Citrus Sinensis ID: 033640

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL
ccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEcccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccc
ccEEEEEEccccccccHccHHHHHHHHHHHHHcccHHHcEEEEEcccEEEEccEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEccHHHEEEEEEc
mpclnistnvkldgvdtssiLSEATSTVANIIGKPEAYVMIVLKgsvpmsfggtedpaaygelvsigglnpdvNKKLSAAISAILEKKlsvpksrffikfydtkashfnFLVCL
mpclnistnvkldgvdtSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILekklsvpksrFFIKFYDTKASHFNFLVCL
MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL
********NVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC*
MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL
MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL
MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNFLVCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query114 2.2.26 [Sep-21-2011]
P81529114 Macrophage migration inhi N/A no 0.868 0.868 0.42 4e-16
P91850115 Macrophage migration inhi N/A no 0.956 0.947 0.4 5e-16
P81748114 Macrophage migration inhi N/A no 0.921 0.921 0.349 1e-14
O44786115 Macrophage migration inhi N/A no 0.956 0.947 0.390 1e-14
Q76BK2115 Macrophage migration inhi N/A no 0.956 0.947 0.363 7e-13
Q02960115 Macrophage migration inhi yes no 0.956 0.947 0.345 1e-11
A9JSE7115 Macrophage migration inhi yes no 0.956 0.947 0.327 1e-10
P34884115 Macrophage migration inhi yes no 0.956 0.947 0.318 9e-10
P30904115 Macrophage migration inhi yes no 0.956 0.947 0.318 9e-10
O55052115 Macrophage migration inhi N/A no 0.956 0.947 0.309 1e-09
>sp|P81529|MIFH_TRISP Macrophage migration inhibitory factor homolog OS=Trichinella spiralis PE=1 SV=2 Back     alignment and function desciption
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 1   MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAY 60
           MP   ++TN+K   V  S  LS  ++ V NI+ KP +YV + +     +SFGG+  PAA+
Sbjct: 1   MPIFTLNTNIKATDV-PSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTKPAAF 59

Query: 61  GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100
           G L+SIGG+ P  N+  SA +   L KKL +PK+R +I F
Sbjct: 60  GTLMSIGGIEPSRNRDHSAKLFDHLNKKLGIPKNRMYIHF 99
Tautomerization of the methyl ester of L-dopachrome. Inhibits migration of human peripheral blood mononuclear cells.
Trichinella spiralis (taxid: 6334)
EC: 5EC: .EC: 3EC: .EC: 3EC: .EC: 1EC: 2
>sp|P91850|MIFH_BRUMA Macrophage migration inhibitory factor homolog OS=Brugia malayi GN=Bm1_28435 PE=3 SV=4 Back     alignment and function description
>sp|P81748|MIFH_TRITR Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2 Back     alignment and function description
>sp|O44786|MIFH_WUCBA Macrophage migration inhibitory factor homolog OS=Wuchereria bancrofti GN=MIF PE=3 SV=3 Back     alignment and function description
>sp|Q76BK2|MIF_XENLA Macrophage migration inhibitory factor OS=Xenopus laevis GN=mif PE=1 SV=1 Back     alignment and function description
>sp|Q02960|MIF_CHICK Macrophage migration inhibitory factor OS=Gallus gallus GN=MIF PE=2 SV=3 Back     alignment and function description
>sp|A9JSE7|MIF_XENTR Macrophage migration inhibitory factor OS=Xenopus tropicalis GN=mif PE=3 SV=1 Back     alignment and function description
>sp|P34884|MIF_MOUSE Macrophage migration inhibitory factor OS=Mus musculus GN=Mif PE=1 SV=2 Back     alignment and function description
>sp|P30904|MIF_RAT Macrophage migration inhibitory factor OS=Rattus norvegicus GN=Mif PE=1 SV=4 Back     alignment and function description
>sp|O55052|MIF_MERUN Macrophage migration inhibitory factor OS=Meriones unguiculatus GN=MIF PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query114
388498604115 unknown [Lotus japonicus] 0.964 0.956 0.872 6e-49
15241023115 macrophage migration inhibitory factor f 0.964 0.956 0.881 9e-49
449532378121 PREDICTED: macrophage migration inhibito 1.0 0.942 0.843 1e-48
449532380115 PREDICTED: macrophage migration inhibito 0.964 0.956 0.863 2e-48
192910730115 light-inducible protein ATLS1 [Elaeis gu 0.964 0.956 0.854 3e-48
297806047115 macrophage migration inhibitory factor f 0.964 0.956 0.863 5e-48
449461787151 PREDICTED: macrophage migration inhibito 0.964 0.728 0.854 7e-48
238481186122 macrophage migration inhibitory factor f 0.912 0.852 0.913 8e-48
5869758115 AT-LS1 product [Arabidopsis thaliana] 0.964 0.956 0.863 8e-48
388512703121 unknown [Lotus japonicus] 1.0 0.942 0.826 1e-47
>gi|388498604|gb|AFK37368.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  197 bits (502), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 104/110 (94%)

Query: 1   MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAY 60
           MPCLN+STNV LDGVDTSSILSEATSTVA +IGKPEAYVMIVLKGSVP+SFGGTE PAAY
Sbjct: 1   MPCLNLSTNVNLDGVDTSSILSEATSTVATLIGKPEAYVMIVLKGSVPVSFGGTEQPAAY 60

