA  145 (297)
T ss_dssp             TTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEECS-CHHHHHHHHHHTCCEEEETTTT
T ss_pred             cCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeCC-CHHHHHHHHHcCCCEEEECCCC
Confidence            689999888  466886544433222   22235555443 799999986 8999999999999999777664

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=89.00  E-value=2.6  Score=25.62  Aligned_cols=72  Identities=14%  Similarity=0.180  Sum_probs=46.6

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..|.+++-..-|+..|       ++-++++++..++.|+.+..+ -+.+......+.|++.++     .+.-++.+-...
T Consensus        47 ~~dlvl~D~~l~~~~g-------~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~  114 (124)
T 1srr_A           47 RPDLVLLDMKIPGMDG-------IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHF-----AKPFDIDEIRDA  114 (124)
T ss_dssp             CCSEEEEESCCTTCCH-------HHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCEE-----ESSCCHHHHHHH
T ss_pred             CCCEEEEecCCCCCCH-------HHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhhc-----cCCCCHHHHHHH
Confidence            5788887655666443       445667776667888766554 456677788899998764     344466555555


Q ss_pred             HHHHH
Q 033625          104 MRKSV  108 (115)
Q Consensus       104 l~~~~  108 (115)
                      ++..+
T Consensus       115 i~~~~  119 (124)
T 1srr_A          115 VKKYL  119 (124)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            55443

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=88.96  E-value=2.9  Score=26.10  Aligned_cols=75  Identities=12%  Similarity=0.037  Sum_probs=47.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ...|.|++-.--|+..       .++-++++++..+..++.+..+- .+......+.|++.++.     +.-++.+-...
T Consensus        54 ~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~g~~~~l~-----KP~~~~~l~~~  120 (143)
T 2qv0_A           54 NKVDAIFLDINIPSLD-------GVLLAQNISQFAHKPFIVFITAW-KEHAVEAFELEAFDYIL-----KPYQESRIINM  120 (143)
T ss_dssp             CCCSEEEECSSCSSSC-------HHHHHHHHTTSTTCCEEEEEESC-CTTHHHHHHTTCSEEEE-----SSCCHHHHHHH
T ss_pred             CCCCEEEEecCCCCCC-------HHHHHHHHHccCCCceEEEEeCC-HHHHHHHHhCCcceEEe-----CCCCHHHHHHH
Confidence            4578887654445432       45567777776666777766665 45677788999987743     43456665566


Q ss_pred             HHHHHHHH
Q 033625          104 MRKSVEDA  111 (115)
Q Consensus       104 l~~~~~~~  111 (115)
                      ++..+..+
T Consensus       121 i~~~~~~~  128 (143)
T 2qv0_A          121 LQKLTTAW  128 (143)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655543

>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A

Probab=88.86  E-value=4.7  Score=28.49  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.++.+- . ..+|.|++-..-|+.+|       ++-++++++..+++||.+ .+.-+.+....+.++|++.++  
T Consensus       160 ~~~~eal~~l~-~-~~~dlvl~D~~mp~~~G-------~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l--  228 (254)
T 2ayx_A          160 NDGVDALNVLS-K-NHIDIVLSDVNMPNMDG-------YRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCL--  228 (254)
T ss_dssp             CCSHHHHHHHH-H-SCCSEEEEEESSCSSCC-------HHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEE--
T ss_pred             CCHHHHHHHHH-h-CCCCEEEEcCCCCCCCH-------HHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEE--
Confidence            34455555443 2 45898887766677554       344566666556778665 455567788889999998774  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~~  110 (115)
                         .+.-++.+-...++..+..
T Consensus       229 ---~KP~~~~~L~~~l~~~~~~  247 (254)
T 2ayx_A          229 ---SKPVTLDVIKQTLTLYAER  247 (254)
T ss_dssp             ---ESSCCHHHHHHHHHHHHHH
T ss_pred             ---ECCCCHHHHHHHHHHHHHH
Confidence               3444555555555555543

>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}

Probab=88.75  E-value=0.41  Score=35.68  Aligned_cols=72  Identities=19%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             EEeeeC----CCCCcccchhHHHHHH-HHHh----hC-----CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625           31 VMTVEP----GFGGQKFMPEMMDKVR-SLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        31 vm~v~p----G~~gq~~~~~~~~ki~-~l~~----~~-----~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~   95 (115)
                      +++-+|    | +|..-.++..+.+. .+|+    .+     .+++|.-=|+++++|+.++ .+.++|++-+|++.++++
T Consensus       160 vIAYEPvWAIG-TG~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a~  238 (259)
T 2i9e_A          160 VIAYEPVWAIG-TGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPDIDGFLVGGASLKPE  238 (259)
T ss_dssp             EEEECCGGGTT-SSSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGSTH
T ss_pred             EEEEcCHHHcC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHhhHHHHhcCCCCCeeeechHhhChH
Confidence            556777    4 45555544444332 3332    11     2488999999999999986 568999999999999888


Q ss_pred             CHHHHHHH
Q 033625           96 EPAHVISL  103 (115)
Q Consensus        96 d~~~~~~~  103 (115)
                      ++.+-++.
T Consensus       239 ~F~~Ii~~  246 (259)
T 2i9e_A          239 FVDIINAR  246 (259)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHHH
Confidence            77665543

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=88.67  E-value=2.2  Score=26.28  Aligned_cols=74  Identities=20%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-.--|+..       .++-++++++..++.|+.+ .+.-+.+......+.|++.++.=.     -++.+-..
T Consensus        45 ~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp-----~~~~~l~~  112 (134)
T 3f6c_A           45 LKPDIVIIDVDIPGVN-------GIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKK-----EGMNNIIA  112 (134)
T ss_dssp             HCCSEEEEETTCSSSC-------HHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGG-----GCTHHHHH
T ss_pred             cCCCEEEEecCCCCCC-------hHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCC-----CCHHHHHH
Confidence            3578887655556533       4566778887777887665 455666778888999999875532     24444444


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       113 ~i~~~~~  119 (134)
T 3f6c_A          113 AIEAAKN  119 (134)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            4554443

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=88.63  E-value=2.9  Score=25.80  Aligned_cols=73  Identities=14%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .+|.|++-.--|+..       .++-++++++. .++.|+.+ .+.-+.+......++|++.++.     +.-++.+-..
T Consensus        52 ~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~l~~  119 (136)
T 3hdv_A           52 RIGLMITDLRMQPES-------GLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLL-----KPVDLGKLLE  119 (136)
T ss_dssp             TEEEEEECSCCSSSC-------HHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEE-----SSCCHHHHHH
T ss_pred             CCcEEEEeccCCCCC-------HHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEe-----CCCCHHHHHH
Confidence            378777655556543       45667778776 57777665 5556677888899999998744     4446666666


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .+++...
T Consensus       120 ~i~~~~~  126 (136)
T 3hdv_A          120 LVNKELK  126 (136)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            6665554

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=88.59  E-value=2.5  Score=25.43  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=45.8

Q ss_pred             CCCEEEEEeeeC-CCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~p-G~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.+++-.--| +..       .++-++++++.  .++.|+.+.+.-+.+......+.|++.++.     +.-++.+-.
T Consensus        49 ~~dlvi~d~~~~~~~~-------g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~  116 (127)
T 2gkg_A           49 RPDLVVLAVDLSAGQN-------GYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRKLKAHADEYVA-----KPVDADQLV  116 (127)
T ss_dssp             CCSEEEEESBCGGGCB-------HHHHHHHHHHSTTTTTSCEEEEECGGGHHHHHHSTTCCSEEEE-----SSCCHHHHH
T ss_pred             CCCEEEEeCCCCCCCC-------HHHHHHHHhcCccccCCCEEEEecCCchhHHHHHHhCcchhee-----CCCCHHHHH
Confidence            578887655445 322       45567777766  567887766666677778888999987743     434555555


Q ss_pred             HHHHHH
Q 033625          102 SLMRKS  107 (115)
Q Consensus       102 ~~l~~~  107 (115)
                      ..++..
T Consensus       117 ~~i~~~  122 (127)
T 2gkg_A          117 ERAGAL  122 (127)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=88.53  E-value=3.1  Score=25.91  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=47.5

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ..|.|++-..-|+.+|       ++-++++++. .++.|+.+ .+.-+.+......++||+.++.     +.-++.+-..
T Consensus        52 ~~dlvllD~~mp~~~G-------~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~-----KP~~~~~L~~  119 (133)
T 2r25_B           52 NYNMIFMDVQMPKVDG-------LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLS-----KPIKRPKLKT  119 (133)
T ss_dssp             CCSEEEECSCCSSSCH-------HHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEE-----SSCCHHHHHH
T ss_pred             CCCEEEEeCCCCCCCh-------HHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHH
Confidence            4788887666677554       4556677653 44667665 4555677788889999998743     4445665555


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .+++.+..
T Consensus       120 ~l~~~~~~  127 (133)
T 2r25_B          120 ILTEFCAA  127 (133)
T ss_dssp             HHHHHCTT
T ss_pred             HHHHHHHh
Confidence            55555443

>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A

Probab=88.48  E-value=2.1  Score=33.07  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=49.6

Q ss_pred             cCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCCh
Q 033625            8 KPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLGP   71 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~~   71 (115)
                      +|...-|.+.+..-| ..++|+|+   |.||..       -++-|+++++..|++|+.+               -|=++.
T Consensus       238 dpaN~~EAlre~~~Di~EGAD~vM---VKPal~-------YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD~  307 (342)
T 1h7n_A          238 PPAGRGLARRALERDMSEGADGII---VKPSTF-------YLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDL  307 (342)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSEEE---EESSGG-------GHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSSCH
T ss_pred             CCCCHHHHHHHHHhhHHhCCCeEE---EecCcc-------HHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHcCCccH
Confidence            455555666554433 26899997   788732       3667888888888899875               345554


Q ss_pred             -----hhHHHHHHcCCCEEEEc
Q 033625           72 -----STIAEAASAGANCIVAG   88 (115)
Q Consensus        72 -----~ni~~l~~~Gad~iv~G   88 (115)
                           |.+-.++.+|||+|+.=
T Consensus       308 ~~~v~Esl~~~kRAGAd~IiTY  329 (342)
T 1h7n_A          308 KTIAFESHQGFLRAGARLIITY  329 (342)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHHHHHHhcCCCEEEee
Confidence                 56667899999999754

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*

Probab=88.47  E-value=0.81  Score=33.89  Aligned_cols=71  Identities=28%  Similarity=0.450  Sum_probs=49.7

Q ss_pred             EEEeeeC----CCCCcccchhHHHHHH-HHHh----hC-----CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCC
Q 033625           30 LVMTVEP----GFGGQKFMPEMMDKVR-SLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGA   94 (115)
Q Consensus        30 lvm~v~p----G~~gq~~~~~~~~ki~-~l~~----~~-----~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~   94 (115)
                      +++.-+|    | +|..-.++..+.+. .+|+    .+     .+++|.-=|+++++|+.++ .+.++|++-+|++.++ 
T Consensus       163 ~vIAYEPvWAIG-TG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-  240 (251)
T 2vxn_A          163 VVLAYEPVWAIG-TGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK-  240 (251)
T ss_dssp             EEEEECCGGGSS-SSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEESGGGGS-
T ss_pred             EEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHhcCCCCCeeeecHHHHH-
Confidence            4457777    4 45555544444433 2332    22     2488999999999999986 6789999999999998 


Q ss_pred             CCHHHHHH
Q 033625           95 PEPAHVIS  102 (115)
Q Consensus        95 ~d~~~~~~  102 (115)
                      +++.+-++
T Consensus       241 ~~F~~Ii~  248 (251)
T 2vxn_A          241 PEFRDIID  248 (251)
T ss_dssp             TTHHHHHH
T ss_pred             HHHHHHHH
Confidence            88866543

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=88.41  E-value=0.47  Score=34.73  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=40.7

Q ss_pred             CCCCEEEEEeeeCCCCC-cccchhHHHHHHH--HHhhCCCCcEEEEcCCC-hhhHHHHHHcCCC--EEEEccccc
Q 033625           24 NPVEMVLVMTVEPGFGG-QKFMPEMMDKVRS--LRNRYPSLDIEVDGGLG-PSTIAEAASAGAN--CIVAGSSVF   92 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~g-q~~~~~~~~ki~~--l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad--~iv~Gsaif   92 (115)
                      .++|||=   +..||.+ ..   .+.+-++.  +++... +++-+.|||+ .+..-.+.++|++  +...|..||
T Consensus       160 aGADfVK---TsTG~~~~~g---At~~dv~l~~m~~~v~-v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~I~  227 (234)
T 1n7k_A          160 AGADIVK---TSTGVYTKGG---DPVTVFRLASLAKPLG-MGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVL  227 (234)
T ss_dssp             TTCSEEE---SCCSSSCCCC---SHHHHHHHHHHHGGGT-CEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred             hCCCEEE---eCCCCCCCCC---CCHHHHHHHHHHHHHC-CCEEEecCCCCHHHHHHHHHcCccccchHHHHHHH
Confidence            5889995   5556653 22   23333444  665544 9999999999 6677778899999  443334444

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=88.29  E-value=0.85  Score=31.54  Aligned_cols=78  Identities=15%  Similarity=0.099  Sum_probs=46.2

Q ss_pred             CceEEEecCCCCHHhH---HHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC--hhh-H
Q 033625            1 MRPGVALKPGTSVEEV---YPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG--PST-I   74 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~---~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~--~~n-i   74 (115)
                      |+.=++++..+.-+.+   +.+.   ..+|++=+     |..-  +.+...+-++++++..+++|+.+|=++.  +++ +
T Consensus         1 ~~li~a~d~~~~~~~~~~~~~~~---~~v~~iev-----~~~~--~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~   70 (207)
T 3ajx_A            1 MKLQVAIDLLSTEAALELAGKVA---EYVDIIEL-----GTPL--IKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEA   70 (207)
T ss_dssp             CEEEEEECCSCHHHHHHHHHHHG---GGCSEEEE-----CHHH--HHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHH
T ss_pred             CeEEEEeCCCCHHHHHHHHHHhh---ccCCEEEE-----CcHH--HHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHH
Confidence            4555677754444333   3333   45677544     3211  2344455677777776677877754433  345 7


Q ss_pred             HHHHHcCCCEEEEc
Q 033625           75 AEAASAGANCIVAG   88 (115)
Q Consensus        75 ~~l~~~Gad~iv~G   88 (115)
                      +.+.++|||++.+-
T Consensus        71 ~~a~~~Gad~v~vh   84 (207)
T 3ajx_A           71 DIAFKAGADLVTVL   84 (207)
T ss_dssp             HHHHHTTCSEEEEE
T ss_pred             HHHHhCCCCEEEEe
Confidence            78899999999753

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=88.23  E-value=1.7  Score=27.11  Aligned_cols=76  Identities=14%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEEEcCCCh-hhHH-HHHHcCCCEEEEcccccCCCCHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEVDGGLGP-STIA-EAASAGANCIVAGSSVFGAPEPAH   99 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~i~~dGGI~~-~ni~-~l~~~Gad~iv~Gsaif~~~d~~~   99 (115)
                      ...|.|++-.--|+..       .++-++++++  ..+++|+.+..+-.. +... ...+.|++.++     .+.-++.+
T Consensus        49 ~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~  116 (140)
T 3grc_A           49 RPYAAMTVDLNLPDQD-------GVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWL-----EKPIDENL  116 (140)
T ss_dssp             SCCSEEEECSCCSSSC-------HHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEE-----CSSCCHHH
T ss_pred             CCCCEEEEeCCCCCCC-------HHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEE-----eCCCCHHH
Confidence            4688887655556543       4556777776  456888887766443 3344 56778988773     34447777


Q ss_pred             HHHHHHHHHHHH
Q 033625          100 VISLMRKSVEDA  111 (115)
Q Consensus       100 ~~~~l~~~~~~~  111 (115)
                      -...++..+++.
T Consensus       117 l~~~i~~~l~~~  128 (140)
T 3grc_A          117 LILSLHRAIDNM  128 (140)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            777777777653

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=88.17  E-value=5  Score=27.95  Aligned_cols=75  Identities=13%  Similarity=0.088  Sum_probs=52.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+.+       .++-++++++..++.|+.+. +.-+.+......++||+.++.     +.-++.+-..
T Consensus        66 ~~~dlvllD~~lp~~~-------g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~-----Kp~~~~~L~~  133 (250)
T 3r0j_A           66 TRPDAVILDVXMPGMD-------GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVT-----KPFSLEEVVA  133 (250)
T ss_dssp             HCCSEEEEESCCSSSC-------HHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEE-----SSCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHH
Confidence            3689888766667644       45667888877777886655 445567777889999998743     5557777777


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       134 ~i~~~~~~  141 (250)
T 3r0j_A          134 RLRVILRR  141 (250)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776654

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=88.11  E-value=2.6  Score=26.43  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=50.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeC-CCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~p-G~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +..+.++.+... ...|.|++-..-| |.+       .++-++++++. +++|+.+ .+.-+.+......++|++.++  
T Consensus        37 ~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~-------g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l--  105 (140)
T 3h5i_A           37 TGEAAVEKVSGG-WYPDLILMDIELGEGMD-------GVQTALAIQQI-SELPVVFLTAHTEPAVVEKIRSVTAYGYV--  105 (140)
T ss_dssp             SHHHHHHHHHTT-CCCSEEEEESSCSSSCC-------HHHHHHHHHHH-CCCCEEEEESSSSCCCCGGGGGSCEEEEE--
T ss_pred             ChHHHHHHHhcC-CCCCEEEEeccCCCCCC-------HHHHHHHHHhC-CCCCEEEEECCCCHHHHHHHHhCCCcEEE--
Confidence            334455544411 3579887655555 333       34456666665 6777655 455556677778889988764  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~~  110 (115)
                         .+.-++.+-...++..++.
T Consensus       106 ---~KP~~~~~l~~~i~~~l~~  124 (140)
T 3h5i_A          106 ---MKSATEQVLITIVEMALRL  124 (140)
T ss_dssp             ---ETTCCHHHHHHHHHHHHHH
T ss_pred             ---eCCCCHHHHHHHHHHHHHH
Confidence               3444666555556655543

>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A

Probab=87.79  E-value=2  Score=33.09  Aligned_cols=72  Identities=25%  Similarity=0.476  Sum_probs=50.4

Q ss_pred             ecCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCC
Q 033625            7 LKPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLG   70 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~   70 (115)
                      ++|...-|.+.+..-| ..++|+|+   |.||..       -++-|+++++..|++|+.+               -|=++
T Consensus       226 mdpaN~~EAlre~~~Di~EGAD~vM---VKPal~-------YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD  295 (330)
T 1pv8_A          226 LPPGARGLALRAVDRDVREGADMLM---VKPGMP-------YLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFD  295 (330)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCSBEE---EESCGG-------GHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred             CCCCCHHHHHHHHHhhHHhCCceEE---EecCcc-------HHHHHHHHHHhcCCCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence            3455666666655544 26899997   788832       3667888888888899875               34555


Q ss_pred             h-----hhHHHHHHcCCCEEEEc
Q 033625           71 P-----STIAEAASAGANCIVAG   88 (115)
Q Consensus        71 ~-----~ni~~l~~~Gad~iv~G   88 (115)
                      .     |.+-.++.+|||+|+.=
T Consensus       296 ~~~~v~Esl~~~kRAGAd~IiTY  318 (330)
T 1pv8_A          296 LKAAVLEAMTAFRRAGADIIITY  318 (330)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEET
T ss_pred             HHHHHHHHHHHHHhcCCCEEeee
Confidence            4     56667899999999753

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A

Probab=87.64  E-value=4.8  Score=27.13  Aligned_cols=73  Identities=18%  Similarity=0.242  Sum_probs=49.1

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..|.|++-..-|+.+       .++-++++++..++.|+.+. +.-+.+......++||+.++.     +.-++.+-...
T Consensus        51 ~~dlvllD~~lp~~~-------g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~-----Kp~~~~~L~~~  118 (215)
T 1a04_A           51 DPDLILLDLNMPGMN-------GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLL-----KDMEPEDLLKA  118 (215)
T ss_dssp             CCSEEEEETTSTTSC-------HHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEE-----TTCCHHHHHHH
T ss_pred             CCCEEEEeCCCCCCc-------HHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEe-----CCCCHHHHHHH
Confidence            578888765556644       45567778877777776655 555677888889999998754     44456555555


Q ss_pred             HHHHHH
Q 033625          104 MRKSVE  109 (115)
Q Consensus       104 l~~~~~  109 (115)
                      ++..+.
T Consensus       119 i~~~~~  124 (215)
T 1a04_A          119 LHQAAA  124 (215)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            555443

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=87.55  E-value=5.5  Score=27.94  Aligned_cols=77  Identities=9%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-E------EcCC----ChhhHHHHHHcCC
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-V------DGGL----GPSTIAEAASAGA   82 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~------dGGI----~~~ni~~l~~~Ga   82 (115)
                      +..+.+.+  .+++++.+.              ..+.++++++.. ++|+. +      ++++    +.+.+..+.++||
T Consensus        40 ~~a~~~~~--~G~~~i~~~--------------~~~~i~~i~~~~-~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Ga  102 (234)
T 1yxy_A           40 LMAKAAQE--AGAVGIRAN--------------SVRDIKEIQAIT-DLPIIGIIKKDYPPQEPFITATMTEVDQLAALNI  102 (234)
T ss_dssp             HHHHHHHH--HTCSEEEEE--------------SHHHHHHHHTTC-CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTC
T ss_pred             HHHHHHHH--CCCcEeecC--------------CHHHHHHHHHhC-CCCEEeeEcCCCCccccccCChHHHHHHHHHcCC
Confidence            34444441  478887642              123466776653 67763 1      2333    4578999999999


Q ss_pred             CEEEEcccccCCC---CHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFGAP---EPAHVISLMRKS  107 (115)
Q Consensus        83 d~iv~Gsaif~~~---d~~~~~~~l~~~  107 (115)
                      |.+.++......+   ...+.++.+++.
T Consensus       103 d~V~l~~~~~~~~~~~~~~~~i~~i~~~  130 (234)
T 1yxy_A          103 AVIAMDCTKRDRHDGLDIASFIRQVKEK  130 (234)
T ss_dssp             SEEEEECCSSCCTTCCCHHHHHHHHHHH
T ss_pred             CEEEEcccccCCCCCccHHHHHHHHHHh
Confidence            9999987765433   456666666654

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=87.50  E-value=3.4  Score=25.27  Aligned_cols=73  Identities=15%  Similarity=0.267  Sum_probs=48.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ...|.|++-..-|+.+|       ++-++++++.  .+++|+.+ .+.-+.+......++|++.++     .+.-++.+-
T Consensus        45 ~~~dlvllD~~~p~~~g-------~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l-----~KP~~~~~L  112 (122)
T 3gl9_A           45 FTPDLIVLXIMMPVMDG-------FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVM-----RKPFSPSQF  112 (122)
T ss_dssp             BCCSEEEECSCCSSSCH-------HHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEE-----ESSCCHHHH
T ss_pred             cCCCEEEEeccCCCCcH-------HHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhc-----cCCCCHHHH
Confidence            46898887666676544       4556677654  35677654 555667778888999999874     344566666


Q ss_pred             HHHHHHHH
Q 033625          101 ISLMRKSV  108 (115)
Q Consensus       101 ~~~l~~~~  108 (115)
                      ...+++.+
T Consensus       113 ~~~i~~~l  120 (122)
T 3gl9_A          113 IEEVKHLL  120 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666554

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=87.18  E-value=1.5  Score=27.39  Aligned_cols=77  Identities=12%  Similarity=0.058  Sum_probs=48.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ...|.|++-.-.|+..       .++.++++++  ..+++|+.+..+ -+.+......++|++.++.     +.-++.+-
T Consensus        50 ~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l  117 (142)
T 3cg4_A           50 GFSGVVLLDIMMPGMD-------GWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYIT-----KPFDNEDL  117 (142)
T ss_dssp             CCCEEEEEESCCSSSC-------HHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEE-----SSCCHHHH
T ss_pred             cCCCEEEEeCCCCCCC-------HHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEe-----CCCCHHHH
Confidence            3578887655555533       4556777777  556777666554 4556666777889887643     44466666


Q ss_pred             HHHHHHHHHHHh
Q 033625          101 ISLMRKSVEDAQ  112 (115)
Q Consensus       101 ~~~l~~~~~~~~  112 (115)
                      ...++..++..+
T Consensus       118 ~~~i~~~~~~~~  129 (142)
T 3cg4_A          118 IEKTTFFMGFVR  129 (142)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            666666665443

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=87.18  E-value=4.1  Score=25.77  Aligned_cols=73  Identities=12%  Similarity=0.135  Sum_probs=47.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ...|.|++-.--|+..       .++-++++++  ..+++|+. +.+.-+.+......+.|++.++.     +.-++.+-
T Consensus        58 ~~~dliilD~~l~~~~-------g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~l  125 (152)
T 3heb_A           58 GRAQLVLLDLNLPDMT-------GIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYIT-----KPVNYENF  125 (152)
T ss_dssp             TCBEEEEECSBCSSSB-------HHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHH
T ss_pred             CCCCEEEEeCCCCCCc-------HHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEe-----CCCCHHHH
Confidence            4688887655556643       4556777777  45677755 45556677788899999998743     43455555


Q ss_pred             HHHHHHHH
Q 033625          101 ISLMRKSV  108 (115)
Q Consensus       101 ~~~l~~~~  108 (115)
                      ...+++..
T Consensus       126 ~~~i~~~~  133 (152)
T 3heb_A          126 ANAIRQLG  133 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44555443

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=87.18  E-value=0.88  Score=34.64  Aligned_cols=44  Identities=14%  Similarity=0.140  Sum_probs=36.0

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEE---cCCChhhHHHHHHcCCCEEEEc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~d---GGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ...++.++++++..++.++.+-   |--+.+.++...++|+|.+.+-
T Consensus        67 ~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~  113 (345)
T 1nvm_A           67 HTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVA  113 (345)
T ss_dssp             SCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEEE
Confidence            4567788888887778888888   5457899999999999998775

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=87.14  E-value=1.4  Score=32.22  Aligned_cols=56  Identities=20%  Similarity=0.312  Sum_probs=38.6

Q ss_pred             CCCCEEEEEeeeCCCC-CcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFG-GQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~-gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|||=   ...||. ...   .+++-++.+++. ..+++|-+.|||+ .+....++++||+-+
T Consensus       158 aGADfVK---TSTGf~~~~g---At~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~Ri  216 (231)
T 3ndo_A          158 AGADFVK---TSTGFHPSGG---ASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRL  216 (231)
T ss_dssp             TTCSEEE---CCCSCCTTCS---CCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             HCcCEEE---cCCCCCCCCC---CCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhc
Confidence            5899995   566764 211   223344444443 3579999999998 478888899999965

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=86.99  E-value=2.3  Score=30.60  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ++..+.+++  .+++.+.+-     +.    .+...+.++++++.++++.+.+.-=++.+.++...++|||+++++.
T Consensus        32 ~~~~~al~~--gGv~~iel~-----~k----~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~   97 (224)
T 1vhc_A           32 LPLADTLAK--NGLSVAEIT-----FR----SEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG   97 (224)
T ss_dssp             HHHHHHHHH--TTCCEEEEE-----TT----STTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS
T ss_pred             HHHHHHHHH--cCCCEEEEe-----cc----CchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECC
Confidence            345566662  479988863     11    2345677888888877665555443478999999999999998774

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=86.90  E-value=4.5  Score=27.07  Aligned_cols=73  Identities=12%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+.+       .++-++++++..+++|+.+..+ -+.+......++||+.++.     +.-++.+-..
T Consensus        47 ~~~dlvl~D~~lp~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~-----Kp~~~~~L~~  114 (208)
T 1yio_A           47 EQHGCLVLDMRMPGMS-------GIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLP-----KPFEEQALLD  114 (208)
T ss_dssp             TSCEEEEEESCCSSSC-------HHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEE-----SSCCHHHHHH
T ss_pred             cCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEe-----CCCCHHHHHH
Confidence            3578887665556643       4556777777777888766554 4556778888999987754     4345555555


Q ss_pred             HHHHHH
Q 033625          103 LMRKSV  108 (115)
Q Consensus       103 ~l~~~~  108 (115)
                      .++..+
T Consensus       115 ~i~~~~  120 (208)
T 1yio_A          115 AIEQGL  120 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=86.88  E-value=4.3  Score=25.73  Aligned_cols=84  Identities=17%  Similarity=0.267  Sum_probs=50.4

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcC-CCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAG-ANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~G-ad~iv~Gsa   90 (115)
                      .+.....+.. ..+|.|++-..-|+..       .++-++++++..+++|+.+..+ -+.+......+.| ++.++.   
T Consensus        40 ~~~a~~~l~~-~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~---  108 (154)
T 2rjn_A           40 PLDALEALKG-TSVQLVISDMRMPEMG-------GEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLL---  108 (154)
T ss_dssp             HHHHHHHHTT-SCCSEEEEESSCSSSC-------HHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSEEEE---
T ss_pred             HHHHHHHHhc-CCCCEEEEecCCCCCC-------HHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchheeee---
Confidence            3333344432 3589888765556533       4456777777777888766555 4456677777887 887743   


Q ss_pred             ccCCCCHHHHHHHHHHHHH
Q 033625           91 VFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        91 if~~~d~~~~~~~l~~~~~  109 (115)
                        +.-++.+-...++..+.
T Consensus       109 --kP~~~~~L~~~i~~~~~  125 (154)
T 2rjn_A          109 --KPWEDEDVFKVVEKGLQ  125 (154)
T ss_dssp             --SSCCHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHH
Confidence              33355555555555443

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=86.85  E-value=1  Score=34.90  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=49.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCC-----CC-cccchhHHHHHHHHHhhCCCCcEEEE---cCCChhhHHHHHHcC
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGF-----GG-QKFMPEMMDKVRSLRNRYPSLDIEVD---GGLGPSTIAEAASAG   81 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~-----~g-q~~~~~~~~ki~~l~~~~~~~~i~~d---GGI~~~ni~~l~~~G   81 (115)
                      .+++.....++. -..|.+.+ -++|..     .| ..|....++.|+++++.. ++|+.+-   +|++++.+..+.++|
T Consensus       135 ~~~~~~~~av~~-~~a~al~I-hln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~-~vPVivK~vG~g~s~~~A~~l~~aG  211 (368)
T 3vkj_A          135 YGLKEFQDAIQM-IEADAIAV-HLNPAQEVFQPEGEPEYQIYALEKLRDISKEL-SVPIIVKESGNGISMETAKLLYSYG  211 (368)
T ss_dssp             CCHHHHHHHHHH-TTCSEEEE-ECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTC-SSCEEEECSSSCCCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHH-hcCCCeEE-EecchhhhhCCCCCchhhHHHHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHhCC
Confidence            455655554422 14566553 344431     11 233224677888888764 7899985   468999999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      +|.++++
T Consensus       212 ad~I~V~  218 (368)
T 3vkj_A          212 IKNFDTS  218 (368)
T ss_dssp             CCEEECC
T ss_pred             CCEEEEe
Confidence            9999985

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=86.73  E-value=2.8  Score=30.55  Aligned_cols=68  Identities=10%  Similarity=0.175  Sum_probs=43.6

Q ss_pred             CCCCEEEEEee--eCCCCCcccc-------------hhHHHHHHHHHhhCCCCcEEEEcCCC-------hhhHHHHHHcC
Q 033625           24 NPVEMVLVMTV--EPGFGGQKFM-------------PEMMDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAG   81 (115)
Q Consensus        24 ~~vD~vlvm~v--~pG~~gq~~~-------------~~~~~ki~~l~~~~~~~~i~~dGGI~-------~~ni~~l~~~G   81 (115)
                      .++|+|-+..-  +|-.+|.-..             ...++-++++|+.+.++|+.+.+-.|       .+-++.+.++|
T Consensus        43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aG  122 (268)
T 1qop_A           43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVG  122 (268)
T ss_dssp             TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcC
Confidence            57999987431  2323332211             23456688888875678888765344       36677899999


Q ss_pred             CCEEEEcccc
Q 033625           82 ANCIVAGSSV   91 (115)
Q Consensus        82 ad~iv~Gsai   91 (115)
                      +|++++...-
T Consensus       123 adgii~~d~~  132 (268)
T 1qop_A          123 VDSVLVADVP  132 (268)
T ss_dssp             CCEEEETTCC
T ss_pred             CCEEEEcCCC
Confidence            9988876443

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=86.62  E-value=4.2  Score=25.37  Aligned_cols=86  Identities=17%  Similarity=0.218  Sum_probs=53.9

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEE-EEcCCChhhHHHHHHcCCCEEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIE-VDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      +..+.++.+. . ...|.|++-..-|+.+|       ++-++++++.  .+++|+. +.+.-+.+......++|++.++ 
T Consensus        36 ~~~~al~~~~-~-~~~dlvl~D~~lp~~~g-------~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l-  105 (136)
T 3t6k_A           36 SGEEALQQIY-K-NLPDALICDVLLPGIDG-------YTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYL-  105 (136)
T ss_dssp             SHHHHHHHHH-H-SCCSEEEEESCCSSSCH-------HHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEE-
T ss_pred             CHHHHHHHHH-h-CCCCEEEEeCCCCCCCH-------HHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEE-
Confidence            3344444433 2 46898887666677554       4445666653  3467765 4555566777788899999874 


Q ss_pred             cccccCCCCHHHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                          .+.-++.+-...+++.+..
T Consensus       106 ----~KP~~~~~L~~~i~~~l~~  124 (136)
T 3t6k_A          106 ----AKPFEPQELVYRVKNILAR  124 (136)
T ss_dssp             ----ETTCCHHHHHHHHHHHHHC
T ss_pred             ----eCCCCHHHHHHHHHHHHhc
Confidence                3545677777777766653

>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A

Probab=86.54  E-value=3.5  Score=28.14  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=40.1

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCC--ChhhHHHHHHcCCCEEEEc
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGL--GPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI--~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+|.|++-..-|+.+|       ++-++++++.    .+++|+.+.-+-  +.+......++|++.++.=
T Consensus       119 ~~dlillD~~lp~~~G-------~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~K  181 (206)
T 3mm4_A          119 PFDYIFMDCQMPEMDG-------YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDK  181 (206)
T ss_dssp             SCSEEEEESCCSSSCH-------HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEET
T ss_pred             CCCEEEEcCCCCCCCH-------HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcC
Confidence            6899887766677544       4445555553    467887766664  5678888899999988654

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=86.34  E-value=3.8  Score=24.68  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.+++-..-|+..|       ++.++++++. ++.|+.+. +.-+.+......++|++.++     .+.-++.+-..
T Consensus        46 ~~~dlvi~D~~l~~~~g-------~~~~~~l~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~  112 (123)
T 1xhf_A           46 YDINLVIMDINLPGKNG-------LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYI-----TKPFNPRELTI  112 (123)
T ss_dssp             SCCSEEEECSSCSSSCH-------HHHHHHHHHH-CCCEEEEEESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHH
T ss_pred             CCCCEEEEcCCCCCCCH-------HHHHHHHHhC-CCCcEEEEECCCChHHHHHHHhcCcceEE-----eCCCCHHHHHH
Confidence            46788876544565443       4456666665 57776655 44566677788899999874     34456666666


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       113 ~i~~~~~~  120 (123)
T 1xhf_A          113 RARNLLSR  120 (123)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=86.25  E-value=2.8  Score=29.82  Aligned_cols=65  Identities=22%  Similarity=0.280  Sum_probs=45.3

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.+++  .+++.+.+---         .+...+.++++++.++++.+.+.-=++.+.++...++|||+++++.
T Consensus        32 ~~~~al~~--gGv~~iel~~k---------~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~   96 (214)
T 1wbh_A           32 PMAKALVA--GGVRVLNVTLR---------TECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG   96 (214)
T ss_dssp             HHHHHHHH--TTCCEEEEESC---------STTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS
T ss_pred             HHHHHHHH--cCCCEEEEeCC---------ChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC
Confidence            45666662  47998886421         1345677888888777665555443567899999999999998874

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=86.08  E-value=3.9  Score=29.40  Aligned_cols=58  Identities=17%  Similarity=0.145  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhCCCCcEEE-----EcC--C----ChhhHHHHHHcCCCEEEEcccccC-CCCHHHHHHHHHH
Q 033625           48 MDKVRSLRNRYPSLDIEV-----DGG--L----GPSTIAEAASAGANCIVAGSSVFG-APEPAHVISLMRK  106 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~~-----dGG--I----~~~ni~~l~~~Gad~iv~Gsaif~-~~d~~~~~~~l~~  106 (115)
                      .+-|+++|+.. ++|+..     .||  +    +.+.+.++.++|||.+++++.... .+...+.++.+++
T Consensus        58 ~~~i~~ir~~v-~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~  127 (232)
T 3igs_A           58 IDNLRMTRSLV-SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHH  127 (232)
T ss_dssp             HHHHHHHHTTC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHH
Confidence            45677777764 677641     144  2    445788999999999999987653 3455666665554

