Citrus Sinensis ID: 033727

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNSNQLQHQVLYMRRSLfdqgyldseqliqledlqddanpnFVEEVVSLFYSDSARLIQNIEQtlsnrpvdfsrlDDILHQFkgscssigakKVKDACSQFREYCNAGNAEG
Flexible Loop (DISEMBL)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFkgscssigaKKVKDACSQFREYCNAGNAEG
Low Complexity Region (SEG)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG
Disordered region (IsUnstruct)
********QVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC*******
Disordered Region (DISOPRED)
*********VLYMRRSLFDQGYLDSEQLIQLEDLQD**NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFRE**N******
Disordered Region (DISEMBL)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG
Disordered Region (DISPRO)
*NSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q9LU15	127	Histidine-containing phos	no	no	0.821	0.724	0.677	4e-31
Q9ZNV8	156	Histidine-containing phos	no	no	0.955	0.685	0.486	3e-21
Q8L9T7	157	Histidine-containing phos	no	no	0.946	0.675	0.472	2e-19
Q9SAZ5	155	Histidine-containing phos	no	no	0.955	0.690	0.440	3e-18
Q6VAK4	149	Histidine-containing phos	no	no	0.991	0.744	0.424	6e-18
Q9ZNV9	154	Histidine-containing phos	no	no	0.866	0.629	0.459	2e-17
Q9SSC9	154	Histidine-containing phos	no	no	0.991	0.720	0.353	2e-05

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score =  132 bits (333), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 74/93 (79%), Gaps = 1/93 (1%)

Query: 20  QGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDIL 79
           QGYLD EQ ++LE+LQDDANPNFVEEV +L++ DSARLI NI+Q L     DF+RLD  +
Sbjct: 9   QGYLD-EQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYM 67

Query: 80  HQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           HQFKGS +SIGA KVK  C+ FREYC AGNAEG
Sbjct: 68  HQFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 2/109 (1%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
           QLQ Q      SL+ QG+LD +Q  +L+ LQDD +P+FV EV+SLF+ D  +LI N+ + 
Sbjct: 7   QLQRQFRDYTISLYQQGFLD-DQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65

Query: 65  L-SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           L +   VDFS++   +HQ KGS SS+GAK+VK  C  F+E C A N EG
Sbjct: 66  LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 4/110 (3%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
           QLQ Q      SL+ QG+LD+ Q  +L  LQD+  P+FV EVVSLF+ D ++LI  +  +
Sbjct: 8   QLQRQFQDYIVSLYQQGFLDN-QFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66

Query: 65  LSNRP--VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           L  RP  VDF ++D  +HQ KGS SS+GA++VK+ C  F+E C+  N EG
Sbjct: 67  LE-RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 2/109 (1%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
           QLQ +      SL+ QG+LD +Q  +L+ LQD+ +P+FV EVV+LF+ D  +LI N+ + 
Sbjct: 7   QLQRRFCDFTISLYHQGFLD-DQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARA 65

Query: 65  LSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           L     VDF  +   +HQ KGS SS+GAK+VK  C   +E C++ N EG
Sbjct: 66  LDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQ 59
           M +  L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I 
Sbjct: 1   MAAAALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIIN 59

Query: 60  NIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
            I   L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +G
Sbjct: 60  EIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 68/98 (69%), Gaps = 1/98 (1%)

Query: 15  RSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSR 74
           +SLF +G LDS+ L   +  QD++NP+FV +VV+LF+ DS R++ ++  +L  + VDF +
Sbjct: 15  KSLFLEGILDSQFLQLQQL-QDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKK 73

Query: 75  LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           +D  +HQ KGS SSIGA++VK+AC  FR +C   N E 
Sbjct: 74  VDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 111

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           +  ++LQ  +  +  SLF QG +  EQ +QL+ LQD+ +PNFV +V+++++ +S +L++N
Sbjct: 4   LGVDRLQADINRLLASLFHQG-VLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRN 62

Query: 61  IEQTLSNRPV-DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           +   L +R   D+ ++   L+Q  GS SSIGA++V++ C  FR      N  G
Sbjct: 63  LRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
359475915	161	PREDICTED: histidine-containing phosphot	0.991	0.689	0.758	1e-43
147818916	144	hypothetical protein VITISV_008201 [Viti	0.991	0.770	0.758	2e-43
255550962	169	Histidine-containing phosphotransfer pro	0.991	0.656	0.75	8e-43
298103710	137	putative histidine phosphotransfer prote	0.991	0.810	0.725	4e-40
224092264	147	histidine phosphotransfer protein [Popul	0.991	0.755	0.734	5e-40
224142940	137	histidine phosphotransfer protein [Popul	0.991	0.810	0.725	2e-39
449515458	137	PREDICTED: histidine-containing phosphot	1.0	0.817	0.678	2e-39
449461335	144	PREDICTED: histidine-containing phosphot	1.0	0.777	0.678	2e-39
298103702	147	putative histidine phosphotransfer prote	0.991	0.755	0.716	9e-39
391349165	150	histidine phosphotransfer protein [Popul	0.991	0.74	0.705	5e-38

>gi|359475915|ref|XP_002277778.2| PREDICTED: histidine-containing phosphotransfer protein 4-like [Vitis vinifera]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M  N LQ QV YMRRSLFDQGYLD EQ +QLEDLQDDANPNFVEE+V+LFY+DSARLI N
Sbjct: 1   MERNPLQRQVAYMRRSLFDQGYLD-EQFVQLEDLQDDANPNFVEEIVTLFYTDSARLIHN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQ L +RP+DF RLDD +HQFKGS SSIGAKKVK+ C+QFRE+C+A +AEG
Sbjct: 60  IEQALESRPLDFIRLDDYMHQFKGSSSSIGAKKVKNECTQFREHCSARSAEG 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818916|emb|CAN69375.1| hypothetical protein VITISV_008201 [Vitis vinifera] gi|296081566|emb|CBI20571.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M  N LQ QV YMRRSLFDQGYLD EQ +QLEDLQDDANPNFVEE+V+LFY+DSARLI N
Sbjct: 1   MERNPLQRQVAYMRRSLFDQGYLD-EQFVQLEDLQDDANPNFVEEIVTLFYTDSARLIHN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQ L +RP+DF RLDD +HQFKGS SSIGAKKVK+ C+QFRE+C+A +AEG
Sbjct: 60  IEQALESRPLDFIRLDDYMHQFKGSSSSIGAKKVKNECTQFREHCSARSAEG 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550962|ref|XP_002516529.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223544349|gb|EEF45870.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  177 bits (448), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 94/112 (83%), Gaps = 1/112 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+   L HQ+ YMR+SLFDQGYLD +Q +QLEDLQDDANPNFVEE+V+ FY DSARLIQN
Sbjct: 1   MDRKHLHHQIGYMRKSLFDQGYLD-DQFMQLEDLQDDANPNFVEEIVTSFYGDSARLIQN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQ L NRPVDF +LDD +HQFKGS SSIGAKKVK  C+QFREYC AGN EG
Sbjct: 60  IEQALVNRPVDFGKLDDYMHQFKGSSSSIGAKKVKMECTQFREYCCAGNIEG 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103710|emb|CBM42556.1| putative histidine phosphotransfer protein 8 [Populus x canadensis]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 94/113 (83%), Gaps = 2/113 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+  QLQHQV YMR+SLFDQGYLD +Q  QLEDLQD+ANPNFVEEVV+LFYSDSAR IQN
Sbjct: 1   MDRKQLQHQVAYMRKSLFDQGYLD-DQFNQLEDLQDEANPNFVEEVVTLFYSDSARFIQN 59

Query: 61  IEQTLSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQ +  +P +DF +LDD +HQFKGS SS GAKK+K  CSQFRE C+AGN EG
Sbjct: 60  IEQAMIKKPNIDFGKLDDYMHQFKGSSSSFGAKKMKKECSQFRECCSAGNIEG 112

