Citrus Sinensis ID: 033730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEES
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHccccccccccccccHHccccHHHcccccc
Coil and Loop (DISEMBL)
msvhspckappssasslpkeqSQVELELRLLEAlevyppvklrgihrHFVLYGLMEFLRRRfdrhfapdEVLQLLDRFynldmlkpddeeMEILNheedfclpqsyfdkees
Flexible Loop (DISEMBL)
msvhspckappssasslpkeqSQVELELRLLEALEvyppvklrgihRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHeedfclpqsyfdkees
Low Complexity Region (SEG)
MSVHspckappssasslpkEQSQVelelrllealeVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEES
Disordered region (IsUnstruct)
*************************LELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKP*****EILNHEEDFCL**********
Disordered Region (DISOPRED)
************************ELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQS*F*****
Disordered Region (DISEMBL)
************************ELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEES
Disordered Region (DISPRO)
*********************SQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYF*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
449434730	126	PREDICTED: uncharacterized protein LOC10	1.0	0.888	0.839	2e-48
224101441	129	predicted protein [Populus trichocarpa]	0.991	0.860	0.891	3e-44
255542056	129	conserved hypothetical protein [Ricinus	0.991	0.860	0.882	3e-44
326513352	122	predicted protein [Hordeum vulgare subsp	0.991	0.909	0.720	2e-40
297738077	116	unnamed protein product [Vitis vinifera]	1.0	0.965	0.75	3e-39
242091069	116	hypothetical protein SORBIDRAFT_09g02532	0.955	0.922	0.738	3e-39
115464845	122	Os05g0512500 [Oryza sativa Japonica Grou	0.991	0.909	0.684	4e-39
195638382	116	hypothetical protein [Zea mays]	0.955	0.922	0.719	9e-38
194701320	116	unknown [Zea mays] gi|195606180|gb|ACG24	0.955	0.922	0.710	1e-37
357487531	131	hypothetical protein MTR_5g044200 [Medic	1.0	0.854	0.75	5e-37

>gi|449434730|ref|XP_004135149.1| PREDICTED: uncharacterized protein LOC101212766 [Cucumis sativus]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 105/112 (93%)

Query: 1   MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR 60
           +SVHSPCKAPPSSASSLPKE  Q+ELEL+LL+ALE+YP VKL+GIHRHFVL+GLMEFLRR
Sbjct: 15  ISVHSPCKAPPSSASSLPKEHPQIELELKLLQALEIYPLVKLQGIHRHFVLFGLMEFLRR 74

Query: 61  RFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEES 112
            FDR F+ DEVLQLLDRFYNL+MLKPDDEEMEILNHEEDFCLPQ++F KEES
Sbjct: 75  SFDRQFSSDEVLQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTFFVKEES 126

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101441|ref|XP_002312281.1| predicted protein [Populus trichocarpa] gi|222852101|gb|EEE89648.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 104/111 (93%)

Query: 1   MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR 60
           MSVHSPCKAPPSSASSLPKEQSQVELELRLLE LE+YPPVKLRG+HRHFVLYGLMEFLRR
Sbjct: 19  MSVHSPCKAPPSSASSLPKEQSQVELELRLLEGLEIYPPVKLRGMHRHFVLYGLMEFLRR 78

Query: 61  RFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
            FDR F+PDEVLQLLDRFYN++MLKPDDEE EILNHEEDF LPQ YF KEE
Sbjct: 79  SFDRQFSPDEVLQLLDRFYNIEMLKPDDEEAEILNHEEDFSLPQDYFVKEE 129

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542056|ref|XP_002512092.1| conserved hypothetical protein [Ricinus communis] gi|223549272|gb|EEF50761.1| conserved hypothetical protein [Ricinus communis]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/111 (88%), Positives = 107/111 (96%)

Query: 1   MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR 60
           MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALE+YPPVKLRG+HRHFVL+GLMEFLR+
Sbjct: 19  MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEIYPPVKLRGMHRHFVLFGLMEFLRK 78

Query: 61  RFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
            FDRHF+P+EVLQLLDRFYN++MLKPDDEE+EIL HEEDF LPQSYF KEE
Sbjct: 79  SFDRHFSPEEVLQLLDRFYNIEMLKPDDEEIEILGHEEDFSLPQSYFVKEE 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326513352|dbj|BAK06916.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 93/111 (83%)

