Citrus Sinensis ID: 033728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEccccccccccccccccccHHHHHHHcccHHHHHccccHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHccccccccHHHHHHHEEEEEEEHccEEEEEcccccccccccccccccHHHHHHHHccHHHHHccccHHHHHHHHHcHcccccccccccccccccc
Coil and Loop (DISEMBL)
MTGGGGNVGAVLTQLIFFkgskysketGITLMGVMIICCTLpimliyfpqwggmfcgpsknmtteedYYLSewnskekqkgfhqsslkfadnsrsergrsrvntttippnqv
Flexible Loop (DISEMBL)
mtggggnvgaVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSKEKQKGFHQSslkfadnsrsergrsrvntttippnqv
Low Complexity Region (SEG)
MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV
Disordered region (IsUnstruct)
******NVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLS*****************************************
Disordered Region (DISOPRED)
*T*GGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKN*TTEEDYYL******************************************
Disordered Region (DISEMBL)
MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSK*************************VNTTTIPPNQV
Disordered Region (DISPRO)
****GGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSKEKQKGFHQSSLKFADN********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q9LPV5	502	High affinity nitrate tra	yes	no	0.937	0.209	0.731	1e-40
Q9FJH8	527	High affinity nitrate tra	no	no	1.0	0.212	0.543	6e-31
O82811	530	High-affinity nitrate tra	no	no	0.964	0.203	0.558	1e-30
Q9FJH7	539	High affinity nitrate tra	no	no	0.955	0.198	0.545	1e-29
Q9LXH0	542	High affinity nitrate tra	no	no	0.883	0.182	0.534	2e-28
Q9LMZ9	522	High-affinity nitrate tra	no	no	0.892	0.191	0.504	3e-24
Q9LYK2	493	High affinity nitrate tra	no	no	0.517	0.117	0.534	1e-12

>sp|Q9LPV5|NRT25_ARATH High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1

 Score =  164 bits (415), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/108 (73%), Positives = 87/108 (80%), Gaps = 3/108 (2%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           MTG GGNVGAVLTQLIFFKGS Y++ETGITLMGVM I C+LPI LIYFPQWGGMFCGPS 
Sbjct: 396 MTGAGGNVGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPICLIYFPQWGGMFCGPSS 455

Query: 61  NMTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIP 108
              TEEDYYL+EWN +EK+K  H  S KFA+ S SERGR+   TTT P
Sbjct: 456 KKVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGRA---TTTHP 500

Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJH8|NRT24_ARATH High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 80/114 (70%), Gaps = 2/114 (1%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           +TG GGN G+ LTQL+FF  S +S E G+T MGVMI+ CTLP+ L++FPQWG MF   ++
Sbjct: 414 LTGAGGNFGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTE 473

Query: 61  N--MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV 112
           +   +TEE YY+ EW   EK+KG H+ SLKFA NSRSERGR   +  + PP  V
Sbjct: 474 DEVKSTEEYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRVASAPSPPPEHV 527

Involved in high-affinity nitrate transport. Might be involved in the transfer of nitrate from stored pools to cytoplasm.

Arabidopsis thaliana (taxid: 3702)

>sp|O82811|NRT21_ARATH High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 79/111 (71%), Gaps = 3/111 (2%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           +TG GGN G+ LTQL+FF  S ++ E G+T MGVMI+ CTLP+ L++FPQWG MF  PS 
Sbjct: 414 LTGAGGNFGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPST 473

Query: 61  NMT--TEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPP 109
           +    TE  YY SEWN +EKQK  HQ SL+FA+N++SE GR RV +   PP
Sbjct: 474 DPVKGTEAHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGR-RVRSAATPP 523

Involved in nitrate transport, but does not seem to be able to mediate transport by its own. Acts as a dual component transporter with NTR3.1. Acts as a repressor of lateral root initiation under high sucrose/low nitrate conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJH7|NRT23_ARATH High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana GN=NRT2.3 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 3/110 (2%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           +TG GGN G+ LTQL+FF  +++S   G++LMGVM + CTLP+  I+FPQWG MF  PS 
Sbjct: 421 LTGAGGNFGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPST 480

