Citrus Sinensis ID: 033753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI
Secondary Structure (PSIPRED)
ccccccHHHHHccccccccccccHHHHHHccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccccccccccccccEccccccEEcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHccccccccccHcHHHHcccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MATFSAITSvifapslkpslsnnviaerTSNLKMAiggwrknrfpslktnrfcvscsakpeTVQKVCEIVRRQlalpaeteltseskfsalgadsldTVHLTLLLSIWLNLI
Flexible Loop (DISEMBL)
matfsaitsvifapslkpslsnNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKfsalgadsldtVHLTLLLSIWLNLI
Low Complexity Region (SEG)
MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHltlllsiwlnlI
Disordered region (IsUnstruct)
*****AITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETEL****KFSALGADSLDTVHLTLLLSIWLNL*
Disordered Region (DISOPRED)
*******************************************************CSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI
Disordered Region (DISEMBL)
MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI
Disordered Region (DISPRO)
*******************************************FPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P93092	136	Acyl carrier protein 1, c	N/A	no	0.848	0.698	0.457	3e-16
P52413	143	Acyl carrier protein 3, c	N/A	no	0.937	0.734	0.458	2e-15
P52411	140	Acyl carrier protein 1, c	N/A	no	0.580	0.464	0.579	3e-15
P52414	139	Acyl carrier protein 4, c	N/A	no	0.580	0.467	0.573	5e-15
Q9SW21	137	Acyl carrier protein 4, c	yes	no	0.625	0.510	0.577	5e-15
P15543	132	Acyl carrier protein 3, c	N/A	no	0.616	0.522	0.549	4e-14
P52412	137	Acyl carrier protein 2, c	N/A	no	0.589	0.481	0.545	4e-13
P25701	136	Acyl carrier protein 2, c	no	no	0.491	0.404	0.6	6e-13
P25702	136	Acyl carrier protein 3, c	no	no	0.607	0.5	0.514	1e-12
P07088	134	Acyl carrier protein SF2,	N/A	no	0.544	0.455	0.491	4e-12

>sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 10/105 (9%)

Query: 3   TFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLK--TNRFCVSCSAKP 60
           T ++I+   F  SL PS        R SNL+      +   F  L+  + RF V C+AKP
Sbjct: 5   TGTSISMASFKASLAPS--------RVSNLRSVSLPIKGKSFAPLRMRSARFVVCCAAKP 56

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           ETV+KVC IV++QLALP ++ +T ESKF+ LGADSLDTV + + L
Sbjct: 57  ETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGL 101

Carrier of the growing fatty acid chain in fatty acid biosynthesis.
Casuarina glauca (taxid: 3522)

>sp|P52413|ACP3_CUPLA Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 4/109 (3%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNR----FCVSC 56
           MAT +A +S+I   S   SL+   +    S+L+          FPSL+++R    F V C
Sbjct: 1   MATAAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCC 60

Query: 57  SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
            AK ETV +VCEIV++QLALP ++E+   SKFSALGADSLDTV + + L
Sbjct: 61  QAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGL 109

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Cuphea lanceolata (taxid: 3930)

>sp|P52411|ACP1_CUPLA Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 4/69 (5%)

Query: 41  KNRFPSLKTNR----FCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSL 96
           +  FPSLK+++      VSC AKPETV KVC IV++QLALP ++E+   SKFSALGADSL
Sbjct: 37  RKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSL 96

Query: 97  DTVHLTLLL 105
           DTV + + L
Sbjct: 97  DTVEIVMGL 105

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Cuphea lanceolata (taxid: 3930)

>sp|P52414|ACP4_CUPLA Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 3/68 (4%)

Query: 41  KNRFPSLKTNRFC---VSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLD 97
           +  FPSL++++     VSC AKPETV KVC IV++QLALP ++E+   SKFSALGADSLD
Sbjct: 37  RKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLD 96

Query: 98  TVHLTLLL 105
           TV + + L
Sbjct: 97  TVEIVMGL 104

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Cuphea lanceolata (taxid: 3930)

>sp|Q9SW21|ACP4_ARATH Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana GN=ACP4 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 42  NRF-PSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVH 100
            RF  S K+ R  +SC+AK ETVQKV +IV+ QLAL A+  LT+ESKFSALGADSLDTV 
Sbjct: 34  GRFTSSTKSLRLQISCAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVE 93

Query: 101 LTLLLSIWLNL 111
           + + L    N+
Sbjct: 94  IVMALEEKFNI 104

Carrier of the growing fatty acid chain in fatty acid biosynthesis that plays a major role in the biosynthesis of fatty acids in leaves. Required for the biosynthesis of chloroplast photosynthetic membrane lipids such as monogalactosyldiacylglycerol, digalactosyldiacylglycerol and phosphatidylglycerol. Is essential for the biosynthesis of the cuticular wax and cutin polymers in leaves, and for the establishment of systemic acquired resistance (SAR).

Arabidopsis thaliana (taxid: 3702)

>sp|P15543|ACP3_HORVU Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 37  GGWRKNRFPSLKT--NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGAD 94
           G  R N F  L+    RF V CSAK +TV+KVCEIV++QLA+P  TE+   +KFS LGAD
Sbjct: 27  GARRGNAFLRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGAD 86

Query: 95  SLDTVHLTLLL 105
           SLDTV + + L
Sbjct: 87  SLDTVEIVMGL 97

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P52412|ACP2_CUPLA Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 40  RKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTV 99
           RK+ F    +    V+C AKPETV KVC IV++QLALP +++++  SKFSALGADSLDTV
Sbjct: 37  RKSFFSRRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTV 96

Query: 100 HLTLLL 105
            + + L
Sbjct: 97  EIVMGL 102

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Cuphea lanceolata (taxid: 3930)

>sp|P25701|ACP2_ARATH Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=ACP2 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 51  RFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           R  VSC+AKPETV KVC +VR+QL+L    E+T+ +KF+ALGADSLDTV + + L
Sbjct: 47  RLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGL 101

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|P25702|ACP3_ARATH Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana GN=ACP3 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 2/70 (2%)

Query: 38  GWRKNRFPSLKT--NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADS 95
           G R N   +L+    R  V C+AKPETV KVC +VR+QL+L    E+T+ +KF+ALGADS
Sbjct: 32  GSRSNLSFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADS 91

Query: 96  LDTVHLTLLL 105
           LDTV + + L
Sbjct: 92  LDTVEIVMGL 101

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|P07088|ACP_BRACM Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 47/61 (77%)

Query: 51  RFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLN 110
           RF +SC+AKPETV+KV +IV++QL+L  + ++ +E+KF+ LGADSLDTV + + L    +
Sbjct: 46  RFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFD 105

Query: 111 L 111
           +
Sbjct: 106 I 106

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Brassica campestris (taxid: 3711)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
225425224	139	PREDICTED: acyl carrier protein 4, chlor	0.919	0.741	0.657	4e-28
356527612	142	PREDICTED: acyl carrier protein 1, chlor	0.928	0.732	0.566	1e-23
255540085	137	acyl carrier protein, putative [Ricinus	0.919	0.751	0.561	1e-21
224119790	138	predicted protein [Populus trichocarpa]	0.955	0.775	0.553	4e-21
357520563	137	Acyl carrier protein [Medicago truncatul	0.973	0.795	0.522	2e-20
388516599	136	unknown [Lotus japonicus]	0.901	0.742	0.547	1e-19
356513457	143	PREDICTED: acyl carrier protein 4, chlor	0.928	0.727	0.532	2e-19
255630845	131	unknown [Glycine max]	0.928	0.793	0.532	2e-19
357520565	139	Acyl carrier protein [Medicago truncatul	0.982	0.791	0.508	3e-19
284808851	140	acyl carrier protein 4 [Arachis hypogaea	0.848	0.678	0.530	4e-19

>gi|225425224|ref|XP_002267614.1| PREDICTED: acyl carrier protein 4, chloroplastic [Vitis vinifera] gi|296088168|emb|CBI35660.3| unnamed protein product [Vitis vinifera]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKP 60
           MA  SA TSV F  SLK  L +  I  + S+LKM   GW K+ FPSL+T+RF VSCSAKP
Sbjct: 1   MAAVSA-TSVTFGSSLKL-LKSRQITGKASSLKMVTVGWTKSGFPSLRTSRFRVSCSAKP 58

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           ETVQKVCEIV++QLALPAE+ELT ESKF+ALGADSLDTV + + L
Sbjct: 59  ETVQKVCEIVKKQLALPAESELTPESKFAALGADSLDTVEIVMSL 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527612|ref|XP_003532402.1| PREDICTED: acyl carrier protein 1, chloroplastic-like [Glycine max]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 2/106 (1%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCV-SCSAK 59
           MA+ SA TS+ F PSLK S   +    +TS+L++   GW +  FPSL+++RFC+ +  A+
Sbjct: 1   MASVSA-TSLSFQPSLKLSTRTSQGCYKTSSLEVVSVGWNRRTFPSLRSSRFCICAVKAQ 59

Query: 60  PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           PETVQKVC IVR+QLALPAE+ELT ++KFSALGADSLDTV + + L
Sbjct: 60  PETVQKVCNIVRKQLALPAESELTPDTKFSALGADSLDTVEIVMGL 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540085|ref|XP_002511107.1| acyl carrier protein, putative [Ricinus communis] gi|223550222|gb|EEF51709.1| acyl carrier protein, putative [Ricinus communis]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKP 60
           MA+ SA + + F P L  S   +++A RTS+  M  G W KN FPSLK +RF +SC+AKP
Sbjct: 1   MASVSA-SCLSFQPLLFHSNKTSLVAGRTSS-NMVSGNWAKNGFPSLKASRFRISCAAKP 58

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           ETV KVC+IVR+QLAL  E +L+ ESKFS LGADSLDTV + + L
Sbjct: 59  ETVDKVCDIVRKQLALAPEIKLSPESKFSELGADSLDTVEIVMEL 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119790|ref|XP_002318163.1| predicted protein [Populus trichocarpa] gi|222858836|gb|EEE96383.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 77/112 (68%), Gaps = 5/112 (4%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNR-FPSLKTNRFCVSCSAK 59
           MAT SA T + F P    S   N  ++  ++LK    GW KN  FPSLK +RF VSC+AK
Sbjct: 1   MATVSA-TCLRFQPLFSQS---NKSSQAAASLKPVSVGWAKNNGFPSLKASRFRVSCAAK 56

Query: 60  PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111
           PETV+KV EIVR+QLAL  ETELT+ESKF+ALGADSLDTV + + L    ++
Sbjct: 57  PETVEKVIEIVRKQLALTPETELTNESKFAALGADSLDTVEIVMALEEEFDI 108

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520563|ref|XP_003630570.1| Acyl carrier protein [Medicago truncatula] gi|355524592|gb|AET05046.1| Acyl carrier protein [Medicago truncatula]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 2/111 (1%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKP 60
           MA+ SA TS+ F PS K S S N ++ RTS+      G  +  FPSL+++RF + C+A+P
Sbjct: 1   MASLSA-TSLTFQPSFKFSTSTNQVSFRTSSFGAISVGCTRRSFPSLRSSRFRI-CAAQP 58

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111
           ETV+KV +IVR+QLAL  ET+LT E+KFS LGADSLDTV + + L    NL
Sbjct: 59  ETVEKVSKIVRKQLALTPETKLTPETKFSELGADSLDTVEIVMGLEEEFNL 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516599|gb|AFK46361.1| unknown [Lotus japonicus]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 5/106 (4%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCV-SCSAK 59
           MA+ SA TSV   PS K  LS+ V + R S L+    GW   RFPSL+++RF + +  A+
Sbjct: 1   MASVSA-TSVSLQPSFK--LSSQV-SSRISGLRAVSVGWTTRRFPSLRSSRFRICAVQAQ 56

Query: 60  PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           PET++KVC+IVR+QLAL  E+ELT E+KFSALGADSLDTV + + L
Sbjct: 57  PETMEKVCKIVRKQLALAPESELTPETKFSALGADSLDTVEIVMGL 102

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513457|ref|XP_003525430.1| PREDICTED: acyl carrier protein 4, chloroplastic [Glycine max]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 75/107 (70%), Gaps = 3/107 (2%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIA-ERTSNLKMAIGGWRKNRFPSLKTNRFCV-SCSA 58
           MA+ SA TS+ F P LK S         +TS+L     GW +  FPSL+++R  + +  A
Sbjct: 1   MASVSA-TSLRFQPFLKLSTRTTTQGCYKTSSLGAVSVGWNRRTFPSLRSSRLRICAVKA 59

Query: 59  KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           +PETVQKVC+IVR+QLALPAE+ELT ++KFSALGADSLDTV + + L
Sbjct: 60  QPETVQKVCDIVRKQLALPAESELTPDTKFSALGADSLDTVEIVMGL 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630845|gb|ACU15785.1| unknown [Glycine max]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 75/107 (70%), Gaps = 3/107 (2%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIA-ERTSNLKMAIGGWRKNRFPSLKTNRFCV-SCSA 58
           MA+ SA TS+ F P LK S         +TS+L     GW +  FPSL+++R  + +  A
Sbjct: 1   MASVSA-TSLRFQPFLKLSTRTTTQGCYKTSSLGAVSVGWNRRTFPSLRSSRLRICAVKA 59

Query: 59  KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           +PETVQKVC+IVR+QLALPAE+ELT ++KFSALGADSLDTV + + L
Sbjct: 60  QPETVQKVCDIVRKQLALPAESELTPDTKFSALGADSLDTVEIVMGL 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520565|ref|XP_003630571.1| Acyl carrier protein [Medicago truncatula] gi|355524593|gb|AET05047.1| Acyl carrier protein [Medicago truncatula] gi|388512039|gb|AFK44081.1| unknown [Medicago truncatula]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 76/112 (67%), Gaps = 2/112 (1%)

Query: 1   MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCV-SCSAK 59
           MA+ SA TS+ F PS K S S N ++ RTS+      G  +  FPSL+++RF + +  A+
Sbjct: 1   MASLSA-TSLTFQPSFKFSTSTNQVSFRTSSFGAISVGCTRRSFPSLRSSRFRICAIQAQ 59

Query: 60  PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111
           PETV+KV +IVR+QLAL  ET+LT E+KFS LGADSLDTV + + L    NL
Sbjct: 60  PETVEKVSKIVRKQLALTPETKLTPETKFSELGADSLDTVEIVMGLEEEFNL 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284808851|gb|ADB94673.1| acyl carrier protein 4 [Arachis hypogaea] gi|284808861|gb|ADB94678.1| acyl carrier protein 4 [Arachis hypogaea] gi|288551670|gb|ADC53305.1| acyl carrier protein [Arachis hypogaea]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 70/98 (71%), Gaps = 3/98 (3%)

Query: 8   TSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVC 67
           TS+ FA SL  SLS+    + +S       GW +  FPSL+++RF + C+A+PETV KVC
Sbjct: 9   TSLRFAQSL--SLSSKTTLQASSRFGAVSVGWSRRSFPSLRSSRFRI-CAAQPETVDKVC 65

Query: 68  EIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLL 105
           EIVR+QLALP E++LT E+ F+ALGADSLDTV + + L
Sbjct: 66  EIVRKQLALPPESQLTPETTFTALGADSLDTVEIVMGL 103

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2199461	136	ACP2 "AT1G54580" [Arabidopsis	0.830	0.683	0.421	7.1e-13
TAIR|locus:2199517	136	ACP3 "acyl carrier protein 3"	0.553	0.455	0.546	8.2e-12
TAIR|locus:2181216	139	ACP5 "AT5G27200" [Arabidopsis	0.767	0.618	0.418	1.3e-11
TAIR|locus:2114820	137	ACP1 "acyl carrier protein 1"	0.482	0.394	0.518	3.2e-10

TAIR|locus:2199461 ACP2 "AT1G54580" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 40/95 (42%), Positives = 57/95 (60%)

Query:     7 ITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKT--NRFCVSCSAKPETVQ 64
             + S+  + S+        +A   S +K    G R +   +L+    R  VSC+AKPETV 
Sbjct:     1 MASIAASASISLQARPRQLAIAASQVKSFSNGRRSSLSFNLRQLPTRLTVSCAAKPETVD 60

Query:    65 KVCEIVRRQLALPAETELTSESKFSALGADSLDTV 99
             KVC +VR+QL+L    E+T+ +KF+ALGADSLDTV
Sbjct:    61 KVCAVVRKQLSLKEADEITAATKFAALGADSLDTV 95

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=IDA

TAIR|locus:2199517 ACP3 "acyl carrier protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 35/64 (54%), Positives = 45/64 (70%)

Query:    38 GWRKNRFPSLKT--NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADS 95
             G R N   +L+    R  V C+AKPETV KVC +VR+QL+L    E+T+ +KF+ALGADS
Sbjct:    32 GSRSNLSFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADS 91

Query:    96 LDTV 99
             LDTV
Sbjct:    92 LDTV 95

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=ISS

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2181216 ACP5 "AT5G27200" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 41/98 (41%), Positives = 63/98 (64%)

Query:     2 ATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPE 61
             A FSA T+  F  + + ++ NN   E+T+NL  ++    +   P+    R  VSC+ K E
Sbjct:    13 APFSA-TTTRFCLNKQATIFNN---EKTNNLSFSL----RRLMPA----RLAVSCAVKQE 60

Query:    62 TVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTV 99
             TV+KV EIV++QL+L  + ++T+ +KF+ LGADSLDTV
Sbjct:    61 TVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADSLDTV 98

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2114820 ACP1 "acyl carrier protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 28/54 (51%), Positives = 42/54 (77%)

Query:    46 SLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTV 99
             S+ + R  VSC+AK ET++KV  IV++QL+L  + ++ +E+KF+ LGADSLDTV
Sbjct:    44 SIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTV 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.127   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       101   0.00091  102 3  11 22  0.38    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  496 (53 KB)
  Total size of DFA:  96 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.70u 0.10s 10.80t   Elapsed:  00:00:00
  Total cpu time:  10.70u 0.10s 10.80t   Elapsed:  00:00:00
  Start:  Mon May 20 15:02:06 2013   End:  Mon May 20 15:02:06 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00006175001	RecName- Full=Acyl carrier protein;; Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) (139 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00007299001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (431 aa)	•					•	•		0.845
	GSVIVG00024012001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (392 aa)	•			•		•	•		0.783
	GSVIVG00016391001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)	•						•		0.577
	GSVIVG00003432001	SubName- Full=Chromosome undetermined scaffold_143, whole genome shotgun sequence; (463 aa)	•						•		0.569
	GSVIVG00025980001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (418 aa)	•						•		0.563
	GSVIVG00034037001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (502 aa)	•						•		0.489
	GSVIVG00009555001	SubName- Full=Chromosome chr12 scaffold_238, whole genome shotgun sequence; (211 aa)	•						•		0.488
	GSVIVG00034687001	RecName- Full=Acyl-[acyl-carrier protein] desaturase; EC=1.14.19.2;; Converts stearoyl-ACP to o [...] (392 aa)							•		0.483
	GSVIVG00034684001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence;; Converts stearoyl-AC [...] (387 aa)							•		0.483
	GSVIVG00034679001	RecName- Full=Acyl-[acyl-carrier protein] desaturase; EC=1.14.19.2;; Converts stearoyl-ACP to o [...] (352 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
TIGR00517	77	TIGR00517, acyl_carrier, acyl carrier protein	7e-07
PRK00982	78	PRK00982, acpP, acyl carrier protein; Provisional	1e-06
CHL00124	82	CHL00124, acpP, acyl carrier protein; Validated	7e-06

>gnl|CDD|213536 TIGR00517, acyl_carrier, acyl carrier protein

 Score = 43.2 bits (102), Expect = 7e-07
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLL 105
           E  +KV  I++ QL +  E ++T++++F   LGADSLDTV L + L
Sbjct: 3   EIFEKVKAIIKEQLNV-DEDQITTDARFVEDLGADSLDTVELVMAL 47

This small protein has phosphopantetheine covalently bound to a Ser residue. It acts as a carrier of the growing fatty acid chain, which is bound to the prosthetic group, during fatty acid biosynthesis. Homologous phosphopantetheine-binding domains are found in longer proteins. Acyl carrier proteins scoring above the noise cutoff but below the trusted cutoff may be specialized versions. These include those involved in mycolic acid biosynthesis in the Mycobacteria, lipid A biosynthesis in Rhizobium, actinorhodin polyketide synthesis in Streptomyces coelicolor, etc. This protein is not found in the Archaea.Gene name acpP.S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 77

>gnl|CDD|179197 PRK00982, acpP, acyl carrier protein; Provisional

 Score = 42.5 bits (101), Expect = 1e-06
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 59  KPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
             E  +KV +I+  QL +  E E+T E+ F   LGADSLDTV L
Sbjct: 1   MSEIFEKVKKIIVEQLGVDEE-EVTPEASFVDDLGADSLDTVEL 43

Length = 78

>gnl|CDD|177047 CHL00124, acpP, acyl carrier protein; Validated

 Score = 40.8 bits (96), Expect = 7e-06
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 59  KPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           K +  +KV  IV  QL +  ++E+T ++ F+  LGADSLD V L
Sbjct: 3   KNDIFEKVQSIVAEQLGI-EKSEVTLDANFTRDLGADSLDVVEL 45

Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG1748	131	consensus Acyl carrier protein/NADH-ubiquinone oxi	99.67
PRK07117	79	acyl carrier protein; Validated	99.59
PRK05828	84	acyl carrier protein; Validated	99.5
PRK07639	86	acyl carrier protein; Provisional	99.49
PRK05350	82	acyl carrier protein; Provisional	99.47
PRK12449	80	acyl carrier protein; Provisional	99.46
PRK05883	91	acyl carrier protein; Validated	99.45
PRK08172	82	putative acyl carrier protein IacP; Validated	99.43
PRK06508	93	acyl carrier protein; Provisional	99.43
CHL00124	82	acpP acyl carrier protein; Validated	99.42
PTZ00171	148	acyl carrier protein; Provisional	99.36
TIGR00517	77	acyl_carrier acyl carrier protein. S (Ser) at posi	99.36
COG0236	80	AcpP Acyl carrier protein [Lipid metabolism / Seco	99.34
PRK09184	89	acyl carrier protein; Provisional	99.3
PRK00982	78	acpP acyl carrier protein; Provisional	99.16
PRK07081	83	acyl carrier protein; Provisional	99.13
PF00550	67	PP-binding: Phosphopantetheine attachment site; In	99.11
PRK05087	78	D-alanine--poly(phosphoribitol) ligase subunit 2;	98.99
TIGR01688	73	dltC D-alanine--poly(phosphoribitol) ligase, subun	98.62
PF14573	96	PP-binding_2: Acyl-carrier; PDB: 3CE7_A.	98.21
smart00823	86	PKS_PP Phosphopantetheine attachment site. Phospho	97.99
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	97.96
PRK06060	705	acyl-CoA synthetase; Validated	97.47
PF07377	111	DUF1493: Protein of unknown function (DUF1493); In	97.26
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	96.95
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	96.63
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	96.6
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	96.59
PRK12467	3956	peptide synthase; Provisional	96.16
PRK05691	4334	peptide synthase; Validated	95.45
PRK12467	3956	peptide synthase; Provisional	95.17
PRK12316	5163	peptide synthase; Provisional	95.14
COG3433	74	Aryl carrier domain [Secondary metabolites biosynt	95.12
PRK05691	4334	peptide synthase; Validated	94.99
PRK12316	5163	peptide synthase; Provisional	94.47
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	91.42

>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=2.6e-17  Score=119.53  Aligned_cols=56  Identities=36%  Similarity=0.550  Sum_probs=53.4

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      |.+++++.++|.++|+.+..+++ +.++++++|. |||+||||+|||||+|||||||.
T Consensus        48 ~l~k~~v~~RVl~VVk~~dki~~-~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiE  104 (131)
T KOG1748|consen   48 CLAKKEVVDRVLDVVKKFDKIDP-SKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIE  104 (131)
T ss_pred             hhhHHHHHHHHHHHHHHhhcCCc-cccchhhHHHHhcCCcccccchhhhhhHHHhCCc
Confidence            99999999999999999999987 6899999997 99999999999999999999984

>PRK07117 acyl carrier protein; Validated

Probab=99.59  E-value=2.1e-15  Score=100.58  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=51.2

Q ss_pred             CChHHHHHHHHHHHHHhc-CCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQL-ALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l-~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++|+++|+++|++++ ++++ ++|+++++|.|||+||||++||++++|++|||.
T Consensus         1 M~~~ei~~~v~~ii~e~~p~i~~-~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~   56 (79)
T PRK07117          1 MDKQRIFDILVRHIREVLPDLDQ-HQFQPEDSLVDLGANSMDRAEIVIMTLESLSLK   56 (79)
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCH-HHCCCCCChhhcCCChHHHHHHHHHHHHHHCCc
Confidence            367899999999999999 6886 799999999999999999999999999999983

>PRK05828 acyl carrier protein; Validated

Probab=99.50  E-value=4.4e-14  Score=95.29  Aligned_cols=55  Identities=24%  Similarity=0.312  Sum_probs=50.6

Q ss_pred             CChHHHHHHHHHHHHH-hcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRR-QLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~-~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++||+++|++|+++ +++++. +.++++++|.|||+||||++||+++||++|||.
T Consensus         1 m~~~eI~~~i~~ii~e~~~~~~~-d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~   56 (84)
T PRK05828          1 MQEMEILLKIKEIAKKKNFAVTL-DESNINKPYRELKIDSLDMFSIIVSLESEFNIE   56 (84)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCc-ccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCC
Confidence            4688999999999998 688876 699999999999999999999999999999984

>PRK07639 acyl carrier protein; Provisional

Probab=99.49  E-value=8.3e-14  Score=93.87  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++++++|++||++++++++.++++++++|. |||+||+|++||+++||++|||.
T Consensus         1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~   57 (86)
T PRK07639          1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLC   57 (86)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCc
Confidence            467899999999999999987546899999997 99999999999999999999984

>PRK05350 acyl carrier protein; Provisional

Probab=99.47  E-value=7.3e-14  Score=92.41  Aligned_cols=55  Identities=20%  Similarity=0.321  Sum_probs=51.2

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++++++|+++|++++++++ .+|+++++|. |||+|||+++||+++||++|||.
T Consensus         2 m~~~~i~~~v~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~   57 (82)
T PRK05350          2 MTREEILERLRAILVELFEIDP-EDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKK   57 (82)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCH-HHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCc
Confidence            4688999999999999999987 7999999985 99999999999999999999984

>PRK12449 acyl carrier protein; Provisional

Probab=99.46  E-value=1.3e-13  Score=90.08  Aligned_cols=55  Identities=13%  Similarity=0.308  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++++++++ ..++++++|. |||+||+++++|+++||++|||.
T Consensus         1 m~~~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~   56 (80)
T PRK12449          1 MTREEIFERLINLIQKQRSYLS-LAITEQTHLKDDLAVDSIELVEFIINVEDEFHIA   56 (80)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCc-cccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCC
Confidence            3678999999999999999986 6999999995 99999999999999999999984

>PRK05883 acyl carrier protein; Validated

Probab=99.45  E-value=1.8e-13  Score=93.14  Aligned_cols=56  Identities=18%  Similarity=0.255  Sum_probs=52.5

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      |.++.+|.++|+++|++++++++ +.|+++++|. +||+|||++++++++||++|||.
T Consensus         9 ~~~~~~I~~~l~~iia~~l~v~~-~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~   65 (91)
T PRK05883          9 TSSPSTVSATLLSILRDDLNVDL-TRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVA   65 (91)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCh-hhCCCCCchhhccCCChHHHHHHHHHHHHHHCCC
Confidence            66788999999999999999987 7999999996 99999999999999999999984

>PRK08172 putative acyl carrier protein IacP; Validated

Probab=99.43  E-value=1.6e-13  Score=91.87  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++|++++++++++++ ++|+++++|. |||+|||++++|+++||++|||.
T Consensus         4 ~i~~~v~~iiae~l~v~~-~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~   55 (82)
T PRK08172          4 DIEARVKKVITSCIAVDV-DSINGQTHLVEDLYADSLDLIDIVFGLSEEFDIS   55 (82)
T ss_pred             cHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            799999999999999997 7999999996 99999999999999999999984

>PRK06508 acyl carrier protein; Provisional

Probab=99.43  E-value=2.1e-13  Score=93.65  Aligned_cols=52  Identities=27%  Similarity=0.422  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ..++++|++||++++++++ .+|+++++|. |||+||||++||+++||++|||.
T Consensus         2 ~~i~ekv~~Ilae~~~vd~-~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~   54 (93)
T PRK06508          2 SSTFDKVADIIAETSDIPR-DTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIK   54 (93)
T ss_pred             hHHHHHHHHHHHHHhCCCH-HHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCc
Confidence            4689999999999999987 7999999996 99999999999999999999984

>CHL00124 acpP acyl carrier protein; Validated

Probab=99.42  E-value=2.6e-13  Score=89.09  Aligned_cols=55  Identities=35%  Similarity=0.518  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++.+++++ ..++++++|. |||+||++++||+++||++|||.
T Consensus         1 M~~~~i~~~l~~ii~~~~~~~~-~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~   56 (82)
T CHL00124          1 MTKNDIFEKVQSIVAEQLGIEK-SEVTLDANFTRDLGADSLDVVELVMAIEEKFDIE   56 (82)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCc
Confidence            4678999999999999999986 6899999997 69999999999999999999984

>PTZ00171 acyl carrier protein; Provisional

Probab=99.36  E-value=1.2e-12  Score=96.57  Aligned_cols=56  Identities=34%  Similarity=0.476  Sum_probs=52.2

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      -+++++++++|++++++.+++++ ++|+++++|. |||+||||++||+++||++|||.
T Consensus        65 ~~~~~~v~~~l~eiiae~l~vd~-~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~  121 (148)
T PTZ00171         65 LLSKEDVLTRVKKVVKNFEKVDA-SKITPESNFVKDLGADSLDVVELLIAIEQEFNLT  121 (148)
T ss_pred             ccCHHHHHHHHHHHHHHHhCCCH-hhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCc
Confidence            45789999999999999999986 6999999996 99999999999999999999984

>TIGR00517 acyl_carrier acyl carrier protein

Probab=99.36  E-value=1.2e-12  Score=85.00  Aligned_cols=52  Identities=37%  Similarity=0.540  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .++.++|++++++.+++++ .+++++++|. |||+||++++||+++||++|||.
T Consensus         2 ~~i~~~l~~il~~~~~~~~-~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~   54 (77)
T TIGR00517         2 QEIFEKVKAIIKEQLNVDE-DQVTPDASFVEDLGADSLDTVELVMALEEEFDIE   54 (77)
T ss_pred             hHHHHHHHHHHHHHHCCCH-HHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCC
Confidence            5789999999999999986 6999999996 99999999999999999999984

S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.

>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.34  E-value=2.6e-12  Score=84.63  Aligned_cols=53  Identities=32%  Similarity=0.455  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.+.++|++++.++++.+. .++++++.|. |||+||||++||+++||++|||.
T Consensus         3 ~~~~~~~i~~ii~e~l~~~~-~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~   56 (80)
T COG0236           3 MEAIEERVKDIIAEQLGVDE-EEITTEASFVEDLGLDSLDLVELVMALEEEFGIE   56 (80)
T ss_pred             hHHHHHHHHHHHHHHhCCch-hhcCcccccccccCccHHHHHHHHHHHHHHHCCc
Confidence            45699999999999999985 6999999997 89999999999999999999984

>PRK09184 acyl carrier protein; Provisional

Probab=99.30  E-value=3.6e-12  Score=86.76  Aligned_cols=54  Identities=19%  Similarity=0.406  Sum_probs=48.3

Q ss_pred             ChHHHHHHHHHHHHHhcCC---CCCCCCCCCCCc-c-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLAL---PAETELTSESKF-S-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l---~~~~~It~es~f-~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ..++++++|+++|.+++++   ++ ++|+++++| . |||+||||++||++++|++|||.
T Consensus         3 ~~~~l~~~l~~~I~e~l~~~~i~~-~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~   61 (89)
T PRK09184          3 SMTALERELAELIVEELNLEDVQP-ESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQ   61 (89)
T ss_pred             hHHHHHHHHHHHHHHHHCCCCCCH-HHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCc
Confidence            3468999999999999985   55 699999997 4 79999999999999999999983

>PRK00982 acpP acyl carrier protein; Provisional

Probab=99.16  E-value=5.1e-11  Score=77.20  Aligned_cols=52  Identities=40%  Similarity=0.542  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .++.++|++++++.+++++ ..++++++| .|||+||++.++|+..+|++||+.
T Consensus         2 ~~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~   54 (78)
T PRK00982          2 SEIFEKVKKIIVEQLGVDE-EEVTPEASFVDDLGADSLDTVELVMALEEEFGIE   54 (78)
T ss_pred             hHHHHHHHHHHHHHHCCCH-HHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            3688999999999999986 799999999 599999999999999999999984

>PRK07081 acyl carrier protein; Provisional

Probab=99.13  E-value=6.6e-11  Score=79.09  Aligned_cols=49  Identities=20%  Similarity=0.349  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhcCC--CCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           63 VQKVCEIVRRQLAL--PAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        63 ~ekV~eIl~~~l~l--~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .++|+++|.+.+++  ++ +.++++++|.|||+||+++++|++.||++|||.
T Consensus         2 ~~~i~~ii~~~~~~~~~~-~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~   52 (83)
T PRK07081          2 KNTIRTILKKVAKLEVPI-DSIADDADLYEAGLSSLATVQLMLAIEDAFDIE   52 (83)
T ss_pred             hHHHHHHHHHHHcCCCCH-HhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCc
Confidence            57899999998544  43 689999999999999999999999999999984

>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []

Probab=99.11  E-value=1.7e-10  Score=71.79  Aligned_cols=48  Identities=27%  Similarity=0.428  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        64 ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++|++++++.++++. .+++++++|.++|+||++.++++..+|++||+.
T Consensus         1 e~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~   48 (67)
T PF00550_consen    1 EQLREIIAEVLGVDP-EEIDPDTDFFDLGLDSLDAIELVSELEEEFGIK   48 (67)
T ss_dssp             HHHHHHHHHHHTSSG-GCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHHCcCH-hhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCC
Confidence            578999999999876 799999999999999999999999999999973

The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....

>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated

Probab=98.99  E-value=7.8e-10  Score=73.57  Aligned_cols=51  Identities=16%  Similarity=0.116  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCccc-cCCchhhHHHHHHHHHHHcCCC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f~D-LG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++.++|+++|.+.++.++ .+++++++|.+ .++||++++||+++||++|||.
T Consensus         2 ~i~~~I~~iL~~~~~~~~-~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~   53 (78)
T PRK05087          2 DFKEQVLDILEELTGEDI-VSENMDEDLFEEGILDSMGTVELLVELENRFDIE   53 (78)
T ss_pred             cHHHHHHHHHHHHhCCCh-hccCCccchhhccCcchHHHHHHHHHHHHHhCCc
Confidence            478999999999998875 58899999984 4589999999999999999984

>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2

Probab=98.62  E-value=4.3e-08  Score=64.94  Aligned_cols=48  Identities=19%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccccCC-chhhHHHHHHHHHHHcCCC
Q 033753           64 QKVCEIVRRQLALPAETELTSESKFSALGA-DSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        64 ekV~eIl~~~l~l~~~~~It~es~f~DLG~-DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++|++||.+..+.+. ....++++|.+.|+ ||+++|+++.+||++|||.
T Consensus         2 e~i~eIL~~i~~~~~-~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~   50 (73)
T TIGR01688         2 NGVLDILAEVTGSDD-VKENPDLELFEEGLLDSFGTVQLLLEIQNQFDID   50 (73)
T ss_pred             hHHHHHHHHHhcCcc-cccCccHHHHHccchhHHHHHHHHHHHHHHhCCc
Confidence            678999999877653 35688999999998 9999999999999999984

This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.

>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A

Probab=98.21  E-value=2.6e-06  Score=58.97  Aligned_cols=50  Identities=24%  Similarity=0.283  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCcc------ccCCchhhHHHHHHHHHHHcCCC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKFS------ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f~------DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+-++|..++++.+...  .++++.++|.      ++.|||||+||+++.+|++|+|.
T Consensus        10 av~~~i~g~~kkyl~~~--~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~   65 (96)
T PF14573_consen   10 AVTEYILGMLKKYLSEG--EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVT   65 (96)
T ss_dssp             HHHHHHHHHHHTTB-TT------TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHcCCC--CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcc
Confidence            56788999999888654  5888888872      78999999999999999999984

>smart00823 PKS_PP Phosphopantetheine attachment site

Probab=97.99  E-value=2.7e-05  Score=47.92  Aligned_cols=52  Identities=29%  Similarity=0.272  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL  111 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI  111 (112)
                      ..+.+.+..++...++......++.++.|.++|+||+..+++...++++||+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~   62 (86)
T smart00823       11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGL   62 (86)
T ss_pred             HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCC
Confidence            3467778888888887765323588999999999999999999999999986

Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=97.96  E-value=9.5e-06  Score=80.28  Aligned_cols=51  Identities=22%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcC
Q 033753           59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLN  110 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFg  110 (112)
                      ..+++++|++++.++++++. +.++++++|. |||+||++.+||++.||++|+
T Consensus      1305 ~~~v~~~vl~vvae~tgyp~-e~L~~d~~le~DLGiDSI~~vEil~~le~~f~ 1356 (2582)
T TIGR02813      1305 LIQIQNVMLEVVADKTGYPT-EMLELEMDMEADLGIDSIKRVEILGTVQDTLP 1356 (2582)
T ss_pred             HHHHHHHHHHHHHHHhCCCH-HHcCcccCchhhcCCCHHHHHHHHHHHHHhcC
Confidence            45899999999999999997 7999999997 999999999999999999997

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK06060 acyl-CoA synthetase; Validated

Probab=97.47  E-value=0.00021  Score=61.60  Aligned_cols=52  Identities=31%  Similarity=0.315  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.+.|+++++++++.+..+.|.++..|.|||.|||..+++...|+++||+.
T Consensus       545 ~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~  596 (705)
T PRK06060        545 LVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLR  596 (705)
T ss_pred             HHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCC
Confidence            4567888999999998644679999999999999999999999999999973

>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length

Probab=97.26  E-value=0.00083  Score=46.85  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHhcCCC---CCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCC
Q 033753           60 PETVQKVCEIVRRQLALP---AETELTSESKFS-ALGADSLDTVHLTLLLSIWLNL  111 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~---~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI  111 (112)
                      +++.++|.+.|.+..+..   ....+++++.+. |||+|--|..|++....++|||
T Consensus         2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~V   57 (111)
T PF07377_consen    2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNV   57 (111)
T ss_pred             chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence            467888999999988873   236999999996 9999999999999999999998

Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=96.95  E-value=0.0016  Score=60.02  Aligned_cols=53  Identities=19%  Similarity=0.237  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ..++.+.|.+++.+.++.+. ++++++.+|.+||.|||..++++..|+++||+.
T Consensus       846 ~~~~~~~l~~~~~~vl~~~~-~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~  898 (1389)
T TIGR03443       846 FTETEREIRDLWLELLPNRP-ATISPDDSFFDLGGHSILATRMIFELRKKLNVE  898 (1389)
T ss_pred             CCHHHHHHHHHHHHHhCCCc-cccCcCcchhhcCccHHHHHHHHHHHHHHhCCC
Confidence            34678889999999999864 579999999999999999999999999999863

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=96.63  E-value=0.0014  Score=62.45  Aligned_cols=48  Identities=21%  Similarity=0.330  Sum_probs=42.1

Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           65 KVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        65 kV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.+.|+..+|+.+-..+..+++|.|||+|||.-+||--.||++|+++
T Consensus      2008 dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlV 2055 (2376)
T KOG1202|consen 2008 DLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLV 2055 (2376)
T ss_pred             cHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhcee
Confidence            355667788888766789999999999999999999999999999974

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=96.60  E-value=0.0049  Score=56.09  Aligned_cols=52  Identities=23%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.+.|+++.++.++++   .+..+++|.+||.|||..++|+..|++.||+.
T Consensus       975 ~~~~~e~~l~~~~~~~l~~~---~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~ 1026 (1296)
T PRK10252        975 PKTGTETIIAAAFSSLLGCD---VVDADADFFALGGHSLLAMKLAAQLSRQFARQ 1026 (1296)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCC
Confidence            34577888999999999874   78899999999999999999999999999873

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=96.59  E-value=0.0024  Score=63.90  Aligned_cols=52  Identities=23%  Similarity=0.294  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLN  110 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFg  110 (112)
                      ...++.+.+.+++.++.+.+. +.++++..|. |||+||++.+||+..++++|+
T Consensus      1208 ~~~~~~~~~l~vvae~tgyp~-e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~ 1260 (2582)
T TIGR02813      1208 NDSAIQQVMMEVVAEKTGYPT-EMLELEMDMEADLGIDSIKRVEILGSVQEIIN 1260 (2582)
T ss_pred             chhHHHHHHHHHHHhhccCCh-HhcccccccccccCcchhhhHHhhhhhhhhcc
Confidence            346799999999999999986 7999999997 999999999999999999997

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK12467 peptide synthase; Provisional

Probab=96.16  E-value=0.011  Score=60.47  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=46.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.+++++|.+++|+++   .|..+.+|.+||.|||..+.++..|+++||+.
T Consensus      3602 p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~ 3653 (3956)
T PRK12467       3602 PRSEVEQQLAAIWADVLGVE---QVGVTDNFFELGGDSLLALQVLSRIRQSLGLK 3653 (3956)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCcchhcccchHHHHHHHHHHHHHHhCCC
Confidence            45578899999999999974   58899999999999999999999999999973

>PRK05691 peptide synthase; Validated

Probab=95.45  E-value=0.026  Score=58.29  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=46.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.++++++.+++|+++   .|.++.+|.+||.|||..++++..++++||+.
T Consensus       583 ~~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~  634 (4334)
T PRK05691        583 SGDELQARIAAIWCEQLKVE---QVAADDHFFLLGGNSIAATQVVARLRDELGID  634 (4334)
T ss_pred             CcchHHHHHHHHHHHHhCCC---CCCcCCchhhcccchHHHHHHHHHHHHHhCCc
Confidence            34578889999999999873   78899999999999999999999999999873

>PRK12467 peptide synthase; Provisional

Probab=95.17  E-value=0.037  Score=56.95  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.+.++++.++.++++   .|..+.+|.+||.|||..+.++..++++||+.
T Consensus      1027 p~~~~e~~l~~i~~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~ 1078 (3956)
T PRK12467       1027 PQTELEKRLAAIWADVLKVE---RVGLTDNFFELGGHSLLATQVISRVRQRLGIQ 1078 (3956)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCCchhccCccHHHHHHHHHHHHHhCCC
Confidence            44578889999999999874   68899999999999999999999999999873

>PRK12316 peptide synthase; Provisional

Probab=95.14  E-value=0.038  Score=57.99  Aligned_cols=52  Identities=27%  Similarity=0.334  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++..+++++.++.|+++   .|..+.+|.+||.|||..+.|+..|+++||+.
T Consensus      5069 ~~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~ 5120 (5163)
T PRK12316       5069 PRSELEQQVAAIWAEVLQLE---RVGLDDNFFELGGHSLLAIQVTSRIQLELGLE 5120 (5163)
T ss_pred             CCcHHHHHHHHHHHHHhCCC---CCCCCCChhhccchHHHHHHHHHHHHHHcCCC
Confidence            45678889999999999874   68899999999999999999999999999873

>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.12  E-value=0.023  Score=37.93  Aligned_cols=41  Identities=20%  Similarity=0.206  Sum_probs=31.6

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHH
Q 033753           66 VCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSI  107 (112)
Q Consensus        66 V~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEe  107 (112)
                      +++.+.+.++..+ ++++++.+|.+.|+||+-+|-++....+
T Consensus         3 Lr~~~~~Ll~e~~-~~l~dqeNLi~~GLDSiR~M~L~~~wR~   43 (74)
T COG3433           3 LREQIAELLGESV-EELDDQENLIDYGLDSIRMMALLERWRK   43 (74)
T ss_pred             HHHHHHHHHcCCh-hhcCchhhHHHhchhHHHHHHHHHHHHH
Confidence            3455566666554 6999999999999999999888776554

>PRK05691 peptide synthase; Validated

Probab=94.99  E-value=0.046  Score=56.51  Aligned_cols=52  Identities=19%  Similarity=0.181  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.++..+|++|..+.|+++   .|..+.+|.+||-|||..+.++..+++.||+.
T Consensus      4238 p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~ 4289 (4334)
T PRK05691       4238 PRNELEQTLATIWADVLKVE---RVGVHDNFFELGGHSLLATQIASRVQKALQRN 4289 (4334)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCC
Confidence            45689999999999999974   68899999999999999999999999999863

>PRK12316 peptide synthase; Provisional

Probab=94.47  E-value=0.067  Score=56.25  Aligned_cols=52  Identities=19%  Similarity=0.208  Sum_probs=46.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.++++++.++.++++   .|..+.+|.+||.|||..++++..++++||+.
T Consensus      2513 p~~~~e~~l~~iw~~vL~~~---~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~ 2564 (5163)
T PRK12316       2513 PQEGLEQRLAAIWQAVLKVE---QVGLDDHFFELGGHSLLATQVVSRVRQDLGLE 2564 (5163)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---ccCCCCchhhhcchHHHHHHHHHHHHHHhCCC
Confidence            45678889999999999974   68889999999999999999999999999873

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=91.42  E-value=0.46  Score=39.12  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHHHhcC--------CCCCCCCCCCCCcc--ccCCchhhHHHHHHHHHHHcCC
Q 033753           59 KPETVQKVCEIVRRQLA--------LPAETELTSESKFS--ALGADSLDTVHLTLLLSIWLNL  111 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~--------l~~~~~It~es~f~--DLG~DSLD~vEIv~~LEeeFgI  111 (112)
                      .+.+...+..+|...++        +++....+.|+++.  ++|+|||+.++|+.++-+-|++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (386)
T TIGR02372         5 AEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHL   67 (386)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcc
Confidence            45677777777776542        22223488899984  8999999999999999999986

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
2ava_A	82	Solution Structure Of Stearoyl-Acyl Carrier Protein		2e-08
2xz0_D	82	The Structure Of The 2:1 (Partially Occupied) Compl		7e-08

>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein Length = 82

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 58  AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVH 100
           AK ET+ KV +IV+ +LAL A+  +T++S+FS LGADSLDTV 
Sbjct: 1   AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVE 43

>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) And Acyl Carrier Protein. Length = 82

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 58  AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVH 100
           AK ET+ KV +IV+ +LAL A+  +T++S+FS LGAD LDTV 
Sbjct: 1   AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADXLDTVE 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
2ava_A	82	ACP I, acyl carrier protein I, chloroplast; four-h	2e-12
1vku_A	100	Acyl carrier protein; TM0175, structural genomics,	2e-10
2kw2_A	101	Specialized acyl carrier protein; structural genom	5e-07
1x3o_A	80	Acyl carrier protein; structural genomics, riken s	6e-07
3ejb_A	97	Acyl carrier protein; protein-protein complex, cyt	6e-07
3gzm_A	81	Acyl carrier protein; helix bundle, phosphopanteth	8e-07
2dnw_A	99	Acyl carrier protein; ACP, fatty acid biosynthesis	9e-07
2kwl_A	84	ACP, acyl carrier protein; structural genomics, se	1e-06
1l0i_A	78	Acyl carrier protein; acyl chain binding, fatty ac	1e-06
2l4b_A	88	Acyl carrier protein; infectious disease, human gr	1e-06
2cnr_A	82	FAS, ACP, acyl carrier protein; polykdetide, phosp	1e-06
2qnw_A	82	Acyl carrier protein; malaria, SGC, structural gen	1e-06
2l3v_A	79	ACP, acyl carrier protein; structural genomi seatt	2e-06
4dxe_H	101	ACP, acyl carrier protein; acyl-carrier-protein sy	2e-06
2lol_A	81	ACP, acyl carrier protein; lipid transport; NMR {R	2e-06
2ehs_A	77	ACP, acyl carrier protein; lipid transport, struct	2e-06
1klp_A	115	ACP, ACPM, meromycolate extension acyl carrier pro	3e-06
1f80_D	81	Acyl carrier protein; transferase; HET: PN2; 2.30A	2e-05
2cgq_A	113	Acyl carrier protein ACPA; RV0033, protein transpo	4e-05
2kr5_A	89	PKS, aflatoxin biosynthesis polyketide synthase; a	4e-04
2jq4_A	105	AGR_C_4658P, hypothetical protein ATU2571; ATC2521	6e-04

>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* Length = 82

 Score = 56.5 bits (137), Expect = 2e-12
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 58  AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHL 101
           AK ET+ KV +IV+ +LAL A+  +T++S+FS LGADSLDTV +
Sbjct: 1   AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEI 44

>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1 Length = 100

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 59  KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHL 101
           + + + K  EI   ++    E  +  E+ F  LG DS+D + L
Sbjct: 15  RKKLIAKFVEIASEKMGKDLE-TVDEENTFKELGFDSIDVIDL 56

>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A Length = 101

 Score = 43.6 bits (103), Expect = 5e-07
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
            T  +V  I+     +P E  +T ES     LG DSLD + +
Sbjct: 3   STFDRVATIIAETCDIPRE-TITPESHAIDDLGIDSLDFLDI 43

>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} Length = 80

 Score = 42.7 bits (101), Expect = 6e-07
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLL 105
           E  +KV  ++  +L +  E ++T E++F   LGADSLDTV L + L
Sbjct: 5   EIFEKVKAVIADKLQVEPE-KVTLEARFIEDLGADSLDTVELIMGL 49

>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* Length = 97

 Score = 43.2 bits (102), Expect = 6e-07
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 43  RFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
                 ++      S      ++V +I+  QL +  E E+T+ + F   LGADSLDTV L
Sbjct: 4   HHHHHHSSGLVPRGSHMSTIEERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVEL 62

>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A* Length = 81

 Score = 42.7 bits (101), Expect = 8e-07
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 57  SAKPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           S+   T   + +I+ +QL++  + ++   S F+  LGADSLD V L
Sbjct: 1   SSLKSTFDDIKKIISKQLSVEED-KIQMNSNFTKDLGADSLDLVEL 45

>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.8 bits (101), Expect = 9e-07
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 59  KPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
                 +V  +++    +  E +L+  S F   LG DSLD V +
Sbjct: 13  LEGIQDRVLYVLKLYDKIDPE-KLSVNSHFMKDLGLDSLDQVEI 55