Query: 1   MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR 60
           +S  SP +APPSSASSLPKEQSQVELELRLL+ALE YPP KL+GIHRHF+LYGLME+LR+
Sbjct: 12  LSAQSPAQAPPSSASSLPKEQSQVELELRLLQALEFYPPSKLKGIHRHFILYGLMEYLRK 71

Query: 61  RFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
             DR F+ DEVLQLLDRF+NL+MLKPDD+E E     E+F LP S+F KEE
Sbjct: 72  SLDRQFSADEVLQLLDRFFNLEMLKPDDDEKENFGQTEEFALPDSFFKKEE 122

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738077|emb|CBI27278.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/116 (75%), Positives = 100/116 (86%), Gaps = 4/116 (3%)

Query: 1   MSVHSPCKAPPSSASSLP----KEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLME 56
           MSVHSPCKAPPSS SSL      EQSQV+LELR+LEALE+YP VKL+GIHRHF+LY LME
Sbjct: 1   MSVHSPCKAPPSSTSSLSKASLNEQSQVDLELRILEALEIYPLVKLQGIHRHFILYSLME 60

Query: 57  FLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEES 112
           F+RR F+R+F  +EVLQLLDRFYNL+MLKPDDE+ E L+ EE+FCLPQSYF KEES
Sbjct: 61  FMRRSFERNFTSEEVLQLLDRFYNLEMLKPDDEDSEFLSQEEEFCLPQSYFAKEES 116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242091069|ref|XP_002441367.1| hypothetical protein SORBIDRAFT_09g025320 [Sorghum bicolor] gi|241946652|gb|EES19797.1| hypothetical protein SORBIDRAFT_09g025320 [Sorghum bicolor]

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 94/107 (87%)

Query: 5   SPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDR 64
           SP +APPSSASSLPKEQSQVELELRLL+ALE YPP KL+GIHRHFVLYGLMEFLR+  DR
Sbjct: 10  SPAQAPPSSASSLPKEQSQVELELRLLQALEFYPPSKLKGIHRHFVLYGLMEFLRKSLDR 69

Query: 65  HFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
            F+PDEVLQLLDRF+NL+MLKP+D+E +  +  E+F LP+S+ +KEE
Sbjct: 70  QFSPDEVLQLLDRFFNLEMLKPEDDEKDNFSQGEEFSLPESFLNKEE 116

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115464845|ref|NP_001056022.1| Os05g0512500 [Oryza sativa Japonica Group] gi|48475079|gb|AAT44148.1| unknown protein [Oryza sativa Japonica Group] gi|113579573|dbj|BAF17936.1| Os05g0512500 [Oryza sativa Japonica Group] gi|215692897|dbj|BAG88317.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197092|gb|EEC79519.1| hypothetical protein OsI_20599 [Oryza sativa Indica Group] gi|222632203|gb|EEE64335.1| hypothetical protein OsJ_19175 [Oryza sativa Japonica Group]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 95/111 (85%)

Query: 1   MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR 60
           +S  SP +APPSSASSLPKEQSQVELELR+L+ALE YPP KL+GIHRHFV+YGLME+LR+
Sbjct: 12  ISAQSPAQAPPSSASSLPKEQSQVELELRVLQALEFYPPSKLKGIHRHFVIYGLMEYLRK 71

Query: 61  RFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
             DR F+ DEVLQLLDRF+NL+MLKP+D+E +     E+F LP+S+F+K+E
Sbjct: 72  SLDRQFSADEVLQLLDRFFNLEMLKPEDDEKDNFTQGEEFSLPESFFNKDE 122

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195638382|gb|ACG38659.1| hypothetical protein [Zea mays]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 77/107 (71%), Positives = 92/107 (85%)

Query: 5   SPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDR 64
           SP +APPSSASSLPKEQSQVELELRLL+ALE YPP KL+GIHRHFVLYGLME+LR+  DR
Sbjct: 10  SPAQAPPSSASSLPKEQSQVELELRLLQALEFYPPSKLKGIHRHFVLYGLMEYLRKSLDR 69

Query: 65  HFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
            F+ DEVLQLLDRF+NL+MLKP+D+E +     E+F LP+S+ +KEE
Sbjct: 70  QFSSDEVLQLLDRFFNLEMLKPEDDEKDNFRQGEEFSLPESFLNKEE 116

