Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 113
cd03449 128
cd03449, R_hydratase, (R)-hydratase [(R)-specific
5e-20 cd03441 127
cd03441, R_hydratase_like, (R)-hydratase [(R)-spec
4e-15 PRK13693 142
PRK13693, PRK13693, (3R)-hydroxyacyl-ACP dehydrata
1e-10 cd03453 127
cd03453, SAV4209_like, SAV4209_like
6e-10 pfam01575 123
pfam01575, MaoC_dehydratas, MaoC like domain
1e-09 COG2030 159
COG2030, MaoC, Acyl dehydratase [Lipid metabolism]
9e-09 cd03446 140
cd03446, MaoC_like, MoaC_like Similar to the MaoC
8e-08 PRK08190 466
PRK08190, PRK08190, bifunctional enoyl-CoA hydrata
1e-07 cd03452 142
cd03452, MaoC_C, MaoC_C The C-terminal hot dog fol
9e-06 cd03447 126
cd03447, FAS_MaoC, FAS_MaoC, the MaoC-like hot dog
4e-05 cd03451 146
cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopi
9e-05 PRK11563 675
PRK11563, PRK11563, bifunctional aldehyde dehydrog
2e-04 TIGR02278 663
TIGR02278, PaaN-DH, phenylacetic acid degradation
3e-04 cd03455 123
cd03455, SAV4209, SAV4209 is a Streptomyces avermi
0.001
>gnl|CDD|239533 cd03449, R_hydratase, (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway
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Score = 78.4 bits (194), Expect = 5e-20
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI 84
LK GD TR + EDV ++++S D NP+H + E A+ F R+ HGML AS+ +
Sbjct: 1 LKVGDSASLTRTITEEDVELFAELSGDFNPIHLDEEYAKKTRFGGRIAHGMLTASLISAV 60
Query: 85 ISSHFVSP-TV----SFSF 98
+ + P T+ S F
Sbjct: 61 LGTLLPGPGTIYLSQSLRF 79
(R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain. Length = 128
>gnl|CDD|239525 cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA hydratase]
Back Show alignment and domain information
Score = 65.7 bits (161), Expect = 4e-15
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 28 GDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISS 87
G++ R + D+ ++++S D NP+H + E A+ AGF R+ HGML S+ ++
Sbjct: 1 GELDSSGRTVTEADIALFARLSGDPNPIHVDPEYAKAAGFGGRIAHGMLTLSLASGLLVQ 60
Query: 88 HF 89
Sbjct: 61 WL 62
Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. Length = 127
>gnl|CDD|184249 PRK13693, PRK13693, (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Back Show alignment and domain information
Score = 54.5 bits (131), Expect = 1e-10
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 14 LRYFSSLEPRILKTGDILRQTRI-FSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLV 72
LR FSS+ K GD L + + +D+V Y+ VS D NP+H++ E A+ G D +
Sbjct: 3 LREFSSV-----KVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIA 57
Query: 73 HGMLVASM 80
HGML +
Sbjct: 58 HGMLTMGL 65
>gnl|CDD|239537 cd03453, SAV4209_like, SAV4209_like
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Score = 52.3 bits (126), Expect = 6e-10
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 27 TGDIL-RQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM 80
GD L T S D+V Y+ S D NP+H++ + A+ G + HGML +
Sbjct: 1 VGDELPPLTPPVSRADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGL 55
Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Length = 127
>gnl|CDD|216580 pfam01575, MaoC_dehydratas, MaoC like domain
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Score = 51.6 bits (124), Expect = 1e-09
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 32 RQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGM--------LVASMFPQ 83
R+ + D+ ++ VS D NP+H + E A+ AGF + HGM LV
Sbjct: 13 RKPVTVTPADIALFALVSGDHNPIHVDPEFAKLAGFGGPIAHGMLTLAIARGLVEEQGGD 72
Query: 84 IISSHFVSPTVSF 96
+ + + +V F
Sbjct: 73 NVVARYGGWSVRF 85
The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydrogenase-epimerase, fatty acid synthase beta subunit. Several bacterial proteins that are composed solely of this domain have (R)-specific enoyl-CoA hydratase activity. This domain is also present in the NodN nodulation protein N. Length = 123
>gnl|CDD|224941 COG2030, MaoC, Acyl dehydratase [Lipid metabolism]
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Score = 49.8 bits (119), Expect = 9e-09
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 30 ILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSH 88
R + D+V ++ V+ D NP+H + E+A+ +GF + HGML ++ ++ +
Sbjct: 27 PHSPWRTVTEADIVLFAAVTGDPNPIHLDPEAAKKTSGFGGPIAHGMLTLALAMGLVVAA 86
Query: 89 FVSPTVSFS 97
P+V +
Sbjct: 87 LGDPSVGAN 95
>gnl|CDD|239530 cd03446, MaoC_like, MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain
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Score = 46.9 bits (112), Expect = 8e-08
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 41 DVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM 80
DVV ++ +S D NP+H ++E A+ F +R+ HG+L S+
Sbjct: 22 DVVMFAGLSGDWNPIHTDAEYAKKTRFGERIAHGLLTLSI 61
This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Length = 140
>gnl|CDD|236180 PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
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Score = 48.0 bits (115), Expect = 1e-07
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMF 81
+ GD R + +D+ ++ +S D NP H ++ A + GF + HGM ++
Sbjct: 14 IAIGDSASLVRTLTPDDIELFAAMSGDVNPAHLDAAYAASDGFHHVVAHGMWGGALI 70
>gnl|CDD|239536 cd03452, MaoC_C, MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein
Back Show alignment and domain information
Score = 41.6 bits (98), Expect = 9e-06
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 16 YFSSLEPRILKTGD-ILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHG 74
L P GD +L R + D+V ++ ++ D H + +A+ + F R+ HG
Sbjct: 1 NLEQLRP-----GDSLLTHRRTVTEADIVNFACLTGDHFYAHMDEIAAKASFFGKRVAHG 55
Query: 75 MLVASMFPQIISSHFVSP 92
V S + FV P
Sbjct: 56 YFVLSA----AAGLFVDP 69
Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family. Length = 142
>gnl|CDD|239531 cd03447, FAS_MaoC, FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit
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Score = 39.6 bits (93), Expect = 4e-05
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 45 YSKVSHDSNPLHFNSESARNAGFDDRLVHGM 75
Y++VS D NP+H + A AG + HGM
Sbjct: 18 YARVSGDFNPIHVSRVFASYAGLPGTITHGM 48
Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD). Length = 126
>gnl|CDD|239535 cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
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Score = 38.7 bits (91), Expect = 9e-05
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 41 DVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASM 80
D V ++ ++ ++ PLHF++ A F RLV+ + S+
Sbjct: 25 DNVLFTLLTMNTAPLHFDAAYAAKTEFGRRLVNSLFTLSL 64
FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown. Length = 146
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
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Score = 38.7 bits (91), Expect = 2e-04
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 12 PLLRYFSSLEPRILKTGD-ILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDR 70
P +YF L GD +L R + D+V ++ +S D+ H + +A F R
Sbjct: 532 PFRKYFEELRI-----GDSLLTARRTVTEADIVNFACLSGDTFYAHMDEIAAAANFFGGR 586
Query: 71 LVHGMLVASMFPQIISSHFVSP 92
+ HG V S + FV P
Sbjct: 587 VAHGYFVLSA----AAGLFVDP 604
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN
Back Show alignment and domain information
Score = 38.3 bits (89), Expect = 3e-04
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 12 PLLRYFSSLEPRILKTGD-ILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDR 70
P + + LE GD + R + D+ ++ +S D H + +AR + F R
Sbjct: 520 PFRKPYEDLEI-----GDSLTTHRRTVTEADIALFAALSGDHFYAHMDEIAARESFFGKR 574
Query: 71 LVHGMLVAS 79
+ HG V S
Sbjct: 575 VAHGYFVLS 583
This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardized in. This enzyme is related to aldehyde dehydrogenases and has domains which are members of the pfam00171 and pfam01575 families. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species. Length = 663
>gnl|CDD|239539 cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit
Back Show alignment and domain information
Score = 35.8 bits (83), Expect = 0.001
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 41 DVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVA 78
+ YS + D + +H + + AR G+ D V+G +A
Sbjct: 15 LLFRYSAATRDFHRIHHDRDYARAVGYPDLYVNGPTLA 52
The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension. Length = 123
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
113
PRK13693 142
(3R)-hydroxyacyl-ACP dehydratase subunit HadB; Pro
99.93 cd03452 142
MaoC_C MaoC_C The C-terminal hot dog fold of the M
99.92 cd03453 127
SAV4209_like SAV4209_like. Similar in sequence to
99.89 cd03446 140
MaoC_like MoaC_like Similar to the MaoC (monoamine
99.89 PF01575 122
MaoC_dehydratas: MaoC like domain; InterPro: IPR00
99.88 cd03451 146
FkbR2 FkbR2 is a Streptomyces hygroscopicus protei
99.88 cd03449 128
R_hydratase (R)-hydratase [(R)-specific enoyl-CoA
99.88 COG2030 159
MaoC Acyl dehydratase [Lipid metabolism]
99.88 PRK08190 466
bifunctional enoyl-CoA hydratase/phosphate acetylt
99.87 cd03455 123
SAV4209 SAV4209 is a Streptomyces avermitilis prot
99.87 cd03454 140
YdeM YdeM is a Bacillus subtilis protein that belo
