Citrus Sinensis ID: 033769

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccEccccccccccHHHHHHccEccHHHHHHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masfeeappgnpkagekIFKTKCAQchtvvkgaghkqgpnlnglfgrqsgttpgysysaaNKGMAVIWEEKTLYDyllnpkkyipgtkmvfpglkkpqdRADLIAYLKESTA
Flexible Loop (DISEMBL)
masfeeappgnpkagEKIFKTKCAQCHTVVKgaghkqgpnlNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKmvfpglkkpqDRADLIAYLKESTA
Low Complexity Region (SEG)
MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Disordered region (IsUnstruct)
*****************IFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLK******DLIAY******
Disordered Region (DISOPRED)
**********NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST*
Disordered Region (DISEMBL)
*************AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Disordered Region (DISPRO)
******APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q9T0G2	112	Probable cytochrome c At4	yes	no	1.0	1.0	0.946	8e-58
P00051	111	Cytochrome c OS=Cucurbita	N/A	no	0.991	1.0	0.945	8e-57
Q0DI31	112	Cytochrome c OS=Oryza sat	yes	no	1.0	1.0	0.919	8e-57
A2Y4S9	112	Cytochrome c OS=Oryza sat	N/A	no	1.0	1.0	0.919	8e-57
P00052	111	Cytochrome c OS=Vigna rad	N/A	no	0.991	1.0	0.936	1e-56
P00062	111	Cytochrome c OS=Sambucus	N/A	no	0.991	1.0	0.936	8e-56
P00065	111	Cytochrome c OS=Arum macu	N/A	no	0.991	1.0	0.927	1e-55
P62773	111	Cytochrome c OS=Brassica	N/A	no	0.991	1.0	0.927	3e-55
P62772	111	Cytochrome c OS=Brassica	N/A	no	0.991	1.0	0.927	3e-55
P00059	111	Cytochrome c OS=Abutilon	N/A	no	0.991	1.0	0.909	3e-55

>sp|Q9T0G2|CYC3_ARATH Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=3 SV=1

 Score =  221 bits (564), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 108/112 (96%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNPKAGEKIF+TKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
Arabidopsis thaliana (taxid: 3702)

>sp|P00051|CYC_CUCMA Cytochrome c OS=Cucurbita maxima PE=1 SV=1

 Score =  218 bits (555), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 107/111 (96%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+EAPPGN KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K  AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  KNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Cucurbita maxima (taxid: 3661)

>sp|Q0DI31|CYC_ORYSJ Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1

 Score =  218 bits (555), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 107/112 (95%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y4S9|CYC_ORYSI Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=2 SV=1

 Score =  218 bits (555), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 107/112 (95%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P00052|CYC_VIGRR Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/111 (93%), Positives = 106/111 (95%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+EAPPGN K+GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYS AN
Sbjct: 1   ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct: 61  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Vigna radiata var. radiata (taxid: 3916)

>sp|P00062|CYC_SAMNI Cytochrome c OS=Sambucus nigra PE=1 SV=1

 Score =  215 bits (547), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 104/111 (93%), Positives = 105/111 (94%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF EAPPGNPKAGEKIFKTKC QCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAAN
Sbjct: 1   ASFAEAPPGNPKAGEKIFKTKCNQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct: 61  KNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Sambucus nigra (taxid: 4202)

>sp|P00065|CYC_ARUMA Cytochrome c OS=Arum maculatum PE=1 SV=1

 Score =  214 bits (545), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/111 (92%), Positives = 104/111 (93%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAAN
Sbjct: 1   ASFAEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K MAVIWEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLIAYLKESTA
Sbjct: 61  KNMAVIWEESTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKESTA 111

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Arum maculatum (taxid: 4458)

>sp|P62773|CYC_BRAOL Cytochrome c OS=Brassica oleracea PE=1 SV=1

 Score =  213 bits (541), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/111 (92%), Positives = 105/111 (94%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+EAPPGN KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K  AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  KNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Brassica oleracea (taxid: 3712)

>sp|P62772|CYC_BRANA Cytochrome c OS=Brassica napus PE=1 SV=1

 Score =  213 bits (541), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/111 (92%), Positives = 105/111 (94%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+EAPPGN KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT GYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K  AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  KNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Brassica napus (taxid: 3708)

>sp|P00059|CYC_ABUTH Cytochrome c OS=Abutilon theophrasti PE=1 SV=1

 Score =  213 bits (541), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 105/111 (94%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+ZAPPGB KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN
Sbjct: 1   ASFQZAPPGBAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K MAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA
Sbjct: 61  KNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111

Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.

Abutilon theophrasti (taxid: 3631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
225460129	112	PREDICTED: cytochrome c [Vitis vinifera]	1.0	1.0	0.946	1e-56
357133628	113	PREDICTED: cytochrome c-like [Brachypodi	1.0	0.991	0.937	2e-56
449457373	114	PREDICTED: cytochrome c-like [Cucumis sa	0.991	0.973	0.954	3e-56
15234910	112	cytochrome c-2 [Arabidopsis thaliana] gi	1.0	1.0	0.946	3e-56
351727611	112	uncharacterized protein LOC100500015 [Gl	1.0	1.0	0.946	7e-56
147773266	112	hypothetical protein VITISV_033958 [Viti	1.0	1.0	0.937	1e-55
359806238	112	uncharacterized protein LOC100817799 [Gl	1.0	1.0	0.937	2e-55
117976	111	RecName: Full=Cytochrome c	0.991	1.0	0.945	3e-55
115463957	112	Os05g0420600 [Oryza sativa Japonica Grou	1.0	1.0	0.919	3e-55
388508586	113	unknown [Lotus japonicus] gi|388517779|g	1.0	0.991	0.919	5e-55

>gi|225460129|ref|XP_002277692.1| PREDICTED: cytochrome c [Vitis vinifera] gi|183393002|gb|ACC61674.1| mitochondrial cytochrome c [Vitis vinifera] gi|297741010|emb|CBI31322.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 109/112 (97%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNP AGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNPAAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQATA 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357133628|ref|XP_003568426.1| PREDICTED: cytochrome c-like [Brachypodium distachyon]

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/112 (93%), Positives = 109/112 (97%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS+A
Sbjct: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSSA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLI+YLKE+T+
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLISYLKEATS 112

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457373|ref|XP_004146423.1| PREDICTED: cytochrome c-like [Cucumis sativus]

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/111 (95%), Positives = 107/111 (96%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGN K GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKTGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           NK MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234910|ref|NP_192742.1| cytochrome c-2 [Arabidopsis thaliana] gi|297809203|ref|XP_002872485.1| cytochrome C-2 [Arabidopsis lyrata subsp. lyrata] gi|27734261|sp|Q9T0G2.1|CYC3_ARATH RecName: Full=Probable cytochrome c At4g10040 gi|4539007|emb|CAB39628.1| cytochrome c [Arabidopsis thaliana] gi|7267700|emb|CAB78127.1| cytochrome c [Arabidopsis thaliana] gi|15028283|gb|AAK76618.1| putative cytochrome c protein [Arabidopsis thaliana] gi|19310747|gb|AAL85104.1| putative cytochrome c protein [Arabidopsis thaliana] gi|21592668|gb|AAM64617.1| cytochrome c [Arabidopsis thaliana] gi|297318322|gb|EFH48744.1| cytochrome C-2 [Arabidopsis lyrata subsp. lyrata] gi|332657432|gb|AEE82832.1| cytochrome c-2 [Arabidopsis thaliana]

 Score =  221 bits (564), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 108/112 (96%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNPKAGEKIF+TKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727611|ref|NP_001235631.1| uncharacterized protein LOC100500015 [Glycine max] gi|255628507|gb|ACU14598.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 107/112 (95%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASFEEAPPGN K GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFEEAPPGNSKNGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773266|emb|CAN60482.1| hypothetical protein VITISV_033958 [Vitis vinifera]

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/112 (93%), Positives = 108/112 (96%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNP AGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGR SGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNPAAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRLSGTTPGYSYSAA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQATA 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806238|ref|NP_001240955.1| uncharacterized protein LOC100817799 [Glycine max] gi|255644963|gb|ACU22981.1| unknown [Glycine max]

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/112 (93%), Positives = 107/112 (95%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGN K GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFDEAPPGNSKNGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117976|sp|P00051.1|CYC_CUCMA RecName: Full=Cytochrome c

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 107/111 (96%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+EAPPGN KAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K  AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 61  KNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

Source: Cucurbita maxima

Species: Cucurbita maxima

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115463957|ref|NP_001055578.1| Os05g0420600 [Oryza sativa Japonica Group] gi|122169096|sp|Q0DI31.1|CYC_ORYSJ RecName: Full=Cytochrome c gi|152013457|sp|A2Y4S9.1|CYC_ORYSI RecName: Full=Cytochrome c gi|169786|gb|AAA63515.1| cytochrome c [Oryza sativa Indica Group] gi|218249|dbj|BAA02159.1| cytochrome C [Oryza sativa Japonica Group] gi|48475175|gb|AAT44244.1| Cytochrome c [Oryza sativa Japonica Group] gi|53982673|gb|AAV25652.1| putative cytochrome c [Oryza sativa Japonica Group] gi|113579129|dbj|BAF17492.1| Os05g0420600 [Oryza sativa Japonica Group] gi|125552380|gb|EAY98089.1| hypothetical protein OsI_20008 [Oryza sativa Indica Group] gi|215765688|dbj|BAG87385.1| unnamed protein product [Oryza sativa Japonica Group] gi|222631633|gb|EEE63765.1| hypothetical protein OsJ_18585 [Oryza sativa Japonica Group]

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 107/112 (95%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508586|gb|AFK42359.1| unknown [Lotus japonicus] gi|388517779|gb|AFK46951.1| unknown [Lotus japonicus]

 Score =  218 bits (554), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 108/112 (96%)