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194701320|gb|ACF84744.1| unknown [Zea mays] gi|195606180|gb|ACG24920.1| hypothetical protein [Zea mays] gi|413946026|gb|AFW78675.1| hypothetical protein ZEAMMB73_715733 [Zea mays] gi|413946027|gb|AFW78676.1| hypothetical protein ZEAMMB73_715733 [Zea mays]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 92/107 (85%)

Query: 5   SPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDR 64
           SP +APPSSASSLPKEQSQVELELRLL+ALE YPP KL+G+HRHFVLYGLME+LR+  DR
Sbjct: 10  SPAQAPPSSASSLPKEQSQVELELRLLQALEFYPPSKLKGVHRHFVLYGLMEYLRKSLDR 69

Query: 65  HFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
            F+ DEVLQLLDRF+NL+MLKP+D+E +     E+F LP+S+ +KEE
Sbjct: 70  QFSSDEVLQLLDRFFNLEMLKPEDDEKDNFRQGEEFSLPESFLNKEE 116

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487531|ref|XP_003614053.1| hypothetical protein MTR_5g044200 [Medicago truncatula] gi|355515388|gb|AES97011.1| hypothetical protein MTR_5g044200 [Medicago truncatula]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 101/112 (90%)

Query: 1   MSVHSPCKAPPSSASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR 60
           MSVHSPCK PPSSASSL K+  QVELELRLLEALE+YPP+KL+G+HRHFVLYGLME+L+R
Sbjct: 20  MSVHSPCKPPPSSASSLNKDIDQVELELRLLEALEIYPPLKLQGVHRHFVLYGLMEYLKR 79

Query: 61  RFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEES 112
            FDRHF  DEVL+LL RFYN++MLK DD+E+++LN+EEDF LPQS+F K+ES
Sbjct: 80  SFDRHFTADEVLELLGRFYNIEMLKSDDDEIDVLNNEEDFSLPQSFFSKDES 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2197955	133	AT1G26470 "AT1G26470" [Arabido	0.991	0.834	0.621	8.5e-33
DICTYBASE|DDB_G0284641	104	DDB_G0284641 [Dictyostelium di	0.535	0.576	0.328	0.00035

TAIR|locus:2197955 AT1G26470 "AT1G26470" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 69/111 (62%), Positives = 78/111 (70%)

Query:     1 MSVHXXXXXXXXXXXXXXXEQSQVXXXXXXXXXXXVYPPVKLRGIHRHFVLYGLMEFLRR 60
             +SVH               EQSQV           +YPPVKLRGIHRHFVLYGLME+L R
Sbjct:    22 LSVHSPCKALPSSASSLSKEQSQVELELRLLEALEIYPPVKLRGIHRHFVLYGLMEYLGR 81

Query:    61 RFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCLPQSYFDKEE 111
              FDR F  DEVLQLLDRFYN++MLK DDE+++ILNHEEDF LPQS+FDKEE
Sbjct:    82 SFDRPFTADEVLQLLDRFYNIEMLKSDDEDIDILNHEEDFTLPQSFFDKEE 132

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

DICTYBASE|DDB_G0284641 DDB_G0284641 [Dictyostelium discoideum (taxid:44689)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query:    44 GIHRHFVLYGLMEFLRRRF-DRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEEDFCL 102
             G+++HF +      L  +   ++F+ D+V + +  FYNLD L  DD+ ++  + +E F L
Sbjct:    33 GVNKHFSILNCTIILAEKLPQKNFSYDQVYKEISEFYNLDEL--DDDVIDE-DEKEVFIL 89

Query:   103 PQSY 106
             P SY
Sbjct:    90 PDSY 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.144   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112        86   0.00091  102 3  11 22  0.40    29
                                                     29  0.47    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  103 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.31u 0.19s 10.50t   Elapsed:  00:00:01
  Total cpu time:  10.31u 0.19s 10.50t   Elapsed:  00:00:01
  Start:  Fri May 10 02:06:23 2013   End:  Fri May 10 02:06:24 2013

GO:0043189 "H4/H2A histone acetyltransferase complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0010024001 hypothetical protein (129 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam07904	83	pfam07904, Eaf7, Chromatin modification-related pr	2e-24