Query: 61  N--MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIP 108
           +   + EE YY SEW   EKQ+G H+ S+KFA+NSRSERGR +V    IP
Sbjct: 481 DGERSQEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGR-KVALANIP 529

Involved in high-affinity nitrate transport. Acts as a dual component transporter with NTR3.1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXH0|NRT26_ARATH High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           +TG GGN G+ +TQL+FF  S++S   G++LMGVM + C+LP+  I+FPQWG MF  PS+
Sbjct: 424 LTGAGGNFGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFLRPSQ 483

Query: 61  N--MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGR 99
           +   + EE YY +EW  +EK  G H+ S+KFA+NSRSERGR
Sbjct: 484 DGEKSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGR 524

Involved in high-affinity nitrate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMZ9|NRT22_ARATH High-affinity nitrate transporter 2.2 OS=Arabidopsis thaliana GN=NRT2.2 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           +TG GGN G+ LTQL+FF  S+++ E G+T MGVMI+ CTLP+ LI+FPQWG MF  PS 
Sbjct: 412 LTGAGGNFGSGLTQLVFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSN 471

Query: 61  N-MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRS 100
           + +   E YY+ E++ +E+Q G H  S  FAD +++E G S
Sbjct: 472 DSVDATEHYYVGEYSKEEQQIGMHLKSKLFADGAKTEGGSS 512

Involved in high-affinity nitrate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYK2|NRT27_ARATH High affinity nitrate transporter 2.7 OS=Arabidopsis thaliana GN=NRT2.7 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGP 58
           +TG GG VGAV+TQ + F G    K+  I+LMG+M     L +  IYFPQWGGM CGP
Sbjct: 403 ITGSGGTVGAVVTQFLLFSGDDVRKQRSISLMGLMTFVFALSVTSIYFPQWGGMCCGP 460

Involved in high-affinity nitrate transport. Controls nitrate content in seeds.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
223712780	504	Rehd high-affinity nitrate transporter N	0.901	0.200	0.786	6e-44
385724802	508	nitrate transporter [Gossypium hirsutum]	0.892	0.196	0.823	2e-43
255573963	504	nitrate transporter, putative [Ricinus c	0.892	0.198	0.774	2e-41
225425615	505	PREDICTED: high affinity nitrate transpo	0.875	0.194	0.8	3e-41
224121818	508	predicted protein [Populus trichocarpa]	0.910	0.200	0.740	4e-40
297739093	182	unnamed protein product [Vitis vinifera]	0.875	0.538	0.8	5e-40
57283317	508	nitrate transporter [Populus tremula x P	0.857	0.188	0.804	8e-40
15222118	502	nitrate transporter2.5 [Arabidopsis thal	0.937	0.209	0.731	5e-39
356567658	510	PREDICTED: high affinity nitrate transpo	0.883	0.194	0.75	1e-38
224133638	491	predicted protein [Populus trichocarpa]	0.803	0.183	0.835	2e-38

>gi|223712780|gb|ACN22073.1| Rehd high-affinity nitrate transporter NRT2.5 [Malus hupehensis]

 Score =  181 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/103 (78%), Positives = 94/103 (91%), Gaps = 2/103 (1%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYY 69
           AVLTQLIFFKGSKYSKETGITLMG+MIICCTLP  LIYFPQWGGMFCGPSKN  TEEDYY
Sbjct: 399 AVLTQLIFFKGSKYSKETGITLMGIMIICCTLPTTLIYFPQWGGMFCGPSKNKATEEDYY 458

Query: 70  LSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV 112
           +SEW+SKEK+KGFHQ+S+KFA+NSRSERG+S  ++ T P +++
Sbjct: 459 MSEWSSKEKEKGFHQASVKFAENSRSERGKS--DSVTRPSDEI 499

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385724802|gb|AFI74368.1| nitrate transporter [Gossypium hirsutum]

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/102 (82%), Positives = 93/102 (91%), Gaps = 2/102 (1%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGP-SKNMTTEEDY 68
           AVLTQLIFFKGSKYSKETGITLMGVMI+CCTLPI LIYFPQWGGMFCGP S+ + TEEDY
Sbjct: 401 AVLTQLIFFKGSKYSKETGITLMGVMIVCCTLPIFLIYFPQWGGMFCGPSSEKIATEEDY 460