Query: 61  GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNF 110
           GELVSIGGLNPDVNKKLSAAI++ILE KLSVPKSRFF+KFYDTK S+F +
Sbjct: 61  GELVSIGGLNPDVNKKLSAAIASILETKLSVPKSRFFLKFYDTKGSNFGW 110

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15241023|ref|NP_195785.1| macrophage migration inhibitory factor family protein [Arabidopsis thaliana] gi|7327824|emb|CAB82281.1| light-inducible protein ATLS1 [Arabidopsis thaliana] gi|17065566|gb|AAL32937.1| light-inducible protein ATLS1 [Arabidopsis thaliana] gi|20148493|gb|AAM10137.1| light-inducible protein ATLS1 [Arabidopsis thaliana] gi|332002988|gb|AED90371.1| macrophage migration inhibitory factor family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449532378|ref|XP_004173158.1| PREDICTED: macrophage migration inhibitory factor homolog isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449532380|ref|XP_004173159.1| PREDICTED: macrophage migration inhibitory factor homolog isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|192910730|gb|ACF06473.1| light-inducible protein ATLS1 [Elaeis guineensis] Back     alignment and taxonomy information
>gi|297806047|ref|XP_002870907.1| macrophage migration inhibitory factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297316744|gb|EFH47166.1| macrophage migration inhibitory factor family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449461787|ref|XP_004148623.1| PREDICTED: macrophage migration inhibitory factor homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|238481186|ref|NP_001154692.1| macrophage migration inhibitory factor family protein [Arabidopsis thaliana] gi|332002989|gb|AED90372.1| macrophage migration inhibitory factor family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5869758|emb|CAA41632.1| AT-LS1 product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388512703|gb|AFK44413.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query114
TAIR|locus:2149830122 AT5G01650 "AT5G01650" [Arabido 0.912 0.852 0.913 2.1e-45
TAIR|locus:2098272112 AT3G51660 "AT3G51660" [Arabido 0.894 0.910 0.480 2.1e-22
GENEDB_PFALCIPARUM|PFL1420w116 PFL1420w "macrophage migration 0.964 0.948 0.318 2.1e-13
UNIPROTKB|Q8I5C5116 MIF "Macrophage migration inhi 0.964 0.948 0.318 2.1e-13
ZFIN|ZDB-GENE-080708-1115 mif "macrophage migration inhi 0.885 0.878 0.382 3.4e-13
UNIPROTKB|Q02960115 MIF "Macrophage migration inhi 0.929 0.921 0.355 3.9e-12
MGI|MGI:96982115 Mif "macrophage migration inhi 0.929 0.921 0.327 9.4e-11
RGD|621163115 Mif "macrophage migration inhi 0.929 0.921 0.327 9.4e-11
UNIPROTKB|P14174115 MIF "Macrophage migration inhi 0.929 0.921 0.317 1.2e-10
UNIPROTKB|O55052115 MIF "Macrophage migration inhi 0.929 0.921 0.317 1.2e-10
TAIR|locus:2149830 AT5G01650 "AT5G01650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 95/104 (91%), Positives = 99/104 (95%)

Query:     1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAY 60
             MPCLN+STNV LDGVDTSSILSEA+STVA IIGKPE YVMIVLKGSVPMSFGGTEDPAAY
Sbjct:     1 MPCLNLSTNVNLDGVDTSSILSEASSTVAKIIGKPENYVMIVLKGSVPMSFGGTEDPAAY 60

Query:    61 GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104
             GELVSIGGLN DVNKKLSAA+SAILE KLSVPKSRFF+KFYDTK
Sbjct:    61 GELVSIGGLNADVNKKLSAAVSAILETKLSVPKSRFFLKFYDTK 104
GO:0003674 "molecular_function" evidence=ND
GO:0006954 "inflammatory response" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0051707 "response to other organism" evidence=ISS
TAIR|locus:2098272 AT3G51660 "AT3G51660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL1420w PFL1420w "macrophage migration inhibitory factor homolog, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I5C5 MIF "Macrophage migration inhibitory factor homologue" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080708-1 mif "macrophage migration inhibitory factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q02960 MIF "Macrophage migration inhibitory factor" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:96982 Mif "macrophage migration inhibitory factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621163 Mif "macrophage migration inhibitory factor (glycosylation-inhibiting factor)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P14174 MIF "Macrophage migration inhibitory factor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O55052 MIF "Macrophage migration inhibitory factor" [Meriones unguiculatus (taxid:10047)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P30904MIF_RAT5, ., 3, ., 3, ., 1, 20.31810.95610.9478yesno
Q6DN04MIF_MACMU5, ., 3, ., 3, ., 1, 20.30900.95610.9478yesno
A9JSE7MIF_XENTR5, ., 3, ., 3, ., 1, 20.32720.95610.9478yesno
P34884MIF_MOUSE5, ., 3, ., 3, ., 1, 20.31810.95610.9478yesno
P14174MIF_HUMAN5, ., 3, ., 3, ., 1, 20.30900.95610.9478yesno
Q02960MIF_CHICK5, ., 3, ., 3, ., 1, 20.34540.95610.9478yesno
P80177MIF_BOVIN5, ., 3, ., 3, ., 1, 20.30900.95610.9478yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.3.120.824
3rd Layer5.3.30.766
3rd Layer5.3.2.10.824
3rd Layer5.3.20.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
PTZ00397116 PTZ00397, PTZ00397, macrophage migration inhibitio 3e-25
pfam01187114 pfam01187, MIF, Macrophage migration inhibitory fa 8e-20
PTZ00450113 PTZ00450, PTZ00450, macrophage migration inhibitor 3e-16
>gnl|CDD|240401 PTZ00397, PTZ00397, macrophage migration inhibition factor-like protein; Provisional Back     alignment and domain information 
 Score = 91.0 bits (226), Expect = 3e-25
 Identities = 38/110 (34%), Positives = 60/110 (54%)

