Citrus Sinensis ID: 033634

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAVETVQA
Secondary Structure (PSIPRED)
ccccccEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEEcccccEEEEEccccEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlegkavigeTDMLETMQQDALDLAAKAldffdvtepTEIARFIKKEFDkaygtgwqcivgtdfgsfvthcygnfiyFRVGSLAILLFrgsaapgsdddeANQFAKLAVETVQA
Flexible Loop (DISEMBL)
MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAVETVQA
Low Complexity Region (SEG)
MLEGKAVIGETDMLETMQQdaldlaakaldffdVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAVETVQA
Disordered region (IsUnstruct)
******************QDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRG************************
Disordered Region (DISOPRED)
***GKAV*GETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLF*******************AV*****
Disordered Region (DISEMBL)
MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAVETVQA
Disordered Region (DISPRO)
****KAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAVETVQA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAVETVQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
O02414	89	Dynein light chain LC6, f	N/A	no	0.771	0.988	0.544	1e-21
O96860	89	Dynein light chain 2, cyt	yes	no	0.771	0.988	0.544	3e-21
Q24117	89	Dynein light chain 1, cyt	yes	no	0.771	0.988	0.533	5e-21
Q22799	89	Dynein light chain 1, cyt	yes	no	0.771	0.988	0.522	5e-21
Q78P75	89	Dynein light chain 2, cyt	yes	no	0.771	0.988	0.522	8e-21
Q9D0M5	89	Dynein light chain 2, cyt	yes	no	0.771	0.988	0.522	8e-21
Q96FJ2	89	Dynein light chain 2, cyt	yes	no	0.771	0.988	0.522	8e-21
Q3MHR3	89	Dynein light chain 2, cyt	yes	no	0.771	0.988	0.522	8e-21
P63170	89	Dynein light chain 1, cyt	no	no	0.771	0.988	0.511	4e-20
P63169	89	Dynein light chain 1, cyt	yes	no	0.771	0.988	0.511	4e-20

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M E KAVI   DM E MQQDA+D A +AL+ F++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +A+LLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAVLLFKS 88

Anthocidaris crassispina (taxid: 7629)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQDA+D A +AL+ +++ +  +IA FIKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQDA+D A +AL+ +++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M++ KAVI   DM + MQQDA+D A +AL+ +++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQDA+D A +A++ +++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQDA+D A +A++ +++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQDA+D A +A++ +++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQDA+D A +A++ +++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQD+++ A +AL+ +++ +  +IA  IKKEFDK Y   W CIV
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 2/90 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQD+++ A +AL+ +++ +  +IA  IKKEFDK Y   W CIV
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
225461306	109	PREDICTED: dynein light chain LC6, flage	0.956	1.0	0.789	1e-43
224122890	116	predicted protein [Populus trichocarpa]	0.973	0.956	0.754	1e-41
224097520	116	predicted protein [Populus trichocarpa]	0.964	0.948	0.761	2e-41
255569597	112	cytoplasmic dynein light chain, putative	0.973	0.991	0.765	5e-41
224117286	116	predicted protein [Populus trichocarpa]	0.921	0.905	0.757	5e-40
351726804	109	uncharacterized protein LOC100527224 [Gl	0.912	0.954	0.757	7e-40
356543152	109	PREDICTED: LOW QUALITY PROTEIN: dynein l	0.912	0.954	0.766	8e-40
388505062	110	unknown [Lotus japonicus]	0.947	0.981	0.75	1e-39
449458215	116	PREDICTED: dynein light chain LC6, flage	0.789	0.775	0.844	2e-37
297803366	110	predicted protein [Arabidopsis lyrata su	0.850	0.881	0.75	9e-37

