Citrus Sinensis ID: 033695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRSPQGKVAKATN
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccEEEEEccccccccccHccccHHHHHHHHHHHHHHHccccEEEccccccEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mqsssdmtdFHISTAFKALHsengylriqddtltgdeasvDVATKKNLESLVGIGerllkkpvtkvnfetglcepcgqgtnDEALIRLAKDLSKEkrirdmrspqgkvakatn
Flexible Loop (DISEMBL)
mqsssdmtDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLeslvgigerllkkpvtkVNFEtglcepcgqgtndeALIRLAKdlskekrirdmrspqgkvakatn
Low Complexity Region (SEG)
MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRSPQGKVAKATN
Disordered region (IsUnstruct)
*********FHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRL*************************
Disordered Region (DISOPRED)
**SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDL*********************
Disordered Region (DISEMBL)
********DFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR**************
Disordered Region (DISPRO)
***SSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDM************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRSPQGKVAKATN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q3YJT5	387	Patatin-05 OS=Solanum tub	N/A	no	0.769	0.224	0.484	2e-17
Q2MY54	387	Patatin group J-1 OS=Sola	N/A	no	0.769	0.224	0.484	2e-17
Q2MY48	387	Patatin-03 OS=Solanum tub	N/A	no	0.769	0.224	0.484	2e-17
Q2MY44	386	Patatin-07 OS=Solanum tub	N/A	no	0.769	0.225	0.484	3e-17
Q2MY41	386	Patatin-10 OS=Solanum tub	N/A	no	0.769	0.225	0.484	3e-17
Q2MY45	386	Patatin-06 OS=Solanum tub	N/A	no	0.769	0.225	0.484	3e-17
P15476	386	Patatin-B1 OS=Solanum tub	N/A	no	0.769	0.225	0.484	3e-17
Q42502	386	Patatin-2-Kuras 3 OS=Sola	N/A	no	0.769	0.225	0.474	3e-17
Q3YJT0	374	Patatin-2-Kuras 4 OS=Sola	N/A	no	0.769	0.232	0.484	4e-17
P11768	386	Patatin group M-1 OS=Sola	N/A	no	0.769	0.225	0.484	4e-17

>sp|Q3YJT5|PAT05_SOLTU Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD+++ST F+ LHS+N YLR+Q++ LTG     D A++ N+E LV +GE LLKKP
Sbjct: 295 ASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGENLLKKP 354

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K N E          T +EAL R AK LS  K+ R
Sbjct: 355 VSKDNPE----------TYEEALKRFAKLLSDRKKFR 381

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q2MY54|PATJ1_SOLTU Patatin group J-1 OS=Solanum tuberosum PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD++IST F+A HS+N YLR+Q++ LTG    +D A++ N+E LV +GE LLKKP
Sbjct: 295 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 354

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K + E          T +EAL R AK LS  K++R
Sbjct: 355 VSKDSPE----------TYEEALKRFAKLLSNRKKLR 381

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2MY48|PAT03_SOLTU Patatin-03 OS=Solanum tuberosum PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD+++ST F+ LHS+N YLR+Q++ LTG     D A++ N+E LV +GE LLKKP
Sbjct: 295 ASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGENLLKKP 354

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K N E          T +EAL R AK LS  K+ R
Sbjct: 355 VSKDNPE----------TYEEALKRFAKLLSDRKKFR 381

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2MY44|PAT07_SOLTU Patatin-07 OS=Solanum tuberosum PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD+++ST F+ LHS+N YLR+Q++ LTG     D A++ N+E LV +GE LLKKP
Sbjct: 294 ASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGENLLKKP 353

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K N E          T +EAL R AK LS  K+ R
Sbjct: 354 VSKDNPE----------TYEEALKRFAKLLSDRKKFR 380

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2MY41|PAT10_SOLTU Patatin-10 OS=Solanum tuberosum PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD++IST F+A HS+N YLR+Q++ LTG    +D A++ N+E LV +GE LLKKP
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K + E          T +EAL R AK LS  K++R
Sbjct: 354 VSKDSPE----------TYEEALKRFAKLLSNRKKLR 380

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2MY45|PAT06_SOLTU Patatin-06 OS=Solanum tuberosum PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD++IST F+A HS+N YLR+Q++ LTG    +D A++ N+E LV +GE LLKKP
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K + E          T +EAL R AK LS  K++R
Sbjct: 354 VSKDSPE----------TYEEALKRFAKLLSNRKKLR 380