Query: 1   MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MA+F+EAPPG+ KAGEKIFK KCAQCHTV +GAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MATFDEAPPGDTKAGEKIFKIKCAQCHTVDQGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           NK MAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2140573	112	CYTC-2 "cytochrome c-2" [Arabi	1.0	1.0	0.946	1.4e-55
UNIPROTKB|P00054	111	P00054 "Cytochrome c" [Sesamum	0.991	1.0	0.900	1.3e-52
TAIR|locus:2017729	114	CYTC-1 "CYTOCHROME C-1" [Arabi	1.0	0.982	0.910	1.7e-52
UNIPROTKB|P99999	105	CYCS "Cytochrome c" [Homo sapi	0.910	0.971	0.656	1.7e-34
UNIPROTKB|P99998	105	CYCS "Cytochrome c" [Pan trogl	0.910	0.971	0.656	1.7e-34
UNIPROTKB|Q6WUX8	105	CYCS "Cytochrome c" [Gorilla g	0.910	0.971	0.656	1.7e-34
UNIPROTKB|P00002	105	CYCS "Cytochrome c" [Macaca mu	0.910	0.971	0.647	5.8e-34
UNIPROTKB|C9JFR7	101	CYCS "Cytochrome c" [Homo sapi	0.892	0.990	0.66	7.4e-34
RGD|2452	105	Cyct "cytochrome c, testis" [R	0.919	0.980	0.650	1.2e-33
UNIPROTKB|P00014	105	CYCS "Cytochrome c" [Macropus	0.910	0.971	0.637	1.5e-33

TAIR|locus:2140573 CYTC-2 "cytochrome c-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 106/112 (94%), Positives = 108/112 (96%)

Query:     1 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
             MASF+EAPPGNPKAGEKIF+TKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct:     1 MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query:    61 NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             NK MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct:    61 NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0020037 "heme binding" evidence=IEA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|P00054 P00054 "Cytochrome c" [Sesamum indicum (taxid:4182)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 100/111 (90%), Positives = 106/111 (95%)

Query:     2 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
             ASF++APPG+ K+GEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN
Sbjct:     1 ASFBZAPPGBVKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query:    62 KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             K MAVIW E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct:    61 KNMAVIWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2017729 CYTC-1 "CYTOCHROME C-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 102/112 (91%), Positives = 104/112 (92%)

Query:     1 MASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
             MASF+EAPPGN KAGEKIF+TKCAQCHTV  GAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct:     1 MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query:    61 NKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             NK  AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct:    61 NKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0020037 "heme binding" evidence=IEA

GO:0008283 "cell proliferation" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

UNIPROTKB|P99999 CYCS "Cytochrome c" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/102 (65%), Positives = 83/102 (81%)

Query:    10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
             G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW 
Sbjct:     2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 61

Query:    70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
             E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    62 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103

GO:0005506 "iron ion binding" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0006915 "apoptotic process" evidence=IDA;TAS

GO:0020037 "heme binding" evidence=TAS

GO:0006309 "apoptotic DNA fragmentation" evidence=IMP

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=TAS

GO:0045333 "cellular respiration" evidence=TAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=TAS

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0005829 "cytosol" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|P99998 CYCS "Cytochrome c" [Pan troglodytes (taxid:9598)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/102 (65%), Positives = 83/102 (81%)

Query:    10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
             G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW 
Sbjct:     2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 61

Query:    70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
             E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    62 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|Q6WUX8 CYCS "Cytochrome c" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 67/102 (65%), Positives = 83/102 (81%)

Query:    10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
             G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW 
Sbjct:     2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 61

Query:    70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
             E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    62 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|P00002 CYCS "Cytochrome c" [Macaca mulatta (taxid:9544)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 66/102 (64%), Positives = 82/102 (80%)

Query:    10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
             G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   + W 
Sbjct:     2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWG 61

Query:    70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
             E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    62 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

UNIPROTKB|C9JFR7 CYCS "Cytochrome c" [Homo sapiens (taxid:9606)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 66/100 (66%), Positives = 81/100 (81%)

Query:    10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
             G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW 
Sbjct:     2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 61

Query:    70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
             E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK+
Sbjct:    62 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKK 101

GO:0005506 "iron ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

RGD|2452 Cyct "cytochrome c, testis" [Rattus norvegicus (taxid:10116)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 67/103 (65%), Positives = 81/103 (78%)

Query:    10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
             G+ +AG+KIF  KCAQCHTV KG  HK GPNL GLFGR++G  PG+SY+ ANK   VIW 
Sbjct:     2 GDAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWT 61

Query:    70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLKE+T+
Sbjct:    62 EETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIQYLKEATS 104

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA;ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA;ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0042743 "hydrogen peroxide metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|P00014 CYCS "Cytochrome c" [Macropus giganteus (taxid:9317)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/102 (63%), Positives = 81/102 (79%)

Query:    10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
             G+ + G+KIF  KCAQCHTV KG  HK GPNLNG+FGR++G  PG++Y+ ANK   +IW 
Sbjct:     2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGIFGRKTGQAPGFTYTDANKNKGIIWG 61

Query:    70 EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
             E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    62 EDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103

GO:0005829 "cytosol" evidence=ISS

GO:0006309 "apoptotic DNA fragmentation" evidence=ISS

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00015	CYC2_MOUSE	No assigned EC number	0.6407	0.9196	0.9809	yes	no
P10715	CYC2_RAT	No assigned EC number	0.6504	0.9196	0.9809	yes	no
P00002	CYC_MACMU	No assigned EC number	0.6470	0.9107	0.9714	yes	no
P00014	CYC_MACGI	No assigned EC number	0.6372	0.9107	0.9714	N/A	no
Q52V08	CYC_MACSY	No assigned EC number	0.6470	0.9107	0.9714	N/A	no
P00040	CYC_SCHGR	No assigned EC number	0.6571	0.9375	0.9722	N/A	no
P15451	CYC_CHLRE	No assigned EC number	0.7142	1.0	1.0	N/A	no
P99999	CYC_HUMAN	No assigned EC number	0.6568	0.9107	0.9714	yes	no
P00037	CYC_SAMCY	No assigned EC number	0.6380	0.9375	0.9722	N/A	no
P12831	CYC_SARPE	No assigned EC number	0.6095	0.9375	0.9722	N/A	no
P62772	CYC_BRANA	No assigned EC number	0.9279	0.9910	1.0	N/A	no
P62773	CYC_BRAOL	No assigned EC number	0.9279	0.9910	1.0	N/A	no
Q4UEA0	CYC_THEAN	No assigned EC number	0.6320	0.9375	0.9130	yes	no
P00073	CYC_SPIOL	No assigned EC number	0.8454	0.9821	0.9909	N/A	no
P00072	CYC_FAGES	No assigned EC number	0.8727	0.9821	0.9909	N/A	no
P00071	CYC_PASSA	No assigned EC number	0.8378	0.9910	1.0	N/A	no
P00070	CYC_HELAN	No assigned EC number	0.8928	1.0	1.0	N/A	no
P00075	CYC_ENTIN	No assigned EC number	0.7117	0.9910	1.0	N/A	no
P00074	CYC_GINBI	No assigned EC number	0.8018	0.9910	0.9823	N/A	no
Q640U4	CYC1_XENTR	No assigned EC number	0.6310	0.9196	0.9809	yes	no
Q5RFH4	CYC_PONAB	No assigned EC number	0.6568	0.9107	0.9714	yes	no
P00059	CYC_ABUTH	No assigned EC number	0.9099	0.9910	1.0	N/A	no
P00058	CYC_GOSBA	No assigned EC number	0.9009	0.9910	1.0	N/A	no
P00039	CYC_MANSE	No assigned EC number	0.6190	0.9375	0.9722	N/A	no
P00038	CYC_APIME	No assigned EC number	0.625	0.9285	0.9629	yes	no
P00051	CYC_CUCMA	No assigned EC number	0.9459	0.9910	1.0	N/A	no
P00036	CYC_LUCCU	No assigned EC number	0.6	0.9375	0.9722	N/A	no
P00053	CYC_CANSA	No assigned EC number	0.8738	0.9910	1.0	N/A	no
P00052	CYC_VIGRR	No assigned EC number	0.9369	0.9910	1.0	N/A	no
Q6WUX8	CYC_GORGO	No assigned EC number	0.6568	0.9107	0.9714	N/A	no
P00054	CYC_SESIN	No assigned EC number	0.9009	0.9910	1.0	N/A	no
P00057	CYC_RICCO	No assigned EC number	0.8918	0.9910	1.0	N/A	no
P00056	CYC_MAIZE	No assigned EC number	0.9009	0.9910	1.0	N/A	no
O23138	CYC2_ARATH	No assigned EC number	0.9107	1.0	0.9824	no	no
Q9T0G2	CYC3_ARATH	No assigned EC number	0.9464	1.0	1.0	yes	no
P00007	CYC_HIPAM	No assigned EC number	0.6372	0.9107	0.9714	N/A	no
Q0DI31	CYC_ORYSJ	No assigned EC number	0.9196	1.0	1.0	yes	no
P99998	CYC_PANTR	No assigned EC number	0.6568	0.9107	0.9714	yes	no
P00064	CYC_ALLPO	No assigned EC number	0.8648	0.9910	1.0	N/A	no
P00065	CYC_ARUMA	No assigned EC number	0.9279	0.9910	1.0	N/A	no
P00066	CYC_NIGDA	No assigned EC number	0.8108	0.9910	1.0	N/A	no
P00067	CYC_TROMA	No assigned EC number	0.8738	0.9910	1.0	N/A	no
P00060	CYC_SOLLC	No assigned EC number	0.9099	0.9910	1.0	N/A	no
P00061	CYC_SOLTU	No assigned EC number	0.9009	0.9910	1.0	N/A	no
P00062	CYC_SAMNI	No assigned EC number	0.9369	0.9910	1.0	N/A	no
P00063	CYC_ACENE	No assigned EC number	0.9099	0.9910	0.9910	N/A	no
A2Y4S9	CYC_ORYSI	No assigned EC number	0.9196	1.0	1.0	N/A	no
O22642	CYC_FRIAG	No assigned EC number	0.8839	1.0	0.9911	N/A	no
P00068	CYC_WHEAT	No assigned EC number	0.8738	0.9910	0.9910	N/A	no
P00069	CYC_GUIAB	No assigned EC number	0.8468	0.9910	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021810001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence (Mitochondrial cytochrome c);; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain (By similarity) (112 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020558001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (310 aa)				•	•		•		0.763
	GSVIVG00034552001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (421 aa)				•	•		•		0.517
	GSVIVG00020593001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (276 aa)				•		•	•		0.509
	GSVIVG00032161001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (428 aa)							•		0.483
	GSVIVG00026455001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (563 aa)							•		0.483
	GSVIVG00015058001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (516 aa)							•		0.483
	PPO	RecName- Full=Polyphenol oxidase, chloroplastic; Short=PPO; EC=1.10.3.1; AltName- Full=Catechol [...] (607 aa)							•		0.483
	GSVIVG00010127001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1; Flags- Fragment;; Interconversion of [...] (305 aa)							•		0.483
	GSVIVG00034368001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (159 aa)					•		•		0.472
	GSVIVG00037523001	SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (352 aa)							•		0.468