>gi|225461306|ref|XP_002281713.1| PREDICTED: dynein light chain LC6, flagellar outer arm [Vitis vinifera] gi|302143086|emb|CBI20381.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/114 (78%), Positives = 99/114 (86%), Gaps = 5/114 (4%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAVIGETDML+TMQQDALDLAAKALDFFDVTE TEIARFIKKEFD+ +G GWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLAAKALDFFDVTEATEIARFIKKEFDRTHGPGWQCIV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKLAVETVQA 114
           GTDFGSFVTHCYG FIYFR+ SLAILLF+GSA P   + +ANQ   L  E+V+A
Sbjct: 61  GTDFGSFVTHCYGCFIYFRIASLAILLFKGSAGP---EAQANQIPVL--ESVKA 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122890|ref|XP_002330389.1| predicted protein [Populus trichocarpa] gi|222871774|gb|EEF08905.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 99/114 (86%), Gaps = 3/114 (2%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAVIGETDML TMQQDALDLAAKALDFFDVT+ T+IAR IKKEFD+ YG GWQCIV
Sbjct: 1   MLEGKAVIGETDMLPTMQQDALDLAAKALDFFDVTDSTDIARLIKKEFDRMYGPGWQCIV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKL-AVETVQ 113
           G+DFGSFVTHC+G FIYF++GSL+ILLFRGSA  G  + E NQF  L ++ET++
Sbjct: 61  GSDFGSFVTHCFGCFIYFQIGSLSILLFRGSA--GYPEPEENQFEALESLETLE 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097520|ref|XP_002334606.1| predicted protein [Populus trichocarpa] gi|222873721|gb|EEF10852.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 98/113 (86%), Gaps = 3/113 (2%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAVIGETDML TMQQDALDLAAKALDFFDVT+ T+IAR IKKEFD+ YG GWQCIV
Sbjct: 1   MLEGKAVIGETDMLPTMQQDALDLAAKALDFFDVTDSTDIARLIKKEFDRMYGPGWQCIV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKL-AVETV 112
           G+DFGSFVTHC+G FIYF++GSL+ILLFRGSA  G  + E NQF  L ++ET+
Sbjct: 61  GSDFGSFVTHCFGCFIYFQIGSLSILLFRGSA--GYPEPEENQFEALESLETL 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569597|ref|XP_002525764.1| cytoplasmic dynein light chain, putative [Ricinus communis] gi|223534914|gb|EEF36600.1| cytoplasmic dynein light chain, putative [Ricinus communis]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAV+GETDML+TMQQDALD+AAKALDFFDVTE TEIARFIKKEFD  YG GWQCIV
Sbjct: 1   MLEGKAVVGETDMLQTMQQDALDVAAKALDFFDVTEATEIARFIKKEFDGTYGAGWQCIV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKL-AVETVQA 114
           G DFGSFVTHC G FI+F+VGSLAILLFRGSA P   + +  QF  L A++TV A
Sbjct: 61  GRDFGSFVTHCCGCFIHFQVGSLAILLFRGSAGP---EPKPAQFTALEALKTVIA 112

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117286|ref|XP_002317530.1| predicted protein [Populus trichocarpa] gi|222860595|gb|EEE98142.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 92/107 (85%), Gaps = 2/107 (1%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAVIGETDML+TMQQDALDLAAKALDFFD T+ T+IARFIK+EFD+ YG GW C+V
Sbjct: 1   MLEGKAVIGETDMLQTMQQDALDLAAKALDFFDATDATDIARFIKQEFDRMYGPGWHCVV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKL 107
           G DFGSFVTHC+G FIYF+VGSL+ILLFRGSA+    + E NQF  L
Sbjct: 61  GRDFGSFVTHCFGCFIYFQVGSLSILLFRGSAS--YPEPEKNQFEPL 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726804|ref|NP_001236627.1| uncharacterized protein LOC100527224 [Glycine max] gi|255631820|gb|ACU16277.1| unknown [Glycine max]

 Score =  167 bits (423), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 93/107 (86%), Gaps = 3/107 (2%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAVIGETDML+TM QDA+DLA+KALDFFDVTE  +IARFIKKEFD+ +G GWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMHQDAMDLASKALDFFDVTEAIKIARFIKKEFDRMHGPGWQCIV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKL 107
           GTDFGSFVTHC G FIYF +G+LAILLFRGSAAP + +   N+F+ L
Sbjct: 61  GTDFGSFVTHCCGCFIYFCLGNLAILLFRGSAAPEAHE---NRFSAL 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543152|ref|XP_003540027.1| PREDICTED: LOW QUALITY PROTEIN: dynein light chain LC6, flagellar outer arm-like [Glycine max]