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092264|ref|XP_002309533.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222855509|gb|EEE93056.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 92/113 (81%), Gaps = 2/113 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+  QLQHQV   RRSLFDQGYLD +Q IQLE LQD+ANPNFVEEVV LFYSDS RLIQN
Sbjct: 1   MDRKQLQHQVASTRRSLFDQGYLD-DQFIQLEHLQDEANPNFVEEVVRLFYSDSVRLIQN 59

Query: 61  IEQTLSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQ + N+P +DF +LDD +HQFKGS SSIGAKKV   CS+FREYC AGN EG
Sbjct: 60  IEQAMINKPNIDFGKLDDYMHQFKGSSSSIGAKKVMKECSKFREYCYAGNIEG 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142940|ref|XP_002324788.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222866222|gb|EEF03353.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 93/113 (82%), Gaps = 2/113 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+  QLQHQV  MR+SLFDQGYLD +Q  QLEDLQD+ANPNFVEEVV+LFYSDSAR IQN
Sbjct: 1   MDRKQLQHQVASMRKSLFDQGYLD-DQFNQLEDLQDEANPNFVEEVVTLFYSDSARFIQN 59

Query: 61  IEQTLSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQ +  +P +DF +LDD +HQFKGS SS GAKKVK  CSQFRE C+AGN EG
Sbjct: 60  IEQAMIKKPNIDFGKLDDYMHQFKGSSSSFGAKKVKKECSQFRECCSAGNIEG 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515458|ref|XP_004164766.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 93/112 (83%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+SN L  QV Y +R LF+QGYLD +Q  QLE+LQDD NPNF EE+VSLFY+DSARLI++
Sbjct: 1   MDSNLLHRQVAYTKRCLFEQGYLDRDQFTQLEELQDDTNPNFAEEIVSLFYNDSARLIRS 60

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQT++++P DF +LD+ +HQFKGS SSIGA +V DACSQFREYC AGN EG
Sbjct: 61  IEQTMASKPTDFEKLDNDMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEG 112

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461335|ref|XP_004148397.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 93/112 (83%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+SN L  QV Y +R LF+QGYLD +Q  QLE+LQDD NPNF EE+VSLFY+DSARLI++
Sbjct: 1   MDSNLLHRQVAYTKRCLFEQGYLDRDQFTQLEELQDDTNPNFAEEIVSLFYNDSARLIRS 60

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQT++++P DF +LD+ +HQFKGS SSIGA +V DACSQFREYC AGN EG
Sbjct: 61  IEQTMASKPTDFEKLDNDMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEG 112

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103702|emb|CBM42552.1| putative histidine phosphotransfer protein 10 [Populus x canadensis]

 Score =  163 bits (413), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 91/113 (80%), Gaps = 2/113 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+  QLQHQV   RRSLFDQGYLD +Q IQ+E LQD+ANPNFVEEVV LFYSDS RLIQN
Sbjct: 1   MDRKQLQHQVASTRRSLFDQGYLD-DQFIQIEHLQDEANPNFVEEVVRLFYSDSVRLIQN 59

Query: 61  IEQTLSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IEQ + N+  +DF +LDD +HQFKGS SSIGAKKV   CS+FREYC AGN EG
Sbjct: 60  IEQAMINKSNIDFGKLDDYMHQFKGSSSSIGAKKVMKECSKFREYCYAGNIEG 112

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391349165|emb|CCI55474.1| histidine phosphotransfer protein [Populus x canadensis]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 89/112 (79%), Gaps = 1/112 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M  NQL+ QV   R+SLFDQG+LD EQ IQLE+LQDDANPNFVEEVVSL Y DSARLI N
Sbjct: 1   MERNQLRRQVALTRQSLFDQGFLD-EQFIQLEELQDDANPNFVEEVVSLHYRDSARLISN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           IE+ L   P+DF++LD  +HQFKGS SSIGAKKVK  C+ FREYC AGN EG
Sbjct: 60  IEKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEG 111

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.982	0.714	0.459	5.5e-22
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.955	0.685	0.486	1.5e-21
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.946	0.675	0.472	2.1e-20
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.955	0.690	0.440	5.1e-19
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.964	0.701	0.381	1.4e-16
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.482	0.323	0.456	6.8e-08
UNIPROTKB|G4MTL0	135	MGG_07173 "Uncharacterized pro	0.741	0.614	0.275	3.8e-07
ASPGD|ASPL0000046660	172	ypdA [Emericella nidulans (tax	0.839	0.546	0.295	6.1e-07
UNIPROTKB|Q884X1	118	PSPTO_1965 "Hpt domain protein	0.696	0.661	0.268	5e-05
POMBASE|SPBC725.02	295	mpr1 "histidine-containing res	0.821	0.311	0.223	0.00015

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 51/111 (45%), Positives = 76/111 (68%)

Query:     1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
             M+  Q Q  +    +SLF +G LDS Q +QL+ LQD++NP+FV +VV+LF+ DS R++ +
Sbjct:     1 MDLVQKQKSLQDYTKSLFLEGILDS-QFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59

Query:    61 IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAE 111
             +  +L  + VDF ++D  +HQ KGS SSIGA++VK+AC  FR +C   N E
Sbjct:    60 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVE 110

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 53/109 (48%), Positives = 71/109 (65%)

Query:     5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
             QLQ Q      SL+ QG+LD +Q  +L+ LQDD +P+FV EV+SLF+ D  +LI N+ + 
Sbjct:     7 QLQRQFRDYTISLYQQGFLD-DQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65

Query:    65 LSNR-PVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
             L     VDFS++   +HQ KGS SS+GAK+VK  C  F+E C A N EG
Sbjct:    66 LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 52/110 (47%), Positives = 72/110 (65%)

Query:     5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
             QLQ Q      SL+ QG+LD+ Q  +L  LQD+  P+FV EVVSLF+ D ++LI  +  +
Sbjct:     8 QLQRQFQDYIVSLYQQGFLDN-QFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66

Query:    65 LSNRP--VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
             L  RP  VDF ++D  +HQ KGS SS+GA++VK+ C  F+E C+  N EG
Sbjct:    67 LE-RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/109 (44%), Positives = 69/109 (63%)

Query:     5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
             QLQ +      SL+ QG+LD +Q  +L+ LQD+ +P+FV EVV+LF+ D  +LI N+ + 
Sbjct:     7 QLQRRFCDFTISLYHQGFLD-DQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARA 65

Query:    65 LSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
             L     VDF  +   +HQ KGS SS+GAK+VK  C   +E C++ N EG
Sbjct:    66 LDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/110 (38%), Positives = 70/110 (63%)

Query:     4 NQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63
             ++LQ  +  +  SLF QG LD EQ +QL+ LQD+ +PNFV +V+++++ +S +L++N+  
Sbjct:     7 DRLQADINRLLASLFHQGVLD-EQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65

Query:    64 TLSNRPV-DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
              L +R   D+ ++   L+Q  GS SSIGA++V++ C  FR      N  G
Sbjct:    66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query:    21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTL--SNRPVDFSRL 75
             G+LD +Q  +L+ LQDD +P+FV EV+SLF+ D  +LI N+ + L  S   VDF ++
Sbjct:    24 GFLD-DQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQM 79

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

UNIPROTKB|G4MTL0 MGG_07173 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/87 (27%), Positives = 49/87 (56%)

Query:    26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGS 85
             EQ++++++  D+A  +F + +V  F+  +    + +++ L +R  D   L  + H  KGS
Sbjct:    14 EQILEMDE--DEAERDFSKPLVMGFFEQAEETFEKMDKALKDR--DLKELSSLGHFLKGS 69

Query:    86 CSSIGAKKVKDACSQFREYCNAGNAEG 112
              +++G  KVKD+C   ++Y N    +G
Sbjct:    70 SATLGFTKVKDSCQVIQQYGNKLKLDG 96