Query: 69  YLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPN 110
           YLSEW+SKE+ KG HQ+SLKFADNSRSERGR RV++ T+P N
Sbjct: 461 YLSEWSSKEQGKGLHQASLKFADNSRSERGR-RVHSQTLPSN 501

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573963|ref|XP_002527899.1| nitrate transporter, putative [Ricinus communis] gi|223532674|gb|EEF34456.1| nitrate transporter, putative [Ricinus communis]

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/102 (77%), Positives = 91/102 (89%), Gaps = 2/102 (1%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKN-MTTEEDY 68
           AVLTQLIFF GSKYSKETGI+LMG+MIICCTLPI LIYFPQWGGMFCGPS + +  EEDY
Sbjct: 397 AVLTQLIFFTGSKYSKETGISLMGMMIICCTLPICLIYFPQWGGMFCGPSSSEIAMEEDY 456

Query: 69  YLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPN 110
           Y+SEWNSKEK++G HQ+SLKFADNSRSERG+ R ++ T+P N
Sbjct: 457 YMSEWNSKEKEQGLHQASLKFADNSRSERGK-RSDSDTMPAN 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425615|ref|XP_002266184.1| PREDICTED: high affinity nitrate transporter 2.5 [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/100 (80%), Positives = 86/100 (86%), Gaps = 2/100 (2%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGP-SKNMTTEEDY 68
           AVLTQLIFFKGS+YSKETGITLMG+M++CCTLPI LIYFPQWGGMFCGP SK   TEEDY
Sbjct: 399 AVLTQLIFFKGSRYSKETGITLMGIMMLCCTLPICLIYFPQWGGMFCGPSSKENATEEDY 458

Query: 69  YLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIP 108
           Y SEWNSKEK+KGFH  SLKFADNSR ERGR RV +   P
Sbjct: 459 YSSEWNSKEKEKGFHHGSLKFADNSRGERGR-RVGSAATP 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121818|ref|XP_002318680.1| predicted protein [Populus trichocarpa] gi|222859353|gb|EEE96900.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/104 (74%), Positives = 90/104 (86%), Gaps = 2/104 (1%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGP-SKNMTTEEDY 68
           AVLTQLIFFKGSKYSKETGIT MGVMIICCT PI  +YFPQWGGMFCGP SK + TEE+Y
Sbjct: 401 AVLTQLIFFKGSKYSKETGITHMGVMIICCTFPICFVYFPQWGGMFCGPSSKTVATEEEY 460

Query: 69  YLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV 112
           YLSEW+++EK+KG HQ+SLKFADNSRSERG  R ++ T P +++
Sbjct: 461 YLSEWSTEEKEKGLHQASLKFADNSRSERG-GRADSETRPADEI 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739093|emb|CBI28582.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 86/100 (86%), Gaps = 2/100 (2%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGP-SKNMTTEEDY 68
           AVLTQLIFFKGS+YSKETGITLMG+M++CCTLPI LIYFPQWGGMFCGP SK   TEEDY
Sbjct: 76  AVLTQLIFFKGSRYSKETGITLMGIMMLCCTLPICLIYFPQWGGMFCGPSSKENATEEDY 135

Query: 69  YLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIP 108
           Y SEWNSKEK+KGFH  SLKFADNSR ERGR RV +   P
Sbjct: 136 YSSEWNSKEKEKGFHHGSLKFADNSRGERGR-RVGSAATP 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57283317|emb|CAG26717.1| nitrate transporter [Populus tremula x Populus tremuloides]

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/97 (80%), Positives = 84/97 (86%), Gaps = 1/97 (1%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKN-MTTEEDY 68
           AVLTQLIFF+GSKYSKE GI LMGVMIICCTLPI LI+FPQWGGMFCGPS   + TEEDY
Sbjct: 401 AVLTQLIFFRGSKYSKERGIMLMGVMIICCTLPICLIHFPQWGGMFCGPSSTKIATEEDY 460