Query: 1   MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAY 60
           MPC  +STNV        + LS+  + +A+++GKP +Y+M        M FGG+ D   +
Sbjct: 1   MPCCQVSTNVNATDDQADAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCF 60

Query: 61  GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNF 110
             + SIGG++   N  ++AAI+ IL   L V   R +I+F D  A ++ F
Sbjct: 61  VRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIEFKDCSAQNWAF 110

Length = 116
>gnl|CDD|201647 pfam01187, MIF, Macrophage migration inhibitory factor (MIF) Back     alignment and domain information
>gnl|CDD|185629 PTZ00450, PTZ00450, macrophage migration inhibitory factor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 114
PTZ00450113 macrophage migration inhibitory factor-like protei 100.0
PF01187114 MIF: Macrophage migration inhibitory factor (MIF); 100.0
PTZ00397116 macrophage migration inhibition factor-like protei 100.0
KOG1759115 consensus Macrophage migration inhibitory factor [ 100.0
PF1455282 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AA 99.59
PRK0196464 4-oxalocrotonate tautomerase; Provisional 99.47
cd0049158 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tauto 99.46
PF0136160 Tautomerase: Tautomerase enzyme; InterPro: IPR0043 99.46
PRK0222061 4-oxalocrotonate tautomerase; Provisional 99.45
PRK0074562 4-oxalocrotonate tautomerase; Provisional 99.45
TIGR0001363 taut 4-oxalocrotonate tautomerase family enzyme. 4 99.44
PRK0228960 4-oxalocrotonate tautomerase; Provisional 99.29
cd00580113 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase ( 99.29
COG194269 Uncharacterized protein, 4-oxalocrotonate tautomer 99.23
PF08921108 DUF1904: Domain of unknown function (DUF1904); Int 99.15
PRK0127176 4-oxalocrotonate tautomerase; Provisional 99.05
PF14832136 Tautomerase_3: Putative oxalocrotonate tautomerase 99.05
PRK0196464 4-oxalocrotonate tautomerase; Provisional 98.99
PRK0228960 4-oxalocrotonate tautomerase; Provisional 98.96
PRK0074562 4-oxalocrotonate tautomerase; Provisional 98.95
PRK0222061 4-oxalocrotonate tautomerase; Provisional 98.94
COG194269 Uncharacterized protein, 4-oxalocrotonate tautomer 98.86
PRK15031126 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 98.82
PRK0127176 4-oxalocrotonate tautomerase; Provisional 98.68
PF0136160 Tautomerase: Tautomerase enzyme; InterPro: IPR0043 98.64
cd0049158 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tauto 98.62
TIGR0001363 taut 4-oxalocrotonate tautomerase family enzyme. 4 98.59
PF02962124 CHMI: 5-carboxymethyl-2-hydroxymuconate isomerase; 98.33
COG3232127 HpaF 5-carboxymethyl-2-hydroxymuconate isomerase [ 97.68
PTZ00397116 macrophage migration inhibition factor-like protei 97.65
PF1455282 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AA 97.44
PF14832136 Tautomerase_3: Putative oxalocrotonate tautomerase 96.54
PTZ00450113 macrophage migration inhibitory factor-like protei 95.92
PF01187114 MIF: Macrophage migration inhibitory factor (MIF); 95.06
TIGR02544193 III_secr_YscJ type III secretion apparatus lipopro 94.15
cd00580113 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase ( 93.06
KOG1759115 consensus Macrophage migration inhibitory factor [ 91.63
TIGR02830186 spore_III_AG stage III sporulation protein AG. CC 89.41
PF09581188 Spore_III_AF: Stage III sporulation protein AF (Sp 88.18
PRK15348249 type III secretion system lipoprotein SsaJ; Provis 86.08
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 85.67
PF08921108 DUF1904: Domain of unknown function (DUF1904); Int 85.53
PF0259477 DUF167: Uncharacterised ACR, YggU family COG1872; 85.23
COG3887 655 Predicted signaling protein consisting of a modifi 85.07
PRK00084159 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate 83.91
PRK0509095 hypothetical protein; Validated 83.27
PF01514206 YscJ_FliF: Secretory protein of YscJ/FliF family; 83.14
PRK0064796 hypothetical protein; Validated 82.33
TIGR00151155 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate s 82.04
COG0245159 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate s 81.51
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 80.38
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 80.37
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-42  Score=218.17  Aligned_cols=110  Identities=33%  Similarity=0.555  Sum_probs=102.0