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000046660 ypdA [Emericella nidulans (taxid:162425)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query:    15 RSLFDQG-YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFS 73
             R+L D    +D     Q+ ++ D+    F + +V  F+  +      +E+ L ++ +  S
Sbjct:    21 RTLADMADSIDQATFEQILEMDDEDEHEFSQGIVYGFFDQAESTFDKMEKALEDKKL--S 78

Query:    74 RLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAE 111
              L  + H  KGS ++IG  KVKDAC + + Y  AG  E
Sbjct:    79 ELSSLGHFLKGSSATIGLTKVKDACEKIQHY-GAGKDE 115

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q884X1 PSPTO_1965 "Hpt domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 22/82 (26%), Positives = 39/82 (47%)

Query:    22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ 81
             +LD   L  L+++ +D  P  ++    +F  DS + +  +   +    +D   L    H 
Sbjct:     4 HLDYSVLSALQEVMEDEYPTLLD----VFLKDSEQRLAQLRLAVETGNLDLQELSLTAHS 59

Query:    82 FKGSCSSIGAKKVKDACSQFRE 103
             FKGS S++GA ++   C Q  E
Sbjct:    60 FKGSSSNMGALQLSQLCHQLEE 81

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC725.02 mpr1 "histidine-containing response regulator phosphotransferase Mpr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 21/94 (22%), Positives = 46/94 (48%)

Query:    19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDI 78
             D+  +D     QL ++ DD    F + +V  ++  +   I ++++ L  +  D  +L  +
Sbjct:   162 DKQLIDHSVFDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK--DLKKLSSL 219

Query:    79 LHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
              H  KGS + +G  K++  C + + Y +  + +G
Sbjct:   220 GHFLKGSSAVLGLTKMRKVCERIQNYGSLRSRDG 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.46    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  113 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.98u 0.11s 14.09t   Elapsed:  00:00:01
  Total cpu time:  13.98u 0.11s 14.09t   Elapsed:  00:00:01
  Start:  Mon May 20 14:56:51 2013   End:  Mon May 20 14:56:52 2013

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032096001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (156 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam01627	87	pfam01627, Hpt, Hpt domain	4e-09
cd00088	94	cd00088, HPT, Histidine Phosphotransfer domain, in	9e-08
TIGR02956	968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	4e-05
COG2198	122	COG2198, ArcB, FOG: HPt domain [Signal transductio	8e-05

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 45  EVVSLFYSDSARLIQNIEQTL-SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFRE 103
           E++ LF  ++  L++ +EQ L +    D   L    H  KGS  S+G   + +   +  +
Sbjct: 1   ELLELFLEEAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAELAHELED 60

Query: 104 YCNAGNAEG 112
              AG    
Sbjct: 61  LLRAGRDGE 69

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

 Score = 45.8 bits (109), Expect = 9e-08
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 43  VEEVVSLFYSDSARLIQNIEQTL--SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ 100
           +EE++ LF  ++  L++ +E+ L       D + +    H  KGS +S+G +++     Q
Sbjct: 1   MEELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQ 60

Query: 101 FREYCNAGN 109
             +  +A  
Sbjct: 61  LEDLLDALR 69

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94

>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 20  QGYLDSEQLIQLEDLQDDAN---PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLD 76
           +    SE L+  E LQ D        V ++V+LF + SA  ++ +    +    D +++ 
Sbjct: 855 ESNQASEFLLDEEQLQQDIEVLGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIK 912

Query: 77  DILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
            + H+ KGS  S+G  ++   C Q  +    G  E 
Sbjct: 913 KLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGALEL 948

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968

>gnl|CDD|225108 COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]

 Score = 38.6 bits (90), Expect = 8e-05
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 32  EDLQDDAN-PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIG 90
             ++     P+ + E++++F  ++   ++ +E  L+    D   L  + H+ KGS +S+G
Sbjct: 13  LLVRLIGGDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLG 70

Query: 91  AKKVKDACSQF 101
              +   C Q 
Sbjct: 71  LPALAQLCQQL 81

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG4747	150	consensus Two-component phosphorelay intermediate	99.71
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.65
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.6
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.52
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.48
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.32
PRK10618	894	phosphotransfer intermediate protein in two-compon	99.01
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.85
PRK11091	779	aerobic respiration control sensor protein ArcB; P	98.81
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.54
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	98.47
PRK10547	670	chemotaxis protein CheA; Provisional	98.47
PRK09959	1197	hybrid sensory histidine kinase in two-component r	97.49
PRK15347	921	two component system sensor kinase SsrA; Provision	97.21
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	88.59
cd08323	86	CARD_APAF1 Caspase activation and recruitment doma	85.99
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	82.49

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.71  E-value=6e-17  Score=110.30  Aligned_cols=106  Identities=55%  Similarity=0.901  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhh
Q 033727            5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG   84 (112)
Q Consensus         5 ~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG   84 (112)
                      .++.....|..|++.++++| ++|.+|+++.++..|.|+.+++..|++++.+.+..++.|+..+. |+..+....|.+||
T Consensus         7 ~~q~~~~d~~~sl~~qgild-~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlkg   84 (150)
T KOG4747|consen    7 SMQRDVSDYTKSLFDQGILD-SQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLKG   84 (150)
T ss_pred             HHHHHHHHHHHHHHHHHhhH-HHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHccC
Confidence            57788899999999999999 99999999999999999999999999999999999999988753 99999999999999


Q ss_pred             hhhhhcHHHHHHHHHHHHHHHHccCCCC
Q 033727           85 SCSSIGAKKVKDACSQFREYCNAGNAEG  112 (112)
Q Consensus        85 sa~~lGa~~l~~~~~~lE~~~~~~~~~g  112 (112)
                      |+.++||.++...|..+...|+.++.+|
T Consensus        85 ssssIGa~kvk~~c~~~~~~~~~~n~eg  112 (150)
T KOG4747|consen   85 SSSSIGALKVKKVCVGFNEFCEAGNIEG  112 (150)
T ss_pred             chhhhhHHHHHHHHHHHHHHHhhccchh
Confidence            9999999999999999999999999886

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.65  E-value=2.2e-15  Score=100.01  Aligned_cols=78  Identities=23%  Similarity=0.516  Sum_probs=71.1

Q ss_pred             HHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHc
Q 033727           28 LIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNA  107 (112)
Q Consensus        28 l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~  107 (112)
                      +..+..+.+ +.++++.+++..|+++.+..+..++.++..+  |+..+.+.||+|||+|+++|+.+|+.+|+++|..++.
T Consensus        11 ~~~~~~~~g-~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~--d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~   87 (122)
T COG2198          11 IELLVRLIG-GDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRS   87 (122)
T ss_pred             HHHHHHHcC-CChHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHc
Confidence            455555542 4799999999999999999999999999999  9999999999999999999999999999999999988


Q ss_pred             c
Q 033727          108 G  108 (112)
Q Consensus       108 ~  108 (112)
                      +
T Consensus        88 ~   88 (122)
T COG2198          88 G   88 (122)
T ss_pred             C
Confidence            4

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.60  E-value=3.3e-15  Score=92.78  Aligned_cols=64  Identities=23%  Similarity=0.555  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---hCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccCC
Q 033727           45 EVVSLFYSDSARLIQNIEQTL---SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNA  110 (112)
Q Consensus        45 eli~~F~~~~~~~l~~L~~a~---~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~~  110 (112)
                      +++..|+++.++.+..|++++   ..+  |+..+.+.+|+|||+++++|+.+++.+|..+|+.++.++.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~~--d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~   67 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQE--DWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDK   67 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHHC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCc
Confidence            589999999999999999999   888  9999999999999999999999999999999999998764

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.52  E-value=3.2e-14  Score=88.57  Aligned_cols=63  Identities=22%  Similarity=0.416  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccC
Q 033727           45 EVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN  109 (112)
Q Consensus        45 eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~  109 (112)
                      +++..|+++.+..+..|.+++..+  |+..+.+.+|+|||+|+++|+..|..+|..+|..++...
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~~~--~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~   64 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALDAQ--DVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAAR   64 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCHh--HHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999888  999999999999999999999999999999999888643

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.48  E-value=1.6e-13  Score=86.89  Aligned_cols=64  Identities=25%  Similarity=0.494  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----CCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccC
Q 033727           44 EEVVSLFYSDSARLIQNIEQTLS----NRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN  109 (112)
Q Consensus        44 ~eli~~F~~~~~~~l~~L~~a~~----~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~  109 (112)
                      .+++..|+++.++.+..|.+++.    ..  |+..+.+.+|+|||+++++|+.++..+|..+|.+++.+.
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~--d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~   69 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAE--DLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALR   69 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999998    77  999999999999999999999999999999999998764

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.32  E-value=3.1e-11  Score=101.55  Aligned_cols=85  Identities=27%  Similarity=0.441  Sum_probs=75.1

Q ss_pred             CCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHH
Q 033727           22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQF  101 (112)
Q Consensus        22 ~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~l  101 (112)
                      ++|...+.......   +++.+.+++..|+++.+..+..|..++..+  |+..+++.+|+|||+++++|+.++..+|..|
T Consensus       863 ll~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~--d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~l  937 (968)
T TIGR02956       863 LLDEEQLQQDIEVL---GVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIKKLAHKLKGSAGSLGLTQLTQLCQQL  937 (968)
T ss_pred             hcCHHHHHHHHHhc---CcHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            66655555443333   678899999999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHHHccCCC
Q 033727          102 REYCNAGNAE  111 (112)
Q Consensus       102 E~~~~~~~~~  111 (112)
                      |+.++.|+..
T Consensus       938 e~~~~~~~~~  947 (968)
T TIGR02956       938 EKQGKTGALE  947 (968)
T ss_pred             HHhcccCCcc
Confidence            9999988753

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=99.01  E-value=1.1e-09  Score=93.08  Aligned_cols=64  Identities=16%  Similarity=0.308  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccCC
Q 033727           45 EVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNA  110 (112)
Q Consensus        45 eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~~  110 (112)
                      .+...|++..+..+..|..++..+  |+..+.+.||+|||+++++|+..++++|..||+.++.++.
T Consensus       811 ~~~~lF~~t~~~di~~L~~~~~~~--D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~  874 (894)
T PRK10618        811 DYYALFVDTVPDDVKRLYTEAATS--DFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDE  874 (894)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCh
Confidence            456899999999999999999999  9999999999999999999999999999999999998875

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.85  E-value=4.3e-08  Score=82.46  Aligned_cols=99  Identities=23%  Similarity=0.346  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHhccc-CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 033727            3 SNQLQHQVLYMRRSLF-DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ   81 (112)
Q Consensus         3 ~~~l~~~~~~~~~~~~-~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (112)
                      .+.|...+..++.... ....++...+.......   ++..+.+++..|.++....+..++.+...+  |+..++++||+
T Consensus       787 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ah~  861 (914)
T PRK11466        787 REVLGQLLAHYLQLQVNNDQPLDVSQLNEDAALM---GTEKIHEWLALFKQHALPLLDEIDIARASQ--DSEKIKRAAHQ  861 (914)
T ss_pred             HHHHHHHHHHHhhhccccccCCCHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence            3455555555554311 12334544444333222   567788999999999999999999999999  99999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHHHH
Q 033727           82 FKGSCSSIGAKKVKDACSQFREYCN  106 (112)
Q Consensus        82 LKGsa~~lGa~~l~~~~~~lE~~~~  106 (112)
                      |||+++++|+..+..+|.++|..+.
T Consensus       862 lkg~~~~lg~~~l~~~~~~le~~~~  886 (914)
T PRK11466        862 LKSSCSSLGMRQASQACAQLEQQPL  886 (914)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999998653

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=98.81  E-value=6.4e-08  Score=80.46  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=81.6

Q ss_pred             ChHHHHHHHHHHHhccc--------------CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 033727            2 NSNQLQHQVLYMRRSLF--------------DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSN   67 (112)
Q Consensus         2 ~~~~l~~~~~~~~~~~~--------------~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~   67 (112)
                      +.+.|...+..++....              ...++|.+.+..+.+..   ++..+.+.+..|.+..+..+..|..++..
T Consensus       631 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---g~~~~~~~l~~~~~~~~~~~~~l~~~l~~  707 (779)
T PRK11091        631 SVPALTAMIKKFWDTQDDEESTVTTEESSKANEALLDIPMLEQYVELV---GPKLITDSLAVFEKMMPGYLSVLDSNLTA  707 (779)
T ss_pred             CHHHHHHHHHHHhcccccccccccccccccccccccCHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHHHHHHHHC
Confidence            34566666666663321              12356666556555544   56778889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccC
Q 033727           68 RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN  109 (112)
Q Consensus        68 ~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~  109 (112)
                      +  |+..+...+|+|||+++++|+..++.+|..+|.....+.
T Consensus       708 ~--d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~  747 (779)
T PRK11091        708 R--DQKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAW  747 (779)
T ss_pred             C--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCcccc
Confidence            9  999999999999999999999999999999997665543

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.54  E-value=2.2e-06  Score=71.94  Aligned_cols=69  Identities=22%  Similarity=0.510  Sum_probs=65.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccC
Q 033727           39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN  109 (112)
Q Consensus        39 ~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~  109 (112)
                      .+....+++..|.+..+.....|..++...  |+..+..++|++||+++++|+.++..+|..+|+.++.+.
T Consensus       822 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~  890 (919)
T PRK11107        822 KPDLARDMLQMLLDFLPEVRNKVEEALAGE--DPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGT  890 (919)
T ss_pred             CHHHHHHHHHHHHHhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence            678888999999999999999999999999  999999999999999999999999999999999998763

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.47  E-value=7.1e-07  Score=74.66  Aligned_cols=66  Identities=21%  Similarity=0.409  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCH---HHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 033727           40 PNFVEEVVSLFYSDSARLIQNIEQTL---SNRPVDF---SRLDDILHQFKGSCSSIGAKKVKDACSQFREYC  105 (112)
Q Consensus        40 ~~~~~eli~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~  105 (112)
                      +....++...|+.++++++..|.+.+   +..|.|.   ..+.+.||+|||+|+++|+..+..+|+.+|...
T Consensus         3 ~~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~l   74 (716)
T COG0643           3 SMDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLL   74 (716)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHH
Confidence            34567899999999999999999853   3333454   567899999999999999999999999999743

>PRK10547 chemotaxis protein CheA; Provisional

Probab=98.47  E-value=7.9e-07  Score=73.94  Aligned_cols=63  Identities=16%  Similarity=0.357  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---hhCCCCCH---HHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 033727           44 EEVVSLFYSDSARLIQNIEQT---LSNRPVDF---SRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN  106 (112)
Q Consensus        44 ~eli~~F~~~~~~~l~~L~~a---~~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~  106 (112)
                      .+++..|++++.+.++.|++.   +++.|.|.   ..+.+.+|+|||+|+.+|+..+..+|+.+|....
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld   72 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLD   72 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHH
Confidence            368999999999999999887   44444454   5678999999999999999999999999997653

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=97.49  E-value=0.0023  Score=55.78  Aligned_cols=68  Identities=12%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcc
Q 033727           39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAG  108 (112)
Q Consensus        39 ~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~  108 (112)
                      +...+.+++..+.......+..+..+...+  |...+...+|++||++..+|+..+...|.++|......
T Consensus      1098 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~ 1165 (1197)
T PRK09959       1098 DLQLMQEILMTFQHETHKDLPAAFHALEAG--DNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSD 1165 (1197)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcC
Confidence            567788899999999999998888899999  99999999999999999999999999999999877654

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=97.21  E-value=0.0018  Score=54.71  Aligned_cols=61  Identities=25%  Similarity=0.424  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccCC
Q 033727           46 VVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNA  110 (112)
Q Consensus        46 li~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~~  110 (112)
                      +...+.+.....+..+..++..+  |  .+.+++|++||+++.+|+.++...|.++|..++.+..
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~--~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~  898 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQ--E--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEI  898 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCH--H--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCC
Confidence            44555666677788888888877  6  8899999999999999999999999999999987653