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P15476|PATB1_SOLTU Patatin-B1 OS=Solanum tuberosum GN=PATB1 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD++IST F+A HS+N YLR+Q++ LTG    +D A++ N+E LV +GE LLKKP
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K + E          T +EAL R AK LS  K++R
Sbjct: 354 VSKDSPE----------TYEEALKRFAKLLSNRKKLR 380

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q42502|PT2K3_SOLTU Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 66/97 (68%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD+++ST F+A HS+N YLR+Q++ LTG    +D A++ N+E LV +GE+LLKKP
Sbjct: 294 ASSYMTDYYLSTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGEKLLKKP 353

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K + E          T +EAL R AK LS  K++R
Sbjct: 354 VSKDSPE----------TYEEALKRFAKLLSDRKKLR 380

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q3YJT0|PT2K4_SOLTU Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD++IST F+A HS+N YLR+Q++ LTG    +D A++ N+E LV +GE LLKKP
Sbjct: 282 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 341

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K + E          T +EAL R AK LS  K++R
Sbjct: 342 VSKDSPE----------TYEEALKRFAKLLSDRKKLR 368

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P11768|PATM1_SOLTU Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 10/97 (10%)

Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS MTD++IST F+A HS+N YLR+Q++ LTG    +D A++ N+E LV +GE LLKKP
Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353

Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V+K + E          T +EAL R AK LS  K++R
Sbjct: 354 VSKDSPE----------TYEEALKRFAKLLSDRKKLR 380

Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.

Solanum tuberosum (taxid: 4113)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
62766606	434	patatin-like protein [Gossypium hirsutum	1.0	0.260	0.672	2e-36
255538386	411	Patatin T5 precursor, putative [Ricinus	0.946	0.260	0.663	3e-35
147862341	407	hypothetical protein VITISV_021802 [Viti	0.946	0.262	0.675	1e-33
225458549	406	PREDICTED: patatin group A-3 [Vitis vini	0.946	0.263	0.675	1e-33
359492614	406	PREDICTED: patatin group A-3-like [Vitis	0.946	0.263	0.675	1e-33
147767297	446	hypothetical protein VITISV_001907 [Viti	0.920	0.233	0.685	2e-33
225458551	406	PREDICTED: patatin group A-3 [Vitis vini	0.920	0.256	0.685	2e-33
147792846	400	hypothetical protein VITISV_008805 [Viti	0.946	0.267	0.675	2e-33
302142354	849	unnamed protein product [Vitis vinifera]	0.946	0.126	0.675	2e-33
359492618	411	PREDICTED: patatin group A-3-like [Vitis	0.946	0.260	0.675	2e-33

>gi|62766606|gb|AAX99411.1| patatin-like protein [Gossypium hirsutum]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 91/113 (80%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+SSDM DFHI+T F+AL SEN YLRIQDDTL+   +SVD+ATK+NLE+LV +GE LLK
Sbjct: 311 MQASSDMVDFHIATVFQALQSENSYLRIQDDTLSQQISSVDIATKENLENLVKVGEELLK 370

Query: 61  KPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRSPQGKVAKATN 113
           KPV++VN E G  EP G+ TN EALIRLA  LSKEK++RDMRSP GK+A   N
Sbjct: 371 KPVSRVNLENGQFEPAGKITNGEALIRLAAVLSKEKQLRDMRSPLGKLAMKKN 423

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538386|ref|XP_002510258.1| Patatin T5 precursor, putative [Ricinus communis] gi|223550959|gb|EEF52445.1| Patatin T5 precursor, putative [Ricinus communis]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 88/107 (82%)

Query: 2   QSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK 61
           Q+SSDM D+H+S  F+ALHSE  YLRIQDDTL G E+SVD+ATK NL++LV IGERLLKK
Sbjct: 300 QASSDMVDYHLSAVFQALHSEQHYLRIQDDTLNGKESSVDIATKSNLKNLVKIGERLLKK 359