Q ss_pred             CCeEEEEeCCCCCCcChHHHHHHHHH-HHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHH
Q 033640            1 MPCLNISTNVKLDGVDTSSILSEATS-TVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSA   79 (114)
Q Consensus         1 MP~i~i~tn~~~~~~~~~~~~~~l~~-~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~   79 (114)
                      ||+++|+||++.++++ ++++++.+. ++++++||||+|+||++++++.|.|||+++||||++|+++|++++++|+++++
T Consensus         1 MP~~~i~tNv~~~~~~-~~~l~~~~~~~~a~~lgKPe~yvmV~~~~~~~m~fgGs~~P~A~~~l~siG~~~~~~n~~~s~   79 (113)
T PTZ00450          1 MPFLQTIVSVSLDDQK-RANLSQAYRMICREELGKPEDFVMTAFSDSTPMSFQGSTAPAAYVRVEAWGEYAPSKPKMMTP   79 (113)
T ss_pred             CCEEEEEecCCCcccC-HHHHHHHHHHHHHHhhCCCHHHEEEEEeCCceEEEcCCCCCEEEEEEEEecCcCHHHHHHHHH
Confidence            9999999999988874 556665555 66699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640           80 AISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC  113 (114)
Q Consensus        80 ~i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~  113 (114)
                      +||++++++||||++||||.|+|.  ++|||||-
T Consensus        80 ~i~~~l~~~LgIp~dRiYI~f~d~--~~~G~nG~  111 (113)
T PTZ00450         80 RITAAITKECGIPAERIYVFYYST--KHCGWNGT  111 (113)
T ss_pred             HHHHHHHHHcCCCcccEEEEEEcH--HHcccCcE
Confidence            999999999999999999999995  79999994