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
PTZ00048	115	PTZ00048, PTZ00048, cytochrome c; Provisional	4e-47
COG3474	135	COG3474, COG3474, Cytochrome c2 [Energy production	2e-46
PTZ00405	114	PTZ00405, PTZ00405, cytochrome c; Provisional	4e-37
pfam00034	81	pfam00034, Cytochrom_C, Cytochrome c	6e-10
pfam13442	67	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase,	8e-06
TIGR02603	133	TIGR02603, CxxCH_TIGR02603, putative heme-binding	1e-04
COG2010	150	COG2010, CccA, Cytochrome c, mono- and diheme vari	1e-04

>gnl|CDD|185414 PTZ00048, PTZ00048, cytochrome c; Provisional

 Score =  146 bits (371), Expect = 4e-47
 Identities = 62/104 (59%), Positives = 81/104 (77%), Gaps = 1/104 (0%)

Query: 8   PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
           P G+ K G K+FK KCAQCHT+ KG   KQGPNL+G +GR+SG+   + YS ANK   ++
Sbjct: 11  PEGDAKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGS-ADFPYSDANKNSGIV 69

Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           W +K L++YL+NPK YIPGTKMVF G+KK ++RADLIAYLKE++
Sbjct: 70  WSDKHLFEYLVNPKLYIPGTKMVFAGIKKEKERADLIAYLKEAS 113

Length = 115

>gnl|CDD|226005 COG3474, COG3474, Cytochrome c2 [Energy production and conversion]

 Score =  145 bits (368), Expect = 2e-46
 Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 3/102 (2%)

Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA--V 66
            G+  AGEK+FK KC  CH++ KG  +K GP+L G+ GR +G+  G+SYSAA K     +
Sbjct: 28  LGDAAAGEKVFK-KCQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGI 86

Query: 67  IWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           +W+E  L ++L  PKKY+PGTKM F GLKK QDRADLIAYLK
Sbjct: 87  VWDEDNLDEFLTAPKKYVPGTKMAFAGLKKDQDRADLIAYLK 128

Length = 135

>gnl|CDD|173596 PTZ00405, PTZ00405, cytochrome c; Provisional

 Score =  121 bits (304), Expect = 4e-37
 Identities = 57/101 (56%), Positives = 73/101 (72%)

Query: 8   PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
           PPG+ + GEK+FK + AQCHT  KG  +  GPNL G+  R+SGT  G++YS AN    VI
Sbjct: 10  PPGDAERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVI 69

Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           W  + L  YL NPKK++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct: 70  WTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLE 110

Length = 114

>gnl|CDD|215669 pfam00034, Cytochrom_C, Cytochrome c

 Score = 51.0 bits (122), Expect = 6e-10
 Identities = 22/95 (23%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 14  AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTL 73
            G+K+F   CA CH    G G   GP L G              S A    A        
Sbjct: 1   KGKKLFAANCAACHG-ADGKGAGGGPALAGAPAGYLLDALAAIKSGARGIGAQAV----- 54

Query: 74  YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
                     +         L   ++RA L AY++
Sbjct: 55  ----------MSKAPGNATQL-TDEERAALAAYIR 78

The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family. Length = 81

>gnl|CDD|205620 pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III

 Score = 40.0 bits (94), Expect = 8e-06
 Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 31/98 (31%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
            +  AGE ++   CA CH    G G   GP    LFG                       
Sbjct: 1   ADAAAGEALYDANCAACH----GTG-GAGPP---LFGDA-------------------LA 33

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
            + L   +LN K  +P     F G    ++   L AYL
Sbjct: 34  PEALIKIVLNGKGAMPA----FGGDLSDEEIEALAAYL 67

Length = 67

>gnl|CDD|131652 TIGR02603, CxxCH_TIGR02603, putative heme-binding domain, Pirellula/Verrucomicrobium type

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQS 49
          G+ + G+ ++  +C  CH  + G G   GP+L G  G + 
Sbjct: 1  GDAEKGKAVYAQRCYVCHR-IGGEGVDVGPDLTG-VGTKG 38

This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190). Length = 133

>gnl|CDD|224921 COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 5   EEAPPGNPKAGEKIFKTKCAQCHTV-VKGAG-HKQGPNLNGLFGRQSGTTPGYSYSAANK 62
             AP     AG  +F   CA CH   + GAG    GP L G      G  P   ++  + 
Sbjct: 44  AAAPAAARGAGLALFLGNCAACHGPNLGGAGPLLDGPALAG------GDPPYIVWTILH- 96

Query: 63  GMAVIWEEKTLYDYLLNPK------KYIPGTKMVFPGLK-KPQDRADLIAYLKE 109
           G    W E   +   L+ +       Y+    +     +   +D A + AYLK 
Sbjct: 97  GTRGGWGEMPAFADTLSDEQIAAVAAYV-MPDLPGMQAQLSDEDVAAIAAYLKS 149

Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PTZ00405	114	cytochrome c; Provisional	99.97
COG3474	135	Cytochrome c2 [Energy production and conversion]	99.97
PTZ00048	115	cytochrome c; Provisional	99.96
KOG3453	110	consensus Cytochrome c [Energy production and conv	99.75
TIGR03872	133	cytochrome_MoxG cytochrome c(L), periplasmic. This	99.69
TIGR02603	133	CxxCH_TIGR02603 putative heme-binding domain, Pire	99.66
PRK13617	170	psbV cytochrome c-550; Provisional	99.6
CHL00183	108	petJ cytochrome c553; Provisional	99.59
PF13442	67	Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type,	99.59
PF00034	91	Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cyt	99.58
TIGR03874	143	4cys_cytochr c-type cytochrome, methanol metabolis	99.58
TIGR03045	159	PS_II_C550 cytochrome c-550. Members of this prote	99.57
CHL00133	163	psbV photosystem II cytochrome c550; Validated	99.57
PRK13618	163	psbV cytochrome c-550; Provisional	99.57
PRK13621	170	psbV cytochrome c-550; Provisional	99.55
TIGR03046	155	PS_II_psbV2 photosystem II cytochrome PsbV2. Membe	99.54
COG2863	121	Cytochrome c553 [Energy production and conversion]	99.52
PRK13620	215	psbV cytochrome c-550; Provisional	99.52
PRK13697	111	cytochrome c6; Provisional	99.52
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	99.51
PRK14487	217	cbb3-type cytochrome c oxidase subunit II; Provisi	99.45
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	99.43
PRK13619	160	psbV cytochrome c-550; Provisional	99.42
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	99.38
PRK13622	180	psbV cytochrome c-550; Provisional	99.28
COG2010	150	CccA Cytochrome c, mono- and diheme variants [Ener	99.25
COG3258	293	Cytochrome c [Energy production and conversion]	99.21
PF14495	135	Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC	99.16
TIGR00781	232	ccoO cytochrome c oxidase, cbb3-type, subunit II.	99.13
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	99.11
COG4654	110	Cytochrome c551/c552 [Energy production and conver	98.9
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	98.72
PF02433	226	FixO: Cytochrome C oxidase, mono-heme subunit/FixO	98.46
PRK14485	712	putative bifunctional cbb3-type cytochrome c oxida	98.27
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	98.22
PF09086	98	DUF1924: Domain of unknown function (DUF1924); Int	98.03
COG2993	227	CcoO Cbb3-type cytochrome oxidase, cytochrome c su	97.92
COG3245	126	CycB Cytochrome c5 [Energy production and conversi	97.75
PF09098	167	Dehyd-heme_bind: Quinohemoprotein amine dehydrogen	97.72
PF02167	219	Cytochrom_C1: Cytochrome C1 family; InterPro: IPR0	97.42
PF06537	499	DUF1111: Protein of unknown function (DUF1111); In	97.39
PF10643	233	Cytochrome-c551: Photosystem P840 reaction-centre	96.93
PF14376	137	Haem_bd: Haem-binding domain	96.88
COG3748	407	Predicted membrane protein [Function unknown]	96.82
KOG3052	311	consensus Cytochrome c1 [Energy production and con	96.6
TIGR03806	317	chp_HNE_0200 conserved hypothetical protein, HNE_0	96.52
COG1858	364	MauG Cytochrome c peroxidase [Inorganic ion transp	95.94
TIGR02162	386	torC trimethylamine-N-oxide reductase c-type cytoc	95.79
COG3488	481	Predicted thiol oxidoreductase [Energy production	95.46
PRK15032	390	trimethylamine N-oxide reductase cytochrome c-type	95.16
COG3258	293	Cytochrome c [Energy production and conversion]	94.89
PF09626	120	DHC: Dihaem cytochrome c; InterPro: IPR018588 Diha	94.42
PF03150	159	CCP_MauG: Di-haem cytochrome c peroxidase; InterPr	93.5
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	91.02
PF07635	59	PSCyt1: Planctomycete cytochrome C; InterPro: IPR0	88.47
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	86.97
COG1858	364	MauG Cytochrome c peroxidase [Inorganic ion transp	84.91

>PTZ00405 cytochrome c; Provisional

Probab=99.97  E-value=2.4e-31  Score=162.99  Aligned_cols=108  Identities=53%  Similarity=0.938  Sum_probs=99.6