>gnl|CDD|219632 pfam07904, Eaf7, Chromatin modification-related protein EAF7

 Score = 88.1 bits (219), Expect = 2e-24
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 25  ELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRR-RFDRHFAPDEVLQLLDRFYNLDM 83
           E E+RL +A+E + PV   GIH+HF +  + E LR    DRHF+ D++   L   YNLD 
Sbjct: 1   EQEIRLFKAIEGFKPV---GIHKHFRMICISERLRSSGLDRHFSADDIWDKLGTLYNLDA 57

Query: 84  LKPDDEEMEILNHEEDFCLPQSYFDK 109
           L   +  ++  N EEDF LP+  + +
Sbjct: 58  LDELENSLDFPNDEEDFTLPEDEYGE 83

The S. cerevisiae member of this family is part of NuA4, the only essential histone acetyltransferase complex in Saccharomyces cerevisiae involved in global histone acetylation. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PF07904	91	Eaf7: Chromatin modification-related protein EAF7;	100.0
KOG4051	214	consensus Uncharacterized conserved protein [Funct	99.89
PF04504	98	DUF573: Protein of unknown function, DUF573; Inter	96.7
PF06374	117	NDUF_C2: NADH-ubiquinone oxidoreductase subunit b1	80.24

>PF07904 Eaf7: Chromatin modification-related protein EAF7; InterPro: IPR012423 The Saccharomyces cerevisiae (Baker's yeast) member of this family P53911 from SWISSPROT is part of NuA4, the only essential histone acetyltransferase complex in S

Probab=100.00  E-value=1.2e-38  Score=220.91  Aligned_cols=82  Identities=34%  Similarity=0.691  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhh-----cCCCCChHHHHHHHHhhcCccCCCCCccccccCCCCC-
Q 033730           25 ELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRR-----FDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEE-   98 (112)
Q Consensus        25 e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~-----~~r~~~~~~IW~kL~t~YnL~~Lde~~E~~~~~~~e~-   98 (112)
                      |+|++||+||++||||   ||||||||+||+++|++.     ++++||+++||+||+|+|||++||+.++..++++.+. 
T Consensus         1 e~Ei~Lf~a~~~~KPv---Gi~KHF~M~~I~~~l~~~~~~~~~~~~~t~~~IW~kL~~~YdL~~lde~E~~~~~~~~~~~   77 (91)
T PF07904_consen    1 EDEIRLFRAMCRYKPV---GIHKHFHMICIVERLNNPGFDPKLNKHFTIDDIWKKLRTLYDLEALDELEDEIPFPNSEDT   77 (91)
T ss_pred             ChHHHHHHHHHhcCCC---ccchHHHHHHHHHHHhccccCCccCCcCCHHHHHHHHHHhcCHHHhcccccccCCcccccc
Confidence            5899999999999999   999999999999999999     9999999999999999999999998555789998877 


Q ss_pred             ---CccCChhhhcc
Q 033730           99 ---DFCLPQSYFDK  109 (112)
Q Consensus        99 ---dF~LP~~e~~~  109 (112)
                         ||+||+++||+
T Consensus        78 ~~~eF~LP~~~~ge   91 (91)
T PF07904_consen   78 QYREFSLPEDEYGE   91 (91)
T ss_pred             CCCCCcCCHHHhcc
Confidence               99999999985

cerevisiae involved in global histone acetylation []. ; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0043189 H4/H2A histone acetyltransferase complex

>KOG4051 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=6.3e-24  Score=167.01  Aligned_cols=85  Identities=28%  Similarity=0.371  Sum_probs=80.8

Q ss_pred             cccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhhcCccCCCCCccccccCCCCCC-
Q 033730           21 QSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEILNHEED-   99 (112)
Q Consensus        21 ~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~Lde~~E~~~~~~~e~d-   99 (112)
                      .|.+..|++||.||+++|||   |||||||||||+++|++.++|.+++++||++|+|+|+|.+|++ .|..+|++.+++ 
T Consensus        34 ~Ws~~eE~~L~~ai~g~kPv---GiNkhF~mi~I~~~~~k~~~re~pse~iwn~lnt~y~~~e~~e-lE~~~~pe~e~~p  109 (214)
T KOG4051|consen   34 FWSPLEELGLLHAICGLKPV---GINKHFHMIGIMNEKSKTIPRESPSEDIWNHLNTMYKLKELKE-LELPGFPEEERDP  109 (214)
T ss_pred             cccHHHHHHHHHHHHccCCC---CcccchhhhhhHHHHhhcccccchHHHHHHhhhHHHHHHHHHH-HhcCCCCccccCc
Confidence            47899999999999999999   9999999999999999999999999999999999999999995 888999999988 