>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response [] Back     alignment and domain information
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional Back     alignment and domain information
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms] Back     alignment and domain information
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C Back     alignment and domain information
>PRK01964 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones Back     alignment and domain information
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers Back     alignment and domain information
>PRK02220 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>PRK00745 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme Back     alignment and domain information
>PRK02289 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate Back     alignment and domain information
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only] Back     alignment and domain information
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins Back     alignment and domain information
>PRK01271 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A Back     alignment and domain information
>PRK01964 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>PRK02289 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>PRK00745 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>PRK02220 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only] Back     alignment and domain information
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional Back     alignment and domain information
>PRK01271 4-oxalocrotonate tautomerase; Provisional Back     alignment and domain information
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers Back     alignment and domain information
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones Back     alignment and domain information
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme Back     alignment and domain information
>PF02962 CHMI: 5-carboxymethyl-2-hydroxymuconate isomerase; InterPro: IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase transforms 5-carboxymethyl-2-hydroxy-muconic acid into 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid during the third step of the homoprotocatechuate catabolic pathway [] Back     alignment and domain information
>COG3232 HpaF 5-carboxymethyl-2-hydroxymuconate isomerase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional Back     alignment and domain information
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C Back     alignment and domain information
>PF14832 Tautomerase_3: Putative oxalocrotonate tautomerase enzyme; PDB: 3C6V_C 3N4D_I 3N4G_C 3N4H_A 2FLZ_C 3MF8_A 3MF7_A 2FLT_A Back     alignment and domain information
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional Back     alignment and domain information
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response [] Back     alignment and domain information
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family Back     alignment and domain information
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate Back     alignment and domain information
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms] Back     alignment and domain information
>TIGR02830 spore_III_AG stage III sporulation protein AG Back     alignment and domain information
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives) Back     alignment and domain information
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins Back     alignment and domain information
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function Back     alignment and domain information
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed Back     alignment and domain information
>PRK05090 hypothetical protein; Validated Back     alignment and domain information
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region Back     alignment and domain information
>PRK00647 hypothetical protein; Validated Back     alignment and domain information
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Back     alignment and domain information
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism] Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
2xcz_A115 Crystal Structure Of Macrophage Migration Inhibitor 2e-16
1hfo_A113 The Structure Of The Macrophage Migration Inhibitor 4e-16
4dh4_A114 Macrophage Migration Inhibitory Factor Toxoplasma G 9e-15
1uiz_A115 Crystal Structure Of Macrophage Migration Inhibitor 5e-14
2wkf_A125 Crystal Structure Of Macrophage Migration Inhibitor 2e-13
3gac_A117 Structure Of Mif With Hpp Length = 117 3e-13
2wkb_A125 Crystal Structure Of Macrophage Migration Inhibitor 3e-12
2wkf_B125 Crystal Structure Of Macrophage Migration Inhibitor 4e-12
3fwt_A133 Crystal Structure Of Leishmania Major Mif2 Length = 5e-11
3hof_A123 Structure Of Macrophage Migration Inhibitory Factor 1e-10
1gif_A115 Human Glycosylation-Inhibiting Factor Length = 115 1e-10
1mff_A114 Macrophage Migration Inhibitory Factor Y95f Mutant 2e-10
1mif_A115 Macrophage Migration Inhibitory Factor (Mif) Length 2e-10
4evg_A114 Crystal Structure Of Mif L46a Mutant Length = 114 3e-10
1mfi_A114 Crystal Structure Of Macrophage Migration Inhibitor 3e-10
4etg_A114 Crystal Structure Of Mif L46g Mutant Length = 114 4e-10
1ca7_A114 Macrophage Migration Inhibitory Factor (Mif) With H 5e-10
1gcz_A122 Macrophage Migration Inhibitory Factor (Mif) Comple 6e-10
4eui_A114 Crystal Structure Of Mif L46f Mutant Length = 114 7e-10
1cgq_A115 Macrophage Migration Inhibitory Factor (Mif) With A 8e-10
1p1g_A114 Macrophage Migration Inhibitory Factor (Mif) With P 8e-10
1fim_A114 Macrophage Migration Inhibitory Factor Length = 114 2e-09
3fwu_A133 Crystal Structure Of Leishmania Major Mif1 Length = 3e-09
3b64_A112 Macrophage Migration Inhibitory Factor (Mif) From L 1e-08
3t5s_A135 Structure Of Macrophage Migration Inhibitory Factor 5e-08
2os5_A119 Macrophage Migration Inhibitory Factor From Ancylos 2e-06
3rf4_A116 Ancylostoma Ceylanicum Mif In Complex With Furosemi 1e-05
1dpt_A117 D-Dopachrome Tautomerase Length = 117 5e-05
>pdb|2XCZ|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor Homologue From Prochlorococcus Marinus Length = 115 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 1   MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAY 60
           MP +NI  +V     D +S+L E +S +A ++GKPE YVM  L+  VPM+F G  +P  Y
Sbjct: 1   MPLINIQASVPAV-ADANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTCY 59
Query: 61  GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHFNF 110
            E+ SIG L+    +++S  +   +E+ L +P  R +I F D  A  + +
Sbjct: 60  VEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIGFEDVPARLWGW 109
>pdb|1HFO|A Chain A, The Structure Of The Macrophage Migration Inhibitory Factor From Trichinella Spiralis. Length = 113 Back     alignment and structure
>pdb|4DH4|A Chain A, Macrophage Migration Inhibitory Factor Toxoplasma Gondii Length = 114 Back     alignment and structure
>pdb|1UIZ|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor From Xenopus Laevis. Length = 115 Back     alignment and structure
>pdb|2WKF|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor From Plasmodium Falciparum Length = 125 Back     alignment and structure
>pdb|3GAC|A Chain A, Structure Of Mif With Hpp Length = 117 Back     alignment and structure
>pdb|2WKB|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor From Plasmodium Berghei Length = 125 Back     alignment and structure
>pdb|2WKF|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory Factor From Plasmodium Falciparum Length = 125 Back     alignment and structure
>pdb|3FWT|A Chain A, Crystal Structure Of Leishmania Major Mif2 Length = 133 Back     alignment and structure
>pdb|3HOF|A Chain A, Structure Of Macrophage Migration Inhibitory Factor (Mif) With Caffeic Acid At 1.9a Resolution Length = 123 Back     alignment and structure
>pdb|1GIF|A Chain A, Human Glycosylation-Inhibiting Factor Length = 115 Back     alignment and structure
>pdb|1MFF|A Chain A, Macrophage Migration Inhibitory Factor Y95f Mutant Length = 114 Back     alignment and structure
>pdb|1MIF|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Length = 115 Back     alignment and structure
>pdb|4EVG|A Chain A, Crystal Structure Of Mif L46a Mutant Length = 114 Back     alignment and structure
>pdb|1MFI|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory Factor Complexed With (E)-2-Fluoro-P-Hydroxycinnamate Length = 114 Back     alignment and structure
>pdb|4ETG|A Chain A, Crystal Structure Of Mif L46g Mutant Length = 114 Back     alignment and structure
>pdb|1CA7|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With Hydroxphenylpyruvate Length = 114 Back     alignment and structure
>pdb|1GCZ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Complexed With Inhibitor. Length = 122 Back     alignment and structure
>pdb|4EUI|A Chain A, Crystal Structure Of Mif L46f Mutant Length = 114 Back     alignment and structure
>pdb|1CGQ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With Alanine Inserted Between Pro-1 And Met-2 Length = 115 Back     alignment and structure
>pdb|1P1G|A Chain A, Macrophage Migration Inhibitory Factor (Mif) With Pro-1 Mutated To Gly-1 Length = 114 Back     alignment and structure
>pdb|1FIM|A Chain A, Macrophage Migration Inhibitory Factor Length = 114 Back     alignment and structure
>pdb|3FWU|A Chain A, Crystal Structure Of Leishmania Major Mif1 Length = 133 Back     alignment and structure
>pdb|3B64|A Chain A, Macrophage Migration Inhibitory Factor (Mif) From LEISHMANIA MAJOR Length = 112 Back     alignment and structure
>pdb|3T5S|A Chain A, Structure Of Macrophage Migration Inhibitory Factor From Giardia Lamblia Length = 135 Back     alignment and structure
>pdb|2OS5|A Chain A, Macrophage Migration Inhibitory Factor From Ancylostoma Ceylanicum Length = 119 Back     alignment and structure
>pdb|3RF4|A Chain A, Ancylostoma Ceylanicum Mif In Complex With Furosemide Length = 116 Back     alignment and structure
>pdb|1DPT|A Chain A, D-Dopachrome Tautomerase Length = 117 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query114
2wkb_A125 Macrophage migration inhibitory factor; cytokine; 9e-43
3fwt_A133 Macrophage migration inhibitory factor-like protei 1e-42
3b64_A112 Macrophage migration inhibitory factor-like protei 1e-41
3fwu_A133 Macrophage migration inhibitory factor-like protei 3e-41
3t5s_A135 Gilaa.00834.A, macrophage migration inhibitory fac 3e-41
2xcz_A115 Possible ATLS1-like light-inducible protein; cytok 3e-40
1uiz_A115 MIF, macrophage migration inhibitory factor; cytok 6e-40
2os5_A119 Acemif; macrophage migration inhibitory factor, cy 1e-39
3djh_A114 Macrophage migration inhibitory factor; homotrimer 1e-38
1hfo_A113 Migration inhibitory factor; tautomerase; 1.65A {T 2e-38
3kan_A117 D-dopachrome tautomerase; immune response, cytokin 6e-36
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A* Length = 125 Back     alignment and structure
 Score =  135 bits (341), Expect = 9e-43
 Identities = 37/107 (34%), Positives = 55/107 (51%)