Q ss_pred             CCCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033769            5 EEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI   84 (112)
Q Consensus         5 ~~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~   84 (112)
                      .+++.+++++|+++|..+|.+||.++.++.+.+||+|.++.+|..+..++|.|+..++..+++|+.+.|..||.+|...+
T Consensus         7 ~~~~~gd~~~G~~lF~~~C~aCH~~~~~~~~~vGP~L~gv~gR~~g~~~~~~YS~al~~~g~~wd~~~L~~~l~~P~~~~   86 (114)
T PTZ00405          7 APLPPGDAERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFM   86 (114)
T ss_pred             ccCCccCHHHHHHHHHhhhHhhCCCCCCCCCCcCCCccccccCccccccCccccHHHHhccCcCCHHHHHHHHHCHHhhC
Confidence            45677899999999998899999987555578999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           85 PGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        85 ~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      |+++|+|.++.+++|+++||+||++|+.
T Consensus        87 pgt~M~f~gl~~~~dr~~liaYL~sl~~  114 (114)
T PTZ00405         87 PGTKMSFAGIKKPQERADVIAYLETLKD  114 (114)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999863

>COG3474 Cytochrome c2 [Energy production and conversion]

Probab=99.97  E-value=4.4e-30  Score=157.69  Aligned_cols=101  Identities=55%  Similarity=1.016  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhcccc--ceeeCHHHHHHHHhCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGM--AVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      +++..|+.+|.+ |..||+++.++.+.+||.|.++.+|..++.++|.|+..++..  +++|+.+.|..||.+|...+||+
T Consensus        29 ~da~~G~~vFkk-C~~CH~i~~~g~nkvGP~L~gVvGR~ags~egf~YS~Amk~~~~g~vWd~~~L~~fL~~Pkk~vpGT  107 (135)
T COG3474          29 GDAAAGEKVFKK-CQACHSIEKGGPNKVGPHLWGVVGRPAGSVEGFSYSAAMKKAGGGIVWDEDNLDEFLTAPKKYVPGT  107 (135)
T ss_pred             ccHHHhHHHHHH-HHHhhccccCCCCCCCCccccccCccccccCCcccCHHHHhccCCcccCHHHHHHHHhChhhhCCCc
Confidence            899999999996 999999998778999999999999999999999999988888  89999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .|.|.++..++|+.+||+||++++
T Consensus       108 kM~faGlkk~~dradlIAYLk~~~  131 (135)
T COG3474         108 KMAFAGLKKDQDRADLIAYLKSLP  131 (135)
T ss_pred             ceeecCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999976

>PTZ00048 cytochrome c; Provisional

Probab=99.96  E-value=1.3e-28  Score=151.33  Aligned_cols=105  Identities=59%  Similarity=1.133  Sum_probs=95.4

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ++.+++++|+++|+++|..||++++.+...+||+|.++.+|..+. ++|.|+..+...++.|+++.|..||.+|....|+
T Consensus        10 ~~~~~~~~G~~~f~~~C~~CH~~~~~g~~~~GP~L~Gi~gR~~g~-~~~~ys~~~~~~g~~wt~~~L~~~l~~P~~~~pg   88 (115)
T PTZ00048         10 VPEGDAKKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGS-ADFPYSDANKNSGIVWSDKHLFEYLVNPKLYIPG   88 (115)
T ss_pred             CCcccHHHHHHHHHhhhhhcCCCcCCCCCCcCCcccccccccccC-CCCccchhhhhcccccCHHHHHHHHhCcCccCCC
Confidence            556789999999998999999998766678999999999999887 8898888777788999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           87 TKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        87 ~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +.|+|.++.+++|+++|++||++|+.
T Consensus        89 t~M~~~gl~~~~~~~~liaYL~s~~~  114 (115)
T PTZ00048         89 TKMVFAGIKKEKERADLIAYLKEASS  114 (115)
T ss_pred             CccCcCCCCCHHHHHHHHHHHHHhcc
Confidence            99999999889999999999999873

>KOG3453 consensus Cytochrome c [Energy production and conversion]

Probab=99.75  E-value=1.8e-18  Score=103.32  Aligned_cols=105  Identities=63%  Similarity=1.083  Sum_probs=96.7

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ..+.+.+.|.++|.+.|..||.++..+...++|.|.++.++..+...+|.++...+..|++|..+.|..+|.+|....|+
T Consensus         4 ~~~~d~~~g~~~f~~rc~qch~~~~~~~~k~~p~l~gl~g~~~g~~~~~sy~~a~KnKgV~wgE~tl~eyLenpkkyipG   83 (110)
T KOG3453|consen    4 VPAGDVEKGKKIFPQRCAQCHTVEKGGFHKTGPNLHGLFGRQLGQAAGLSYTDANKNKGVTWGEDTLMEYLENPKKYIPG   83 (110)
T ss_pred             ccccccccccccceeeccccccccCCcccccCCcchhhHHHhhccccCcceeecccCCceEEcchhHHHHHhCCCccccc
Confidence            45678899999999999999999876777899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +.|-|.++....|..|+++|+.+-+
T Consensus        84 tKmifaGikk~~eraDlIayl~ka~  108 (110)
T KOG3453|consen   84 TKMIFAGIKKKAERADLIAYLKKAT  108 (110)
T ss_pred             cceeecccCchHHHHHHHHHHHHhc
Confidence            9999999987799999999997643

>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic

Probab=99.69  E-value=1.4e-16  Score=100.16  Aligned_cols=82  Identities=22%  Similarity=0.361  Sum_probs=57.7

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      ...++.|+++|..+|+.||+.++.|  .++|.|.+....+..                ....+.|.+.+.++.    ..+
T Consensus        41 ~~~~a~G~~ly~~~CAaCHG~~g~G--~~gP~L~~~~~~~~~----------------~~~~~~l~~~i~~G~----~g~   98 (133)
T TIGR03872        41 AEALKKGESLFATACSGCHGHLAEG--KLGPGLNDDYWTYPK----------------NTTDKGLFETIFGGA----NGM   98 (133)
T ss_pred             HHHHHHHHHHHHHhhHHhCCCCCCC--CCCCCCcCcccccCC----------------cccHHHHHHHHHcCC----CCC
Confidence            3456899999999999999997654  357998764211100                002445667666653    235


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           89 M-VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        89 m-~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      | +|...|+++||++|++||+++.+
T Consensus        99 Mp~~~~~LsdeeI~aLaaYI~sl~~  123 (133)
T TIGR03872        99 MGPQYGNLTLDEMLQIMAWIRHLYT  123 (133)
T ss_pred             CcccccCCCHHHHHHHHHHHHHhCC
Confidence            6 57788999999999999999864

This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.

>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type

Probab=99.66  E-value=4.1e-16  Score=98.19  Aligned_cols=35  Identities=26%  Similarity=0.690  Sum_probs=29.6

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCcc
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLF   45 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~   45 (112)
                      +++++|+.+|.+.|+.||++++.+ ...||.|.++.
T Consensus         1 gd~~~G~~~f~~~C~~CH~~~g~g-~~~gP~L~~~~   35 (133)
T TIGR02603         1 GDAEKGKAVYAQRCYVCHRIGGEG-VDVGPDLTGVG   35 (133)
T ss_pred             CCHHHHHHHHHhHHHHhCCCCCCC-CccCCCccccc
Confidence            478899999998899999998644 46899999864

This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).

>PRK13617 psbV cytochrome c-550; Provisional

Probab=99.60  E-value=2.1e-15  Score=97.24  Aligned_cols=87  Identities=24%  Similarity=0.318  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHhhCcccccccCCC-CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC----
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGA-GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI----   84 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~-~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----   84 (112)
                      ++.++|+++|+.+|+.||...+.. .+.+||+|..+..-.    +.            ..+.+.|.+||++|..+.    
T Consensus        57 ~~~~~G~~~F~~~C~~CH~~g~T~~n~~vg~dL~~L~aa~----p~------------r~nv~aLv~yikdP~sydg~~s  120 (170)
T PRK13617         57 SEIKAGRKVFNTSCGTCHAGGITKTNQNVGLDPETLALAT----PA------------RDNVDALVDYLKDPTSYDGEYS  120 (170)
T ss_pred             HHHHHHHHHHHcchhhhccCCCcCCCCCcCCCHHHHhccC----CC------------CCCHHHHHHHHhChHhhcchhh
Confidence            456899999988999999765422 346899986552211    00            016789999999997655    


Q ss_pred             -----CCC----CCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           85 -----PGT----KMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        85 -----~~~----~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                           |+.    .||-.+.+||+|+.+|++||..++|
T Consensus       121 ~~e~~P~~~~~~imP~~~~LsdeeL~alAayLl~~~k  157 (170)
T PRK13617        121 IADLHPSMRSADLYPAMRDLNDEDLRLMAGYILVAPK  157 (170)
T ss_pred             ccccCccccccccCcccCCCCHHHHHHHHHHHHhccc
Confidence                 543    5663445789999999999998754

>CHL00183 petJ cytochrome c553; Provisional

Probab=99.59  E-value=6.8e-15  Score=89.52  Aligned_cols=84  Identities=21%  Similarity=0.268  Sum_probs=57.8

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ...+++..|+++|+.+|+.||+.   +.+..+|.+....             ..+.... ..+.+.+..+++++..    
T Consensus        21 ~~~a~~~~G~~ly~~~Ca~CHg~---g~~~~~P~~~~~~-------------~~l~~~~-~~~~~~i~~~i~~G~~----   79 (108)
T CHL00183         21 AFAADLDNGEQIFSANCAACHAG---GNNVIMPEKTLKK-------------DALEANS-MNSIEAITYQVTNGKN----   79 (108)
T ss_pred             cccccHHHHHHHHHHHHHHHCCC---CCCCCCCCcccCH-------------HHHhhCc-CCCHHHHHHHHHcCcc----
Confidence            45567889999999999999984   2344577654211             0010001 1156788888888753    