Query: 69  YLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTT 105
           YLSEWNS+EK+KG H SSLKFADNSRSERGR   + T
Sbjct: 461 YLSEWNSEEKEKGLHLSSLKFADNSRSERGRKEDSET 497

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222118|ref|NP_172754.1| nitrate transporter2.5 [Arabidopsis thaliana] gi|75264143|sp|Q9LPV5.1|NRT25_ARATH RecName: Full=High affinity nitrate transporter 2.5; Short=AtNRT2:5 gi|8698741|gb|AAF78499.1|AC012187_19 Strong similarity to high-affinity nitrate transporter ACH2 from Arabidopsis thaliana gb|AF019749 [Arabidopsis thaliana] gi|332190831|gb|AEE28952.1| nitrate transporter2.5 [Arabidopsis thaliana]

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/108 (73%), Positives = 87/108 (80%), Gaps = 3/108 (2%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           MTG GGNVGAVLTQLIFFKGS Y++ETGITLMGVM I C+LPI LIYFPQWGGMFCGPS 
Sbjct: 396 MTGAGGNVGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPICLIYFPQWGGMFCGPSS 455

Query: 61  NMTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIP 108
              TEEDYYL+EWN +EK+K  H  S KFA+ S SERGR+   TTT P
Sbjct: 456 KKVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGRA---TTTHP 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567658|ref|XP_003552034.1| PREDICTED: high affinity nitrate transporter 2.5-like [Glycine max]

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/100 (75%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 13  TQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSE 72
           TQLIFFKGSK+SKE GITLMG MII CTLPI LIYFPQWGGMF GPS    TEEDYYL+E
Sbjct: 407 TQLIFFKGSKFSKERGITLMGAMIIICTLPICLIYFPQWGGMFSGPSSKKVTEEDYYLAE 466

Query: 73  WNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV 112
           WNSKEK+KG H +SLKFADNSRSERGR ++N +T P  ++
Sbjct: 467 WNSKEKEKGSHHASLKFADNSRSERGR-KLNASTEPTEEI 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133638|ref|XP_002321624.1| predicted protein [Populus trichocarpa] gi|222868620|gb|EEF05751.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/91 (83%), Positives = 79/91 (86%), Gaps = 1/91 (1%)

Query: 10  AVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMT-TEEDY 68
           AVLTQLIFFKGSKYSKE GI LMGVMIICCTLPI  I+FPQWGGMFCGPS   T TEEDY
Sbjct: 401 AVLTQLIFFKGSKYSKERGIMLMGVMIICCTLPICFIHFPQWGGMFCGPSSAKTATEEDY 460

Query: 69  YLSEWNSKEKQKGFHQSSLKFADNSRSERGR 99
           YLSEW S+EK+KG H SSLKFADNSR ERGR
Sbjct: 461 YLSEWTSEEKEKGLHLSSLKFADNSRRERGR 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2010391	502	NRT2.5 "nitrate transporter2.5	0.937	0.209	0.731	9.9e-39
TAIR|locus:2159280	527	NRT2.4 "nitrate transporter 2.	1.0	0.212	0.543	1.5e-29
TAIR|locus:2205190	530	NRT2:1 "AT1G08090" [Arabidopsi	0.964	0.203	0.558	1.9e-29
TAIR|locus:2159290	539	NRT2.3 "AT5G60780" [Arabidopsi	0.955	0.198	0.545	3.7e-28
TAIR|locus:2075909	542	NRT2.6 "high affinity nitrate	0.883	0.182	0.534	1.7e-26
TAIR|locus:2205195	522	NRT2.2 "nitrate transporter 2.	0.892	0.191	0.504	1.4e-23
TAIR|locus:2222652	493	NRT2.7 "high affinity nitrate	0.589	0.133	0.522	1.7e-13

TAIR|locus:2010391 NRT2.5 "nitrate transporter2.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 79/108 (73%), Positives = 87/108 (80%)

Query:     1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
             MTG GGNVGAVLTQLIFFKGS Y++ETGITLMGVM I C+LPI LIYFPQWGGMFCGPS 
Sbjct:   396 MTGAGGNVGAVLTQLIFFKGSTYTRETGITLMGVMSIACSLPICLIYFPQWGGMFCGPSS 455