Query: 2   PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYG 61
           PC  + TN+ +      + LSE    ++NI+GKP AY+M        + F G+ +   + 
Sbjct: 1   PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFV 60

Query: 62  ELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHF 108
            L SIGG+N   N  L+  I+ IL   LSV   R +I+F D  A +F
Sbjct: 61  RLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDCSAQNF 107
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major} Length = 133 Back     alignment and structure
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} Length = 112 Back     alignment and structure
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} Length = 133 Back     alignment and structure
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} Length = 135 Back     alignment and structure
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus} Length = 115 Back     alignment and structure
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3 Length = 115 Back     alignment and structure
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A* Length = 119 Back     alignment and structure
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* 3l5r_A* 3l5s_A* 3l5t_A* 3l5u_A* ... Length = 114 Back     alignment and structure
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3 Length = 113 Back     alignment and structure
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} PDB: 1dpt_A* 3ker_A* Length = 117 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query114
3djh_A114 Macrophage migration inhibitory factor; homotrimer 100.0
4dh4_A114 MIF; trimer, isomerase; 1.82A {Toxoplasma gondii} 100.0
3kan_A117 D-dopachrome tautomerase; immune response, cytokin 100.0
3t5s_A135 Gilaa.00834.A, macrophage migration inhibitory fac 100.0
3fwu_A133 Macrophage migration inhibitory factor-like protei 100.0
3fwt_A133 Macrophage migration inhibitory factor-like protei 100.0
1uiz_A115 MIF, macrophage migration inhibitory factor; cytok 100.0
2xcz_A115 Possible ATLS1-like light-inducible protein; cytok 100.0
2os5_A119 Acemif; macrophage migration inhibitory factor, cy 100.0
1hfo_A113 Migration inhibitory factor; tautomerase; 1.65A {T 100.0
2wkb_A125 Macrophage migration inhibitory factor; cytokine; 100.0
3b64_A112 Macrophage migration inhibitory factor-like protei 100.0
2aal_A131 Malonate semialdehyde decarboxylase; tautomerase s 99.98
1mww_A128 Hypothetical protein HI1388.1; structural genomics 99.96
3n4h_A148 Putative tautomerase; CG10062, CIS-3-chloroacrylic 99.92
3mlc_A136 FG41 malonate semialdehyde decarboxylase; tautomer 99.9
3c6v_A161 Probable tautomerase/dehalogenase AU4130; aspergil 99.87
3mf7_A149 CIS-3-chloroacrylic acid dehalogenase; beta-alpha- 99.76
1u9d_A122 Hypothetical protein VC0714; structural genomics, 99.74
2opa_A61 Probable tautomerase YWHB; homohexamer, 4-oxalocro 99.65
1otf_A62 4-oxalocrotonate tautomerase; isomerase; 1.90A {Ps 99.63
3abf_A64 4-oxalocrotonate tautomerase; isomerase; 1.94A {Th 99.6
3m21_A67 Probable tautomerase HP_0924; 4-oxalocrotonate tau 99.58
3m20_A62 4-oxalocrotonate tautomerase, putative; DMPI, ther 99.58
3ry0_A65 Putative tautomerase; oxalocrotonate tautomerase f 99.55
3mb2_A72 4-oxalocrotonate tautomerase family enzyme - ALPH; 99.53
2x4k_A63 4-oxalocrotonate tautomerase; isomerase; 1.10A {St 99.52
3ej9_A76 Alpha-subunit of trans-3-chloroacrylic acid dehal; 99.51
3e6q_A146 Putative 5-carboxymethyl-2-hydroxymuconate isomer; 99.46
1otg_A125 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A 99.37
1gyx_A76 YDCE, B1461, hypothetical protein YDCE; tautomeras 99.36
3abf_A64 4-oxalocrotonate tautomerase; isomerase; 1.94A {Th 99.3
3ej9_B70 Beta-subunit of trans-3-chloroacrylic acid dehalo; 99.3
2x4k_A63 4-oxalocrotonate tautomerase; isomerase; 1.10A {St 99.17
3mb2_A72 4-oxalocrotonate tautomerase family enzyme - ALPH; 99.09
3ej9_A76 Alpha-subunit of trans-3-chloroacrylic acid dehal; 98.93
3n4h_A148 Putative tautomerase; CG10062, CIS-3-chloroacrylic 98.73
2aal_A131 Malonate semialdehyde decarboxylase; tautomerase s 98.73
3m20_A62 4-oxalocrotonate tautomerase, putative; DMPI, ther 98.72
3m21_A67 Probable tautomerase HP_0924; 4-oxalocrotonate tau 98.65
3mlc_A136 FG41 malonate semialdehyde decarboxylase; tautomer 98.65
3mb2_B72 4-oxalocrotonate tautomerase family enzyme - beta; 98.64
3ry0_A65 Putative tautomerase; oxalocrotonate tautomerase f 98.63
2opa_A61 Probable tautomerase YWHB; homohexamer, 4-oxalocro 98.58
3c6v_A161 Probable tautomerase/dehalogenase AU4130; aspergil 98.56
3mf7_A149 CIS-3-chloroacrylic acid dehalogenase; beta-alpha- 98.55
1otf_A62 4-oxalocrotonate tautomerase; isomerase; 1.90A {Ps 98.53
1mww_A128 Hypothetical protein HI1388.1; structural genomics 98.45
2wkb_A125 Macrophage migration inhibitory factor; cytokine; 98.11
3ej9_B70 Beta-subunit of trans-3-chloroacrylic acid dehalo; 98.08
3b64_A112 Macrophage migration inhibitory factor-like protei 98.02
1gyx_A76 YDCE, B1461, hypothetical protein YDCE; tautomeras 98.02
1hfo_A113 Migration inhibitory factor; tautomerase; 1.65A {T 97.97
2xcz_A115 Possible ATLS1-like light-inducible protein; cytok 97.91
1uiz_A115 MIF, macrophage migration inhibitory factor; cytok 97.88
1u9d_A122 Hypothetical protein VC0714; structural genomics, 97.86
2os5_A119 Acemif; macrophage migration inhibitory factor, cy 97.8
3t5s_A135 Gilaa.00834.A, macrophage migration inhibitory fac 97.4
3fwu_A133 Macrophage migration inhibitory factor-like protei 97.33
4dh4_A114 MIF; trimer, isomerase; 1.82A {Toxoplasma gondii} 97.2
3fwt_A133 Macrophage migration inhibitory factor-like protei 96.98
3djh_A114 Macrophage migration inhibitory factor; homotrimer 96.91
3mb2_B72 4-oxalocrotonate tautomerase family enzyme - beta; 96.68
1otg_A125 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A 95.84
3kan_A117 D-dopachrome tautomerase; immune response, cytokin 95.52
2y9j_Y170 Lipoprotein PRGK, protein PRGK; protein transport, 91.25
1n91_A108 ORF, hypothetical protein; alpha+beta, northeast s 88.28
3e6q_A146 Putative 5-carboxymethyl-2-hydroxymuconate isomer; 86.44
1jwq_A179 N-acetylmuramoyl-L-alanine amidase CWLV; open alph 82.0
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ... Back     alignment and structure
Probab=100.00  E-value=3.5e-42  Score=217.86  Aligned_cols=111  Identities=30%  Similarity=0.533  Sum_probs=108.6