Query: 62  PVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRSPQGKV 108
           PV++VN ETG  EP  QGTN+EAL R A+ LS+EKR+R +RSP G++
Sbjct: 360 PVSRVNLETGRFEPIDQGTNEEALERFARILSEEKRLRHVRSPHGRL 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862341|emb|CAN81920.1| hypothetical protein VITISV_021802 [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 86/108 (79%), Gaps = 1/108 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDV T++NL++LV IGERLLK
Sbjct: 296 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVTTEENLDNLVKIGERLLK 355

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSPQGK 107
           KPV++VN ETGL EP    GTN+EAL R A  LS EKR+RD RSP  K
Sbjct: 356 KPVSRVNLETGLSEPVENGGTNEEALKRFATLLSDEKRLRDARSPNPK 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458549|ref|XP_002282432.1| PREDICTED: patatin group A-3 [Vitis vinifera] gi|302142353|emb|CBI19556.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 86/108 (79%), Gaps = 1/108 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDV T++NL++LV IGERLLK
Sbjct: 295 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVTTEENLDNLVKIGERLLK 354

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSPQGK 107
           KPV++VN ETGL EP    GTN+EAL R A  LS EKR+RD RSP  K
Sbjct: 355 KPVSRVNLETGLSEPVENGGTNEEALKRFATLLSDEKRLRDARSPNPK 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492614|ref|XP_002282415.2| PREDICTED: patatin group A-3-like [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 86/108 (79%), Gaps = 1/108 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDV T++NL++LV IGERLLK
Sbjct: 295 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVTTEENLDNLVKIGERLLK 354

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSPQGK 107
           KPV++VN ETGL EP    GTN+EAL R A  LS EKR+RD RSP  K
Sbjct: 355 KPVSRVNLETGLSEPVENGGTNEEALKRFATLLSDEKRLRDARSPNPK 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767297|emb|CAN71271.1| hypothetical protein VITISV_001907 [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 86/105 (81%), Gaps = 1/105 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDV T++NL++LV IGERLLK
Sbjct: 335 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVTTEENLDNLVKIGERLLK 394

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSP 104
           KPV++VN ETGL EP    GTN+EAL R AK LS EKR+R+ RSP
Sbjct: 395 KPVSRVNLETGLSEPVENGGTNEEALKRFAKLLSDEKRLRETRSP 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458551|ref|XP_002282440.1| PREDICTED: patatin group A-3 [Vitis vinifera] gi|302142352|emb|CBI19555.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 86/105 (81%), Gaps = 1/105 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDV T++NL++LV IGERLLK
Sbjct: 295 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVTTEENLDNLVKIGERLLK 354

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSP 104
           KPV++VN ETGL EP    GTN+EAL R AK LS EKR+R+ RSP
Sbjct: 355 KPVSRVNLETGLSEPVENGGTNEEALKRFAKLLSDEKRLRETRSP 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792846|emb|CAN68798.1| hypothetical protein VITISV_008805 [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 87/108 (80%), Gaps = 1/108 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDVAT++NL++LV IGERLLK
Sbjct: 289 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVATEENLDNLVKIGERLLK 348

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSPQGK 107
           KPV++VN ETGL EP    GTN+EAL R AK LS EKR+R+ R P  K
Sbjct: 349 KPVSRVNLETGLSEPVENGGTNEEALKRFAKLLSDEKRLRETRLPNPK 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142354|emb|CBI19557.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 86/108 (79%), Gaps = 1/108 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDV T++NL++LV IGERLLK
Sbjct: 295 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVTTEENLDNLVKIGERLLK 354

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSPQGK 107
           KPV++VN ETGL EP    GTN+EAL R A  LS EKR+RD RSP  K
Sbjct: 355 KPVSRVNLETGLSEPVENGGTNEEALKRFATLLSDEKRLRDARSPNPK 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492618|ref|XP_002282366.2| PREDICTED: patatin group A-3-like [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 87/108 (80%), Gaps = 1/108 (0%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           MQ+S+DM DFHIS  F+ALHSE+ YLRIQDDTL G +ASVDVAT++NL++LV IGERLLK
Sbjct: 300 MQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVATEENLDNLVKIGERLLK 359

Query: 61  KPVTKVNFETGLCEPC-GQGTNDEALIRLAKDLSKEKRIRDMRSPQGK 107
           KPV++VN ETGL EP    GTN+EAL R AK LS EKR+R+ R P  K
Sbjct: 360 KPVSRVNLETGLSEPVENGGTNEEALKRFAKLLSDEKRLRETRLPNPK 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2066286	407	PLA2A "phospholipase A 2A" [Ar	0.938	0.260	0.613	1.3e-29
TAIR|locus:2115065	428	PLP4 "AT4G37050" [Arabidopsis	0.911	0.240	0.528	1.1e-23
TAIR|locus:2114995	414	PLP1 [Arabidopsis thaliana (ta	0.911	0.248	0.528	1.3e-22
TAIR|locus:2158337	401	AT5G43590 [Arabidopsis thalian	0.876	0.246	0.46	1.4e-15

TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 65/106 (61%), Positives = 81/106 (76%)

Query:     2 QSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK 61
             Q+SSDM DFH+S  F+ALHSE  Y+RIQDDTLTGD ASVD+AT +NL+ L   G+ LLKK
Sbjct:   297 QASSDMVDFHLSAVFRALHSEANYIRIQDDTLTGDAASVDIATVENLDILAKTGDELLKK 356

Query:    62 PVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRSPQGK 107
             PV +VN ++G  E   + TN+ ALI+LA  LSKEK+IRD+RSP  K
Sbjct:   357 PVARVNLDSGCNENAYETTNEHALIKLAGILSKEKKIRDIRSPHAK 402

GO:0006629 "lipid metabolic process" evidence=IEA;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0045735 "nutrient reservoir activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IEP;IMP

GO:0016020 "membrane" evidence=IDA

GO:0016298 "lipase activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0008219 "cell death" evidence=IGI

GO:0031408 "oxylipin biosynthetic process" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 55/104 (52%), Positives = 76/104 (73%)

Query:     6 DMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTK 65
             DM D+  S  F+AL SE  YLRI DD+L GD  SVD++T+KN+E LV +GE LLKK V++
Sbjct:   325 DMVDYQSSVVFQALRSEKNYLRIDDDSLKGDLGSVDISTEKNMEGLVEVGEALLKKRVSR 384

Query:    66 VNFETGLCEPCGQG-TNDEALIRLAKDLSKEKRIRDMRSPQGKV 108
             VN E+G  +P  +  TN+EAL R AK LS+E+++R+ RSP+ K+
Sbjct:   385 VNLESGHYQPISENVTNEEALKRFAKVLSEERKLRESRSPKLKI 428

GO:0005575 "cellular_component" evidence=ND

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=ISS

GO:0004620 "phospholipase activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/104 (52%), Positives = 74/104 (71%)

Query:     1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
             M+SS DM  +H S  FKAL SE+ YLRI DDTL GD +++D+ATK NLE+L  IGE++L 
Sbjct:   296 MESSRDMIHYHSSVVFKALQSEDKYLRIDDDTLEGDVSTMDLATKSNLENLQKIGEKMLT 355

Query:    61 KPVTKVNFETGLCEPCGQG-TNDEALIRLAKDLSKEKRIRDMRS 103
               V ++N +TG+ EP  +  TNDE L R AK LS E+++R +RS
Sbjct:   356 NRVMQMNIDTGVYEPVAENITNDEQLKRYAKILSDERKLRRLRS 399

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0045735 "nutrient reservoir activity" evidence=ISS

GO:0004620 "phospholipase activity" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 46/100 (46%), Positives = 62/100 (62%)

Query:     2 QSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK 61
             +SS DM  +H S  F+AL SE+ YLRI  DTL  DE  +D +   NLE+L  IGE+LL  
Sbjct:   289 ESSRDMVQYHTSVLFQALESEDNYLRIDADTLKKDEVFMDDSETLNLENLKNIGEKLLDT 348

Query:    62 PVTKVNFETGLCEPCGQGTN-DEALIRLAKDLSKEKRIRD 100
              V ++N +T   EP  +  N D+ L R AK LS EK++R+
Sbjct:   349 NVMRMNLDTYTYEPIPKTVNNDQELKRFAKILSDEKKLRN 388


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      113       113   0.00091  102 3  11 23  0.38    31
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  503 (54 KB)
  Total size of DFA:  99 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.56u 0.14s 11.70t   Elapsed:  00:00:02
  Total cpu time:  11.56u 0.14s 11.70t   Elapsed:  00:00:02
  Start:  Fri May 10 00:13:33 2013   End:  Fri May 10 00:13:35 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014774001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (406 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
cd07214	349	cd07214, Pat17_isozyme_like, Patatin-like phosphol	1e-31
cd07215	329	cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p	1e-04
cd07199	258	cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph	0.001