Query:    61 NMTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIP 108
                TEEDYYL+EWN +EK+K  H  S KFA+ S SERGR+   TTT P
Sbjct:   456 KKVTEEDYYLAEWNDEEKEKNLHIGSQKFAETSISERGRA---TTTHP 500

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2159280 NRT2.4 "nitrate transporter 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 62/114 (54%), Positives = 80/114 (70%)

Query:     1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
             +TG GGN G+ LTQL+FF  S +S E G+T MGVMI+ CTLP+ L++FPQWG MF   ++
Sbjct:   414 LTGAGGNFGSGLTQLVFFSTSTFSTEQGLTWMGVMIMACTLPVTLVHFPQWGSMFLPSTE 473

Query:    61 N--MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPPNQV 112
             +   +TEE YY+ EW   EK+KG H+ SLKFA NSRSERGR   +  + PP  V
Sbjct:   474 DEVKSTEEYYYMKEWTETEKRKGMHEGSLKFAVNSRSERGRRVASAPSPPPEHV 527

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IGI;ISS

GO:0071249 "cellular response to nitrate" evidence=IGI

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2205190 NRT2:1 "AT1G08090" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 62/111 (55%), Positives = 79/111 (71%)

Query:     1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
             +TG GGN G+ LTQL+FF  S ++ E G+T MGVMI+ CTLP+ L++FPQWG MF  PS 
Sbjct:   414 LTGAGGNFGSGLTQLLFFSTSHFTTEQGLTWMGVMIVACTLPVTLVHFPQWGSMFLPPST 473

Query:    61 NMT--TEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIPP 109
             +    TE  YY SEWN +EKQK  HQ SL+FA+N++SE GR RV +   PP
Sbjct:   474 DPVKGTEAHYYGSEWNEQEKQKNMHQGSLRFAENAKSEGGR-RVRSAATPP 523

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS;TAS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0016020 "membrane" evidence=ISS

GO:0048527 "lateral root development" evidence=IMP

GO:0010167 "response to nitrate" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2159290 NRT2.3 "AT5G60780" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 3.7e-28, P = 3.7e-28
 Identities = 60/110 (54%), Positives = 78/110 (70%)

Query:     1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
             +TG GGN G+ LTQL+FF  +++S   G++LMGVM + CTLP+  I+FPQWG MF  PS 
Sbjct:   421 LTGAGGNFGSGLTQLLFFSSARFSTAEGLSLMGVMAVLCTLPVAFIHFPQWGSMFLRPST 480

Query:    61 N--MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRSRVNTTTIP 108
             +   + EE YY SEW   EKQ+G H+ S+KFA+NSRSERGR +V    IP
Sbjct:   481 DGERSQEEYYYGSEWTENEKQQGLHEGSIKFAENSRSERGR-KVALANIP 529

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2075909 NRT2.6 "high affinity nitrate transporter 2.6" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 54/101 (53%), Positives = 74/101 (73%)

Query:     1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
             +TG GGN G+ +TQL+FF  S++S   G++LMGVM + C+LP+  I+FPQWG MF  PS+
Sbjct:   424 LTGAGGNFGSGVTQLLFFSSSRFSTAEGLSLMGVMAVVCSLPVAFIHFPQWGSMFLRPSQ 483

Query:    61 N--MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGR 99
             +   + EE YY +EW  +EK  G H+ S+KFA+NSRSERGR
Sbjct:   484 DGEKSKEEHYYGAEWTEEEKSLGLHEGSIKFAENSRSERGR 524

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2205195 NRT2.2 "nitrate transporter 2.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/101 (50%), Positives = 71/101 (70%)

Query:     1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
             +TG GGN G+ LTQL+FF  S+++ E G+T MGVMI+ CTLP+ LI+FPQWG MF  PS 
Sbjct:   412 LTGAGGNFGSGLTQLVFFSTSRFTTEEGLTWMGVMIVACTLPVTLIHFPQWGSMFFPPSN 471