 Score =  167 bits (423), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 92/107 (85%), Gaps = 3/107 (2%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAVIGETDML+TMQQDA DLA+KALDFFDVTE  EIARFIKKEFD+ +G GWQC V
Sbjct: 1   MLEGKAVIGETDMLQTMQQDATDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCXV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEANQFAKL 107
           GTDFGSFVTHC G FIYF +G+LAILLFRGSAAP + +   N+F+ L
Sbjct: 61  GTDFGSFVTHCCGCFIYFCLGNLAILLFRGSAAPEAHE---NRFSTL 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505062|gb|AFK40597.1| unknown [Lotus japonicus]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 8/116 (6%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAVIGETDML+TMQQ+ALDLA+KALDFFDVTE  EIARFIKKEFD+ +G GWQCIV
Sbjct: 1   MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKKEFDRMHGPGWQCIV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEA--NQFAKLAVETVQA 114
           GTDFGSFVTHC G FIYF +GSLAILLFRGSA     D EA  N F+  A+E  +A
Sbjct: 61  GTDFGSFVTHCCGCFIYFCIGSLAILLFRGSA-----DQEAKENHFSA-ALEAARA 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458215|ref|XP_004146843.1| PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis sativus] gi|449476707|ref|XP_004154812.1| PREDICTED: dynein light chain LC6, flagellar outer arm-like [Cucumis sativus]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 83/90 (92%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          MLEGKA++GETDMLE MQQDAL+LAAKALD FDVTE T+IARFIKKEFD+ +G GWQCIV
Sbjct: 1  MLEGKAIVGETDMLEAMQQDALNLAAKALDSFDVTEATDIARFIKKEFDRIHGGGWQCIV 60

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          GTDFGSFVTHC+G FIYF VGSLAILLFRG
Sbjct: 61 GTDFGSFVTHCFGCFIYFCVGSLAILLFRG 90

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803366|ref|XP_002869567.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315403|gb|EFH45826.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 86/100 (86%), Gaps = 3/100 (3%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           MLEGKAV+GETDM +TM++DAL LA+KALD FDVTEPT+IARFIKKEFD +YG+GWQCIV
Sbjct: 1   MLEGKAVMGETDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDSSYGSGWQCIV 60

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSA---APGSD 97
           GT FGSFVTHC G FI+F VG+L ILLFRGS    AP +D
Sbjct: 61  GTHFGSFVTHCSGCFIHFSVGNLTILLFRGSVGEPAPRTD 100

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2131764	103	AT4G27360 "AT4G27360" [Arabido	0.894	0.990	0.598	5.6e-29
TAIR|locus:2093457	93	AT3G16120 "AT3G16120" [Arabido	0.798	0.978	0.494	1.9e-19
FB|FBgn0026141	89	Cdlc2 "Cytoplasmic dynein ligh	0.763	0.977	0.483	9.8e-16
ZFIN|ZDB-GENE-030828-11	126	dynll2a "dynein, light chain,	0.763	0.690	0.471	1.6e-15
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.763	0.977	0.471	2e-15
UNIPROTKB|F1NRI4	91	DYNLL2 "Uncharacterized protei	0.763	0.956	0.471	2e-15
UNIPROTKB|Q3MHR3	89	DYNLL2 "Dynein light chain 2,	0.763	0.977	0.471	2e-15
UNIPROTKB|E2RFR5	91	DYNLL2 "Uncharacterized protei	0.763	0.956	0.471	2e-15
UNIPROTKB|Q96FJ2	89	DYNLL2 "Dynein light chain 2,	0.763	0.977	0.471	2e-15
UNIPROTKB|F2Z536	89	DYNLL2 "Uncharacterized protei	0.763	0.977	0.471	2e-15

TAIR|locus:2131764 AT4G27360 "AT4G27360" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 61/102 (59%), Positives = 74/102 (72%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             MLEGKAV+G+TDM +TM++              VTEPT+IARFIKKEFD++YG+GWQCIV
Sbjct:     1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRGSAAPGSDDDEAN 102
             GT FGSFVTHC G FI+F VGSL ILLF+GS    +  D  +
Sbjct:    61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVGEPAPPDRCS 102

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

TAIR|locus:2093457 AT3G16120 "AT3G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 45/91 (49%), Positives = 56/91 (61%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             MLEGKA + ETDM   MQ               V +   IA  IKKEFD+ YG+GWQC+V
Sbjct:     1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRGS 91
             GT+FG F TH  G FIYF +G+L  L+F+G+
Sbjct:    61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGA 91