>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants

 Score =  113 bits (285), Expect = 1e-31
 Identities = 45/70 (64%), Positives = 57/70 (81%)

Query: 2   QSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK 61
            +SSDM D+H+S  F+AL SE  YLRIQDD+LTG  +SVD AT++NLE LV IG++LLKK
Sbjct: 280 NASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKK 339

Query: 62  PVTKVNFETG 71
           PV++VN ETG
Sbjct: 340 PVSRVNLETG 349

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates. Length = 349

>gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           M  +S   D+ +   F A   +  YLRIQ +    D   +D A+ +NLE L  +G+ L +
Sbjct: 258 MDGASQTVDYQLKQIFDAEGDQQQYLRIQPELEDADPE-MDDASPENLEKLREVGQALAE 316

Query: 61  KPVTKVN 67
               +++
Sbjct: 317 DHKDQLD 323

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum. Length = 329

>gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
           M + SD  D  +   F +L S++ YLRI    L G   ++D A++ NL +L      L++
Sbjct: 200 MDAQSDGVDQWLDLLFGSLDSKDNYLRINPP-LPGPIPALDDASEANLLALDSAAFELIE 258

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum. Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
cd07214	349	Pat17_isozyme_like Patatin-like phospholipase of p	99.69
cd07215	329	Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa	99.48
KOG0513	503	consensus Ca2+-independent phospholipase A2 [Lipid	99.2
cd07199	258	Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas	98.33
cd07211	308	Pat_PNPLA8 Patatin-like phospholipase domain conta	98.27
cd07213	288	Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa	98.16
cd07212	312	Pat_PNPLA9 Patatin-like phospholipase domain conta	97.04
cd07216	309	Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa	96.43
KOG4231	763	consensus Intracellular membrane-bound Ca2+-indepe	86.28

>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants

Probab=99.69  E-value=3.2e-17  Score=133.30  Aligned_cols=71  Identities=63%  Similarity=0.953  Sum_probs=66.0

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCC
Q 033695            1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETG   71 (113)
Q Consensus         1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg   71 (113)
                      |+|++|||||+++++|+.+++.+||+|||++.+.+...+||++|++|++.|+++|++||++++..+|++||
T Consensus       279 ~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~~d~~~~~ni~~L~~~a~~~l~~~~~~~~~~~~  349 (349)
T cd07214         279 SNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSRVNLETG  349 (349)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccCcccCCHHHHHHHHHHHHHHHhCcccccCCCCC
Confidence            57899999999999999888999999999995566557899999999999999999999999999999997

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.

>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria

Probab=99.48  E-value=6.6e-14  Score=112.45  Aligned_cols=72  Identities=29%  Similarity=0.507  Sum_probs=66.7

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCC
Q 033695            1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGT   80 (113)
Q Consensus         1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~t   80 (113)
                      |+|++|+|||+++++|+...+.++|+|||++ ++....+||+++++||+.|..+|+++++                   .
T Consensus       258 ~~~~~~~~d~~~~~l~~~~~~~~~Y~Ri~~~-l~~~~~~lD~a~~~~i~~L~~~~~~~~~-------------------~  317 (329)
T cd07215         258 MDGASQTVDYQLKQIFDAEGDQQQYLRIQPE-LEDADPEMDDASPENLEKLREVGQALAE-------------------D  317 (329)
T ss_pred             HhhhHHHHHHHHHHHHhhcCCCCceEEEeCC-CCCCccccccCCHHHHHHHHHHHHHHHH-------------------H
Confidence            5788999999999999877888999999999 8887778999999999999999999999                   7


Q ss_pred             HHHHHHHHHHHH
Q 033695           81 NDEALIRLAKDL   92 (113)
Q Consensus        81 N~e~L~~fA~~L   92 (113)
                      |++.|+.||+.|
T Consensus       318 ~~~~i~~~~~~~  329 (329)
T cd07215         318 HKDQLDEIVDRL  329 (329)
T ss_pred             hHHHHHHHHHhC
Confidence            999999999875

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]

Probab=99.20  E-value=2.5e-11  Score=103.89  Aligned_cols=107  Identities=36%  Similarity=0.429  Sum_probs=97.2

Q ss_pred             cchHHHHH----HHHHHHhhhcCCCCCeeeee--cCCCCCCchhhhhcc-HHHHHHHHH--HHHHhhcCCcccccccCCc
Q 033695            2 QSSSDMTD----FHISTAFKALHSENGYLRIQ--DDTLTGDEASVDVAT-KKNLESLVG--IGERLLKKPVTKVNFETGL   72 (113)
Q Consensus         2 ~gssDmVD----~~ls~lf~~~~~~~nYlRIQ--~~~L~~~~~~mD~At-~~Nl~~L~~--ig~~LL~~~v~~vn~~tg~   72 (113)
                      ++|.|+||    ++..++|.+.+++.+|.|||  .....|....||... ..|+..+..  +|++|+..++.+.+.++|+
T Consensus       344 ~~s~d~v~~~y~~~k~~~F~~~r~~~~~~~Ie~~~~~~~G~~~~~di~~~~~nl~~~~~~~~~~~l~~~rn~~~~i~~~~  423 (503)
T KOG0513|consen  344 DGSSDEVDRMYLQMKDVVFDGLRSEYNYVRIECAIDRLFGDAPSMDIDGIRLNLTGLLVDITGEELLMARNYRHNINGGK  423 (503)
T ss_pred             cccHHHHHHHHHHHhHHhhhcccCCCCccchhhhhhcccCccccccCCcchhhhhhhhccccHHHHHHhhcccccccccc
Confidence            68999999    99999999999999999999  666788888999888 679999999  9999999999999999999


Q ss_pred             cccCCC-CCHHHHHHHHHHHHHHHHhhhhcCCCCCcccc
Q 033695           73 CEPCGQ-GTNDEALIRLAKDLSKEKRIRDMRSPQGKVAK  110 (113)
Q Consensus        73 ~e~~~~-~tN~e~L~~fA~~L~~Erk~R~~~~~~~~~~~  110 (113)
                        |..+ .+|.++++++|.+|+.|+++|+.+.|+....+
T Consensus       424 --~~~~~~snde~~~~~~~~l~we~~rrss~a~~~f~~~  460 (503)
T KOG0513|consen  424 --PRSEEVSNDEALEEPAMQLVWEAKRRSSRAPPTFPPS  460 (503)
T ss_pred             --ccccccccchhhhhHHHHHHHHHHHhccCCCCccccc
Confidence              6555 89999999999999999999999988875544

>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17

Probab=98.33  E-value=1e-06  Score=68.16  Aligned_cols=59  Identities=32%  Similarity=0.442  Sum_probs=52.7

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhc
Q 033695            1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK   60 (113)
Q Consensus         1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~   60 (113)
                      |+++.|++|+++..+|+.....++|+||++. +......+|+++++|++.|..++++++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~~-~~~~~~~~d~~~~~~~~~l~~~~~~~~~  258 (258)
T cd07199         200 MDAQSDGVDQWLDLLFGSLDSKDNYLRINPP-LPGPIPALDDASEANLLALDSAAFELIE  258 (258)
T ss_pred             HHhhHHHHHHHHHHHhhcccCCCeEEEEcCC-CCCCcccchhCCHHHHHHHHHHHHHHhC
Confidence            4678999999999999866678899999999 8888878999999999999999998863

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8

Probab=98.27  E-value=1.4e-06  Score=69.22  Aligned_cols=52  Identities=12%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcC
Q 033695            4 SSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK   61 (113)
Q Consensus         4 ssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~   61 (113)
                      +++.||+++..++.    +++|+|||+. +... .+||+++++||+.|.++|+++|++
T Consensus       256 ~~~~~~~~~~~~~~----~~~Y~R~~~~-~~~~-~~ld~~~~~~i~~l~~~~~~yl~~  307 (308)
T cd07211         256 DTERVHTALDDLLP----PDVYFRFNPV-MSEC-VELDETRPEKLDQLQDDTLEYIKR  307 (308)
T ss_pred             ChHHHHHHHHHhcC----CCceEEeccc-ccCC-CCcccCCHHHHHHHHHHHHHHHhc
Confidence            56899999999873    5799999999 7666 789999999999999999999974

PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.

>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase

Probab=98.16  E-value=2.5e-06  Score=67.47  Aligned_cols=49  Identities=29%  Similarity=0.529  Sum_probs=42.5

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHh
Q 033695            1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERL   58 (113)
Q Consensus         1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~L   58 (113)
                      |+|.++++|++++++|+     ++|+|||+. ++   ..+|..+++||+.|+++|++.
T Consensus       236 ~~~~~~~~~~~~~~~~~-----~~y~Ri~~~-l~---~~~~~~~~~~i~~l~~~~~~~  284 (288)
T cd07213         236 MDAGVDAADFQCRQLLG-----ERYFRLDPV-LP---ANIDLDDNKQIEELVEIANTV  284 (288)
T ss_pred             HHHHHHHHHHHHHHHcc-----CcEEEeCCC-CC---cccCccCHHHHHHHHHHHHhc
Confidence            46889999999999984     799999999 74   247888899999999999875

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9

Probab=97.04  E-value=0.00041  Score=55.98  Aligned_cols=38  Identities=16%  Similarity=0.228  Sum_probs=33.9

Q ss_pred             CCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcC
Q 033695           22 ENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKK   61 (113)
Q Consensus        22 ~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~   61 (113)
                      +.+|+|+|+. |. ...+||+++++||.+|...++.+|.+
T Consensus       273 ~~~Y~Rfn~~-l~-~~~~lde~~~~~l~~l~~~~~~yi~~  310 (312)
T cd07212         273 GIPYFRFSPP-LS-KDIMLDETDDEDLVNMLWDTEVYIYT  310 (312)
T ss_pred             CCceEEeCCc-cC-CCcCCCcCCHHHHHHHHHHHHHHHHh
Confidence            4689999999 65 56699999999999999999999983

PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.

>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase

Probab=96.43  E-value=0.0055  Score=48.83  Aligned_cols=54  Identities=17%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhh
Q 033695            1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLL   59 (113)
Q Consensus         1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL   59 (113)
                      +++.++.+|++....+  +...++|+|||++ +.....+||+  .++++.|...++++|
T Consensus       255 ~d~~~~~~~~~~~~~~--~~~~~~Y~R~n~~-~~~~~~~ld~--~~~~~~l~~~t~~yl  308 (309)
T cd07216         255 TDTEAEAKRFSAEHSE--LDEEGRYFRFNVP-HGLEDVGLDE--YEKMEEIVSLTREYL  308 (309)
T ss_pred             hChHHHHHHHHHHHhc--cCCCCeEEEECCC-CCCCCCChhh--hccHHHHHHHHHHhh
Confidence            3677788888877622  1235799999999 7656568999  568999999999887

Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.

>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]

Probab=86.28  E-value=0.99  Score=40.32  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             cCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCHHHHHHHHHHHHHHH
Q 033695           19 LHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKE   95 (113)
Q Consensus        19 ~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN~e~L~~fA~~L~~E   95 (113)
                      .-+++.|+|+.+- .... -.+|-..++-+..|...+++.++                   .|..+++..|+.|+.+
T Consensus       677 mLPe~~YfRFNPv-m~~~-~~LDE~d~e~l~ql~~~~e~yI~-------------------rN~qk~k~vaerL~l~  732 (763)
T KOG4231|consen  677 MLPEIQYFRFNPV-MDRC-MELDETDPEILLQLEAAIEEYIQ-------------------RNPQKFKNVAERLTLP  732 (763)
T ss_pred             cCCchheEecchh-hhcc-cCcCccCHHHHHHHHHHHHHHHH-------------------hChHHHHHHHHHhcCC
Confidence            4467899999887 4444 58999999999999999999999                   7999999999988865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
1oxw_A	373	The Crystal Structure Of Semet Patatin Length = 373		6e-16

>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 10/97 (10%)
Query: 3   SSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKP 62
           +SS  TD+++STAF+AL S+N YLR+Q++ LTG     D A++ N E LV +GE LLKKP
Sbjct: 281 ASSYXTDYYLSTAFQALDSKNNYLRVQENALTGTTTEXDDASEANXELLVQVGENLLKKP 340
Query: 63  VTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 99
           V++ N E          T +EAL R AK LS  K++R
Sbjct: 341 VSEDNPE----------TYEEALKRFAKLLSDRKKLR 367