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=88.59  E-value=3.7  Score=24.63  Aligned_cols=43  Identities=16%  Similarity=0.328  Sum_probs=35.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 033727           39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK   83 (112)
Q Consensus        39 ~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      +..-+.++....-......+..|..++...  ||..+...+++||
T Consensus        25 ~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~--d~~~A~~~~~kLk   67 (78)
T PF07743_consen   25 DEAELEELKKEIEERIKELIKELAEAFDAK--DWEEAKEALRKLK   67 (78)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cHHHHHHHHHHHH
Confidence            456677777777778888888999999999  9999999999986

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1

Probab=85.99  E-value=6.4  Score=24.60  Aligned_cols=67  Identities=10%  Similarity=0.227  Sum_probs=53.3

Q ss_pred             HHHHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 033727           10 VLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH   80 (112)
Q Consensus        10 ~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH   80 (112)
                      ....+..+..+++++.+..+.++...  ...+-...+|+....-.+.-...+..++...  .+..++.+.|
T Consensus        16 v~~ild~L~~~gvlt~~~~e~I~~~~--t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~--~~~~La~lL~   82 (86)
T cd08323          16 TSYIMDHMISDGVLTLDEEEKVKSKA--TQKEKAVMLINMILTKDNHAYVSFYNALLHE--GYKDLALLLH   82 (86)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CChHHHHHHh
Confidence            45577788899999988888888754  3567778899999999999999999998866  6777777665

Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=82.49  E-value=13  Score=25.56  Aligned_cols=43  Identities=12%  Similarity=0.131  Sum_probs=31.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 033727           39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK   83 (112)
Q Consensus        39 ~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      +.+-+..+....-.........|.++++.+  ||+.+...+.+||
T Consensus        98 d~~~L~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kLk  140 (157)
T TIGR00714        98 DEARLESFIKRVKKMFQTRHQLLVEQLDNQ--TWAAAADYTRKLR  140 (157)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            455556666666666666777788888888  9988888777765

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		1e-18
4euk_B	159	Crystal Structure Length = 159		2e-18
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		2e-18
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		2e-18

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 6   LQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQNIEQT 64
           L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I  I   
Sbjct: 6   LRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 65  LSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +G
Sbjct: 65  LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 68/98 (69%), Gaps = 1/98 (1%)
Query: 15  RSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSR 74
           +SLF +G LDS+ L   +  QD++NP+FV +VV+LF+ DS R++ ++  +L  + VDF +
Sbjct: 20  KSLFLEGILDSQFLQLQQL-QDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKK 78
Query: 75  LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           +D  +HQ KGS SSIGA++VK+AC  FR +C   N E 
Sbjct: 79  VDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 116

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQ 59
           M +  L+ Q+  +  S+F  G +D EQ  QL+ LQ+D   P FV EVV+LF  D+ R+I 
Sbjct: 1   MAAAALREQLNALLSSMFASGLVD-EQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIIS 59
Query: 60  NIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
            +   L    VDF ++D  +HQ KGS +S+GA+KVK  C QFR+ C   N +G
Sbjct: 60  ELAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDG 112

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M   Q++ Q +   +S+F +G+LD + L QL+ LQD+ NP FV EVVSLF+ DS R++++
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFL-QLQQLQDENNPEFVFEVVSLFFDDSERILKD 59
Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           +   +  + +DF ++D  +HQFKGS +SIGA++VK++C  FR +C   N + 
Sbjct: 60  LSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	2e-35
3us6_A	153	Histidine-containing phosphotransfer protein type	4e-35
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	3e-21
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	8e-12
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	2e-08
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	3e-07
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	5e-07
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	3e-06

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  117 bits (295), Expect = 2e-35
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 2/109 (1%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQNIEQ 63
            L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I  I  
Sbjct: 5   ALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIAT 63

Query: 64  TLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
            L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +G
Sbjct: 64  LLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  116 bits (293), Expect = 4e-35
 Identities = 47/112 (41%), Positives = 76/112 (67%), Gaps = 1/112 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M   Q++ Q +   +S+F +G+LD  Q +QL+ LQD+ NP FV EVVSLF+ DS R++++
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLD-GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKD 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           +   +  + +DF ++D  +HQFKGS +SIGA++VK++C  FR +C   N + 
Sbjct: 60  LSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 82.1 bits (202), Expect = 3e-21
 Identities = 15/97 (15%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 16  SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRL 75
           S      ++   L ++  + DD + +F + ++  F   +      +++ L     + + L
Sbjct: 2   STIPSEIINWTILNEIISMDDD-DSDFSKGLIIQFIDQAQTTFAQMQRQLDG-EKNLTEL 59

Query: 76  DDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           D++ H  KGS +++G +++   C + +          
Sbjct: 60  DNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFF 96

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 56.4 bits (136), Expect = 8e-12
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 8   HQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSN 67
           H   +M   + +Q         ++E+L  +   + V  ++ +F  +    I  + +   +
Sbjct: 2   HHHHHMNTDVLNQQ--------KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGS 53

Query: 68  RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
                  L +I H  K S +S GA ++ +      +   A   + 
Sbjct: 54  E--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQE 96

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 19  DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDI 78
            +  LD   L   E   +   P  + + +++F       +  +E  L+ +  D   + + 
Sbjct: 8   SEALLDIPML---EQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEE 62

Query: 79  LHQFKGSCSSIGAKKVKDACSQ 100
            H+ KG+  S+G + ++    Q
Sbjct: 63  GHKIKGAAGSVGLRHLQQLGQQ 84

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 18  FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDD 77
           FD   L+ +  +     Q +   N   E++ +        ++ I+  L     D + +  
Sbjct: 1   FDLHTLNWDLCLT----QANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLS 54

Query: 78  ILHQFKGSCSSIGAKKVKDACSQ 100
            +H+  G+    G    +  C +
Sbjct: 55  TIHKLHGASCYCGVPTTQRLCQE 77

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli} Length = 123

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 39  NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98
             +   +++ +       +   +E+ L     +   L D++H+  GSC   G  ++K+ C
Sbjct: 27  KTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLC 84

Query: 99  SQF 101
              
Sbjct: 85  QLI 87

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Length = 113

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 39  NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98
           +   V+EV++LF   +A     ++              D +H  KG+   +GA  + + C
Sbjct: 23  DFAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVHTVKGAARGVGAFNLGEVC 75

Query: 99  SQ 100
            +
Sbjct: 76  ER 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3us6_A	153	Histidine-containing phosphotransfer protein type	99.96
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	99.95
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.91
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.84
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.79
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.79
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.78
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.65
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.6
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.53
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.42
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.38
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.38
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	99.12
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.92
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	81.63

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=99.96  E-value=2.3e-29  Score=173.07  Aligned_cols=110  Identities=43%  Similarity=0.829  Sum_probs=104.8

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 033727            1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH   80 (112)
Q Consensus         1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH   80 (112)
                      |...+|+.++.+|+++++++++|| ++|.+|++|.++++|+|+.++|..|++++++.+..|+.+++.++.|+..+.+.||
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~g~LD-~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH   79 (153)
T 3us6_A            1 MEVGQMRRQWVDYIKSMFMEGFLD-GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH   79 (153)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTSCC-HHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccccchH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence            778899999999999999999999 8899999998888999999999999999999999999999987779999999999


Q ss_pred             hhhhhhhhhcHHHHHHHHHHHHHHHHccCCC
Q 033727           81 QFKGSCSSIGAKKVKDACSQFREYCNAGNAE  111 (112)
Q Consensus        81 ~LKGsa~~lGa~~l~~~~~~lE~~~~~~~~~  111 (112)
                      +|||||+|+||.+|+.+|.+||.+|+.|+.+
T Consensus        80 ~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~  110 (153)
T 3us6_A           80 QFKGSSASIGAQRVKNSCVAFRNFCEEQNID  110 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999864

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=99.95  E-value=1.3e-27  Score=163.34  Aligned_cols=108  Identities=41%  Similarity=0.733  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCHHHHHHHHccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 033727            3 SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDAN-PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ   81 (112)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~-~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (112)
                      ..+|+.|+..++++++++++||+. |.+|++|.++++ ++|+.++|..|++++++.+..|+.+++.+++|+..+.+.+|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~-~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~   81 (149)
T 1yvi_A            3 AAALRDQLTALLSSMFSQGLVDEQ-FQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHH-HHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccHH-HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            468999999999999999999987 999999966667 999999999999999999999999999875689999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHHHHccCCC
Q 033727           82 FKGSCSSIGAKKVKDACSQFREYCNAGNAE  111 (112)
Q Consensus        82 LKGsa~~lGa~~l~~~~~~lE~~~~~~~~~  111 (112)
                      |||||+|+||.+|+.+|.++|.+++.++.+
T Consensus        82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~  111 (149)
T 1yvi_A           82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRD  111 (149)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhHHHHHhHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999998754

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.91  E-value=7e-24  Score=147.25  Aligned_cols=91  Identities=16%  Similarity=0.389  Sum_probs=87.3

Q ss_pred             cccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHhhhhhhhhhcHHHH
Q 033727           16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLS-NRPVDFSRLDDILHQFKGSCSSIGAKKV   94 (112)
Q Consensus        16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~l   94 (112)
                      +|.++++||+.+|.+|+++.+++ |+|+.++|..|++++++.+..|++|++ .+  |+..+..++|+|||||+|+||.+|
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV   78 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI   78 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence            57788999999999999998766 999999999999999999999999999 77  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccC
Q 033727           95 KDACSQFREYCNAGN  109 (112)
Q Consensus        95 ~~~~~~lE~~~~~~~  109 (112)
                      +.+|.+||.+|+.++
T Consensus        79 ~~~C~~le~~~r~~n   93 (167)
T 2r25_A           79 AWVCERIQNLGRKME   93 (167)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999998

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.84  E-value=1.4e-21  Score=129.43  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             cccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 033727           16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVK   95 (112)
Q Consensus        16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~   95 (112)
                      .+.+.++||++.|.+|.++.   +++++.+++..|++++++.+..|+.++..+  |+..+.+.||+|||+|+++|+.+|+
T Consensus         5 ~~~~~~~lD~~~l~~l~~~~---g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~   79 (125)
T 2a0b_A            5 NSKSEALLDIPMLEQYLELV---GPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ   79 (125)
T ss_dssp             -CHHHHHSCHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccccCCHHHHHHHHHHh---CHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34556789999999998877   789999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCC
Q 033727           96 DACSQFREYCNAGNA  110 (112)
Q Consensus        96 ~~~~~lE~~~~~~~~  110 (112)
                      .+|+.+|..++.++.
T Consensus        80 ~~~~~lE~~~~~~~~   94 (125)
T 2a0b_A           80 QLGQQIQSPDLPAWE   94 (125)
T ss_dssp             HHHHHHTCTTSTTHH
T ss_pred             HHHHHHHHHHHcCCH
Confidence            999999998887653

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.79  E-value=3.2e-20  Score=122.70  Aligned_cols=88  Identities=16%  Similarity=0.297  Sum_probs=79.2

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 033727           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (112)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~   98 (112)
                      .-+.+|+.++.+|+...   +++++.+++..|++++++.+..|+++.+..  |+..+.+.+|+|||||+++|+.+|+.+|
T Consensus         8 ~~~~~d~~~l~~L~~~~---g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~   82 (120)
T 1y6d_A            8 NTDVLNQQKIEELSAEI---GSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERA   82 (120)
T ss_dssp             CCTTTTTTHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CCccccHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHH
Confidence            45788988888887655   689999999999999999999999987777  8888999999999999999999999999


Q ss_pred             HHHHHHHHccCCC
Q 033727           99 SQFREYCNAGNAE  111 (112)
Q Consensus        99 ~~lE~~~~~~~~~  111 (112)
                      .++|..+|.|+..
T Consensus        83 ~~lE~~~r~g~~~   95 (120)
T 1y6d_A           83 IAIDKKAKANQLQ   95 (120)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCChh
Confidence            9999999998653

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.79  E-value=1.1e-18  Score=115.10  Aligned_cols=87  Identities=14%  Similarity=0.289  Sum_probs=77.0

Q ss_pred             cCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHH
Q 033727           18 FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDA   97 (112)
Q Consensus        18 ~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~   97 (112)
                      |+..++|++.   +..+. .++++++.+++..|+++.++.+..|++++..+  ||+.+.+.+|+|||+|+++|+++|..+
T Consensus         1 ~~~~~~D~~~---~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~   74 (119)
T 3myf_A            1 FDLHTLNWDL---CLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRL   74 (119)
T ss_dssp             -CTTTCCHHH---HHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred             CCccccCHHH---HHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            4567899764   33323 34899999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHHccCC
Q 033727           98 CSQFREYCNAGNA  110 (112)
Q Consensus        98 ~~~lE~~~~~~~~  110 (112)
                      |..||++++.|+.
T Consensus        75 ~~~LE~~~r~~~~   87 (119)
T 3myf_A           75 CQEIESALKRQTP   87 (119)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999863

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.78  E-value=1.3e-18  Score=115.60  Aligned_cols=87  Identities=16%  Similarity=0.340  Sum_probs=77.5

Q ss_pred             cCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHH
Q 033727           18 FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDA   97 (112)
Q Consensus        18 ~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~   97 (112)
                      ...|++|++..   ..+. .+++++..+|+.+|+++.++.+..|++++..+  |++.+.+++|+|||+|+++|+.+|..+
T Consensus        10 ~~~~~~D~~~~---l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~   83 (123)
T 3iqt_A           10 NPNATLDWQLA---LRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNL   83 (123)
T ss_dssp             CGGGTCCHHHH---HHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred             cCCCccCHHHH---HHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            34578996643   3333 35899999999999999999999999999999  999999999999999999999999999


Q ss_pred             HHHHHHHHHccCC
Q 033727           98 CSQFREYCNAGNA  110 (112)
Q Consensus        98 ~~~lE~~~~~~~~  110 (112)
                      |..||+++++|+.
T Consensus        84 c~~LE~~~r~g~~   96 (123)
T 3iqt_A           84 CQLIEQQLRSGTK   96 (123)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999864

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.65  E-value=1.1e-16  Score=104.70  Aligned_cols=78  Identities=22%  Similarity=0.361  Sum_probs=65.7

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 033727           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (112)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~   98 (112)
                      +.+.||.+.+..   +. .++++|+.+|+..|++++++.+..|..+  ..  ||   .+.||+|||||++|||.+|..+|
T Consensus         7 ~~~~iD~~~L~~---~~-~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c   75 (113)
T 2ooc_A            7 ISGAVDFAYLEG---FA-AGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVC   75 (113)
T ss_dssp             --CCSCHHHHHH---HT-TTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCCcCHHHHHh---Hh-CCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHH
Confidence            457899766554   33 3589999999999999999999999887  34  65   79999999999999999999999


Q ss_pred             HHHHHHHHc
Q 033727           99 SQFREYCNA  107 (112)
Q Consensus        99 ~~lE~~~~~  107 (112)
                      .++|..++.
T Consensus        76 ~~lE~~~~~   84 (113)
T 2ooc_A           76 ERCEAGQES   84 (113)
T ss_dssp             HHHHTTSSC
T ss_pred             HHHHHHhhh
Confidence            999987754

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.60  E-value=8.1e-16  Score=101.08  Aligned_cols=70  Identities=14%  Similarity=0.248  Sum_probs=65.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHccCC
Q 033727           39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNA  110 (112)
Q Consensus        39 ~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~~~~~  110 (112)
                      .+..-.+++..|+++.++.+..|.+++..+  |+..+++.||+|||+++++|+.+++.+|.++|++++.++.
T Consensus        29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~   98 (116)
T 1sr2_A           29 AQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDV   98 (116)
T ss_dssp             HHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCH
T ss_pred             chhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCH
Confidence            355667789999999999999999999999  9999999999999999999999999999999999998864

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.53  E-value=3e-14  Score=91.33  Aligned_cols=66  Identities=18%  Similarity=0.326  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HccCC
Q 033727           43 VEEVVSLFYSDSARLIQNIEQTLS--------NRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNA  110 (112)
Q Consensus        43 ~~eli~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~---~~~~~  110 (112)
                      +.+++..|++++++.+..|+.++.        ..  ++..+.+.+|+|||+|+++|+..+..+|+.+|..+   +.|+.
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~   79 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI   79 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCC
Confidence            457999999999999999999985        33  56899999999999999999999999999999876   56553

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.42  E-value=6.5e-13  Score=89.36  Aligned_cols=65  Identities=20%  Similarity=0.370  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HccCC
Q 033727           44 EEVVSLFYSDSARLIQNIEQTLS--------NRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNA  110 (112)
Q Consensus        44 ~eli~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~---~~~~~  110 (112)
                      .+++..|++++++.+..|+.++.        ..  ++..+.+.+|+|||+|+++|+..+..+|+.+|..+   +.|..
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~   78 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI   78 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            36899999999999999999973        34  67899999999999999999999999999999865   56553

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.38  E-value=9.8e-13  Score=85.39  Aligned_cols=66  Identities=17%  Similarity=0.333  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC---CCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHccC
Q 033727           44 EEVVSLFYSDSARLIQNIEQTLSN---RPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGN  109 (112)
Q Consensus        44 ~eli~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~---~~~~~  109 (112)
                      .+++..|++++++.+..|++++..   .|.|   +..+.+.+|+|||+|+++|+..+..+|+.+|..   .+.|.
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~   79 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSE   79 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCC
Confidence            468999999999999999998632   2224   467899999999999999999999999999974   44554

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.38  E-value=5.3e-13  Score=90.54  Aligned_cols=67  Identities=15%  Similarity=0.370  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC---CCC---CHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHccCC
Q 033727           44 EEVVSLFYSDSARLIQNIEQTLSN---RPV---DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGNA  110 (112)
Q Consensus        44 ~eli~~F~~~~~~~l~~L~~a~~~---~~~---D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~---~~~~~~  110 (112)
                      .+++..|++++++.+..|+.++..   .|.   ++..+.+.+|+|||+|+++|+..+..+|+.+|..   .+.|..
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~   81 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEM   81 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            368999999999999999999832   122   4589999999999999999999999999999987   566653

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=99.12  E-value=1.1e-10  Score=79.14  Aligned_cols=63  Identities=21%  Similarity=0.350  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh---CCCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH
Q 033727           43 VEEVVSLFYSDSARLIQNIEQTLS---NRPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC  105 (112)
Q Consensus        43 ~~eli~~F~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~  105 (112)
                      ..+++..|++++.+.+..|+..+.   +.|.|   ...+.+.+|+|||+|+++|+..+..+|+.+|...
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll   77 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLI   77 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHH
Confidence            457899999999999999999753   33334   4578999999999999999999999999999865

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.92  E-value=2.1e-09  Score=77.22  Aligned_cols=63  Identities=16%  Similarity=0.342  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---CCCCCH---HHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 033727           44 EEVVSLFYSDSARLIQNIEQTLS---NRPVDF---SRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN  106 (112)
Q Consensus        44 ~eli~~F~~~~~~~l~~L~~a~~---~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~  106 (112)
                      .++++.|++++.+.+..|++.+.   +.|.|.   ..+.|.+|+|||+|+.+|+..+..+|+.+|....
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~   74 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD   74 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHH
Confidence            35889999999999999999753   344453   5778999999999999999999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	3e-28
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	2e-15
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	1e-13
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	1e-12
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	2e-10
d2ooca1	104	a.24.10.6 (A:8-111) Histidine phosphotransferase S	4e-06

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 97.7 bits (243), Expect = 3e-28
 Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 2/111 (1%)

Query: 3   SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQNI 61
           +  L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I  I
Sbjct: 2   AAALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEI 60

Query: 62  EQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
              L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +G
Sbjct: 61  ATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 111

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 64.3 bits (156), Expect = 2e-15
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 16  SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRL 75
            L +      E++ +     D+          +LF       ++ +    +    DF+ L
Sbjct: 7   QLIEVQLAQ-EEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAAL 63

Query: 76  DDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
               H+ KG  + +     K  C          +  G
Sbjct: 64  AQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPG 100

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.3 bits (148), Expect = 1e-13
 Identities = 14/89 (15%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 23  LDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQF 82
           ++   L ++  + DD + +F + ++  F   +      +++ L +   + + LD++ H  
Sbjct: 8   INWTILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQL-DGEKNLTELDNLGHFL 65

Query: 83  KGSCSSIGAKKVKDACSQFREYCNAGNAE 111
           KGS +++G +++   C + +         
Sbjct: 66  KGSSAALGLQRIAWVCERIQNLGRKMEHF 94

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (138), Expect = 1e-12
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 24  DSEQLI---QLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80
            SE L+    LE   +   P  + + +++F       +  +E  L+ +  D   + +  H
Sbjct: 2   KSEALLDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGH 59

Query: 81  QFKGSCSSIGAKKVKDACSQFREYCNAGNAEG 112
           + KG+  S+G + ++    Q +        + 
Sbjct: 60  KIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDN 91

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 51.7 bits (123), Expect = 2e-10
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 30  QLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSI 89
           ++E+L  +   + V  ++ +F  +    I  + +   +       L +I H  K S +S 
Sbjct: 10  KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASF 67

Query: 90  GAKKVKDACSQFREYCNAGNAE 111
           GA ++ +      +   A   +
Sbjct: 68  GADRLCERAIAIDKKAKANQLQ 89

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 40.0 bits (93), Expect = 4e-06
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 21  GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80
           G +D   L          +   V+EV++LF   +A     ++              D +H
Sbjct: 1   GAVDFAYLEGF----AAGDFAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVH 49

Query: 81  QFKGSCSSIGAKKVKDACSQFREYCNAGNA 110
             KG+   +GA  + + C +      +   
Sbjct: 50  TVKGAARGVGAFNLGEVCERCEAGQESLEG 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	99.92
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.85
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.83
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.82
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.75
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.71
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.13
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	99.11
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	89.97

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.92  E-value=2.7e-25  Score=149.17  Aligned_cols=108  Identities=43%  Similarity=0.739  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCHHHHHHHHcccc-CCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 033727            3 SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQD-DANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ   81 (112)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~-~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (112)
                      .++|++++...++++++++++| .+|.++..+.+ +++|+|+.+|+..|++++++.+..|+++++.++.||..+++.||+
T Consensus         2 ~~~l~~~~~~~~~~~~~~g~lD-~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~   80 (142)
T d1yvia1           2 AAALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCC-HHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhHHhccccc-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4789999999999999999999 56777766643 468999999999999999999999999998644499999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHHHHccCCC
Q 033727           82 FKGSCSSIGAKKVKDACSQFREYCNAGNAE  111 (112)
Q Consensus        82 LKGsa~~lGa~~l~~~~~~lE~~~~~~~~~  111 (112)
                      |||||+++|+.+++.+|..||.+++.++.+
T Consensus        81 LKGss~~lGa~~l~~~~~~lE~~~~~~~~~  110 (142)
T d1yvia1          81 LKGSSASVGAQKVKFTCMQFRQFCQDKSRD  110 (142)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhHHhhccHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999864

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4e-21  Score=131.70  Aligned_cols=91  Identities=14%  Similarity=0.367  Sum_probs=84.2

Q ss_pred             ccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 033727           17 LFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSN-RPVDFSRLDDILHQFKGSCSSIGAKKVK   95 (112)
Q Consensus        17 ~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~-~~~D~~~l~~~aH~LKGsa~~lGa~~l~   95 (112)
                      -.+..+||+.+|++|.+|. +++++|+.+||..|++++++.+..|++++.+ +  |+..+.++||+|||||+++|+.++.
T Consensus         2 ~~p~~~id~~~l~~l~~m~-~~d~~f~~~li~~F~~~~~~~~~~l~~al~~~~--d~~~l~~~aH~lKgss~~~G~~~~~   78 (166)
T d2r25a1           2 TIPSEIINWTILNEIISMD-DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRIA   78 (166)
T ss_dssp             CCCSCSSCHHHHHHHHHTT-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCcccccCHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            3567899999999999986 5689999999999999999999999999954 7  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCC
Q 033727           96 DACSQFREYCNAGNA  110 (112)
Q Consensus        96 ~~~~~lE~~~~~~~~  110 (112)
                      .+|..||+.++.++.
T Consensus        79 ~~~~~ie~~~~~~~~   93 (166)
T d2r25a1          79 WVCERIQNLGRKMEH   93 (166)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHccccc
Confidence            999999999998764

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.83  E-value=5.8e-22  Score=127.47  Aligned_cols=88  Identities=16%  Similarity=0.297  Sum_probs=82.3

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 033727           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (112)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~   98 (112)
                      +.++||..+|++|.+..   |++++.+++..|+++.++.+..|++++..+  |+..+++.+|+|||+|+++|+.+|+.+|
T Consensus         2 ~~~lld~~~l~~L~~~~---G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~--d~~~l~~~aH~LKGsa~~~Ga~~L~~~~   76 (114)
T d1y6da_           2 NTDVLNQQKIEELSAEI---GSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERA   76 (114)
T ss_dssp             CCTTTTTTHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            56899999999998765   578999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHHccCCC
Q 033727           99 SQFREYCNAGNAE  111 (112)
Q Consensus        99 ~~lE~~~~~~~~~  111 (112)
                      .+||.+++.|+.+
T Consensus        77 ~~lE~~~~~~~~~   89 (114)
T d1y6da_          77 IAIDKKAKANQLQ   89 (114)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCChh
Confidence            9999999988754

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.5e-21  Score=123.99  Aligned_cols=86  Identities=19%  Similarity=0.276  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHH
Q 033727           20 QGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACS   99 (112)
Q Consensus        20 ~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~   99 (112)
                      +++||.+.+.++.+..   |++++.+++..|+++.++.+..|+.++.++  |++.+++.+|+|||+|+++|+..++.+|.
T Consensus         4 e~~lD~~~L~~l~~~~---g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~--d~~~~~~~aH~LKgsa~~~G~~~l~~~~~   78 (118)
T d2a0ba_           4 EALLDIPMLEQYLELV---GPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQLGQ   78 (118)
T ss_dssp             HHHSCHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHh---CHHHHHHHHHHHHHHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            5689999999988776   789999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHccCC
Q 033727          100 QFREYCNAGNA  110 (112)
Q Consensus       100 ~lE~~~~~~~~  110 (112)
                      .||.+++.++.
T Consensus        79 ~lE~~~~~~~~   89 (118)
T d2a0ba_          79 QIQSPDLPAWE   89 (118)
T ss_dssp             HHTCTTSTTHH
T ss_pred             HHHHHHHcCCH
Confidence            99999988764

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3e-20  Score=120.42  Aligned_cols=94  Identities=14%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             hcccCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHH
Q 033727           15 RSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKV   94 (112)
Q Consensus        15 ~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l   94 (112)
                      .++.+.++++.+.+..... ++++.+.|+.+++..|++++|..+..|+++++.+  ||..+++.||+|||+|+++|+.++
T Consensus         6 ~~l~~~~l~~~~~~~~~~~-~d~~~~~~~~~~~~lF~~~~p~~l~~L~~a~~~~--D~~~l~~~aH~LKGs~~~~Ga~~l   82 (116)
T d1sr2a_           6 LQLIEVQLAQEEVTESPLG-GDENAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPG   82 (116)
T ss_dssp             CCSCSSSSCSCCCCCCCSC-SSHHHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhhhhHHHHHHhHhh-cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCchHH
Confidence            3455566666322111111 1122355788899999999999999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCC
Q 033727           95 KDACSQFREYCNAGNAE  111 (112)
Q Consensus        95 ~~~~~~lE~~~~~~~~~  111 (112)
                      +.+|..||.+++.|+.+
T Consensus        83 ~~~~~~lE~~~~~~~~~   99 (116)
T d1sr2a_          83 KQLCETLEHLIREKDVP   99 (116)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCHH
Confidence            99999999999999854

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.71  E-value=2.7e-18  Score=109.35  Aligned_cols=78  Identities=22%  Similarity=0.354  Sum_probs=66.2

Q ss_pred             CCCCHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 033727           21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ  100 (112)
Q Consensus        21 ~~lD~~~l~~L~~l~~~~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~l~~~~~~  100 (112)
                      |.||++   .|.++. +++++++.+++..|+++++..+..+     ..  |++.+++.+|+|||+|+|+|+.+|+.+|.+
T Consensus         1 gaiD~~---~L~~~~-ggd~~l~~~ll~~F~e~~~~~~~~l-----~~--d~~~~~~~aH~LKGsa~~iGa~~L~~~a~~   69 (104)
T d2ooca1           1 GAVDFA---YLEGFA-AGDFAVVDEVLALFREQAALWAPML-----DP--THPGWKDAVHTVKGAARGVGAFNLGEVCER   69 (104)
T ss_dssp             CCSCHH---HHHHHT-TTCHHHHHHHHHHHHHHHHHHGGGC-----ST--TSTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CccCHH---HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHH-----cc--CHHHHHHHHHHHHhHHHHcCHHHHHHHHHH
Confidence            468955   455555 3589999999999999999887554     35  899999999999999999999999999999


Q ss_pred             HHHHHHccC
Q 033727          101 FREYCNAGN  109 (112)
Q Consensus       101 lE~~~~~~~  109 (112)
                      ||.+++.++
T Consensus        70 lE~~~~~~~   78 (104)
T d2ooca1          70 CEAGQESLE   78 (104)
T ss_dssp             HHTTSSCHH
T ss_pred             HHHHHHccC
Confidence            999887653

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=5.4e-11  Score=74.53  Aligned_cols=62  Identities=23%  Similarity=0.470  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh---CCCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 033727           45 EVVSLFYSDSARLIQNIEQTLS---NRPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN  106 (112)
Q Consensus        45 eli~~F~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~  106 (112)
                      ++++.|++++.+.+..++..+.   +.|.|   ...+.|.+|+|||+|+.+|+..+..+|+.+|....
T Consensus         5 E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~   72 (105)
T d1tqga_           5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILD   72 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHH
Confidence            6899999999999999998763   23334   46788999999999999999999999999997643

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.11  E-value=9.7e-11  Score=75.61  Aligned_cols=62  Identities=16%  Similarity=0.352  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---hCCCCCH---HHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 033727           45 EVVSLFYSDSARLIQNIEQTL---SNRPVDF---SRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN  106 (112)
Q Consensus        45 eli~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~l~~~~~~lE~~~~  106 (112)
                      ++++.|++++.+.+..|...+   .+.+.|.   ..+.+.+|+|||+|+.+|+..+..+|+.+|....
T Consensus         4 e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~   71 (128)
T d1i5na_           4 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD   71 (128)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHH
Confidence            578999999999999999986   3333354   4788999999999999999999999999997654

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=89.97  E-value=1  Score=26.05  Aligned_cols=44  Identities=11%  Similarity=0.108  Sum_probs=35.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhh
Q 033727           38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFK   83 (112)
Q Consensus        38 ~~~~~~~eli~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (112)
                      +++.-+..+....-......+..|..++..+  ||..+.....+||
T Consensus        33 ~d~~~l~~l~~ei~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kLk   76 (95)
T d1fpoa2          33 KDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR   76 (95)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhH
Confidence            4666677777777777788888899999999  9999998888875