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

FB|FBgn0026141 Cdlc2 "Cytoplasmic dynein light chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 43/89 (48%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA FIKKEFDK Y   W CIV
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIV 58

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

GO:0005856 "cytoskeleton" evidence=NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0007017 "microtubule-based process" evidence=IEA

ZFIN|ZDB-GENE-030828-11 dynll2a "dynein, light chain, LC8-type 2a" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct:    38 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 95

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    96 GRNFGSYVTHETKHFIYFYLGQVAILLFK 124

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

UNIPROTKB|F1NRI4 DYNLL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct:     3 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q3MHR3 DYNLL2 "Dynein light chain 2, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RFR5 DYNLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct:     3 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    61 GRNFGSYVTHETKHFIYFYLGQVAILLFK 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|Q96FJ2 DYNLL2 "Dynein light chain 2, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|F2Z536 DYNLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 42/89 (47%), Positives = 53/89 (59%)

Query:     1 MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
             M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58

Query:    61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
             G +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.5222	0.7719	0.9887	yes	no
Q9D0M5	DYL2_MOUSE	No assigned EC number	0.5222	0.7719	0.9887	yes	no
Q9UR05	DYL1_SCHPO	No assigned EC number	0.5058	0.7280	0.9764	yes	no
Q78P75	DYL2_RAT	No assigned EC number	0.5222	0.7719	0.9887	yes	no
Q24117	DYL1_DROME	No assigned EC number	0.5333	0.7719	0.9887	yes	no
Q96FJ2	DYL2_HUMAN	No assigned EC number	0.5222	0.7719	0.9887	yes	no
Q3MHR3	DYL2_BOVIN	No assigned EC number	0.5222	0.7719	0.9887	yes	no
O96860	DYL2_DROME	No assigned EC number	0.5444	0.7719	0.9887	yes	no
P63169	DYL1_RABIT	No assigned EC number	0.5111	0.7719	0.9887	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	7e-40
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	1e-31
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-19

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  127 bits (321), Expect = 7e-40
 Identities = 49/88 (55%), Positives = 62/88 (70%), Gaps = 2/88 (2%)

Query: 4  GKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTD 63
          GKAV+   DM E MQ+DA++ AA+AL+ F+V    +IA  IKKEFDK YG  W CIVG +
Sbjct: 1  GKAVVKNADMPEEMQEDAIECAAEALEKFNV--EKDIAAHIKKEFDKKYGPTWHCIVGKN 58

Query: 64 FGSFVTHCYGNFIYFRVGSLAILLFRGS 91
          FGS+VTH   +FIYF +G LA LLF+  
Sbjct: 59 FGSYVTHETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score =  106 bits (267), Expect = 1e-31
 Identities = 48/89 (53%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 1  MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAV+   DM E MQQDA+D A +AL+ F++ +  +IA +IKKEFDK Y   W CIV
Sbjct: 2  MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIV 59

Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
          G +FGS+VTH   +FIYF +G +AILLF+
Sbjct: 60 GRNFGSYVTHETKHFIYFYLGQVAILLFK 88

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 77.0 bits (189), Expect = 2e-19
 Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 11  TDMLETMQQDALDLAAKALDFF-DVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVT 69
           +DM   +Q  A   A   LD      +   +A  +KKEFD AYG  W CIVGT FGS+VT
Sbjct: 41  SDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVT 100

Query: 70  HCYGNFIYFRVGSLAILLFRGSAAP 94
           H  G F+YF +  + ILLF+ +  P
Sbjct: 101 HSTGGFLYFSIDKVYILLFKTAVEP 125

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.43
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	88.13
PF12006	313	DUF3500: Protein of unknown function (DUF3500); In	81.9

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=100.00  E-value=4.1e-41  Score=222.53  Aligned_cols=90  Identities=61%  Similarity=1.007  Sum_probs=86.5

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634            1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV   80 (114)
Q Consensus         1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i   80 (114)
                      |.+.+++|+.+|||++||++|++++.+|+++|+. +.++||..||++||++||++||||||++|||+|||++++||||++
T Consensus         1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~   79 (90)
T KOG3430|consen    1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL   79 (90)
T ss_pred             CCCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence            7889999999999999999999999999999994 349999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 033634           81 GSLAILLFRGS   91 (114)
Q Consensus        81 ~~~~~LifKt~   91 (114)
                      |.++|||||+.
T Consensus        80 g~l~illfK~~   90 (90)
T KOG3430|consen   80 GVLAILLFKCA   90 (90)
T ss_pred             ceEEEEEEecC
Confidence            99999999984