99.85 cd03447 126
FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of t
99.85 cd03450 149
NodN NodN (nodulation factor N) contains a single
99.84 TIGR02278 663
PaaN-DH phenylacetic acid degradation protein paaN
99.82 PRK11563 675
bifunctional aldehyde dehydrogenase/enoyl-CoA hydr
99.81 KOG1206 272
consensus Peroxisomal multifunctional beta-oxidati
99.78 cd03441 127
R_hydratase_like (R)-hydratase [(R)-specific enoyl
99.78 PLN02864 310
enoyl-CoA hydratase
99.76 cd03448 122
HDE_HSD HDE_HSD The R-hydratase-like hot dog fold
99.76 PRK13691 166
(3R)-hydroxyacyl-ACP dehydratase subunit HadC; Pro
99.71 PRK13692 159
(3R)-hydroxyacyl-ACP dehydratase subunit HadA; Pro
99.7 PF13452 132
MaoC_dehydrat_N: N-terminal half of MaoC dehydrata
99.11 COG3777 273
Uncharacterized conserved protein [Function unknow
98.49 PLN02864 310
enoyl-CoA hydratase
96.93 PF12119 218
DUF3581: Protein of unknown function (DUF3581); In
95.22 PRK04424 185
fatty acid biosynthesis transcriptional regulator;
94.97 PRK00006 147
fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Review
93.35 cd01288 131
FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier
93.03 PRK13188 464
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetyl
89.82 TIGR02286 114
PaaD phenylacetic acid degradation protein PaaD. S
80.02
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
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Probab=99.93 E-value=2.7e-26 Score=158.93 Aligned_cols=88 Identities=30% Similarity=0.429 Sum_probs=79.8
Q ss_pred CCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCC--ceeE
Q 033683 20 LEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSP--TVSF 96 (113)
Q Consensus 20 ~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~--~~~~ 96 (113)
++|||++|||+++. ++++|++|+.+|+.+|||+||+|+|++||+++||+++|+||+++++++.+++.++.+++ ...+
T Consensus 4 ~~~ed~~vG~~~~~~~~tvt~~di~~FA~~sgD~nPiH~D~~~A~~~g~~~~iahG~~~~a~~~~~~~~~~~~~~~~~~~ 83 (142)
T PRK13693 4 REFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGLGGGYVTSWVGDPGAVTEY 83 (142)
T ss_pred ccHhHcCCCCCcCccceeeCHHHHHHHHHHhCCCCccccCHHHHHhcCCCCcEecHHHHHHHHHHHHHHhcCCCcceEEE
Confidence 34666999999975 79999999999999999999999999999999999999999999999999998887654 3567
Q ss_pred EEEecccchhH
Q 033683 97 SFFSSFPCVVL 107 (113)
Q Consensus 97 ~~rF~~PV~v~ 107 (113)
++||++||++|
T Consensus 84 ~~rF~~pv~~g 94 (142)
T PRK13693 84 NVRFTAVVPVP 94 (142)
T ss_pred EEEecccEECC
Confidence 99999999985
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein
Back Show alignment and domain information
Probab=99.92 E-value=3.2e-25 Score=152.96 Aligned_cols=89 Identities=20% Similarity=0.266 Sum_probs=79.3
Q ss_pred CCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCc-eeE--
Q 033683 21 EPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPT-VSF-- 96 (113)
Q Consensus 21 ~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~-~~~-- 96 (113)
+|||++|||+++. ++++|++|+..|+.++||+||+|+|++||++++|+++||||+++++++.+++.++.++.. ..+
T Consensus 1 ~~ed~~vG~~~~~~~~tvt~~~i~~Fa~~tgD~nPiH~D~e~A~~~~fg~~ia~G~l~~s~~~~l~~~~~~~~~~~~~g~ 80 (142)
T cd03452 1 NLEQLRPGDSLLTHRRTVTEADIVNFACLTGDHFYAHMDEIAAKASFFGKRVAHGYFVLSAAAGLFVDPAPGPVLANYGL 80 (142)
T ss_pred CccccCCCCEEeeCCEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeeecHHHHHHHHhhhCccCCcccEEEEecc
Confidence 4788999999975 899999999999999999999999999999999999999999999999998876666543 222
Q ss_pred -EEEecccchhHHH
Q 033683 97 -SFFSSFPCVVLWL 109 (113)
Q Consensus 97 -~~rF~~PV~v~~~ 109 (113)
++||++||++|--
T Consensus 81 ~~~rf~~PV~~GDt 94 (142)
T cd03452 81 ENLRFLEPVYPGDT 94 (142)
T ss_pred ceEEECCCCCCCCE
Confidence 7999999999853
Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
>cd03453 SAV4209_like SAV4209_like
Back Show alignment and domain information
Probab=99.89 E-value=2.2e-23 Score=140.98 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=75.6
Q ss_pred CCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC--CceeEEEEeccc
Q 033683 27 TGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS--PTVSFSFFSSFP 103 (113)
Q Consensus 27 VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg--~~~~~~~rF~~P 103 (113)
|||++++ ++++|++|+.+|++++||+||+|+|++||+++||+++++||+++.+++.+++.+++++ ...++++||++|
T Consensus 1 vG~~~~~~~~~vt~~~i~~fa~~sgD~npiH~D~~~A~~~g~~~~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~rf~~P 80 (127)
T cd03453 1 VGDELPPLTPPVSRADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGLLGRLVTDWVGDPGRVVSFGVRFTKP 80 (127)
T ss_pred CCccCCceeeecCHHHHHHHHHhhcCCCccccCHHHHHHcCCCCcEecHHHHHHHHHHHHHHHcCCccceEEEEEEECCc
Confidence 7999987 7999999999999999999999999999999999999999999999999999988753 346778999999
Q ss_pred chhHH
Q 033683 104 CVVLW 108 (113)
Q Consensus 104 V~v~~ 108 (113)
|++|-
T Consensus 81 v~~Gd 85 (127)
T cd03453 81 VPVPD 85 (127)
T ss_pred CcCCC
Confidence 99984
Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain
Back Show alignment and domain information
Probab=99.89 E-value=4.9e-23 Score=140.32 Aligned_cols=90 Identities=22% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcC--CCc-eeE
Q 033683 21 EPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFV--SPT-VSF 96 (113)
Q Consensus 21 ~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lp--g~~-~~~ 96 (113)
+|||++|||+++. ++++|++++..|+.++||+||+|+|++||++++|+++++||+++++++.+++..... +.. ..+
T Consensus 1 ~~ed~~vG~~~~~~~~tvt~~~i~~fa~~~gD~np~H~D~~~A~~~~~~~~ia~G~~~~a~~~~~~~~~~~~~~~~~~~~ 80 (140)
T cd03446 1 YFEDFEIGQVFESVGRTVTEADVVMFAGLSGDWNPIHTDAEYAKKTRFGERIAHGLLTLSIATGLLQRLGVFERTVVAFY 80 (140)
T ss_pred CcccccCCCEeccCCEEECHHHHHHHHHhhCCCcccccCHHHHccCCCCCceeccccHHHHHhhHhhhcccccceeeEEe
Confidence 4788999999975 799999999999999999999999999999999999999999999999988765322 111 122
Q ss_pred ---EEEecccchhHHHh
Q 033683 97 ---SFFSSFPCVVLWLL 110 (113)
Q Consensus 97 ---~~rF~~PV~v~~~~ 110 (113)
++||.+||++|--|
T Consensus 81 g~~~~~f~~pv~~GD~l 97 (140)
T cd03446 81 GIDNLRFLNPVFIGDTI 97 (140)
T ss_pred ccceEEEcCCCCCCCEE
Confidence 79999999998643
This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes
Back Show alignment and domain information
Probab=99.88 E-value=3.1e-23 Score=139.46 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=69.0
Q ss_pred CCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCC----ceeEEEE
Q 033683 26 KTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSP----TVSFSFF 99 (113)
Q Consensus 26 ~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~----~~~~~~r 99 (113)
.+|+...+ ++++|++++.+|+.+|||+||||+|++||+++||+++||||+++++++.+++.+++++. ...+++|
T Consensus 5 ~~g~~~~~~~~~tit~~~~~~fa~~sgD~nPiH~D~~~A~~~gf~~~ivhG~~~~a~~~~~~~~~~~~~~~~~~~~~~~r 84 (122)
T PF01575_consen 5 RIGQGIRHSRSRTITEADIRQFAALSGDFNPIHVDPEYARATGFGGPIVHGMLTLALASGLLGDWLGPNPPARLGRFNVR 84 (122)
T ss_dssp CTTSEEEEEEEEEEEHHHHHHHHHHHT---HHHH-HHHHHTSTTSSSB-BHHHHHHHHHHHHHHHHSTTECEEEEEEEEE
T ss_pred CCCCccccccCEEECHHHHHHHHHhhCCCCcceecHHHHhhcCCCCEEEccHHHHHHHHHHHHHhccCccceEEEEEEEE
Confidence 48998886 79999999999999999999999999999999999999999999999999999988763 3456899
Q ss_pred ecccchhHH
Q 033683 100 SSFPCVVLW 108 (113)
Q Consensus 100 F~~PV~v~~ 108 (113)
|.+||++|-
T Consensus 85 F~~PV~~gd 93 (122)
T PF01575_consen 85 FRAPVFPGD 93 (122)
T ss_dssp ESS--BTTE
T ss_pred EeccccCCC
Confidence 999999985
All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
Back Show alignment and domain information
Probab=99.88 E-value=7.5e-23 Score=140.30 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC-Cce--
Q 033683 20 LEPRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-PTV-- 94 (113)
Q Consensus 20 ~~~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-~~~-- 94 (113)
+.|||++||+++++ .+++|++++..|+.++||+||+|+|++||++++++++++||+++.+++.++..++.++ .+.
T Consensus 2 ~~~~~~~vG~~~~~~~~~tvt~~~i~~fa~~~gd~~piH~D~~~a~~~~~~~~ia~G~l~~~~~~~~~~~~~~~~~~~~~ 81 (146)
T cd03451 2 LYFEDFTVGQVFEHAPGRTVTEADNVLFTLLTMNTAPLHFDAAYAAKTEFGRRLVNSLFTLSLALGLSVNDTSLTAVANL 81 (146)
T ss_pred CccccCCCccEEecCCCeEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCccccHHhHHHHHhhheehhccccceecc
Confidence 46888999999985 6899999999999999999999999999999999999999999999998876665543 222
Q ss_pred e-EEEEecccchhHHH
Q 033683 95 S-FSFFSSFPCVVLWL 109 (113)
Q Consensus 95 ~-~~~rF~~PV~v~~~ 109 (113)
. .+++|++||++|--
T Consensus 82 ~~~~~~f~~pv~~GDt 97 (146)
T cd03451 82 GYDEVRFPAPVFHGDT 97 (146)
T ss_pred CccEEEecCCCCCCCE
Confidence 2 27999999999853
FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway
Back Show alignment and domain information
Probab=99.88 E-value=3.2e-22 Score=133.64 Aligned_cols=84 Identities=33% Similarity=0.496 Sum_probs=76.5
Q ss_pred CCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCce---eEEEEec
Q 033683 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTV---SFSFFSS 101 (113)
Q Consensus 25 ~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~---~~~~rF~ 101 (113)
++||++++.++++|++++.+|++++||.||+|+|++||+++||+++++||+++.+++.+++..+.++++. ..++||.