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=86.00  E-value=8.1  Score=29.33  Aligned_cols=75  Identities=13%  Similarity=0.115  Sum_probs=51.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+.+|-.       -++++++..+++|+.+ .|--+.+......+.||+.++     .+.-++.+-..
T Consensus        43 ~~~DlvllDi~mP~~dG~e-------ll~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~  110 (368)
T 3dzd_A           43 LFFPVIVLDVWMPDGDGVN-------FIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFL-----EKPFSVERFLL  110 (368)
T ss_dssp             BCCSEEEEESEETTEETTT-------HHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEE-----ESSCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCHHH-------HHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEE-----eCCCCHHHHHH
Confidence            4689888876678866543       3566666667788665 555567888889999999774     45456666666


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       111 ~i~~~l~~  118 (368)
T 3dzd_A          111 TIKHAFEE  118 (368)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=85.93  E-value=2  Score=26.37  Aligned_cols=72  Identities=8%  Similarity=0.156  Sum_probs=46.6

Q ss_pred             CCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh------hhHHHHHHcCCCEEEEcccccCCCCHHH
Q 033625           26 VEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------STIAEAASAGANCIVAGSSVFGAPEPAH   99 (115)
Q Consensus        26 vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~------~ni~~l~~~Gad~iv~Gsaif~~~d~~~   99 (115)
                      .|.|++-..-|+.       ..++-++++++..++.|+.+..+-..      +.+....++|++.+     +.+.-++.+
T Consensus        47 ~dlvi~D~~l~~~-------~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~-----l~KP~~~~~  114 (135)
T 3eqz_A           47 QDIIILDLMMPDM-------DGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINT-----FTKPINTEV  114 (135)
T ss_dssp             TEEEEEECCTTTT-------HHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEE-----EESSCCHHH
T ss_pred             CCEEEEeCCCCCC-------CHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCccee-----eCCCCCHHH
Confidence            7777765544553       35566788888778899888888776      45555667776655     334446666


Q ss_pred             HHHHHHHHHH
Q 033625          100 VISLMRKSVE  109 (115)
Q Consensus       100 ~~~~l~~~~~  109 (115)
                      -...+++...
T Consensus       115 l~~~l~~~~~  124 (135)
T 3eqz_A          115 LTCFLTSLSN  124 (135)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHHHh
Confidence            6555655443

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=85.93  E-value=0.95  Score=33.60  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             HHhHHHhHhCCCCCCEEEEEe--eeCCCCCcccch-------------hHHHHHHHHHhhCCCCcEEEEcCCCh------
Q 033625           13 VEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP-------------EMMDKVRSLRNRYPSLDIEVDGGLGP------   71 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~~-------------~~~~ki~~l~~~~~~~~i~~dGGI~~------   71 (115)
                      .+.+..+.+  .++|+|=+..  .+|=.+|.-.+.             ..++-++++|+.+.++|+..-|=.|+      
T Consensus        35 ~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~  112 (267)
T 3vnd_A           35 LKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGI  112 (267)
T ss_dssp             HHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCH
T ss_pred             HHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhH
Confidence            445555542  5899998753  245555544332             34778888887756889988865553      


Q ss_pred             -hhHHHHHHcCCCEEEEccccc
Q 033625           72 -STIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        72 -~ni~~l~~~Gad~iv~Gsaif   92 (115)
                       .-++.+.++|+|++++...-+
T Consensus       113 e~f~~~~~~aGvdgvii~Dlp~  134 (267)
T 3vnd_A          113 DEFYTKAQAAGVDSVLIADVPV  134 (267)
T ss_dssp             HHHHHHHHHHTCCEEEETTSCG
T ss_pred             HHHHHHHHHcCCCEEEeCCCCH
Confidence             357789999999998874433

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=85.85  E-value=2.6  Score=26.24  Aligned_cols=74  Identities=9%  Similarity=0.044  Sum_probs=41.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEc-CCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ...|.|++-.--|+..|       ++-++++++..  +++|+.+.. .-+.+......++|++.++     .+.-++.+-
T Consensus        45 ~~~dlvi~D~~l~~~~g-------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l  112 (140)
T 3n53_A           45 HHPDLVILDMDIIGENS-------PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYL-----TKPFNRNDL  112 (140)
T ss_dssp             HCCSEEEEETTC-------------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEE-----ESSCCHHHH
T ss_pred             CCCCEEEEeCCCCCCcH-------HHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeee-----eCCCCHHHH
Confidence            35788877655566444       33466677665  677766554 4456667777889998774     344466666


Q ss_pred             HHHHHHHHH
Q 033625          101 ISLMRKSVE  109 (115)
Q Consensus       101 ~~~l~~~~~  109 (115)
                      ...++..++
T Consensus       113 ~~~i~~~~~  121 (140)
T 3n53_A          113 LSRIEIHLR  121 (140)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666554

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=85.84  E-value=4.5  Score=24.99  Aligned_cols=86  Identities=9%  Similarity=0.175  Sum_probs=54.0

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.++.+. . ...|.|++-..-|+..       .++.++++++..++.|+.+..+ -+.+......+.|++.++  
T Consensus        36 ~~~~~al~~~~-~-~~~dlvilD~~lp~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l--  104 (133)
T 3b2n_A           36 DNGLDAMKLIE-E-YNPNVVILDIEMPGMT-------GLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYV--  104 (133)
T ss_dssp             SCHHHHHHHHH-H-HCCSEEEECSSCSSSC-------HHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEE--
T ss_pred             CCHHHHHHHHh-h-cCCCEEEEecCCCCCC-------HHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEE--
Confidence            33444444433 1 3578888765556644       3455677777667888776655 456677888899999874  


Q ss_pred             ccccCCCCHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~  109 (115)
                         .+.-++.+-...++..++
T Consensus       105 ---~Kp~~~~~L~~~i~~~~~  122 (133)
T 3b2n_A          105 ---LKERSIEELVETINKVNN  122 (133)
T ss_dssp             ---ETTSCHHHHHHHHHHHHC
T ss_pred             ---ECCCCHHHHHHHHHHHHc
Confidence               344466666666665544

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=85.53  E-value=0.71  Score=35.94  Aligned_cols=44  Identities=14%  Similarity=0.187  Sum_probs=35.5

Q ss_pred             CCcEEEEcCCC--hhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           60 SLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        60 ~~~i~~dGGI~--~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      +.|+.+.||++  ++-...+.+-++|.|.+|+.+...+|+.+.+++
T Consensus       318 ~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~~~  363 (400)
T 4gbu_A          318 KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEK  363 (400)
T ss_dssp             CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHH
T ss_pred             CCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHHHc
Confidence            68999999996  345566777889999999999988998666543

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=85.49  E-value=4.5  Score=28.08  Aligned_cols=58  Identities=10%  Similarity=0.243  Sum_probs=38.8

Q ss_pred             HHHHHHHhhCCCCcEEE-------EcCC----ChhhHHHHHHcCCCEEEEcccccCCC--CHHHHHHHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEV-------DGGL----GPSTIAEAASAGANCIVAGSSVFGAP--EPAHVISLMRKS  107 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~-------dGGI----~~~ni~~l~~~Gad~iv~Gsaif~~~--d~~~~~~~l~~~  107 (115)
                      +.++++++.. ++|+..       ++++    +.+.+..+.++|+|.+.+++.....+  .+.+.++++++.
T Consensus        46 ~~i~~i~~~~-~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~  116 (223)
T 1y0e_A           46 EDILAIKETV-DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH  116 (223)
T ss_dssp             HHHHHHHHHC-CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHh
Confidence            4466666654 677742       3344    45788899999999999998765443  456666666654

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=85.42  E-value=4.7  Score=24.84  Aligned_cols=75  Identities=11%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ...|.|++-..-|+..       .++-++++++  ..+++|+.+. +.-+.+......+.|++.++.     +.-++.+-
T Consensus        53 ~~~dlii~d~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~l  120 (143)
T 3cnb_A           53 VKPDVVMLDLMMVGMD-------GFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFG-----KPLNFTLL  120 (143)
T ss_dssp             TCCSEEEEETTCTTSC-------HHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEE-----SSCCHHHH
T ss_pred             cCCCEEEEecccCCCc-------HHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEe-----CCCCHHHH
Confidence            4588888655455533       4556777777  4567886654 555667778888999998743     44466666


Q ss_pred             HHHHHHHHHH
Q 033625          101 ISLMRKSVED  110 (115)
Q Consensus       101 ~~~l~~~~~~  110 (115)
                      ...++..++.
T Consensus       121 ~~~i~~~~~~  130 (143)
T 3cnb_A          121 EKTIKQLVEQ  130 (143)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            6667666653

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=85.25  E-value=3.3  Score=30.71  Aligned_cols=81  Identities=17%  Similarity=0.090  Sum_probs=47.8

Q ss_pred             EEEecCCCCHHhHHHhHhCCCCCCEEEEEe----eeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC---hhhHHH
Q 033625            4 GVALKPGTSVEEVYPLVEGANPVEMVLVMT----VEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAE   76 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~vD~vlvm~----v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~---~~ni~~   76 (115)
                      |+.. -.+|++..+.+.+  .++|.|.+++    ....+.|... ....+.++++++.. ++|+.+  ++.   .+.+..
T Consensus        23 g~i~-~~~~~~~a~~~~~--~Ga~~I~~l~p~~~~~~~~~G~~~-~~~~~~i~~I~~~~-~iPv~~--k~r~g~~~~~~~   95 (305)
T 2nv1_A           23 GVIM-DVINAEQAKIAEE--AGAVAVMALERVPADIRAAGGVAR-MADPTIVEEVMNAV-SIPVMA--KARIGHIVEARV   95 (305)
T ss_dssp             CEEE-EESSHHHHHHHHH--TTCSEEEECCC-------CCCCCC-CCCHHHHHHHHHHC-SSCEEE--EECTTCHHHHHH
T ss_pred             Ceee-cCCHHHHHHHHHH--cCCCEEEEcCCCcchhhhccCccc-CCCHHHHHHHHHhC-CCCEEe--cccccchHHHHH
Confidence            4443 3467887777763  5899996554    2222333211 12345566666654 678764  443   466788


Q ss_pred             HHHcCCCEEEEccccc
Q 033625           77 AASAGANCIVAGSSVF   92 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif   92 (115)
                      +.++|||.++ ++..+
T Consensus        96 ~~a~GAd~V~-~~~~l  110 (305)
T 2nv1_A           96 LEAMGVDYID-ESEVL  110 (305)
T ss_dssp             HHHHTCSEEE-ECTTS
T ss_pred             HHHCCCCEEE-EeccC
Confidence            8899999997 55443

>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...

Probab=85.21  E-value=0.84  Score=33.74  Aligned_cols=70  Identities=21%  Similarity=0.337  Sum_probs=48.3

Q ss_pred             EEEeeeC----CCCCcccchhHHHHHH-HHHh----hC-----CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCC
Q 033625           30 LVMTVEP----GFGGQKFMPEMMDKVR-SLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGA   94 (115)
Q Consensus        30 lvm~v~p----G~~gq~~~~~~~~ki~-~l~~----~~-----~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~   94 (115)
                      ++++-+|    | +|..-.++..+.+. .+|+    .+     .+++|.-=|+++++|+.++ .+.++|++-+|++..++
T Consensus       160 ~vIAYEPvWAIG-TG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a  238 (248)
T 1r2r_A          160 VVLAYEPVWAIG-TGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKP  238 (248)
T ss_dssp             EEEEECCGGGSS-SSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESGGGGST
T ss_pred             eEEEEecHHhhC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHHcCCCCCeeEechHHhCh
Confidence            3456777    4 45555544444433 2332    22     2488999999999999986 67899999999999987


Q ss_pred             CCHHHH
Q 033625           95 PEPAHV  100 (115)
Q Consensus        95 ~d~~~~  100 (115)
                      +++.+-
T Consensus       239 ~~F~~i  244 (248)
T 1r2r_A          239 EFVDII  244 (248)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766543

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}

Probab=85.18  E-value=3.2  Score=31.04  Aligned_cols=69  Identities=23%  Similarity=0.380  Sum_probs=47.6

Q ss_pred             EEeeeCCC---CCcccchhHHHHH-HHHHhh----C-----CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCC
Q 033625           31 VMTVEPGF---GGQKFMPEMMDKV-RSLRNR----Y-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPE   96 (115)
Q Consensus        31 vm~v~pG~---~gq~~~~~~~~ki-~~l~~~----~-----~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d   96 (115)
                      +++-+|-.   +|....++..+.+ +.+|+.    +     .+++|.-=|+++++|+.++ .+.++|++-+|++-.+ ++
T Consensus       184 vIAYEPvWAIGTG~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgASL~-~~  262 (271)
T 3krs_A          184 VIAYEPIWAIGTGVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGASLK-PT  262 (271)
T ss_dssp             EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCCTTTHHHHHHSTTCCEEEESGGGGS-TT
T ss_pred             EEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHhcCCCCCEEEeeHHhhh-HH
Confidence            55677732   4665555554443 233332    2     2588999999999999986 5789999999999887 56


Q ss_pred             HHHH
Q 033625           97 PAHV  100 (115)
Q Consensus        97 ~~~~  100 (115)
                      ..+-
T Consensus       263 F~~I  266 (271)
T 3krs_A          263 FAKI  266 (271)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}

Probab=85.17  E-value=4.9  Score=24.85  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=49.0

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHh----hCCCCcEE-EEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----RYPSLDIE-VDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~----~~~~~~i~-~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~   98 (115)
                      ..|.|++-..-|+..       .++.++++++    ..++.++. +.+.-+.+........| ++.+     |.+.-++.
T Consensus        60 ~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~-----l~KP~~~~  127 (146)
T 3ilh_A           60 WPSIICIDINMPGIN-------GWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYY-----VSKPLTAN  127 (146)
T ss_dssp             CCSEEEEESSCSSSC-------HHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEE-----ECSSCCHH
T ss_pred             CCCEEEEcCCCCCCC-------HHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCccee-----eeCCCCHH
Confidence            478888766667644       3455677776    45667755 55566677888888999 9987     34445666


Q ss_pred             HHHHHHHHHHHH
Q 033625           99 HVISLMRKSVED  110 (115)
Q Consensus        99 ~~~~~l~~~~~~  110 (115)
                      +-...+++....
T Consensus       128 ~L~~~i~~~~~~  139 (146)
T 3ilh_A          128 ALNNLYNKVLNE  139 (146)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh
Confidence            666666665543

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=85.15  E-value=2.2  Score=29.99  Aligned_cols=44  Identities=27%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCC---hhhHHHHHHcCCCEEEEc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVDGGLG---PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~dGGI~---~~ni~~l~~~Gad~iv~G   88 (115)
                      ...++-++++|+.+++.++..|.-+.   ...++.+.++|||++++-
T Consensus        44 ~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh   90 (218)
T 3jr2_A           44 AEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVS   90 (218)
T ss_dssp             HHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEE
T ss_pred             hcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEe
Confidence            34556688888876677777765432   224678899999999765

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=85.00  E-value=4.8  Score=24.57  Aligned_cols=75  Identities=9%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.|++-..-|+..       .++-++++++..  +++|+.+. +.-+.+......++|++.++.     +.-++.+-.
T Consensus        55 ~~dlvi~d~~~~~~~-------g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~l~  122 (140)
T 1k68_A           55 RPDLILLXLNLPKKD-------GREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT-----KSANLSQLF  122 (140)
T ss_dssp             CCSEEEECSSCSSSC-------HHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHH
T ss_pred             CCcEEEEecCCCccc-------HHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheec-----CCCCHHHHH
Confidence            578887655555533       445567777654  56776654 555677888889999998743     444666666


Q ss_pred             HHHHHHHHHH
Q 033625          102 SLMRKSVEDA  111 (115)
Q Consensus       102 ~~l~~~~~~~  111 (115)
                      ..++..++.+
T Consensus       123 ~~i~~~~~~~  132 (140)
T 1k68_A          123 QIVKGIEEFW  132 (140)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6676666554

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=84.73  E-value=5.5  Score=30.61  Aligned_cols=62  Identities=18%  Similarity=0.235  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc----cccCCCCHHHHHHHHHHHH
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS----SVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs----aif~~~d~~~~~~~l~~~~  108 (115)
                      ...+.|+++++.. +.|+.+=|-.+.+....+.++|+|.|++..    .+.......+.+.++++.+
T Consensus       216 ~~~~~i~~lr~~~-~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v  281 (368)
T 2nli_A          216 ISPRDIEEIAGHS-GLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERV  281 (368)
T ss_dssp             CCHHHHHHHHHHS-SSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHc-CCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh
Confidence            3566688888765 689998888999999999999999999952    2332333445555555443

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=84.72  E-value=7.1  Score=26.33  Aligned_cols=75  Identities=13%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-|+..       .++-++++++..++.|+.+..+-. .+......++||+.++.     +.-++.+-..
T Consensus        45 ~~~dlvllD~~l~~~~-------g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~-----Kp~~~~~l~~  112 (225)
T 1kgs_A           45 EPFDVVILDIMLPVHD-------GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLP-----KPFDLRELIA  112 (225)
T ss_dssp             SCCSEEEEESCCSSSC-------HHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEE-----SSCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEe-----CCCCHHHHHH
Confidence            4689888766566643       455677787777788877666544 45667778899988744     4456666666


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..+..
T Consensus       113 ~i~~~~~~  120 (225)
T 1kgs_A          113 RVRALIRR  120 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            67666554

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=84.71  E-value=1  Score=33.51  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=52.0

Q ss_pred             HHhHHHhHhCCCCCCEEEEEe--eeCCCCCcccch-------------hHHHHHHHHHhhCCCCcEEEEcCCC-------
Q 033625           13 VEEVYPLVEGANPVEMVLVMT--VEPGFGGQKFMP-------------EMMDKVRSLRNRYPSLDIEVDGGLG-------   70 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~~~-------------~~~~ki~~l~~~~~~~~i~~dGGI~-------   70 (115)
                      ++.+..+.+  .++|+|=+..  .+|-.+|...+.             ..++-++++|+.++++|+.+-|=.|       
T Consensus        37 ~~~~~~l~~--~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~  114 (271)
T 3nav_A           37 LAIMQTLID--AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGI  114 (271)
T ss_dssp             HHHHHHHHH--TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCH
T ss_pred             HHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhH
Confidence            345555542  4799997753  234455544432             5567788888776789998876333       


Q ss_pred             hhhHHHHHHcCCCEEEEccccc
Q 033625           71 PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        71 ~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      ..-++.+.++|+|++++...-+
T Consensus       115 ~~f~~~~~~aGvdGvIipDlp~  136 (271)
T 3nav_A          115 DDFYQRCQKAGVDSVLIADVPT  136 (271)
T ss_dssp             HHHHHHHHHHTCCEEEETTSCG
T ss_pred             HHHHHHHHHCCCCEEEECCCCH
Confidence            4457789999999998875444

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=84.70  E-value=5.6  Score=29.53  Aligned_cols=56  Identities=18%  Similarity=0.257  Sum_probs=39.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|||=   ...||....-   +++-++-+++. .++++|-+.|||+ .+....+.++||+-+
T Consensus       185 aGADfVK---TSTGf~~~GA---T~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~Ri  242 (260)
T 3r12_A          185 AGAHFVK---TSTGFGTGGA---TAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRI  242 (260)
T ss_dssp             TTCSEEE---CCCSSSSCCC---CHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             hCcCEEE---cCCCCCCCCC---CHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence            5899995   5567753332   33334444443 4579999999998 477888899999965

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=84.70  E-value=2  Score=31.30  Aligned_cols=65  Identities=23%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.+++  .+++.|-+=     +.    .+..++-|+++++.+++..+.+..=++.+.++...++|||++++..
T Consensus        50 ~~a~al~~--gGi~~iEvt-----~~----t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~  114 (232)
T 4e38_A           50 PLGKVLAE--NGLPAAEIT-----FR----SDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG  114 (232)
T ss_dssp             HHHHHHHH--TTCCEEEEE-----TT----STTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS
T ss_pred             HHHHHHHH--CCCCEEEEe-----CC----CCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC
Confidence            44445542  477777651     11    2346777888888777765555555688999999999999998764

>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*

Probab=84.62  E-value=0.94  Score=33.46  Aligned_cols=69  Identities=26%  Similarity=0.406  Sum_probs=47.9

Q ss_pred             EEeeeC----CCCCcccchhHHHHHH-HHHh----h-----CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625           31 VMTVEP----GFGGQKFMPEMMDKVR-SLRN----R-----YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        31 vm~v~p----G~~gq~~~~~~~~ki~-~l~~----~-----~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~   95 (115)
                      +++-+|    | +|..-.++..+.+. .+|+    .     ..+++|.-=|+++++|+.++ .+.++|++-+|++..+ +
T Consensus       160 vIAYEPvWAIG-TG~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~-~  237 (247)
T 1ney_A          160 VVAYEPVXAIG-TGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLK-P  237 (247)
T ss_dssp             EEEECCGGGTT-TSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESGGGGS-T
T ss_pred             EEEECChhhcC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCcCHhHHHHHHcCCCCCeeEeehHHHH-H
Confidence            556777    4 45555544444332 2333    1     12488999999999999876 6789999999999988 7


Q ss_pred             CHHHHH
Q 033625           96 EPAHVI  101 (115)
Q Consensus        96 d~~~~~  101 (115)
                      ++.+-+
T Consensus       238 ~F~~Ii  243 (247)
T 1ney_A          238 EFVDII  243 (247)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=84.46  E-value=13  Score=29.20  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE--EcCCChhhH-HHHHHcCCCEEEEccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV--DGGLGPSTI-AEAASAGANCIVAGSS   90 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~--dGGI~~~ni-~~l~~~Gad~iv~Gsa   90 (115)
                      +.++.++.| +.+|.|+++-+.+.++|.......-.-++.+++...+.|+.+  .||-+.+.. +.|.++|+-.+     
T Consensus       358 ~al~~~l~d-p~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~~~~~~L~~~Gip~~-----  431 (457)
T 2csu_A          358 RTAKLLLQD-PNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTY-----  431 (457)
T ss_dssp             HHHHHHHHS-TTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCCEE-----
T ss_pred             HHHHHHhcC-CCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchHHHHHHHHhCCCCcc-----
Confidence            456677777 899999987766656544311111111223333223466554  677555444 44556664433     


Q ss_pred             ccCCCCHHHHHHHHHHHHH
Q 033625           91 VFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        91 if~~~d~~~~~~~l~~~~~  109 (115)
                          +++.++++.+....+
T Consensus       432 ----~spe~Av~al~~l~~  446 (457)
T 2csu_A          432 ----ERPEDVASAAYALVE  446 (457)
T ss_dssp             ----SSHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHH
Confidence                688889888887765

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=84.41  E-value=5.6  Score=29.93  Aligned_cols=80  Identities=16%  Similarity=0.273  Sum_probs=44.5

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEe--eeCCCCCccc---chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMT--VEPGFGGQKF---MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~--v~pG~~gq~~---~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      .+++.-++..+.+++  .++|+|=|..  ..||...-.-   ......-|+.+++.  ++||++|=- +++.++..+++|
T Consensus        49 ~~~~~a~~~a~~~v~--~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~--~vpiSIDT~-~~~Va~aAl~aG  123 (294)
T 2dqw_A           49 LDPERALERAREMVA--EGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL--GVPVSVDTR-KPEVAEEALKLG  123 (294)
T ss_dssp             ----CCHHHHHHHHH--HTCSEEEEECC-----------CCHHHHHHHHHHHHHTT--CSCEEEECS-CHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH--CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC--CCeEEEECC-CHHHHHHHHHhC
Confidence            345555666666663  5899987764  4576433222   23333445555543  789999865 788888888888


Q ss_pred             CCEEEEcccc
Q 033625           82 ANCIVAGSSV   91 (115)
Q Consensus        82 ad~iv~Gsai   91 (115)
                      ++++--.|+.
T Consensus       124 a~iINdVsg~  133 (294)
T 2dqw_A          124 AHLLNDVTGL  133 (294)
T ss_dssp             CSEEECSSCS
T ss_pred             CCEEEECCCC
Confidence            8877666654

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=84.38  E-value=5.3  Score=32.17  Aligned_cols=61  Identities=16%  Similarity=0.229  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc----ccccCCCCHHHHHHHHHHHH
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG----SSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G----saif~~~d~~~~~~~l~~~~  108 (115)
                      .++.|+++++.. ++|+.+=|..+.+....+.++|+|.|+++    +.+......-+.+.++.+.+
T Consensus       331 ~~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v  395 (511)
T 1kbi_A          331 TWKDIEELKKKT-KLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPIL  395 (511)
T ss_dssp             CHHHHHHHHHHC-SSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHH
Confidence            466788888875 78999988889999999999999999994    22332333344455555444

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=84.28  E-value=4.4  Score=29.55  Aligned_cols=74  Identities=14%  Similarity=0.114  Sum_probs=51.8

Q ss_pred             EecC--CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            6 ALKP--GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         6 al~p--~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +..|  .++.+.++.+.+  .++|.|.+..    ..|.. ....++.++++|+  .++|+..-++.+..-     ..|+|
T Consensus        14 ~gDP~~~~t~~~~~~l~~--~GaD~ielG~----S~Gvt-~~~~~~~v~~ir~--~~~Pivlm~y~~n~i-----~~G~d   79 (240)
T 1viz_A           14 KLDPNKDLPDEQLEILCE--SGTDAVIIGG----SDGVT-EDNVLRMMSKVRR--FLVPCVLEVSAIEAI-----VPGFD   79 (240)
T ss_dssp             EECTTSCCCHHHHHHHHT--SCCSEEEECC--------C-HHHHHHHHHHHTT--SSSCEEEECSCGGGC-----CSCCS
T ss_pred             eeCCCccccHHHHHHHHH--cCCCEEEECC----CCCCC-HHHHHHHHHHhhC--cCCCEEEecCccccc-----cCCCC
Confidence            4555  466778877762  5899998754    12222 3457888888887  489999999984211     78999


Q ss_pred             EEEEcccccC
Q 033625           84 CIVAGSSVFG   93 (115)
Q Consensus        84 ~iv~Gsaif~   93 (115)
                      .+++-+-...
T Consensus        80 g~iiPdLp~e   89 (240)
T 1viz_A           80 LYFIPSVLNS   89 (240)
T ss_dssp             EEEEEEETTB
T ss_pred             EEEEcccCcc
Confidence            9999887765

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=84.08  E-value=5.7  Score=30.63  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc----ccccCCCCHHHHHHHHHH
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG----SSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G----saif~~~d~~~~~~~l~~  106 (115)
                      -+.+.++++++.. +.|+.+=|-.+.+....+.++|+|.+++.    +.+...+...+.+.++++
T Consensus       204 ~~w~~i~~lr~~~-~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~  267 (352)
T 3sgz_A          204 FCWNDLSLLQSIT-RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVA  267 (352)
T ss_dssp             CCHHHHHHHHHHC-CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc-CCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHH
Confidence            4556788888774 78999988899999999999999999984    223333333445555444

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=84.00  E-value=6.1  Score=24.94  Aligned_cols=58  Identities=22%  Similarity=0.243  Sum_probs=39.9

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc-CCChhhHHHHHHcCCCEEEEc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ...|.|++-.--|+..       .++.++++++..+..|+.+.. .-+.+......+.|++.++.-
T Consensus        50 ~~~dlii~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k  108 (153)
T 3cz5_A           50 TTPDIVVMDLTLPGPG-------GIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTK  108 (153)
T ss_dssp             TCCSEEEECSCCSSSC-------HHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEET
T ss_pred             CCCCEEEEecCCCCCC-------HHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEec
Confidence            3578887654445432       455677777777777866554 456777888899999988654

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=83.85  E-value=5.6  Score=24.38  Aligned_cols=73  Identities=11%  Similarity=0.109  Sum_probs=47.7

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..|.+++-..-|+..       .++-++++++..+..|+.+. +.-+.+......++|++.++.     +.-++.+-...
T Consensus        47 ~~dlvl~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~l~~~  114 (136)
T 1mvo_A           47 KPDLIVLDVMLPKLD-------GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMT-----KPFSPREVNAR  114 (136)
T ss_dssp             CCSEEEEESSCSSSC-------HHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEE-----SSCCHHHHHHH
T ss_pred             CCCEEEEecCCCCCC-------HHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEE-----CCCCHHHHHHH
Confidence            578887665556644       34556777776667776654 445666777888999998743     44466666666


Q ss_pred             HHHHHH
Q 033625          104 MRKSVE  109 (115)
Q Consensus       104 l~~~~~  109 (115)
                      ++..+.
T Consensus       115 i~~~~~  120 (136)
T 1mvo_A          115 VKAILR  120 (136)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*

Probab=83.72  E-value=2.9  Score=28.71  Aligned_cols=74  Identities=8%  Similarity=0.055  Sum_probs=48.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh-hCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-RYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~-~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..+|.|++-..-||.       ..++-++++++ ..++.|+.+-.+ -+.+......++||+.++     .+.-++.+-.
T Consensus        53 ~~~dlvllD~~mp~~-------~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l-----~Kp~~~~~L~  120 (225)
T 3klo_A           53 RSIQMLVIDYSRISD-------DVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVF-----YIDDDMDTLI  120 (225)
T ss_dssp             GGCCEEEEEGGGCCH-------HHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEE-----ETTCCHHHHH
T ss_pred             cCCCEEEEeCCCCCC-------CHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEE-----ecCCCHHHHH
Confidence            357888776666763       35666788887 678888665544 445566677789988774     4555666666


Q ss_pred             HHHHHHHH
Q 033625          102 SLMRKSVE  109 (115)
Q Consensus       102 ~~l~~~~~  109 (115)
                      ..++..++
T Consensus       121 ~~i~~~~~  128 (225)
T 3klo_A          121 KGMSKILQ  128 (225)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            66665543

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=83.63  E-value=5.2  Score=31.08  Aligned_cols=60  Identities=25%  Similarity=0.315  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc----ccCCCCHHHHHHHHHHH
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS----VFGAPEPAHVISLMRKS  107 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa----if~~~d~~~~~~~l~~~  107 (115)
                      .++.++++++.. +.|+.+=|-.+.+....+.++|+|.++++..    ........+.+.++++.
T Consensus       240 ~~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~a  303 (392)
T 2nzl_A          240 SWEDIKWLRRLT-SLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEA  303 (392)
T ss_dssp             CHHHHHHHC--C-CSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-CCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHH
Confidence            566678887764 6889988888999999999999999999422    22233334555555443

>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1

Probab=83.56  E-value=1.1  Score=33.32  Aligned_cols=71  Identities=21%  Similarity=0.443  Sum_probs=48.8

Q ss_pred             EEEeeeC----CCCCcccchhHHHHHH-HHHh----hC-----CCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCC
Q 033625           30 LVMTVEP----GFGGQKFMPEMMDKVR-SLRN----RY-----PSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGA   94 (115)
Q Consensus        30 lvm~v~p----G~~gq~~~~~~~~ki~-~l~~----~~-----~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~   94 (115)
                      +++.-+|    | +|..-.++..+.+. .+|+    .+     .+++|.-=|+++++|+.++ .+.++|++-+|++..++
T Consensus       169 ~vIAYEPvWAIG-TG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsL~a  247 (261)
T 1m6j_A          169 IILAYEPVWAIG-TGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDA  247 (261)
T ss_dssp             EEEEECCGGGSS-SSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEESGGGGSH
T ss_pred             EEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCcCHhhHHHHhcCCCCCeeEecHHHhCh
Confidence            3447777    4 45555544444433 2332    22     2488999999999999986 57899999999999887


Q ss_pred             CCHHHHH
Q 033625           95 PEPAHVI  101 (115)
Q Consensus        95 ~d~~~~~  101 (115)
                      +++.+-+
T Consensus       248 ~~F~~ii  254 (261)
T 1m6j_A          248 AKFKTII  254 (261)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665444

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=83.31  E-value=6.1  Score=24.42  Aligned_cols=76  Identities=9%  Similarity=0.086  Sum_probs=49.2

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.|++-.--|+..       .++-++++++..  +++|+.+. +.-+.+......++|++.++.     +.-++.+-.
T Consensus        62 ~~dlvi~D~~l~~~~-------g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~l~  129 (149)
T 1k66_A           62 RPAVILLDLNLPGTD-------GREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIV-----KPLEIDRLT  129 (149)
T ss_dssp             CCSEEEECSCCSSSC-------HHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHH
T ss_pred             CCcEEEEECCCCCCC-------HHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEe-----CCCCHHHHH
Confidence            578887654445533       455677777654  56776554 555677888889999998743     444666666


Q ss_pred             HHHHHHHHHHh
Q 033625          102 SLMRKSVEDAQ  112 (115)
Q Consensus       102 ~~l~~~~~~~~  112 (115)
                      ..++..++.+.
T Consensus       130 ~~i~~~~~~~~  140 (149)
T 1k66_A          130 ETVQTFIKYWL  140 (149)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            66666665543

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=83.22  E-value=2  Score=29.87  Aligned_cols=64  Identities=16%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE--EcCCChhhHHHHHHcCCCEEEEcc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV--DGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~--dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +.++.+++  .++|+|.+-  .+.       +...+.++++++.. +.++.+  .+-.+.+.+..+.++|||.+.+++
T Consensus        23 ~~~~~~~~--~G~~~i~l~--~~~-------~~~~~~i~~i~~~~-~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~   88 (212)
T 2v82_A           23 AHVGAVID--AGFDAVEIP--LNS-------PQWEQSIPAIVDAY-GDKALIGAGTVLKPEQVDALARMGCQLIVTPN   88 (212)
T ss_dssp             HHHHHHHH--HTCCEEEEE--TTS-------TTHHHHHHHHHHHH-TTTSEEEEECCCSHHHHHHHHHTTCCEEECSS
T ss_pred             HHHHHHHH--CCCCEEEEe--CCC-------hhHHHHHHHHHHhC-CCCeEEEeccccCHHHHHHHHHcCCCEEEeCC
Confidence            44555551  479998762  221       23345677776643 344433  333567789999999999998664

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=83.13  E-value=5.6  Score=23.87  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.+++-..-|+..|       ++-++++++ .++.|+.+. +.-+.+......++|++.++.     +.-++.+-..
T Consensus        45 ~~~dlvi~d~~l~~~~g-------~~~~~~l~~-~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~-----Kp~~~~~l~~  111 (122)
T 1zgz_A           45 QSVDLILLDINLPDENG-------LMLTRALRE-RSTVGIILVTGRSDRIDRIVGLEMGADDYVT-----KPLELRELVV  111 (122)
T ss_dssp             SCCSEEEEESCCSSSCH-------HHHHHHHHT-TCCCEEEEEESSCCHHHHHHHHHHTCSEEEE-----SSCCHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCh-------HHHHHHHHh-cCCCCEEEEECCCChhhHHHHHHhCHHHHcc-----CCCCHHHHHH
Confidence            45788876555566543       445666766 467776654 445666777888999998744     4446666666


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       112 ~i~~~~~~  119 (122)
T 1zgz_A          112 RVKNLLWR  119 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=82.85  E-value=4.7  Score=29.33  Aligned_cols=75  Identities=12%  Similarity=0.145  Sum_probs=53.3

Q ss_pred             EecC--CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            6 ALKP--GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         6 al~p--~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +..|  .++.+.++.+.+  .++|.|.+..    ..|.. ....++.++++|+  .++|+..-++-+ +.+    ++|+|
T Consensus        14 ~gDP~~~~t~~~~~~l~~--~GaD~IelG~----S~g~t-~~~~~~~v~~ir~--~~~Pivl~~y~~-n~i----~~gvD   79 (234)
T 2f6u_A           14 KLDPDRTNTDEIIKAVAD--SGTDAVMISG----TQNVT-YEKARTLIEKVSQ--YGLPIVVEPSDP-SNV----VYDVD   79 (234)
T ss_dssp             EECTTSCCCHHHHHHHHT--TTCSEEEECC----CTTCC-HHHHHHHHHHHTT--SCCCEEECCSSC-CCC----CCCSS
T ss_pred             eeCCCccccHHHHHHHHH--cCCCEEEECC----CCCCC-HHHHHHHHHHhcC--CCCCEEEecCCc-chh----hcCCC
Confidence            4555  466777777762  5899998854    22322 3567788888887  489999999985 222    78999


Q ss_pred             EEEEcccccCC
Q 033625           84 CIVAGSSVFGA   94 (115)
Q Consensus        84 ~iv~Gsaif~~   94 (115)
                      .+++-+-.+..
T Consensus        80 g~iipdLp~ee   90 (234)
T 2f6u_A           80 YLFVPTVLNSA   90 (234)
T ss_dssp             EEEEEEETTBS
T ss_pred             EEEEcccCCCC
Confidence            99998877653

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=82.84  E-value=5.7  Score=23.75  Aligned_cols=70  Identities=20%  Similarity=0.286  Sum_probs=44.9

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      ..|.+++-..-|+..       .++.++++++..++.|+.+..+ -+.+......++|++.++.     +.-++.+-...
T Consensus        47 ~~dlil~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~-----KP~~~~~l~~~  114 (120)
T 1tmy_A           47 KPDIVTMDITMPEMN-------GIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIV-----KPFQPSRVVEA  114 (120)
T ss_dssp             CCSEEEEECSCGGGC-------HHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEE-----SSCCHHHHHHH
T ss_pred             CCCEEEEeCCCCCCc-------HHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcceeEe-----CCCCHHHHHHH
Confidence            578887655556533       4455777777777788665544 5677778888999998743     44455554444