Q ss_pred             CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHHH
Q 033640            2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI   81 (114)
Q Consensus         2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~i   81 (114)
                      |+++++||++.+++ +++|++++++++|+++|||++||||+++++++|+|||+++||+|++|+++|++++++|++++++|
T Consensus         1 P~i~~~TNv~~~~~-~~~~~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i   79 (114)
T 3djh_A            1 PMFIVNTNVPRASV-PDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLL   79 (114)
T ss_dssp             CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHH
T ss_pred             CEEEEEecCCcccc-cHHHHHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcCcCCCEEEEEEEEccCCCHHHHHHHHHHH
Confidence            99999999999886 68999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640           82 SAILEKKLSVPKSRFFIKFYDTKASHFNFLVC  113 (114)
Q Consensus        82 ~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~  113 (114)
                      +++++++|||+++|+||.|+|++++||||||-
T Consensus        80 ~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G~  111 (114)
T 3djh_A           80 CGLLAERLRISPDRVYINYYDMNAANVGWNNS  111 (114)
T ss_dssp             HHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred             HHHHHHHhCcCcceEEEEEEECCHHHeeECCE
Confidence            99999999999999999999999999999994
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii} Back     alignment and structure
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A* Back     alignment and structure
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} Back     alignment and structure
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} Back     alignment and structure
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major} Back     alignment and structure
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3 Back     alignment and structure
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus} Back     alignment and structure
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A* Back     alignment and structure
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3 Back     alignment and structure
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A* Back     alignment and structure
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} Back     alignment and structure
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A Back     alignment and structure
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4 Back     alignment and structure
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A Back     alignment and structure
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A Back     alignment and structure
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293} Back     alignment and structure
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A Back     alignment and structure
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5 Back     alignment and structure
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A* Back     alignment and structure
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A Back     alignment and structure
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus} Back     alignment and structure
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A Back     alignment and structure
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus} Back     alignment and structure
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes} Back     alignment and structure
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus} Back     alignment and structure
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus} Back     alignment and structure
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A Back     alignment and structure
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2 Back     alignment and structure
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A* Back     alignment and structure
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus} Back     alignment and structure
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B Back     alignment and structure
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus} Back     alignment and structure
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus} Back     alignment and structure
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A Back     alignment and structure
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A Back     alignment and structure
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A Back     alignment and structure
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus} Back     alignment and structure
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A Back     alignment and structure
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A Back     alignment and structure
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus} Back     alignment and structure
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes} Back     alignment and structure
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A* Back     alignment and structure
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293} Back     alignment and structure
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A Back     alignment and structure
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A Back     alignment and structure
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4 Back     alignment and structure
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A* Back     alignment and structure
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B Back     alignment and structure
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} Back     alignment and structure
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A* Back     alignment and structure
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3 Back     alignment and structure
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus} Back     alignment and structure
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3 Back     alignment and structure
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5 Back     alignment and structure
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A* Back     alignment and structure
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} Back     alignment and structure
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} Back     alignment and structure
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii} Back     alignment and structure
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major} Back     alignment and structure
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ... Back     alignment and structure
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus} Back     alignment and structure
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2 Back     alignment and structure
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A* Back     alignment and structure
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp} Back     alignment and structure
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A Back     alignment and structure
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 114
d1uiza_115 d.80.1.3 (A:) Microphage migration inhibition fact 3e-40
d1hfoa_113 d.80.1.3 (A:) Microphage migration inhibition fact 4e-39
d2gdga1114 d.80.1.3 (A:1-114) Microphage migration inhibition 6e-38
d1dpta_117 d.80.1.3 (A:) D-dopachrome tautomerase {Human (Hom 2e-35
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 115 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  127 bits (321), Expect = 3e-40
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 1/108 (0%)