T Consensus 1 ~~~G~~~~~~~tv~~~~~~~fa~~~gd~npiH~D~~~A~~~g~~~~i~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~ 80 (128)
T cd03449 1 LKVGDSASLTRTITEEDVELFAELSGDFNPIHLDEEYAKKTRFGGRIAHGMLTASLISAVLGTLLPGPGTIYLSQSLRFL 80 (128)
T ss_pred CCCCCEEEEEEEEcHHHHHHHHHHhCCCCCccCCHHHHhhCCCCCceecHHHHHHHHHHHHhccCCCceEEEEEEEEEEC
Confidence 5799999778999999999999999999999999999999999999999999999999998887766543 3589999
Q ss_pred ccchhHH
Q 033683 102 FPCVVLW 108 (113)
Q Consensus 102 ~PV~v~~ 108 (113)
+||++|-
T Consensus 81 ~Pv~~gd 87 (128)
T cd03449 81 RPVFIGD 87 (128)
T ss_pred CCccCCC
Confidence 9999984
(R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Back Show alignment and domain information
Probab=99.88 E-value=1.6e-22 Score=142.33 Aligned_cols=90 Identities=22% Similarity=0.371 Sum_probs=79.7
Q ss_pred CCCCccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHh-cCCCCceeChHHHHHHHHHHhhhhcCCC--c
Q 033683 19 SLEPRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSHFVSP--T 93 (113)
Q Consensus 19 ~~~~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~-~g~~~~iv~G~l~~al~~~~l~~~lpg~--~ 93 (113)
...++++++|+.++. .+++|++|+..|+.++||+||||.|+++|++ ++|+++|+||||+.|++.+++.++.+.+ +
T Consensus 14 ~~~~~~~~vG~~~~~~~~~~~t~~d~~~fa~~tgD~qpiH~D~e~A~~~~~fg~~iahG~~t~a~~~~~~~~~~~~~~~~ 93 (159)
T COG2030 14 GLYFEDFEVGQVFPHSPWRTVTEADIVLFAAVTGDPNPIHLDPEAAKKTSGFGGPIAHGMLTLALAMGLVVAALGDPSVG 93 (159)
T ss_pred ccchhhccCCcEEecCCceEecHHHHHHHHHhcCCCCceecCHHHHhccCCCCCEehhHHHHHHHHHHHHHHhccCccee
Confidence 367888999998887 4799999999999999999999999999999 5999999999999999999998876543 3
Q ss_pred ee---EEEEecccchhHH
Q 033683 94 VS---FSFFSSFPCVVLW 108 (113)
Q Consensus 94 ~~---~~~rF~~PV~v~~ 108 (113)
.+ .++||.+||++|-
T Consensus 94 ~~~g~~~vRF~~PV~~Gd 111 (159)
T COG2030 94 ANLGGDEVRFVKPVFPGD 111 (159)
T ss_pred eeccccceEecCCCCCCC
Confidence 34 3799999999984
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Back Show alignment and domain information
Probab=99.87 E-value=2.9e-22 Score=161.11 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=84.2
Q ss_pred cCCCCCccCCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCce--
Q 033683 17 FSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTV-- 94 (113)
Q Consensus 17 ~~~~~~ed~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~-- 94 (113)
.++++|||++|||+++.++++|++++..|+.++||+||+|+|++||+++||+++|+||+++.+++.+++.+++++.+.
T Consensus 6 ~~~~~fedl~vG~~~~~~rtvT~~di~~FA~lsGD~nPiH~D~e~Ak~sgfg~~IahG~l~~s~~~~l~~~~~~g~~~~~ 85 (466)
T PRK08190 6 IENRTFDEIAIGDSASLVRTLTPDDIELFAAMSGDVNPAHLDAAYAASDGFHHVVAHGMWGGALISAVLGTRLPGPGTIY 85 (466)
T ss_pred hcCccHhhcCCCCEEeeeEEecHHHHHHHHHHhCCCCCCCcCHHHHHhCCCCCceeCHHHHHHHHHHHHhhhCCCcceEE
Confidence 456788999999999888999999999999999999999999999999999999999999999999998888876543
Q ss_pred -eEEEEecccchhHHH
Q 033683 95 -SFSFFSSFPCVVLWL 109 (113)
Q Consensus 95 -~~~~rF~~PV~v~~~ 109 (113)
..++||.+||++|--
T Consensus 86 ~~~~~rF~~PV~~GDt 101 (466)
T PRK08190 86 LGQSLRFRRPVRIGDT 101 (466)
T ss_pred EEEEEEEeCCcCCCCE
Confidence 358999999999853
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit
Back Show alignment and domain information
Probab=99.87 E-value=4e-22 Score=133.96 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=74.0
Q ss_pred CcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC--CceeEEEEecccc
Q 033683 28 GDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS--PTVSFSFFSSFPC 104 (113)
Q Consensus 28 G~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg--~~~~~~~rF~~PV 104 (113)
|+.++. ++++|++++.+|+.+++|+||+|+|++||+++||+++|+||+++++++.+++.++++. ....+++||.+||
T Consensus 1 g~~~~~~~~~vt~~~i~~fa~~s~D~~piH~D~~~A~~~g~~~~ia~G~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~pv 80 (123)
T cd03455 1 GDELPRLSIPPDPTLLFRYSAATRDFHRIHHDRDYARAVGYPDLYVNGPTLAGLVIRYVTDWAGPDARVKSFAFRLGAPL 80 (123)
T ss_pred CCcCCcEEecCCHHHHHHHHhhcCCCCcccCCHHHHHhcCCCceEEEHHHHHHHHHHHHHHccCCcceEEEEEEEeeccc
Confidence 677876 7899999999999999999999999999999999999999999999999999888753 3456789999999
Q ss_pred hhHHH
Q 033683 105 VVLWL 109 (113)
Q Consensus 105 ~v~~~ 109 (113)
++|--
T Consensus 81 ~~Gdt 85 (123)
T cd03455 81 YAGDT 85 (123)
T ss_pred cCCCE
Confidence 99853
The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function
Back Show alignment and domain information
Probab=99.85 E-value=3.8e-21 Score=131.38 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=74.9
Q ss_pred CccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhc-CC--Cce--e
Q 033683 22 PRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF-VS--PTV--S 95 (113)
Q Consensus 22 ~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~l-pg--~~~--~ 95 (113)
|||++||++++. .+++|++++..|+.+ +|+||+|+|++||++++|+++||||+++++++.++..+.. .. ... .
T Consensus 1 ~ed~~vG~~~~~~~~~vt~~~v~~Fa~~-~D~npih~D~e~A~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (140)
T cd03454 1 FEDLVIGQRFTSGSYTVTEEEIIAFARE-FDPQPFHLDEEAAKESLFGGLAASGWHTAAITMRLLVDAGLSGSASGGSPG 79 (140)
T ss_pred CCcCCCccEEEeCCEEEcHHHHHHHHHc-cCCCccCcCHHHHhcCCCCCeeechHHHHHHHHHhhhhhccccceEEEEcc
Confidence 688999999998 799999999999997 9999999999999999999999999999999998876432 22 112 2
Q ss_pred -EEEEecccchhHHH
Q 033683 96 -FSFFSSFPCVVLWL 109 (113)
Q Consensus 96 -~~~rF~~PV~v~~~ 109 (113)
.+++|.+||++|--
T Consensus 80 ~~~~~f~~pv~~Gd~ 94 (140)
T cd03454 80 IDELRWPRPVRPGDT 94 (140)
T ss_pred eeeeEeCCCCCCCCE
Confidence 37999999999853
YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit
Back Show alignment and domain information
Probab=99.85 E-value=3e-21 Score=131.18 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=67.6
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC-C---ceeEEEEecccchhHH
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-P---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-~---~~~~~~rF~~PV~v~~ 108 (113)
....|++|+..|+.+|||+||||+|++|||++||+++||||||+++++.+++.+++++ . ...+++||++||++|-
T Consensus 7 ~~~~t~~d~~~fa~lsGD~nPiH~D~~~A~~~g~~~~iahG~l~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~PV~~gd 85 (126)
T cd03447 7 LTITAPASNEPYARVSGDFNPIHVSRVFASYAGLPGTITHGMYTSAAVRALVETWAADNDRSRVRSFTASFVGMVLPND 85 (126)
T ss_pred EEEEChHHHHHHHHHhCCCCccCCCHHHHHHcCCCCCeechhHHHHHHHHHHHHhccCCCcceEEEEEEEEcccCcCCC
Confidence 4678999999999999999999999999999999999999999999999998887652 2 3457899999999985
Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit
Back Show alignment and domain information
Probab=99.84 E-value=6.1e-21 Score=133.22 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=73.7
Q ss_pred CCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcC--CCc--eeE---
Q 033683 26 KTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFV--SPT--VSF--- 96 (113)
Q Consensus 26 ~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lp--g~~--~~~--- 96 (113)
-||++++. .+++|++|+..|+.++||.||+|.|++|||++||+++||||+++++++.+++.++++ +.. ..+
T Consensus 11 ~vG~~~~~~~~~~vt~~di~~FA~~sgD~nPiH~D~e~A~~~gfg~~Ia~G~~t~sl~~~l~~~~~~~~~~~~~~~~g~~ 90 (149)
T cd03450 11 LVGQELGVSDWVTVDQERIDQFADATGDHQWIHVDPERAAAEPFGGTIAHGFLTLSLLPALTPQLFRVEGVKMGVNYGLD 90 (149)
T ss_pred hCCCCcCCCCCEEECHHHHHHHHHhhCCCCccccCHHHHhhCCCCCeEECHHHHHHHHHHHHHhcccCCCceEEEEeecc
Confidence 48999875 479999999999999999999999999999999999999999999999999888754 332 233
Q ss_pred EEEecccchhHHH
Q 033683 97 SFFSSFPCVVLWL 109 (113)
Q Consensus 97 ~~rF~~PV~v~~~ 109 (113)
++||.+||++|--
T Consensus 91 ~~rF~~PV~~GDt 103 (149)
T cd03450 91 KVRFPAPVPVGSR 103 (149)
T ss_pred EEEeCcceeCCcE
Confidence 6999999999853
Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN
Back Show alignment and domain information
Probab=99.82 E-value=1.7e-20 Score=156.20 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCccccCCCCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcC
Q 033683 12 PLLRYFSSLEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFV 90 (113)
Q Consensus 12 ~~~~~~~~~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lp 90 (113)
-+.|-.-+++|||++|||+++. ++++|++|+..|+.+|||+||+|+|++||++++|+++|+||+++++++.+++.++.+
T Consensus 515 ~~~~~~~~~~~ed~~VG~~~~~~~~tvt~~dI~~FA~~sgD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~~~~~~ 594 (663)
T TIGR02278 515 GAEVHPFRKPYEDLEIGDSLTTHRRTVTEADIALFAALSGDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLFVDPAP 594 (663)
T ss_pred cCCcCCCCCCHHHcCCCCCcCCCCeEEcHHHHHHHHHhhCCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHhhccCc
Confidence 3445434789999999999975 799999999999999999999999999999999999999999999999999876655
Q ss_pred CCc-ee---EEEEecccchhHHH
Q 033683 91 SPT-VS---FSFFSSFPCVVLWL 109 (113)
Q Consensus 91 g~~-~~---~~~rF~~PV~v~~~ 109 (113)
+.. .. .++||.+||++|--
T Consensus 595 ~~~~~~~g~~~~rF~~PV~~GDt 617 (663)
T TIGR02278 595 GPVLANYGLENLRFLEPVGPGDT 617 (663)
T ss_pred cchhhhcccceEEEcCCCCCCCE
Confidence 543 22 37999999999853
This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Back Show alignment and domain information
Probab=99.81 E-value=5.6e-20 Score=153.29 Aligned_cols=91 Identities=21% Similarity=0.189 Sum_probs=80.7
Q ss_pred CCCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCc-ee-
Q 033683 19 SLEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPT-VS- 95 (113)
Q Consensus 19 ~~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~-~~- 95 (113)
+++|||++|||+++. ++++|++|+..|+.++||+||+|+|++||++++|+++|+||+++++++.+++.++.++.. ..