>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} Length = 84

 Score = 42.3 bits (100), Expect = 1e-06
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLL 105
           E   KV  I+  QL    + E+T++S+F   L ADSLD   L  LL
Sbjct: 9   EIFSKVRSIISEQLDKKED-EITTDSRFVEDLNADSLDIYELLYLL 53

>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A Length = 78

 Score = 42.2 bits (100), Expect = 1e-06
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
              ++V +I+  QL +  E E+T+ + F   LGADSLDTV L
Sbjct: 3   TIEERVKKIIGEQLGVKQE-EVTNNASFVEDLGADSLDTVEL 43

>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} Length = 88

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 59  KPETVQKVCEIVRRQLALPA--ETELTSESKFSA-LGADSLDTVHL 101
             E   +V E V   L L    +  L+  +  +     DSLD V L
Sbjct: 6   SEEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDL 51

>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* Length = 82

 Score = 41.9 bits (99), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           E V  + EIV     +P E ++  +  F+  L  DSL  V +
Sbjct: 7   EIVAGLAEIVNEIAGIPVE-DVKLDKSFTDDLDVDSLSMVEV 47

>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} Length = 82

 Score = 41.9 bits (99), Expect = 1e-06
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 57  SAKPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           S     +++V ++V  QL +     +  ES F   L ADSLD+V L
Sbjct: 3   SDDRPLLERVKDVVADQLGVDRA-RINPESNFIKDLDADSLDSVEL 47

>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} Length = 79

 Score = 41.5 bits (98), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           +T ++V +IV   L + A+ ++T  + F   LGADSLDTV L
Sbjct: 4   DTAERVKKIVVEHLGVDAD-KVTEGASFIDDLGADSLDTVEL 44

>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus} Length = 101

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           E   KV +I+  +L + A+ ++T ++ F   LGADSLD   L
Sbjct: 26  ENFDKVKDIIVDRLGVDAD-KVTEDASFKDDLGADSLDIAEL 66

>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} Length = 81

 Score = 41.5 bits (98), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           +  QKV E+V  +L       +T++S+F   L ADSLDTV L
Sbjct: 6   KIEQKVIEMVAEKLNKDKA-IITTDSRFIEDLKADSLDTVEL 46

>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A Length = 77

 Score = 41.1 bits (97), Expect = 2e-06
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 64  QKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           ++V EI+  QL +  E ++T E+KF   LGADSLD V L
Sbjct: 4   ERVKEIIAEQLGVEKE-KITPEAKFVEDLGADSLDVVEL 41

>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 Length = 115

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 59  KPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHL 101
           + E +  + EI+     +    E+T E  F   L  DSL  V +
Sbjct: 5   QEEIIAGIAEIIEEVTGIEPS-EITPEKSFVDDLDIDSLSMVEI 47

>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A Length = 81

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLLS 106
           +T+++V +I+  +L +    ++  E+ F   LGAD LD V L + L 
Sbjct: 7   DTLERVTKIIVDRLGVDEA-DVKLEASFKEDLGADXLDVVELVMELE 52

>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis} Length = 113

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 64  QKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLL 105
           + +   ++R L    +  +T+       LG DSL    L   L
Sbjct: 29  EAINATIQRILRT--DRGITANQVLVDDLGFDSLKLFQLITEL 69

>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} Length = 89

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 55  SCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111
                 E +  V  +V  +  +  E ELT +S F+ +G DSL ++ +       L L
Sbjct: 5   GVGVSNEKLDAVMRVVSEESGIALE-ELTDDSNFADMGIDSLSSMVIGSRFREDLGL 60

>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 Length = 105

 Score = 35.7 bits (82), Expect = 6e-04
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 64  QKVCEIVRRQLALPAETE-LTSESKFSALGADSLDTVHLTLLL 105
             + EI+ +   LP   + +  E+   A G  S  +V L L +
Sbjct: 25  ATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGI 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
2l9f_A	102	CALE8, meacp; transferase, acyl carrier protein; N	99.54
2kci_A	87	Putative acyl carrier protein; alpha, ACP, PCP, st	99.47
3gzm_A	81	Acyl carrier protein; helix bundle, phosphopanteth	99.39
2ava_A	82	ACP I, acyl carrier protein I, chloroplast; four-h	99.39
3ejb_A	97	Acyl carrier protein; protein-protein complex, cyt	99.38
1f80_D	81	Acyl carrier protein; transferase; HET: PN2; 2.30A	99.38
1dv5_A	80	APO-DCP, APO-D-alanyl carrier protein; 3-helix bun	99.38
2lol_A	81	ACP, acyl carrier protein; lipid transport; NMR {R	99.37
2lki_A	105	Putative uncharacterized protein; helical bundle,	99.36
2kwl_A	84	ACP, acyl carrier protein; structural genomics, se	99.36
4dxe_H	101	ACP, acyl carrier protein; acyl-carrier-protein sy	99.36
1vku_A	100	Acyl carrier protein; TM0175, structural genomics,	99.36
1x3o_A	80	Acyl carrier protein; structural genomics, riken s	99.34
2qnw_A	82	Acyl carrier protein; malaria, SGC, structural gen	99.34
2cnr_A	82	FAS, ACP, acyl carrier protein; polykdetide, phosp	99.34
2l4b_A	88	Acyl carrier protein; infectious disease, human gr	99.33
2kw2_A	101	Specialized acyl carrier protein; structural genom	99.32
2dnw_A	99	Acyl carrier protein; ACP, fatty acid biosynthesis	99.32
2kjs_A	87	Putative acyl carrier protein; alpha, ACP, PNS, st	99.31
1af8_A	86	Actinorhodin polyketide synthase acyl carrier Pro;	99.3
2jq4_A	105	AGR_C_4658P, hypothetical protein ATU2571; ATC2521	99.3
2lte_A	103	Specialized acyl carrier protein; APO protein, tra	98.94
3ce7_A	107	Specific mitochodrial acyl carrier protein; malari	99.28
1klp_A	115	ACP, ACPM, meromycolate extension acyl carrier pro	99.27
2amw_A	83	Hypothetical protein NE2163; all helical protein,	99.26
1l0i_A	78	Acyl carrier protein; acyl chain binding, fatty ac	99.25
2ehs_A	77	ACP, acyl carrier protein; lipid transport, struct	99.18
1or5_A	83	Acyl carrier protein; ACP, biosynthesis, frenolici	99.18
2cgq_A	113	Acyl carrier protein ACPA; RV0033, protein transpo	99.18
2l3v_A	79	ACP, acyl carrier protein; structural genomi seatt	99.14
2cg5_B	91	Fatty acid synthase; transferase-hydrolase complex	99.14
1nq4_A	95	Oxytetracycline polyketide synthase acyl carrier p	99.13
1fh1_A	92	NODF, nodulation protein F; ROOT nodulation factor	99.13
2kr5_A	89	PKS, aflatoxin biosynthesis polyketide synthase; a	99.02
2afd_A	88	Protein ASL1650; twisted antiparallel helical bund	99.0
2liu_A	99	CURA; holo state, transferase; NMR {Lyngbya majusc	98.99
2l22_A	212	Mupirocin didomain acyl carrier protein; biosynthe	98.87
2ju1_A	95	Erythronolide synthase; carrier protein domain, mo	98.84
1dny_A	91	Non-ribosomal peptide synthetase peptidyl carrier	98.71
4i4d_A	93	Peptide synthetase NRPS type II-PCP; structural ge	98.7
2l22_A	212	Mupirocin didomain acyl carrier protein; biosynthe	98.63
3tej_A	329	Enterobactin synthase component F; nonribosomal pe	98.08
2cq8_A	110	10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH	97.85
2jgp_A	520	Tyrocidine synthetase 3; multifunctional enzyme, a	97.59
2fq1_A	287	Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy	97.29
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	96.78
4f6l_B	508	AUSA reductase domain protein; thioester reductase	96.43
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.19
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	95.78
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	95.74
1dd4_C	40	50S ribosomal protein L7/L12; dimer formation, fle	90.03
1zav_U	30	50S ribosomal protein L7/L12; ribosome structure a	83.54

>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}

Probab=99.54  E-value=8.1e-15  Score=101.68  Aligned_cols=54  Identities=22%  Similarity=0.250  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +-.+|+++|++||.+++++++ +.|+|+++|. |||+||||+|||+|.+|++||+.
T Consensus        11 ~~~~I~~~V~~ilaE~lev~~-e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~   65 (102)
T 2l9f_A           11 AATGALELVRHLVAERAELPV-EVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLS   65 (102)
T ss_dssp             SSCCHHHHHHHHHHHHTTSCS-SSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCS
T ss_pred             hHHHHHHHHHHHHHHHHCCCH-HHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCC
Confidence            346899999999999999997 7999999997 99999999999999999999984

>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*

Probab=99.39  E-value=4.2e-13  Score=86.08  Aligned_cols=54  Identities=31%  Similarity=0.486  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++.++|++++++.+++++ ++++++++|. |||+|||+.+||++.||++||+.
T Consensus         2 ~~~~i~~~l~~ii~~~l~~~~-~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~   56 (81)
T 3gzm_A            2 SLKSTFDDIKKIISKQLSVEE-DKIQMNSNFTKDLGADSLDLVELIMALEEKFNVT   56 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCG-GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHHhCcCH-HHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            468999999999999999986 6999999995 99999999999999999999984

>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*

Probab=99.39  E-value=7.3e-13  Score=84.62  Aligned_cols=55  Identities=47%  Similarity=0.642  Sum_probs=50.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++.++|++++++.+++++..+++++++|.|||+|||+.+||++.||++||+.
T Consensus         1 ~~~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~   55 (82)
T 2ava_A            1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGIN   55 (82)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCC
T ss_pred             ChHHHHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCc
Confidence            4678999999999999999862389999999999999999999999999999984

>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*

Probab=99.38  E-value=6.3e-13  Score=89.26  Aligned_cols=55  Identities=35%  Similarity=0.444  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+++++.++|++++++.+++++ ++|+++++|. |||+|||+.+||++.||++|||.
T Consensus        18 ~t~~~i~~~l~~iia~~l~~~~-~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~   73 (97)
T 3ejb_A           18 SHMSTIEERVKKIIGEQLGVKQ-EEVTNNASFVEDLGADSLDTVELVMALEEEFDTE   73 (97)
T ss_dssp             CCCCCHHHHHHHHHHHHSCCCT-TTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            4778999999999999999986 6999999995 99999999999999999999984

>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A

Probab=99.38  E-value=6.6e-13  Score=84.48  Aligned_cols=55  Identities=27%  Similarity=0.463  Sum_probs=50.0

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++.+++++ ++++++++| .|||+|||+.+|+++.||++||+.
T Consensus         3 m~~~~i~~~l~~~l~~~l~~~~-~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~   58 (81)
T 1f80_D            3 LGSADTLERVTKIIVDRLGVDE-ADVKLEASFKEDLGADXLDVVELVMELEDEFDME   58 (81)
T ss_dssp             --CCHHHHHHHHHHHHHSSCCS-SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCH-HhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence            4678999999999999999986 699999999 699999999999999999999984

>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A

Probab=99.38  E-value=6.1e-13  Score=85.88  Aligned_cols=54  Identities=20%  Similarity=0.167  Sum_probs=49.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccC-CchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALG-ADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG-~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++.++|+++|++.++.++ .+++++++|.++| +|||+++||+++||++|||.
T Consensus         1 ~~~~i~~~i~~il~~~~~~~~-~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~   55 (80)
T 1dv5_A            1 ADEAIKNGVLDILADLTGSDD-VKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVD   55 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSS-TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCC
T ss_pred             CHHHHHHHHHHHHHHHhCCCc-ccCCCCcchhhccCcChHHHHHHHHHHHHHhCCc
Confidence            367899999999999999875 6899999999888 99999999999999999984

>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}

Probab=99.37  E-value=1.3e-12  Score=83.10  Aligned_cols=55  Identities=35%  Similarity=0.431  Sum_probs=50.8

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++.+++++ ++++++++|. |||+|||+.+|++..||++||+.
T Consensus         2 m~~~~i~~~l~~ii~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~   57 (81)
T 2lol_A            2 STTDKIEQKVIEMVAEKLNKDK-AIITTDSRFIEDLKADSLDTVELMMAIEVEYGID   57 (81)
T ss_dssp             CSHHHHHHHHHHHHHHHSCCCT-TTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCh-hhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCC
Confidence            3678999999999999999986 6999999994 99999999999999999999984

>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}

Probab=99.36  E-value=5.4e-13  Score=91.47  Aligned_cols=61  Identities=20%  Similarity=0.240  Sum_probs=48.6

Q ss_pred             cccccCCChHHHHHHHHHHHHHhcCCC--CCCCCCCCCCcc-ccCC-chhhHHHHHHHHHHHcCCC
Q 033753           51 RFCVSCSAKPETVQKVCEIVRRQLALP--AETELTSESKFS-ALGA-DSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        51 r~~v~~~~~~ei~ekV~eIl~~~l~l~--~~~~It~es~f~-DLG~-DSLD~vEIv~~LEeeFgI~  112 (112)
                      |-++.|..+.++.++|+++|++.++++  + .+|+++++|. |||+ |||+++||+++||++|||.
T Consensus        14 ~~~~~~~~~m~i~~~i~~il~e~l~~~~~~-~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~   78 (105)
T 2lki_A           14 RENLYFQGHMQHLEAVRNILGDVLNLGERK-HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFS   78 (105)
T ss_dssp             ---------CCTHHHHHHHHHHHTTCTTGG-GTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhCCCccc-ccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCC
Confidence            556667777789999999999999987  4 6899999998 8999 9999999999999999984

>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}

Probab=99.36  E-value=7.7e-13  Score=85.02  Aligned_cols=55  Identities=35%  Similarity=0.401  Sum_probs=51.3

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++.+++++ ++++++++| .|||+|||+.+|+++.||++||+.
T Consensus         5 m~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~   60 (84)
T 2kwl_A            5 MDNDEIFSKVRSIISEQLDKKE-DEITTDSRFVEDLNADSLDIYELLYLLEEAFDDK   60 (84)
T ss_dssp             STHHHHHHHHHHHHHHHHCCCG-GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCc-ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            4688999999999999999986 699999999 699999999999999999999984

>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}

Probab=99.36  E-value=8.2e-13  Score=89.89  Aligned_cols=54  Identities=31%  Similarity=0.412  Sum_probs=49.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.++.++|+++|++.+++++ ++|+++++| .|||+|||+.+||++.||++|||.
T Consensus        23 ~~mei~~~l~~iiae~l~~~~-~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~   77 (101)
T 4dxe_H           23 NAMENFDKVKDIIVDRLGVDA-DKVTEDASFKDDLGADSLDIAELVMELEDEFGTE   77 (101)
T ss_dssp             -CTTHHHHHHHHHHHTTCCCG-GGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHCcCh-hhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCC
Confidence            456899999999999999986 799999999 599999999999999999999984

>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1

Probab=99.36  E-value=1.2e-12  Score=88.86  Aligned_cols=56  Identities=21%  Similarity=0.359  Sum_probs=52.3

Q ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        56 ~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      -+.++++.++|+++|++.+++++ .+|+++++|.|||+|||+.+||++.||++|||.
T Consensus        12 ~~~~~~i~~~l~~ila~~l~v~~-~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~   67 (100)
T 1vku_A           12 HMERKKLIAKFVEIASEKMGKDL-ETVDEENTFKELGFDSIDVIDLVMFFEDEFALR   67 (100)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCC-CSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             hccHHHHHHHHHHHHHHHHCCCH-HHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCC
Confidence            35789999999999999999986 699999999999999999999999999999984

>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}

Probab=99.34  E-value=2.1e-12  Score=81.47  Aligned_cols=55  Identities=35%  Similarity=0.456  Sum_probs=50.9

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++.+++++ ++++++++| .|||+|||+.+|++..||++||+.
T Consensus         1 M~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~   56 (80)
T 1x3o_A            1 MTEQEIFEKVKAVIADKLQVEP-EKVTLEARFIEDLGADSLDTVELIMGLEDEFGLE   56 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCG-GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCH-HHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCC
Confidence            4678999999999999999986 689999999 699999999999999999999974

>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}

Probab=99.34  E-value=1.3e-12  Score=83.72  Aligned_cols=55  Identities=29%  Similarity=0.437  Sum_probs=50.7

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ..++++.++|++++++.+++++ ++++++++| .|||+|||+.+|+++.||++||+.
T Consensus         3 ~~~~~i~~~l~~ii~~~l~~~~-~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~   58 (82)
T 2qnw_A            3 SDDRPLLERVKDVVADQLGVDR-ARINPESNFIKDLDADSLDSVELVMAFEEKFGVS   58 (82)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCCG-GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHHHHHHCCCH-hhCCCccchhhccCCcHHHHHHHHHHHHHHHCCc
Confidence            3578899999999999999986 699999999 599999999999999999999984

>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*

Probab=99.34  E-value=3e-12  Score=81.24  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++.+++++ ++++++++|. |||+|||+.+|++..||++||+.
T Consensus         3 m~~~~i~~~l~~~i~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~   58 (82)
T 2cnr_A            3 ATQEEIVAGLAEIVNEIAGIPV-EDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVK   58 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCCT-TTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCH-HHCCCCcchhhccCCChHHHHHHHHHHHHHhCCC
Confidence            4688999999999999999986 6999999995 99999999999999999999974

>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}

Probab=99.33  E-value=7.1e-13  Score=86.17  Aligned_cols=55  Identities=25%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             CChHHHHHHHHHHHHHhc---CCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQL---ALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l---~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|+++|++.+   ++++ ++|+++++| .|||+|||+.+||++.||++|||.
T Consensus         4 m~~~~i~~~v~~~i~~~l~~~~~~~-~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~   62 (88)
T 2l4b_A            4 MVSEEIKAQVMESVIGCLKLNDEQK-QILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLE   62 (88)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCCHHHH-HSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCH-hhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCC
Confidence            467899999999999999   6665 689999999 599999999999999999999984

>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A

Probab=99.32  E-value=1.9e-12  Score=87.27  Aligned_cols=51  Identities=25%  Similarity=0.412  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++.++|+++|++.+++++ .+|+++++|. |||+|||+.+||++.||++|||.
T Consensus         3 ~i~~~v~~ii~~~l~~~~-~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~   54 (101)
T 2kw2_A            3 STFDRVATIIAETCDIPR-ETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIK   54 (101)
T ss_dssp             CHHHHHHHHHHHHHCCCG-GGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCCCH-hhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCc
Confidence            689999999999999986 7999999994 99999999999999999999984

>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=4.7e-12  Score=84.48  Aligned_cols=57  Identities=19%  Similarity=0.228  Sum_probs=52.3

Q ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           55 SCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        55 ~~~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +.++++++.++|++++++.+++++ ++|+++++|. |||+|||+.+||++.||++|||.
T Consensus         9 ~~m~~~~i~~~l~~~l~~~l~~~~-~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~   66 (99)
T 2dnw_A            9 PPLTLEGIQDRVLYVLKLYDKIDP-EKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFE   66 (99)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTSCT-TTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCH-hhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            345789999999999999999986 6999999995 99999999999999999999984

>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*

Probab=99.30  E-value=1.3e-12  Score=84.32  Aligned_cols=54  Identities=15%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCC----CCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAET----ELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~----~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++.+.++|++++++.+++++ .    +++++++|.|||+|||+.+||++.||++||+.
T Consensus         2 ~~~~~~~~l~~il~~~l~~~~-~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~   59 (86)
T 1af8_A            2 ATLLTTDDLRRALVECAGETD-GTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVS   59 (86)
T ss_dssp             CCSSCHHHHHHHHHTTCCCCS-CCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSC
T ss_pred             chHHHHHHHHHHHHHHhCCCc-ccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            346688999999999999985 4    68999999999999999999999999999984

>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1

Probab=99.30  E-value=2.2e-12  Score=87.98  Aligned_cols=56  Identities=20%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             CChHHHHHHHHHHHHHhcCCC-CCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALP-AETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~-~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ..++++.++|+++|++.++++ +..+|+++++|.|||+|||+++||++.||++|||.
T Consensus        18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~   74 (105)
T 2jq4_A           18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIE   74 (105)
T ss_dssp             -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCC
Confidence            467899999999999987643 12689999999999999999999999999999984

>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}

Probab=98.94  E-value=3.1e-13  Score=92.16  Aligned_cols=62  Identities=18%  Similarity=0.246  Sum_probs=54.6

Q ss_pred             ccccccCCCh--HHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           50 NRFCVSCSAK--PETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        50 ~r~~v~~~~~--~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .|+.+.++++  .++.++|+++|++.+++++ ++|+++++|.|||+|||+.+||++.||++|||.
T Consensus        13 ~~~~~~~~~~M~~ei~~~l~~ila~~l~i~~-~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~   76 (103)
T 2lte_A           13 GRENLYFQGHMPNDMEDHLLTVLSVASGVPK-EEISRDSRMEDLAFDSLVVSELSLKLRKEFGVT   76 (103)
Confidence            3666667663  3599999999999999986 699999999999999999999999999999973

>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}

Probab=99.28  E-value=7.1e-12  Score=85.90  Aligned_cols=54  Identities=19%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCc------cccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKF------SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f------~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++.+++.++|+++|++.++ +. .+|+++++|      .|||+|||+++||++.||++|||.
T Consensus        15 ~~~~~i~~~i~~il~e~l~-~~-~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~   74 (107)
T 3ce7_A           15 TDINAVTNYIVGMCQKFLQ-KG-EKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVT   74 (107)
T ss_dssp             TCHHHHHHHHHHHHHTTBC-TT-CCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHHhC-Cc-cccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCC
Confidence            4678999999999999999 64 799999999      599999999999999999999984

>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1

Probab=99.27  E-value=9.3e-12  Score=85.29  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=51.2

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|++++++.+++++ ++|+++++|. |||+|||+.+||++.||++||+.
T Consensus         3 m~~~~i~~~l~~il~~~l~~~~-~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~   58 (115)
T 1klp_A            3 VTQEEIIAGIAEIIEEVTGIEP-SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVK   58 (115)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCT-TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHHHhCcCH-HhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCC
Confidence            5678999999999999999986 6999999995 99999999999999999999984

>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A

Probab=99.25  E-value=8.3e-12  Score=78.81  Aligned_cols=52  Identities=35%  Similarity=0.470  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++.++|++++++.+++++ ++++++++|. |||+|||+.+|++..||++||+.
T Consensus         2 ~~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~   54 (78)
T 1l0i_A            2 STIEERVKKIIGEQLGVKQ-EEVTNNASFVEDLGADSLDTVELVMALEEEFDTE   54 (78)
T ss_dssp             CCHHHHHHHHHHHHHTCCG-GGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHHhCCCH-HHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCC
Confidence            3688999999999999986 6999999995 99999999999999999999974

>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A

Probab=99.18  E-value=3.4e-11  Score=75.15  Aligned_cols=51  Identities=35%  Similarity=0.506  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++.++|++++++.+++++ ++++++++| .|||+|||+.++++..||++||+.
T Consensus         1 ~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~   52 (77)
T 2ehs_A            1 SLEERVKEIIAEQLGVEK-EKITPEAKFVEDLGADSLDVVELIMAFEEEFGIE   52 (77)
T ss_dssp             CHHHHHHHHHHHHHCCCG-GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhCCCh-hhCCCccchhhccCCCHHHHHHHHHHHHHHhCCc
Confidence            377899999999999986 689999999 799999999999999999999974

>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1

Probab=99.18  E-value=1.2e-11  Score=79.29  Aligned_cols=53  Identities=19%  Similarity=0.269  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCC--CCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELT--SESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It--~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +.+.++|++++++.+++++..+++  ++++|.|||+|||+.+||+..||++||+.
T Consensus         3 ~~~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~   57 (83)
T 1or5_A            3 ALTVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIA   57 (83)
T ss_dssp             CSCHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCC
T ss_pred             hHHHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCc
Confidence            457889999999999998622798  99999999999999999999999999984

>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}

Probab=99.18  E-value=2.1e-11  Score=84.85  Aligned_cols=48  Identities=21%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++.++|+++|++.++      |+++++|. |||+|||+.+||++.||++|||.
T Consensus        28 ~~ei~~~v~~il~e~l~------I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~   76 (113)
T 2cgq_A           28 EEAINATIQRILRTDRG------ITANQVLVDDLGFDSLKLFQLITELEDEFDIA   76 (113)
T ss_dssp             HHHHHHHHHHHHTCCSC------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHhC------CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCC
Confidence            67899999999998886      78899995 99999999999999999999984

>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}

Probab=99.14  E-value=8.2e-12  Score=78.84  Aligned_cols=52  Identities=35%  Similarity=0.497  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCc-cccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f-~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++.++|++++++.+++++ ++++++++| .|||+|||+.+|++..||++||+.
T Consensus         3 ~~i~~~l~~~~~~~l~~~~-~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~   55 (79)
T 2l3v_A            3 SDTAERVKKIVVEHLGVDA-DKVTEGASFIDDLGADSLDTVELVMAFEEEFGVE   55 (79)
T ss_dssp             THHHHHHHHHHHHHTCCCS-TTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCH-hhCCCCCccccccCCCHHHHHHHHHHHHHHHCCC
Confidence            4799999999999999986 699999999 699999999999999999999974

>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A

Probab=99.14  E-value=5.4e-11  Score=80.33  Aligned_cols=49  Identities=27%  Similarity=0.359  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           64 QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        64 ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +.|+++|++++++++.++|+++..|.|||+|||+.|||.++||++||+.
T Consensus         9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~   57 (91)
T 2cg5_B            9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLV   57 (91)
T ss_dssp             TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCC
Confidence            5788999999999744699999999999999999999999999999984

>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1

Probab=99.13  E-value=4.5e-11  Score=79.65  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhcCCCCC---CCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           62 TVQKVCEIVRRQLALPAE---TELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        62 i~ekV~eIl~~~l~l~~~---~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +.++|++++++.++++..   ++|+++++|.|||+|||+.+||++.||++|||.
T Consensus         5 t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~   58 (95)
T 1nq4_A            5 TLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQ   58 (95)
T ss_dssp             CHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCc
Confidence            567888999998887631   279999999999999999999999999999984

>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1

Probab=99.13  E-value=7.9e-12  Score=82.50  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHhcCCCC-------CCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPA-------ETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~-------~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++.++|+++|++.++.+.       .++++++++|.|||+|||+++||++.||++|||.
T Consensus         3 ~~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~   62 (92)
T 1fh1_A            3 DQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIK   62 (92)
T ss_dssp             --CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC----
T ss_pred             hHHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCc
Confidence            4678899999999987543       1489999999999999999999999999999983

>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}

Probab=99.02  E-value=3.1e-10  Score=72.96  Aligned_cols=54  Identities=26%  Similarity=0.359  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.+.|++++++.++++. ++++++++|.+||+|||..++++..||++||+.
T Consensus         8 ~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~   61 (89)
T 2kr5_A            8 VSNEKLDAVMRVVSEESGIAL-EELTDDSNFADMGIDSLSSMVIGSRFREDLGLD   61 (89)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCG-GGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCC
T ss_pred             ccHHHHHHHHHHHHHHHCcCH-HHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCC
Confidence            457899999999999999985 689999999999999999999999999999973

>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A

Probab=99.00  E-value=8.1e-10  Score=70.20  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ....++.+.|++++++.++++. ++++++.+|.+||+|||..++++..||++||+.
T Consensus        10 ~~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~   64 (88)
T 2afd_A           10 ASVEDIQSWLIDQFAQQLDVDP-DDIDMEESFDNYDLNSSKALILLGRLEKWLGKE   64 (88)
T ss_dssp             SSHHHHHHHHHHHHHHHHTSCG-GGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCC
Confidence            3577899999999999999985 689999999999999999999999999999973

>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*

Probab=98.99  E-value=9.6e-10  Score=71.40  Aligned_cols=55  Identities=25%  Similarity=0.253  Sum_probs=50.8

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ....++.+.|++++++.++++. ++++++.+|.|||+|||..++++..|+++||+.
T Consensus        17 ~~~~~~~~~l~~~~~~~l~~~~-~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~   71 (99)
T 2liu_A           17 VNLSEIKQVLKQQLAEALYTEE-SEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLN   71 (99)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSCG-GGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCC
Confidence            4678999999999999999985 689999999999999999999999999999973

>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}

Probab=98.87  E-value=2.7e-09  Score=78.82  Aligned_cols=55  Identities=20%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ..++++.+.|++++++.++++. ++|+++.+|.|||+|||+.+||+..|+++||+.
T Consensus        22 ~~~~~i~~~l~~~~a~~l~~~~-~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~   76 (212)
T 2l22_A           22 VADDECAQFLRQSLAAMLYCEP-GQIRDGSRFLELGLDSVIAAQWIREINKHYQLK   76 (212)
T ss_dssp             CCTTHHHHHHHHHHHHHTTCCT-TSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHCcCH-HHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCC
Confidence            3567899999999999999986 699999999999999999999999999999973

>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A

Probab=98.84  E-value=2.8e-09  Score=69.12  Aligned_cols=53  Identities=28%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHHhcC-CCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           59 KPETVQKVCEIVRRQLA-LPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~-l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...+.+.|++++++.++ .+. ++|+++.+|.+||+|||..+|++..|+++||+.
T Consensus        18 ~~~~~~~l~~~~~~~l~~~~~-~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~   71 (95)
T 2ju1_A           18 TAELVRLVRTSTATVLGHDDP-KAVRATTPFKELGFDSLAAVRLRNLLNAATGLR   71 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCG-GGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCh-hhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCC
Confidence            45788899999999999 554 689999999999999999999999999999973

>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A

Probab=98.71  E-value=3e-08  Score=65.10  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.++|++++++.++++   .|+++.+|.+||.|||..++++..|+++||+.
T Consensus        11 p~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~   62 (91)
T 1dny_A           11 PTNAVESKLAEIWERVLGVS---GIGILDNFFQIGGHSLKAMAVAAQVHREYQVE   62 (91)
T ss_dssp             CSSHHHHHHHHHHHHHHTCS---SCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCC
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence            45678999999999999984   78999999999999999999999999999973

>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}

Probab=98.70  E-value=3.7e-08  Score=64.57  Aligned_cols=51  Identities=16%  Similarity=0.265  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ..++.++|++++++.++++   +|.++.+|.+||.|||..++++..|+++||+.
T Consensus        14 ~~~~e~~l~~i~~~vL~~~---~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~   64 (93)
T 4i4d_A           14 RRALERDIAAIWAETLGRD---SVGPHEDFAALGGNSIHAIXITNRVEELVDAE   64 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCC
Confidence            4688999999999999983   79999999999999999999999999999973

>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}

Probab=98.63  E-value=6.7e-08  Score=71.30  Aligned_cols=54  Identities=19%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.++.+.|++++++.++++. ++|+++.+|.+||+|||+.+||+..|+++||+.
T Consensus       127 ~~~~i~~~l~~~~~~~l~~~~-~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~  180 (212)
T 2l22_A          127 QRESIQDYLKQSLGELLFLDP-GQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQ  180 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCS-SSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCh-hhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence            356888999999999999976 699999999999999999999999999999973

>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A

Probab=98.08  E-value=5.2e-06  Score=63.67  Aligned_cols=52  Identities=19%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ...++.++|+++++++|+++   .|..+.+|.+||.|||..++++..|+++||+.
T Consensus         8 p~~~~e~~l~~~~~~~l~~~---~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~   59 (329)
T 3tej_A            8 PKAGSETIIAAAFSSLLGCD---VQDADADFFALGGHXLLAMKLAAQLSRQVARQ   59 (329)
T ss_dssp             CCTTHHHHHHHHHHHHHTC----CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSC
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCC
Confidence            45678899999999999985   48899999999999999999999999999973

>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=2e-05  Score=54.65  Aligned_cols=50  Identities=26%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHhcC-CCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcC-C
Q 033753           59 KPETVQKVCEIVRRQLA-LPAETELTSESKFSALGADSLDTVHLTLLLSIWLN-L  111 (112)
Q Consensus        59 ~~ei~ekV~eIl~~~l~-l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFg-I  111 (112)
                      +.++.++|++|-.++|+ .   ..|.++++|.+||-|||..+.++..|+++|| +
T Consensus        23 ~~~~E~~La~iW~~vL~~~---~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v   74 (110)
T 2cq8_A           23 ELVTAEAVRSVWQRILPKV---LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGL   74 (110)
T ss_dssp             HHHHHHHHHHHHHHHCSSC---SCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHHHHHhCCC---CCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCC
Confidence            46788999999999998 4   3799999999999999999999999999998 6

>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}

Probab=97.59  E-value=0.00011  Score=59.06  Aligned_cols=51  Identities=16%  Similarity=0.259  Sum_probs=46.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL  111 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI  111 (112)
                      ...++.++|+++.+++|+++   .|..+.+|.+||.|||..+.++..++++||+
T Consensus         7 p~~~~e~~l~~iw~~vL~~~---~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~   57 (520)
T 2jgp_A            7 PRSVWEARLAQVWEQVLNVP---QVGALDDFFALGGHSLRAMRVLSSMHNEYQV   57 (520)
T ss_dssp             CCSHHHHHHHHHHHHHHTCS---CCCTTCBTTTTTCCHHHHHHHHHHHHHHHCB
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCccHHHhcccHHHHHHHHHHHHHHhCC
Confidence            45678899999999999984   6889999999999999999999999999987

>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}

Probab=97.29  E-value=0.00024  Score=54.73  Aligned_cols=46  Identities=15%  Similarity=0.096  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753           63 VQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL  111 (112)
Q Consensus        63 ~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI  111 (112)
                      .+.+++.+++.+ +++ +.++++.+|.+||+||+..|.++..++++ |+
T Consensus       217 ~dwlr~~va~~L-~~~-~~i~~~~nL~~lGlDSi~~m~l~~~~~~~-g~  262 (287)
T 2fq1_A          217 KAALREVILPLL-DES-DEPFDDDNLIDYGLDSVRMMALAARWRKV-HG  262 (287)
T ss_dssp             HHHHHHHHGGGC-CCS-SCCCTTSCSGGGTCCTTHHHHHHHHHTTT-CT
T ss_pred             HHHHHHHHHHHh-CCH-hhcCCCCCHHHhCccHHHHHHHHHHHHHc-CC
Confidence            356788888888 765 68999999999999999999999999987 76

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=96.78  E-value=0.00092  Score=60.28  Aligned_cols=53  Identities=17%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +...++.++++++.++.|+++   .|..+.+|.+||.|||..++|+..|+++||+.
T Consensus       968 ~p~~~~e~~l~~~~~~vL~~~---~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~ 1020 (1304)
T 2vsq_A          968 GPRNEMEETIAQIWSEVLGRK---QIGIHDDFFALGGHALKAMTAASRIKKELGID 1020 (1304)
T ss_dssp             CCSSHHHHHHHHHHHHHHTCS---CCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCC
T ss_pred             CCCChHHHHHHHHHHHHcCCC---ccCCCCCHHHhCCChHHHHHHHHHHHHHhCCC
Confidence            345678899999999999973   68899999999999999999999999999873

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=96.43  E-value=0.00049  Score=55.80  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL  111 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI  111 (112)
                      ...++.+.|+++.++.|+++   +|..+.+|.+||.|||..+.|+..|++ ||+
T Consensus        42 p~~~~e~~l~~~w~~~l~~~---~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~   91 (508)
T 4f6l_B           42 PSNEIEQTFVDVFGEVLKQN---DVGVDDDFFELGGNSLEAMLVVSHLKR-FGH   91 (508)
T ss_dssp             ------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCChHHcCchHHHHHHHHHHHHH-cCC
Confidence            45678899999999999974   688999999999999999999999986 875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.19  E-value=0.0008  Score=65.25  Aligned_cols=49  Identities=22%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCC
Q 033753           63 VQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL  111 (112)
Q Consensus        63 ~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI  111 (112)
                      .+.+.+++++.|+++..++|.++.+|.|||.|||..+||...|+++||+
T Consensus      2125 ~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~ 2173 (2512)
T 2vz8_A         2125 QKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDL 2173 (2512)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCC
Confidence            4568889999999874468999999999999999999999999999986

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=95.78  E-value=0.0016  Score=54.53  Aligned_cols=51  Identities=16%  Similarity=0.098  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHH-HcCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSI-WLNL  111 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEe-eFgI  111 (112)
                      ...++.+.++++.++.|+++   .+..+.+|.+||-|||..+.|+..|++ .||+
T Consensus       521 ~~~~~e~~l~~iw~~vL~~~---~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~  572 (620)
T 4dg8_A          521 ALDPDQRGCAQLWSELLGCE---VGAADQDFFLCGGNSLLALQLVALCQSAGAGA  572 (620)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CCCCCCChhhccCcHHHHHHHHHHHHhhCCCC
Confidence            34567778899999999874   577889999999999999999999998 7876

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=95.74  E-value=0.0082  Score=49.63  Aligned_cols=47  Identities=15%  Similarity=0.171  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLN  110 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFg  110 (112)
                      +..+.+++++.+.++..  ..+..+.+|.+||.|||..+.|+..|++ ++
T Consensus       545 ~~~~~l~~~~~~~l~~~--~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~  591 (617)
T 3rg2_A          545 ASKAALREVILPLLDES--DEPFDDDNLIDYGLDSVRMMALAARWRK-VH  591 (617)
T ss_dssp             CSHHHHHHHHGGGSCTT--CCCCTTSCGGGGTCCHHHHHHHHHHHHT-TS
T ss_pred             ccHHHHHHHHHHHhccC--CCCCCCCChhhcCccHHHHHHHHHHHHH-hc
Confidence            35567888888888743  4788899999999999999999999987 44

>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1

Probab=90.03  E-value=0.22  Score=28.60  Aligned_cols=20  Identities=10%  Similarity=-0.032  Sum_probs=16.8

Q ss_pred             CchhhHHHHHHHHHHHcCCC
Q 033753           93 ADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        93 ~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +.=+...|++-.|||+|||+
T Consensus        13 lTvlE~~eLvk~leekfGVs   32 (40)
T 1dd4_C           13 LTVSELAELVKKLEDKFGVT   32 (40)
T ss_dssp             SCHHHHHHHHHHHHHHTCCC
T ss_pred             CcHHHHHHHHHHHHHHHCCC
Confidence            44477889999999999985

>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C

Probab=83.54  E-value=0.79  Score=24.69  Aligned_cols=18  Identities=11%  Similarity=-0.058  Sum_probs=14.8

Q ss_pred             CchhhHHHHHHHHHHHcC
Q 033753           93 ADSLDTVHLTLLLSIWLN  110 (112)
Q Consensus        93 ~DSLD~vEIv~~LEeeFg  110 (112)
                      +.=+...|++-++||+||
T Consensus        13 lTvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U           13 LTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             SBHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHHhC
Confidence            334678899999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1f80d_	74	a.28.1.1 (D:) Acyl carrier protein {Bacillus subti	6e-07
d1t8ka_	77	a.28.1.1 (A:) Acyl carrier protein {Escherichia co	5e-04
d1or5a_	82	a.28.1.1 (A:) Frenolicin polyketide synthase acyl	6e-04

>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} Length = 74

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.7 bits (98), Expect = 6e-07
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 61  ETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNL 111
           +T+++V +I+  +L +         S    LGAD LD V L + L    ++
Sbjct: 3   DTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDM 53

>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} Length = 77

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (78), Expect = 5e-04
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 64  QKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHL 101
           ++V +I+  QL +  E    + S    LGADSLDTV L
Sbjct: 5   ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVEL 42

>d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} Length = 82

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP
species: Streptomyces roseofulvus [TaxId: 33902]

 Score = 33.8 bits (77), Expect = 6e-04
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 62  TVQKVCEIVRRQLA--LPAETELTSESKFSALGADSLDTVHL 101
           TV  + +++          +     ++ F  LG DSL  +  
Sbjct: 4   TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLET 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1f80d_	74	Acyl carrier protein {Bacillus subtilis [TaxId: 14	99.47
d1t8ka_	77	Acyl carrier protein {Escherichia coli [TaxId: 562	99.45
d1vkua_	85	Acyl carrier protein {Thermotoga maritima [TaxId:	99.36
d1klpa_	115	Acyl carrier protein {Mycobacterium tuberculosis [	99.25
d1dv5a_	80	apo-D-alanyl carrier protein {Lactobacillus casei	99.18
d2jq4a1	83	Hypothetical protein Atu2571 {Agrobacterium tumefa	99.13
d1nq4a_	95	Oxytetracycline polyketide synthase acyl carrier {	99.07
d1or5a_	82	Frenolicin polyketide synthase acyl carrier protei	99.01
d2af8a_	86	Actinorhodin polyketide synthase acyl carrier prot	98.98
d2pnga1	76	Type I fatty acid synthase ACP domain {Rat (Rattus	98.87
d2gdwa1	76	Peptidyl carrier protein (PCP), thioester domain {	98.73
d2gyc31	47	Ribosomal protein L7/12, oligomerisation (N-termin	94.41
d1dd3a1	57	Ribosomal protein L7/12, oligomerisation (N-termin	87.55

>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Bacillus subtilis [TaxId: 1423]

Probab=99.47  E-value=3.9e-14  Score=89.64  Aligned_cols=52  Identities=29%  Similarity=0.498  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        60 ~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+++++|++|+++++++++ ++|+++++|. |||+|||+.+||++.||++||+.
T Consensus         2 ~dv~~~v~~iia~~l~~~~-~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~   54 (74)
T d1f80d_           2 ADTLERVTKIIVDRLGVDE-ADVKLEASFKEDLGADXLDVVELVMELEDEFDME   54 (74)
T ss_dssp             CHHHHHHHHHHHHHSSCCS-SCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHCcCH-HHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCC
Confidence            4799999999999999987 7999999997 89999999999999999999984

>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=4e-14  Score=90.30  Aligned_cols=51  Identities=35%  Similarity=0.476  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        61 ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +|.++|++||++.+++++ ++|+++++|. |||+|||+.+||++.+|++|||.
T Consensus         2 ~I~~~v~~iia~~l~i~~-~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~   53 (77)
T d1t8ka_           2 TIEERVKKIIGEQLGVKQ-EEVTNNASFVEDLGADSLDTVELVMALEEEFDTE   53 (77)
T ss_dssp             CHHHHHHHHHHHHHTCCG-GGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHHHHHHCCCH-HHcCCCCcchhccccchhHHHHHHHHHHHHhCCC
Confidence            478999999999999987 7999999997 89999999999999999999984

>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=6.4e-13  Score=84.94  Aligned_cols=55  Identities=22%  Similarity=0.373  Sum_probs=51.7

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +.++++.++|++++++.+++++ ++|+++++|.|||+|||+.++|+..||++||+.
T Consensus         4 m~~~~i~~~l~~iv~~~l~~~~-~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~   58 (85)
T d1vkua_           4 MERKKLIAKFVEIASEKMGKDL-ETVDEENTFKELGFDSIDVIDLVMFFEDEFALR   58 (85)
T ss_dssp             THHHHHHHHHHHHHHHTTCCCC-CSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCH-HHCCCCCCHHHhcCcchHHHHHHHHHHHHccCC
Confidence            4678999999999999999986 699999999999999999999999999999974

>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=6.7e-12  Score=84.48  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=51.7

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc-ccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~-DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++++.++|+++|++.+++++ ++|+++++|. |||+|||+.++|+..||++||+.
T Consensus         3 ~t~~~i~~~l~~iv~~~l~~~~-~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~   58 (115)
T d1klpa_           3 VTQEEIIAGIAEIIEEVTGIEP-SEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVK   58 (115)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCT-TTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCc-cccCcccchhhhcccchhHHHHHHHHHHHHHCCC
Confidence            5789999999999999999987 7999999997 89999999999999999999973

>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: apo-D-alanyl carrier protein
domain: apo-D-alanyl carrier protein
species: Lactobacillus casei [TaxId: 1582]

Probab=99.18  E-value=1.5e-11  Score=78.43  Aligned_cols=54  Identities=19%  Similarity=0.081  Sum_probs=49.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccc-cCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSA-LGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~D-LG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +++++.++|++++++.++.++ ..++++++|.+ +|+|||+.+|++..||++||+.
T Consensus         1 s~e~I~~~v~~il~~~l~~~~-~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~   55 (80)
T d1dv5a_           1 ADEAIKNGVLDILADLTGSDD-VKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVD   55 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSS-TTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCC
T ss_pred             ChHHHHHHHHHHHHHHhccch-hhcCCCccccccCCCCHHHHHHHHHHHHHHHCCC
Confidence            367899999999999999986 69999999986 5699999999999999999984

>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Hypothetical protein Atu2571
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.13  E-value=2.7e-11  Score=77.46  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhcCC--CCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           63 VQKVCEIVRRQLAL--PAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        63 ~ekV~eIl~~~l~l--~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .++|++++++.+++  ++ ++|+++++|.|||+|||+.+|++..||++|||.
T Consensus         2 ~e~i~~il~~~~~l~~~~-~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~   52 (83)
T d2jq4a1           2 NATIREILAKFGQLPTPV-DTIADEADLYAAGLSSFASVQLMLGIEEAFDIE   52 (83)
T ss_dssp             HHHHHHHHHHTSCCSSCG-GGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHccCCCH-HHcCCCCCHHHHhCccHHHHHHHHHHHHHHCCC
Confidence            57889999998654  54 689999999999999999999999999999984

>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Oxytetracycline polyketide synthase acyl carrier
species: Streptomyces rimosus [TaxId: 1927]

Probab=99.07  E-value=5.3e-11  Score=78.35  Aligned_cols=55  Identities=15%  Similarity=0.090  Sum_probs=50.4

Q ss_pred             CChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        57 ~~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.+++++.|++++.+.++++. +++++|++|.|||+|||+.+||+..||++||+.
T Consensus         4 ~t~d~l~~~lre~~~~~~~~~~-~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~   58 (95)
T d1nq4a_           4 LTLSDLLTLLRECAGEEESIDL-GGDVEDVAFDALGYDSLALLNTVGRIERDYGVQ   58 (95)
T ss_dssp             CCHHHHHHHHHHHHTCSSTTCS-CSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCC
T ss_pred             cCHHHHHHHHHHHHhHHhCCCh-hhcccCCCHHHcCCcHHHHHHHHHHHHHHhcCC
Confidence            3678899999999999899986 799999999999999999999999999999974

>d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP
species: Streptomyces roseofulvus [TaxId: 33902]

Probab=99.01  E-value=1.1e-10  Score=75.20  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhcCCCCC--CCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           62 TVQKVCEIVRRQLALPAE--TELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        62 i~ekV~eIl~~~l~l~~~--~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      ++++|+++|++.++.+..  .+++++++|.|||+|||+.+||+..||++||+.
T Consensus         4 T~e~l~~il~e~~g~~~~~~~~~d~d~~f~dlG~DSl~~~el~~~le~~~g~~   56 (82)
T d1or5a_           4 TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIA   56 (82)
T ss_dssp             CHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCC
T ss_pred             cHHHHHHHHHHHhCCCcccccCCCcCcCHHHcCCChHhHHHHHHHHHHHHhCc
Confidence            467888999998886542  246778899999999999999999999999974

>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP
species: Streptomyces coelicolor, A3(2) [TaxId: 1902]

Probab=98.98  E-value=1.1e-10  Score=75.34  Aligned_cols=54  Identities=13%  Similarity=0.100  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      +.+++.+.+++.+.+.+++++ ++++++++|.|||+|||+.++++..||++||+.
T Consensus         6 t~d~l~~~l~e~~~~~~g~~~-~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~   59 (86)
T d2af8a_           6 TTDDLRRALVECAGETDGTDL-SGDFLDLRFEDIGYDSLALMETAARLESRYGVS   59 (86)
T ss_dssp             CHHHHHHHHHHTTCCCSCCCC-SSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred             cHHHHHHHHHHHHccccCCCc-cccccCCCHHHcCCCHHHHHHHHHHHHHHHccC
Confidence            345555555555555567775 799999999999999999999999999999974

>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Type I fatty acid synthase ACP domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=2.5e-10  Score=72.40  Aligned_cols=50  Identities=22%  Similarity=0.295  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           63 VQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        63 ~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .++|.+++++.+++++.++|+++.+|.|||+|||..+|+...|+++||+.
T Consensus         6 e~~l~~~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~   55 (76)
T d2pnga1           6 QRDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLV   55 (76)
T ss_dssp             CCCGGGTHHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCC
Confidence            45677888999998544799999999999999999999999999999974

>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Peptidyl carrier domain
domain: Peptidyl carrier protein (PCP), thioester domain
species: Bacillus brevis [TaxId: 1393]

Probab=98.73  E-value=1.2e-08  Score=64.33  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCCchhhHHHHHHHHHHHcCCC
Q 033753           58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGADSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        58 ~~~ei~ekV~eIl~~~l~l~~~~~It~es~f~DLG~DSLD~vEIv~~LEeeFgI~  112 (112)
                      .+.++.++|+++.++.|+++   .++++.+|.|+|.|||..++++..|+++||+.
T Consensus         4 P~~~~E~~l~~i~~~vL~~~---~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~   55 (76)
T d2gdwa1           4 PTNAVESKLAEIWERVLGVS---GIGILDNFFQIGGHSLKAMAVAAQVHREYQVE   55 (76)
T ss_dssp             CCSHHHHHHHHHHHHHTTSS---CCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSC
T ss_pred             cCCHHHHHHHHHHHHHcCCC---CCCCCCCHHHcCCChHHHHHHHHHHHHHHCCC
Confidence            34589999999999999974   68899999999999999999999999999974

>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.012  Score=33.67  Aligned_cols=17  Identities=18%  Similarity=0.210  Sum_probs=15.8

Q ss_pred             hhHHHHHHHHHHHcCCC
Q 033753           96 LDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        96 LD~vEIv~~LEeeFgI~  112 (112)
                      +|.+||+-++||+||++
T Consensus        16 mdvveLi~amEEKFGVs   32 (47)
T d2gyc31          16 MDVVELISAMEEKFGVS   32 (47)
T ss_dssp             HHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            68999999999999985

>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.55  E-value=0.088  Score=31.06  Aligned_cols=19  Identities=11%  Similarity=-0.013  Sum_probs=16.0

Q ss_pred             chhhHHHHHHHHHHHcCCC
Q 033753           94 DSLDTVHLTLLLSIWLNLI  112 (112)
Q Consensus        94 DSLD~vEIv~~LEeeFgI~  112 (112)
                      .=+.+.||+-+|||+||++
T Consensus        14 tv~El~ELvKalEekfGVs   32 (57)
T d1dd3a1          14 TVSELAELVKKLEDKFGVT   32 (57)
T ss_dssp             CHHHHHHHHHHHHHHHCHH
T ss_pred             cHHHHHHHHHHHHHHhCcc
Confidence            3467889999999999974