Query: 1   MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAY 60
           MP   I TNV  D V   ++LS+ T  +A   GKP  Y+ I +     MSFG + DP A 
Sbjct: 1   MPVFTIRTNVCRDSV-PDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAV 59

Query: 61  GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKASHF 108
             L SIG +    NK  +  +  IL K+L++P +R +I +YD  A++ 
Sbjct: 60  CSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANV 107
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]} Length = 113 Back     information, alignment and structure
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query114
d1uiza_115 Microphage migration inhibition factor (MIF) {Afri 100.0
d1hfoa_113 Microphage migration inhibition factor (MIF) {Tric 100.0
d2gdga1114 Microphage migration inhibition factor (MIF) {Mous 100.0
d1dpta_117 D-dopachrome tautomerase {Human (Homo sapiens) [Ta 100.0
d1mwwa_120 Hypothetical protein HI1388.1 {Haemophilus influen 99.93
d2aala1129 Malonate semialdehyde decarboxylase, MSAD {Pseudom 99.91
d1otfa_59 4-oxalocrotonate tautomerase {Pseudomonas sp., Dmp 99.56
d1s0ya_62 Trans-3-chloroacrylic acid dehalogenase alpha-subu 99.51
d1gyxa_76 4-oxalocrotonate tautomerase homologue YdcE {Esche 99.14
d1u9da_122 Hypothetical protein VC0714 {Vibrio cholerae [TaxI 98.81
d1otfa_59 4-oxalocrotonate tautomerase {Pseudomonas sp., Dmp 98.65
d1s0ya_62 Trans-3-chloroacrylic acid dehalogenase alpha-subu 98.61
d2aala1129 Malonate semialdehyde decarboxylase, MSAD {Pseudom 98.54
d1gyxa_76 4-oxalocrotonate tautomerase homologue YdcE {Esche 98.15
d1otga_125 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) 98.13
d1mwwa_120 Hypothetical protein HI1388.1 {Haemophilus influen 97.97
d1s0yb_55 Trans-3-chloroacrylic acid dehalogenase beta-subun 97.44
d2gdga1114 Microphage migration inhibition factor (MIF) {Mous 96.15
d1hfoa_113 Microphage migration inhibition factor (MIF) {Tric 95.98
d1uiza_115 Microphage migration inhibition factor (MIF) {Afri 95.81
d1dpta_117 D-dopachrome tautomerase {Human (Homo sapiens) [Ta 94.27
d1s0yb_55 Trans-3-chloroacrylic acid dehalogenase beta-subun 93.06
d1jwqa_179 N-acetylmuramoyl-L-alanine amidase CwlV {Paenibaci 85.8
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 80.57
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1.1e-44  Score=228.14  Aligned_cols=112  Identities=36%  Similarity=0.588  Sum_probs=109.2

Q ss_pred             CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCccEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChHHhHHHHHH
Q 033640            1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA   80 (114)
Q Consensus         1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~m~~gg~~~p~~~v~l~~~~~~~~~~~~~~~~~   80 (114)
                      ||+++|+||++.++. +++|++++++++|+++|||++||||+++++++|+|||+++||+|++|+++|++++++|++++++
T Consensus         1 MP~i~i~TNv~~~~~-~~~~~~~ls~~ia~~lgKpe~~vmv~v~~~~~m~fggs~~P~a~~~v~siG~l~~~~n~~~s~~   79 (115)
T d1uiza_           1 MPVFTIRTNVCRDSV-PDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKL   79 (115)
T ss_dssp             CCEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHH
T ss_pred             CCeEEEEecCCchhC-hHHHHHHHHHHHHHHHCCCHHHEEEEEcCCceEEeCCCCCcEEEEEEEEEcCCChhhhHHHHHH
Confidence            999999999998765 7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCcEEEEEEeCCCCCcccccc
Q 033640           81 ISAILEKKLSVPKSRFFIKFYDTKASHFNFLVC  113 (114)
Q Consensus        81 i~~~l~~~Lgi~~~ri~I~f~~~~~~~~g~~g~  113 (114)
                      |+++++++||||++|+||.|+|++++||||||-
T Consensus        80 i~~~l~~~LgI~~~Riyi~f~d~~~~~~G~nG~  112 (115)
T d1uiza_          80 LCDILTKQLNIPANRVYINYYDLNAANVGWNGS  112 (115)
T ss_dssp             HHHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred             HHHHHHHHcCCCcceEEEEEEECCHHHeeECcE
Confidence            999999999999999999999999999999993
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]} Back     information, alignment and structure
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]} Back     information, alignment and structure
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]} Back     information, alignment and structure
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]} Back     information, alignment and structure
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u9da_ d.80.1.5 (A:) Hypothetical protein VC0714 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]} Back     information, alignment and structure
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]} Back     information, alignment and structure
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]} Back     information, alignment and structure
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1s0yb_ d.80.1.1 (B:) Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2 {Pseudomonas pavonaceae [TaxId: 47881]} Back     information, alignment and structure
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]} Back     information, alignment and structure
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s0yb_ d.80.1.1 (B:) Trans-3-chloroacrylic acid dehalogenase beta-subunit, CaaD2 {Pseudomonas pavonaceae [TaxId: 47881]} Back     information, alignment and structure
>d1jwqa_ c.56.5.6 (A:) N-acetylmuramoyl-L-alanine amidase CwlV {Paenibacillus polymyxa [TaxId: 1406]} Back     information, alignment and structure
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure