Citrus Sinensis ID: 033706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccHHccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHcccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mathsdsvagkksndvsndlQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Flexible Loop (DISEMBL)
mathsdsvagkksndvsnDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Low Complexity Region (SEG)
MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Disordered region (IsUnstruct)
*******************LQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYF*
Disordered Region (DISOPRED)
*************************ENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Disordered Region (DISEMBL)
*************NDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Disordered Region (DISPRO)
*****************NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q1ZXH4	123	ER membrane protein compl	yes	no	0.787	0.723	0.370	2e-11
Q3ZCG8	110	ER membrane protein compl	yes	no	0.743	0.763	0.428	1e-10
Q9CQW0	110	ER membrane protein compl	yes	no	0.743	0.763	0.428	5e-10
Q9BV81	110	ER membrane protein compl	yes	no	0.743	0.763	0.428	5e-10
Q6P0F0	110	ER membrane protein compl	yes	no	0.884	0.909	0.4	1e-09
Q6GLC5	110	ER membrane protein compl	yes	no	0.805	0.827	0.395	2e-09
Q68EU8	110	ER membrane protein compl	N/A	no	0.805	0.827	0.395	3e-09

>sp|Q1ZXH4|EMC6_DICDI ER membrane protein complex subunit 6 OS=Dictyostelium discoideum GN=emc6 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%)

Query: 23  FNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFS 82
           +  E +Q N K + + +  +SI+GG IAG++GF+G+ GF+FYF I          K   +
Sbjct: 27  YEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKN 86

Query: 83  VHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           +H YF +   I  D    GLM ++LFWT+
Sbjct: 87  LHLYFPNPRSIWFDSIGAGLMPYILFWTF 115

Dictyostelium discoideum (taxid: 44689)

>sp|Q3ZCG8|EMC6_BOVIN ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 52/84 (61%)

Query: 28  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA+   + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78

Query: 88  DSWNRILLDGFLGGLMSFVLFWTY 111
            S   +   G +GGL ++VLFWT+
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTF 102

Bos taurus (taxid: 9913)

>sp|Q9CQW0|EMC6_MOUSE ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query: 28  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query: 88  DSWNRILLDGFLGGLMSFVLFWTY 111
            S   +   G +GGL ++VLFWT+
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTF 102

Mus musculus (taxid: 10090)

>sp|Q9BV81|EMC6_HUMAN ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query: 28  LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
           ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query: 88  DSWNRILLDGFLGGLMSFVLFWTY 111
            S   +   G +GGL ++VLFWT+
Sbjct: 79  KSRRPLFTGGLIGGLFTYVLFWTF 102

Homo sapiens (taxid: 9606)

>sp|Q6P0F0|EMC6_DANRE ER membrane protein complex subunit 6 OS=Danio rerio GN=emc6 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 5/105 (4%)

Query: 7   SVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFL 66
           SVA K+        Q  +  +++ N  V+ Y RT +S + G  AGILG TGL GFVFYFL
Sbjct: 3   SVAAKREGP-----QFISEVSVRGNGAVLDYCRTSVSALSGATAGILGLTGLYGFVFYFL 57

Query: 67  IMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
              + S+ L+ KA    +  F S   +   G +GGL ++VLFWT+
Sbjct: 58  ASFLLSLLLILKAGRRWNKCFKSRRLLFTGGLVGGLFTYVLFWTF 102

Danio rerio (taxid: 7955)

>sp|Q6GLC5|EMC6_XENTR ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%)

Query: 21  QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
           Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+ 
Sbjct: 12  QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSG 71

Query: 81  FSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
              + YF S   +   G +GGL ++VLFWT+
Sbjct: 72  RKWNKYFKSRKPLFTGGLIGGLFTYVLFWTF 102

Xenopus tropicalis (taxid: 8364)

>sp|Q68EU8|EMC6_XENLA ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 53/91 (58%)

Query: 21  QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
           Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+ 
Sbjct: 12  QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSG 71

Query: 81  FSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
              + YF S   +   G +GGL ++VLFWT+
Sbjct: 72  RKWNKYFKSRKPLFTGGLVGGLFTYVLFWTF 102

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
296083215	474	unnamed protein product [Vitis vinifera]	0.973	0.232	0.828	6e-46
225432031	120	PREDICTED: transmembrane protein 93-like	0.973	0.916	0.828	4e-45
224112014	117	predicted protein [Populus trichocarpa]	0.964	0.931	0.810	4e-44
224099101	117	predicted protein [Populus trichocarpa]	0.964	0.931	0.792	7e-44
351734464	120	uncharacterized protein LOC100306269 [Gl	0.982	0.925	0.767	4e-42
449435645	119	PREDICTED: ER membrane protein complex s	0.982	0.932	0.729	2e-40
351728001	120	uncharacterized protein LOC100306572 [Gl	0.893	0.841	0.782	1e-38
357448845	117	Transmembrane protein [Medicago truncatu	0.831	0.803	0.819	3e-38
357448843	120	Transmembrane protein [Medicago truncatu	0.831	0.783	0.808	8e-38
357454297	120	Transmembrane protein [Medicago truncatu	0.831	0.783	0.808	1e-37

>gi|296083215|emb|CBI22851.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (475), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 92/111 (82%), Positives = 100/111 (90%), Gaps = 1/111 (0%)

Query: 1   MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 59
           MA  +DS A  KKSN+ +ND+  FNAENLQSNMK+IYYSRTFLSIIGGVIAGILGFTG  
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 60  GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWT 110
           GF+FYFL+MAITSV LMAKAKFSVHSYFDSWNRI+LDGFLGGLMSFVLFWT
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMSFVLFWT 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432031|ref|XP_002280085.1| PREDICTED: transmembrane protein 93-like [Vitis vinifera]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 100/111 (90%), Gaps = 1/111 (0%)

Query: 1   MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 59
           MA  +DS A  KKSN+ +ND+  FNAENLQSNMK+IYYSRTFLSIIGGVIAGILGFTG  
Sbjct: 1   MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 60

Query: 60  GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWT 110
           GF+FYFL+MAITSV LMAKAKFSVHSYFDSWNRI+LDGFLGGLMSFVLFWT
Sbjct: 61  GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMSFVLFWT 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112014|ref|XP_002316053.1| predicted protein [Populus trichocarpa] gi|222865093|gb|EEF02224.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 99/111 (89%), Gaps = 2/111 (1%)

Query: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60
           MA H++S   KKS+D  NDLQ F AENLQSNMKVIYYSRTFLSIIGGVIAGILG TGL G
Sbjct: 1   MAGHNES--EKKSSDAVNDLQTFRAENLQSNMKVIYYSRTFLSIIGGVIAGILGLTGLTG 58

Query: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           FVFYFL+M ITSV L+AKAKFS+H+YFDSWNR+LLDGFLGGLMSFVLFWT+
Sbjct: 59  FVFYFLMMTITSVALIAKAKFSIHTYFDSWNRVLLDGFLGGLMSFVLFWTF 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099101|ref|XP_002311375.1| predicted protein [Populus trichocarpa] gi|222851195|gb|EEE88742.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 100/111 (90%), Gaps = 2/111 (1%)

Query: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60
           MA H++S   KKS+D  +DLQ F AENLQSNMKVIYYSRTFLSIIGGV+AGILGFTGL G
Sbjct: 1   MAGHNES--EKKSSDALDDLQTFRAENLQSNMKVIYYSRTFLSIIGGVVAGILGFTGLTG 58

Query: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           FVFYFL+MAITSV L+AKAKFS+H+YFDSWNR++ DGFLGGLMSFVLFWT+
Sbjct: 59  FVFYFLVMAITSVALIAKAKFSIHTYFDSWNRVVFDGFLGGLMSFVLFWTF 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734464|ref|NP_001236282.1| uncharacterized protein LOC100306269 [Glycine max] gi|255628061|gb|ACU14375.1| unknown [Glycine max]

 Score =  174 bits (442), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 99/112 (88%), Gaps = 1/112 (0%)

Query: 1   MATHSDSVAG-KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLM 59
           MA HSDS +  KKS++  N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL 
Sbjct: 1   MAVHSDSASSEKKSSNGVNELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLK 60

Query: 60  GFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           GFVFY L+MA TS+ L+AKAKFS H+YFDSWNR+LLDGFLGGLMSFVLFWT+
Sbjct: 61  GFVFYLLLMAFTSLGLVAKAKFSTHTYFDSWNRVLLDGFLGGLMSFVLFWTF 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435645|ref|XP_004135605.1| PREDICTED: ER membrane protein complex subunit 6-like [Cucumis sativus]

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 98/111 (88%)

Query: 1   MATHSDSVAGKKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMG 60
           MA +S + + KKS+D+++D+ IFNAENLQ+N+K+IYYSRTFLSIIGGVIAG+LGFTGL G
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           F+FYFL+MAITSV L AKA FS HSYF+S N+IL DGFL GLMSFVLFWT+
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLMSFVLFWTF 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728001|ref|NP_001236924.1| uncharacterized protein LOC100306572 [Glycine max] gi|255628917|gb|ACU14803.1| unknown [Glycine max]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 90/101 (89%)

Query: 11  KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAI 70
           KK  D  NDL  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFT L GFVFYFL+M +
Sbjct: 12  KKPGDGVNDLLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTSLKGFVFYFLLMMV 71

Query: 71  TSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           TS+ L+AKA+FS+HSYFDS NR+LLDGFLGGLMSFVLFWT+
Sbjct: 72  TSLGLVAKARFSIHSYFDSSNRVLLDGFLGGLMSFVLFWTF 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448845|ref|XP_003594698.1| Transmembrane protein [Medicago truncatula] gi|355483746|gb|AES64949.1| Transmembrane protein [Medicago truncatula]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/94 (81%), Positives = 87/94 (92%)

Query: 18  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 77
           N+L  FNAEN+QSNMK IYYSRTFLSIIGGV+AGILGFTGL GF+FY L+MA TSV L+A
Sbjct: 19  NELLTFNAENMQSNMKTIYYSRTFLSIIGGVVAGILGFTGLKGFIFYVLLMAFTSVGLIA 78

Query: 78  KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           KAKFS+H+YFDSWNR+L+DGFLGGLMSFVLFWTY
Sbjct: 79  KAKFSIHTYFDSWNRVLIDGFLGGLMSFVLFWTY 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448843|ref|XP_003594697.1| Transmembrane protein [Medicago truncatula] gi|355483745|gb|AES64948.1| Transmembrane protein [Medicago truncatula]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 87/94 (92%)

Query: 18  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 77
           N+L  FNAEN+QSNMK IYYSRTFLSIIGGV+AGILGFTGL GF+FY L+MA TSV L+A
Sbjct: 19  NELLTFNAENMQSNMKTIYYSRTFLSIIGGVVAGILGFTGLKGFIFYVLLMAFTSVGLIA 78

Query: 78  KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           KAKFS+H+YFDSWNR+L+DGFLGGLMSFVLFWT+
Sbjct: 79  KAKFSIHTYFDSWNRVLIDGFLGGLMSFVLFWTF 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454297|ref|XP_003597429.1| Transmembrane protein [Medicago truncatula] gi|355486477|gb|AES67680.1| Transmembrane protein [Medicago truncatula]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 88/94 (93%)

Query: 18  NDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMA 77
           N+L  FNAEN+QSNMK+IYYSRTFLSIIGGV+AGILGFTGL GFVFY L+MA TS+ L+A
Sbjct: 19  NELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLKGFVFYALLMAFTSLGLVA 78

Query: 78  KAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
           KAKFS+H+YFDSWNR+L+DGFLGGLMSFVLFWT+
Sbjct: 79  KAKFSIHTYFDSWNRVLIDGFLGGLMSFVLFWTF 112

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
TAIR|locus:2157849	114	AT5G49540 "AT5G49540" [Arabido	0.893	0.885	0.712	1.2e-35
UNIPROTKB|F1NHM7	112	TMEM93 "Uncharacterized protei	0.805	0.812	0.406	5.4e-15
UNIPROTKB|Q3ZCG8	110	EMC6 "ER membrane protein comp	0.743	0.763	0.428	1.1e-14
UNIPROTKB|Q9BV81	110	EMC6 "ER membrane protein comp	0.743	0.763	0.428	2.3e-14
MGI|MGI:1913298	110	Emc6 "ER membrane protein comp	0.743	0.763	0.428	2.3e-14
RGD|1309231	110	Emc6 "ER membrane protein comp	0.743	0.763	0.428	2.3e-14
UNIPROTKB|F1N0Z5	110	EMC6 "ER membrane protein comp	0.743	0.763	0.428	3e-14
UNIPROTKB|E2R7Q9	110	EMC6 "Uncharacterized protein"	0.743	0.763	0.428	3e-14
UNIPROTKB|F1RHE3	110	EMC6 "Uncharacterized protein"	0.743	0.763	0.428	3e-14
UNIPROTKB|Q6GLC5	110	emc6 "ER membrane protein comp	0.805	0.827	0.395	3.8e-14

TAIR|locus:2157849 AT5G49540 "AT5G49540" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 72/101 (71%), Positives = 86/101 (85%)

Query:    11 KKSNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAI 70
             K+S D+ +D+  F+AENLQ+N+KVI  SRTFLSII GV+AGI+GF GL+GFVFYF++M I
Sbjct:     6 KRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVVMLI 65

Query:    71 TSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
             TSV LMAKA FS   YFDSWNR+L DGFLGGLMSFVLFWT+
Sbjct:    66 TSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLMSFVLFWTF 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|F1NHM7 TMEM93 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/91 (40%), Positives = 54/91 (59%)

Query:    21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
             Q  +   ++ N  ++ Y RT +S + G  AGILG TGL GF+FYFL   + S+ L+ KA 
Sbjct:    14 QFISEAAVRGNAAILDYCRTSVSALSGATAGILGLTGLHGFIFYFLASVLLSLLLVLKAG 73

Query:    81 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
                + YF S   +   G +GGL ++VLFWT+
Sbjct:    74 RRWNKYFKSRRPLFTGGLIGGLFTYVLFWTF 104

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q3ZCG8 EMC6 "ER membrane protein complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/84 (42%), Positives = 52/84 (61%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA+   + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKARRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTY 111
              S   +   G +GGL ++VLFWT+
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTF 102

GO:0072546 "ER membrane protein complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q9BV81 EMC6 "ER membrane protein complex subunit 6" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTY 111
              S   +   G +GGL ++VLFWT+
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTF 102

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

MGI|MGI:1913298 Emc6 "ER membrane protein complex subunit 6" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTY 111
              S   +   G +GGL ++VLFWT+
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTF 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=ISO

RGD|1309231 Emc6 "ER membrane protein complex subunit 6" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTY 111
              S   +   G +GGL ++VLFWT+
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTF 102

GO:0016021 "integral to membrane" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=IEA;ISO

UNIPROTKB|F1N0Z5 EMC6 "ER membrane protein complex subunit 6" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTY 111
              S   +   G +GGL ++VLFWT+
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTF 102

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|E2R7Q9 EMC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTY 111
              S   +   G +GGL ++VLFWT+
Sbjct:    79 KSRRPLFTGGLVGGLFTYVLFWTF 102

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|F1RHE3 EMC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)

Query:    28 LQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYF 87
             ++ N  V+ Y RT +S + G  AGILG TGL GF+FY L   + S+ L+ KA    + YF
Sbjct:    19 VRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAGRRWNKYF 78

Query:    88 DSWNRILLDGFLGGLMSFVLFWTY 111
              S   +   G +GGL ++VLFWT+
Sbjct:    79 KSRRPLFTGGLIGGLFTYVLFWTF 102

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q6GLC5 emc6 "ER membrane protein complex subunit 6" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 36/91 (39%), Positives = 53/91 (58%)

Query:    21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAK 80
             Q  +   ++ N  V+ Y RT +S + G  AGILG T L GF+FYFL   + S+ L+ K+ 
Sbjct:    12 QFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSG 71

Query:    81 FSVHSYFDSWNRILLDGFLGGLMSFVLFWTY 111
                + YF S   +   G +GGL ++VLFWT+
Sbjct:    72 RKWNKYFKSRKPLFTGGLIGGLFTYVLFWTF 102

GO:0016021 "integral to membrane" evidence=ISS

GO:0072546 "ER membrane protein complex" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GLC5	EMC6_XENTR	No assigned EC number	0.3956	0.8053	0.8272	yes	no
Q6P0F0	EMC6_DANRE	No assigned EC number	0.4	0.8849	0.9090	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_X1337 hypothetical protein (117 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	113
pfam07019	81	pfam07019, Rab5ip, Rab5-interacting protein (Rab5i	2e-23

>gnl|CDD|148567 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip)

 Score = 85.7 bits (213), Expect = 2e-23
 Identities = 37/80 (46%), Positives = 47/80 (58%)

Query: 33  KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNR 92
            V+Y+ R  +S++ GVIAGILG TG +GF+FYFLI   TS    AK       YF     
Sbjct: 1   DVLYWVRQVISLLAGVIAGILGLTGFLGFIFYFLISLGTSYLYYAKVGKIDEEYFGGRWE 60