Q ss_pred             HHH
Q 033625          104 MRK  106 (115)
Q Consensus       104 l~~  106 (115)
                      ++.
T Consensus       115 i~~  117 (120)
T 1tmy_A          115 LNK  117 (120)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=82.76  E-value=4  Score=30.09  Aligned_cols=45  Identities=16%  Similarity=0.068  Sum_probs=32.6

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCC-------hhhHHHHHHcCCCEEEEccccc
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLG-------PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~-------~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .++-++++|+. .++|+.+.|=.|       ..-++.+.++|+|++++...-+
T Consensus        79 ~~~~v~~ir~~-~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~  130 (271)
T 1ujp_A           79 ALELVREVRAL-TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPP  130 (271)
T ss_dssp             HHHHHHHHHHH-CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCG
T ss_pred             HHHHHHHHHhc-CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCH
Confidence            45668888877 689998875333       3456678999999888875544

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=82.74  E-value=6.3  Score=24.19  Aligned_cols=74  Identities=11%  Similarity=0.042  Sum_probs=48.4

Q ss_pred             CCCEEEEEeeeC-CCCCcccchhHHHHHHHHHhhCCCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEP-GFGGQKFMPEMMDKVRSLRNRYPSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~p-G~~gq~~~~~~~~ki~~l~~~~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ..|.|++-.-.| +..       .++-++++++. ++.|+.+. +.-+.+......+.|++.++.     +.-++.+-..
T Consensus        54 ~~dlii~d~~~~~~~~-------g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~-----kp~~~~~l~~  120 (140)
T 3cg0_A           54 RPDIALVDIMLCGALD-------GVETAARLAAG-CNLPIIFITSSQDVETFQRAKRVNPFGYLA-----KPVAADTLHR  120 (140)
T ss_dssp             CCSEEEEESSCCSSSC-------HHHHHHHHHHH-SCCCEEEEECCCCHHHHHHHHTTCCSEEEE-----ESCCHHHHHH
T ss_pred             CCCEEEEecCCCCCCC-------HHHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHhcCCCEEEe-----CCCCHHHHHH
Confidence            588888765555 333       34556666666 67776654 555677778889999998744     3446666666


Q ss_pred             HHHHHHHHH
Q 033625          103 LMRKSVEDA  111 (115)
Q Consensus       103 ~l~~~~~~~  111 (115)
                      .++..++..
T Consensus       121 ~i~~~~~~~  129 (140)
T 3cg0_A          121 SIEMAIHKK  129 (140)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            677666543

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=82.69  E-value=6.9  Score=25.28  Aligned_cols=68  Identities=13%  Similarity=0.180  Sum_probs=42.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh---hHHHHHHcCCCEEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS---TIAEAASAGANCIVA   87 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~---ni~~l~~~Gad~iv~   87 (115)
                      +..+.++.+. . ...|.|++-.--|+..       .++-++++++..+ .++.+..+-..+   .+....++|++.++.
T Consensus        59 ~~~~al~~l~-~-~~~dlvilD~~l~~~~-------g~~l~~~lr~~~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~  128 (164)
T 3t8y_A           59 DGLEAVEKAI-E-LKPDVITMDIEMPNLN-------GIEALKLIMKKAP-TRVIMVSSLTEEGAAITIEALRNGAVDFIT  128 (164)
T ss_dssp             SHHHHHHHHH-H-HCCSEEEECSSCSSSC-------HHHHHHHHHHHSC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHhc-c-CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCC-ceEEEEecCCccchHHHHHHHHcCcCEEEe
Confidence            3444444433 1 3578887655556544       4555777777766 777766665443   466788999998865


Q ss_pred             c
Q 033625           88 G   88 (115)
Q Consensus        88 G   88 (115)
                      =
T Consensus       129 K  129 (164)
T 3t8y_A          129 K  129 (164)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=82.58  E-value=3.4  Score=30.30  Aligned_cols=56  Identities=20%  Similarity=0.289  Sum_probs=37.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|||=   +..||+...-   +++-++-+++. .++++|-+.|||+ .+.+..++++||+-+
T Consensus       169 aGADfVK---TSTGf~~ggA---t~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~ri  226 (239)
T 3ngj_A          169 AGAEYVK---TSTGFGTHGA---TPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRI  226 (239)
T ss_dssp             HTCSEEE---CCCSSSSCCC---CHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred             HCcCEEE---CCCCCCCCCC---CHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccce
Confidence            4899995   5567653222   22334444433 3469999999998 477888899999955

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A

Probab=81.62  E-value=4  Score=30.19  Aligned_cols=69  Identities=16%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             EEEeeeCCC---CCcccchhHHHHH-HHHHhh---------CCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCC
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDKV-RSLRNR---------YPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~ki-~~l~~~---------~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~   95 (115)
                      +++.-+|-.   +|....++..+.+ +.+|+.         ..+++|.-=|+++++|+.++ .+.++|++-+|++-.+ +
T Consensus       164 ~vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~-~  242 (255)
T 3qst_A          164 VVIAYEPIWAIGTGKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNELAACPDVDGFLVGGASLE-A  242 (255)
T ss_dssp             EEEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCTTTHHHHHHSTTCCEEEECGGGGS-T
T ss_pred             EEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcCHhHHHHHhcCCCCCEEEeeHHHhh-H
Confidence            345777821   4665555444443 233332         13588999999999999886 5789999999999777 4


Q ss_pred             CHHH
Q 033625           96 EPAH   99 (115)
Q Consensus        96 d~~~   99 (115)
                      +..+
T Consensus       243 ~F~~  246 (255)
T 3qst_A          243 GFIN  246 (255)
T ss_dssp             THHH
T ss_pred             HHHH
Confidence            6543

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=81.46  E-value=2  Score=40.34  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             CCCEEEEEeeeCCCCCcc-----cchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHH-----------HcCCCEEEE
Q 033625           25 PVEMVLVMTVEPGFGGQK-----FMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAA-----------SAGANCIVA   87 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~-----~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~-----------~~Gad~iv~   87 (115)
                      ++|.++++.+.-+-+|-+     +....+..+.++++. .++|+.+.|||- .+-+...+           ..|||++-+
T Consensus       723 g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~-~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~  801 (2051)
T 2uv8_G          723 HPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRH-PNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLF  801 (2051)
T ss_dssp             STTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTC-TTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEEC
T ss_pred             CCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhc-CCceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeee
Confidence            788876665554433322     234455667888776 379999999995 45556666           799999999


Q ss_pred             cccccC
Q 033625           88 GSSVFG   93 (115)
Q Consensus        88 Gsaif~   93 (115)
                      |+....
T Consensus       802 GTrf~~  807 (2051)
T 2uv8_G          802 GSRVMI  807 (2051)
T ss_dssp             SGGGTT
T ss_pred             chHHHh
Confidence            998664

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=81.41  E-value=6.3  Score=26.77  Aligned_cols=86  Identities=13%  Similarity=0.097  Sum_probs=54.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.++.+. . ...|.|++-..-|+..       .++-++++++..+++|+.+..+ -+.+......++||+.++   
T Consensus        39 ~~~~a~~~~~-~-~~~dlvllD~~l~~~~-------g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l---  106 (233)
T 1ys7_A           39 DGAEALRSAT-E-NRPDAIVLDINMPVLD-------GVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYL---  106 (233)
T ss_dssp             SHHHHHHHHH-H-SCCSEEEEESSCSSSC-------HHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEE---
T ss_pred             CHHHHHHHHH-h-CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCCCEEE---
Confidence            3334444333 2 4689888765556643       4556777777767888766554 455666777889999874   


Q ss_pred             cccCCCCHHHHHHHHHHHHHH
Q 033625           90 SVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        90 aif~~~d~~~~~~~l~~~~~~  110 (115)
                        .+.-++.+-...++..++.
T Consensus       107 --~Kp~~~~~L~~~i~~~~~~  125 (233)
T 1ys7_A          107 --VKPFVLAELVARVKALLRR  125 (233)
T ss_dssp             --ESSCCHHHHHHHHHHHHHH
T ss_pred             --eCCCCHHHHHHHHHHHHhh
Confidence              3445666666667666654

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=81.35  E-value=6.5  Score=28.16  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=38.8

Q ss_pred             HHHHHHHHhhCCCCcEE----EE-cC----C--ChhhHHHHHHcCCCEEEEccccc-CCCCHHHHHHHHHH
Q 033625           48 MDKVRSLRNRYPSLDIE----VD-GG----L--GPSTIAEAASAGANCIVAGSSVF-GAPEPAHVISLMRK  106 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~----~d-GG----I--~~~ni~~l~~~Gad~iv~Gsaif-~~~d~~~~~~~l~~  106 (115)
                      .+-|+++|+.. ++|+.    -| ||    |  +.+.+.++.++|||++++++... +.+...+.++.+++
T Consensus        58 ~~~i~~ir~~v-~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~  127 (229)
T 3q58_A           58 IENLRTVRPHL-SVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRL  127 (229)
T ss_dssp             HHHHHHHGGGC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHH
Confidence            45678887764 67754    22 22    2  34578899999999999998754 33455666666654

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=81.30  E-value=15  Score=27.55  Aligned_cols=82  Identities=18%  Similarity=0.085  Sum_probs=48.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHH---HHHHHhh-CCCCcEEE-EcCCCh-hhHH---HHHHcCCCEEEEcccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNR-YPSLDIEV-DGGLGP-STIA---EAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~k---i~~l~~~-~~~~~i~~-dGGI~~-~ni~---~l~~~Gad~iv~Gsaif~~   94 (115)
                      .++|.+.++    |.+|..+.-..-||   ++...+. ...+|+.+ .|+.+. +.+.   ...++|||.+.+..-.|..
T Consensus        57 ~Gv~Gi~v~----GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~  132 (315)
T 3na8_A           57 GGVHAIAPL----GSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWK  132 (315)
T ss_dssp             TTCSEEECS----SGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSC
T ss_pred             cCCCEEEEC----ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence            589988644    66666543222233   3333333 23466554 333333 3333   4578999999999887766


Q ss_pred             CCHHHHHHHHHHHHH
Q 033625           95 PEPAHVISLMRKSVE  109 (115)
Q Consensus        95 ~d~~~~~~~l~~~~~  109 (115)
                      ++.++..+.++++.+
T Consensus       133 ~s~~~l~~~f~~va~  147 (315)
T 3na8_A          133 LNEAEVFQHYRAVGE  147 (315)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777666666666544

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=81.28  E-value=12  Score=26.27  Aligned_cols=84  Identities=14%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.++.+. . ...|.|++-..-|+       ...++-++++++ .+++|+.+ .+--+.+.+....++||+.++.  
T Consensus        69 ~~~~al~~~~-~-~~~DlvllD~~lp~-------~~G~~l~~~lr~-~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~--  136 (249)
T 3q9s_A           69 SAMNGLIKAR-E-DHPDLILLDLGLPD-------FDGGDVVQRLRK-NSALPIIVLTARDTVEEKVRLLGLGADDYLI--  136 (249)
T ss_dssp             SHHHHHHHHH-H-SCCSEEEEECCSCH-------HHHHHHHHHHHT-TCCCCEEEEESCCSHHHHHHHHHHTCSEEEE--
T ss_pred             CHHHHHHHHh-c-CCCCEEEEcCCCCC-------CCHHHHHHHHHc-CCCCCEEEEECCCCHHHHHHHHHCCCcEEEE--
Confidence            3344444433 2 46888887655565       245666778877 56777665 4555667888899999998854  


Q ss_pred             cccCCCCHHHHHHHHHHHHH
Q 033625           90 SVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        90 aif~~~d~~~~~~~l~~~~~  109 (115)
                         +.-++.+-...++..++
T Consensus       137 ---Kp~~~~~L~~~i~~~l~  153 (249)
T 3q9s_A          137 ---KPFHPDELLARVKVQLR  153 (249)
T ss_dssp             ---SSCCHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHh
Confidence               44566666666666554

>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS}

Probab=81.14  E-value=1.3  Score=33.89  Aligned_cols=77  Identities=16%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             EEEeeeCCC---CCcccchhHHHH-HHHHHhh--------CCCCcEEEEcCCChhhHHH--HHHcCCCEEEEcccccCCC
Q 033625           30 LVMTVEPGF---GGQKFMPEMMDK-VRSLRNR--------YPSLDIEVDGGLGPSTIAE--AASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        30 lvm~v~pG~---~gq~~~~~~~~k-i~~l~~~--------~~~~~i~~dGGI~~~ni~~--l~~~Gad~iv~Gsaif~~~   95 (115)
                      ++++-+|-.   +|..-.++..+. .+.+|+.        ..+++|.-=|+++++|+.+  + ..++|++-+|++-.+.+
T Consensus       218 vVIAYEPVWAIGTGk~Atpe~aqevh~~IR~~l~~~~~~~a~~vrILYGGSV~~~n~~~~~l-~~dVDG~LVGgASL~a~  296 (310)
T 3s6d_A          218 VIFAYEPVWAIGKPQPARVDHVGAVVSGIRSVIERIDRHRKGEVRILYGGSAGPGLWGPGGL-GKEVDGMFLGRFAHDIE  296 (310)
T ss_dssp             EEEEECCGGGC-----CCHHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEECTTTTTTTSG-GGTCSEEEECGGGGSHH
T ss_pred             eEEEECChhhccCCCCCCHHHHHHHHHHHHHHHHHhhhcccCceeEEEcCccCHHHHhhhcc-cCCCCEEEeeheeecHH
Confidence            456778832   455544444333 2233332        2358899999999999998  6 58999999999999888


Q ss_pred             CHHHHHHHHHHH
Q 033625           96 EPAHVISLMRKS  107 (115)
Q Consensus        96 d~~~~~~~l~~~  107 (115)
                      ++.+-++++.+.
T Consensus       297 ~F~~Ii~e~~~~  308 (310)
T 3s6d_A          297 GVRKVVREVEES  308 (310)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            877777666543

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=81.13  E-value=4.3  Score=29.10  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=45.8

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      ++..+.+++  .+++.+.+-     +.    .+...+.++++++.++++.+.+.-=++.+.++...++|||+++++.
T Consensus        41 ~~~~~al~~--gGv~~iel~-----~k----~~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p~  106 (225)
T 1mxs_A           41 LPLADALAA--GGIRTLEVT-----LR----SQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG  106 (225)
T ss_dssp             HHHHHHHHH--TTCCEEEEE-----SS----STHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS
T ss_pred             HHHHHHHHH--CCCCEEEEe-----cC----CccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeCC
Confidence            345666662  479988763     11    2355677888888777766555444567889999999999998774

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=81.08  E-value=8.1  Score=25.13  Aligned_cols=85  Identities=20%  Similarity=0.257  Sum_probs=54.9

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcE-EEEcCCChhhHHHHHHcCCCEEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDI-EVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      .+..+.++.+- . ..+|.|++--.-||-+|       ++-++++|+.  .+++|| .+.+--+.+...+..++|||.++
T Consensus        44 ~~g~~al~~~~-~-~~~DlillD~~MP~mdG-------~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl  114 (134)
T 3to5_A           44 DDGLTALPMLK-K-GDFDFVVTDWNMPGMQG-------IDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYI  114 (134)
T ss_dssp             SSHHHHHHHHH-H-HCCSEEEEESCCSSSCH-------HHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEE
T ss_pred             CCHHHHHHHHH-h-CCCCEEEEcCCCCCCCH-------HHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEE
Confidence            34445555443 2 46899988777788654       4556666653  356775 46677778889999999999874


Q ss_pred             EcccccCCCCHHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                           .+.=++.+-...+++.+
T Consensus       115 -----~KP~~~~~L~~~i~~~l  131 (134)
T 3to5_A          115 -----VKPFTAATLKEKLDKIF  131 (134)
T ss_dssp             -----ESSCCHHHHHHHHHHHC
T ss_pred             -----ECCCCHHHHHHHHHHHH
Confidence                 34336655555555443

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=80.98  E-value=11  Score=26.76  Aligned_cols=89  Identities=18%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-Ch-hhHHHHHHcCCCEEEEccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GP-STIAEAASAGANCIVAGSS   90 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~-~ni~~l~~~Gad~iv~Gsa   90 (115)
                      .+.++.+.+  .++|++.+--..-.|-- . .....+.++++|+.. +.++.+.==+ ++ +-++.+.++|||++.++..
T Consensus        20 ~~~i~~~~~--~Gad~ihldi~DG~fvp-~-~~~g~~~v~~lr~~~-~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e   94 (230)
T 1tqj_A           20 GEEIKAVDE--AGADWIHVDVMDGRFVP-N-ITIGPLIVDAIRPLT-KKTLDVHLMIVEPEKYVEDFAKAGADIISVHVE   94 (230)
T ss_dssp             HHHHHHHHH--TTCSEEEEEEEBSSSSS-C-BCBCHHHHHHHGGGC-CSEEEEEEESSSGGGTHHHHHHHTCSEEEEECS
T ss_pred             HHHHHHHHH--cCCCEEEEEEEecCCCc-c-hhhhHHHHHHHHhhc-CCcEEEEEEccCHHHHHHHHHHcCCCEEEECcc
Confidence            345555541  47999876654322211 1 122335677777664 3444422222 22 3578899999999999854


Q ss_pred             ccCCCCHHHHHHHHHH
Q 033625           91 VFGAPEPAHVISLMRK  106 (115)
Q Consensus        91 if~~~d~~~~~~~l~~  106 (115)
                      =+..+.+.+.++.+++
T Consensus        95 ~~~~~~~~~~~~~i~~  110 (230)
T 1tqj_A           95 HNASPHLHRTLCQIRE  110 (230)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHH
Confidence            1223566666666654

>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A

Probab=80.83  E-value=7.2  Score=28.22  Aligned_cols=75  Identities=15%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             HHhHHHhHhCCCCCCEEEEEee----eCCCCCcccchhHHHHHHHH---HhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v----~pG~~gq~~~~~~~~ki~~l---~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      ++.+++++. ++.+|.+.+.+-    .-|..++...+..+.-++++   .+. .++++.+..+ +++..+.+.+.|.+.+
T Consensus       158 v~~~~eIa~-~~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~a-~G~~~~v~~~-d~~~~~~~~~~G~~~~  234 (256)
T 1dxe_A          158 VDNVDAIAA-TEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASA-HGKPSGILAP-VEADARRYLEWGATFV  234 (256)
T ss_dssp             HHTHHHHHT-STTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHH-TTCCEEEECC-SHHHHHHHHHTTCCEE
T ss_pred             HHhHHHHhC-CCCCCEEEEChHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH-hCCceEEecC-CHHHHHHHHHcCCCEE
Confidence            467777773 358999998764    33555555555444444444   222 2566666665 8999999999999999


Q ss_pred             EEccc
Q 033625           86 VAGSS   90 (115)
Q Consensus        86 v~Gsa   90 (115)
                      ++++.
T Consensus       235 s~~~d  239 (256)
T 1dxe_A          235 AVGSD  239 (256)
T ss_dssp             EEEEH
T ss_pred             EechH
Confidence            99964

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=80.48  E-value=4.4  Score=24.13  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      ...|.+++-.--|+..       .++.++++++..++.|+.+..+-.... ....+.|++.++
T Consensus        44 ~~~dlvl~D~~l~~~~-------g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l   98 (116)
T 3a10_A           44 GNYDLVILDIEMPGIS-------GLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV   98 (116)
T ss_dssp             SCCSEEEECSCCSSSC-------HHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred             CCCCEEEEECCCCCCC-------HHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence            4578887655556543       345567777766788887776654444 556678888764

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=80.46  E-value=7.7  Score=23.70  Aligned_cols=86  Identities=16%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEEE-cCCChhhHHHHHHcCCCEEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVD-GGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~d-GGI~~~ni~~l~~~Gad~iv   86 (115)
                      .+..+.++.+... ...|.|++-..-|+..       .++-++++++.  .+++|+.+. +--+.+......++|++.++
T Consensus        37 ~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~-------g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l  108 (129)
T 3h1g_A           37 EHGVEAWEKLDAN-ADTKVLITDWNMPEMN-------GLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYI  108 (129)
T ss_dssp             SSHHHHHHHHHHC-TTCCEEEECSCCSSSC-------HHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEE
T ss_pred             CCHHHHHHHHHhC-CCCCEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEE
Confidence            3444555544321 3578877654556644       44556777764  356776654 44556677788899999874


Q ss_pred             EcccccCCCCHHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      .     +.-++.+-...++..+
T Consensus       109 ~-----KP~~~~~L~~~l~~~l  125 (129)
T 3h1g_A          109 V-----KPFTPQVLKEKLEVVL  125 (129)
T ss_dssp             E-----SCCCHHHHHHHHHHHH
T ss_pred             e-----CCCCHHHHHHHHHHHh
Confidence            3     4456666666665544

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=80.45  E-value=16  Score=27.20  Aligned_cols=82  Identities=12%  Similarity=0.179  Sum_probs=48.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHH---HHHHHhh-CCCCcEEE-EcCCChhh----HHHHHHcCCCEEEEcccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNR-YPSLDIEV-DGGLGPST----IAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~k---i~~l~~~-~~~~~i~~-dGGI~~~n----i~~l~~~Gad~iv~Gsaif~~   94 (115)
                      .++|.+.++    |.+|..+.-..-||   ++...+. ...+|+.+ .|+.+.+.    .+...++|||.+.+..-.|..
T Consensus        48 ~Gv~gi~v~----GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~  123 (304)
T 3l21_A           48 QGCDGLVVS----GTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSK  123 (304)
T ss_dssp             TTCSEEEES----STTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSC
T ss_pred             cCCCEEEeC----ccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence            589998654    66776553222233   3333333 33566554 33333332    234567899999999887766


Q ss_pred             CCHHHHHHHHHHHHH
Q 033625           95 PEPAHVISLMRKSVE  109 (115)
Q Consensus        95 ~d~~~~~~~l~~~~~  109 (115)
                      ++.++..+.++++.+
T Consensus       124 ~s~~~l~~~f~~va~  138 (304)
T 3l21_A          124 PPQRGLQAHFTAVAD  138 (304)
T ss_dssp             CCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777666666665543

>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A

Probab=80.20  E-value=8.7  Score=24.16  Aligned_cols=74  Identities=8%  Similarity=0.114  Sum_probs=47.8

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcEEEE-cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVD-GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~d-GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.|++-..-|+.+|       ++-++++++..  +++|+.+- +.-+.+.+....++||+.++     .+.-++.+-.
T Consensus        61 ~~dlillD~~lp~~~g-------~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l-----~KP~~~~~L~  128 (149)
T 1i3c_A           61 RPNLILLDLNLPKKDG-------REVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYL-----TKSRNLKDLF  128 (149)
T ss_dssp             CCSEEEECSCCSSSCH-------HHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHH
T ss_pred             CCCEEEEeCCCCCCcH-------HHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEE-----ECCCCHHHHH
Confidence            5788887655676544       44566666542  56776655 44566778888899999874     3444666666


Q ss_pred             HHHHHHHHH
Q 033625          102 SLMRKSVED  110 (115)
Q Consensus       102 ~~l~~~~~~  110 (115)
                      ..++...+.
T Consensus       129 ~~i~~~~~~  137 (149)
T 1i3c_A          129 KMVQGIESF  137 (149)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665543

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0

Probab=80.19  E-value=4.3  Score=29.69  Aligned_cols=77  Identities=14%  Similarity=0.163  Sum_probs=49.2

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeee----CCCCCcccchhHHHHHHHHHhh--CCCCcEEEEcCCChhhH-HHHHHcCCCE
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVE----PGFGGQKFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPSTI-AEAASAGANC   84 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~----pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~ni-~~l~~~Gad~   84 (115)
                      -++.+++++ +++.+|.+.+.+-+    -|..++...+..+.-++++...  ..++++.+-++ +++.. +.+.+.|.+.
T Consensus       155 av~~~~eIa-a~~~vd~l~iG~~DL~~~lg~~~~~~~p~v~~a~~~iv~aa~aaG~~~g~~~~-~~~~~~~~~~~~G~~~  232 (261)
T 3qz6_A          155 AVEDIDSIL-AVQGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQGVVKGFFTA-ADAAKMGWAVERGAQM  232 (261)
T ss_dssp             HHHTHHHHH-TSTTCCEEEECHHHHHHHTTCTTCTTCHHHHHHHHHHHHHHHHHTCEEEEEES-SCGGGGHHHHHTTCCE
T ss_pred             HHHHHHHHh-CCCCCCEEEECHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeC-CHHHHHHHHHHCCCCE
Confidence            346777777 33689999886533    3444444444443334433211  12577666655 78888 9999999999


Q ss_pred             EEEccc
Q 033625           85 IVAGSS   90 (115)
Q Consensus        85 iv~Gsa   90 (115)
                      +++++.
T Consensus       233 ~s~~~D  238 (261)
T 3qz6_A          233 LLWSGD  238 (261)
T ss_dssp             EEEEEH
T ss_pred             EEEhhH
Confidence            999964

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=80.05  E-value=2.4  Score=34.44  Aligned_cols=74  Identities=16%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--CCCh----hhHHHHHHcC-CC
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--GLGP----STIAEAASAG-AN   83 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--GI~~----~ni~~l~~~G-ad   83 (115)
                      +.++.+++.++. .+.|-+.+....|.+- ++....-++.|.++++.+ ++|+.||.  |+..    +-.+...+.| ||
T Consensus       200 id~e~le~aI~e-~ga~~i~~V~~Ttt~y-~p~~~ddI~eIaeIch~~-gIpllVDeAhGah~~~~~~lp~sA~~~GrAD  276 (501)
T 3hl2_A          200 TDLKAVEAKVQE-LGPDCILCIHSTTSCF-APRVPDRLEELAVICANY-DIPHIVNNAYGVQSSKCMHLIQQGARVGRID  276 (501)
T ss_dssp             ECHHHHHHHHHH-HCGGGEEEEEEECSCC-TTBCCCCHHHHHHHHHHH-TCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHh-cCCCcEEEEEecCCCC-CCcccccHHHHHHHHHHc-CCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence            467888888854 2456666665665543 233335566777777664 79999996  3333    2233466779 99


Q ss_pred             EEEE
Q 033625           84 CIVA   87 (115)
Q Consensus        84 ~iv~   87 (115)
                      .+|.
T Consensus       277 ~vVq  280 (501)
T 3hl2_A          277 AFVQ  280 (501)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	115
d1h1ya_	220	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {R	1e-29
d1rpxa_	230	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	7e-29
d1tqja_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {S	5e-27
d1tqxa_	221	c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P	2e-24
d2flia1	217	c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimera	4e-23
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	4e-22
d2czda1	206	c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decar	4e-07
d1km4a_	212	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	1e-04
d1dbta_	237	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	2e-04
d1o4ua1	170	c.1.17.1 (A:104-273) Quinolinic acid phosphoribosy	4e-04
d1eixa_	231	c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl	0.002

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Length = 220

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  104 bits (259), Expect = 1e-29
 Identities = 91/112 (81%), Positives = 101/112 (90%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           MRPGV+L+PGT VEEV+PLVE  NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 109 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 168

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
           LDIEVDGGLGPSTI  AASAGANCIVAGSS+FGA EP  VIS +RKSVE +Q
Sbjct: 169 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQ 220

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  102 bits (254), Expect = 7e-29
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR----SLRN 56
            + GV L PGT +  +  +++    V++VL+M+V PGFGGQ F+   + K+         
Sbjct: 119 AKAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAE 175

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
           R  +  IEVDGG+GP    +   AGAN +VAGS+VFGAP+ A  I  ++ S 
Sbjct: 176 RGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSK 227

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score = 97.1 bits (241), Expect = 5e-27
 Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 7/112 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
            + G  L P T ++ +  ++      +++L+M+V PGFGGQ F+PE++ K+R+LR     
Sbjct: 111 KKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 167

Query: 61  ----LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
                 IEVDGGL P+   +   AGAN IVAGS+VF AP  A  I+ +R S 
Sbjct: 168 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSK 219

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} Length = 221

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 90.7 bits (224), Expect = 2e-24
 Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
           +  G+++KP T V+++ P+++  N +  VLVMTVEPGFGGQ FM +MM KV  LR +Y +
Sbjct: 112 LWCGISIKPKTDVQKLVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKN 170

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
           L+I+VDGGL   T   +AS GAN IVAG+S+F A +P +VI  MR SV+
Sbjct: 171 LNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQ 219

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Length = 217

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 87.0 bits (215), Expect = 4e-23
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRS----LRN 56
           M+ GV + PGT    + PL++    V+ VL+MTV PGFGGQ F+PE ++KV +       
Sbjct: 108 MKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDE 164

Query: 57  RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
           +  S DIEVDGG+   TI     AGAN  VAGS +F A +    +  +R ++
Sbjct: 165 KGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 216

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 84.5 bits (208), Expect = 4e-22
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 3/109 (2%)

Query: 1   MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
               + L    + E+     + A   ++V   + +    G  +    +  ++ L      
Sbjct: 105 GDVQIELTGYWTWEQAQQWRD-AGIGQVVYHRSRDAQAAGVAWGEADITAIKRLS--DMG 161

Query: 61  LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
             + V GGL    +        +  +AG S+  A  P       ++S+ 
Sbjct: 162 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIA 210

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.2 bits (103), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 24  NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP--STIAEAASAG 81
              +  + +  E    G        +++  +R+R       +  G+G       +A  AG
Sbjct: 119 PLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG 178

Query: 82  ANCIVAGSSVFGAPEPAHVISLMRKS 107
           A+ I+ G +++ AP P      +   
Sbjct: 179 ADYIIVGRAIYNAPNPREAAKAIYDE 204

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 212

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 28  MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPST-IAEAASAGANCIV 86
            +  M V+ G           +++  LR         +  G+G            A+ I+
Sbjct: 131 EIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAII 190

Query: 87  AGSSVFGAPEPAHVISLMRKSV 108
            G S++ A  PA   + + +S+
Sbjct: 191 VGRSIYLADNPAAAAAGIIESI 212

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} Length = 237

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 28/83 (33%)

Query: 27  EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIV 86
           E  L   V      +     +     ++       +   +  +  +T A A   G++ IV
Sbjct: 153 ESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIV 212

Query: 87  AGSSVFGAPEPAHVISLMRKSVE 109
            G S+  A +P      +R   E
Sbjct: 213 VGRSITKAEDPVKAYKAVRLEWE 235

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 170

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (81), Expect = 4e-04
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 44  MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95
             E+ D  R +++  P++ +EV GG+    ++       + I +        
Sbjct: 109 PEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEV 160

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 72  STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
            T  +A SAG + +V G  V  + +PA  +  +  S++
Sbjct: 194 MTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 231

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	115
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	100.0
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	100.0
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	99.98
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	99.97
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	99.97
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	99.69
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	99.68
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	99.58
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.88
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	98.88
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	98.83
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	98.8
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.74
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.74
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	98.53
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	98.47
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	98.45
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.42
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.26
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	98.24
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	98.19
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	98.15
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	98.15
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	98.13
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	98.1
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	98.08
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	98.02
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	97.89
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	97.66
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	97.66
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.56
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.52
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.5
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	97.47
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	97.47
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.43
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.34
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	97.33
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.27
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.22
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	97.21
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.19
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	97.13
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	97.01
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.0
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	96.92
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	96.87
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	96.85
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	96.82
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	96.81
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.77
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	96.68
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	96.67
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.66
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	96.65
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	96.63
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	96.51
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	96.46
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	96.32
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	96.27
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	96.26
d2ffca1	332	Orotidine 5'-monophosphate decarboxylase (OMP deca	96.16
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	96.03
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	95.89
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	95.82
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	95.75
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	95.71
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	95.58
d2q8za1	323	Protozoan orotidine monophosphate decarboxylase {P	95.51
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	95.41
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	95.37
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	95.33
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	95.25
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	95.22
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	95.22
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	95.16
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	95.1
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	95.04
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	95.02
d2fdsa1	324	Protozoan orotidine monophosphate decarboxylase {P	94.99
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	94.89
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	94.76
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	94.65
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	94.58
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	94.45
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	94.42
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	94.3
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	94.12
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	93.94
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	93.72
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	93.72
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	93.71
d7reqb2	163	Methylmalonyl-CoA mutase beta subunit, C-terminal	93.71
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	93.57
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	93.47
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	93.37
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	93.31
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	93.3
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	93.12
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	93.06
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	92.52
d2i14a1	279	Nicotinate-nucleotide pyrophosphorylase PF1904 {Py	92.5
d3bula2	156	Methionine synthase, C-terminal domain {Escherichi	92.5
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	92.45
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	92.42
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	92.39
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	92.34
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	91.65
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	91.51
d1ytda1	270	Nicotinate phosphoribosyltransferase Ta1145 {Therm	91.32
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	91.19
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	91.08
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	91.07
d1h7na_	340	5-aminolaevulinate dehydratase, ALAD (porphobilino	90.9
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	90.56
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	89.89
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	89.13
d1k68a_	140	Response regulator for cyanobacterial phytochrome	88.33
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	88.19
d2z06a1	252	Hypothetical protein TTHA0625 {Thermus thermophilu	88.12
d1pv8a_	320	5-aminolaevulinate dehydratase, ALAD (porphobilino	88.03
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	88.02
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	87.93
d5ruba1	320	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	87.76
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	87.58
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	86.91
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	86.9
d1t70a_	255	Putative phosphatase DR1281 {Deinococcus radiodura	86.77
d1k66a_	149	Response regulator for cyanobacterial phytochrome	86.73
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	86.41
d1l6sa_	323	5-aminolaevulinate dehydratase, ALAD (porphobilino	86.28
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	85.96
d2f7fa1	345	Putative nicotinate phosphoribosyltransferase EF26	85.91
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	85.82
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	85.46
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	85.32
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	85.13
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	84.8
d1s8na_	190	Probable two-component system transcriptional regu	84.62
d1xrsb1	160	D-lysine 5,6-aminomutase beta subunit KamE, C-term	83.88
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	83.44
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	83.39
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	83.14
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	82.66
d2d69a1	291	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	82.43
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	81.84
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	81.61
d1t71a_	281	Hypothetical protein MPN349 {Mycoplasma pneumoniae	81.53
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	81.17
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	81.16
d1eo1a_	124	Hypothetical protein MTH1175 {Archaeon Methanobact	81.12
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	80.32

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=4.8e-34  Score=209.25  Aligned_cols=112  Identities=81%  Similarity=1.285  Sum_probs=106.2

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +++|||+||+||++.+++++...+.+|+|++|+|+|||+||+|.+.+++|++++|+.+++++|+||||||.+|++.+.++
T Consensus       109 ~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~~~i~~l~~a  188 (220)
T d1h1ya_         109 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASA  188 (220)
T ss_dssp             CEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHH
T ss_pred             CCcceeeccccchhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEEEEecCCHHHHHHHHHC
Confidence            58999999999999999998655678999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      |||.+|+||+||+++|+.+++++||+.+++++
T Consensus       189 Gad~~V~GS~if~~~d~~~~i~~lr~~~~~a~  220 (220)
T d1h1ya_         189 GANCIVAGSSIFGAAEPGEVISALRKSVEGSQ  220 (220)
T ss_dssp             TCCEEEESHHHHTSSCHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEECHHHHCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998764

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.4e-33  Score=205.56  Aligned_cols=109  Identities=51%  Similarity=0.826  Sum_probs=103.6

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +++|||+||+||++.++++++. ..+|+|++|+|+|||+||+|.+.+++|++++|+.++++.|+||||||.+|++.+.++
T Consensus       112 ~~~Gial~p~t~~~~~~~~l~~-~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~a  190 (221)
T d1tqxa_         112 LWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASH  190 (221)
T ss_dssp             CEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHH
T ss_pred             CeEEEeeccccccccchhhccc-ccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHc
Confidence            5799999999999999999932 359999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      |||.+|+||+||+++||++++++||+.+++
T Consensus       191 Gad~iV~GS~if~~~d~~~~i~~Lr~~i~k  220 (221)
T d1tqxa_         191 GANIIVAGTSIFNAEDPKYVIDTMRVSVQK  220 (221)
T ss_dssp             TCCEEEESHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEChHHHCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999998875

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.98  E-value=7.1e-33  Score=204.39  Aligned_cols=104  Identities=43%  Similarity=0.741  Sum_probs=98.6

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~   76 (115)
                      +|+||||||+||++.+++|+   +.+|+|++|+|+|||+||+|.+.+++|+++++++    ++++.|+||||||.+|++.
T Consensus       119 ~k~Gialnp~T~~~~l~~~l---~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~  195 (230)
T d1rpxa_         119 AKAGVVLNPGTPLTAIEYVL---DAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYK  195 (230)
T ss_dssp             SEEEEEECTTCCGGGGTTTT---TTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHH---hhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHH
Confidence            58999999999999999999   9999999999999999999999999999998765    5689999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      +.++|||.+|+||+||+++|+++++++||+.
T Consensus       196 l~~~Gad~~V~GS~if~~~d~~~~i~~lk~~  226 (230)
T d1rpxa_         196 VIEAGANALVAGSAVFGAPDYAEAIKGIKTS  226 (230)
T ss_dssp             HHHHTCCEEEESHHHHTSSCHHHHHHHHHTC
T ss_pred             HHHcCCCEEEEChHHHCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999998853

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.97  E-value=4.6e-32  Score=198.34  Aligned_cols=105  Identities=44%  Similarity=0.745  Sum_probs=100.3

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~   76 (115)
                      +++||||||+||++.+++|+   +.+|+|++|+|+|||+||+|.+..++|+++++++    +++++|++|||||.+|++.
T Consensus       108 ~~~Gial~p~T~~~~~~~~l---~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn~~~i~~  184 (217)
T d2flia1         108 MKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRA  184 (217)
T ss_dssp             SEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHH
T ss_pred             CeEEEEecCCcchhHHHhHH---hhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHH
Confidence            57999999999999999999   9999999999999999999999999999999864    5689999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~  108 (115)
                      +.++|||.+|+||+||+++|+++++++||+.+
T Consensus       185 l~~aGad~~V~Gsaif~~~d~~~~i~~lr~~i  216 (217)
T d2flia1         185 CYEAGANVFVAGSYLFKASDLVSQVQTLRTAL  216 (217)
T ss_dssp             HHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHCCCCEEEEchHHhCCCCHHHHHHHHHHhh
Confidence            99999999999999999999999999999875

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.97  E-value=3.1e-32  Score=199.74  Aligned_cols=103  Identities=43%  Similarity=0.704  Sum_probs=94.3

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHH
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAE   76 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~   76 (115)
                      +++||||||+|+++.+++|+   +.+|+|++|+|+|||+||+|.+.+++|+++++++    ++++.|+||||||.+|++.
T Consensus       111 ~~~Gial~p~T~~~~l~~~l---~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~  187 (221)
T d1tqja_         111 KKAGAVLNPSTPLDFLEYVL---PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQ  187 (221)
T ss_dssp             CEEEEEECTTCCGGGGTTTG---GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHH
T ss_pred             CCEEEEecCCCcHHHHHHHH---hhhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcCHHHHHH
Confidence            57999999999999999999   9999999999999999999999999999998765    5689999999999999999


Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      +.++|||.+|+||+||+++|+++++++||+
T Consensus       188 l~~~Gad~~V~GS~if~~~d~~~~i~~lr~  217 (221)
T d1tqja_         188 VLEAGANAIVAGSAVFNAPNYAEAIAGVRN  217 (221)
T ss_dssp             HHHHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred             HHHcCCCEEEEChHHhCCCCHHHHHHHHHh
Confidence            999999999999999999999999999985

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.9e-17  Score=115.36  Aligned_cols=105  Identities=14%  Similarity=0.221  Sum_probs=92.1

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEE-EEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMV-LVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~v-lvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      +.++.+.+.++.+...++..  ..+|++ +.|+..+|+.+|.+.+..++++++.+..  ++++.++||++.+|++++.++
T Consensus       106 ~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~--~~~i~~~gGi~~~~~~~~~~~  181 (213)
T d1q6oa_         106 DVQIELTGYWTWEQAQQWRD--AGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDM--GFKVTVTGGLALEDLPLFKGI  181 (213)
T ss_dssp             EEEEEECSCCCHHHHHHHHH--TTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHT--TCEEEEESSCCGGGGGGGTTS
T ss_pred             ceecccCCCCCHHHHHHHHH--hHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhcc--CceEecCCCcCcCCHHHHHHc
Confidence            57888899999888777773  345555 5578899999999999999999888764  689999999999999999999


Q ss_pred             CCCEEEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           81 GANCIVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        81 Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      |||++|+||+||+++||.++++++++.+++
T Consensus       182 Gad~iVVGr~I~~a~dp~~a~~~~~~~i~~  211 (213)
T d1q6oa_         182 PIHVFIAGRSIRDAASPVEAARQFKRSIAE  211 (213)
T ss_dssp             CCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEChhhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=99.68  E-value=9.3e-17  Score=114.88  Aligned_cols=103  Identities=17%  Similarity=0.150  Sum_probs=85.7

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      ..+.++..+.....-   .++||+.+.++.|..+.+...+..++.++++.+.. ++|+.+.||||.+|+.++.++|++++
T Consensus       103 g~s~h~~~e~~~a~~---~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~-~~Pv~AiGGI~~~ni~~~~~~Ga~gv  178 (206)
T d1xi3a_         103 GASVYSLEEALEAEK---KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-KIPVVAIGGINKDNAREVLKTGVDGI  178 (206)
T ss_dssp             EEEESSHHHHHHHHH---HTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-SSCEEEESSCCTTTHHHHHTTTCSEE
T ss_pred             ccccCCHHHHHHHHh---cCCCEEEeccccccccccccccccHHHHHHHHHhc-CCCEEEECCCCHHHHHHHHHhCCCEE
Confidence            345555555555544   68999999999998887777778899999998874 79999999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                      +++|+||+++||+++++++++++++++
T Consensus       179 Avis~I~~~~dp~~~~~~l~~~~~~~~  205 (206)
T d1xi3a_         179 AVISAVMGAEDVRKATEELRKIVEEVL  205 (206)
T ss_dssp             EESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             EEhHHHHCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998864

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=3.2e-15  Score=108.44  Aligned_cols=104  Identities=16%  Similarity=0.137  Sum_probs=84.5

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      .+.++..+.....-   .++||+.+.++.|..+..... +...+.++.+++...++|+.+.||||++|+.++.++|+|++
T Consensus       120 ~S~h~~~e~~~a~~---~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI~~~ni~~l~~~Ga~gi  196 (226)
T d2tpsa_         120 VSAHTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGV  196 (226)
T ss_dssp             EEECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCCTTTSHHHHHTTCSEE
T ss_pred             eeccchHHHHHHHh---CcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCCEE
Confidence            44556555555555   689999999999887655432 34455566666555689999999999999999999999999


Q ss_pred             EEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625           86 VAGSSVFGAPEPAHVISLMRKSVEDAQK  113 (115)
Q Consensus        86 v~Gsaif~~~d~~~~~~~l~~~~~~~~~  113 (115)
                      ++.|+||+++||.+++++|++.++.+++
T Consensus       197 Avis~I~~a~dp~~~~~~~~~~~~~~k~  224 (226)
T d2tpsa_         197 SMISAISQAEDPESAARKFREEIQTYKT  224 (226)
T ss_dssp             EESHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             EEhHHhhcCCCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999998765

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.88  E-value=3.6e-09  Score=73.90  Aligned_cols=96  Identities=11%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC--CCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF--GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG   81 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~--~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G   81 (115)
                      +..++.|+.+.+...-   .++|++.+....-+.  .+.......++.+.++++.. ++|+.++||| |.+++..+.++|
T Consensus       122 v~~~~~t~~~a~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~iPVia~GGI~t~~d~~~~~~~G  197 (222)
T d1y0ea_         122 IMADIATVEEAKNAAR---LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLG  197 (222)
T ss_dssp             EEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTT
T ss_pred             EeecCCCHHHHHHHHH---cCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHcC
Confidence            3445667667666655   789998643332211  12223344567777777664 7999999999 699999999999


Q ss_pred             CCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           82 ANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        82 ad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      ||.+++||+|.   +|.+.++++-+.
T Consensus       198 AdgV~iGsAi~---rp~~~~~~f~~~  220 (222)
T d1y0ea_         198 VHCSVVGGAIT---RPKEITKRFVQV  220 (222)
T ss_dssp             CSEEEECHHHH---CHHHHHHHHHHT
T ss_pred             CCEEEEchhhc---CHHHHHHHHHHH
Confidence            99999999997   477777766543

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=98.88  E-value=5.8e-09  Score=74.72  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=81.8

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHH----HHHHhhCCCCcEEEEcCCChhhHH-HHHH
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKV----RSLRNRYPSLDIEVDGGLGPSTIA-EAAS   79 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki----~~l~~~~~~~~i~~dGGI~~~ni~-~l~~   79 (115)
                      ..++.+++.+..+...   ...|+|...++.+..+|+...+...+++    +.+++..+++|+...|||+.+|.. .+.+
T Consensus       117 ~ivcvge~~~~~~~~~---~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~  193 (226)
T d1w0ma_         117 VVVCAPDPRTSLAAAA---LGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALR  193 (226)
T ss_dssp             EEEEESSHHHHHHHHH---TCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH
T ss_pred             EEEecCchHHhhhhhc---cccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhc
Confidence            3566777777777666   7789998888888778877655444443    444555678999999999987765 5788


Q ss_pred             cCCCEEEEcccccCCCCHHHHHHHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        80 ~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                      .|+|++.+||++++++||...+.+|.+.+.+.
T Consensus       194 ~g~dGvLVGsA~l~a~d~~~~i~~l~~~~~~~  225 (226)
T d1w0ma_         194 LGTRGVLLASAAVKAKDPYAKIVELAKPLSEL  225 (226)
T ss_dssp             TTCSEEEECHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEechheecCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888877664

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=4.2e-09  Score=73.07  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      .+-..+..+..+.+-   .++|.||+....|.        +.-+.++.++..++++.+++.||||++|+.++..+|+|++
T Consensus        83 ~VEv~s~~q~~~a~~---~~~diImLDN~sp~--------~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~I  151 (169)
T d1qpoa1          83 EVEVDSLEQLDAVLP---EKPELILLDNFAVW--------QTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYL  151 (169)
T ss_dssp             EEEESSHHHHHHHGG---GCCSEEEEETCCHH--------HHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEE
T ss_pred             EEEeccHHHhhhhhh---cCCcEEEecCcChH--------hHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEE
Confidence            334444445555544   68999998755552        2333355666677889999999999999999999999999


Q ss_pred             EEcccccCCC
Q 033625           86 VAGSSVFGAP   95 (115)
Q Consensus        86 v~Gsaif~~~   95 (115)
                      ++|+..++++
T Consensus       152 S~galt~sa~  161 (169)
T d1qpoa1         152 AVGALTHSVR  161 (169)
T ss_dssp             ECGGGTSSBC
T ss_pred             ECCccccCCC
Confidence            9998766543

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=2.6e-09  Score=74.25  Aligned_cols=79  Identities=13%  Similarity=0.271  Sum_probs=59.4

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHH-HHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCC
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGAN   83 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~k-i~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad   83 (115)
                      +.+-.+|..+..+.+-   .++|.|++....|         +.+.. ++.++..++++.+++.||||++|+..+.++|+|
T Consensus        81 I~VEv~~~~e~~~a~~---~g~d~i~LDn~~p---------e~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD  148 (170)
T d1o4ua1          81 IEVEVENLEDALRAVE---AGADIVMLDNLSP---------EEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVD  148 (170)
T ss_dssp             EEEEESSHHHHHHHHH---TTCSEEEEESCCH---------HHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCC
T ss_pred             EEEEeCcHHHHHHHHh---cCccEEEEcCcCh---------hhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCC
Confidence            4555666555555555   6899999874444         44444 345566778899999999999999999999999


Q ss_pred             EEEEcccccCCC
Q 033625           84 CIVAGSSVFGAP   95 (115)
Q Consensus        84 ~iv~Gsaif~~~   95 (115)
                      ++++|+..++++
T Consensus       149 ~Is~g~lt~~a~  160 (170)
T d1o4ua1         149 VISSSRLTLQEV  160 (170)
T ss_dssp             EEEEGGGTSSCC
T ss_pred             EEEcCccccCCC
Confidence            999998776544

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.74  E-value=1.7e-08  Score=70.91  Aligned_cols=92  Identities=11%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEE
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIV   86 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv   86 (115)
                      +..|+.+.....-   .++|+|.+.....+..+.......+ .+.+..+. .++|+.++||| |.+++..+.++|||.++
T Consensus       136 ~v~t~~~a~~a~~---~Gad~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~ipvia~GGI~t~~d~~~al~~GAd~V~  210 (230)
T d1yxya1         136 DISTFDEGLVAHQ---AGIDFVGTTLSGYTPYSRQEAGPDV-ALIEALCK-AGIAVIAEGKIHSPEEAKKINDLGVAGIV  210 (230)
T ss_dssp             ECSSHHHHHHHHH---TTCSEEECTTTTSSTTSCCSSSCCH-HHHHHHHH-TTCCEEEESCCCSHHHHHHHHTTCCSEEE
T ss_pred             CCCCHHHHHHHHh---cCCCEEEeecccccccccccchHHH-HHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            3445544444444   6899986543322222222222222 23333333 47999999999 79999999999999999


Q ss_pred             EcccccCCCCHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      +||+|++   |++.+++|.+.
T Consensus       211 vGsAi~~---p~~i~~~~~~~  228 (230)
T d1yxya1         211 VGGAITR---PKEIAERFIEA  228 (230)
T ss_dssp             ECHHHHC---HHHHHHHHHHH
T ss_pred             EChhhcC---HHHHHHHHHHH
Confidence            9999984   66666666554

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.74  E-value=1e-09  Score=77.45  Aligned_cols=62  Identities=23%  Similarity=0.502  Sum_probs=49.8

Q ss_pred             HHHHHHHHhhC-CCCcEEEEc-CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           48 MDKVRSLRNRY-PSLDIEVDG-GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        48 ~~ki~~l~~~~-~~~~i~~dG-GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      .+.++++|+.. +++.+.+.| |....+..+..++|||++|+|++|++++||.++++++++.++
T Consensus       143 ~~~~~~~r~~~~~~~~i~~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~aa~~i~~~ik  206 (206)
T d2czda1         143 PERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR  206 (206)
T ss_dssp             THHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             chhhhhhhhhhcccceEECCCccccCCCHHHHHHhCCCEEEEChhhccCCCHHHHHHHHHHHhC
Confidence            34456666544 356677766 666779999999999999999999999999999999998764

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=1.8e-07  Score=66.27  Aligned_cols=61  Identities=21%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             CCCCcccchhH---HHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHH
Q 033625           37 GFGGQKFMPEM---MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        37 G~~gq~~~~~~---~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~   98 (115)
                      |++-.++.|..   ...++.++.-+|++++...||||.+|+.++.++|+..+.+||.|++. |+.
T Consensus       123 G~~~lK~fPa~~~G~~~lk~l~~p~p~i~~iptGGI~~~n~~~~l~aga~avg~Gs~l~~~-~~~  186 (202)
T d1wa3a1         123 GHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKG-TPD  186 (202)
T ss_dssp             TCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHCS-CHH
T ss_pred             CCCEEEecchhhcCHHHHHHHhCcccCCcEEeeCCCCHHHHHHHHHCCCeEEEEchhhcCC-CHH
Confidence            44444444332   24577777778899999999999999999999999999999999974 443

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.47  E-value=2.8e-07  Score=63.53  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ..+..+..+...   .++|.|++-...|         +.+.+.  ++..++++.+++.||||++|+..+.++|+|++++|
T Consensus        86 v~~~~~~~~a~~---~g~diImLDN~~p---------e~~~~a--v~~i~~~~~lEaSGgI~~~ni~~ya~~GVD~IS~g  151 (167)
T d1qapa1          86 VENLDELDDALK---AGADIIMLDNFNT---------DQMREA--VKRVNGQARLEVSGNVTAETLREFAETGVDFISVG  151 (167)
T ss_dssp             ESSHHHHHHHHH---TTCSEEEESSCCH---------HHHHHH--HHTTCTTCCEEECCCSCHHHHHHHHHTTCSEEECS
T ss_pred             cCcHHHHHHHHh---cCCcEEEecCCCH---------HHHHHH--HHhcCCceEEEEeCCCCHHHHHHHHHcCCCEEECC
Confidence            334334444444   6899999754443         333321  23345679999999999999999999999999998


Q ss_pred             ccccC
Q 033625           89 SSVFG   93 (115)
Q Consensus        89 saif~   93 (115)
                      +...+
T Consensus       152 alt~~  156 (167)
T d1qapa1         152 ALTKH  156 (167)
T ss_dssp             HHHHE
T ss_pred             cccCC
Confidence            76543

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.45  E-value=1.3e-06  Score=63.84  Aligned_cols=102  Identities=15%  Similarity=0.297  Sum_probs=74.8

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc-ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ-KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGAN   83 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq-~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad   83 (115)
                      -+.|.|+.+.++.+.+.+.  .+|-+++..+-++.+ .+..+..+.++++|+.. +.|+.+=-|| +++.++.+.+.|||
T Consensus       148 lvaPtt~~~Ri~~i~~~a~--gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaD  224 (261)
T d1rd5a_         148 LTTPAIPEDRMKEITKASE--GFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGAD  224 (261)
T ss_dssp             EECTTSCHHHHHHHHHHCC--SCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             EeccCCchhHHHHHHhcCc--chhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCC
Confidence            3579999999999885433  444444444333323 34566667788888885 8999999999 57999999999999


Q ss_pred             EEEEcccccC----CCCHHHHHHHHHHHHHH
Q 033625           84 CIVAGSSVFG----APEPAHVISLMRKSVED  110 (115)
Q Consensus        84 ~iv~Gsaif~----~~d~~~~~~~l~~~~~~  110 (115)
                      ++|+||++.+    ..+.++.++.+.+.+++
T Consensus       225 GvIVGSaiv~~i~~~~~~~~~~~~~~~~~~~  255 (261)
T d1rd5a_         225 GVIIGSAMVRQLGEAASPKQGLRRLEEYARG  255 (261)
T ss_dssp             EEEECHHHHHHHHSSSSHHHHHHHHHHHHHH
T ss_pred             EEEECHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999863    44666666666666554

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.42  E-value=4.4e-08  Score=69.21  Aligned_cols=76  Identities=20%  Similarity=0.200  Sum_probs=54.0

Q ss_pred             EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHH-HHcCCCEEEEcccccCCCCHHHHHHHHHHH
Q 033625           32 MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAGSSVFGAPEPAHVISLMRKS  107 (115)
Q Consensus        32 m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~  107 (115)
                      |+++.|..|+-......+.++++|+..++-.+.+.+||+.++-..- ...+||++|+|++|++++||.++++++++.
T Consensus       135 ~~~~~g~~g~v~~~~~~~~i~~ir~~~~~~~~~vtpGI~~~g~~~~d~~~~ad~iIvGR~I~~a~dP~~aa~~i~~~  211 (212)
T d1km4a_         135 MGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIES  211 (212)
T ss_dssp             HHHHHTCCEEECCTTCHHHHHHHHHHHCSSSEEEECCBSTTSBCHHHHTTTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccCHHHHhhhhhccCCceeEEcCccccCCCCHHHHHhhCCEEEECchhccCCCHHHHHHHHHHh
Confidence            3445555555544444556677776655556779999987643322 225899999999999999999999999875

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=1e-06  Score=63.03  Aligned_cols=50  Identities=30%  Similarity=0.330  Sum_probs=43.5

Q ss_pred             CCcEEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           60 SLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        60 ~~~i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      +-.+.+..||+++           |..+..+.|||++|+|++|++++||.++++++++.++
T Consensus       175 ~~~~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~dP~~aa~~i~~~ie  235 (237)
T d1dbta_         175 PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWE  235 (237)
T ss_dssp             TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred             cceeEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHHc
Confidence            3446788998776           4678889999999999999999999999999998875

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.24  E-value=3.4e-06  Score=61.76  Aligned_cols=101  Identities=14%  Similarity=0.213  Sum_probs=73.0

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcc--cchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQK--FMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~--~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Ga   82 (115)
                      -+.|.|+.+.++.+.+.+++.  |-++ ..+|.+|..  +..+..+.++++|+.. ++|+.+=.||+. +.+....+.||
T Consensus       153 lvaPtt~~~Ri~~i~~~a~gF--iY~v-s~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~A  228 (267)
T d1qopa_         153 ICPPNADDDLLRQVASYGRGY--TYLL-SRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGA  228 (267)
T ss_dssp             EECTTCCHHHHHHHHHHCCSC--EEEE-SSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTC
T ss_pred             EecccccHHHHHHHHhhCchh--hhhh-cccccCCcccccchhHHHHHHHHhhhc-cCCceeecccCCHHHHHHHHhcCC
Confidence            357999999999988654443  3333 344666543  3445566788888764 899999999986 77888889999


Q ss_pred             CEEEEcccccC-----CCCHHHHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFG-----APEPAHVISLMRKSVED  110 (115)
Q Consensus        83 d~iv~Gsaif~-----~~d~~~~~~~l~~~~~~  110 (115)
                      |++|+||+|.+     .+++++.++++++.+++
T Consensus       229 DGvIVGSAivk~i~~~~~~~~~~~~~i~~~v~~  261 (267)
T d1qopa_         229 AGAISGSAIVKIIEKNLASPKQMLAELRSFVSA  261 (267)
T ss_dssp             SEEEECHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CEEEECHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            99999999875     24667777777766554

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=9.6e-07  Score=62.83  Aligned_cols=50  Identities=28%  Similarity=0.381  Sum_probs=42.9

Q ss_pred             CCcEEEEcCCChh-----------hHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           60 SLDIEVDGGLGPS-----------TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        60 ~~~i~~dGGI~~~-----------ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      .-.+.+.+||+++           +..+..++|||++|+|++|++++||.++++++++.++
T Consensus       171 ~~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a~dP~~aa~~i~~~ik  231 (231)
T d1eixa_         171 QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ  231 (231)
T ss_dssp             SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHTC
T ss_pred             CccceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhC
Confidence            3457889999876           4667889999999999999999999999999988653

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=98.15  E-value=1.1e-05  Score=56.98  Aligned_cols=61  Identities=16%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           46 EMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        46 ~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      .....++.+++..+++|+...|||+. +....+.+.|+|++.+||++++++||.+.+++|-+
T Consensus       161 ~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~~  222 (224)
T d1hg3a_         161 VITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVS  222 (224)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHHHHHHHHh
Confidence            33344556666677899999999985 66667899999999999999999999999888754

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.15  E-value=1.3e-05  Score=58.74  Aligned_cols=107  Identities=14%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             EEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeC------------------------CCCCcccchhHHHHHHHHHhhC
Q 033625            4 GVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEP------------------------GFGGQKFMPEMMDKVRSLRNRY   58 (115)
Q Consensus         4 Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~p------------------------G~~gq~~~~~~~~ki~~l~~~~   58 (115)
                      .+-+.|..+ ...+...+.. .++|.+.+....+                        |++|....+.+++-++++++..
T Consensus       175 ~vKl~~~~~~~~~i~~~~~~-~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~  253 (312)
T d1gtea2         175 FAKLTPNVTDIVSIARAAKE-GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL  253 (312)
T ss_dssp             EEEECSCSSCHHHHHHHHHH-HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHS
T ss_pred             eecccccchhHHHHHHHHHH-hcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHc
Confidence            444666533 3444444433 5788887654321                        2344455577788899999888


Q ss_pred             CCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccccc-CCCCH-HHHHHHHHHHHHHH
Q 033625           59 PSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVF-GAPEP-AHVISLMRKSVEDA  111 (115)
Q Consensus        59 ~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif-~~~d~-~~~~~~l~~~~~~~  111 (115)
                      +++||.+.||| +.+.+.+.+.+|||.+=++|+++ +.++. .+-.+.|++.+++.
T Consensus       254 ~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~~  309 (312)
T d1gtea2         254 PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLK  309 (312)
T ss_dssp             TTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHHHHHHHHHHc
Confidence            88999999999 89999999999999999999965 44553 56666677776653

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.13  E-value=2.3e-05  Score=56.57  Aligned_cols=98  Identities=16%  Similarity=0.197  Sum_probs=72.4

Q ss_pred             EEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHH-----------------------------
Q 033625            5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR-----------------------------   55 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~-----------------------------   55 (115)
                      .+..+.+--+++..+.   .....|    ..-||.|-....+.....+++.                             
T Consensus       108 fVcg~r~Lgealrri~---EgAamI----rtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~  180 (254)
T d1znna1         108 FVCGCRDLGEAARRIA---EGASML----RTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLR  180 (254)
T ss_dssp             EEEEESSHHHHHHHHH---TTCSEE----EECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHH
T ss_pred             eeCCCCccchhHHHHH---HHHHHH----HhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHH
Confidence            4455666678888888   556655    5667776655544443333331                             


Q ss_pred             ---hh-CCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           56 ---NR-YPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        56 ---~~-~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                         +. ...+|+.+|||| |+.......+.|+|.+-+||+||+++||...++.+.....
T Consensus       181 ~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A~~~Avt  239 (254)
T d1znna1         181 EIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATT  239 (254)
T ss_dssp             HHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHH
Confidence               11 135888999999 6888999999999999999999999999999999987654

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.10  E-value=1.8e-06  Score=62.66  Aligned_cols=84  Identities=19%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Ga   82 (115)
                      -+.|+|+.+.++.+.+.+.+  +|-++ ..+|.+|.  .+.....+.++++|+. .+.|+.+=-|| |++.++.+.+.||
T Consensus       139 lvaPtt~~~ri~~i~~~s~g--FiY~v-s~~GvTG~~~~~~~~~~~~v~~vk~~-t~~Pv~vGFGI~~~e~v~~~~~~~A  214 (248)
T d1geqa_         139 LAAPNTPDERLKVIDDMTTG--FVYLV-SLYGTTGAREEIPKTAYDLLRRAKRI-CRNKVAVGFGVSKREHVVSLLKEGA  214 (248)
T ss_dssp             EECTTCCHHHHHHHHHHCSS--EEEEE-CCC-------CCCHHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTC
T ss_pred             EecccchhHHHHHHHhcCCC--eEEEE-ecccccccchhhhhhHHHHHHHHhhh-cccceeeecccCCHHHHHHHHhcCC
Confidence            46799999999888744333  33332 34565553  3455667778888887 47999999999 6789999989999


Q ss_pred             CEEEEcccccC
Q 033625           83 NCIVAGSSVFG   93 (115)
Q Consensus        83 d~iv~Gsaif~   93 (115)
                      |++|+||++.+
T Consensus       215 DGvIVGSaiv~  225 (248)
T d1geqa_         215 NGVVVGSALVK  225 (248)
T ss_dssp             SEEEECHHHHH
T ss_pred             CEEEECHHHHH
Confidence            99999999874

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=98.08  E-value=1.4e-05  Score=56.69  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccC
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      ....++.++.-+|++++...|||+.+|+.+++++|+-.++.||.+|.
T Consensus       141 G~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~g~v~~~~Gs~l~~  187 (212)
T d1vhca_         141 GVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVE  187 (212)
T ss_dssp             HHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGC
T ss_pred             hHHHHHHHhccccCCeEEecCCCCHHHHHHHHhCCCEEEEEChhhCC
Confidence            34567888888899999999999999999999999999999999985

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.2e-05  Score=57.06  Aligned_cols=47  Identities=13%  Similarity=0.297  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           48 MDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        48 ~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      ...++.++.-+|++++...|||+.+|+.++.++|+..+++||.+|..
T Consensus       143 ~~~lkal~~p~p~~~~~ptGGV~~~n~~~yl~~g~v~~~~Gs~l~~~  189 (213)
T d1wbha1         143 VKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPA  189 (213)
T ss_dssp             HHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTSTTBSCEEEGGGSCH
T ss_pred             HHHHHHhcCcccCCceeeeCCCCHHHHHHHHhCCCEEEEEChhhCCh
Confidence            56688888888999999999999999999999999999999999964

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.89  E-value=8.7e-05  Score=53.49  Aligned_cols=81  Identities=17%  Similarity=0.244  Sum_probs=61.8

Q ss_pred             CCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      +...|+-+. .|.-+||... +..   ++.+++. +++|+.+|+|| +++......+.|+|.+-+.|+|+++.||..+++
T Consensus       148 Gc~~vMplg-sPIGsg~Gi~n~~~---l~~i~~~-~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A~dP~~mA~  222 (243)
T d1wv2a_         148 GCIAVMPLA-GLIGSGLGICNPYN---LRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAE  222 (243)
T ss_dssp             CCSEEEECS-SSTTCCCCCSCHHH---HHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHH
T ss_pred             Cceeeeecc-cccccccccccHHH---HHhcccc-CCcceEeecccCCHHHHHHHHHccCCEEEechHhhcCCCHHHHHH
Confidence            444443332 4655677654 333   4444544 68999999999 588999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 033625          103 LMRKSVED  110 (115)
Q Consensus       103 ~l~~~~~~  110 (115)
                      .++..++.
T Consensus       223 A~~~Av~a  230 (243)
T d1wv2a_         223 AMKHAIVA  230 (243)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887663

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=97.66  E-value=5.6e-05  Score=53.61  Aligned_cols=87  Identities=13%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEE-EEEe-------eeCCCCCcccchh----HHHHHHHHHhhCCCCcEEEEcCCChhh
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMV-LVMT-------VEPGFGGQKFMPE----MMDKVRSLRNRYPSLDIEVDGGLGPST   73 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~v-lvm~-------v~pG~~gq~~~~~----~~~ki~~l~~~~~~~~i~~dGGI~~~n   73 (115)
                      .+.|++..+.++.-.+  .++.++ ++++       ..-|+.-.++-|.    ....++.++.-+|++++...|||+.+|
T Consensus        93 ivsP~~~~~v~~~a~~--~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~~g~~~ikal~~p~p~~~fiptGGV~~~n  170 (216)
T d1mxsa_          93 VVTPGITEDILEAGVD--SEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNPAN  170 (216)
T ss_dssp             EECSSCCHHHHHHHHH--CSSCEECEECSHHHHHHHHTTTCCEEEETTHHHHTHHHHHHHHHTTTTTCEEEEBSSCCTTT
T ss_pred             EECCCCcHHHHHHHHh--cCCCccCCcCCHHHHHHHHHCCCCEEEeccccccccHHHHHHHhcccccCceeccCCCCHHH
Confidence            4567777666665442  233333 2221       1123444455443    334577777778899999999999999


Q ss_pred             HHHHHHcCCCEEEEcccccCC
Q 033625           74 IAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        74 i~~l~~~Gad~iv~Gsaif~~   94 (115)
                      +.++.++|+-..+.||.+|..
T Consensus       171 ~~~yl~~~~v~avggs~l~~~  191 (216)
T d1mxsa_         171 VRNYMALPNVMCVGTTWMLDS  191 (216)
T ss_dssp             HHHHHHSTTBCCEEECTTSCH
T ss_pred             HHHHHhcCCeEEEEccccCCH
Confidence            999999998888889999963

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=0.00012  Score=53.43  Aligned_cols=99  Identities=26%  Similarity=0.405  Sum_probs=67.2

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCc--ccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQ--KFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGA   82 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq--~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Ga   82 (115)
                      -+.|.|+.+.++.+.+.++  .+|-++++. |.+|.  .+.....+.++++|+. .++|+.+==||+. +.+..+  .+|
T Consensus       150 lvsPtT~~eRi~~i~~~s~--GFIY~Vs~~-GvTG~~~~~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~--~~A  223 (271)
T d1ujpa_         150 LLAPTSTDARIATVVRHAT--GFVYAVSVT-GVTGMRERLPEEVKDLVRRIKAR-TALPVAVGFGVSGKATAAQA--AVA  223 (271)
T ss_dssp             EECTTCCHHHHHHHHTTCC--SCEEEECC-------------CCHHHHHHHHTT-CCSCEEEESCCCSHHHHHHH--TTS
T ss_pred             ccCCCcchHHHHHHHHhCc--chhhhhccc-CccCccccchHHHHHHHHhhhcc-ccCCeEEeCCCCCHHHHHHh--CCC
Confidence            3679999999999995433  355544444 54554  3556667778888876 4899999889985 455543  599


Q ss_pred             CEEEEcccccC----CCCHHHHHHHHHHHHHH
Q 033625           83 NCIVAGSSVFG----APEPAHVISLMRKSVED  110 (115)
Q Consensus        83 d~iv~Gsaif~----~~d~~~~~~~l~~~~~~  110 (115)
                      |++|+||++.+    ..+..+.++++++.+++
T Consensus       224 DGvIVGSAiV~~i~e~~~~~~~~~~i~~~l~~  255 (271)
T d1ujpa_         224 DGVVVGSALVRALEEGRSLAPLLQEIRQGLQR  255 (271)
T ss_dssp             SEEEECHHHHHHHHTTCCHHHHHHHHHHHHBC
T ss_pred             CEEEEcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            99999999863    45777888888887764

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.56  E-value=0.00013  Score=52.19  Aligned_cols=81  Identities=17%  Similarity=0.296  Sum_probs=61.3

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.|.+  .++|.+.+.-......+...   -++.++++.+. ..+|+.+.||| +.+.+..+..+|+|-++++|
T Consensus        33 dP~~~a~~~~~--~gadei~ivDl~~~~~~~~~---~~~~i~~i~~~-~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s  106 (252)
T d1h5ya_          33 DPVEMAVRYEE--EGADEIAILDITAAPEGRAT---FIDSVKRVAEA-VSIPVLVGGGVRSLEDATTLFRAGADKVSVNT  106 (252)
T ss_dssp             CHHHHHHHHHH--TTCSCEEEEECCCCTTTHHH---HHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             CHHHHHHHHHH--CCCCEEEEEecccccccccc---HHHHHHHHHhh-cCCcceeecccchhhhhhhHhhcCCcEEEecc
Confidence            46777766652  57999988777776555443   33446666655 37999999999 56999999999999999999


Q ss_pred             cccCCCCH
Q 033625           90 SVFGAPEP   97 (115)
Q Consensus        90 aif~~~d~   97 (115)
                      ..|..++.
T Consensus       107 ~~~~~~~~  114 (252)
T d1h5ya_         107 AAVRNPQL  114 (252)
T ss_dssp             HHHHCTHH
T ss_pred             cccCCcch
Confidence            99876543

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=0.00018  Score=51.37  Aligned_cols=81  Identities=17%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChh-hHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPS-TIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~-ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.|.+  .++|.+.+.-......+..   ..++.++++++. ..+|+++.|||+.. .+..+..+|||-+++||
T Consensus        31 dP~~~a~~~~~--~g~dei~ivDld~~~~~~~---~~~~~i~~i~~~-~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs  104 (253)
T d1thfd_          31 DPVELGKFYSE--IGIDELVFLDITASVEKRK---TMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINT  104 (253)
T ss_dssp             CHHHHHHHHHH--TTCCEEEEEESSCSSSHHH---HHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             CHHHHHHHHHH--cCCCEEEEEeecccccCcc---cHHHHHHHHHhc-cCccceeecccccchhhhhHHhcCCCEEEECh
Confidence            47777777762  4799999877776655533   344556777665 37999999999855 88899999999999999


Q ss_pred             cccCCCCH
Q 033625           90 SVFGAPEP   97 (115)
Q Consensus        90 aif~~~d~   97 (115)
                      ..++.++.
T Consensus       105 ~~~~n~~~  112 (253)
T d1thfd_         105 AAVENPSL  112 (253)
T ss_dssp             HHHHCTHH
T ss_pred             HHhhChHH
Confidence            99976644

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=0.00014  Score=51.83  Aligned_cols=81  Identities=17%  Similarity=0.279  Sum_probs=61.6

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .|++..+.|-+  .++|.+.+.-......+...   -++.++++.+.. ..|++++|||+ .+++..+.+.||+-+++||
T Consensus        31 dP~~~a~~~~~--~g~dei~iiDl~~~~~~~~~---~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s  104 (251)
T d1ka9f_          31 DPVEAARAYDE--AGADELVFLDISATHEERAI---LLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNS  104 (251)
T ss_dssp             CHHHHHHHHHH--HTCSCEEEEECCSSTTCHHH---HHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred             CHHHHHHHHHH--cCCCEEEEEecccccccchh---HHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEEECc
Confidence            46676666652  47999998877776655442   344566676654 69999999997 5889999999999999999


Q ss_pred             cccCCCCH
Q 033625           90 SVFGAPEP   97 (115)
Q Consensus        90 aif~~~d~   97 (115)
                      ..+..++.
T Consensus       105 ~~~~n~~~  112 (251)
T d1ka9f_         105 AAVRRPEL  112 (251)
T ss_dssp             HHHHCTHH
T ss_pred             hhhhCHHH
Confidence            99876654

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.47  E-value=0.00032  Score=50.47  Aligned_cols=80  Identities=25%  Similarity=0.387  Sum_probs=62.0

Q ss_pred             CCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      +...|+-+...-| +||-. .++.   |+.+++. .++|+.||+|| ++....+..+.|+|.+.+.|+|.++.||...++
T Consensus       146 Gc~avMPlgsPIG-Sg~Gl~n~~~---l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~  220 (251)
T d1xm3a_         146 GVHAIMPGASPIG-SGQGILNPLN---LSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMAR  220 (251)
T ss_dssp             TCSCBEECSSSTT-CCCCCSCHHH---HHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHH
T ss_pred             CChhHHHhhhhhh-cCCCcCChHH---HHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEechhhhcCCCHHHHHH
Confidence            4555554444445 55554 3444   5666665 58999999999 588999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       221 A~~~Av~  227 (251)
T d1xm3a_         221 AMKLAVE  227 (251)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.47  E-value=9.4e-05  Score=54.05  Aligned_cols=75  Identities=19%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             CCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccc-cCCCCH-HHHHHHHHHHHHHHh
Q 033625           38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSV-FGAPEP-AHVISLMRKSVEDAQ  112 (115)
Q Consensus        38 ~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsai-f~~~d~-~~~~~~l~~~~~~~~  112 (115)
                      ++|....+.+++.+.++++..++.+|..-||| +.+.+-+...+||+.+=++|++ ++.+.. .+-.+.|.+.+++.+
T Consensus       220 lSG~~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~i~~~L~~~l~~~G  297 (312)
T d2b4ga1         220 LGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNKELQEIMTNKG  297 (312)
T ss_dssp             EEEGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHHHHHHHHHHHT
T ss_pred             cccccccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcCcHHHHHHHHHHHHHHHHcC
Confidence            45556667788889999888788889999999 6999999999999999999996 454554 566667887777654

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=0.00033  Score=49.90  Aligned_cols=87  Identities=21%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      .+.++.+.+  ..+.-++++.+.-.-+.+-+..+.+   +++++. .+.|+.+.||++ .+.+..+...|++.+++|+++
T Consensus       154 ~~~~~~~~~--~g~~eii~tdI~~dGt~~G~d~~ll---~~i~~~-~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal  227 (253)
T d1thfd_         154 RDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMI---RFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF  227 (253)
T ss_dssp             HHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHH---HHHGGG-CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred             HHHHHHHHh--ccCCEEEEEEecccCccCCcccccc---cccccc-ccceEEEecCCCCHHHHHHHHHCCCCEEEEchHH
Confidence            345555541  4689999999987556666655554   445544 478999999998 599999999999999999998


Q ss_pred             cCCC-CHHHHHHHHH
Q 033625           92 FGAP-EPAHVISLMR  105 (115)
Q Consensus        92 f~~~-d~~~~~~~l~  105 (115)
                      +... ++.+..+.++
T Consensus       228 ~~~~~~~~~~k~~l~  242 (253)
T d1thfd_         228 HFREIDVRELKEYLK  242 (253)
T ss_dssp             HTTCSCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHH
Confidence            6543 5555444333

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.34  E-value=0.00086  Score=47.76  Aligned_cols=83  Identities=22%  Similarity=0.282  Sum_probs=59.4

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      +.+.++.+. + .++.-++++.+.-.-+.+-+..+.++++   ++.. +.|+.+.||++ .+.+..+...|++.+++||+
T Consensus       155 ~~~~~~~~~-~-~g~~eii~tdI~~dG~~~G~d~~~~~~i---~~~~-~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~  228 (252)
T d1h5ya_         155 AVKWAKEVE-E-LGAGEILLTSIDRDGTGLGYDVELIRRV---ADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASL  228 (252)
T ss_dssp             HHHHHHHHH-H-HTCSEEEEEETTTTTTCSCCCHHHHHHH---HHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             HHHHHHHHH-h-cCCCEEEEEeecccCccCCcCHHHHHHH---HHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhH
Confidence            345555554 1 3688899998887555565655555544   4443 68999999998 59999999999999999999


Q ss_pred             cc-CCCCHHHH
Q 033625           91 VF-GAPEPAHV  100 (115)
Q Consensus        91 if-~~~d~~~~  100 (115)
                      +. +.-++.+.
T Consensus       229 l~~~~~~~~~l  239 (252)
T d1h5ya_         229 FHFRVLSIAQV  239 (252)
T ss_dssp             HHTTSSCHHHH
T ss_pred             HHcCCCCHHHH
Confidence            75 44455443

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.33  E-value=0.00021  Score=50.48  Aligned_cols=50  Identities=20%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             HHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHH
Q 033625           51 VRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVISL  103 (115)
Q Consensus        51 i~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~  103 (115)
                      +..+++...+.|+.+=+|| +++.++++. .+||++|+||+|.+  ++.+..+.
T Consensus       172 ~~~v~~~~~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~--~ie~~~~~  222 (229)
T d1viza_         172 VKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE--DFDRALKT  222 (229)
T ss_dssp             HHHHHHTCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH--CHHHHHTH
T ss_pred             HHHHHhhccCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHh--hHHHHHHH
Confidence            4444555568999999999 899999987 59999999999974  45444433

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=97.27  E-value=0.00028  Score=50.92  Aligned_cols=71  Identities=18%  Similarity=0.359  Sum_probs=52.6

Q ss_pred             CCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHHH
Q 033625           39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEP-AHVISLMRKSVED  110 (115)
Q Consensus        39 ~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~-~~~~~~l~~~~~~  110 (115)
                      +|....+..++.+.++++.. ++||...|||. .+.+.+...+|||.+-+||+++..+.. .+-.++|.+.+++
T Consensus       221 sG~~i~~~~l~~i~~i~~~~-~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~~~I~~~L~~~m~~  293 (311)
T d1ep3a_         221 SGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQ  293 (311)
T ss_dssp             ESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             CCCcccchhHHHHHHHhhhc-ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHHHHHHHHHHHHHHH
Confidence            44455577788899988765 79999999996 467777778999999999999876654 3444445554444

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=0.0011  Score=47.05  Aligned_cols=81  Identities=19%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      .+.++.+. + .++.-++++.+.-.-+.+-+..+.+   +++++. .+.|+.+.||++ .+.+..+.+.|++.+++|+++
T Consensus       154 ~~~~~~~~-~-~g~~eii~tdi~~dG~~~G~d~~l~---~~i~~~-~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al  227 (251)
T d1ka9f_         154 VEWAVKGV-E-LGAGEILLTSMDRDGTKEGYDLRLT---RMVAEA-VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVF  227 (251)
T ss_dssp             HHHHHHHH-H-HTCCEEEEEETTTTTTCSCCCHHHH---HHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred             HHHHHHHH-h-cCCCEEEEEeecccCccCCcchhHH---HHHHhh-cceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHH
Confidence            35555555 1 3689999999987555555554554   444444 368999999998 588999999999999999998


Q ss_pred             cCCC-CHHH
Q 033625           92 FGAP-EPAH   99 (115)
Q Consensus        92 f~~~-d~~~   99 (115)
                      +... ++.+
T Consensus       228 ~~g~~~~~~  236 (251)
T d1ka9f_         228 HFGEIPIPK  236 (251)
T ss_dssp             HTTSSCHHH
T ss_pred             HcCCCCHHH
Confidence            6543 4443

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=97.21  E-value=0.00057  Score=50.84  Aligned_cols=80  Identities=11%  Similarity=0.121  Sum_probs=60.3

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh------------hhHHHHH
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP------------STIAEAA   78 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~------------~ni~~l~   78 (115)
                      .|++..+.|-+  .++|.+.++-+..-..+.......++.|+++.+.. .+|+.+-|||+-            +.+..+.
T Consensus        49 dP~~~a~~~~~--~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll  125 (323)
T d1jvna1          49 KPVQLAQKYYQ--QGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYF  125 (323)
T ss_dssp             HHHHHHHHHHH--TTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred             CHHHHHHHHHH--CCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence            56777777662  58999999877654444444455677788887654 799999999987            5578999


Q ss_pred             HcCCCEEEEcccccC
Q 033625           79 SAGANCIVAGSSVFG   93 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~   93 (115)
                      ++|||-+++||+.+.
T Consensus       126 ~~GadKVvI~T~ai~  140 (323)
T d1jvna1         126 RSGADKVSIGTDAVY  140 (323)
T ss_dssp             HHTCSEEEECHHHHH
T ss_pred             HcCCCeEEechHHhh
Confidence            999999999998774

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=97.19  E-value=0.0017  Score=46.81  Aligned_cols=110  Identities=22%  Similarity=0.331  Sum_probs=72.1

Q ss_pred             eEEEecCCCCHHhHHHhHhC--CCCCCEEEEEeee---------------------CCCCCcccchhHHHHHHHHHhhC-
Q 033625            3 PGVALKPGTSVEEVYPLVEG--ANPVEMVLVMTVE---------------------PGFGGQKFMPEMMDKVRSLRNRY-   58 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~--~~~vD~vlvm~v~---------------------pG~~gq~~~~~~~~ki~~l~~~~-   58 (115)
                      +.+-+.|......+....+.  ...+|.+..+...                     -|.+|....+..++.+.++++.. 
T Consensus       161 v~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~  240 (311)
T d1juba_         161 LGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK  240 (311)
T ss_dssp             EEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSC
T ss_pred             eeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcC
Confidence            45666776655443332211  2467777654321                     12233444567788888887753 


Q ss_pred             CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccccc-CCCCH-HHHHHHHHHHHHHHh
Q 033625           59 PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF-GAPEP-AHVISLMRKSVEDAQ  112 (115)
Q Consensus        59 ~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif-~~~d~-~~~~~~l~~~~~~~~  112 (115)
                      +++||.+.|||+ .+.+-++..+|||.+=++|+++ +.++. ..-.++|++.+++.+
T Consensus       241 ~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~~L~~~m~~~G  297 (311)
T d1juba_         241 PEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMNQKG  297 (311)
T ss_dssp             TTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHHHHT
T ss_pred             CCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHHHHHHHHHHHcC
Confidence            679999999995 7888899999999999999975 44443 455566776666543

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00014  Score=51.50  Aligned_cols=85  Identities=16%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~   87 (115)
                      ...|++..+.|.+  .++|.+-+.-.+.-..+.......   +..+++.  ..|+.+.||| +.+++..+.+.|+|-+++
T Consensus        29 ~~dP~~~a~~~~~--~g~~~l~ivDLda~~~~~~~~~~~---~~~~~~~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi  101 (241)
T d1qo2a_          29 EKDPVELVEKLIE--EGFTLIHVVDLSNAIENSGENLPV---LEKLSEF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIV  101 (241)
T ss_dssp             SSCHHHHHHHHHH--TTCCCEEEEEHHHHHHCCCTTHHH---HHHGGGG--GGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred             CCCHHHHHHHHHH--CCCCEEEEEecccccccCCcchhh---eehhccc--ccchhhhhhhhhhhhhhhccccccceEec
Confidence            3578887777763  478999887665544444433333   3334444  3799999999 789999999999999999


Q ss_pred             cccccCCCCHHHH
Q 033625           88 GSSVFGAPEPAHV  100 (115)
Q Consensus        88 Gsaif~~~d~~~~  100 (115)
                      +|+++..++..+.
T Consensus       102 ~s~~~~~~~~~~~  114 (241)
T d1qo2a_         102 SSKVLEDPSFLKS  114 (241)
T ss_dssp             CHHHHHCTTHHHH
T ss_pred             CcccccCchhhhh
Confidence            9999987765444

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.002  Score=46.27  Aligned_cols=87  Identities=15%  Similarity=0.262  Sum_probs=58.7

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsai   91 (115)
                      +.++..++. ...+.|+|=..+-.  .-.......   .++....| +..+++-+|| +.+.+..+ .+|+|.+.+|+++
T Consensus       161 ~El~~al~~-~~a~iiGINnRdL~--t~~vd~~~~---~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sL  233 (251)
T d1i4na_         161 EDLEKVFSV-IRPKIIGINTRDLD--TFEIKKNVL---WELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSI  233 (251)
T ss_dssp             HHHHHHHTT-CCCSEEEEECBCTT--TCCBCTTHH---HHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHH
T ss_pred             HHHHHHhcc-cccceeeeeecchh--ccchhhhHH---HHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHH
Confidence            344444411 35777766444332  222233333   34444444 5778899999 78889887 5799999999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 033625           92 FGAPEPAHVISLMRKS  107 (115)
Q Consensus        92 f~~~d~~~~~~~l~~~  107 (115)
                      .+++||.+.+++|++.
T Consensus       234 m~~~~p~~~l~~l~a~  249 (251)
T d1i4na_         234 MKAENPRRFLEEMRAW  249 (251)
T ss_dssp             HHCSSHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHhc
Confidence            9999999999998864

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00053  Score=49.18  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=35.4

Q ss_pred             hhhHHHHHHcCCCEEEEccccc-CCCCHHHHHHHHHHH-HHHHhh
Q 033625           71 PSTIAEAASAGANCIVAGSSVF-GAPEPAHVISLMRKS-VEDAQK  113 (115)
Q Consensus        71 ~~ni~~l~~~Gad~iv~Gsaif-~~~d~~~~~~~l~~~-~~~~~~  113 (115)
                      ..+..+..+.|+|.+|+|++|+ +++||.++++++++. ++..++
T Consensus       217 ~~tp~eAi~~Gad~iVVGR~I~~aa~dp~~aak~~r~~~~~~~l~  261 (267)
T d1dqwa_         217 YRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLR  261 (267)
T ss_dssp             CBCHHHHHHTTCCEEEECGGGTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHCCCCEEEECChhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4456788899999999999997 578999999999998 454443

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.92  E-value=0.00014  Score=51.20  Aligned_cols=42  Identities=17%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             HHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEccccc
Q 033625           50 KVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        50 ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .+.+.++...++|+.+=+|| |+++++++.+ +||++|+||+|.
T Consensus       177 ~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaiv  219 (231)
T d2f6ua1         177 LVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIY  219 (231)
T ss_dssp             HHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHH
T ss_pred             HHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHh
Confidence            34445555567999999999 7899999986 799999999985

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.00022  Score=49.67  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=26.9

Q ss_pred             HHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           77 AASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        77 l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      ....|||++|+|++|++++||.++++++++
T Consensus       169 ai~~GAd~iVVGR~It~s~dp~~~~~~i~e  198 (198)
T d1vqta1         169 EMKGIANFAVLGREIYLSENPREKIKRIKE  198 (198)
T ss_dssp             HHTTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred             HHHcCCCEEEECCcccCCCCHHHHHHHHhC
Confidence            457899999999999999999999998863

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00067  Score=49.89  Aligned_cols=93  Identities=23%  Similarity=0.329  Sum_probs=65.5

Q ss_pred             EEEecCCCCHHhHHHhHhCC--CCCCEEEEEeee---------------CCCCCcccchhHHHHHHHHHhhC-CCCcEEE
Q 033625            4 GVALKPGTSVEEVYPLVEGA--NPVEMVLVMTVE---------------PGFGGQKFMPEMMDKVRSLRNRY-PSLDIEV   65 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~--~~vD~vlvm~v~---------------pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~   65 (115)
                      -+=+.|++..+.+.+..+.+  ..+|.+......               -|.+|....+.+++.++++++.. +++||..
T Consensus       215 ~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG  294 (336)
T d1f76a_         215 AVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIG  294 (336)
T ss_dssp             EEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred             ccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEE
Confidence            45567887755554444221  356666554321               22345666788888899988764 5799999


Q ss_pred             EcCC-ChhhHHHHHHcCCCEEEEcccc-cCCCC
Q 033625           66 DGGL-GPSTIAEAASAGANCIVAGSSV-FGAPE   96 (115)
Q Consensus        66 dGGI-~~~ni~~l~~~Gad~iv~Gsai-f~~~d   96 (115)
                      -||| |.+.+.++..+||+.+=++|++ |+.+.
T Consensus       295 ~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp~  327 (336)
T d1f76a_         295 VGGIDSVIAAREKIAAGASLVQIYSGFIFKGPP  327 (336)
T ss_dssp             ESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHH
T ss_pred             ECCCCCHHHHHHHHHcCCcHHHHHHHHHhcChH
Confidence            9999 6889999999999999999995 65443

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=96.82  E-value=0.0014  Score=47.09  Aligned_cols=71  Identities=15%  Similarity=0.120  Sum_probs=53.2

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      .+.+.++.+++  -++|.||      ..+|..-..+.++.|+++.+...+..|.+-||||.+|++.+.++|++-+=.+.
T Consensus       128 d~~~al~~Li~--lG~~rIL------TSGg~~~a~~G~~~L~~L~~~a~~~iIm~GgGI~~~Ni~~l~~~g~~e~H~sa  198 (247)
T d1twda_         128 NPLYTLNNLAE--LGIARVL------TSGQKSDALQGLSKIMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSA  198 (247)
T ss_dssp             CHHHHHHHHHH--HTCCEEE------ECTTSSSTTTTHHHHHHHHTSSSCCEEEEESSCCTTTHHHHHHHTCSEEEECC
T ss_pred             CHHHHHHHHHh--cCCCeEe------ccCCCCchhHHHHHHHHHHHhcCCcEEEecCCCCHHHHHHHHHcCCCEEEECC
Confidence            45667777662  2688887      22344445678888998887655666899999999999999999999887653

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.003  Score=46.81  Aligned_cols=107  Identities=16%  Similarity=0.217  Sum_probs=73.0

Q ss_pred             EEEecCCCCHHhHHHh---HhCCCCCCEEEEEeee---------------CCCCCcccchhHHHHHHHHHhhC-CCCcEE
Q 033625            4 GVALKPGTSVEEVYPL---VEGANPVEMVLVMTVE---------------PGFGGQKFMPEMMDKVRSLRNRY-PSLDIE   64 (115)
Q Consensus         4 Glal~p~t~~~~~~~~---~~~~~~vD~vlvm~v~---------------pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~   64 (115)
                      -+-+.|+...+.+.+.   +.. ..+|.+.+....               .|++|....+..+..++++++.. .++||.
T Consensus       224 ~vKlsP~~~~~~i~~~a~~~~~-~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIi  302 (367)
T d1d3ga_         224 LVKIAPDLTSQDKEDIASVVKE-LGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPII  302 (367)
T ss_dssp             EEEECSCCCHHHHHHHHHHHHH-HTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEE
T ss_pred             ccccCcccchhhhhhhHHHHHh-hhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEE
Confidence            3456777765443332   322 367777654332               23445555677788888887754 479999


Q ss_pred             EEcCC-ChhhHHHHHHcCCCEEEEcccc-cCCCCH-HHHHHHHHHHHHHH
Q 033625           65 VDGGL-GPSTIAEAASAGANCIVAGSSV-FGAPEP-AHVISLMRKSVEDA  111 (115)
Q Consensus        65 ~dGGI-~~~ni~~l~~~Gad~iv~Gsai-f~~~d~-~~~~~~l~~~~~~~  111 (115)
                      ..||| |.+.+.++..+|||.+=++|++ |+.++. .+-.+.|++.++++
T Consensus       303 g~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~  352 (367)
T d1d3ga_         303 GVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQ  352 (367)
T ss_dssp             EESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcHHHHHHHHHHHHHHHHc
Confidence            99998 4788999999999999999995 766654 45556677766654

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.77  E-value=0.0024  Score=44.70  Aligned_cols=84  Identities=13%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHH---cCCCEEEEcc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAAS---AGANCIVAGS   89 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~---~Gad~iv~Gs   89 (115)
                      +.++.+. + ..+.-++++.+.---+.+-+..+.+   +.+++. .+.|+.+.||++ .+.+..+.+   .|++.+++||
T Consensus       149 ~~~~~~~-~-~g~~eii~tdi~~dGt~~G~d~~l~---~~i~~~-~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~  222 (239)
T d1vzwa1         149 ETLDRLN-K-EGCARYVVTDIAKDGTLQGPNLELL---KNVCAA-TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK  222 (239)
T ss_dssp             HHHHHHH-H-TTCCCEEEEEC-------CCCHHHH---HHHHHT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred             hhhhhhh-h-ccccEEEEEeecccceecCCcchhh---hhhhhc-cCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhH
Confidence            4555544 1 4678889998877545555554454   444444 368999999997 455666654   4999999999


Q ss_pred             cccCCC-CHHHHHHH
Q 033625           90 SVFGAP-EPAHVISL  103 (115)
Q Consensus        90 aif~~~-d~~~~~~~  103 (115)
                      +++... +++++.+.
T Consensus       223 al~~g~i~~~e~~~~  237 (239)
T d1vzwa1         223 ALYAKAFTLEEALEA  237 (239)
T ss_dssp             HHHTTSSCHHHHHHH
T ss_pred             HHHCCCCCHHHHHHh
Confidence            987654 77776654

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.0047  Score=44.38  Aligned_cols=77  Identities=12%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHH-hhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR-NRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~-~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      +++.|+|=..+.-  ..........++.++. +...+..+++-+|| +.+.+..+ .+|+|.|.+|+++.+++||.+.++
T Consensus       174 ~a~iIGINnRdL~--t~~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d~~~~l~  250 (254)
T d1vc4a_         174 GAEVLGINNRDLA--TLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALR  250 (254)
T ss_dssp             TCSEEEEESBCTT--TCCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCHHHHHH
T ss_pred             CCCEEEEeccchh--hhhcchHHHHHhhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCHHHHHH
Confidence            6777766444442  2223344555555543 33346778999999 78888877 579999999999999999999888


Q ss_pred             HH
Q 033625          103 LM  104 (115)
Q Consensus       103 ~l  104 (115)
                      +|
T Consensus       251 ~L  252 (254)
T d1vc4a_         251 EL  252 (254)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.67  E-value=0.00082  Score=51.06  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=74.0

Q ss_pred             EEecCCCCHHhHHHhHhC--CCCCCEEEEEeeeCC-------------CCCcccchhHHHHHHHHHhhC-CCCcEEEEcC
Q 033625            5 VALKPGTSVEEVYPLVEG--ANPVEMVLVMTVEPG-------------FGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGG   68 (115)
Q Consensus         5 lal~p~t~~~~~~~~~~~--~~~vD~vlvm~v~pG-------------~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGG   68 (115)
                      +=|.|+-..+.+.++++.  ..++|.+.+.....+             .+|....+.+++.+.++++.. +++||..-||
T Consensus       271 vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGG  350 (409)
T d1tv5a1         271 VKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGG  350 (409)
T ss_dssp             EEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESS
T ss_pred             EEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECC
Confidence            345565554444443322  146777766543322             245556677888899998765 5799999999


Q ss_pred             C-ChhhHHHHHHcCCCEEEEcccc-cCCCCH-HHHHHHHHHHHHHHh
Q 033625           69 L-GPSTIAEAASAGANCIVAGSSV-FGAPEP-AHVISLMRKSVEDAQ  112 (115)
Q Consensus        69 I-~~~ni~~l~~~Gad~iv~Gsai-f~~~d~-~~~~~~l~~~~~~~~  112 (115)
                      | +.+.+-+...+|||.+=++|++ |+.+.. .+-.+.|.+.+++.+
T Consensus       351 I~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g  397 (409)
T d1tv5a1         351 IFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRG  397 (409)
T ss_dssp             CCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcCCCHHhhhhHHHhcChHHHHHHHHHHHHHHHHcC
Confidence            9 6799999999999999999985 665654 555566777776543

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.66  E-value=0.0015  Score=45.84  Aligned_cols=81  Identities=19%  Similarity=0.368  Sum_probs=59.0

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~G   88 (115)
                      ..|++..+.|.+  .++|.+.+.-.+.-.+ ....   .+.++++.+.. .+|++++|||+ .+.+..+...|+|-++++
T Consensus        31 ~dP~~~a~~~~~--~ga~~l~i~DLd~~~~-~~~~---~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~  103 (239)
T d1vzwa1          31 GSPLEAALAWQR--SGAEWLHLVDLDAAFG-TGDN---RALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLG  103 (239)
T ss_dssp             CCHHHHHHHHHH--TTCSEEEEEEHHHHHT-SCCC---HHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHHHH--cCCCEEEEEeeccccc-ccch---HHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhh
Confidence            367787777763  4789998876664332 2222   23456666655 68999999997 568889999999999999


Q ss_pred             ccccCCCCH
Q 033625           89 SSVFGAPEP   97 (115)
Q Consensus        89 saif~~~d~   97 (115)
                      |..|..++.
T Consensus       104 s~~~~~~~~  112 (239)
T d1vzwa1         104 TAALETPEW  112 (239)
T ss_dssp             HHHHHCHHH
T ss_pred             HHhhhcccc
Confidence            999875543

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.0024  Score=47.10  Aligned_cols=83  Identities=14%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             HhHhCCCCCCEEEEEeeeCCCCCcccchh-HHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCC
Q 033625           18 PLVEGANPVEMVLVMTVEPGFGGQKFMPE-MMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGA   94 (115)
Q Consensus        18 ~~~~~~~~vD~vlvm~v~pG~~gq~~~~~-~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~   94 (115)
                      +.+++ .++|++-+..-........+.+. ...-.+++++. .++|+.+.|+| +++....+++.| +|.+.+|+++...
T Consensus       235 ~~l~~-~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iad  312 (337)
T d1z41a1         235 KWMKE-QGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ-ADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD  312 (337)
T ss_dssp             HHHHH-TTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH-HCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred             HHHHH-cCCcccccccccccccccccCCcccHHHHHHHHHh-cCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhC
Confidence            33433 57999876543322222222222 22223444444 36899999999 599999999998 9999999999988


Q ss_pred             CCHHHHHH
Q 033625           95 PEPAHVIS  102 (115)
Q Consensus        95 ~d~~~~~~  102 (115)
                      +|+.+.++
T Consensus       313 Pd~~~k~~  320 (337)
T d1z41a1         313 PFFARTAA  320 (337)
T ss_dssp             TTHHHHHH
T ss_pred             chHHHHHH
Confidence            99865543

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=96.63  E-value=0.0023  Score=45.47  Aligned_cols=50  Identities=20%  Similarity=0.283  Sum_probs=40.6

Q ss_pred             CCcEEEEcCCChhh-------HHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHH
Q 033625           60 SLDIEVDGGLGPST-------IAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        60 ~~~i~~dGGI~~~n-------i~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                      .+|+.+.||-...+       ++...++||.++++|+.||+.+||.+.++.++++++
T Consensus       194 ~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~~~~al~~ivH  250 (251)
T d1ojxa_         194 KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY  250 (251)
T ss_dssp             TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHHC
T ss_pred             CCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCcHHHHHHHHHHHhc
Confidence            57888888865433       233467899999999999999999999999998764

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.01  Score=42.50  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=52.5

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCC-ChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGL-GPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI-~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      .+.+.|+|=..+-.  .-........++   ....| +..+++-+|| +.+.+..+ ..|+|.|.+|+++.+++||.+.+
T Consensus       176 ~~a~iIGINnRnL~--tf~vd~~~t~~L---~~~ip~~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~~dp~~~l  249 (254)
T d1piia2         176 LGAKVVGINNRDLR--DLSIDLNRTREL---APKLGHNVTVISESGINTYAQVREL-SHFANGFLIGSALMAHDDLHAAV  249 (254)
T ss_dssp             TTCSEEEEESEETT--TTEECTHHHHHH---HHHHCTTSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTCSCHHHHH
T ss_pred             hcccccCccccchh--hhhhhhHHHHHH---HHhCCCCCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCCHHHHH
Confidence            46788775444432  222233333333   33333 5778889999 67888887 67999999999999999999998


Q ss_pred             HHH
Q 033625          102 SLM  104 (115)
Q Consensus       102 ~~l  104 (115)
                      ++|
T Consensus       250 ~~L  252 (254)
T d1piia2         250 RRV  252 (254)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.0027  Score=44.56  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHc------CCCEE
Q 033625           13 VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASA------GANCI   85 (115)
Q Consensus        13 ~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~------Gad~i   85 (115)
                      .+.++.+. + ..+.-++++.+.-.-+.+-+..+.++++   ++. .++|+.+.||++ .+.+..+.+.      |++.+
T Consensus       147 ~~~~~~~~-~-~g~~eii~~dId~dGt~~G~d~~l~~~i---~~~-~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gv  220 (241)
T d1qo2a_         147 VSLLKRLK-E-YGLEEIVHTEIEKDGTLQEHDFSLTKKI---AIE-AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGV  220 (241)
T ss_dssp             HHHHHHHH-T-TTCCEEEEEETTHHHHTCCCCHHHHHHH---HHH-HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred             hHHHHHhh-c-cccceEEEeehhhhhhccccchhhhhhh---hcc-CCceEEEECCCCCHHHHHHHHHccccccCCEeeE
Confidence            35555554 2 3688999999886545555555555554   433 468999999995 6778888764      48999


Q ss_pred             EEcccccCCC-CHHH
Q 033625           86 VAGSSVFGAP-EPAH   99 (115)
Q Consensus        86 v~Gsaif~~~-d~~~   99 (115)
                      ++||+++... ++.+
T Consensus       221 ivG~al~~g~l~~~~  235 (241)
T d1qo2a_         221 IVGRAFLEGILTVEV  235 (241)
T ss_dssp             EECHHHHTTSSCHHH
T ss_pred             EEHHHHHCCCCCHHH
Confidence            9999997544 4444

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0029  Score=43.43  Aligned_cols=63  Identities=24%  Similarity=0.318  Sum_probs=48.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      ..+|++++-+ .+|-+|+.|.-..++      . ....|+.+.||+|++|+.++.+.++.++=+.|.+=.+
T Consensus       117 ~~~d~~lld~-~~gGtG~~fdw~~~~------~-~~~~~~~LAGGl~~~Nv~~a~~~~p~gvDvsSGvE~~  179 (198)
T d1piia1         117 QHVDKYVLDN-GQGGSGQRFDWSLLN------G-QSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQ  179 (198)
T ss_dssp             TTCCEEEEES-CSCCSSCCCCGGGGT------T-SCCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGEEE
T ss_pred             hhhcccccCC-cccccceeeehhhhc------c-cccceeEEecCCCHHHHHHHHhcCCCEEEeCCcccCC
Confidence            4578877764 467789988765422      2 2356799999999999999999999999999988433

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.034  Score=34.48  Aligned_cols=77  Identities=14%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ..+|.|++--.-||.+|       ++-++++|+..+..|+. +.|--+.+...+..++||+-+     |.+.-++.+-..
T Consensus        42 ~~~dlillD~~mP~~~G-------~~~~~~lr~~~~~~~ii~it~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~  109 (120)
T d1p2fa2          42 EAFHVVVLDVMLPDYSG-------YEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDY-----VTKPFNPEILLA  109 (120)
T ss_dssp             SCCSEEEEESBCSSSBH-------HHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEE-----EESSCCHHHHHH
T ss_pred             CCCCEEEEeCcccccch-------hHHHHHHhhcCCCCcEEEEecCCCHHHHHHHHHCCCCEE-----EECCCCHHHHHH
Confidence            57899888777788765       45566777777777755 555556777888899999977     456558888888


Q ss_pred             HHHHHHHHHh
Q 033625          103 LMRKSVEDAQ  112 (115)
Q Consensus       103 ~l~~~~~~~~  112 (115)
                      .+++.++..+
T Consensus       110 ~i~~~l~r~r  119 (120)
T d1p2fa2         110 RVKRFLEREK  119 (120)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHcc
Confidence            8888776544

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=96.26  E-value=0.014  Score=43.90  Aligned_cols=78  Identities=22%  Similarity=0.491  Sum_probs=58.1

Q ss_pred             eEEEecCCCC-HHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGTS-VEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t~-~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|.|+..... .+....+++  .++|++.+-+.| |     ......+.++++++.+++++|.+=+=.|.+....|.++|
T Consensus       142 vgaAvg~~~~~~~ra~~L~~--aG~D~ivID~Ah-G-----~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~G  213 (388)
T d1eepa_         142 VGAAVSIDIDTIERVEELVK--AHVDILVIDSAH-G-----HSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVG  213 (388)
T ss_dssp             CEEEECSCTTHHHHHHHHHH--TTCSEEEECCSC-C-----SSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTT
T ss_pred             hhhccCCCHHHHHHHHHHHh--hccceeeeeccc-c-----chHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcC
Confidence            5667764433 456666653  489999765433 2     233456678888888889999888888999999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      ||++-+|
T Consensus       214 aD~VkVG  220 (388)
T d1eepa_         214 ADCLKVG  220 (388)
T ss_dssp             CSEEEEC
T ss_pred             CCeeeec
Confidence            9999888

>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Plasmodium vivax [TaxId: 5855]

Probab=96.16  E-value=0.005  Score=45.59  Aligned_cols=109  Identities=13%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             EEEecCCCCHHhHHHhHhCCC----CCCEEEEEeeeCCCCC-cc--------c---------------------------
Q 033625            4 GVALKPGTSVEEVYPLVEGAN----PVEMVLVMTVEPGFGG-QK--------F---------------------------   43 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~----~vD~vlvm~v~pG~~g-q~--------~---------------------------   43 (115)
                      .+.++|....+.+++++.++.    ..=++++.+.+|+... |.        .                           
T Consensus       173 avTVhp~~G~d~l~p~~~~~~~~~~kgv~vL~~tSn~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~V  252 (332)
T d2ffca1         173 SCTANIYMGTQMLRDICLDEECKRYYSTFVLVKTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQLHLEENGEFVGFV  252 (332)
T ss_dssp             EEEECCTTCSTTHHHHHBCTTSCCBCEEEEEEECSSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTTTGGGTCCEEEE
T ss_pred             EEEecccchHHHHHHHHHHHHhcccccceeecccCcchHHHHHhhcccccchhhHHHHHHHHHHHHHHHhhhccccccee
Confidence            478889999999998864322    1123455555665310 00        0                           


Q ss_pred             -chhHHHHHHHHHhhCCCCcEEEEc-CCChhhHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHh
Q 033625           44 -MPEMMDKVRSLRNRYPSLDIEVDG-GLGPSTIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ  112 (115)
Q Consensus        44 -~~~~~~ki~~l~~~~~~~~i~~dG-GI~~~ni~~l------~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~  112 (115)
                       .....+.++.+|+..++.+|.+=| |-......++      .+.|+|++++|+.|..++||.++++++++.+++..
T Consensus       253 ~gat~p~e~~~iR~~~~~~~iL~PGIGaQggDq~rv~t~~~a~~~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~e~l  329 (332)
T d2ffca1         253 VGANCYDEIKKIRELFPDCYILAPGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKEVL  329 (332)
T ss_dssp             ECTTCHHHHHHHHHHCTTCCEEECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             EeechhHHHHHHHHhCCCCeEEeCCcCcCCCCHHHHhCHHhHhhcCceEEEeCccccCCCCHHHHHHHHHHHHHHHH
Confidence             011123456666666677665533 2222233332      25689999999999999999999999999888764

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.03  E-value=0.013  Score=42.15  Aligned_cols=78  Identities=19%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCC---------------cccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhH
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGG---------------QKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTI   74 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~g---------------q~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni   74 (115)
                      +..+....+.+  .++|+|.+.. +.|-..               +.........+.+++...++++|.+||||. ...+
T Consensus       170 ~~~~~a~~~~~--~GaD~i~v~~-~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv  246 (329)
T d1p0ka_         170 MSKASAGKLYE--AGAAAVDIGG-YGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDV  246 (329)
T ss_dssp             CCHHHHHHHHH--HTCSEEEEEC----------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHH
T ss_pred             chHHHHHHHHh--cCCCEEEEcC-CCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHH
Confidence            44555555552  4899998753 333111               011122344455555556789999999996 5677


Q ss_pred             HHHHHcCCCEEEEcccc
Q 033625           75 AEAASAGANCIVAGSSV   91 (115)
Q Consensus        75 ~~l~~~Gad~iv~Gsai   91 (115)
                      -..+.+|||.+-+|+..
T Consensus       247 ~KAlalGAdaV~iGr~~  263 (329)
T d1p0ka_         247 AKAIALGASCTGMAGHF  263 (329)
T ss_dssp             HHHHHTTCSEEEECHHH
T ss_pred             HHHHHcCCCchhccHHH
Confidence            77789999999999874

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=95.89  E-value=0.023  Score=36.68  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=59.0

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC------hhhHHHHH
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG------PSTIAEAA   78 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~------~~ni~~l~   78 (115)
                      -|.+++|.+.+...+.+ ..+|.|.+-+..+. .    .+...+-++++++.. .++++.+=|++.      ++-.+++.
T Consensus        36 ~LG~~~p~e~iv~a~~~-~~~d~v~lS~~~~~-~----~~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~  109 (137)
T d1ccwa_          36 NIGVLSPQELFIKAAIE-TKADAILVSSLYGQ-G----EIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFK  109 (137)
T ss_dssp             EEEEEECHHHHHHHHHH-HTCSEEEEEECSST-H----HHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHH
T ss_pred             ecccccCHHHHHHHHHh-cCCCEEEEeecccc-c----hHHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHH
Confidence            35677898877777655 58999987555543 1    122222345555543 468877777663      44566788


Q ss_pred             HcCCCEEEEcccccC-CCCHHHHHHHHHHHHH
Q 033625           79 SAGANCIVAGSSVFG-APEPAHVISLMRKSVE  109 (115)
Q Consensus        79 ~~Gad~iv~Gsaif~-~~d~~~~~~~l~~~~~  109 (115)
                      +.|+|.      ||. ..++.+.+..+++.++
T Consensus       110 ~~Gv~~------if~~~t~~~~~~~~l~~~l~  135 (137)
T d1ccwa_         110 DMGYDR------VYAPGTPPEVGIADLKKDLN  135 (137)
T ss_dssp             HTTCSE------ECCTTCCHHHHHHHHHHHHT
T ss_pred             HcCCCE------EECCCCCHHHHHHHHHHHhC
Confidence            989875      453 3577888888887654

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.016  Score=42.41  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=40.6

Q ss_pred             HHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           51 VRSLRNRYPSLDIEVDGGL-GPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        51 i~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      .+++++. .++|+.+.|+| +++.+.++++.| +|.+.+|+++...+|+.+.+
T Consensus       272 ~~~ik~~-~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~  323 (330)
T d1ps9a1         272 TRKLKGH-VSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKA  323 (330)
T ss_dssp             HHHHTTS-CSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred             HHHHHhh-CCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHH
Confidence            3445544 37999999999 599999999988 99999999999888875544

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=95.75  E-value=0.017  Score=40.88  Aligned_cols=46  Identities=20%  Similarity=0.328  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccccc
Q 033625           47 MMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        47 ~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .++.+.++++..+++||.+||||. ...+-..+.+|||.+-+|+.++
T Consensus       221 ~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l  267 (310)
T d1vcfa1         221 TARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLL  267 (310)
T ss_dssp             HHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHH
Confidence            344555666666789999999996 5567777799999999999864

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.71  E-value=0.029  Score=39.86  Aligned_cols=69  Identities=20%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC-CCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccCCCCH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP-SLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFGAPEP   97 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~-~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~~~d~   97 (115)
                      .+++.|++=..  ............   .++....| +..+++-+||+ .+.+..+.++|+|.|.+|+++.+++|+
T Consensus       171 ~~a~iIGINnR--nL~t~~vd~~~~---~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~  241 (247)
T d1a53a_         171 IGARFIGINSR--DLETLEINKENQ---RKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPEK  241 (247)
T ss_dssp             TTCSEEEEESB--CTTTCCBCHHHH---HHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred             CCCCeEeeecc--ChhhhhhhhhHH---HHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence            47888764322  333333333333   33434444 67888999996 566899999999999999999998886

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=95.58  E-value=0.0067  Score=45.08  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc-CCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA-GANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~-Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ..+|+..+-...|......+.....+....+++.. ..|+.+-||++++....++.. ++|.+.+|+++...+|+.+.++
T Consensus       257 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~vi~~g~~~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~~  335 (364)
T d1icpa_         257 NKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY-KGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDLPKRFE  335 (364)
T ss_dssp             GGGCCSEEEEECCSCCC------CCCCSHHHHHHC-CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             hccceeeeeeecCcccccccccccHHHHHHHHHhc-CCCEEEECCCCHHHHHHHHHcCCCceehhHHHHHHCccHHHHHH
Confidence            45555555455565443333222222234444443 578999999999999987665 5999999999988898865443

>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]

Probab=95.51  E-value=0.012  Score=43.28  Aligned_cols=109  Identities=16%  Similarity=0.232  Sum_probs=68.9

Q ss_pred             EEEecCCCCHHhHHHhHhCCCC----CCEEEEEeeeCCCC---------Ccccc--------------------------
Q 033625            4 GVALKPGTSVEEVYPLVEGANP----VEMVLVMTVEPGFG---------GQKFM--------------------------   44 (115)
Q Consensus         4 Glal~p~t~~~~~~~~~~~~~~----vD~vlvm~v~pG~~---------gq~~~--------------------------   44 (115)
                      .+.++|....+.++++++.+..    .=+|++.+.+|+-.         +....                          
T Consensus       161 ~vTVhp~~G~d~l~~~~~~~~~~~~kgv~vl~~tSn~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~G~V  240 (323)
T d2q8za1         161 SCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFV  240 (323)
T ss_dssp             EEEECCTTCSGGGGGTSEETTTTEECEEEEEEECCSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTTTGGGTCCEEEE
T ss_pred             EEEecccccHHHHHHHHHHHhhccccceeeecccCCchHHHHhhhcccccchhHHHHHHHHHHHHHHHhhhccccccceE
Confidence            4678888888999888743221    12355555677631         11100                          


Q ss_pred             --hhHHHHHHHHHhhCCCCcEEEEcCCChh--hHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625           45 --PEMMDKVRSLRNRYPSLDIEVDGGLGPS--TIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  113 (115)
Q Consensus        45 --~~~~~ki~~l~~~~~~~~i~~dGGI~~~--ni~~l------~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~  113 (115)
                        ....+.++.+|+..++.++.+ =||..+  ...++      .+.|+|++++|+.|++++||.++++++++.+++.++
T Consensus       241 vgat~p~e~~~ir~~~~~~~iL~-PGIGaQggDq~rv~t~~~a~~~g~~~ivvgR~I~~a~dp~~aa~~~~~ei~~~l~  318 (323)
T d2q8za1         241 VGANSYDEMNYIRTYFPNCYILS-PGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILK  318 (323)
T ss_dssp             ECTTCHHHHHHHHHHSTTCCEEE-CCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             EeecchHHHHHHHHhCCCCeEEc-CCccccCCCHhHhhCHHHHhhcCceEEEEChhhcCCCCHHHHHHHHHHHHHHHHH
Confidence              011244566666667777654 444332  12222      246899999999999999999999999988877553

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=95.41  E-value=0.051  Score=40.06  Aligned_cols=74  Identities=12%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .++||+-+-.... ..+..+......   .+++. .+.++.+-|+++++.+.++++.| +|.+.+|+++...+|+.+.++
T Consensus       262 ~gvd~i~vs~~~~-~~~~~~~~~~~~---~~~~~-~~~~vi~~G~~t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~~  336 (363)
T d1vyra_         262 RGIAYLHMSETDL-AGGKPYSEAFRQ---KVRER-FHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ  336 (363)
T ss_dssp             TTCSEEEEECCBT-TBCCCCCHHHHH---HHHHH-CCSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             cCCeeeecccCCc-cCCccccHHHHH---HHHHh-cCceEEecCCCCHHHHHHHHHCCCcceehhhHHHHHCccHHHHHH
Confidence            4799997643221 223334333322   23333 36789999999999999999998 899999999999998865544

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.37  E-value=0.047  Score=40.06  Aligned_cols=67  Identities=27%  Similarity=0.389  Sum_probs=45.1

Q ss_pred             CCCCEEEEEeeeCCCC---------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFG---------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~---------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .++|.|.+ .+-||..         |.+... ++....+.++. .++||.+||||. ...+...+.+|||.+-+||.+-.
T Consensus       159 ~GaD~v~V-Gig~Gs~ctt~~~~G~g~p~~s-ai~~~~~~~~~-~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~  235 (330)
T d1vrda1         159 AGADAVKV-GVGPGSICTTRVVAGVGVPQLT-AVMECSEVARK-YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAG  235 (330)
T ss_dssp             TTCSEEEE-CSSCSTTCHHHHHHCCCCCHHH-HHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             cCCCEEee-ccccCccccccceeccccccch-hHHHHHHHHHh-cCceEEecCCcccCCchheeeeccCceeeecchhee
Confidence            57999987 6777741         222111 22233344333 379999999996 56777778999999999987644

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=95.33  E-value=0.017  Score=39.46  Aligned_cols=63  Identities=24%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             CCCEEEEEeeeC--CCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHH-HcCCCEEEEccccc
Q 033625           25 PVEMVLVMTVEP--GFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVF   92 (115)
Q Consensus        25 ~vD~vlvm~v~p--G~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~-~~Gad~iv~Gsaif   92 (115)
                      ..+++++.+..+  |-+|+.|.-..+..+   ...  ..|+...|||+++|+.+++ ..+++++=+.|.+=
T Consensus       119 ~~~~~l~d~~~~~~GGtG~~~dw~~~~~~---~~~--~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsSgvE  184 (205)
T d1nsja_         119 REFPILLDTKTPEYGGSGKTFDWSLILPY---RDR--FRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVE  184 (205)
T ss_dssp             TTSCEEEEESCSSSSSCCSCCCGGGTGGG---GGG--SSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGE
T ss_pred             ccceeeeccccccCCCCCcccchhhcccc---hhc--ccceeeecCCCHHHHHHHHHHhCCCEEEEcCccc
Confidence            457777777665  456788876543332   222  3478999999999999876 58999998988883

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.25  E-value=0.046  Score=40.51  Aligned_cols=74  Identities=16%  Similarity=0.288  Sum_probs=51.8

Q ss_pred             CCCEEEEEeeeCCCCCccc-chhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKF-MPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~-~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .+|++-+.  .|.+.+..+ .+..+  .+++++.. +.|+.+.|+++++...++++.| +|.+.+|+++...+|+.+.++
T Consensus       265 ~i~~~~~~--~~~~~~~~~~~~~~~--~~~i~~~~-~~pvi~~G~i~~~~ae~~l~~g~aDlV~~gR~~iadPd~~~K~~  339 (374)
T d1gwja_         265 GLAYLHFN--EPDWIGGDITYPEGF--REQMRQRF-KGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFR  339 (374)
T ss_dssp             TCSEEEEE--CSCBTTBCCCCCTTH--HHHHHHHC-CSEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             CceEEEec--cCcccCCCcchhHHH--HHHHHHHc-CCCEEEECCcCHHHHHHHHHcCCCcEehhhHHHHHCccHHHHHH
Confidence            67887653  344433322 22222  23444443 6899999999999999988887 999999999999898866544


Q ss_pred             H
Q 033625          103 L  103 (115)
Q Consensus       103 ~  103 (115)
                      +
T Consensus       340 ~  340 (374)
T d1gwja_         340 L  340 (374)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.22  E-value=0.034  Score=41.62  Aligned_cols=79  Identities=14%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             eEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCC
Q 033625            3 PGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGA   82 (115)
Q Consensus         3 ~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Ga   82 (115)
                      +|.++.+........+.+.+ .++|++.+-..++-      .....+.++.+++..++.++.+=.=.|.+....|.++||
T Consensus       110 v~aavg~~~~~~~~~~~l~~-agv~vi~id~a~g~------~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGA  182 (378)
T d1jr1a1         110 CGAAIGTHEDDKYRLDLLAL-AGVDVVVLDSSQGN------SIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGV  182 (378)
T ss_dssp             CEEEECSSTHHHHHHHHHHH-HTCCEEEECCSSCC------SHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTC
T ss_pred             EEEEeccCHHHHHHHHHHHh-hccceEeeeccCcc------chhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCC
Confidence            56677655443333333322 57899876544432      234455677777777888877666667888999999999


Q ss_pred             CEEEEc
Q 033625           83 NCIVAG   88 (115)
Q Consensus        83 d~iv~G   88 (115)
                      |++.+|
T Consensus       183 D~VkVG  188 (378)
T d1jr1a1         183 DALRVG  188 (378)
T ss_dssp             SEEEEC
T ss_pred             CEEeec
Confidence            999998

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.22  E-value=0.051  Score=39.61  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=41.6

Q ss_pred             HHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcC-CCEEEEcccccCCCCHHHHHH
Q 033625           51 VRSLRNRYPSLDIEVDGGLG-PSTIAEAASAG-ANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        51 i~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .+.+++. .++|+.+.|||+ ++.+.++++.| +|.+.+|+.+...+|....++
T Consensus       283 ~~~ik~~-~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~~  335 (340)
T d1djqa1         283 VKLVKQV-SKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE  335 (340)
T ss_dssp             HHHHHTT-CSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHH-cCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHHH
Confidence            4455554 378999999995 99999999998 999999999998898765543

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=95.16  E-value=0.052  Score=36.72  Aligned_cols=63  Identities=17%  Similarity=0.324  Sum_probs=45.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccccc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      ..+|++++-+-.+| +|..+...-...+   ..  ...|+...||||++|+.++...++.++=+.|.+=
T Consensus       116 ~~~~~~L~D~~~~g-~g~~~~~~~~~~~---~~--~~~~~~LAGGl~~~Nv~~~~~~~p~gvDvsSGvE  178 (200)
T d1v5xa_         116 YPAQALLLDGKRPG-SGEAYPRAWAKPL---LA--TGRRVILAGGIAPENLEEVLALRPYALDLASGVE  178 (200)
T ss_dssp             SSCSEEEEECSSTT-SCCCCCGGGGHHH---HH--TTSCEEECSSCCSTTHHHHHHHCCSEEEESGGGE
T ss_pred             cchhheeecccccC-cccccchHHHhhh---hh--ccCceEecCCCCHHHHHHHHhcCCCEEEEcCceE
Confidence            46899998876666 4444432221111   11  2468999999999999999999999999999984

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.10  E-value=0.088  Score=38.52  Aligned_cols=77  Identities=22%  Similarity=0.431  Sum_probs=54.2

Q ss_pred             eEEEec--CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHc
Q 033625            3 PGVALK--PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASA   80 (115)
Q Consensus         3 ~Glal~--p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~   80 (115)
                      ++.++.  |+ ..+.++.+++  .++|++.+- +--|+     .....+.++.+++.++++++.+=.-.|.+....|.++
T Consensus        89 v~~~vgv~~~-~~e~~~~li~--agvd~ivId-~A~G~-----~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~  159 (330)
T d1vrda1          89 VGAAVGTSPE-TMERVEKLVK--AGVDVIVID-TAHGH-----SRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA  159 (330)
T ss_dssp             CEEEECSSTT-HHHHHHHHHH--TTCSEEEEC-CSCCS-----SHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT
T ss_pred             EEEEEecCHH-HHHHHHHHHH--CCCCEEEEe-cCCCC-----chhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHc
Confidence            455553  43 3466666663  478988653 22222     2344556777778888898888888899999999999


Q ss_pred             CCCEEEEc
Q 033625           81 GANCIVAG   88 (115)
Q Consensus        81 Gad~iv~G   88 (115)
                      |||.+.+|
T Consensus       160 GaD~v~VG  167 (330)
T d1vrda1         160 GADAVKVG  167 (330)
T ss_dssp             TCSEEEEC
T ss_pred             CCCEEeec
Confidence            99999997

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.04  E-value=0.22  Score=31.94  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE--EEcCCChhh-HHHHHHcCCCEEEEccc
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE--VDGGLGPST-IAEAASAGANCIVAGSS   90 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~--~dGGI~~~n-i~~l~~~Gad~iv~Gsa   90 (115)
                      +.++.+++| +.+|.|++....+.+.+..........++.+++.....|+.  ..||-..+. .+.|.++|+=       
T Consensus        68 ~~l~~~~~d-~~vd~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~~~~~~l~~~Gip-------  139 (163)
T d2csua3          68 RTAKLLLQD-PNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIP-------  139 (163)
T ss_dssp             HHHHHHHHS-TTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCC-------
T ss_pred             HHHHHHHcC-CCcCEEEEeeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCChHHHHHHHHHCCCC-------
Confidence            456666666 79999988777777666555544444455555554455653  567766555 4456776644       


Q ss_pred             ccCCCCHHHHHHHHHHHHHHH
Q 033625           91 VFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        91 if~~~d~~~~~~~l~~~~~~~  111 (115)
                      +|  +++..+++.+....+-+
T Consensus       140 ~f--~~pe~a~~Al~~l~~~~  158 (163)
T d2csua3         140 TY--ERPEDVASAAYALVEQA  158 (163)
T ss_dssp             EE--SSHHHHHHHHHHHHHHH
T ss_pred             cC--CCHHHHHHHHHHHHHHH
Confidence            34  58899999988776643

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.02  E-value=0.057  Score=40.32  Aligned_cols=82  Identities=22%  Similarity=0.209  Sum_probs=49.9

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC---------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHH
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFG---------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIA   75 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~---------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~   75 (115)
                      +=|..|+.....-.-   .++|.|.+. +-||-.         |-+. ...+-.+.+.++. .++||.+||||. ...+.
T Consensus       165 aGnVaT~e~a~~L~~---aGAD~VkVG-iG~Gs~ctTr~~tGvG~pq-~sai~~~~~~a~~-~~vpIIADGGi~~~gdia  238 (378)
T d1jr1a1         165 GGNVVTAAQAKNLID---AGVDALRVG-MGCGSICITQEVLACGRPQ-ATAVYKVSEYARR-FGVPVIADGGIQNVGHIA  238 (378)
T ss_dssp             EEEECSHHHHHHHHH---HTCSEEEEC-SSCSTTBCHHHHHCCCCCH-HHHHHHHHHHHGG-GTCCEEEESCCCSHHHHH
T ss_pred             ecccccHHHHHHHHH---hCCCEEeec-cccccccccccccccCccc-chhhhHHHHhhcc-cCCceecccccccCCcee
Confidence            334445444333223   579998763 445521         1111 1222233344333 369999999996 56777


Q ss_pred             HHHHcCCCEEEEcccccC
Q 033625           76 EAASAGANCIVAGSSVFG   93 (115)
Q Consensus        76 ~l~~~Gad~iv~Gsaif~   93 (115)
                      ..+.+|||.+-+||.+-.
T Consensus       239 kAla~GAd~VMmGs~fAg  256 (378)
T d1jr1a1         239 KALALGASTVMMGSLLAA  256 (378)
T ss_dssp             HHHHTTCSEEEESTTTTT
T ss_pred             eEEEeecceeeecceeee
Confidence            778999999999997764

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

Probab=94.99  E-value=0.018  Score=42.41  Aligned_cols=64  Identities=17%  Similarity=0.316  Sum_probs=42.6

Q ss_pred             HHHHHHHhhCCCCcEEEEcCCChh--hHHHH------HHcCCCEEEEcccccCCCCHHHHHHHHHHHHHHHhh
Q 033625           49 DKVRSLRNRYPSLDIEVDGGLGPS--TIAEA------ASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK  113 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~dGGI~~~--ni~~l------~~~Gad~iv~Gsaif~~~d~~~~~~~l~~~~~~~~~  113 (115)
                      +.++.+|+..++.++.+ =||..+  +..++      .+.|++++++|+.|..++||.++++++++.+.+.++
T Consensus       249 ~el~~iR~~~~~~~iL~-PGIGaQggDq~rv~~~~~a~~~g~~~ivvgR~I~~A~dp~~aa~~i~~~i~~~~~  320 (324)
T d2fdsa1         249 EEMKIIRNKFPDSYILS-PGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQIFK  320 (324)
T ss_dssp             HHHHHHHHHSTTCCEEE-CCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEe-CcccCCCCCHHHHhChhhhhhcCceEEEeChhhccCCCHHHHHHHHHHHHHHHHH
Confidence            45566666666665532 333322  22222      245889999999999999999999999988877543

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.89  E-value=0.042  Score=40.17  Aligned_cols=84  Identities=19%  Similarity=0.389  Sum_probs=54.4

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc-cC-----CC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV-FG-----AP   95 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai-f~-----~~   95 (115)
                      .++|.+.+  .+-|...-+..+.+.+.+.++++. ..+++|.+||||+ .-.+-..+..|||.+-+|+.+ |.     .+
T Consensus       237 ~G~d~i~v--snhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~  314 (349)
T d1tb3a1         237 HNVQGIVV--SNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGED  314 (349)
T ss_dssp             TTCSEEEE--CCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHH
T ss_pred             hhccceee--eccccccccccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHH
Confidence            57888865  233323334456677777777665 3569999999997 345666679999999999874 43     12


Q ss_pred             CHHHHHHHHHHHHH
Q 033625           96 EPAHVISLMRKSVE  109 (115)
Q Consensus        96 d~~~~~~~l~~~~~  109 (115)
                      -..+.++.|++.++
T Consensus       315 gv~~~l~~l~~EL~  328 (349)
T d1tb3a1         315 GVKEVLDILTAELH  328 (349)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            23444555555444

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.22  Score=30.48  Aligned_cols=86  Identities=22%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+.-+.++.+- . ...|.|++--.-|+.+|       ++-++++++..++.|+. ..|--+.+...+..++||+.++  
T Consensus        31 ~~g~eal~~l~-~-~~~dliilD~~mP~~~G-------~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl--   99 (119)
T d2pl1a1          31 EDAKEADYYLN-E-HIPDIAIVDLGLPDEDG-------LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYV--   99 (119)
T ss_dssp             SSHHHHHHHHH-H-SCCSEEEECSCCSSSCH-------HHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEE--
T ss_pred             CCHHHHHHHHH-h-cccceeehhccCCCchh-------HHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEEE--
Confidence            34444444433 2 46898887766787654       55677787777777755 5555666777888999999874  


Q ss_pred             ccccCCCCHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~  109 (115)
                         .+.=++.+-...++..++
T Consensus       100 ---~KP~~~~~L~~~v~~~lr  117 (119)
T d2pl1a1         100 ---TKPFHIEEVMARMQALMR  117 (119)
T ss_dssp             ---ESSCCHHHHHHHHHHHHH
T ss_pred             ---ECCCCHHHHHHHHHHHHc
Confidence               344467776667766664

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.16  Score=35.73  Aligned_cols=78  Identities=17%  Similarity=0.192  Sum_probs=56.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEee----eCCCCCcccchhHHHHHHHHHhhC--CCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTV----EPGFGGQKFMPEMMDKVRSLRNRY--PSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v----~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      .-++.++++++ .+++|.+.+.+-    .=|+.||...|+..+.++++.+..  .+++..+-.+ +++.+..+.+.|++.
T Consensus       153 ~av~nleeI~a-v~giD~i~iGp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~-~~~~~~~~~~~G~~~  230 (253)
T d1dxea_         153 QGVDNVDAIAA-TEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAP-VEADARRYLEWGATF  230 (253)
T ss_dssp             HHHHTHHHHHT-STTCCEEEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECC-SHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHhc-cCCCceEEEecCcHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecC-CHHHHHHHHHcCCCE
Confidence            34577788773 379999998764    346777776666666666554321  2677766544 899999999999999


Q ss_pred             EEEccc
Q 033625           85 IVAGSS   90 (115)
Q Consensus        85 iv~Gsa   90 (115)
                      ++.|+.
T Consensus       231 i~~g~D  236 (253)
T d1dxea_         231 VAVGSD  236 (253)
T ss_dssp             EEEEEH
T ss_pred             EEehHH
Confidence            999975

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.58  E-value=0.1  Score=38.80  Aligned_cols=78  Identities=15%  Similarity=0.260  Sum_probs=52.7

Q ss_pred             eEEEecCCC-CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC
Q 033625            3 PGVALKPGT-SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG   81 (115)
Q Consensus         3 ~Glal~p~t-~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G   81 (115)
                      +|.++.... ..+.+..+++  .++|++.|-+. -|     ......+.++++++.+++.++.+=.=.|.+....|.++|
T Consensus        98 v~aavGv~~~~~er~~~l~~--agvd~ivID~A-~G-----~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aG  169 (365)
T d1zfja1          98 VAAAVGVTSDTFERAEALFE--AGADAIVIDTA-HG-----HSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAG  169 (365)
T ss_dssp             CEEEECSSTTHHHHHHHHHH--HTCSEEEECCS-CT-----TCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTT
T ss_pred             EEEEeccCchHHHHHHHHHH--cCCCEEEEECC-cc-----cccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcC
Confidence            455665332 3455666552  47999865322 22     233455567778888888888765556889999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      ||++-+|
T Consensus       170 aD~VkVG  176 (365)
T d1zfja1         170 VDVVKVG  176 (365)
T ss_dssp             CSEEEEC
T ss_pred             CceEEee
Confidence            9999998

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=94.45  E-value=0.039  Score=40.82  Aligned_cols=51  Identities=20%  Similarity=0.245  Sum_probs=41.7

Q ss_pred             HHHHHHhhCCCCcEEEEcCCChhhHHHHHHcC-CCEEEEcccccCCCCHHHHH
Q 033625           50 KVRSLRNRYPSLDIEVDGGLGPSTIAEAASAG-ANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        50 ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~G-ad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..+.++.. .+.|+.+.||++++...++++.| +|.+.+|+.+...+|+.+.+
T Consensus       298 ~~~~ik~~-~~~pv~~~Gg~~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~  349 (380)
T d1q45a_         298 LMKSLRMA-YNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRF  349 (380)
T ss_dssp             HHHHHHHH-SCSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             HHHHHhhc-cCCcEEeCCCCCHHHHHHHHHcCCccchhhhHHHHHCccHHHHH
Confidence            34455554 36899999999999999988887 99999999999889876543

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.42  E-value=0.099  Score=32.31  Aligned_cols=89  Identities=15%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~~~Gad~iv~   87 (115)
                      ..+..+.++.+- . ...|.|++-..-|+.+|       ++-++++++..+++|+.+.-|- +.+......++||+-+  
T Consensus        33 a~~~~~a~~~l~-~-~~~dlii~D~~mp~~~G-------~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~dy--  101 (123)
T d1krwa_          33 FENGNEVLAALA-S-KTPDVLLSDIRMPGMDG-------LALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDY--  101 (123)
T ss_dssp             ESSSHHHHHHHT-T-CCCSEEEECCSSSSSTT-------HHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEEE--
T ss_pred             eCCHHHHHHHHH-h-CCCCEEEehhhcCCchH-------HHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCeE--
Confidence            345555555543 2 47899988777787655       3446677777788887665554 4566778889998765  


Q ss_pred             cccccCCCCHHHHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSVEDA  111 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~~~~  111 (115)
                         |.+.=++.+-...+++.++.+
T Consensus       102 ---l~KP~~~~eL~~~i~~~l~~~  122 (123)
T d1krwa_         102 ---LPKPFDIDEAVALVERAISHY  122 (123)
T ss_dssp             ---CSSCCHHHHHHHHHHHHHHHH
T ss_pred             ---EeCcCCHHHHHHHHHHHHHcc
Confidence               555446677777777766654

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.30  E-value=0.14  Score=38.01  Aligned_cols=67  Identities=28%  Similarity=0.443  Sum_probs=44.0

Q ss_pred             CCCCEEEEEeeeCCCC---------CcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFG---------GQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~---------gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .++|.|.| .+-||..         |.+... ......+.++.. +.||.+||||+ ...+...+.+|||.+-+||.+-+
T Consensus       168 aGaD~VkV-GiG~Gs~CTTr~~tGvGvPq~s-ai~~~~~~~~~~-~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg  244 (365)
T d1zfja1         168 AGVDVVKV-GIGPGSICTTRVVAGVGVPQVT-AIYDAAAVAREY-GKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG  244 (365)
T ss_dssp             TTCSEEEE-CSSCCTTBCHHHHTCCCCCHHH-HHHHHHHHHHHT-TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             cCCceEEe-eecccccccCcceeeeeccchh-HHHHHHHHHHhC-CceEEecCCcCcchhhhhhhhccCCEEEecchhcc
Confidence            58999876 4566631         111111 222223333333 68999999996 56777788999999999987754

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=94.12  E-value=0.4  Score=31.65  Aligned_cols=91  Identities=16%  Similarity=0.104  Sum_probs=54.2

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCChhhHHHHHHcCCCEE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLGPSTIAEAASAGANCI   85 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~~~ni~~l~~~Gad~i   85 (115)
                      +.+.+|.+.+.....+ .++|.|.+-+...++     .+..-+-++.+++. .+++++.+=|-|..+....+.+.|+|- 
T Consensus        71 lg~~~~~e~iv~aa~~-~~advI~iSs~~~~~-----~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~-  143 (168)
T d7reqa2          71 GPLFQTPEETARQAVE-ADVHVVGVSSLAGGH-----LTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVE-  143 (168)
T ss_dssp             CCTTBCHHHHHHHHHH-HTCSEEEEEECSSCH-----HHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEE-
T ss_pred             CCCcCcHHHHHHHHHc-cCCCEEEEecCcccc-----hHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCE-
Confidence            4566677666655544 589999875443331     12222334555555 345666555556889999999999764 


Q ss_pred             EEcccccCC-CCHHHHHHHHHHHHH
Q 033625           86 VAGSSVFGA-PEPAHVISLMRKSVE  109 (115)
Q Consensus        86 v~Gsaif~~-~d~~~~~~~l~~~~~  109 (115)
                           +|.. ..+.+.+..+.+.++
T Consensus       144 -----iF~pgt~~~e~a~~~~~~~~  163 (168)
T d7reqa2         144 -----IYTPGTVIPESAISLVKKLR  163 (168)
T ss_dssp             -----EECTTCCHHHHHHHHHHHHH
T ss_pred             -----EECcCCCHHHHHHHHHHHHH
Confidence                 4543 245565555555544

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.38  Score=29.90  Aligned_cols=88  Identities=14%  Similarity=0.160  Sum_probs=57.4

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEE
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      ..+..+.++-+. . ...|.|++-..-|+.+|-.       -++++|+..++.||. +.|--..+...+..+.|++-++.
T Consensus        38 a~~g~ea~~~~~-~-~~~dlillD~~mP~~dG~e-------l~~~ir~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~  108 (133)
T d2ayxa1          38 ANDGVDALNVLS-K-NHIDIVLSDVNMPNMDGYR-------LTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLS  108 (133)
T ss_dssp             ECCSHHHHHHHH-H-SCCSEEEEEESSCSSCCHH-------HHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEE
T ss_pred             ECcHHHHHHHHh-c-cCceEEEEeccCCCCCHHH-------HHHHHHHhCCCCCEEEEeccCCHHHHHHHHHcCCCEEEE
Confidence            445556665544 2 5799999888889877643       355555555677765 45656778888999999988743


Q ss_pred             cccccCCCCHHHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                           +.=++.+-...++..++.
T Consensus       109 -----KP~~~~~L~~~l~~~~~r  126 (133)
T d2ayxa1         109 -----KPVTLDVIKQTLTLYAER  126 (133)
T ss_dssp             -----SSCCHHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHH
Confidence                 333555555555555543

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=93.72  E-value=0.2  Score=36.16  Aligned_cols=94  Identities=16%  Similarity=0.222  Sum_probs=58.8

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeee----CCCC-----CcccchhHHHHHHHH---HhhCCCCcEEEEcCCChhhHHHHHH
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVE----PGFG-----GQKFMPEMMDKVRSL---RNRYPSLDIEVDGGLGPSTIAEAAS   79 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~----pG~~-----gq~~~~~~~~ki~~l---~~~~~~~~i~~dGGI~~~ni~~l~~   79 (115)
                      -++.+++++. .+++|.+.+.+.+    =|+.     |+...|+..+-++++   ++.. ++++.. +..+++.++.+.+
T Consensus       188 av~nldeI~a-v~GVD~ifiGp~DLs~slG~~~~~~~g~~~~p~v~~ai~~i~~a~k~~-Gk~~g~-~~~~~~~~~~~~~  264 (299)
T d1izca_         188 GVENVDAIAA-MPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRN-GVPIFG-GALSVDMVPSLIE  264 (299)
T ss_dssp             HHHTHHHHHT-CTTCCCEEECHHHHHHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHT-TCCEEE-ECSSGGGHHHHHH
T ss_pred             HHHHHHHHhc-cccccEEEEcchHHHhhcCCCcccccccccHHHHHHHHHHHHHHHHHc-CCcEEe-ccCCHHHHHHHHH
Confidence            4578888873 3799999997732    2332     555555555544444   3333 566544 4569999999999


Q ss_pred             cCCCEEEEcccccC-CCCHHHHHHHHHHHH
Q 033625           80 AGANCIVAGSSVFG-APEPAHVISLMRKSV  108 (115)
Q Consensus        80 ~Gad~iv~Gsaif~-~~d~~~~~~~l~~~~  108 (115)
                      .|.+.+++|+.+.- ..-..+.++++|...
T Consensus       265 ~G~~~i~~g~D~~~l~~~~~~~l~~~R~~~  294 (299)
T d1izca_         265 QGYRAIAVQFDVWGLSRLVHGSLAQARASA  294 (299)
T ss_dssp             TTEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999975321 122334444444443

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.42  Score=29.71  Aligned_cols=74  Identities=16%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-..-||.+       +++-++++|+..++.++ .+.+.-+.+......++||+.++     .+.-++.+-.+
T Consensus        47 ~~~DlvllD~~mP~~~-------G~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~~Ga~~yl-----~Kp~~~~~L~~  114 (138)
T d1a04a2          47 LDPDLILLDLNMPGMN-------GLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYL-----LKDMEPEDLLK  114 (138)
T ss_dssp             HCCSEEEEETTSTTSC-------HHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEE-----ETTCCHHHHHH
T ss_pred             cCCCEEEEecCCCCCC-------HHHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHHcCCCEEE-----ECCCCHHHHHH
Confidence            3689998877777754       56678888888777774 45666788888899999999874     45557777766


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .+++.+.
T Consensus       115 ~i~~v~~  121 (138)
T d1a04a2         115 ALHQAAA  121 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            6766554

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=93.71  E-value=0.21  Score=40.60  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc---------hhHHHHH-HHHHhh--CCCCcEEEEcCC
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDKV-RSLRNR--YPSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~---------~~~~~ki-~~l~~~--~~~~~i~~dGGI   69 (115)
                      ++|+-|.....++.+...+.. ..+|+|.|-+-.-|.+..+..         ...+... +.|.+.  +.++.+.++||+
T Consensus       573 pv~vKl~~~~~~~~i~~~v~k-a~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl  651 (771)
T d1ea0a2         573 KVTVKLVSRSGIGTIAAGVAK-ANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGL  651 (771)
T ss_dssp             EEEEEEECCTTHHHHHHHHHH-TTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSC
T ss_pred             CEEEEECCcCcHHHHHHHHHh-cCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCC
Confidence            578888888888877776643 579999988777765433221         2222222 223322  346999999998


Q ss_pred             -ChhhHHHHHHcCCCEEEEccc
Q 033625           70 -GPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        70 -~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                       +..++-.....|||.+-+|++
T Consensus       652 ~t~~Dv~ka~aLGAD~v~~gt~  673 (771)
T d1ea0a2         652 KTGRDIVIAAMLGAEEFGIGTA  673 (771)
T ss_dssp             CSHHHHHHHHHTTCSEEECCHH
T ss_pred             CCHHHHHHHHHhCCCchHHhHH
Confidence             477788888999999999865

>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase beta subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=93.71  E-value=0.049  Score=36.10  Aligned_cols=86  Identities=9%  Similarity=-0.015  Sum_probs=53.7

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      |+.+..+.+.+  .++|++.+-+...+|.     +..-+-++.|++...+..+.+-|++..++...+.++|+|.+     
T Consensus        74 ~~~e~v~aa~~--~~a~vvvicssd~~y~-----~~~~~~~~aLk~ag~~~~vlaGg~~~~~d~~~l~~aGVd~~-----  141 (163)
T d7reqb2          74 TTAEIVEAFKK--SGAQVADLCSSAKVYA-----QQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGR-----  141 (163)
T ss_dssp             CHHHHHHHHHH--HTCSEEEEECCHHHHH-----HHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHHHCCEE-----
T ss_pred             CcHHHHHHHHh--CCCCEEEEecCccchH-----HHHHHHHHHHHhcccceeEEEecCCCcccHHHHHhCCCCeE-----
Confidence            34455555442  5899887665555443     22233456666665555444444467788999999999988     


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q 033625           91 VFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        91 if~~~d~~~~~~~l~~~~  108 (115)
                      |+...|..+.++++.+.+
T Consensus       142 i~~G~d~~~~l~~l~~~l  159 (163)
T d7reqb2         142 LFMGMDVVDTLSSTLDIL  159 (163)
T ss_dssp             ECTTCCHHHHHHHHHHHT
T ss_pred             ecCCCcHHHHHHHHHHHh
Confidence            444567777777776653

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=93.57  E-value=0.095  Score=38.78  Aligned_cols=81  Identities=19%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             cCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC-------CC--cccchhHHHHHHHHHhh-----CCCCcEEEEcCCC-hh
Q 033625            8 KPGTSVEEVYPLVEGANPVEMVLVMTVEPGF-------GG--QKFMPEMMDKVRSLRNR-----YPSLDIEVDGGLG-PS   72 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~-------~g--q~~~~~~~~ki~~l~~~-----~~~~~i~~dGGI~-~~   72 (115)
                      |..|+ +..+.+++  .++|+|-| .+-||-       +|  -+... ........++.     ...+||.+||||+ ..
T Consensus       159 NVaT~-e~~~~L~~--aGaD~vkV-GIG~Gs~CTTr~~tGvG~Pq~s-Av~e~a~~~~~~~~~~~~~v~iiaDGGi~~~g  233 (362)
T d1pvna1         159 NIVDG-EGFRYLAD--AGADFIKI-GIGGGSICITREQKGIGRGQAT-AVIDVVAERNKYFEETGIYIPVCSDGGIVYDY  233 (362)
T ss_dssp             EECSH-HHHHHHHH--HTCSEEEE-CSSCSTTBCHHHHTCBCCCHHH-HHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred             cccCH-HHHHHHHH--hCCcEEEe-cccccccccchhhhccCCchHH-HHHHHHHHHHHhhhhcccCCceeeccccCccc
Confidence            44454 34445552  47999876 355653       12  12112 22222222221     3469999999996 45


Q ss_pred             hHHHHHHcCCCEEEEcccccC
Q 033625           73 TIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        73 ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      .+...+.+|||.+-+|+.+-+
T Consensus       234 di~KAla~GAd~VM~G~~lAg  254 (362)
T d1pvna1         234 HMTLALAMGADFIMLGRYFAR  254 (362)
T ss_dssp             HHHHHHHTTCSEEEESHHHHT
T ss_pred             ceeEEEEEeccceeehhhhhc
Confidence            677778999999999986643

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=93.47  E-value=0.11  Score=38.74  Aligned_cols=77  Identities=19%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             HhHHHhHhCCCCCCEEEEEeeeCCCC--Ccc---cchhHHHHHHHHHhh--CCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           14 EEVYPLVEGANPVEMVLVMTVEPGFG--GQK---FMPEMMDKVRSLRNR--YPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        14 ~~~~~~~~~~~~vD~vlvm~v~pG~~--gq~---~~~~~~~ki~~l~~~--~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      +..+.++.  .++|.|.| .+-||-.  .+.   +....+.-+....+.  ...+||.+||||+ ...+...+.+|||.+
T Consensus       204 e~a~~L~~--~GaD~VkV-GiGpGs~CtTr~~~GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~V  280 (388)
T d1eepa_         204 EAALDLIS--VGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSV  280 (388)
T ss_dssp             HHHHHHHT--TTCSEEEE-CSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHh--cCCCeeee-ccccccccccccccccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEEecccee
Confidence            34444451  57999976 3666631  110   111122222222211  2369999999996 566777889999999


Q ss_pred             EEcccccC
Q 033625           86 VAGSSVFG   93 (115)
Q Consensus        86 v~Gsaif~   93 (115)
                      -+||.+-+
T Consensus       281 MlG~~lAg  288 (388)
T d1eepa_         281 MIGNLFAG  288 (388)
T ss_dssp             EECHHHHT
T ss_pred             ecchhhhc
Confidence            99987654

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=93.37  E-value=0.35  Score=35.18  Aligned_cols=78  Identities=12%  Similarity=0.199  Sum_probs=53.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHH-HHHcCCCEEEEccccc-CCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAE-AASAGANCIVAGSSVF-GAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~-l~~~Gad~iv~Gsaif-~~~d~~~~  100 (115)
                      .++--|++=.+.-.-..+.+.-+.   ++++++.. ++|+.+.||++ .+.+.+ +...+++.+++|++++ +.-++.+.
T Consensus       232 ~G~GEIlltdIdrDGt~~G~D~el---~~~i~~~~-~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~el  307 (323)
T d1jvna1         232 LGAGEILLNCIDKDGSNSGYDLEL---IEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDV  307 (323)
T ss_dssp             TTCCEEEECCGGGTTTCSCCCHHH---HHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHH
T ss_pred             cCcceeEEEeecccccccccchhH---HHHHHHhC-CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCCCHHHH
Confidence            467788887777654555555555   44555543 69999999996 677766 4567899999999975 44565554


Q ss_pred             HHHHH
Q 033625          101 ISLMR  105 (115)
Q Consensus       101 ~~~l~  105 (115)
                      -+.|+
T Consensus       308 K~~L~  312 (323)
T d1jvna1         308 KEYLL  312 (323)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.31  E-value=0.13  Score=38.07  Aligned_cols=69  Identities=26%  Similarity=0.326  Sum_probs=43.5

Q ss_pred             CCCCEEEEEeeeCCCCC--c---ccchhHHHHHHHHHhh--CCCCcEEEEcCCChh-hHHHHHHcCCCEEEEcccccC
Q 033625           24 NPVEMVLVMTVEPGFGG--Q---KFMPEMMDKVRSLRNR--YPSLDIEVDGGLGPS-TIAEAASAGANCIVAGSSVFG   93 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~g--q---~~~~~~~~ki~~l~~~--~~~~~i~~dGGI~~~-ni~~l~~~Gad~iv~Gsaif~   93 (115)
                      -.+|.|-| .+-||..-  +   -+....+.-+.+..+.  ..+.||.+||||+-. .+..-+.+|||.+.+||.+-+
T Consensus       174 ~gaD~VkV-GIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg  250 (368)
T d2cu0a1         174 TFADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG  250 (368)
T ss_dssp             TTSSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             hcCcceee-cccCcccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhcc
Confidence            57899876 46776410  0   0111122222222211  125899999999865 888888999999999987654

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=93.30  E-value=0.25  Score=35.39  Aligned_cols=75  Identities=17%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             HHHhHhCCCCCCEEEEEeeeCCCCCcccc-hhHHHHHHHHHhhCCCCcEEEEcCC-ChhhHHHHH-HcCCCEEEEccccc
Q 033625           16 VYPLVEGANPVEMVLVMTVEPGFGGQKFM-PEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAA-SAGANCIVAGSSVF   92 (115)
Q Consensus        16 ~~~~~~~~~~vD~vlvm~v~pG~~gq~~~-~~~~~ki~~l~~~~~~~~i~~dGGI-~~~ni~~l~-~~Gad~iv~Gsaif   92 (115)
                      +...+++ .++|.+.   ||+-...|.+. +.-++.|.++   ..++|+.+-||| +.+.+..+. ++|+|.+-+|++.+
T Consensus       141 ~~~~l~~-~G~~~it---vH~Rt~~q~~~~~a~~~~i~~~---~~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal  213 (305)
T d1vhna_         141 IYRILVE-EGVDEVF---IHTRTVVQSFTGRAEWKALSVL---EKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAI  213 (305)
T ss_dssp             HHHHHHH-TTCCEEE---EESSCTTTTTSSCCCGGGGGGS---CCSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGT
T ss_pred             HHHHHHH-hCCcEEE---echhhhhhccccchhhhHHHhh---hhhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHH
Confidence            3344444 5899885   78876666553 2223334433   347999999999 678888765 57999999999988


Q ss_pred             CCCCH
Q 033625           93 GAPEP   97 (115)
Q Consensus        93 ~~~d~   97 (115)
                      ..|-.
T Consensus       214 ~nP~i  218 (305)
T d1vhna_         214 GRPWI  218 (305)
T ss_dssp             TCTTH
T ss_pred             HhhhH
Confidence            76644

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.12  E-value=0.48  Score=28.73  Aligned_cols=86  Identities=12%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.++.+.+  ...|.|++--.-|+.+|       ++.++++++..+..|+. +.|--+.++.....++||+-+   
T Consensus        33 ~~~~~al~~l~~--~~~dlillD~~mp~~~G-------~~~~~~~r~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~y---  100 (121)
T d1mvoa_          33 SDGEEALKKAET--EKPDLIVLDVMLPKLDG-------IEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDY---  100 (121)
T ss_dssp             SSHHHHHHHHHH--HCCSEEEEESSCSSSCH-------HHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEE---
T ss_pred             CCHHHHHHHHhc--ccccEEEecccccCCCC-------chhhhhhhccCCCCEEEEEEeeCCHHHHHHHHHCCCCEE---
Confidence            344455554442  47899988777788665       34466677766666654 566667777888899999976   


Q ss_pred             ccccCCCCHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~  109 (115)
                        |.+.=++.+-...+++.++
T Consensus       101 --l~KP~~~~~L~~~i~~~lr  119 (121)
T d1mvoa_         101 --MTKPFSPREVNARVKAILR  119 (121)
T ss_dssp             --EESSCCHHHHHHHHHHHHH
T ss_pred             --EECCCCHHHHHHHHHHHHc
Confidence              4454477776666666654

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.06  E-value=0.33  Score=29.73  Aligned_cols=87  Identities=11%  Similarity=0.089  Sum_probs=59.7

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.++.+- . ...|.|++-..-|+..       .++-++++|+..+++||. +.|--+.++.....++||+-+   
T Consensus        32 ~~~~eal~~~~-~-~~~dlvl~D~~mP~~~-------G~el~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dy---   99 (121)
T d1ys7a2          32 VDGAEALRSAT-E-NRPDAIVLDINMPVLD-------GVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDY---   99 (121)
T ss_dssp             SSHHHHHHHHH-H-SCCSEEEEESSCSSSC-------HHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEE---
T ss_pred             CCHHHHHHHHH-h-CCCCEEEEEeeccCcc-------cHHHHHHHHhcCCCCEEEEEEeeCCHHHHHHHHHCCCCEE---
Confidence            44455555544 2 5789988876678754       455677777777788855 466667777778889999987   


Q ss_pred             ccccCCCCHHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~~  110 (115)
                        |.+.=++.+-...+++.+++
T Consensus       100 --l~KP~~~~~L~~~i~~~l~r  119 (121)
T d1ys7a2         100 --LVKPFVLAELVARVKALLRR  119 (121)
T ss_dssp             --EESSCCHHHHHHHHHHHHHH
T ss_pred             --EECCCCHHHHHHHHHHHHHc
Confidence              44544777777777777654

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.52  E-value=0.6  Score=28.19  Aligned_cols=85  Identities=11%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.++.+- . ...|.|++-..-||.+|       ++.++++++. +++|+. +.|.-+.++.....++||+-++  
T Consensus        31 ~~~~eal~~~~-~-~~~dlillD~~mp~~~G-------~~~~~~i~~~-~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l--   98 (117)
T d2a9pa1          31 FNGREALEQFE-A-EQPDIIILDLMLPEIDG-------LEVAKTIRKT-SSVPILMLSAKDSEFDKVIGLELGADDYV--   98 (117)
T ss_dssp             SSHHHHHHHHH-H-HCCSEEEECSSCSSSCH-------HHHHHHHHTT-CCCCEEEEESCCSHHHHHHHHHHTCSEEE--
T ss_pred             CCHHHHHHHHH-h-cCCCEEEeccccCCCCc-------cHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHHcCCCEEE--
Confidence            34445555443 2 46899987766788665       3456666664 467754 5677777778888999999874  


Q ss_pred             ccccCCCCHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~  109 (115)
                         .+.=++.+-...+++.++
T Consensus        99 ---~KP~~~~~L~~~i~~~lr  116 (117)
T d2a9pa1          99 ---TKPFSNRELQARVKALLR  116 (117)
T ss_dssp             ---ESSCCHHHHHHHHHHHHH
T ss_pred             ---ECCCCHHHHHHHHHHHhC
Confidence               343366666666665553

>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate-nucleotide pyrophosphorylase PF1904
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.50  E-value=0.094  Score=37.38  Aligned_cols=67  Identities=24%  Similarity=0.314  Sum_probs=44.4

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHh-h-CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCCC
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN-R-YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP   95 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~-~-~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~   95 (115)
                      .++.|.+.+..|-.+.   ......++++.-+ . ++++.|++.|||++++|..+.+. +|.|-+|+.+...+
T Consensus       118 ~~~gvRlDSg~p~~gd---l~~l~~~~r~~ld~~G~~~v~IiaSgglde~~I~~l~~~-iD~fGvGt~l~t~~  186 (279)
T d2i14a1         118 KLFAVRLDTPSSRRGN---FRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDV-VDAFGVGGAIASAK  186 (279)
T ss_dssp             GCCEEEECCCTTTCSC---HHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGG-CSEEEECHHHHTCC
T ss_pred             hhccccccccCcchhh---HHHHHHHHHHHhhhcCCCceEEEEeCCCCHHHHHHHHhc-ccEeccccccccCC
Confidence            4677776666553211   1222223332211 1 46899999999999999999765 99999999887554

>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methionine synthase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.41  Score=31.12  Aligned_cols=74  Identities=8%  Similarity=0.130  Sum_probs=46.0

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHH----cC
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAAS----AG   81 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~----~G   81 (115)
                      =|.+++|.+.+.+.+.+ ..+|.|.+-+.-+.     -.+...+-++.+++..++.++.+-||.-.+.......    .|
T Consensus        39 ~LG~~~p~e~~~~~~~~-~~~d~i~lS~l~~~-----~~~~~~~~~~~l~~~g~~~~vivGG~~~~~~~~~~~~~~~y~g  112 (156)
T d3bula2          39 DLGVMVPAEKILRTAKE-VNADLIGLSGLITP-----SLDEMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSG  112 (156)
T ss_dssp             ECCSSBCHHHHHHHHHH-HTCSEEEEECCSTH-----HHHHHHHHHHHHHHTTCCSCEEEESTTCCHHHHHHHTGGGCSS
T ss_pred             ECCCCCCHHHHHHHHHh-hCCCEEEEeccccc-----chHHHHHHHHHHHhccccceEEEecccccchHHHhhhcccccc
Confidence            46788899887777755 57999976544332     2234444566667766778887777655444444322    36


Q ss_pred             CCEE
Q 033625           82 ANCI   85 (115)
Q Consensus        82 ad~i   85 (115)
                      +|+.
T Consensus       113 ad~y  116 (156)
T d3bula2         113 PTVY  116 (156)
T ss_dssp             CEEE
T ss_pred             ceee
Confidence            6654

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=0.31  Score=36.15  Aligned_cols=67  Identities=21%  Similarity=0.279  Sum_probs=42.9

Q ss_pred             CCCCEEEEEeeeCCCCCcccch---hHHHHHHHHHh---hCCCCcEEEEcCCCh-hhHHHHHHcCCCEEEEccccc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMP---EMMDKVRSLRN---RYPSLDIEVDGGLGP-STIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~---~~~~ki~~l~~---~~~~~~i~~dGGI~~-~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .++|.+.+  .+.|....+..+   ..+..+..+.+   ..++++|.+||||+- -.+-..+..|||.+-+|..+.
T Consensus       266 ~G~~~i~v--snhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L  339 (414)
T d1kbia1         266 IGVSGVVL--SNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL  339 (414)
T ss_dssp             TTCSEEEE--CCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             cCCcceee--ccccccccccccccccchhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            57888764  455544333333   33333443322   235799999999974 356666799999999997643

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=92.42  E-value=0.65  Score=28.33  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.++ ++.. ...|.|++----|+.+       +++-++++++..++.|+. +.|--+.+...+..++||+-++   
T Consensus        35 ~~~~al~-~~~~-~~~dlvi~D~~mp~~~-------G~e~~~~lr~~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl---  102 (123)
T d1dbwa_          35 SAEAFLA-FAPD-VRNGVLVTDLRMPDMS-------GVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFI---  102 (123)
T ss_dssp             CHHHHHH-HGGG-CCSEEEEEECCSTTSC-------HHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSEEE---
T ss_pred             CHHHHHH-HHhh-cCCcEEEEeccCcccc-------chHHHHHHHhcCCCCeEEEEEeeCCHHHHHHHHHCCCCEEE---
Confidence            3334444 3433 4688888766668755       445577777777777755 5566667888889999999874   


Q ss_pred             cccCCCCHHHHHHHHHHHHH
Q 033625           90 SVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        90 aif~~~d~~~~~~~l~~~~~  109 (115)
                        .+.=++.+-...+++.++
T Consensus       103 --~KP~~~~~L~~~i~~a~e  120 (123)
T d1dbwa_         103 --EKPFEDTVIIEAIERASE  120 (123)
T ss_dssp             --ESSCCHHHHHHHHHHHHT
T ss_pred             --ECCCCHHHHHHHHHHHHH
Confidence              354466665555655443

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.39  E-value=0.45  Score=34.27  Aligned_cols=84  Identities=19%  Similarity=0.353  Sum_probs=53.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEEcccc-cC-----CC
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSV-FG-----AP   95 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsai-f~-----~~   95 (115)
                      .+.|.+.+  .+-|...-..-+.+.+.+..+++.. ++++|.+||||+ .-.+-..+..|||.+-+|..+ +.     .+
T Consensus       244 ~g~~~~~v--snhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~  321 (359)
T d1goxa_         244 HGAAGIIV--SNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEA  321 (359)
T ss_dssp             TTCSEEEE--CCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHH
T ss_pred             ccccceec--ccccccccccccchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHH
Confidence            46776653  3444444444556666666666553 479999999997 445666779999999999764 33     12


Q ss_pred             CHHHHHHHHHHHHH
Q 033625           96 EPAHVISLMRKSVE  109 (115)
Q Consensus        96 d~~~~~~~l~~~~~  109 (115)
                      -..+.++.|++.++
T Consensus       322 gv~~~i~~l~~EL~  335 (359)
T d1goxa_         322 GVKKVLQMMRDEFE  335 (359)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            23444555554443

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.34  E-value=0.71  Score=28.63  Aligned_cols=85  Identities=18%  Similarity=0.223  Sum_probs=56.2

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .++.+.++.+- . ..+|.|++--.-|+.+|       ++-++++++..+++|+. +.|--+.++.....++||+-++. 
T Consensus        31 ~~~~eAl~~l~-~-~~~dlvilD~~mp~~~G-------~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~-  100 (137)
T d1ny5a1          31 ERGKEAYKLLS-E-KHFNVVLLDLLLPDVNG-------LEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLT-  100 (137)
T ss_dssp             SSHHHHHHHHH-H-SCCSEEEEESBCSSSBH-------HHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEE-
T ss_pred             CCHHHHHHHhh-c-cccccchHHHhhhhhhH-------HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe-
Confidence            44455555543 2 57999998877788665       34566677777888855 55666788888999999998865 


Q ss_pred             ccccCCCCHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~  108 (115)
                          +.-++.+-...++..+
T Consensus       101 ----KP~~~~~L~~~i~~~l  116 (137)
T d1ny5a1         101 ----KPCMLEEIELTINKAI  116 (137)
T ss_dssp             ----ESCCHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHH
Confidence                3334444444444433

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=91.65  E-value=0.89  Score=28.29  Aligned_cols=74  Identities=19%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++--.-|+.+|       ++-++++++..+++|+.+ .|--+.+...+..++||+-++.     +.-++.+-..
T Consensus        43 ~~~dlil~D~~mP~~~G-------~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~-----KP~~~~~L~~  110 (140)
T d1qkka_          43 DFAGIVISDIRMPGMDG-------LALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA-----KPFAADRLVQ  110 (140)
T ss_dssp             TCCSEEEEESCCSSSCH-------HHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEE-----SSCCHHHHHH
T ss_pred             cCcchHHHhhccCCCCH-------HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEeec-----CCCCHHHHHH
Confidence            47899888766787654       445677777778888654 5555677778889999998855     3335554444


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .+++.++
T Consensus       111 ~i~~~~~  117 (140)
T d1qkka_         111 SARRAEE  117 (140)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4554443

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.51  E-value=0.61  Score=28.34  Aligned_cols=86  Identities=14%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcC-CChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGG-LGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG-I~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.++.+. . ...|.|++-..-|+..|       ++-++++|+..+..|+.+.-+ -+.+...+..++||+-++.  
T Consensus        33 ~~~~al~~l~-~-~~~dlillD~~mp~~~g-------~~~~~~lr~~~~~~piI~lt~~~~~~~~~~~~~~Ga~~yl~--  101 (122)
T d1kgsa2          33 DGEEGMYMAL-N-EPFDVVILDIMLPVHDG-------WEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLP--  101 (122)
T ss_dssp             SHHHHHHHHH-H-SCCSEEEEESCCSSSCH-------HHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEE--
T ss_pred             chHHHHHHHH-h-hCccccccccccccchh-------HHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHcCCceeec--
Confidence            3444555444 2 57899988777787654       445666776666777665544 4456666788999998744  


Q ss_pred             cccCCCCHHHHHHHHHHHHHH
Q 033625           90 SVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        90 aif~~~d~~~~~~~l~~~~~~  110 (115)
                         +.=++.+-...+++.+++
T Consensus       102 ---KP~~~~~L~~~i~~~l~r  119 (122)
T d1kgsa2         102 ---KPFDLRELIARVRALIRR  119 (122)
T ss_dssp             ---SSCCHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHH
Confidence               544777777777777654

>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Nicotinate phosphoribosyltransferase Ta1145
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=91.32  E-value=0.18  Score=35.80  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=33.4

Q ss_pred             CCCCcEEEEcCCChhhHHHHHHcCCCEEEEcccccCC
Q 033625           58 YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGA   94 (115)
Q Consensus        58 ~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~   94 (115)
                      ++++.|.+.+|++++.|..+.++++|.|=+|+.+...
T Consensus       143 ~~~vkIi~S~glde~~I~~l~~~~~d~fGvGt~Lvt~  179 (270)
T d1ytda1         143 RSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA  179 (270)
T ss_dssp             CTTSEEEEESSCCHHHHHHHHHHTCCEEEECHHHHTC
T ss_pred             CCcceEEECCCCCHHHHHHHHhcCCceEeeccccccC
Confidence            3688999999999999999999999999999988654

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.19  E-value=0.2  Score=35.94  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCC-hhhHHHHHHcCCCEEEEccccc
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLG-PSTIAEAASAGANCIVAGSSVF   92 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~Gsaif   92 (115)
                      .++|.+.+  -+.|...-...+.+.+-+.+++.. .+.+|.+||||+ .-.+-..+..|||.+-+|..+.
T Consensus       242 ~g~~~~~~--s~~gg~~~~~~~~~~~~l~~i~~~-~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L  308 (353)
T d1p4ca_         242 EGADGVIL--SNHGGRQLDCAISPMEVLAQSVAK-TGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATL  308 (353)
T ss_dssp             TTCSEEEE--CCGGGTSCTTCCCGGGTHHHHHHH-HCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHH
T ss_pred             cCCchhhh--cccccccccccccchhcccchhcc-cccceeecCCcCchHHHHHHHHcCCCEEEEcHHHH
Confidence            56777654  334433333333344444444433 368999999995 5566677799999999997643

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.08  E-value=0.29  Score=34.69  Aligned_cols=52  Identities=21%  Similarity=0.438  Sum_probs=36.2

Q ss_pred             CCc-EEEEcCCChhhHHH----HHHcCCCEEEEcccccCC----CCH--------HHHHHHHHHHHHHH
Q 033625           60 SLD-IEVDGGLGPSTIAE----AASAGANCIVAGSSVFGA----PEP--------AHVISLMRKSVEDA  111 (115)
Q Consensus        60 ~~~-i~~dGGI~~~ni~~----l~~~Gad~iv~Gsaif~~----~d~--------~~~~~~l~~~~~~~  111 (115)
                      ..| +..-||.+.+.+..    ..++|+.+|++|+.||+.    +++        .+.+++|.++++++
T Consensus       219 ~~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~~~~~~~~~l~~~~~~~l~~l~~i~~~~  287 (291)
T d1to3a_         219 NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPKLQRLGEIVDEM  287 (291)
T ss_dssp             CSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCSCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChhhhhCcccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456 55668888877765    466999999999999974    333        34555566666653

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.07  E-value=0.59  Score=28.84  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ...|.|++-..-|+.+|       ++-++++|+. .++.|| ...|--+.+...+..++|+|.+     |.+.=++.+-.
T Consensus        50 ~~~dlillD~~mP~~dG-------~el~~~ir~~~~~~~piI~lT~~~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~  117 (128)
T d2r25b1          50 ENYNMIFMDVQMPKVDG-------LLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGF-----LSKPIKRPKLK  117 (128)
T ss_dssp             CCCSEEEECSCCSSSCH-------HHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEE-----EESSCCHHHHH
T ss_pred             CCCCEEEEEeCCCCCCH-------HHHHHHHHHccCCCCeEEEEECCCCHHHHHHHHHcCCCEE-----EECCCCHHHHH
Confidence            57899988777788665       4456666543 345664 5678888999999999999987     33433555444


Q ss_pred             HHHHHH
Q 033625          102 SLMRKS  107 (115)
Q Consensus       102 ~~l~~~  107 (115)
                      ..+++.
T Consensus       118 ~~l~~~  123 (128)
T d2r25b1         118 TILTEF  123 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.90  E-value=0.42  Score=35.16  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=49.6

Q ss_pred             cCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCCh
Q 033625            8 KPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLGP   71 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~~   71 (115)
                      +|...-|.+.+...| ..++|+++   |.||..       -++-|+++++..+++|+.+               -|-+++
T Consensus       238 d~~n~~eAl~e~~~D~~EGAD~lM---VKPa~~-------yLDii~~~k~~~~~~Pv~aYqVSGEYami~~aa~~G~~d~  307 (340)
T d1h7na_         238 PPAGRGLARRALERDMSEGADGII---VKPSTF-------YLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDL  307 (340)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSEEE---EESSGG-------GHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSSCH
T ss_pred             CchhhHHHHHHHHHHHhcCCCeEE---ecchHH-------HHHHHHHHHHhCCCCCEEEEEchHHHHHHHHHHHCCCCcH
Confidence            455555555554433 26899997   789833       4566888888776788765               466764


Q ss_pred             -----hhHHHHHHcCCCEEEEc
Q 033625           72 -----STIAEAASAGANCIVAG   88 (115)
Q Consensus        72 -----~ni~~l~~~Gad~iv~G   88 (115)
                           |.+..++.+|||+|+.=
T Consensus       308 ~~~~~E~l~~~kRAGAd~IiTY  329 (340)
T d1h7na_         308 KTIAFESHQGFLRAGARLIITY  329 (340)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHHHHHHhcCCCEEEeh
Confidence                 56677899999999764

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=90.56  E-value=1.2  Score=31.56  Aligned_cols=83  Identities=23%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             CCCCEEEEEeeeCCCCCc-ccc-hhHHHHHHHHHhh----CCCCcEEEEcCCChhhHHHH-HHcC-CCEEE-EcccccCC
Q 033625           24 NPVEMVLVMTVEPGFGGQ-KFM-PEMMDKVRSLRNR----YPSLDIEVDGGLGPSTIAEA-ASAG-ANCIV-AGSSVFGA   94 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq-~~~-~~~~~ki~~l~~~----~~~~~i~~dGGI~~~ni~~l-~~~G-ad~iv-~Gsaif~~   94 (115)
                      .++|.+.+.    ++.|. .+. ++.++...++++-    .+-+|+ ..||+++..++.+ ...| .|++. +|.+|+..
T Consensus       169 aGaD~ih~~----~~gg~~~~~~e~~~~~~~~~~~~~~~~k~~~Pv-~sGG~~~~~vp~~~~~~G~~Dvil~aGGGi~gH  243 (283)
T d1ykwa1         169 AGLDAVIMP----GFGDRVMTPEEEVLENVIECTKPMGRIKPCLPV-PGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGH  243 (283)
T ss_dssp             HTCSEEEEE----CSSTTSSSCHHHHHHHHHHHHSCCTTCCCCEEE-EECSBCTTTHHHHHHHHCSSCSEECBSSSSSSC
T ss_pred             cCCCceeec----CCcccccCchHHHHHHHHHhcCcccccCCceee-ccCCcchhhhHHHHHhcCCceEEEecCcccccC
Confidence            489998654    44432 222 2233333344331    223555 7999999999986 4688 58776 57889998


Q ss_pred             CC-HHHHHHHHHHHHHHH
Q 033625           95 PE-PAHVISLMRKSVEDA  111 (115)
Q Consensus        95 ~d-~~~~~~~l~~~~~~~  111 (115)
                      +| +++-++.+|+.++.+
T Consensus       244 P~G~~aGa~A~rqA~ea~  261 (283)
T d1ykwa1         244 PMGPKAGAKSIRQAWEAI  261 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHH
Confidence            75 888888999887743

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=89.89  E-value=1.2  Score=26.83  Aligned_cols=83  Identities=13%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.++.+- . ...|.|++-..-||.+|       ++-++++|+..++.|+.+ .|--+.+......++||+.++. 
T Consensus        32 ~~g~eal~~~~-~-~~~dlillD~~mP~~~G-------~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~-  101 (119)
T d1peya_          32 ANGLQALDIVT-K-ERPDLVLLDMKIPGMDG-------IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFA-  101 (119)
T ss_dssp             SSHHHHHHHHH-H-HCCSEEEEESCCTTCCH-------HHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTTCCEEEE-
T ss_pred             CCHHHHHHHHH-h-CCCCEEEEeccCCCCCH-------HHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCCCCEEEE-
Confidence            34445555443 2 36899988777788664       455677777777888665 4555778888899999998743 


Q ss_pred             ccccCCCCHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~  106 (115)
                          +.=++.+-...+++
T Consensus       102 ----KP~~~~~L~~~v~~  115 (119)
T d1peya_         102 ----KPFDIDEIRDAVKK  115 (119)
T ss_dssp             ----SSCCHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHH
Confidence                44455555444444

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=89.13  E-value=1.4  Score=26.49  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      ++..+.++.+-+  ...|.|++----|+.+       .++-++++++..+++|+.+ .|--+.+...+..++||+.++  
T Consensus        33 ~~~~~al~~~~~--~~~dliilD~~mp~~~-------G~e~~~~ir~~~~~~pvi~ls~~~~~~~~~~a~~~Ga~~yl--  101 (118)
T d1u0sy_          33 TNGREAVEKYKE--LKPDIVTMDITMPEMN-------GIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFI--  101 (118)
T ss_dssp             SSHHHHHHHHHH--HCCSEEEEECSCGGGC-------HHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEE--
T ss_pred             CCHHHHHHHHHh--ccCCEEEEecCCCCCC-------HHHHHHHHHHhCCCCcEEEEEccCCHHHHHHHHHcCCCEEE--
Confidence            445555555442  4689998876667744       5566777877778888554 555677788889999999874  


Q ss_pred             ccccCCCCHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMR  105 (115)
Q Consensus        89 saif~~~d~~~~~~~l~  105 (115)
                         .+.=++.+-.+.++
T Consensus       102 ---~KP~~~~~L~~~l~  115 (118)
T d1u0sy_         102 ---VKPFQPSRVVEALN  115 (118)
T ss_dssp             ---ESSCCHHHHHHHHH
T ss_pred             ---ECCCCHHHHHHHHH
Confidence               44445555555554

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=88.33  E-value=1.8  Score=26.76  Aligned_cols=75  Identities=9%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.|++-.--|+.+|       ++-++++|+..  +++|+ ...+--+.++..+..++||+-++.     +.-++.+-.
T Consensus        55 ~pdlillD~~mP~~dG-------~el~~~ir~~~~~~~iPvI~ls~~~~~~~~~~a~~~Ga~~yl~-----KP~~~~~L~  122 (140)
T d1k68a_          55 RPDLILLDLNLPKKDG-------REVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYIT-----KSANLSQLF  122 (140)
T ss_dssp             CCSEEEECSSCSSSCH-------HHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHH
T ss_pred             CCCEEEEeeccccccC-------hHHHHHHHhCcccCCCcEEEEeCCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHH
Confidence            4688887666687655       45566666532  35664 566667888899999999997743     544677766


Q ss_pred             HHHHHHHHHH
Q 033625          102 SLMRKSVEDA  111 (115)
Q Consensus       102 ~~l~~~~~~~  111 (115)
                      ..++++.+.+
T Consensus       123 ~~i~~i~~~~  132 (140)
T d1k68a_         123 QIVKGIEEFW  132 (140)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777665544

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.19  E-value=1.7  Score=26.23  Aligned_cols=86  Identities=17%  Similarity=0.189  Sum_probs=57.3

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEE-EEcCCChhhHHHHHHcCCCEEEEc
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE-VDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      .+..+.++.+.+  ...|.|++-.--|+.+|       ++-++++++. +++|+. +.|--+.++.....++||+-++  
T Consensus        33 ~~~~~al~~l~~--~~~dlii~D~~mp~~~G-------~~~~~~~r~~-~~~pii~lt~~~~~~~~~~a~~~Ga~dyl--  100 (121)
T d1xhfa1          33 TDGAEMHQILSE--YDINLVIMDINLPGKNG-------LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYI--  100 (121)
T ss_dssp             SSHHHHHHHHHH--SCCSEEEECSSCSSSCH-------HHHHHHHHHH-CCCEEEEEESCCSHHHHHHHHHHTCSEEE--
T ss_pred             CChHHHHHHHHh--cCCCEEEeecccCCccC-------cHHHHHHHhc-CCCcEEEEECCCCHHHHHHHHHcCCCEEE--
Confidence            344555555542  57899987766677665       3345555554 578855 4566677777888999999874  


Q ss_pred             ccccCCCCHHHHHHHHHHHHHH
Q 033625           89 SSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        89 saif~~~d~~~~~~~l~~~~~~  110 (115)
                         .+.=++.+-...+++.+++
T Consensus       101 ---~KP~~~~~L~~~v~~~l~R  119 (121)
T d1xhfa1         101 ---TKPFNPRELTIRARNLLSR  119 (121)
T ss_dssp             ---ESSCCHHHHHHHHHHHHHH
T ss_pred             ---eCCCCHHHHHHHHHHHHhc
Confidence               4544777777777777653

>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TTHA0625-like
domain: Hypothetical protein TTHA0625
species: Thermus thermophilus [TaxId: 274]

Probab=88.12  E-value=0.28  Score=34.76  Aligned_cols=50  Identities=20%  Similarity=0.379  Sum_probs=38.0

Q ss_pred             HHHHHHHhhCCCCcEEEE--------cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           49 DKVRSLRNRYPSLDIEVD--------GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        49 ~ki~~l~~~~~~~~i~~d--------GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      +.|.++++.+   .+++.        -|||++...+|.++|+|++-+|--+|..+++.+.+
T Consensus        20 ~~Lp~Lk~~~---DfVIaNgENaa~G~Git~k~~~~L~~~GVDvIT~GNH~wdkkei~~~i   77 (252)
T d2z06a1          20 LHLPDIRDRY---DLVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALL   77 (252)
T ss_dssp             HHHHHHGGGC---SEEEEECTTTTTTSSCCHHHHHHHHHHTCCEEECCTTTTSCTTHHHHH
T ss_pred             HHhHHHHhhC---CEEEEeeeccCCCcCCCHHHHHHHHHhCCCEEEcCcccccchhhhhhh
Confidence            3455666553   34433        28999999999999999999999999888775543

>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.75  Score=33.50  Aligned_cols=72  Identities=25%  Similarity=0.476  Sum_probs=50.5

Q ss_pred             ecCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCC
Q 033625            7 LKPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLG   70 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~   70 (115)
                      ++|...-|.+.+...| ..++|+++   |.||..       -++-|+++++.++++|+.+               -|-++
T Consensus       216 md~~n~~eA~~e~~~D~~EGAD~lM---VKPa~~-------yLDiI~~~k~~~~~~Pv~aYqVSGEYami~aa~~~g~~d  285 (320)
T d1pv8a_         216 LPPGARGLALRAVDRDVREGADMLM---VKPGMP-------YLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFD  285 (320)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCSBEE---EESCGG-------GHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred             eCcchhHHHHHHHHHHHhcCCceEe---eehhHH-------HHHHHHHHHhhCCCCCEEEEEccHHHHHHHHHHHCCCCc
Confidence            4566666666665544 25899997   788733       5667888888776788765               35555


Q ss_pred             h-----hhHHHHHHcCCCEEEEc
Q 033625           71 P-----STIAEAASAGANCIVAG   88 (115)
Q Consensus        71 ~-----~ni~~l~~~Gad~iv~G   88 (115)
                      +     |.+..++.+|||.|+.=
T Consensus       286 ~~~~~~E~l~~~kRAGAd~IitY  308 (320)
T d1pv8a_         286 LKAAVLEAMTAFRRAGADIIITY  308 (320)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEET
T ss_pred             hHHHHHHHHHHHHhcCCCEEEEh
Confidence            3     56677899999998764

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=1.7  Score=26.08  Aligned_cols=85  Identities=15%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCc-EEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLD-IEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~-i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..+.++.+- . ...|.|++----|+.+|       ++-++++|+.. +.| |.+.+.-+.++..+..+.||+-+    
T Consensus        32 ~~~eal~~l~-~-~~~dliilD~~mP~~~G-------~e~~~~ir~~~-~~piI~lt~~~~~~~~~~a~~~Ga~dy----   97 (119)
T d1zh2a1          32 TLQRGLLEAA-T-RKPDLIILDLGLPDGDG-------IEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDY----   97 (119)
T ss_dssp             SHHHHHHHHH-H-HCCSEEEEESEETTEEH-------HHHHHHHHTTC-CCCEEEEESCCSHHHHHHHHHHTCSEE----
T ss_pred             CHHHHHHHHH-h-cCCCEEEeccccCCCCC-------chHHHHHHhcc-CCcEEEEeccCCHHHHHHHHHcCCCEE----
Confidence            3344444443 2 46899988777787554       44566666653 455 55667777788888899999977    


Q ss_pred             cccCCCCHHHHHHHHHHHHHH
Q 033625           90 SVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        90 aif~~~d~~~~~~~l~~~~~~  110 (115)
                       |.+.=++.+-...+++.+++
T Consensus        98 -l~KP~~~~~L~~~i~~~lrr  117 (119)
T d1zh2a1          98 -LSKPFGIGELQARLRVALRR  117 (119)
T ss_dssp             -EESSCCHHHHHHHHHHHHHH
T ss_pred             -EECCCCHHHHHHHHHHHHhh
Confidence             44544777777777777654

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=87.93  E-value=1.5  Score=35.56  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             ceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccc---------hhHHHHHH-HHHhh--CCCCcEEEEcCC
Q 033625            2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFM---------PEMMDKVR-SLRNR--YPSLDIEVDGGL   69 (115)
Q Consensus         2 k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~---------~~~~~ki~-~l~~~--~~~~~i~~dGGI   69 (115)
                      ++|+=|.....+..+..-+.. ..+|+|.|-.-+-|.+..+..         ...+.+.. .|.+.  +.++.+.++||+
T Consensus       600 pv~vKl~~~~g~~~ia~~vak-a~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl  678 (809)
T d1ofda2         600 QVSVKLVAEIGIGTIAAGVAK-ANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGL  678 (809)
T ss_dssp             EEEEEEECSTTHHHHHHHHHH-TTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSC
T ss_pred             ceEEEEeeecChHHHHHHHhh-cCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHHHcCCCCceEEEEeCCC
Confidence            467777777777766665533 478999987776665433221         22333332 22222  346999999998


Q ss_pred             C-hhhHHHHHHcCCCEEEEccc
Q 033625           70 G-PSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        70 ~-~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      . ...+-.....|||.+-+|++
T Consensus       679 ~t~~Dv~ka~aLGAD~v~~gt~  700 (809)
T d1ofda2         679 KTGWDVVMAALMGAEEYGFGSI  700 (809)
T ss_dssp             CSHHHHHHHHHTTCSEEECSHH
T ss_pred             CCHHHHHHHHHhCCCchhHhHH
Confidence            4 56677778999999999855

>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.76  E-value=0.59  Score=33.86  Aligned_cols=48  Identities=25%  Similarity=0.410  Sum_probs=40.1

Q ss_pred             EEEEcCCChhhHHHHH-HcC-CCEE-EEcccccCCCC-HHHHHHHHHHHHHH
Q 033625           63 IEVDGGLGPSTIAEAA-SAG-ANCI-VAGSSVFGAPE-PAHVISLMRKSVED  110 (115)
Q Consensus        63 i~~dGGI~~~ni~~l~-~~G-ad~i-v~Gsaif~~~d-~~~~~~~l~~~~~~  110 (115)
                      =+..||+++..++.+. ..| .|++ ..|.+|+..++ +.+-++.+|+.++.
T Consensus       228 Pv~sgG~~~~~vp~~~~~~G~~Dvil~~GGGi~gHP~G~~AGa~A~rqA~eA  279 (320)
T d5ruba1         228 PIISGGMNALRMPGFFENLGNANVILTAGGGAFGHIDGPVAGARSLRQAWQA  279 (320)
T ss_dssp             EEEEECCCTTTHHHHHHHHSCCCCEEEECTTTTCCTTCHHHHHHHHHHHHHH
T ss_pred             eecCCCCcHhHhHHHHHHhCCCcEEEEcCcccccCCCchHHhHHHHHHHHHH
Confidence            5789999999999874 489 6885 57899999876 88888889988774

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.58  E-value=1.8  Score=25.86  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=55.0

Q ss_pred             CHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCChhhHHHHHHcCCCEEEEccc
Q 033625           12 SVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSS   90 (115)
Q Consensus        12 ~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsa   90 (115)
                      ..+.++.+. . ...|.|++-..-|+.+|       ++.++.++.. ++.|+ .+.|--+.++.....++|||-++    
T Consensus        34 ~~~a~~~~~-~-~~~dliilD~~mp~~~g-------~~~~~~~~~~-~~~piI~lt~~~~~~~~~~a~~~Ga~dyl----   99 (120)
T d1zgza1          34 GAGLREIMQ-N-QSVDLILLDINLPDENG-------LMLTRALRER-STVGIILVTGRSDRIDRIVGLEMGADDYV----   99 (120)
T ss_dssp             HHHHHHHHH-H-SCCSEEEEESCCSSSCH-------HHHHHHHHTT-CCCEEEEEESSCCHHHHHHHHHHTCSEEE----
T ss_pred             HHHHHHHHH-h-cCCCEEeeehhhccchh-------HHHHHHHhcc-CCCeEEEEEccCCHHHHHHHHHCCCCEEE----
Confidence            334444433 2 57999998777787554       3445666554 45664 45676777778888999999884    


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q 033625           91 VFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        91 if~~~d~~~~~~~l~~~~~~  110 (115)
                       .+.=++.+-..++++.+++
T Consensus       100 -~KP~~~~~L~~~i~~~lrR  118 (120)
T d1zgza1         100 -TKPLELRELVVRVKNLLWR  118 (120)
T ss_dssp             -ESSCCHHHHHHHHHHHHHH
T ss_pred             -ECCCCHHHHHHHHHHHHcc
Confidence             4544777777777766653

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=86.91  E-value=0.26  Score=36.58  Aligned_cols=44  Identities=14%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             CCCcEEEEcCCC--hhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           59 PSLDIEVDGGLG--PSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        59 ~~~~i~~dGGI~--~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      .+.|+.+.||++  ++-...+.+-++|.+.+|++++..+|+.+.++
T Consensus       316 ~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~  361 (399)
T d1oyaa_         316 WKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLE  361 (399)
T ss_dssp             CCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHH
T ss_pred             hCCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHHH
Confidence            368999999995  34556677778999999999998898765544

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=86.90  E-value=0.56  Score=32.12  Aligned_cols=45  Identities=22%  Similarity=0.366  Sum_probs=36.5

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEcc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +..++.|+++++.++++.+.+=.=.|.+.++...++||+++|.=.
T Consensus        51 p~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~   95 (213)
T d1wbha1          51 ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG   95 (213)
T ss_dssp             TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS
T ss_pred             hhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC
Confidence            457888999999888876665555689999999999999987653

>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Putative phosphatase DR1281
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.77  E-value=0.29  Score=34.69  Aligned_cols=34  Identities=21%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             CCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           68 GLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        68 GI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      |||++...+|.++|+|++-+|--+|..+++.+.+
T Consensus        44 Git~~~~~~l~~~GvDviT~GNH~wdkkei~~~i   77 (255)
T d1t70a_          44 GMHRDAARGALEAGAGCLTLGNHAWHHKDIYPML   77 (255)
T ss_dssp             SCCHHHHHHHHHHTCSEEECCTTTTSSTTHHHHH
T ss_pred             CCCHHHHHHHHHcCCcEEEcCchhhcchhHHHHH
Confidence            7999999999999999999999999888765544

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=86.73  E-value=1.5  Score=27.45  Aligned_cols=76  Identities=11%  Similarity=0.133  Sum_probs=53.9

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC--CCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY--PSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~--~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.|++-..-||.+|       ++-++++|+..  +++|| .+.+--+.++.....++||+.++.     +.-++.+-.
T Consensus        62 ~pdlillD~~mP~~~G-------~el~~~ir~~~~~~~ipiI~lT~~~~~~~~~~~~~~Ga~~~l~-----KP~~~~~L~  129 (149)
T d1k66a_          62 RPAVILLDLNLPGTDG-------REVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIV-----KPLEIDRLT  129 (149)
T ss_dssp             CCSEEEECSCCSSSCH-------HHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHH
T ss_pred             CCCeEEccccccCCCc-------HHHHHHHHhccccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHH
Confidence            5788887666687554       44566776542  36774 457888899999999999998743     444777777


Q ss_pred             HHHHHHHHHHh
Q 033625          102 SLMRKSVEDAQ  112 (115)
Q Consensus       102 ~~l~~~~~~~~  112 (115)
                      ..+++.++.|.
T Consensus       130 ~~i~~~l~~~~  140 (149)
T d1k66a_         130 ETVQTFIKYWL  140 (149)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777777654

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=86.41  E-value=1.8  Score=30.98  Aligned_cols=80  Identities=19%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEE--EeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEc--------------------
Q 033625           10 GTSVEEVYPLVEGANPVEMVLV--MTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDG--------------------   67 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlv--m~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dG--------------------   67 (115)
                      -|..+..+.+++. -++|++=+  .++|--|.+.....-.+++++++++.. ++|++.-|                    
T Consensus       152 ~T~peea~~Fv~~-TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~~g~~lh  229 (305)
T d1rvga_         152 LTNPEEARIFMER-TGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRASGGEIG  229 (305)
T ss_dssp             CCCHHHHHHHHHH-HCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTTCCCC
T ss_pred             cCCHHHHHHHHHH-hCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhcc-CCCeeccCCccccHHHHhhhcccCcccC
Confidence            4777888888743 47997642  222322333222224567777777764 68999888                    


Q ss_pred             ---CCChhhHHHHHHcCCCEEEEcccc
Q 033625           68 ---GLGPSTIAEAASAGANCIVAGSSV   91 (115)
Q Consensus        68 ---GI~~~ni~~l~~~Gad~iv~Gsai   91 (115)
                         |+..+.++...+.|+.-|=+++.+
T Consensus       230 g~sG~~~e~i~~ai~~GV~KiNi~T~l  256 (305)
T d1rvga_         230 EAAGIHPEDIKKAISLGIAKINTDTDL  256 (305)
T ss_dssp             SCBCCCHHHHHHHHHTTEEEEEECHHH
T ss_pred             CCCCCCHHHHHHHHHcCeEEEEeChHH
Confidence               788999999999999999888766

>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Escherichia coli [TaxId: 562]

Probab=86.28  E-value=1.1  Score=32.50  Aligned_cols=71  Identities=25%  Similarity=0.362  Sum_probs=48.7

Q ss_pred             cCCCCHHhHHHhHhC-CCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE---------------EcCCCh
Q 033625            8 KPGTSVEEVYPLVEG-ANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV---------------DGGLGP   71 (115)
Q Consensus         8 ~p~t~~~~~~~~~~~-~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~---------------dGGI~~   71 (115)
                      +|...-|.+.+...| ..++|+++   |.||..       -++-|+++++.. ++|+.+               .|.+++
T Consensus       221 d~~n~~ea~~e~~~d~~EGAD~lm---VKPa~~-------yLDii~~~k~~~-~~Pv~aYqVSGEYami~~aa~~g~~d~  289 (323)
T d1l6sa_         221 NPMNRREAIRESLLDEAQGADCLM---VKPAGA-------YLDIVRELRERT-ELPIGAYQVSGEYAMIKFAALAGAIDE  289 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSBEE---EESCTT-------CHHHHHHHHTTC-SSCEEEEECHHHHHHHHHHHHTTSSCH
T ss_pred             CcccchHHHHHHHHHHhhccceEE---eccchh-------hHHHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHcCCCch
Confidence            455555555554433 25899997   789843       456678887764 788776               577776


Q ss_pred             h-----hHHHHHHcCCCEEEEcc
Q 033625           72 S-----TIAEAASAGANCIVAGS   89 (115)
Q Consensus        72 ~-----ni~~l~~~Gad~iv~Gs   89 (115)
                      +     .+..++.+|||+++.=.
T Consensus       290 ~~~~~E~l~~~kRAGAd~IitY~  312 (323)
T d1l6sa_         290 EKVVLESLGSIKRAGADLIFSYF  312 (323)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEETT
T ss_pred             HhHHHHHHHHHHhcCCCEEEEcC
Confidence            4     45668999999997653

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.96  E-value=1.7  Score=29.92  Aligned_cols=58  Identities=21%  Similarity=0.265  Sum_probs=39.7

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCCCh-hhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGP-STIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI~~-~ni~~l~~~Gad~i   85 (115)
                      .++|||-   .-.||....-.+....++.+...- .++.|-+.|||+. +....++++|++.+
T Consensus       160 aGadFVK---TSTG~~~~gat~~~~~~l~~~~~~-~~vgIKasGGIrt~~~a~~~i~aGa~rI  218 (234)
T d1n7ka_         160 AGADIVK---TSTGVYTKGGDPVTVFRLASLAKP-LGMGVKASGGIRSGIDAVLAVGAGADII  218 (234)
T ss_dssp             TTCSEEE---SCCSSSCCCCSHHHHHHHHHHHGG-GTCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             hhhhhee---ecccccCCCCCHHHHHHHHHHhcC-CCCcEEeeCCcCCHHHHHHHHHccCcee
Confidence            6899985   556764333234444444443322 3588999999986 88889999999975

>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.91  E-value=0.67  Score=33.91  Aligned_cols=37  Identities=16%  Similarity=0.202  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCCChhhHHHHHHcC--CCEEEEcccccCC
Q 033625           58 YPSLDIEVDGGLGPSTIAEAASAG--ANCIVAGSSVFGA   94 (115)
Q Consensus        58 ~~~~~i~~dGGI~~~ni~~l~~~G--ad~iv~Gsaif~~   94 (115)
                      ++++.|.+-||++++.+.++.+.|  +|.|=+|+.+...
T Consensus       144 ~~~v~Ii~Sdglde~~I~~l~~~~~~id~FGvGt~L~~~  182 (345)
T d2f7fa1         144 FTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLITA  182 (345)
T ss_dssp             CTTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHTT
T ss_pred             CCceEEEEeCCCCHHHHHHHHHcCCceeEeecCcceeec
Confidence            467889999999999999998876  4899999998753

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=85.82  E-value=0.54  Score=32.33  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=37.3

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +..++.|+.+++.+|++.+-+=.=.|.+.++...++||+++|.=
T Consensus        53 p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP   96 (216)
T d1mxsa_          53 QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP   96 (216)
T ss_dssp             THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred             hhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECC
Confidence            56778899999988888777777778999999999999988754

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=85.46  E-value=2.4  Score=25.34  Aligned_cols=86  Identities=12%  Similarity=0.162  Sum_probs=55.6

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEE-EcCCChhhHHHHHHcCCCEEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV-DGGLGPSTIAEAASAGANCIV   86 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv   86 (115)
                      .+..+.++.+- . ...|.|++-..-|+.+|       ++-++++|+.  .+++|+.+ .|--+.++..+..++||+-++
T Consensus        31 ~~~~~al~~l~-~-~~~dlil~D~~mp~~~G-------~~l~~~lr~~~~~~~~pvi~lt~~~~~~~~~~~~~~G~~d~l  101 (121)
T d1zesa1          31 EDYDSAVNQLN-E-PWPDLILLDWMLPGGSG-------IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYI  101 (121)
T ss_dssp             CSHHHHHHHSS-S-SCCSEEEECSSCTTSCH-------HHHHHHHHHSTTTTTSCEEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred             CChHHHHHHHH-c-cCCCEEEeecCCCCCCH-------HHHHHHHHhCccCCCCeEEEEECCCCHHHHHHHHHCCCCEEE
Confidence            34445555433 3 57898887666687654       4445666653  35677654 666677888899999999874


Q ss_pred             EcccccCCCCHHHHHHHHHHHHH
Q 033625           87 AGSSVFGAPEPAHVISLMRKSVE  109 (115)
Q Consensus        87 ~Gsaif~~~d~~~~~~~l~~~~~  109 (115)
                           .+.=++.+-...++..++
T Consensus       102 -----~KP~~~~~L~~~v~~~lr  119 (121)
T d1zesa1         102 -----TKPFSPKELVARIKAVMR  119 (121)
T ss_dssp             -----ESSCCHHHHHHHHHHHHH
T ss_pred             -----ECCCCHHHHHHHHHHHHc
Confidence                 344466666666666554

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=85.32  E-value=1.2  Score=32.43  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             EecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            6 ALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         6 al~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      ........+.++.+.+  ..+|++.+-..| |+.     ....+.++.+++.. +..+|.+=-=.|.+-...|.++|||+
T Consensus       105 ~~~~~~~~~~~~~L~~--ag~d~i~IDvAh-G~~-----~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~  176 (362)
T d1pvna1         105 GINTRDFRERVPALVE--AGADVLCIDSSD-GFS-----EWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADF  176 (362)
T ss_dssp             EECSSSHHHHHHHHHH--HTCSEEEECCSC-CCB-----HHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSE
T ss_pred             ccchhhhHHHHHHHhh--cCceEEeechhc-cch-----hHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcE
Confidence            3344444455555552  368988764333 333     23445566665543 45777666667899999999999999


Q ss_pred             EEEc
Q 033625           85 IVAG   88 (115)
Q Consensus        85 iv~G   88 (115)
                      +-+|
T Consensus       177 vkVG  180 (362)
T d1pvna1         177 IKIG  180 (362)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9999

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=85.13  E-value=4.1  Score=28.32  Aligned_cols=78  Identities=13%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             CCCCHHhHHHhHhCCCCCCEEEEEeeeCCCC----CcccchhHHHHHHHHHhhCCCCcEE---EEcCCChhhHHHHHHcC
Q 033625            9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFG----GQKFMPEMMDKVRSLRNRYPSLDIE---VDGGLGPSTIAEAASAG   81 (115)
Q Consensus         9 p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~----gq~~~~~~~~ki~~l~~~~~~~~i~---~dGGI~~~ni~~l~~~G   81 (115)
                      .....+......+. ...|.+.+-.-.|...    +........+.++++++... .|+.   +-.+.+.+.+..+.++|
T Consensus       105 ~~~~~~~~~~~~~~-~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~vivk~v~~~~~~~~a~~~~~~G  182 (329)
T d1p0ka_         105 SEATAAQAKEAVEM-IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVS-VPVIVKEVGFGMSKASAGKLYEAG  182 (329)
T ss_dssp             TTCCHHHHHHHHHH-TTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCS-SCEEEEEESSCCCHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHH-cCCCEEEecccccchhhhccccccccchHHHHHHHHHHcC-CCcEEEecCCcchHHHHHHHHhcC
Confidence            34445555554433 4677766533333321    11223556778888888753 4444   34457899999999999


Q ss_pred             CCEEEEc
Q 033625           82 ANCIVAG   88 (115)
Q Consensus        82 ad~iv~G   88 (115)
                      ||.++++
T Consensus       183 aD~i~v~  189 (329)
T d1p0ka_         183 AAAVDIG  189 (329)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9999986

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=84.80  E-value=0.9  Score=30.98  Aligned_cols=44  Identities=27%  Similarity=0.349  Sum_probs=36.4

Q ss_pred             hhHHHHHHHHHhhCCCCcEEEEcCCChhhHHHHHHcCCCEEEEc
Q 033625           45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG   88 (115)
Q Consensus        45 ~~~~~ki~~l~~~~~~~~i~~dGGI~~~ni~~l~~~Gad~iv~G   88 (115)
                      +..++-|+++++.++++.+-+=.=+|.+.++...++||+++|.=
T Consensus        50 ~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP   93 (212)
T d1vhca_          50 EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP   93 (212)
T ss_dssp             TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred             hhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECC
Confidence            45677888898888887777766678999999999999998754

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.62  E-value=1.8  Score=27.87  Aligned_cols=73  Identities=15%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVIS  102 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~  102 (115)
                      ...|.|++-.--||.+|       ++-++++|+. ++.|| ...+--..+......++||+.+++=     .-++.+-..
T Consensus        47 ~~pDlvllDi~mP~~dG-------~e~~~~ir~~-~~~pIi~lTa~~~~~~~~~al~~Ga~~yl~K-----P~~~~~L~~  113 (190)
T d1s8na_          47 HKPDLVIMDVKMPRRDG-------IDAASEIASK-RIAPIVVLTAFSQRDLVERARDAGAMAYLVK-----PFSISDLIP  113 (190)
T ss_dssp             HCCSEEEEESSCSSSCH-------HHHHHHHHHT-TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEE-----SCCHHHHHH
T ss_pred             CCCCEEEEeccccCcch-------HHHHHHHHhc-CCCCEEEEeCCCCHHHHHHHHHcCCCEeccC-----CCCHHHHHH
Confidence            47899998877798765       4445666665 35665 5667777888888899999988654     345665555


Q ss_pred             HHHHHHH
Q 033625          103 LMRKSVE  109 (115)
Q Consensus       103 ~l~~~~~  109 (115)
                      .++..++
T Consensus       114 ~i~~~~~  120 (190)
T d1s8na_         114 AIELAVS  120 (190)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5655443

>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain
species: Clostridium sticklandii [TaxId: 1511]

Probab=83.88  E-value=3.8  Score=26.32  Aligned_cols=94  Identities=13%  Similarity=0.063  Sum_probs=54.8

Q ss_pred             ecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCC--CCcEEEEcCCChhhHHHHHHcCCCE
Q 033625            7 LKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP--SLDIEVDGGLGPSTIAEAASAGANC   84 (115)
Q Consensus         7 l~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~--~~~i~~dGGI~~~ni~~l~~~Gad~   84 (115)
                      |..++|.+.+-+.+.+ ..+|.|.+-+.-+. ++.. .+..-+-++.+++...  ++++.+=|+.-  +-..+.+.|||.
T Consensus        62 LG~~vp~e~~v~~a~e-~~~d~VglS~l~t~-~~~h-~~~~~~~i~~l~~~g~~d~v~vivGG~~~--~~~~a~~~GaD~  136 (160)
T d1xrsb1          62 LGSQVANEDFIKKAVE-LEADVLLVSQTVTQ-KNVH-IQNMTHLIELLEAEGLRDRFVLLCGGPRI--NNEIAKELGYDA  136 (160)
T ss_dssp             CCSSBCHHHHHHHHHH-TTCSEEEEECCCCT-TSHH-HHHHHHHHHHHHHTTCGGGSEEEEECTTC--CHHHHHTTTCSE
T ss_pred             CCCCCCHHHHHHHHHh-cCCCEEEEeecccc-cchh-HHHHHHHHHHHHHcCCCCceEEEEcCCCC--CHHHHHHcCCCE
Confidence            6677888876666644 68999987554432 2211 1223334566666543  35555555443  345567889986


Q ss_pred             EEEcccccCCCCHHHHHHHHHHHHHH
Q 033625           85 IVAGSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        85 iv~Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      +..-     ..+..+.+..+.+.+.+
T Consensus       137 ~f~~-----g~~a~~~a~~l~~~l~~  157 (160)
T d1xrsb1         137 GFGP-----GRFADDVATFAVKTLND  157 (160)
T ss_dssp             EECT-----TCCHHHHHHHHHHHHHH
T ss_pred             EcCC-----CCCHHHHHHHHHHHHHH
Confidence            6221     34667777777776653

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.44  E-value=3.3  Score=25.32  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=53.5

Q ss_pred             CCCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEEEcCC--ChhhHHHHHHcCCCEEEE
Q 033625           10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL--GPSTIAEAASAGANCIVA   87 (115)
Q Consensus        10 ~t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~dGGI--~~~ni~~l~~~Gad~iv~   87 (115)
                      .+..+.++.+- . ...|.|++--.-||.+|       ++-++++++..+..++.+.-.-  +.+...+..++||+.++.
T Consensus        36 ~~g~~al~~~~-~-~~pDlvllDi~MP~~dG-------~e~~~~ir~~~~~~~i~i~~~~~~~~~~~~~al~~Ga~~yl~  106 (140)
T d1a2oa1          36 PDPLVARDLIK-K-FNPDVLTLDVEMPRMDG-------LDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVT  106 (140)
T ss_dssp             SSHHHHHHHHH-H-HCCSEEEEECCCSSSCH-------HHHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCHHHHHHHHH-h-cCCCEEEEcCCCCCCCH-------HHHHHHHHHhCCCCcEEEEEecCCChHHHHHHHHcCCCEEEE
Confidence            34455555443 2 46899988777788654       5567778877665555554332  234555677899999876


Q ss_pred             cccccCCCCHHHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~~~  110 (115)
                      =-..-.........+.+.+.++.
T Consensus       107 KP~~~~~~~~~~~~~~l~~~~r~  129 (140)
T d1a2oa1         107 KPQLGIREGMLAYSEMIAEKVRT  129 (140)
T ss_dssp             CSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            53211123344444445544443

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=83.39  E-value=3.5  Score=25.46  Aligned_cols=76  Identities=5%  Similarity=0.080  Sum_probs=51.5

Q ss_pred             CCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcE-EEEcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHHH
Q 033625           25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDI-EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVI  101 (115)
Q Consensus        25 ~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i-~~dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~  101 (115)
                      ..|.|++-..-|+.+       .++-++++|+.  ..++|| ...+.-+.++.....++|||.++.     +.-+..+-.
T Consensus        56 ~pdlIllD~~mP~~~-------G~el~~~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~-----KP~~~~~L~  123 (144)
T d1i3ca_          56 RPNLILLDLNLPKKD-------GREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLT-----KSRNLKDLF  123 (144)
T ss_dssp             CCSEEEECSCCSSSC-------HHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHH
T ss_pred             CCCEEEEECcccccc-------chHHHHHHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHH
Confidence            478888776677754       45556666654  245664 467788889999999999998854     433666666


Q ss_pred             HHHHHHHHHHh
Q 033625          102 SLMRKSVEDAQ  112 (115)
Q Consensus       102 ~~l~~~~~~~~  112 (115)
                      +.+++....+.
T Consensus       124 ~~i~~l~~~~~  134 (144)
T d1i3ca_         124 KMVQGIESFWL  134 (144)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            66666555443

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=83.14  E-value=3.1  Score=28.13  Aligned_cols=58  Identities=19%  Similarity=0.283  Sum_probs=40.6

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhC-CCCcEEEEcCCC-hhhHHHHHHcCCCEEEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-PSLDIEVDGGLG-PSTIAEAASAGANCIVA   87 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~-~~~~i~~dGGI~-~~ni~~l~~~Gad~iv~   87 (115)
                      .++|||-   ...||....-   +.+.++.+++.. .++.|-+.|||+ .+....++++|++-+=.
T Consensus       144 aGadfiK---TSTG~~~~ga---t~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~riGt  203 (211)
T d1ub3a_         144 GGADFLK---TSTGFGPRGA---SLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGT  203 (211)
T ss_dssp             HTCSEEE---CCCSSSSCCC---CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             hccceEE---ecCCCCCCCC---CHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhHhcc
Confidence            4889995   5667754433   334455555543 468899999986 68888899999997633

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=82.66  E-value=3.9  Score=25.54  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=50.3

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV-DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      ..+|.|++-..-|+.+|       ++-++++|+.  .+++||.+ .|--+.++.....++|||-++     .+.=++.+-
T Consensus        54 ~~~DlillD~~mP~~dG-------~el~~~ir~~~~~~~iPiI~lt~~~~~~~~~~a~~~Ga~d~l-----~KP~~~~~L  121 (153)
T d1w25a2          54 GPVDLVIVNAAAKNFDG-------LRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDIL-----SRPIDPQEL  121 (153)
T ss_dssp             SSCSEEEEETTCSSSCH-------HHHHHHHHTSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEE-----ESSCCHHHH
T ss_pred             CCCCEEEEECccccccc-------hHHHHHHHhccccccceeEEeecCCCHHHHHHHHhcCcceEE-----ECCCCHHHH
Confidence            57899988777787654       4556666643  35677654 555567777788999999884     444466666


Q ss_pred             HHHHHHHHHH
Q 033625          101 ISLMRKSVED  110 (115)
Q Consensus       101 ~~~l~~~~~~  110 (115)
                      ..+++..++.
T Consensus       122 ~~~i~~~l~~  131 (153)
T d1w25a2         122 SARVKTQIQR  131 (153)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666665543

>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.43  E-value=6.3  Score=27.74  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             CCCCEEEEEeeeCCCCC-cccchhHHHHHHH-HHhh---CCCCcEEEEcCCChhhHHHH-HHcCCCEEEE-cccccCCCC
Q 033625           24 NPVEMVLVMTVEPGFGG-QKFMPEMMDKVRS-LRNR---YPSLDIEVDGGLGPSTIAEA-ASAGANCIVA-GSSVFGAPE   96 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~g-q~~~~~~~~ki~~-l~~~---~~~~~i~~dGGI~~~ni~~l-~~~Gad~iv~-Gsaif~~~d   96 (115)
                      .++|.+.+    |++.| -.+.++....+.. +++-   .+.+-=+..||+++..++.+ ...|-|++.. |.+|+..++
T Consensus       172 aGaD~ih~----~~~~Gk~~~~~~e~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~D~il~~GGgi~gHP~  247 (291)
T d2d69a1         172 IGVDQIHT----GTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPD  247 (291)
T ss_dssp             HTCSEEEC----CCCCSSSCCCHHHHHHHHHHHHSCCTTCCCCEEEEESSCCGGGHHHHHHHHCSCCEEECHHHHHTCTT
T ss_pred             cCCCeeec----CCCCCCCCCCHHHHHHHHHHhccccccCCCceeccccccchhhhHHHHHHcCCceEEEcCccccCCCC
Confidence            48999863    33222 2333444344433 3321   12344568999999999986 6789998766 477998875


Q ss_pred             -HHHHHHHHHHHHHH
Q 033625           97 -PAHVISLMRKSVED  110 (115)
Q Consensus        97 -~~~~~~~l~~~~~~  110 (115)
                       +++-++.+|+.++.
T Consensus       248 G~~aGa~A~RqA~ea  262 (291)
T d2d69a1         248 GPRAGAKALRDAIDA  262 (291)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence             88888888887763

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.84  E-value=3.9  Score=24.90  Aligned_cols=86  Identities=12%  Similarity=0.148  Sum_probs=52.9

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHh--hCCCCcEE-EEcCCChhhHHHHHHcCCCEEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN--RYPSLDIE-VDGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~--~~~~~~i~-~dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      +..+.++.+-   ...|.|++-..-||.+|..+    .++|++...  ..+.+||. +.|-...+....+.++|+|.++ 
T Consensus        39 ~g~eal~~l~---~~~dlillD~~mP~~dG~el----~~~ir~~~~~~~~~~~~ii~lT~~~~~~~~~~~~~~G~~~~l-  110 (134)
T d1dcfa_          39 SNEECLRVVS---HEHKVVFMDVCMPGVENYQI----ALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVL-  110 (134)
T ss_dssp             SHHHHHHHCC---TTCSEEEEECCSSTTTTTHH----HHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEE-
T ss_pred             CHHHHHHHhh---cCCCeEEEEeccCCCchHHH----HHHHHHhcccccCCCCeEEEEeCCCCHHHHHHHHHcCCCEEE-
Confidence            3445665433   56899888777798777543    333433211  12345654 6788888999999999999873 


Q ss_pred             cccccCCCCHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~  108 (115)
                          .+.=++.+-...+++.+
T Consensus       111 ----~KP~~~~~L~~~l~~~l  127 (134)
T d1dcfa_         111 ----LKPVSLDNIRDVLSDLL  127 (134)
T ss_dssp             ----ESSCCHHHHHHHHHHHH
T ss_pred             ----ECCCCHHHHHHHHHHHh
Confidence                34335555444455444

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.61  E-value=3.7  Score=28.02  Aligned_cols=56  Identities=20%  Similarity=0.389  Sum_probs=40.0

Q ss_pred             CCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh-CCCCcEEEEcCCC-hhhHHHHHHcCCCEE
Q 033625           24 NPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR-YPSLDIEVDGGLG-PSTIAEAASAGANCI   85 (115)
Q Consensus        24 ~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~-~~~~~i~~dGGI~-~~ni~~l~~~Gad~i   85 (115)
                      .++|||-   .-.||....-   +++.++.+++. .+.+.|-+.|||+ .+....+.++|++-+
T Consensus       144 aGadfiK---TSTG~~~~ga---t~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~Ri  201 (225)
T d1mzha_         144 AGADFIK---TSTGFAPRGT---TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI  201 (225)
T ss_dssp             HTCSEEE---CCCSCSSSCC---CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             cccceEe---ecCCCCCCCC---CHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhhe
Confidence            5899985   5667754433   33445555554 3468999999996 677888999999975

>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DR1281-like
domain: Hypothetical protein MPN349
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=81.53  E-value=0.36  Score=34.68  Aligned_cols=60  Identities=22%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             CCCCcccchhHHHHHHHHHhhCCCCcEEEE--------cCCChhhHHHHHHcCCCEEEEcccccCCCCHHHH
Q 033625           37 GFGGQKFMPEMMDKVRSLRNRYPSLDIEVD--------GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV  100 (115)
Q Consensus        37 G~~gq~~~~~~~~ki~~l~~~~~~~~i~~d--------GGI~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~  100 (115)
                      |-.|-......   |.++++.+ ++.+++.        -|||++...+|.++|+|++-+|--+|...+....
T Consensus        15 G~~GR~~v~~~---Lp~Lr~~~-~iDfVIaNgENaa~G~Git~k~~~eL~~~GvDvIT~GNH~wd~kei~~~   82 (281)
T d1t71a_          15 GKAGRNIIKNN---LAQLKSKY-QADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYITMGNHTWFQKLDLAV   82 (281)
T ss_dssp             HHHHHHHHHTT---HHHHHHHH-TCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEECCTTTTCCGGGHHH
T ss_pred             CHHHHHHHHHH---hHHHHHHh-CCCEEEECCccCCCCcCCCHHHHHHHHHhCCcEEEcCchhhhchhhHHH
Confidence            44444444444   44454442 3444443        3899999999999999999999889977665443

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=81.17  E-value=4.2  Score=24.85  Aligned_cols=84  Identities=12%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhh--CCCCcEEE-EcCCChhhHHHHHHcCCCEEEE
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNR--YPSLDIEV-DGGLGPSTIAEAASAGANCIVA   87 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~--~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~   87 (115)
                      +..+.++.+. . ...|.|++-..-|+.+|-.       -++.+++.  .+++||.+ .|--+.+......++|||-++.
T Consensus        33 ~~~eal~~~~-~-~~~dlil~D~~~p~~~G~~-------~~~~ir~~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~  103 (139)
T d1w25a1          33 DGPTALAMAA-R-DLPDIILLDVMMPGMDGFT-------VCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLT  103 (139)
T ss_dssp             SHHHHHHHHH-H-HCCSEEEEESCCSSSCHHH-------HHHHHHHSTTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEE
T ss_pred             cchhhhhhhh-c-ccceeeeeeccccCCCchH-------HHHHhhhcccccCCCEEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence            3444554443 1 4689888877778866544       33444442  34677655 5666677777889999998854


Q ss_pred             cccccCCCCHHHHHHHHHHHH
Q 033625           88 GSSVFGAPEPAHVISLMRKSV  108 (115)
Q Consensus        88 Gsaif~~~d~~~~~~~l~~~~  108 (115)
                           +.-++.+-...+++.+
T Consensus       104 -----KP~~~~~L~~~i~~~l  119 (139)
T d1w25a1         104 -----KPIDDVMLFARVRSLT  119 (139)
T ss_dssp             -----SSCCHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHH
Confidence                 4446655555554443

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=1.3  Score=30.93  Aligned_cols=39  Identities=21%  Similarity=0.226  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCChhhHHHHH-HcCCCEEEEcccccCCCCHH
Q 033625           60 SLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAPEPA   98 (115)
Q Consensus        60 ~~~i~~dGGI~~~ni~~l~-~~Gad~iv~Gsaif~~~d~~   98 (115)
                      +++|.==|+++++|+.++. .-++|++-+|++-...++..
T Consensus       204 ~v~iLYGGSV~~~N~~~i~~~~~vdG~LVGgASl~~~~F~  243 (255)
T d1trea_         204 QVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFA  243 (255)
T ss_dssp             HCEEEECSCCCTTTHHHHHTSTTCCEEEESGGGGCHHHHH
T ss_pred             CccEEecCCcCHhHHHHHhcCCCCCEEEechhhcCHHHHH
Confidence            5789999999999999875 57999999999877655443

>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Nitrogenase accessory factor-like
family: MTH1175-like
domain: Hypothetical protein MTH1175
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.12  E-value=2.8  Score=25.26  Aligned_cols=94  Identities=12%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             CceEEEecCCCCHHhHHHhHhCCCCCCEEEEEeeeCCC------------CCcccchhHHHHHHHHHhhCCCCcEEEEcC
Q 033625            1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGF------------GGQKFMPEMMDKVRSLRNRYPSLDIEVDGG   68 (115)
Q Consensus         1 ~k~Glal~p~t~~~~~~~~~~~~~~vD~vlvm~v~pG~------------~gq~~~~~~~~ki~~l~~~~~~~~i~~dGG   68 (115)
                      ||+.++.+..+..+.+.+-+   ....+.+|.-+..+.            ....-.  .....+.+.+.  ++.+.+.++
T Consensus         1 MkIAv~s~~~~~~s~V~~HF---G~A~~f~I~dv~~~~~~~ve~~~n~~~~~~~~~--~~~~~~~l~~~--~vd~vi~~~   73 (124)
T d1eo1a_           1 MKIAIASSGTDLGSEVSRFF---GRAPYFMIVEMKKGNIESSEVIENPSASASGGA--GIRTAQIIANN--GVKAVIASS   73 (124)
T ss_dssp             CEEEESSCCSSSSCSSCSCC---SSCSCEEEEEESSSSEEEEEEECCSCTTTSSSC--STTHHHHHHHT--TCCEEEECC
T ss_pred             CEEEEEecCCCCcccccccc---ccCCEEEEEEecCCcEEEEEEEcCCCcccCccc--hHHHHHHHHHC--CCCEEEECC
Confidence            55555554443334455555   667777777665442            111100  11223444443  699999999


Q ss_pred             CChhhHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHH
Q 033625           69 LGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK  106 (115)
Q Consensus        69 I~~~ni~~l~~~Gad~iv~Gsaif~~~d~~~~~~~l~~  106 (115)
                      |-+.-+..|.+.|..++..     ...++.++++.+.+
T Consensus        74 iG~~~~~~L~~~GI~v~~~-----~~~~v~eal~~~~~  106 (124)
T d1eo1a_          74 PGPNAFEVLNELGIKIYRA-----TGTSVEENLKLFTE  106 (124)
T ss_dssp             SSHHHHHHHHHHTCEEEEC-----CSCCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCEEEEc-----CCCCHHHHHHHHHh
Confidence            9999999999999998742     22467777776553

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=80.32  E-value=4.2  Score=24.37  Aligned_cols=86  Identities=12%  Similarity=0.043  Sum_probs=54.0

Q ss_pred             CCHHhHHHhHhCCCCCCEEEEEeeeCCCCCcccchhHHHHHHHHHhhCCCCcEEE-EcCCChhhHHHHHHcCCCEEEEcc
Q 033625           11 TSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEV-DGGLGPSTIAEAASAGANCIVAGS   89 (115)
Q Consensus        11 t~~~~~~~~~~~~~~vD~vlvm~v~pG~~gq~~~~~~~~ki~~l~~~~~~~~i~~-dGGI~~~ni~~l~~~Gad~iv~Gs   89 (115)
                      +.-+.++.+. . ...|.|++----|+.+|.       +.++++++..+..|+.+ .|--+.+......+.||+-+    
T Consensus        34 ~~~~al~~~~-~-~~~dliilD~~mp~~~G~-------~~~~~i~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~dy----  100 (128)
T d1yioa2          34 CASTFLEHRR-P-EQHGCLVLDMRMPGMSGI-------ELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEF----  100 (128)
T ss_dssp             SHHHHHHHCC-T-TSCEEEEEESCCSSSCHH-------HHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEE----
T ss_pred             cHHHHHHHHH-h-cCCCEeehhhhcccchhH-------HHHHHHHhhCCCCeEEEEEEECCHHHHHHHHHCCCCEE----
Confidence            3444444433 2 468888776666876654       44666777767677654 45445666777889998877    


Q ss_pred             cccCCCCHHHHHHHHHHHHHH
Q 033625           90 SVFGAPEPAHVISLMRKSVED  110 (115)
Q Consensus        90 aif~~~d~~~~~~~l~~~~~~  110 (115)
                       |.+.=++.+-...+++.++.
T Consensus       101 -l~KP~~~~~L~~~i~~~l~~  120 (128)
T d1yioa2         101 -LPKPFEEQALLDAIEQGLQL  120 (128)
T ss_dssp             -EESSCCHHHHHHHHHHHHHH
T ss_pred             -EECCCCHHHHHHHHHHHHHH
Confidence             44444666666666666653