T Consensus 534 ~~~fed~~vG~~~~~~~~tvt~~di~~FA~lsgD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~~~~~~~~~~~~~ 613 (675)
T PRK11563 534 RKYFEELRIGDSLLTARRTVTEADIVNFACLSGDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLFVDPAPGPVLANY 613 (675)
T ss_pred CCCHHHcCCCCEeccCCEEEcHHHHHHHHHhhCCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHhhccCccchhhhc
Confidence 578999999999975 799999999999999999999999999999999999999999999999998876655542 22
Q ss_pred --EEEEecccchhHHH
Q 033683 96 --FSFFSSFPCVVLWL 109 (113)
Q Consensus 96 --~~~rF~~PV~v~~~ 109 (113)
.++||.+||++|--
T Consensus 614 g~~~~rF~~PV~~GDt 629 (675)
T PRK11563 614 GLENLRFLTPVKPGDT 629 (675)
T ss_pred ccceEEEcCCCCCCCE
Confidence 27999999999843
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.78 E-value=2.6e-19 Score=132.15 Aligned_cols=79 Identities=30% Similarity=0.424 Sum_probs=72.6
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCc-eeEEEEecccchhHHHhhh
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPT-VSFSFFSSFPCVVLWLLLI 112 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~-~~~~~rF~~PV~v~~~~~~ 112 (113)
.+..|.+|+++|+++|||+||+|+|||.|+.+||+.+|+||+|+.++..+.+..+.|+.. ...++||+.||++|.-|+.
T Consensus 156 v~~~ts~DqaAlyrlsgD~NPLHiDPe~A~~agFetpilHGlc~lg~~~riv~a~~~~a~y~~~kvrF~spV~pGdtll~ 235 (272)
T KOG1206|consen 156 VERFTSEDQAALYRLSGDHNPLHIDPESALEAGFETPILHGLCTLGFSARIVGAQFPPAVYKAQKVRFSSPVGPGDTLLV 235 (272)
T ss_pred eeecchhhHHHHHHhcCCCCccccCHHHHHhcCCCCchhhhHHHhhhhHHHHHHhcCchhhheeeeeecCCCCCchhHHH
Confidence 678999999999999999999999999999999999999999999999999998887543 4678999999999987763
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]
Back Show alignment and domain information
Probab=99.78 E-value=1e-18 Score=116.11 Aligned_cols=75 Identities=28% Similarity=0.396 Sum_probs=68.4
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC-Cc---eeEEEEecccchhHH
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-PT---VSFSFFSSFPCVVLW 108 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-~~---~~~~~rF~~PV~v~~ 108 (113)
.++++++++..|+.++||.||+|+|++||++.|++++++||+++++++.+++.+++++ .. ...++||.+||++|-
T Consensus 7 ~~~~~~~~~~~fa~~~gd~npiH~d~~~A~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Pv~~Gd 85 (127)
T cd03441 7 GRTVTEADIALFARLSGDPNPIHVDPEYAKAAGFGGRIAHGMLTLSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGD 85 (127)
T ss_pred ceEcCHHHHHHHHHHhCCCCccccCHHHHHhCCCCCceechHHHHHHHHhhhhhhccCcccceeEEeEEEEeCCcCCCC
Confidence 7899999999999999999999999999999999999999999999999999888764 22 346899999999984
Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
>PLN02864 enoyl-CoA hydratase
Back Show alignment and domain information
Probab=99.76 E-value=1.2e-18 Score=134.01 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=74.7
Q ss_pred CccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhh-cCCC---cee
Q 033683 22 PRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSH-FVSP---TVS 95 (113)
Q Consensus 22 ~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~-lpg~---~~~ 95 (113)
+++..+|++.+. ....|..++++|+++|||+||||+|++||+++||+++|+||||+++++.+.+.++ .++. ...
T Consensus 178 ~~~~~~p~~~pd~~~~~~t~~~~~~~a~lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~~~~~~~~~~~~~~ 257 (310)
T PLN02864 178 VSAVKIPKSQPDAVFEDQTQPSQALLYRLSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVIKCFCNGDPTAVKT 257 (310)
T ss_pred ccccCCCCCCCCeEEeeccChhHHHHHHhhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHHhhhcCCCCceEEE
Confidence 455778888774 3578999999999999999999999999999999999999999999998877654 3432 356
Q ss_pred EEEEecccchhHHHh
Q 033683 96 FSFFSSFPCVVLWLL 110 (113)
Q Consensus 96 ~~~rF~~PV~v~~~~ 110 (113)
+++||.+||++|--+
T Consensus 258 ~~~rF~~PV~pGdtl 272 (310)
T PLN02864 258 ISGRFLLHVYPGETL 272 (310)
T ss_pred EEEEEcCCccCCCEE
Confidence 789999999998543
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins
Back Show alignment and domain information
Probab=99.76 E-value=1.6e-18 Score=117.36 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=64.8
Q ss_pred eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhc-CCCc---eeEEEEecccchhHH
Q 033683 34 TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF-VSPT---VSFSFFSSFPCVVLW 108 (113)
Q Consensus 34 ~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~l-pg~~---~~~~~rF~~PV~v~~ 108 (113)
..++++++...|+. |||+||||+|++|||++||+++|+||+++++++.+++.+++ ++.+ ..+++||.+||++|-
T Consensus 10 ~~~~~~~~~~~~~~-SgD~nPiH~d~e~A~~~g~~~~iahG~~t~a~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~~gD 87 (122)
T cd03448 10 EIPTSPDQALLYRL-SGDYNPLHIDPAFAKAAGFPRPILHGLCTYGFAARAVLEAFADGDPARFKAIKVRFSSPVFPGE 87 (122)
T ss_pred EecCCcChHHHHHH-hCCCCccccCHHHHHHcCCCCceehhHHHHHHHHHHHHHHhcCCCcceeEEEEEEEcCCccCCC
Confidence 57889999999975 99999999999999999999999999999999999887765 3332 346899999999984
Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Back Show alignment and domain information
Probab=99.71 E-value=2.4e-17 Score=116.95 Aligned_cols=84 Identities=19% Similarity=0.297 Sum_probs=65.6
Q ss_pred CCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhh-c----CCC-c---
Q 033683 25 LKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSH-F----VSP-T--- 93 (113)
Q Consensus 25 ~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~-l----pg~-~--- 93 (113)
=.||+++++ .+++|++++..||.++||.||+|+|++|||+++|+++||||++. +++...+... . +|. .