Query: 93  ILLDGFLGGLMSFVLFWTYF 112
           +  +G L GL +FVL WT F
Sbjct: 61  LFTEGLLTGLATFVLTWTLF 80

This family consists of several Rab5-interacting protein (RIP5 or Rab5ip) sequences. The ras-related GTPase rab5 is rate-limiting for homotypic early endosome fusion. Rab5ip represents a novel rab5 interacting protein that may function on endocytic vesicles as a receptor for rab5-GDP and participate in the activation of rab5. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG4455	110	consensus Uncharacterized conserved protein [Funct	99.97
PF07019	81	Rab5ip: Rab5-interacting protein (Rab5ip)	99.95
KOG3415	129	consensus Putative Rab5-interacting protein [Intra	99.82
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.98

>KOG4455 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=4.4e-31  Score=180.90  Aligned_cols=100  Identities=42%  Similarity=0.717  Sum_probs=94.1

Q ss_pred             CCCCCCcccccchHHHhhchhHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhcCccccccccchh
Q 033706           13 SNDVSNDLQIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNR   92 (113)
Q Consensus        13 ~~~~~~~~~~~~~~~i~~N~~~i~~~r~~~sll~Gi~aGILgLtg~~Gf~fy~~~~~~~s~l~~~k~~~~~~~yF~~~~~   92 (113)
                      ..+++.+.+.++.+|++.|.++++++|+.+|+++|++||||||||+.||++|+++..+.+.++..|+++++.+||+++.+
T Consensus         4 s~~~~~~~~~~s~aav~nN~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s~~~   83 (110)
T KOG4455|consen    4 SKAEEVFIPIYSTAAVRNNKKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQSRRN   83 (110)
T ss_pred             chhhhcCCcchhHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCchhH
Confidence            44556677999999999999999999999999999999999999999999999998888888888999999999999999


Q ss_pred             HhhhhhhhhhHHHHhHhhhc
Q 033706           93 ILLDGFLGGLMSFVLFWTYF  112 (113)
Q Consensus        93 i~~~g~~~~l~~FvL~Wtl~  112 (113)
                      +|++++++++++|||+||+.
T Consensus        84 ~f~~~f~~Gl~tyVl~Wtf~  103 (110)
T KOG4455|consen   84 LFTESFLGGLTTYVLAWTFF  103 (110)
T ss_pred             HHHHHHhchHHHHHHHHHHH
Confidence            99999999999999999985

>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)

Probab=99.95  E-value=3.2e-28  Score=159.74  Aligned_cols=80  Identities=46%  Similarity=0.920  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhcCccccccccchhHhhhhhhhhhHHHHhHhhhc
Q 033706           33 KVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTYF  112 (113)
Q Consensus        33 ~~i~~~r~~~sll~Gi~aGILgLtg~~Gf~fy~~~~~~~s~l~~~k~~~~~~~yF~~~~~i~~~g~~~~l~~FvL~Wtl~  112 (113)
                      |+++|+||++|+++|++||||||||+.||++|++++.+++++++.|.++++++||++++|+++||+++++++|||+||++
T Consensus         1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~   80 (81)
T PF07019_consen    1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF   80 (81)
T ss_pred             CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999986

>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.8e-20  Score=128.28  Aligned_cols=81  Identities=26%  Similarity=0.497  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhcCccccccccchhHhhhhhhhhhHHHHhHhhh
Q 033706           32 MKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFDSWNRILLDGFLGGLMSFVLFWTY  111 (113)
Q Consensus        32 ~~~i~~~r~~~sll~Gi~aGILgLtg~~Gf~fy~~~~~~~s~l~~~k~~~~~~~yF~~~~~i~~~g~~~~l~~FvL~Wtl  111 (113)
                      +|++||.||+++++.|+++||++|+|..|++.|+..+..+.++|+.+..+.+++.|.+.+++.+||+++++++|++.|++
T Consensus        42 lDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~kEGf~asfa~FlvtWIi  121 (129)
T KOG3415|consen   42 LDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELLKEGFMASFALFLVTWII  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999998888899999999999999999999999999997


Q ss_pred             c
Q 033706          112 F  112 (113)
Q Consensus       112 ~  112 (113)
                      +
T Consensus       122 ~  122 (129)
T KOG3415|consen  122 F  122 (129)
T ss_pred             H
Confidence            5

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.98  E-value=1.5  Score=30.93  Aligned_cols=14  Identities=50%  Similarity=0.975  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhhhc
Q 033706           41 FLSIIGGVIAGILG   54 (113)
Q Consensus        41 ~~sll~Gi~aGILg   54 (113)
                      ++.+++|++|||+|
T Consensus        66 i~~Ii~gv~aGvIg   79 (122)
T PF01102_consen   66 IIGIIFGVMAGVIG   79 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHH
Confidence            58899999999987

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00