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .|++|.+.+|++|+++|++||.++.
T Consensus        80 ~MP~f~~~Ls~~ei~~i~aYi~~~~  104 (108)
T CHL00183         80 AMPAFGGRLSDEDIEDVANYVLSQA  104 (108)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHhh
Confidence            3446877889999999999999875

>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A

Probab=99.59  E-value=1.6e-15  Score=84.75  Aligned_cols=66  Identities=27%  Similarity=0.577  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV   90 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~   90 (112)
                      +++.|+++|..+|+.||+.+     ..||+|.+.                      .|+.+.|..++.++..    .|++
T Consensus         2 ~~~~G~~ly~~~C~~CH~~~-----~~gp~l~~~----------------------~~~~~~l~~~i~~g~~----~Mp~   50 (67)
T PF13442_consen    2 DAAKGKALYEQNCASCHGPG-----GAGPSLAGK----------------------DWSPEELYNIIRNGRG----GMPP   50 (67)
T ss_dssp             HHHHHHHHHHHHTHHHHGTG-----SSSSTSTHH----------------------HHHHHHHHHHHHHTBT----TBSC
T ss_pred             cHHHHHHHHHhHhHHhcCCC-----ccCccchhh----------------------hhhHHHHHHHHHhCcC----CCCC
Confidence            57899999999999999943     234777632                      2356788899888862    4446


Q ss_pred             CCCCCCHHHHHHHHHHH
Q 033769           91 FPGLKKPQDRADLIAYL  107 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl  107 (112)
                      |...+|++|+++|++||
T Consensus        51 ~~~~ls~~e~~~l~~yi   67 (67)
T PF13442_consen   51 FGGQLSDEEIEALAAYI   67 (67)
T ss_dssp             TTTTSTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHC
Confidence            77778999999999997

...

>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues

Probab=99.58  E-value=3.3e-17  Score=95.37  Aligned_cols=36  Identities=31%  Similarity=0.680  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhhCcccccccCCCCCCC-CCCCCCccCC
Q 033769           12 PKAGEKIFKTKCAQCHTVVKGAGHKQ-GPNLNGLFGR   47 (112)
Q Consensus        12 ~~~G~~lf~~~C~~CH~~~~~~~~~~-gP~l~~~~~~   47 (112)
                      +++|++||..+|++||+.++.+.... +|.|.++..+
T Consensus         1 a~~G~~l~~~~C~~CH~~~~~~~~~~~~p~l~~~~~~   37 (91)
T PF00034_consen    1 AARGKELFQANCAACHGADGNGDGGGPGPDLTGIGKR   37 (91)
T ss_dssp             HHHHHHHHHHHTTTTHBTSTTSSSSSTSHBHTTHTHH
T ss_pred             ChhHHHHHhCcChhcCCCCCcCCccccCccccCcccc
Confidence            47999999778999999987554333 6888876543

The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....

>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related

Probab=99.58  E-value=1.1e-14  Score=92.06  Aligned_cols=80  Identities=18%  Similarity=0.266  Sum_probs=58.8

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC---CC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP---GT   87 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~   87 (112)
                      ..-.|+++|..+|+.||+.+|.|. ...|+|.+..-+                    .+...|.+.|.++.....   ..
T Consensus        32 ~~~~G~~lY~~~CAaCHG~dG~G~-~~~P~Lans~v~--------------------~s~~nli~vIl~G~~~~~~~~~~   90 (143)
T TIGR03874        32 FTYSGYRRYHSECHVCHGPDGMGS-TYAPALKDSVKR--------------------MSYGDFLGVVANGRQNVSAAQNN   90 (143)
T ss_pred             ccccHHHHHHHHHHHhCCCCCCCC-CCCCCCCCcccc--------------------CCHHHHHHHHHhCCCCCCCCCCC
Confidence            345799999999999999987653 367888632111                    157789999988875322   13


Q ss_pred             CC-CCCCCCCHH-HHHHHHHHHHhhc
Q 033769           88 KM-VFPGLKKPQ-DRADLIAYLKEST  111 (112)
Q Consensus        88 ~m-~~~~~l~~~-ei~~l~ayl~sl~  111 (112)
                      .| +|...++|+ ||++|++||+..+
T Consensus        91 ~MPaF~~~LsD~~eIa~L~~YLR~~~  116 (143)
T TIGR03874        91 VMPAFGDNPNVMCYLDDLYVYLRARG  116 (143)
T ss_pred             CCCCccccCCcHHHHHHHHHHHHhcc
Confidence            45 698888886 9999999998754

This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.

>TIGR03045 PS_II_C550 cytochrome c-550

Probab=99.57  E-value=9e-15  Score=94.01  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=59.5

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCC-CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGA-GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY---   83 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~-~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---   83 (112)
                      ..+++++|+++|+.+|+.||...... ...+++.+..+....    +    .        ..+.++|.+||++|...   
T Consensus        47 ~~~~~~~Gk~lF~~~Ca~CH~~G~~~~~p~vgl~l~~L~~A~----~----~--------r~~v~~Lv~~iknP~~~dg~  110 (159)
T TIGR03045        47 TEEQVKRGKRLFNTACGTCHVGGITKTNPNVGLDPEALALAT----P----P--------RDNVEALVDYMKNPTSYDGE  110 (159)
T ss_pred             ChHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCChhhHHhcC----C----C--------ccCHHHHHHHHhCccccccc
Confidence            45788999999999999999532111 123444444432210    0    0        01578899999999754   


Q ss_pred             ----------CCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           84 ----------IPGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        84 ----------~~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                                .++..||..+.||++|+.+|++||....+
T Consensus       111 ~~~~~~hp~~k~~~~mP~~~~LsdeEL~avAaYIl~q~~  149 (159)
T TIGR03045       111 ESIAELHPSIRSADIFPKMRNLTDEDLRLIAGHILVQPK  149 (159)
T ss_pred             chhhhcccccCcccccCCcCCCCHHHHHHHHHHHHHhcc
Confidence                      34566765556789999999999987643

Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.

>CHL00133 psbV photosystem II cytochrome c550; Validated

Probab=99.57  E-value=8.2e-15  Score=94.35  Aligned_cols=88  Identities=19%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCC-CCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC----
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKG-AGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK----   82 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~-~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----   82 (112)
                      ..+++++|+++|+.+|+.||..... ....+++.+..+.+    ..+            ...+.++|.+||++|..    
T Consensus        48 t~~~~~~Gk~lF~~~CaaCH~~G~~~~~p~vgl~l~~L~~----A~~------------~r~~~~~Lv~~iknP~~ydg~  111 (163)
T CHL00133         48 TPEQVKRGKRLFNASCGACHVGGITKTNPNVGLDPEALSL----ATP------------PRDNIEALVDYMKNPTTYDGL  111 (163)
T ss_pred             CHHHHHHHHHHHHhhHHHhCCCCCCCCCCCCCCCHHHHhh----cCC------------CcccHHHHHHHHhCcccccch
Confidence            4457899999999899999962110 11233444433321    000            01157899999999977    


Q ss_pred             ---------CCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           83 ---------YIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        83 ---------~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                               ..++..||-.+.|||+|+.+|++||....
T Consensus       112 ~~i~~~~~~~K~~~~MPa~~~LsdeEL~aVAaYIl~q~  149 (163)
T CHL00133        112 ESIAEIHPSIKSADIFPKMRSLTDEDLYAIAGHILLQP  149 (163)
T ss_pred             HHHHHhhcccCccccCCCCCCCCHHHHHHHHHHHHhcc
Confidence                     33455676336678999999999997643

>PRK13618 psbV cytochrome c-550; Provisional

Probab=99.57  E-value=1.5e-14  Score=93.20  Aligned_cols=90  Identities=22%  Similarity=0.277  Sum_probs=62.3

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY---   83 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---   83 (112)
                      ...+++++|+++|+.+|+.||.   ++....+|.+..-.....+..+.            ..+.+.|..|+++|...   
T Consensus        47 ~s~~~~~~G~~lF~~~Ca~CH~---~G~~~~~p~~~l~~~~La~a~p~------------rd~v~~l~~yik~P~~~Dg~  111 (163)
T PRK13618         47 LSLKQVKEGKRLFNYACAQCHA---GGVTKTNQNVGLEPEALALATPN------------RDNIEGLVDYMKNPTTYDGE  111 (163)
T ss_pred             cChhhHHHHHHHHHHHHHHhcC---CCCCCCCCCcCCChhhhccCCCC------------ccCHHHHHHHHhCchhcccc
Confidence            4457889999999999999994   23456677766321111111110            01568899999999875   


Q ss_pred             ----------CCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           84 ----------IPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        84 ----------~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                .+...||-.+.|||+|+.+|++||....
T Consensus       112 ~~~~~~h~~ik~~~~mP~~~~Lsd~eL~ava~yll~~~  149 (163)
T PRK13618        112 EEISEIHPSIKSADIFTAMRNLTDKDLEAIAGHILVQP  149 (163)
T ss_pred             chhcccccccCccccCCCCCCCCHHHHHHHHHHHHhcc
Confidence                      4556676555678999999999997654

>PRK13621 psbV cytochrome c-550; Provisional

Probab=99.55  E-value=7e-15  Score=94.66  Aligned_cols=89  Identities=22%  Similarity=0.441  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP--   85 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--   85 (112)
                      ..++.+.|+++|..+|++||.   +|++.+.|..+-......+..+    ..        -..++|.+|+++|....+  
T Consensus        62 s~~d~~~G~~lF~~~Ca~CH~---gG~n~v~p~ktL~~~~L~~a~p----~r--------d~I~~LV~~iknPms~kg~~  126 (170)
T PRK13621         62 SPEQLTDGKQLFDSNCLNCHV---GGATLPNPNVSLSLKDLRGATP----PR--------DNIAALVAYQRDPMSYDGSE  126 (170)
T ss_pred             CHHHHHhHHHHHHHHHHHhcc---CCCCCcCCCCCCCHHHHhcCCC----ch--------HHHHHHHHHhhCCCCCCccc
Confidence            456789999999999999995   3445666643321110000000    00        145789999999998765  


Q ss_pred             ---CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           86 ---GTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        86 ---~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                         +..|+....|+++|+++|++||....
T Consensus       127 ~~~~~~mps~~~LSdeEL~aIAaYLL~qA  155 (170)
T PRK13621        127 ESYGCRQVPEDWMTDEELQNLAAFILRAA  155 (170)
T ss_pred             ccccccCCccCCCCHHHHHHHHHHHHhhh
Confidence               45565456678999999999997653

>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2

Probab=99.54  E-value=9.5e-15  Score=93.21  Aligned_cols=89  Identities=21%  Similarity=0.408  Sum_probs=57.2

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP--   85 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--   85 (112)
                      ..++..+|+++|+.+|+.||.-   |++.+.|...-......+..+    ..        -..+.|.+|+++|....+  
T Consensus        51 s~~d~~~G~~lF~~~Ca~CH~g---G~n~~~p~~~L~~~~L~~atp----~R--------d~I~~Lv~~iknP~s~kG~~  115 (155)
T TIGR03046        51 TPEQLTDGKNLFESNCLNCHVG---GATLPNPNVSLSLKDLKGATP----PR--------DTIQSLVAYQRDPMSYDGSE  115 (155)
T ss_pred             CHHHHHhHHHHHHHHHHHhccC---CCCCcCCCCCCCHHHHhcCCC----ch--------HHHHHHHHHhhCCcccCccc
Confidence            3457899999999999999963   334444422211110000000    00        024689999999998765  


Q ss_pred             ---CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           86 ---GTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        86 ---~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                         +..|+....|+|+|+++|++||....
T Consensus       116 ~~~~~~mp~~~~LsdeEL~aIAaYLl~qa  144 (155)
T TIGR03046       116 ESYGCRPVPEDWMDDEEVENLAAFILRAA  144 (155)
T ss_pred             ccccccCCcccCCCHHHHHHHHHHHHHhh
Confidence               34565556678999999999997653

Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.

>COG2863 Cytochrome c553 [Energy production and conversion]

Probab=99.52  E-value=1.2e-14  Score=89.14  Aligned_cols=80  Identities=26%  Similarity=0.342  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC-CCCC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK-YIPG   86 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~   86 (112)
                      +..+++.|+.+|.+.|+.||+.++.......|.|.++                        +.++|...|++-+. ..++
T Consensus        20 a~~~a~~G~~~~~~~Ca~CHG~~g~~~~~~~P~Lagq------------------------~~~yl~~~L~a~k~g~r~~   75 (121)
T COG2863          20 AAADAALGKALAAQSCAACHGADGNSPAPGYPKLAGQ------------------------SEAYLEKQLKAYKDGKRPG   75 (121)
T ss_pred             hhhhHHHHHHhhcchhhhccCCCCCCccCCCCCcCCC------------------------CHHHHHHHHHHHHcCCCCc
Confidence            5678899999999889999999987666667777764                        46677777753332 2234


Q ss_pred             CCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ..| .....|||+||.+|++|+.+++
T Consensus        76 ~vM~~~a~~LsD~Di~~lAa~~a~~~  101 (121)
T COG2863          76 PVMNAIASGLSDEDIADLAAYYAAQK  101 (121)
T ss_pred             chHHHHHHhCCHHHHHHHHHHHHhCC
Confidence            466 5666678999999999998875

>PRK13620 psbV cytochrome c-550; Provisional

Probab=99.52  E-value=4.4e-14  Score=93.14  Aligned_cols=89  Identities=20%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCC-C-CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKG-A-GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI   84 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~-~-~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~   84 (112)
                      ...+++++|+++|+..|+.|| +.|. . +..++|+|+.+..-.    +.            ..+.+.|..||++|..+.
T Consensus        99 fS~eq~~~GkqLF~~~Ca~CH-VgG~Tktnp~vgpdLt~LaaAt----pp------------Rdn~e~Lv~wLkdP~syd  161 (215)
T PRK13620         99 LSLKQVAEGKQLFAYACGQCH-VGGITKTDPNVGLDPEALALAT----PP------------RDSVESLVDYLHNPTTYD  161 (215)
T ss_pred             CCHHHHHHHHHHHHhhhhhcc-CCCCCCCCCCCCCCHHHHhccC----CC------------CCCHHHHHHHHhCccccC
Confidence            345678999999998999999 5431 1 235677777432111    00            026789999999999988


Q ss_pred             C-------------CCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           85 P-------------GTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        85 ~-------------~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +             +..||-.+.+||+|+.+|+.|+...+|
T Consensus       162 g~~siae~HPs~~s~d~mP~~r~LtdedL~aIa~~IL~qpk  202 (215)
T PRK13620        162 GEREISELHPSTKSTDIFPKMRNLTEDDLVAISGHILLQPK  202 (215)
T ss_pred             CcchhhhcCccccccccccccCCCCHHHHHHHHHHHhcccc
Confidence            7             677875566789999999999976543

>PRK13697 cytochrome c6; Provisional

Probab=99.52  E-value=6.1e-14  Score=85.55  Aligned_cols=83  Identities=22%  Similarity=0.346  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      ..++...|+.+|..+|+.||+.+. .....+|.|....               +...+ .++.+.+...++++..    .
T Consensus        24 ~a~~~~~G~~ly~~~C~~CHg~g~-~~~~~~p~l~~~~---------------~~~~~-~~~~~~l~~~i~~g~~----~   82 (111)
T PRK13697         24 LAADAANGEQVFSANCASCHAGGK-NLVNAGKTLKKAD---------------LEKYG-MYSLEAITAQVTNGKN----A   82 (111)
T ss_pred             cccCHHHHHHHHHHHHHHhCCCCC-CCCCCCCCCCHHH---------------HHhcC-CCCHHHHHHHHHcCCC----C
Confidence            346788999999989999999532 1122345544210               00001 1356778888888753    3


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |++|.+.+|++|+++|++||.++.
T Consensus        83 Mp~~~~~ls~~di~~l~~Yi~~~~  106 (111)
T PRK13697         83 MPAFKDRLSPDQIEDVAAYVLEQA  106 (111)
T ss_pred             CCCCcCCCCHHHHHHHHHHHHHHH
Confidence            446777789999999999998864

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=99.51  E-value=9.4e-14  Score=97.33  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCC-CCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQ-GPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~-gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      ..+.+|+++|...|++||+.++.+.... .|.|.+..-.+         ..         +.+.+.+.++++..   +.|
T Consensus       201 ~~~~~G~~lf~~~Ca~CHG~~G~G~~~~gaP~L~~~~~~y---------~~---------~~~~i~~~i~~G~~---g~M  259 (285)
T TIGR00782       201 ALAAKGQELFADNCTTCHGEDGKGLQELGAPNLTDDVWLY---------GG---------DLKTITTTITNGRG---GVM  259 (285)
T ss_pred             hHHHHHHHHHhccchhhCCCCCCCCCCCCCCCCCcchhhc---------CC---------CHHHHHHHHHhCCC---CCC
Confidence            4568999999989999999987654333 58887632111         00         34566677776642   334


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           89 MVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        89 m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ++|...|+++||++|++||.+|+.
T Consensus       260 p~~~~~Ls~~ei~~La~Yv~sL~~  283 (285)
T TIGR00782       260 PAWGPRLSEAQIKALAAYVHSLGG  283 (285)
T ss_pred             CCccccCCHHHHHHHHHHHHHhcC
Confidence            468888899999999999999863

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional

Probab=99.45  E-value=2.5e-13  Score=90.46  Aligned_cols=82  Identities=22%  Similarity=0.363  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHh-hCccccc--ccCC------------------------CCCCCCCCCCCccCCCCCCCCCCccchhcc
Q 033769           10 GNPKAGEKIFKT-KCAQCHT--VVKG------------------------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK   62 (112)
Q Consensus        10 ~~~~~G~~lf~~-~C~~CH~--~~~~------------------------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~   62 (112)
                      ....+|+.+|.+ .|..||+  +++-                        |....||+|+++.+|.              
T Consensus        49 ~lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~P~lwGs~RtGPDLt~vG~R~--------------  114 (217)
T PRK14487         49 ALELAGRDIYIREGCYNCHSQMIRPFRAETERYGHYSLAGESVYDHPFLWGSKRTGPDLARVGGRY--------------  114 (217)
T ss_pred             HHHHHHHHHHHhcChhhccCccccCCchhhhhcCcccccchhhcccccccCCCCCCcchhhhhccC--------------
Confidence            345789999976 5999998  4431                        1134566666655443              


Q ss_pred             ccceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHhhc
Q 033769           63 GMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRA--DLIAYLKEST  111 (112)
Q Consensus        63 ~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~--~l~ayl~sl~  111 (112)
                            +.+++..+|.+|+...|++.||-..-|.+++++  +|++||++|.
T Consensus       115 ------s~~w~~~hl~nP~~v~PgS~MPay~~L~~~~ld~~~~~~~l~~l~  159 (217)
T PRK14487        115 ------SDEWHRNHLINPRSVVPESNMPAYPWLAENDLDGTDTAEKMTALR  159 (217)
T ss_pred             ------CHHHHHHHHhCcccCCCCCCCCCCcccccccCCHHHHHHHHHHhh
Confidence                  688999999999999999999733445577766  9999999885

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=99.43  E-value=3.5e-13  Score=94.46  Aligned_cols=81  Identities=27%  Similarity=0.281  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC------C
Q 033769           12 PKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI------P   85 (112)
Q Consensus        12 ~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~   85 (112)
                      ...|+++|..+|+.||+.++.+. ...|+|.+..-.. +                 .+.+.+...++++....      .
T Consensus       107 ~~~G~~lf~~~Ca~CHG~~g~G~-~g~P~L~~~~~~~-g-----------------~~~~~i~~~i~~G~~~~~~~~~~~  167 (285)
T TIGR00782       107 RNAGAAIFRTWCAQCHGSGAGGA-KGFPNLLDNDWLW-G-----------------GTLEGIHTTIKHGIRDPDDGDTYV  167 (285)
T ss_pred             HHHHHHHHHHHhHHhCCCCCCCC-CCCCCCCCCcccc-C-----------------CCHHHHHHHHHhCccCcccCCcCC
Confidence            47899999999999999986542 3347776421100 0                 04567777777765311      1


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           86 GTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        86 ~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +.|++|...|+++||++|++||++++
T Consensus       168 ~~Mp~~~~~LsdeeI~aVaaYv~sl~  193 (285)
T TIGR00782       168 GEMPAFGPLLEEADIKDVASYVMSLS  193 (285)
T ss_pred             CCCCccccccChHHHHHHHHHHHHhc
Confidence            23446877889999999999999886

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PRK13619 psbV cytochrome c-550; Provisional

Probab=99.42  E-value=3.2e-13  Score=85.78  Aligned_cols=89  Identities=22%  Similarity=0.323  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC---
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI---   84 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---   84 (112)
                      ..+++++|+++|+.+|+.||..   |.+.++|.+.--.....+..|..            .+-+.|.+|+++|....   
T Consensus        47 s~~d~~~GkklF~~~Ca~CH~g---G~nk~~Pnl~L~~~~L~~atP~R------------dnV~aLVdymk~PtsyDG~~  111 (160)
T PRK13619         47 TSKQITNGQRLFVQECTQCHLQ---GKTKTNNNVSLGLEDLAGAEPPR------------DNVLALVDYLKHPTSYDGED  111 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHcccC---CCCCcCCCCCcCHHHHHhcCCCc------------ccHHHHHHHHhCCcccccch
Confidence            4568899999999999999985   45778887763211111111211            15678999999998762   


Q ss_pred             ------C----CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           85 ------P----GTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 ------~----~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                            |    ...||-..-|||+|+.+|++|+...+
T Consensus       112 ~~a~~hpsi~~~di~P~mr~LtdedL~~iAg~IL~~p  148 (160)
T PRK13619        112 DYSELHPNVSRPDIFPELRNFTEDDLYDVAGYMLVAP  148 (160)
T ss_pred             hhhhhcccccccccccccCCCCHHHHHHHHHHHHhcc
Confidence                  1    13344334478999999999997544

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=99.38  E-value=2.5e-12  Score=90.31  Aligned_cols=79  Identities=16%  Similarity=0.315  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      ++..+|+++|+.+|+.||+.++.+  ..+|.+.......                   ...+.+...|.++...  ..|+
T Consensus       213 ~~~~~G~~ly~~~Ca~CHg~~g~G--~~gp~p~~~~~~~-------------------~~~~~~~~~I~~G~~~--~~MP  269 (294)
T PRK14486        213 AAIAKGKALYDANCAACHGDEAQG--QEGVALNDIDDGD-------------------LPDAAYFGMIKGGSDA--KGMP  269 (294)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCC--CCCCCccccccCC-------------------CcHHHHHHHHHcCCCc--CCCC
Confidence            446899999999999999987644  3344443321100                   0234466667776542  1344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...|+++|+++|++||+++.
T Consensus       270 ~f~~~Lsdeei~~LaaYV~sl~  291 (294)
T PRK14486        270 GFGGDLSDDDIWAIVAYIRSQK  291 (294)
T ss_pred             cccccCCHHHHHHHHHHHHhcc
Confidence            6877789999999999999985

>PRK13622 psbV cytochrome c-550; Provisional

Probab=99.28  E-value=1.3e-11  Score=80.44  Aligned_cols=90  Identities=22%  Similarity=0.343  Sum_probs=53.7

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC--
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI--   84 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--   84 (112)
                      ...++...|+++|..+|+.||..   |.+.+.|...-......+..++.            .+.+.|..++++|....  
T Consensus        57 ~s~~~~~~G~~lF~~~Ca~CH~~---G~ni~~P~~tLk~~aL~~a~p~r------------dnv~AIv~yLk~p~tYdg~  121 (180)
T PRK13622         57 FTEAQLAKGKKLFNRACAQCHVG---GQTYPNPDVSLKLSDLEGATPPR------------DNVLAIVDYIKNPVTYDGV  121 (180)
T ss_pred             CCHHHHHHHHHHHHhhhHHhccC---CCCCcCCCcccCHHHHcCCCCCc------------ccHHHHHHHHhcccccCCc
Confidence            44456789999999899999954   23334443332111111111100            14567888998887433  


Q ss_pred             -------CC----CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           85 -------PG----TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 -------~~----~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                             |.    +.||-.+.|||+||++|++||....
T Consensus       122 ~~~~e~~p~~~~~~~~p~~~~LsdeEI~~VA~yIl~qa  159 (180)
T PRK13622        122 ESLLEYHPNTQLLSEYPRLRNLTDEDLKLIAGYILVQA  159 (180)
T ss_pred             cchhhccccchhccccccccCCCHHHHHHHHHHHHhCc
Confidence                   11    1233224688999999999997654

>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]

Probab=99.25  E-value=5.3e-12  Score=80.36  Aligned_cols=34  Identities=32%  Similarity=0.559  Sum_probs=24.1

Q ss_pred             CCHHHHHHHHHhhCccccccc--CCCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVV--KGAGHKQGPNLNG   43 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~--~~~~~~~gP~l~~   43 (112)
                      .....|+++|..+|+.||+.+  +.+....+|.|.+
T Consensus        49 ~~~~~G~~~f~~~C~~CHg~~~~g~~~~~~~~~l~~   84 (150)
T COG2010          49 AARGAGLALFLGNCAACHGPNLGGAGPLLDGPALAG   84 (150)
T ss_pred             HHHHHHHHHhcccchhccCCCCCCCCCcCcchhhhC
Confidence            357899999999999999987  2222233565554

>COG3258 Cytochrome c [Energy production and conversion]

Probab=99.21  E-value=4.5e-11  Score=81.54  Aligned_cols=88  Identities=22%  Similarity=0.263  Sum_probs=53.4

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCC--------CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAG--------HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~--------~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      .-+.++.+|++||..+|+.||+.+|.|.        ....|+|++--.-..+.    .+          ..-..+.+||+
T Consensus       157 ~~aadp~rG~kly~eqCa~CHg~~G~G~k~~~~~~~~y~fPpLwG~dSfn~Ga----gM----------ari~t~A~Fi~  222 (293)
T COG3258         157 LKAADPVRGKKLYAEQCAACHGADGQGLKNDDEQGAGYLFPPLWGPDSFNDGA----GM----------ARINTLARFIK  222 (293)
T ss_pred             ccCCCchhHHHHHHHHHHHhcCCCCCccccCcCCCcceecCcccCCcccCCcc----ch----------hhHHHHHHHHH
Confidence            3467999999999999999999987542        22457776521111110    00          01245667766


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           79 NPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        79 ~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .....   ..-.-..+|||+|-+||++|+.+++
T Consensus       223 ~nMP~---g~~~~~P~Lsd~dA~DiAay~~~~p  252 (293)
T COG3258         223 ANMPY---GFSGTNPILSDQDAWDIAAYVNSQP  252 (293)
T ss_pred             hcCCC---CcCccCCccChHHHHHHHHHHcCCC
Confidence            43111   0000123489999999999998764

>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V

Probab=99.16  E-value=1.4e-11  Score=76.05  Aligned_cols=87  Identities=26%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC--
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG--   86 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--   86 (112)
                      .+++++|++||+..|+.||.-   |.....|...--.....+..|..            .+-+.|++|+++|..+...  
T Consensus        22 ~~q~~~GkrLF~~~C~~CH~G---G~TktNpnV~L~le~L~~AtPpR------------DNi~~LVdYmk~PtsYDG~~~   86 (135)
T PF14495_consen   22 PEQLKRGKRLFNASCAQCHVG---GITKTNPNVSLSLEDLAGATPPR------------DNIEALVDYMKNPTSYDGEES   86 (135)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGG---GCBTTSTTSBSSHHHHHTSSS--------------SSHHHHHHHHHS-B-TTSSSB
T ss_pred             HHHHHHHHHHHHHHHHhhccC---CcccCCCCCCcCHHHHccCCCCc------------ccHHHHHHHhhCCCCcCCchh
Confidence            356799999999999999963   33344444332111111111211            1677899999999875421  


Q ss_pred             -----------CCCCCCCCCCHHHHHHHHHHHHhh
Q 033769           87 -----------TKMVFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        87 -----------~~m~~~~~l~~~ei~~l~ayl~sl  110 (112)
                                 ...|-..-|+|+|+.+|++||...
T Consensus        87 i~e~hp~~~s~di~p~mr~ltdddL~~iAg~IL~~  121 (135)
T PF14495_consen   87 ISELHPSIKSADIFPKMRNLTDDDLYAIAGYILRQ  121 (135)
T ss_dssp             GTTTS-STTCTTTSGGGTS--HHHHHHHHHHHHHH
T ss_pred             HHHhCcCcccchhhHhhcCCCHHHHHHHHHHHHhc
Confidence                       111222346899999999999643

...