T Consensus 6 ~~~g~~~~~~~~~~Vt~~~I~~FA~~~GD~nPlH~D~eyA~~s~fg~~IApgt~~-~~~~~~~~~~~~~~~~~g~~~~~~ 84 (166)
T PRK13691 6 DIRGMVWRYPDYFVVGREQIRQFARAVKCDHPAFFSEDAAAELGYDALVAPLTFV-TIFAKYVQLDFFRHVDVGMETMQI 84 (166)
T ss_pred hhCccCcCCCCCeEECHHHHHHHHHHHCCCCCcccCHHHHHhCCCCCcccCHHHH-HHHHHHhccccccccccCCCccee
Confidence 358999986 47999999999999999999999999999999999999999886 4444433321 1 111 1
Q ss_pred e--eEEEEecccchhHHH
Q 033683 94 V--SFSFFSSFPCVVLWL 109 (113)
Q Consensus 94 ~--~~~~rF~~PV~v~~~ 109 (113)
. ..+++|.+||++|--
T Consensus 85 v~~~q~~~f~rPV~~GDt 102 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDK 102 (166)
T ss_pred eeeeeEEEEeCCcCCCCE
Confidence 1 236889999999843
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Back Show alignment and domain information
Probab=99.70 E-value=3.1e-17 Score=115.58 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=67.1
Q ss_pred CccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhh--hh-------cC
Q 033683 22 PRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIIS--SH-------FV 90 (113)
Q Consensus 22 ~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~--~~-------lp 90 (113)
.++..||++++. .+++|++++..||.++||.||+|+|++|||+++|+++++|+.+..++ ++.. .+ ++
T Consensus 3 ~~~~~vG~~~~~~~~~tvt~~dI~~FA~~~GD~nPlh~D~e~A~~~~fg~~iA~~~~~~~~--gl~~~~~~~~~~~l~~~ 80 (159)
T PRK13692 3 LSADIVGMHYRYPDHYEVEREKIREYAVAVQNDDAAYFEEDAAAELGYKGLLAPLTFICVF--GYKAQSAFFKHANIAVA 80 (159)
T ss_pred CChhHceeEcCCCCceEeCHHHHHHHHHHHCCCCCCccCHHHHHhcCCCCcccChHHHHHh--hhhhhhhhhhcccCCCC
Confidence 345789999987 48999999999999999999999999999999999999998885432 2221 11 11
Q ss_pred CCc---eeEEEEecccchhHHH
Q 033683 91 SPT---VSFSFFSSFPCVVLWL 109 (113)
Q Consensus 91 g~~---~~~~~rF~~PV~v~~~ 109 (113)
++. ...+++|.+||++|--
T Consensus 81 ~~~~~~~~q~~~f~~PV~~GDt 102 (159)
T PRK13692 81 DAQIVQVDQVLKFEKPIVAGDK 102 (159)
T ss_pred ccceEeeeeEEEEeCCccCCCE
Confidence 111 2257999999999843
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A
Back Show alignment and domain information
Probab=99.11 E-value=3.5e-11 Score=81.17 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=56.5
Q ss_pred CCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHH--hhhhcCCC---c--eeEE
Q 033683 26 KTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI--ISSHFVSP---T--VSFS 97 (113)
Q Consensus 26 ~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~--l~~~lpg~---~--~~~~ 97 (113)
.||.++++ ..++|+++++.|+.+.||.||.|.|+++|++.++++.+|++.+...+.... +...++.. . ...+
T Consensus 2 ~iG~~~~~~~~~v~~~~i~~ya~avg~~~p~~~d~~~a~~~~~~~~~apPt~~~~~~~~~~~~~~~~~~~~~~~vh~~~~ 81 (132)
T PF13452_consen 2 WIGREFEPVTYTVTRRDIRRYALAVGDPNPLYLDEEYARAAGHGGLIAPPTFAVVLAWPAPAMFPDLGFDLTRLVHGEQD 81 (132)
T ss_dssp GTT-B-E-EEEEE-HHHHHHHHHHTT-CTTHHHHCTSS--TTSTT-B--GGGHHHHHHHCCGGCGCCSS-GGGEEEEEEE
T ss_pred CCccEeCCeeEEECHHHHHHHHHHhCcCCccccCHhHhhccCCCCcccCHHHHhhhhcccceeeecCCCChhhEEecCcE
Confidence 47998976 799999999999999999999999999999999999999999988776653 22223221 1 2457
Q ss_pred EEecccchhHH
Q 033683 98 FFSSFPCVVLW 108 (113)
Q Consensus 98 ~rF~~PV~v~~ 108 (113)
++|.+|+.+|-
T Consensus 82 ~~~h~Pl~~Gd 92 (132)
T PF13452_consen 82 IEFHRPLRPGD 92 (132)
T ss_dssp EEESS--BSSE
T ss_pred EEEeCCCCCCC
Confidence 99999999874
>COG3777 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=98.49 E-value=4.6e-08 Score=73.23 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=66.8
Q ss_pred EeeCHHHHHHHHhhcCCCCCCCCCHHHHHh-cCCCCceeChHHHHHHHHHHhhhhcCCCceeEEEEecccchhHHH
Q 033683 35 RIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSHFVSPTVSFSFFSSFPCVVLWL 109 (113)
Q Consensus 35 ~tit~~di~~fa~~sgD~nPiH~D~~~Ak~-~g~~~~iv~G~l~~al~~~~l~~~lpg~~~~~~~rF~~PV~v~~~ 109 (113)
.|.|+-++-+|++++-|-|.||+|..|++. .||++.||||.+.+.++.+.+....|.+...++.|-.+|.|++.-
T Consensus 166 ~tptpvllfrYsaltfN~HrIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~~pq~~~Rf~fR~L~p~f~~~~ 241 (273)
T COG3777 166 FTPTPVLLFRYSALTFNGHRIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPFLPQPIRRFRFRNLSPAFPNET 241 (273)
T ss_pred CCCCchheeehhhhccCceeeeccCcceeeccCCCCceecchHHHHHHHHHhhhhccccchheeccccccccCCCC
Confidence 466778888999999999999999999985 799999999999999999999887888888889999999988643
>PLN02864 enoyl-CoA hydratase
Back Show alignment and domain information
Probab=96.93 E-value=0.00072 Score=52.33 Aligned_cols=82 Identities=9% Similarity=-0.027 Sum_probs=61.5
Q ss_pred CCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHh----cCCCCceeChHHHHHHHHHHhhh---hcCCCc----
Q 033683 26 KTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARN----AGFDDRLVHGMLVASMFPQIISS---HFVSPT---- 93 (113)
Q Consensus 26 ~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~----~g~~~~iv~G~l~~al~~~~l~~---~lpg~~---- 93 (113)
.+|.+++. +..+|+.|++.||...|+.+|.+.|++.++. .|+++..|...+...+....... ..|+.+
T Consensus 13 ~~g~~~p~~~~~~~~~d~~lyAl~vG~~~~~~~d~~~l~~~ye~~g~~~~~a~PTf~~vl~~~~~~~~~~~~p~~~~d~~ 92 (310)
T PLN02864 13 VLAHKFPEVTYSYTERDVALYALGVGACGRDAVDEDELKYVYHRDGQQFIKVLPTFASLFNLGSLDGFGLDLPGLNYDPS 92 (310)
T ss_pred HhCCcCCCeeEEECHHHHHHHHHhcCCCCCCCCChHHhhhhhccccCCCcccCCceeeeccccCcccccccCCCCCCChh
Confidence 37899986 7899999999999999999999999988887 68888899888776654322111 123222
Q ss_pred --e--eEEEEecccchhH
Q 033683 94 --V--SFSFFSSFPCVVL 107 (113)
Q Consensus 94 --~--~~~~rF~~PV~v~ 107 (113)
+ ..++++.+|+.++
T Consensus 93 ~lVHgeq~i~~~rPlp~~ 110 (310)
T PLN02864 93 LLLHGQQYIEIYKPIPSS 110 (310)
T ss_pred heeeccceEEEECCCCCC
Confidence 2 2358888998875
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins
Back Show alignment and domain information
Probab=95.22 E-value=0.082 Score=39.07 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=42.9
Q ss_pred eEeeCHHHHHHHHhhc-CCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCceeEEEEecccchhH
Q 033683 34 TRIFSSEDVVEYSKVS-HDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTVSFSFFSSFPCVVL 107 (113)
Q Consensus 34 ~~tit~~di~~fa~~s-gD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~~~~~rF~~PV~v~ 107 (113)
...+|+++.-.||+-. ||+|||| |++. ++=.|||=+.+|++..-. |-...+..+|...|--+
T Consensus 13 ~v~is~~QAS~FAK~VAgDFNPIH-D~Da------KRFCVPGDLLFalvL~~~-----GlS~~M~f~F~GMVg~~ 75 (218)
T PF12119_consen 13 SVSISAEQASRFAKEVAGDFNPIH-DPDA------KRFCVPGDLLFALVLAKY-----GLSQKMRFRFSGMVGDD 75 (218)
T ss_pred EEEEcHHHHhHHHHHhccCCCccC-CCCC------ccccCccHHHHHHHHHhc-----CccceeEEEEeeeecCC
Confidence 5679999999999864 9999999 4442 456899999999876432 22234455665555433
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Back Show alignment and domain information
Probab=94.97 E-value=0.044 Score=39.35 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=42.3
Q ss_pred cCCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCce---eEEEEe
Q 033683 24 ILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTV---SFSFFS 100 (113)
Q Consensus 24 d~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~---~~~~rF 100 (113)
+++.|..+.....+|.++. |. +.+++||.++++.+.+++....++... .-+++|
T Consensus 79 eie~g~~a~~~k~Vt~ne~--fn---------------------~~~i~hG~f~~aqa~~la~~~~~~~~~~~~i~~irF 135 (185)
T PRK04424 79 DLELGRSAISILEITEEMV--FS---------------------KTGIARGHHLFAQANSLAVAVIDAELALTGVANIRF 135 (185)
T ss_pred EecCCcEEEEEEecChhhc--cC---------------------CCCeecHHHHHHHHHHHHHHhcCCcEEEEEeeeEEE
Confidence 4556766655677777663 11 357999999999988865432333322 137999
Q ss_pred cccchhHHHh
Q 033683 101 SFPCVVLWLL 110 (113)
Q Consensus 101 ~~PV~v~~~~ 110 (113)
.+||++|--|
T Consensus 136 ~kPV~pGD~L 145 (185)
T PRK04424 136 KRPVKLGERV 145 (185)
T ss_pred ccCCCCCCEE
Confidence 9999999543
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Back Show alignment and domain information
Probab=93.35 E-value=0.13 Score=34.95 Aligned_cols=49 Identities=10% Similarity=-0.115 Sum_probs=28.9
Q ss_pred HHHhcCCCCceeChHHH---HHHHHHHhhhh---cCCCce---e-EEEEecccchhHHH
Q 033683 61 SARNAGFDDRLVHGMLV---ASMFPQIISSH---FVSPTV---S-FSFFSSFPCVVLWL 109 (113)