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=2.2e-40  Score=221.12  Aligned_cols=89  Identities=54%  Similarity=0.939  Sum_probs=86.9

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634            1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV   80 (114)
Q Consensus         1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i   80 (114)
                      |++.+++|+.+|||++||++|++++.+|+++|+.+  +|||++||++||++|||+||||||++|||++||++++||||++
T Consensus         2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~--kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~   79 (90)
T PTZ00059          2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL   79 (90)
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE
Confidence            78889999999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 033634           81 GSLAILLFRGS   91 (114)
Q Consensus        81 ~~~~~LifKt~   91 (114)
                      |+++|||||++
T Consensus        80 ~~~~vLlfK~~   90 (90)
T PTZ00059         80 GQVAILLFKSG   90 (90)
T ss_pred             CCEEEEEEecC
Confidence            99999999985

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=2.5e-39  Score=228.01  Aligned_cols=95  Identities=40%  Similarity=0.705  Sum_probs=89.1

Q ss_pred             CCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeC
Q 033634            3 EGKAVIGETDMLETMQQDALDLAAKALDFFDV-TEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVG   81 (114)
Q Consensus         3 ~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~-e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~   81 (114)
                      +.++.|+.+|||++||++|+++|.+|+++++. .+.++||.+||++||++|||+||||||++|||+|||++++||||++|
T Consensus        33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig  112 (128)
T PLN03058         33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID  112 (128)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence            46899999999999999999999999999863 23499999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecCCCCCCC
Q 033634           82 SLAILLFRGSAAPGSD   97 (114)
Q Consensus        82 ~~~~LifKt~~~~~~~   97 (114)
                      +++||||||+.+|+++
T Consensus       113 ~~aiLLfKt~~~~~~~  128 (128)
T PLN03058        113 KVYILLFKTAVEPLDQ  128 (128)
T ss_pred             CEEEEEEeccCccCCC
Confidence            9999999999999863

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=3.7e-39  Score=214.03  Aligned_cols=89  Identities=51%  Similarity=0.897  Sum_probs=84.6

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634            1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV   80 (114)
Q Consensus         1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i   80 (114)
                      |++.+++|+.+|||++||++|++.|.+|+++++++  +++|++||++||++|||+||||||++|||++||++++++||++
T Consensus         1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~--~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~   78 (89)
T PF01221_consen    1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDE--KEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI   78 (89)
T ss_dssp             SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence            89999999999999999999999999999999976  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 033634           81 GSLAILLFRGS   91 (114)
Q Consensus        81 ~~~~~LifKt~   91 (114)
                      ++++||||||+
T Consensus        79 ~~~~~li~kt~   89 (89)
T PF01221_consen   79 GNIAFLIFKTQ   89 (89)
T ss_dssp             TTEEEEEEEE-
T ss_pred             CCEEEEEEecC
Confidence            99999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.43  E-value=0.0021  Score=41.11  Aligned_cols=53  Identities=19%  Similarity=0.270  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHhcccCCCceEEEEeC-CcceeEEEccCcEEEEEeCCEEEEEEe
Q 033634           36 EPTEIARFIKKEFDKAYGTGWQCIVGT-DFGSFVTHCYGNFIYFRVGSLAILLFR   89 (114)
Q Consensus        36 ~~~diA~~IK~~lD~kyG~~WHcIVG~-~Fgs~vthe~~~~i~F~i~~~~~LifK   89 (114)
                      ++..+++.|.+.++++||+.+-||+++ +|....... ..|.-...++...++|+
T Consensus        23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            458899999999999999999999999 776666555 78888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=88.13  E-value=6.1  Score=31.87  Aligned_cols=55  Identities=24%  Similarity=0.343  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHhcccCCC-ceEEEEeC--------CcceeEEEccCcEEE-EEeCCEEEEEEecC
Q 033634           37 PTEIARFIKKEFDKAYGT-GWQCIVGT--------DFGSFVTHCYGNFIY-FRVGSLAILLFRGS   91 (114)
Q Consensus        37 ~~diA~~IK~~lD~kyG~-~WHcIVG~--------~Fgs~vthe~~~~i~-F~i~~~~~LifKt~   91 (114)
                      ..+.|..||+.||+..-. .+-++|-.        .|.....+....+|. |.-|+..++||||.
T Consensus       188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~  252 (345)
T PF05075_consen  188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSK  252 (345)
T ss_pred             hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeC
Confidence            478999999999997654 58888822        112222345556665 56899999999994

>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised

Probab=81.90  E-value=11  Score=30.28  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=33.3

Q ss_pred             EEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHH-HHHhcccCCCceEEEEeC
Q 033634            8 IGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFI-KKEFDKAYGTGWQCIVGT   62 (114)
Q Consensus         8 V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~I-K~~lD~kyG~~WHcIVG~   62 (114)
                      |..++|+.+.|+.+..++..-+..++.+.-+..-+.| +..||+    +|-+=+|.
T Consensus       216 l~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~~i~~~~ld~----t~faW~G~  267 (313)
T PF12006_consen  216 LAVSELTADQQELLLALIKEYLGRLPEEDAAERMAEIEEAGLDE----TYFAWAGG  267 (313)
T ss_pred             cChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccc----eEEEEecC
Confidence            6789999999999999999988877743112222233 445554    44444443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		4e-17
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		6e-17
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		7e-17
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		8e-17
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		8e-17
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		9e-17
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		1e-16
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		1e-16
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		4e-16
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		5e-16
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-15
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		4e-14
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		5e-11

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + EP +IA +IKKEFDK Y   W CIV
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNI-EP-DIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct: 4  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 91

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct: 6  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 93

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
          G +FGS+VTH   +FIYF +G +AILLF+
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIV
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 5  KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDF 64
          KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIVG +F
Sbjct: 1  KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GSFVTHCYGNFIYFRVGSLAILLFRG 90
          GS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKS 84

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E +QQ              + +  +IA FIKKEFD+ +   W C+V
Sbjct: 1  MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEK--DIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GTDFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G +FGS+VTH   +FIYF +G +A+LLF+ 
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKS 88

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 1  MLEGKAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIV 60
          M + KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIV
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GT--DFGSFVTHCYGNFIYFRVGSLAILLFRG 90
          G   +FGS+VTH   +FIYF +G +AILLF+ 
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFKS 90

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 6   AVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFG 65
           +V+   DM E MQ               V +  +IA  IKKEFD+ Y   W C+VG +FG
Sbjct: 19  SVVKNVDMTEEMQIDAIDCANQALQKYNVEK--DIAAHIKKEFDRKYDPTWHCVVGRNFG 76
Query: 66  SFVTHCYGNFIYFRVGSLAILLFR 89
           S+VTH   NFIYF +G +AILLF+
Sbjct: 77  SYVTHETKNFIYFYIGQVAILLFK 100

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 39 EIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
          +IA  +KK+ D  YG  W  IVG +FGS+VTH  G+F+YF +G LA L+F+
Sbjct: 45 DIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1yo3_A	102	Dynein light chain 1; structural genomics consorti	6e-39
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	6e-38

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  124 bits (314), Expect = 6e-39
 Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 1   MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIV 60
           ++   +V+   DM E MQ DA+D A +AL  ++V    +IA  IKKEFD+ Y   W C+V
Sbjct: 14  LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNV--EKDIAAHIKKEFDRKYDPTWHCVV 71

Query: 61  GTDFGSFVTHCYGNFIYFRVGSLAILLFR 89
           G +FGS+VTH   NFIYF +G +AILLF+
Sbjct: 72  GRNFGSYVTHETKNFIYFYIGQVAILLFK 100

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  122 bits (307), Expect = 6e-38
 Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 3  EGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGT 62
          +   ++  +D+ + +++D L ++  ALD + +    +IA  +KK+ D  YG  W  IVG 
Sbjct: 11 KSTPIVKASDITDKLKEDILTISKDALDKYQLER--DIAGTVKKQLDVKYGNTWHVIVGK 68

Query: 63 DFGSFVTHCYGNFIYFRVGSLAILLFRGS 91
          +FGS+VTH  G+F+YF +G LA L+F+ +
Sbjct: 69 NFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=4.6e-43  Score=232.63  Aligned_cols=89  Identities=49%  Similarity=0.897  Sum_probs=85.7

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEe
Q 033634            1 MLEGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRV   80 (114)
Q Consensus         1 M~~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i   80 (114)
                      |++.+++|+.+|||++||++|+++|.+|+++|+.+  ++||++||++||++|||+||||||++|||++||++++||||++
T Consensus         1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~   78 (89)
T 3rjs_A            1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI   78 (89)
T ss_dssp             --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence            88999999999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecC
Q 033634           81 GSLAILLFRGS   91 (114)
Q Consensus        81 ~~~~~LifKt~   91 (114)
                      |+++||||||+
T Consensus        79 g~~~iLlfKtg   89 (89)
T 3rjs_A           79 GQVAVLLFKSG   89 (89)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEecC
Confidence            99999999996

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-41  Score=226.46  Aligned_cols=86  Identities=37%  Similarity=0.806  Sum_probs=84.0

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCCE
Q 033634            4 GKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSL   83 (114)
Q Consensus         4 ~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~~~   83 (114)
                      ++++|+.+|||++||++|+++|.+|+++|+++  ++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus        12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~   89 (97)
T 4ds1_A           12 STPIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL   89 (97)
T ss_dssp             CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence            67999999999999999999999999999977  9999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecC
Q 033634           84 AILLFRGS   91 (114)
Q Consensus        84 ~~LifKt~   91 (114)
                      +||||||+
T Consensus        90 aiLlfKtg   97 (97)
T 4ds1_A           90 AFLVFKTA   97 (97)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999986

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=2.4e-40  Score=224.63  Aligned_cols=87  Identities=49%  Similarity=0.877  Sum_probs=83.2

Q ss_pred             CCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCC
Q 033634            3 EGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGS   82 (114)
Q Consensus         3 ~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~~   82 (114)
                      .++++|+.+|||++||++|+++|.+|+++|+++  ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~e--kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~   93 (102)
T 1yo3_A           16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ   93 (102)
T ss_dssp             --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence            467899999999999999999999999999877  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q 033634           83 LAILLFRGS   91 (114)
Q Consensus        83 ~~~LifKt~   91 (114)
                      ++||||||+
T Consensus        94 ~aiLlfKt~  102 (102)
T 1yo3_A           94 VAILLFKSG  102 (102)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	6e-37

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  118 bits (297), Expect = 6e-37
 Identities = 47/87 (54%), Positives = 62/87 (71%), Gaps = 2/87 (2%)

Query: 3  EGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGT 62
          + KAVI   DM E MQQDA+D A +AL+ +++    +IA +IKKEFDK Y   W CIVG 
Sbjct: 1  DRKAVIKNADMSEEMQQDAVDCATQALEKYNI--EKDIAAYIKKEFDKKYNPTWHCIVGR 58

Query: 63 DFGSFVTHCYGNFIYFRVGSLAILLFR 89
          +FGS+VTH   +FIYF +G +AILLF+
Sbjct: 59 NFGSYVTHETRHFIYFYLGQVAILLFK 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.1e-41  Score=222.29  Aligned_cols=87  Identities=54%  Similarity=0.948  Sum_probs=84.6

Q ss_pred             CCCcEEEeCCCCHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhcccCCCceEEEEeCCcceeEEEccCcEEEEEeCC
Q 033634            3 EGKAVIGETDMLETMQQDALDLAAKALDFFDVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGS   82 (114)
Q Consensus         3 ~~~~~V~~sdM~~emq~~ai~~~~~a~~~~~~e~~~diA~~IK~~lD~kyG~~WHcIVG~~Fgs~vthe~~~~i~F~i~~   82 (114)
                      +.+++|+.+|||++||++|+++|.+|+++|+.+  +++|++||++||++|||+||||||++|||++||++++||||++|+
T Consensus         1 e~k~vik~~DM~~em~~~a~~~~~~al~~~~~~--~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~   78 (87)
T d3e2ba1           1 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   78 (87)
T ss_dssp             CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETT
T ss_pred             CCcceEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECC
Confidence            468899999999999999999999999999987  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q 033634           83 LAILLFRGS   91 (114)
Q Consensus        83 ~~~LifKt~   91 (114)
                      ++|||||||
T Consensus        79 ~~~Ll~Ktg   87 (87)
T d3e2ba1          79 VAILLFKSG   87 (87)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999996