Query:    61 N-MTTEEDYYLSEWNSKEKQKGFHQSSLKFADNSRSERGRS 100
             + +   E YY+ E++ +E+Q G H  S  FAD +++E G S
Sbjct:   472 DSVDATEHYYVGEYSKEEQQIGMHLKSKLFADGAKTEGGSS 512

GO:0005886 "plasma membrane" evidence=ISM

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA;IMP;TAS

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2222652 NRT2.7 "high affinity nitrate transporter 2.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 35/67 (52%), Positives = 44/67 (65%)

Query:     1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
             +TG GG VGAV+TQ + F G    K+  I+LMG+M     L +  IYFPQWGGM CGPS 
Sbjct:   403 ITGSGGTVGAVVTQFLLFSGDDVRKQRSISLMGLMTFVFALSVTSIYFPQWGGMCCGPSS 462

Query:    61 NMTTEED 67
             + + EED
Sbjct:   463 S-SEEED 468


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.47    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.60u 0.12s 12.72t   Elapsed:  00:00:00
  Total cpu time:  12.60u 0.12s 12.72t   Elapsed:  00:00:00
  Start:  Mon May 20 14:59:39 2013   End:  Mon May 20 14:59:39 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0015112 "nitrate transmembrane transporter activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LPV5	NRT25_ARATH	No assigned EC number	0.7314	0.9375	0.2091	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002765001 SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (505 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
PLN00028	476	PLN00028, PLN00028, nitrate transmembrane transpor	2e-50

>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional

 Score =  165 bits (419), Expect = 2e-50
 Identities = 66/91 (72%), Positives = 75/91 (82%), Gaps = 1/91 (1%)

Query: 1   MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSK 60
           +TG GGNVGAVLTQL+FF GS YS ETGI+LMGVMII CTLP+  I+FPQWGGMF GPSK
Sbjct: 387 LTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIHFPQWGGMFFGPSK 446

Query: 61  NMTTEEDYYLSEWNSKEKQKGFHQSSLKFAD 91
           +   EEDYY SEW  +EK+KG HQ SLKFA+
Sbjct: 447 D-AVEEDYYASEWTEEEKEKGLHQGSLKFAE 476

Length = 476

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PLN00028	476	nitrate transmembrane transporter; Provisional	99.67

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.67  E-value=4e-17  Score=133.85  Aligned_cols=90  Identities=72%  Similarity=1.274  Sum_probs=80.8

Q ss_pred             CcccCccHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhhcceeeEeeccCCCCccCCCCCCCCccchhhhccCHHHHhh
Q 033728            1 MTGGGGNVGAVLTQLIFFKGSKYSKETGITLMGVMIICCTLPIMLIYFPQWGGMFCGPSKNMTTEEDYYLSEWNSKEKQK   80 (112)
Q Consensus         1 IVGAGGNvGaVl~~~lF~~~~~y~~~~g~~~mGi~ii~~tl~v~~I~Fp~wg~mf~~~~~~~~~ee~Yy~~e~~~~e~~~   80 (112)
                      +++++||+|+++.++++-.....++..+|.++|++.++++++.+++|+|+|++||..+. +|..+||||.+||+|+|+++
T Consensus       387 ~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  465 (476)
T PLN00028        387 LTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIHFPQWGGMFFGPS-KDAVEEDYYASEWTEEEKEK  465 (476)
T ss_pred             hhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHheeccchhhhhcCCC-cccchhhhhhcccchhhhhc
Confidence            45789999999999998654333445599999999999999999999999999999999 88889999999999999999


Q ss_pred             cccccchhhhh
Q 033728           81 GFHQSSLKFAD   91 (112)
Q Consensus        81 g~h~~s~kfa~   91 (112)
                      |+|+.++||+|
T Consensus       466 ~~~~~~~~~~~  476 (476)
T PLN00028        466 GLHQGSLKFAE  476 (476)
T ss_pred             ccccccccccC
Confidence            99999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 4/20 (20%)

Query: 77 EKQ--KGFHQSSLK-FADNS 93
          EKQ  K   Q+SLK +AD+S
Sbjct: 18 EKQALKKL-QASLKLYADDS 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00