Q Consensus 61 ~Ak~~g~~~~iv~G~l~---~al~~~~l~~~---lpg~~~---~-~~~rF~~PV~v~~~ 109 (113)
|.+....+.+++||.+. ++.+.+++... .++... . -+++|.+||++|--
T Consensus 49 ~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 49 FFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred cccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 44444557899999877 33333332211 122221 1 26999999999854
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway
Back Show alignment and domain information
Probab=93.03 E-value=0.16 Score=33.31 Aligned_cols=53 Identities=13% Similarity=-0.061 Sum_probs=31.9
Q ss_pred CHHHHHhcCCCCceeChHHHHHHHHHHhhh---hc----CCC-ce---eEEEEecccchhHHHh
Q 033683 58 NSESARNAGFDDRLVHGMLVASMFPQIISS---HF----VSP-TV---SFSFFSSFPCVVLWLL 110 (113)
Q Consensus 58 D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~---~l----pg~-~~---~~~~rF~~PV~v~~~~ 110 (113)
|..|.+....+.+++||.+..-.+...... .. .+. +. .-+++|.+||++|-.+
T Consensus 31 d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l 94 (131)
T cd01288 31 NEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQL 94 (131)
T ss_pred CChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEE
Confidence 344566666688999998884443333322 11 122 11 1369999999998654
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Back Show alignment and domain information
Probab=89.82 E-value=0.7 Score=37.96 Aligned_cols=57 Identities=11% Similarity=-0.073 Sum_probs=37.4
Q ss_pred CCCCCHHHHHhcCCCCceeChHHHH---HHHHHHhhh-hcC---CCcee---E-EEEecccchhHHHh
Q 033683 54 PLHFNSESARNAGFDDRLVHGMLVA---SMFPQIISS-HFV---SPTVS---F-SFFSSFPCVVLWLL 110 (113)
Q Consensus 54 PiH~D~~~Ak~~g~~~~iv~G~l~~---al~~~~l~~-~lp---g~~~~---~-~~rF~~PV~v~~~~ 110 (113)
-++.|..|++....+.+++||.+.. |-..+++.. ..+ +.... . +++|.+||++|--|
T Consensus 355 ~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL 422 (464)
T PRK13188 355 NVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTL 422 (464)
T ss_pred EcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEE
Confidence 3667888888888889999999887 433333321 111 21111 2 68999999998543
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD
Back Show alignment and domain information
Probab=80.02 E-value=3.4 Score=26.65 Aligned_cols=40 Identities=10% Similarity=-0.061 Sum_probs=28.0
Q ss_pred CceeChHHHHHHHHHHhhhhc--CCC---ceeEEEEecccchhHH
Q 033683 69 DRLVHGMLVASMFPQIISSHF--VSP---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 69 ~~iv~G~l~~al~~~~l~~~l--pg~---~~~~~~rF~~PV~v~~ 108 (113)
.-++||-..++++..+..-.. .+. ...++++|.+|+.+|-
T Consensus 30 ~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~ 74 (114)
T TIGR02286 30 HGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGE 74 (114)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCC
Confidence 358999999988877654222 222 2356899999999983
Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 113
d1iq6a_ 132
d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Ae
1e-11 d2b3na1 154
d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Ar
1e-10 d1q6wa_ 151
d.38.1.4 (A:) Monoamine oxidase regulatory protein
2e-07 d1s9ca1 126
d.38.1.4 (A:164-289) 2-enoyl-coa hydratase domain
4e-07 d2bi0a1 178
d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0
3e-06 d2c2ia1 149
d.38.1.4 (A:2-150) Hypothetical protein Rv0130 {My
6e-06 d1pn2a2 124
d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain
2e-05 d2bi0a2 152
d.38.1.4 (A:186-337) Hypothetical protein Rv0216/M
5e-04
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]} Length = 132
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: (R)-specific enoyl-CoA hydratase
species: Aeromonas caviae [TaxId: 648]
Score = 55.1 bits (132), Expect = 1e-11
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 25 LKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQI 84
L+ G R ++ F + +V ++ +S D NPLH + A F+ +VHGML+AS+F +
Sbjct: 4 LEVGQKARLSKRFGAAEVAAFAALSEDFNPLHLDPAFAATTAFERPIVHGMLLASLFSGL 63
Query: 85 ISSHF-VSPTVSFSFFSSFPCVVLW 108
+ ++ SF V
Sbjct: 64 LGQQLPGKGSIYLGQSLSFKLPVFV 88
>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 154
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein AF1124
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 53.2 bits (127), Expect = 1e-10
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 3 INNLLSTKP----PLLRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFN 58
+ + S K P ++ L+ G + DV + +S D NP+HF+
Sbjct: 10 MKGIYSKKGGKVKPFEKFEGELKE-----GYRFEYEKKLCEIDVAMFGLISGDLNPVHFD 64
Query: 59 SESARNAGFDDRLVHGMLVASMFPQIISSHF 89
+ A F R+VHGML S+ ++
Sbjct: 65 EDFASKTRFGGRVVHGMLTTSLVSAAVARLP 95
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 151
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Monoamine oxidase regulatory protein
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.8 bits (105), Expect = 2e-07
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 15 RYFSSLEPRILKTGDILR-QTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVH 73
YF S++ G+ + R + D+ ++ ++ D PLH + E A+ F +
Sbjct: 5 IYFESIQI-----GEKIEGLPRTVTETDIWTFAYLTADFFPLHTDVEFAKKTIFGKPIAQ 59
Query: 74 GMLVASMFPQIISSHFVSPT 93
GMLV S+ ++ +S
Sbjct: 60 GMLVLSIALGMVDQVILSNY 79
>d1s9ca1 d.38.1.4 (A:164-289) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Human (Homo sapiens) [TaxId: 9606]} Length = 126
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase
species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 4e-07
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 39 SEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTVSF-- 96
S + ++S D NPLH + A AGFD ++HG+ + + F VS
Sbjct: 18 SLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFK 77
Query: 97 SFFSSFPC 104
+ + F
Sbjct: 78 AVKARFAK 85
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 178
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein Rv0216/MT0226
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.6 bits (97), Expect = 3e-06
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 15 RYFSSLEPRILKTGDILRQT--RIFSSEDVVEYSKVSHDSNPLHFNSE-SARNAGFDDRL 71
YF L G + S + + + L +S+ A G L
Sbjct: 6 PYFDDLSK-----GQVFDWAPGVTLSLGLAAAHQSIVGNRLRLALDSDLCAAVTGMPGPL 60
Query: 72 VHGMLVASMFP 82
H LV +
Sbjct: 61 AHPGLVCDVAI 71
>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 149
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein Rv0130
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.5 bits (94), Expect = 6e-06
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 15 RYFSSLEPRILKTGDILRQTRIF--SSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLV 72
R F S+ G+ + Q+ + E+V ++ + D +H + E A F +
Sbjct: 1 RTFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIA 60
Query: 73 HGMLVASMFPQIISSHF 89
HG + ++ P++ +
Sbjct: 61 HGFMTLALLPRLQHQMY 77
>d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 124
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class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase
species: Yeast (Candida tropicalis) [TaxId: 5482]
Score = 38.5 bits (89), Expect = 2e-05
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 39 SEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF 89
SED+ ++S D NPLH + A+ A F ++HGM + + + F
Sbjct: 19 SEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKF 69
>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 152
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein Rv0216/MT0226
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 35.0 bits (80), Expect = 5e-04
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 15 RYFSSLEPRILKTGDILRQT-RIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVH 73
+F + G +L T + S E ++++ + H + + RLV+
Sbjct: 17 PHFDAGIA-----GAVLHSTADLVSGAP--ELARLTLNIAATHHDWRVSGR-----RLVY 64
Query: 74 GMLVASM 80
G +
Sbjct: 65 GGHTIGL 71
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 113
d2b3na1 154
Hypothetical protein AF1124 {Archaeon Archaeoglobu
99.93 d1iq6a_ 132
(R)-specific enoyl-CoA hydratase {Aeromonas caviae
99.92 d1q6wa_ 151
Monoamine oxidase regulatory protein {Archaeon Arc
99.87 d2c2ia1 149
Hypothetical protein Rv0130 {Mycobacterium tubercu
99.87 d1s9ca1 126
2-enoyl-coa hydratase domain of multifunctional pe
99.85 d1pn2a2 124
2-enoyl-coa hydratase domain of multifunctional pe
99.84 d2bi0a1 178
Hypothetical protein Rv0216/MT0226 {Mycobacterium
99.84 d2bi0a2 152
Hypothetical protein Rv0216/MT0226 {Mycobacterium
99.78 d2cwza1 138
Hypothetical protein TTHA0967 {Thermus thermophilu
98.28 d1s9ca2 154
2-enoyl-coa hydratase domain of multifunctional pe
98.14 d2f41a1 111
Transcription factor FapR, C-terminal domain {Baci
94.09 d1ixla_ 130
Hypothetical protein PH1136 {Archaeon Pyrococcus h
87.38
>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
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class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein AF1124
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=7.8e-27 Score=160.50 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=88.3
Q ss_pred cccccCCCCCccccCCCCCccCCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHH
Q 033683 4 NNLLSTKPPLLRYFSSLEPRILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQ 83 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ed~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~ 83 (113)
+++.|+++-...+++. .|||+++|++++.++++|++|+..||.+|||+||||+|++|||++||+++||||+++.+++.+
T Consensus 11 ~~~~~~~~~~~~p~~~-~~~el~iG~~~~~~rtiT~~di~~FA~~sgD~nPiH~D~e~Ak~~g~~~~IahG~l~~~~~~~ 89 (154)
T d2b3na1 11 KGIYSKKGGKVKPFEK-FEGELKEGYRFEYEKKLCEIDVAMFGLISGDLNPVHFDEDFASKTRFGGRVVHGMLTTSLVSA 89 (154)
T ss_dssp HHHHHHTTCCCCCCCC-CCSCCCTTCEEEEEEECCHHHHHHHHHHHCCCCHHHHCHHHHHHSTTSSCCCCHHHHHHHHHH
T ss_pred hchhcccCcccCcccc-cccccCCCCEEEEEEEEeHHHHHHHHHhhCCCCCCEeCHHHHhhcCccceehhHHHHHHHHHH
Confidence 3445555555555655 889999999998899999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCc--eeEEEEecccchhHH
Q 033683 84 IISSHFVSPT--VSFSFFSSFPCVVLW 108 (113)
Q Consensus 84 ~l~~~lpg~~--~~~~~rF~~PV~v~~ 108 (113)
++.++ ++.. ...++||.+||++|-
T Consensus 90 ~~~~~-~g~~~~~~~~~rF~~PV~~GD 115 (154)
T d2b3na1 90 AVARL-PGTVVLLEQSFRYTSPVRIGD 115 (154)
T ss_dssp HHHTS-SSCEEEEEEEEEECSCCCTTC
T ss_pred HHHhc-cchhhhhhhheEEecCcCCCC
Confidence 99864 5543 245899999999984
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: (R)-specific enoyl-CoA hydratase
species: Aeromonas caviae [TaxId: 648]
Probab=99.92 E-value=6.5e-26 Score=151.39 Aligned_cols=86 Identities=28% Similarity=0.481 Sum_probs=80.2
Q ss_pred ccCCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCce---eEEEE
Q 033683 23 RILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTV---SFSFF 99 (113)
Q Consensus 23 ed~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~---~~~~r 99 (113)
||++|||++..++++|++|+..|+++|||+||+|+|++||+++||+++|+||+++.+++.+++.+++++++. ..++|
T Consensus 2 e~l~vG~~~~~~~~it~~di~~fa~~sgD~nPiH~D~~~A~~~g~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r 81 (132)
T d1iq6a_ 2 QSLEVGQKARLSKRFGAAEVAAFAALSEDFNPLHLDPAFAATTAFERPIVHGMLLASLFSGLLGQQLPGKGSIYLGQSLS 81 (132)
T ss_dssp CSCCTTCEEEEEEECCHHHHHHHHHHHTCCCHHHHCHHHHTTSTTCSCBCCHHHHHHHHHHHHHHTSSCTTCEEEEEEEE
T ss_pred CCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCcEEcHHHHhhcCCCceeeehhhhhhHHhhcchhhcCCCcceeehhhce
Confidence 689999999889999999999999999999999999999999999999999999999999999999987653 34799
Q ss_pred ecccchhHH
Q 033683 100 SSFPCVVLW 108 (113)
Q Consensus 100 F~~PV~v~~ 108 (113)
|.+||++|-
T Consensus 82 f~~Pv~~GD 90 (132)
T d1iq6a_ 82 FKLPVFVGD 90 (132)
T ss_dssp ECSCCBTTC
T ss_pred ecccCCCcC
Confidence 999999984
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
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class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Monoamine oxidase regulatory protein
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=3.6e-23 Score=140.25 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC------
Q 033683 19 SLEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS------ 91 (113)
Q Consensus 19 ~~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg------ 91 (113)
.++|||++|||+++. .+++|++++.+|+.++||+||+|+|++||++.|++++++||+++.+++.+++.+++.+
T Consensus 4 p~~fed~~vG~~~~~~~~tit~~~i~~fa~~~gd~~pih~d~~~A~~~g~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~ 83 (151)
T d1q6wa_ 4 PIYFESIQIGEKIEGLPRTVTETDIWTFAYLTADFFPLHTDVEFAKKTIFGKPIAQGMLVLSIALGMVDQVILSNYDVSS 83 (151)
T ss_dssp BCCGGGCCTTCEEECCCEECCHHHHHHHHHHHTCCCHHHHCHHHHHTSTTSSCBCCHHHHHHHHHHHHHHHHHTTSBGGG
T ss_pred CccceecCCCCEEeecCeEECHHHHHHHHHHhCCCCceEEChhhhcccCCCcccchhHHHHHHHHHHHHHHhhccccccc
Confidence 368899999999986 7999999999999999999999999999999999999999999999999888765421
Q ss_pred Ccee---EEEEecccchhHHH
Q 033683 92 PTVS---FSFFSSFPCVVLWL 109 (113)
Q Consensus 92 ~~~~---~~~rF~~PV~v~~~ 109 (113)
.... .++||.+||++|-.
T Consensus 84 ~~~~~g~~~~~f~~Pv~~GDt 104 (151)
T d1q6wa_ 84 VIAFFGIKDVRFLRPVFIGDT 104 (151)
T ss_dssp EEEEEEEEEEEECSCCBTTCE
T ss_pred ceEEeeeeEEEEccccCCCCE
Confidence 1222 26899999999843
>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130 {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein Rv0130
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.87 E-value=2.2e-23 Score=141.82 Aligned_cols=88 Identities=16% Similarity=0.261 Sum_probs=76.1
Q ss_pred CCccC-----CCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC--
Q 033683 21 EPRIL-----KTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-- 91 (113)
Q Consensus 21 ~~ed~-----~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-- 91 (113)
.||++ .||+++.+ .+++|++|+.+||.+|||+||+|+|++||+++|++++++||+++.+++.+++.++.+.
T Consensus 2 ~~~~~~~~~~~vG~~i~~s~~~tVt~~~i~~Fa~~tgD~nPiH~D~~~A~~~~~~~~i~~g~~~~~l~~~~~~~~~~~~~ 81 (149)
T d2c2ia1 2 TFESVADLAAAAGEKVGQSDWVTITQEEVNLFADATGDHQWIHVDPERAAAGPFGTTIAHGFMTLALLPRLQHQMYTVKG 81 (149)
T ss_dssp EESSHHHHHHTTTSEEEECCCEECCHHHHHHHHHHHSCCCHHHHCHHHHHTSTTSSCBCCHHHHHHTHHHHHHTTCEESS
T ss_pred ccCCHHHHHHhcCCEecCCCCEEECHHHHHHHHHHHCCCCceEeCchHhcccCcCcceecchhhhhhhhhhccccccccc
Confidence 35556 49999986 4899999999999999999999999999999999999999999999999999876532
Q ss_pred --Ccee---EEEEecccchhHH
Q 033683 92 --PTVS---FSFFSSFPCVVLW 108 (113)
Q Consensus 92 --~~~~---~~~rF~~PV~v~~ 108 (113)
.... .++||.+||++|-
T Consensus 82 ~~~~~~~g~~~~rf~~PV~~GD 103 (149)
T d2c2ia1 82 VKLAINYGLNKVRFPAPVPVGS 103 (149)
T ss_dssp CSCEEEEEEEEEECCSCCBTTC
T ss_pred cceeEeeceeEEEEeccEeeCc
Confidence 1222 3799999999984
>d1s9ca1 d.38.1.4 (A:164-289) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6.5e-22 Score=131.09 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=64.8
Q ss_pred EeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCC-C---ceeEEEEecccchhHH
Q 033683 35 RIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVS-P---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 35 ~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg-~---~~~~~~rF~~PV~v~~ 108 (113)
...++.|+.+|+++|||+||||+|++|||++||+++|+|||++++++.+++.+++++ . ...+++||++||++|-
T Consensus 14 ~~~~~~~~~~~~~lSGD~NPIH~D~~~Ak~~g~~~~IahG~l~~a~~~~~~~~~~~~~~~~~~~~~~~rF~~Pv~~gd 91 (126)
T d1s9ca1 14 TDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQ 91 (126)
T ss_dssp EEECCTTHHHHHGGGSCCCGGGTCHHHHHTTTCSSCCCCHHHHHHHHHHHHHHHHSTTCGGGEEEEEEEECSCCCTTC
T ss_pred eeecChhHHHHHHHHCCCceeEeCHHHHhhcCCCCccchHHHHHHHHHHHHHHHhcccCceeEEEEEeEECCCCCCCC
Confidence 445778888888999999999999999999999999999999999999999887643 2 2456899999999984
>d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Yeast (Candida tropicalis) [TaxId: 5482]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase
species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.84 E-value=1e-21 Score=130.33 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=65.9
Q ss_pred eCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCceeEEEEecccchhHH
Q 033683 37 FSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTVSFSFFSSFPCVVLW 108 (113)
Q Consensus 37 it~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~~~~~rF~~PV~v~~ 108 (113)
.|++|+.+|+++|||+||||+|++|||++||+++|+|||+++|++.+++.++++ ....+++||.+||++|-
T Consensus 17 ~t~~d~~~~~~lSGD~NPiH~D~~~A~~~g~~~~IahG~~~~~~~~~~l~~~~~-~~~~~~~rF~~PV~~gd 87 (124)
T d1pn2a2 17 PVSEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKFG-MFNEIKARFTGIVFPGE 87 (124)
T ss_dssp ECCTTHHHHHGGGSCCCGGGTCHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHHC-CEEEEEEEECSCCCTTC
T ss_pred cCCHHHHHHHHHHCCCcceEcCHHHHhhcCCCCceehhHHHHHHHHHhhhhhcc-ccceEEEEECCCCCCCC
Confidence 588899999999999999999999999999999999999999999999999875 45678999999999984
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein Rv0216/MT0226
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=1.6e-21 Score=136.49 Aligned_cols=90 Identities=12% Similarity=-0.039 Sum_probs=76.8
Q ss_pred CCCccCCCCcEEee--eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHh-cCCCCceeChHHHHHHHHHHhhhhcCCCceeE
Q 033683 20 LEPRILKTGDILRQ--TRIFSSEDVVEYSKVSHDSNPLHFNSESARN-AGFDDRLVHGMLVASMFPQIISSHFVSPTVSF 96 (113)
Q Consensus 20 ~~~ed~~VG~~~~~--~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~-~g~~~~iv~G~l~~al~~~~l~~~lpg~~~~~ 96 (113)
++|||++|||++++ .+|+|++|+..|+.++||+||+|+|++||++ .+|+++++||+++.++..++..+..++.+..+
T Consensus 6 ~yfED~~vG~~~~~~~~rTiTe~di~~Fa~~tgD~~plH~D~e~aa~~~~~~~~ia~g~~~~~l~~~~~~~~~~~~~a~l 85 (178)
T d2bi0a1 6 PYFDDLSKGQVFDWAPGVTLSLGLAAAHQSIVGNRLRLALDSDLCAAVTGMPGPLAHPGLVCDVAIGQSTLATQRVKANL 85 (178)
T ss_dssp CCGGGCCTTCEECCSCCEECCHHHHHHHHHHHCCCCHHHHCHHHHHHHHCCSSCBCCHHHHHHHHHHHHTTTTTTCSEEE
T ss_pred cchhhcCCCCEeecCCCeEECHHHHHHHHHHHCCcccccccccccccccCCCccccccceeeeeecceeeecCCCceEEE
Confidence 46777999999985 6999999999999999999999999998655 68999999999999999888765555444433
Q ss_pred ---EEEecccchhHHH
Q 033683 97 ---SFFSSFPCVVLWL 109 (113)
Q Consensus 97 ---~~rF~~PV~v~~~ 109 (113)
++||.+||++|--
T Consensus 86 g~~~~rf~~PV~~GDT 101 (178)
T d2bi0a1 86 FYRGLRFHRFPAVGDT 101 (178)
T ss_dssp EEECEEBSSCCBTTCE
T ss_pred EeeeeEEeeeccCCCE
Confidence 5999999999843
>d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: Hypothetical protein Rv0216/MT0226
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=1.2e-19 Score=124.34 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=73.0
Q ss_pred CCCccCCCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhcCCCceeE--
Q 033683 20 LEPRILKTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHFVSPTVSF-- 96 (113)
Q Consensus 20 ~~~ed~~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~lpg~~~~~-- 96 (113)
.+|||+.+|+.+.. .+|+|+.| .|+.+++|.||+|+|++|| +++|+||+++.|++.+++.+.+++....+
T Consensus 17 ~~fed~~~G~~~~~~~~tvtea~--~fa~lt~d~~plH~D~~~a-----g~ria~G~lt~sl~~gl~~~~~~~~~~~lg~ 89 (152)
T d2bi0a2 17 PHFDAGIAGAVLHSTADLVSGAP--ELARLTLNIAATHHDWRVS-----GRRLVYGGHTIGLALAQATRLLPNLATVLDW 89 (152)
T ss_dssp CCCCGGGTTCEEECCCEECCCHH--HHHHHTTCCCGGGTCTTTT-----SSCCCCHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CchhhhcCceEEeCCCcEEehHH--HHHHHhCCCCceEcCHHHH-----hCCCccHHHHHHhHhheeeeccchhhhhhee
Confidence 67889999999976 79999988 5999999999999999987 67999999999999999998887765543
Q ss_pred -EEEecccchhHH
Q 033683 97 -SFFSSFPCVVLW 108 (113)
Q Consensus 97 -~~rF~~PV~v~~ 108 (113)
++||.+||++|-
T Consensus 90 ~~~rf~~PV~~GD 102 (152)
T d2bi0a2 90 ESCDHTAPVHEGD 102 (152)
T ss_dssp EEEEECSCCCTTC
T ss_pred eeeEEcccCCCCC
Confidence 699999999984
>d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: TTHA0967-like
domain: Hypothetical protein TTHA0967
species: Thermus thermophilus [TaxId: 274]
Probab=98.28 E-value=2.1e-08 Score=66.55 Aligned_cols=74 Identities=12% Similarity=-0.007 Sum_probs=54.3
Q ss_pred ccCCCCcEEeeeEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhhhc-CCC---ceeEEE
Q 033683 23 RILKTGDILRQTRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISSHF-VSP---TVSFSF 98 (113)
Q Consensus 23 ed~~VG~~~~~~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~~l-pg~---~~~~~~ 98 (113)
.+++||++...++++|++|...|+. +||.||++-.+. .++++.++. . ..+...+ ||. +..+++
T Consensus 2 ~~i~vG~~~~~~~~Vt~~~~~~f~~-sgd~~pv~at~~---------~ia~~e~~a--~-~~v~~~l~~G~~tVg~~~~i 68 (138)
T d2cwza1 2 RPIPEGYEAVFETVVTPEMTVRFEE-LGPVHPVYATYW---------MVKHMELAG--R-KIILPFLEEGEEGIGSYVEA 68 (138)
T ss_dssp CCCCTTCEEEEEEECCGGGEEEETT-TEEEEEEECHHH---------HHHHHHHHH--H-HHHTTTCCTTEEEEEEEEEE
T ss_pred CCCCCCcEEEEEEEeCHHHhHHHhh-cCCcccccchHH---------HHHHHHHHH--H-HHHHhhCCCCCCEEEEEEEE
Confidence 3599999999999999999999998 899999964332 355555544 2 2333344 454 345689
Q ss_pred EecccchhHHH
Q 033683 99 FSSFPCVVLWL 109 (113)
Q Consensus 99 rF~~PV~v~~~ 109 (113)
+|.+|+++|.-
T Consensus 69 ~hl~Pv~iG~~ 79 (138)
T d2cwza1 69 RHLASALPGMR 79 (138)
T ss_dssp EECSCCCTTCE
T ss_pred EEecccCCCcE
Confidence 99999999953
>d1s9ca2 d.38.1.4 (A:10-163) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: MaoC-like
domain: 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.2e-06 Score=58.14 Aligned_cols=82 Identities=9% Similarity=-0.088 Sum_probs=57.0
Q ss_pred CCCcEEee-eEeeCHHHHHHHHhhcCCCCCCCCCHHHHHhcCCCCceeChHHHHHHHHHHhhh----hcCC-----C-c-
Q 033683 26 KTGDILRQ-TRIFSSEDVVEYSKVSHDSNPLHFNSESARNAGFDDRLVHGMLVASMFPQIISS----HFVS-----P-T- 93 (113)
Q Consensus 26 ~VG~~~~~-~~tit~~di~~fa~~sgD~nPiH~D~~~Ak~~g~~~~iv~G~l~~al~~~~l~~----~lpg-----~-~- 93 (113)
.||.++++ ++++|+.|+..||.++|+.+|.+.|.+|+.+ +.++..|+..+...+....... ..++ . .
T Consensus 1 aiG~~~~~~~~~~t~~dv~~yA~~iG~~~~~~~dl~~~~e-~~~~~~a~Ptf~~~~~~~~~~~~~~~~~~g~~~~~~~~l 79 (154)
T d1s9ca2 1 AIGQKLPPFSYAYTELEAIMYALGVGASIKDPKDLKFIYE-GSSDFSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVL 79 (154)
T ss_dssp CTTCBCCCEEEEECHHHHHHHHHHTTCCTTSGGGHHHHCT-TSTTCCCCGGGHHHHTGGGTC----------------CE
T ss_pred CCCcccCCeeEEECHHHHHHHHHHhCCCCCCccccccccc-CCCCcccccceeeeecccccccchhhhccCCCCCcccEE
Confidence 47999987 8999999999999999998888888887754 6666677776654443332211 1121 1 1
Q ss_pred -eeEEEEecccchhHH
Q 033683 94 -VSFSFFSSFPCVVLW 108 (113)
Q Consensus 94 -~~~~~rF~~PV~v~~ 108 (113)
...+++|.+|+++|-
T Consensus 80 Hgeq~~~~~rPi~~gd 95 (154)
T d1s9ca2 80 HGEQYLELYKPLPRAG 95 (154)
T ss_dssp EEEEEEEESSCCCSSE
T ss_pred EeeeeEEEecCCCCCC
Confidence 234699999999873
>d2f41a1 d.38.1.5 (A:73-183) Transcription factor FapR, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: PaaI/YdiI-like
domain: Transcription factor FapR, C-terminal domain
species: Bacillus subtilis [TaxId: 1423]
Probab=94.09 E-value=0.037 Score=33.75 Aligned_cols=41 Identities=7% Similarity=-0.084 Sum_probs=30.5
Q ss_pred CCceeChHHHHHHHHHHhhhhcCCC---ceeEEEEecccchhHH
Q 033683 68 DDRLVHGMLVASMFPQIISSHFVSP---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 68 ~~~iv~G~l~~al~~~~l~~~lpg~---~~~~~~rF~~PV~v~~ 108 (113)
+..++||....+++...+....++. ....+++|.+|+.+|-
T Consensus 29 ~~g~~hGg~i~slad~~~~~~~~~~~~vt~~~~i~f~~pv~~Gd 72 (111)
T d2f41a1 29 RNQIARGHHLFAQANSLAVAVIDDELALTASADIRFTRQVKQGE 72 (111)
T ss_dssp TTCBBCHHHHHHHHHHHHHHTC---CCCEEEEEEEECSCCBTTC
T ss_pred ccCCccccchHHHHHHHHHhhcCCCcEEEEEEEEEEEEccccCc
Confidence 4469999999999988776555544 2356899999999994
>d1ixla_ d.38.1.5 (A:) Hypothetical protein PH1136 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: PaaI/YdiI-like
domain: Hypothetical protein PH1136
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.38 E-value=0.43 Score=29.49 Aligned_cols=40 Identities=18% Similarity=-0.002 Sum_probs=30.1
Q ss_pred CceeChHHHHHHHHHHhhhhcCCC---ceeEEEEecccchhHH
Q 033683 69 DRLVHGMLVASMFPQIISSHFVSP---TVSFSFFSSFPCVVLW 108 (113)
Q Consensus 69 ~~iv~G~l~~al~~~~l~~~lpg~---~~~~~~rF~~PV~v~~ 108 (113)
.-++||-..++++.........++ ..+++++|.+|+.+|-
T Consensus 43 ~G~vHGG~l~~l~D~a~~~a~~~~~~vT~~l~i~fl~pv~~G~ 85 (130)
T d1ixla_ 43 KGLVHGGFTFGLADYAAMLAVNEPTVVLGKAEVRFTKPVKVGD 85 (130)
T ss_dssp TCBBCHHHHHHHHHHHHHHHHCCTTEEEEEEEEEECSCCBTTC
T ss_pred CCcCcchHHHHHHhhhcccccccceEEEEEEEEEEeeccccCc
Confidence 348999999998887766444333 2457899999999983