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
1oxw_A	373	Patatin; alpha/beta class fold with approximately	2e-27

>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373

 Score =  102 bits (254), Expect = 2e-27
 Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 10/104 (9%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
             +SS MTD+++STAF+AL S+N YLR+Q++ LTG    +D A++ N+E LV +GE LLK
Sbjct: 279 DAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLK 338

Query: 61  KPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRSP 104
           KPV++ N E          T +EAL R AK LS  K++R  ++ 
Sbjct: 339 KPVSEDNPE----------TYEEALKRFAKLLSDRKKLRANKAS 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
1oxw_A	373	Patatin; alpha/beta class fold with approximately	99.9

>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3

Probab=99.90  E-value=4.6e-24  Score=172.59  Aligned_cols=94  Identities=50%  Similarity=0.693  Sum_probs=87.8

Q ss_pred             CcchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCC
Q 033695            1 MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGT   80 (113)
Q Consensus         1 ~~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~t   80 (113)
                      |+|++||||+|++++|+.+.++++|+|||++.|++...+||+++++||+.|+++|+++|+++|++||++          |
T Consensus       279 ~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~~~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~----------t  348 (373)
T 1oxw_A          279 DAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE----------T  348 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCC----------B
T ss_pred             HHhhHHHHHHHHHHHhhccCCCCcEEEEeCCCCCCcccccccCCHHHHHHHHHHHHHHHhcccccccch----------h
Confidence            357899999999999998888999999999768888899999999999999999999999999999998          5


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCC
Q 033695           81 NDEALIRLAKDLSKEKRIRDMRSP  104 (113)
Q Consensus        81 N~e~L~~fA~~L~~Erk~R~~~~~  104 (113)
                      |+++|++||++|++||++|..+.|
T Consensus       349 n~~~l~~~a~~L~~e~~~r~~~~~  372 (373)
T 1oxw_A          349 YEEALKRFAKLLSDRKKLRANKAS  372 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHhhcccccCC
Confidence            999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1oxwa_	360	c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan	1e-26

>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score = 98.5 bits (244), Expect = 1e-26
 Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 10/103 (9%)

Query: 1   MQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLK 60
             +SS MTD+++STAF+AL S+N YLR+Q++ LTG    +D A++ N+E LV +GE LLK
Sbjct: 268 DAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLK 327

Query: 61  KPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIRDMRS 103
           KPV++ N E          T +EAL R AK LS  K++R  ++
Sbjct: 328 KPVSEDNPE----------TYEEALKRFAKLLSDRKKLRANKA 360

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1oxwa_	360	Patatin {Heartleaf nightshade (Solanum cardiophyll	99.67

>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=99.67  E-value=7.2e-17  Score=123.91  Aligned_cols=91  Identities=52%  Similarity=0.722  Sum_probs=82.5

Q ss_pred             cchHHHHHHHHHHHhhhcCCCCCeeeeecCCCCCCchhhhhccHHHHHHHHHHHHHhhcCCcccccccCCccccCCCCCH
Q 033695            2 QSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTN   81 (113)
Q Consensus         2 ~gssDmVD~~ls~lf~~~~~~~nYlRIQ~~~L~~~~~~mD~At~~Nl~~L~~ig~~LL~~~v~~vn~~tg~~e~~~~~tN   81 (113)
                      .++.+|+|+++..+|+.+...++|+||+++.+.+....|||+|+++|+.|.++|+++++++...+|.+          ||
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l~~l~~~g~~~~~~~~~~~~~~----------~~  338 (360)
T d1oxwa_         269 AASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE----------TY  338 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCC----------BH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCcEEEEcCCccccccccccCCCHHHHHHHHHHHHHHHhhhhhhhhhh----------HH
Confidence            35789999999999998888889999999866667779999999999999999999999988888877          79


Q ss_pred             HHHHHHHHHHHHHHHhhhhcC
Q 033695           82 DEALIRLAKDLSKEKRIRDMR  102 (113)
Q Consensus        82 ~e~L~~fA~~L~~Erk~R~~~  102 (113)
                      +++|++||+.|++||++|..+
T Consensus       339 ~~~L~~~~~~L~~er~~r~~~  359 (360)
T d1oxwa_         339 EEALKRFAKLLSDRKKLRANK  359 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999865