Q ss_pred             ccCChhhhcc
Q 033730          100 FCLPQSYFDK  109 (112)
Q Consensus       100 F~LP~~e~~~  109 (112)
                      |.||...+++
T Consensus       110 ~~l~~~~ik~  119 (214)
T KOG4051|consen  110 KDLPEPDIKE  119 (214)
T ss_pred             cccccccHHH
Confidence            9999887764

>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins

Probab=96.70  E-value=0.0029  Score=44.25  Aligned_cols=66  Identities=14%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             CcccccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhh---cCccCCC
Q 033730           18 PKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRF---YNLDMLK   85 (112)
Q Consensus        18 ~k~~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~---YnL~~Ld   85 (112)
                      ...+|+.|+|+.||+||+.|+=.  .|..-+=.|-++.++++..+..+++..++-+|++++   |+..+..
T Consensus         3 ~qR~WS~eDEi~iL~gl~~~~~~--~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k   71 (98)
T PF04504_consen    3 FQRLWSEEDEIVILQGLIDFRAK--TGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK   71 (98)
T ss_pred             CcCCCCchHHHHHHHHHHHHHHh--cCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence            34689999999999999999533  466555589999999999999999999999998775   5554444

>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14

Probab=80.24  E-value=1.9  Score=31.66  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             HHHHHHHHhhCCCCCCCCchhHHHHHHHHHHH
Q 033730           27 ELRLLEALEVYPPVKLRGIHRHFVLYGLMEFL   58 (112)
Q Consensus        27 E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l   58 (112)
                      =+.|+...+..||+-..|||||+-.++|--.+
T Consensus        37 ~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~   68 (117)
T PF06374_consen   37 CTALLDNAINRRPPLKSGIHRQLLLATIGWFI   68 (117)
T ss_pred             HHHHHHHHHhcCCchhhccHHHHHHHHHHHHH
Confidence            35678888999999669999998877765444

5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	89.62

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=89.62  E-value=2.3  Score=27.27  Aligned_cols=68  Identities=12%  Similarity=0.018  Sum_probs=42.8

Q ss_pred             CCCCCcccccHHHHHHHHHHHhhCCCCCCCCchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHhhcCccCCCCCcccccc
Q 033730           14 ASSLPKEQSQVELELRLLEALEVYPPVKLRGIHRHFVLYGLMEFLRRRFDRHFAPDEVLQLLDRFYNLDMLKPDDEEMEI   93 (112)
Q Consensus        14 ~ss~~k~~~~~e~E~~Lf~a~~~~kPv~~~GihKHF~M~~I~e~l~~~~~r~~~~~~IW~kL~t~YnL~~Lde~~E~~~~   93 (112)
                      .|+..+..||.|+...|-+|+..|. .   |.-..+..|  +++|    ||  |.++|.++-..+-+...+ + .-.+|+
T Consensus         3 ~~~~~~~~WT~eE~k~fe~al~~~p-~---~t~~RW~~I--A~~l----gR--t~~eV~~~y~~L~~d~~~-~-~G~vp~   68 (72)
T 2cqq_A            3 SGSSGAPEWTEEDLSQLTRSMVKFP-G---GTPGRWEKI--AHEL----GR--SVTDVTTKAKQLKDSVTC-S-PGMVSG   68 (72)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHSC-T---TCTTHHHHH--HHHH----TS--CHHHHHHHHHHHHHSCCC-C-SCCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCC-C---CCCcHHHHH--HHHh----CC--CHHHHHHHHHHHHHhcCc-c-CCCCCC
Confidence            3455566899999999999998885 4   544444433  3334    44  888888887776444222 2 344566


Q ss_pred             CC
Q 033730           94 LN   95 (112)
Q Consensus        94 ~~   95 (112)
                      |+
T Consensus        69 P~   70 (72)
T 2cqq_A           69 PS   70 (72)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00