>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II

Probab=99.13  E-value=1.7e-10  Score=77.62  Aligned_cols=81  Identities=25%  Similarity=0.404  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHh-hCccccc--ccCC------------------------CCCCCCCCCCCccCCCCCCCCCCccchhcc
Q 033769           10 GNPKAGEKIFKT-KCAQCHT--VVKG------------------------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK   62 (112)
Q Consensus        10 ~~~~~G~~lf~~-~C~~CH~--~~~~------------------------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~   62 (112)
                      ....+|+.+|.+ .|..||+  +++-                        |....||+|+++.+|.              
T Consensus        48 ~lel~Gr~iyi~eGC~~CHsQ~VR~~~~e~~ryG~~S~a~e~~yd~p~lwGs~RtGPDLt~vG~R~--------------  113 (232)
T TIGR00781        48 PLELAGRDIYIREGCYHCHSQMIRPFRAEVERYGHYSLAGESMYDHPFQWGSKRTGPDLARVGGRY--------------  113 (232)
T ss_pred             HHHHHHHHHHHhcChhhcccccccCcchhhhhcCcccccchhhcccccccCCCCcCcCcccccccC--------------
Confidence            345789999976 5999997  4420                        1234566666655543              


Q ss_pred             ccceeeCHHHHHHHHhCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHhh
Q 033769           63 GMAVIWEEKTLYDYLLNPKKYIPGTKMV-FPGLK-KPQDRADLIAYLKES  110 (112)
Q Consensus        63 ~~~~~~~~~~l~~~l~~~~~~~~~~~m~-~~~~l-~~~ei~~l~ayl~sl  110 (112)
                            +.+|+..+|.+|+...|++.|| |.-+. .+-+..++.+-++++
T Consensus       114 ------s~~wh~~hl~nPr~v~PgSiMP~y~~L~~~~ld~~~~~~~~~~~  157 (232)
T TIGR00781       114 ------SDEWHVKHLFDPRSVVPESIMPAYKHLATKKVDVDTAYAEAKTQ  157 (232)
T ss_pred             ------CHHHHHHHHhCccccCCCCCCCCCcccccccCCHHHHHHHHHHH
Confidence                  6789999999999999999996 43232 122333555555554

This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=99.11  E-value=2.3e-10  Score=80.54  Aligned_cols=98  Identities=15%  Similarity=0.316  Sum_probs=57.3

Q ss_pred             CCHHHHHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCC------CC----CCccchhccccceeeCHHHHHHHHh
Q 033769           10 GNPKAGEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGT------TP----GYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus        10 ~~~~~G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      ..+.+|+.+|.. .|..||+.-   ......++.. +++.+..      .+    .-...+++...|..++.+|+..+|.
T Consensus        49 ~~~~~G~~~y~~~gC~~CH~q~---vr~~~~~~~~-~g~~s~~~~~~~~~p~~~g~~r~GPDL~~vG~r~~~~w~~~~l~  124 (294)
T PRK14486         49 PLELAGRDVYQREGCVNCHTQT---VRPLKSEVVR-YGQYSKAGEFAYDHPFLWGSKRTGPDLARIGGKYPDAWHYAHFE  124 (294)
T ss_pred             HHHHHHHHHHHHcCchhhcCcc---ccCCcccccc-cCCCCcchhhhccccccccCCCCCCchhhhcccCCHHHHHHHHh
Confidence            345799999987 599999831   0000111111 1111000      00    0011334444455557899999999


Q ss_pred             CCCCCCCCCCCC-CC----CCC----------------C---------HHHHHHHHHHHHhhc
Q 033769           79 NPKKYIPGTKMV-FP----GLK----------------K---------PQDRADLIAYLKEST  111 (112)
Q Consensus        79 ~~~~~~~~~~m~-~~----~~l----------------~---------~~ei~~l~ayl~sl~  111 (112)
                      +|+...|++.|| |.    ..+                +         ..|+.+|++||..|.
T Consensus       125 ~P~~~~p~s~MP~~~~l~~~~~~~~~~~~~~~~~~~py~~~~~~~~~~~~e~~AlvAYl~~L~  187 (294)
T PRK14486        125 DPQAVVPRSNMPAYAFLKGKPLDAALTQRKMRALGFPYTDADLAALAGKTEMDAMVAYMQSLG  187 (294)
T ss_pred             CcccCCCCCCCCCCHHHhhccCcHHHHHHhhhhcCCCCCHHHHHHhcccHHHHHHHHHHHHhc
Confidence            999999999885 32    111                1         237789999999875

>COG4654 Cytochrome c551/c552 [Energy production and conversion]

Probab=98.90  E-value=1.8e-09  Score=63.88  Aligned_cols=84  Identities=18%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             CCCCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            8 PPGNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ...++++|+.+|.++ |..||.++-   ..+||++..+...+.+...               ....|...++++....-+
T Consensus        19 ga~~a~~~~aif~qkgC~~CHq~~v---ktVGPS~kdIAakYag~~~---------------~~~kl~q~i~~g~~g~wg   80 (110)
T COG4654          19 GAADAEDGKAIFSQKGCVACHQPDV---KTVGPSYKDIAAKYAGKAG---------------ALAKLAQGIKPGGVGVWG   80 (110)
T ss_pred             hccchhhhHHHHHhccchhhccccc---cccCccHHHHHHHHccchh---------------HHHHHHHhccccCcCccc
Confidence            357889999999986 999999863   6789999988766655422               344555666655544322


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHHh
Q 033769           87 -TKMVFPGLKKPQDRADLIAYLKE  109 (112)
Q Consensus        87 -~~m~~~~~l~~~ei~~l~ayl~s  109 (112)
                       -.||-+..++|.+...++.||..
T Consensus        81 ~ipMppqp~~sd~~a~~~~kwvl~  104 (110)
T COG4654          81 PIPMPPQPAISDADAKTLAKWVLA  104 (110)
T ss_pred             cCCCCCcccccchHHHHHHHHHHh
Confidence             24543434457777777777653

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=98.72  E-value=7.1e-08  Score=67.94  Aligned_cols=105  Identities=21%  Similarity=0.277  Sum_probs=52.4

Q ss_pred             CCCCCHHHHHHHHHh--hCcccccccC--C-CCCCCC-CC-CC-CccCCCC-C-CCCCCcc-chhccc---------cce
Q 033769            7 APPGNPKAGEKIFKT--KCAQCHTVVK--G-AGHKQG-PN-LN-GLFGRQS-G-TTPGYSY-SAANKG---------MAV   66 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~--~C~~CH~~~~--~-~~~~~g-P~-l~-~~~~~~~-~-~~~~~~~-~~~~~~---------~~~   66 (112)
                      ....++.+|..||..  +|+.||...-  + .-..+| |. +. +...... . ....+.| ++.++.         .|.
T Consensus       154 als~~e~~G~~LF~~k~~C~~CH~g~~ftd~~f~~iG~~~~~d~G~~~~~~~~~~~~~~~FrtPsLRnV~~taPY~HdG~  233 (291)
T TIGR03791       154 AIGADAKRGFALFKGKAGCAACHSSWRFTDDSFHDIGLKAGLDLGRGAFAPPQVTAMQHAFKTPSLRDLPMEGPFMHDGQ  233 (291)
T ss_pred             cCCHHHHHHHHHhcCCCCCCCCCCCCCcCCchHHhcCCCCccCCCcccccccccccccCcccCccccccccCCCCCCCCC
Confidence            345678999999983  5999997321  0 001122 11 10 1100000 0 0001122 233332         244


Q ss_pred             eeCHHHHHHHHhCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHhhc
Q 033769           67 IWEEKTLYDYLLNPKKYIPGTKMVF-PGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        67 ~~~~~~l~~~l~~~~~~~~~~~m~~-~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ..+.+++..+...+....++...-. .--||++|+++||+||++|+
T Consensus       234 ~~tL~evv~~y~~~g~~~~~~~~~~~~~~Lt~~E~~dLvaFL~tLt  279 (291)
T TIGR03791       234 LGSLDAVIDHYEKGGEKRPSISAEMKPFELSEREREDLIAFIETLD  279 (291)
T ss_pred             cCCHHHHHHHHHccCccccccccccccCCCCHHHHHHHHHHHHhcC
Confidence            4566667776655433222111000 11468999999999999996

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []

Probab=98.46  E-value=7.1e-07  Score=60.21  Aligned_cols=97  Identities=23%  Similarity=0.345  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCC------C----CCccchhccccceeeCHHHHHHHHh
Q 033769           10 GNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTT------P----GYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus        10 ~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      ....+|+.+|... |..||+--   ......+... +++++...      |    .-+..+++...|...+.+|...-+.
T Consensus        48 ~lel~GR~iYi~eGC~~CHSQ~---VRp~~~e~~R-yG~yS~a~e~~yd~P~lwGSkRtGPDLarvG~r~s~~Wh~~Hl~  123 (226)
T PF02433_consen   48 PLELAGRDIYIREGCYYCHSQM---VRPFRAEVER-YGRYSVAGEYVYDHPFLWGSKRTGPDLARVGGRYSDDWHLAHLY  123 (226)
T ss_pred             HHHHhHHHHHHHcCchhccccc---CCCchhhhhh-cCCCCchhhhhccCccccCCCCcCccHHHHhccCChHHHHHHhh
Confidence            4567899999875 99999832   1111111111 22221110      0    0123445555566668899999999


Q ss_pred             CCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHhh
Q 033769           79 NPKKYIPGTKMV-FPGLK-KPQDRADLIAYLKES  110 (112)
Q Consensus        79 ~~~~~~~~~~m~-~~~~l-~~~ei~~l~ayl~sl  110 (112)
                      +|+...|++.|| |.-+. .+.+...+.+.++.+
T Consensus       124 ~Pr~v~p~SiMP~Y~~L~~~~~d~~~~~~~~~~l  157 (226)
T PF02433_consen  124 NPRSVVPGSIMPSYPWLFENKLDGEDIQAKMKAL  157 (226)
T ss_pred             ChHhhCCCCCCCCChhHhhccCcHHHHHHHHHHH
Confidence            999999999996 43222 122444555555544

Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.

>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional

Probab=98.27  E-value=3e-06  Score=65.95  Aligned_cols=97  Identities=13%  Similarity=0.220  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCC----------CCccchhccccceeeCHHHHHHHHh
Q 033769           10 GNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTP----------GYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus        10 ~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      ..+.+||.+|.+. |..||+--   .....++... +++++...+          .-+..||+.+.|...++++-..-+.
T Consensus       535 ~~~~~Gr~iyi~egC~~CHsq~---vr~~~~e~~r-~G~~s~~~e~~~d~p~~~Gs~rtgpdl~~~g~~~~~~wh~~hl~  610 (712)
T PRK14485        535 PLELEGRDLYIREGCYNCHSQM---IRPFRSEVER-YGEYSKAGEFVYDHPFLWGSKRTGPDLAREGGKYPDSWHYNHME  610 (712)
T ss_pred             hHHHhhHHHHHHcCcccccccc---CCCCchhHHh-cCCCCchhhhhccCCcccCCCCcCcchhhhcCCCChHHHHHHhc
Confidence            3468999999875 99999831   1111222111 222211100          0123445555566667788999999


Q ss_pred             CCCCCCCCCCCC-C----CCCCCHHHHHHHHHHHHhh
Q 033769           79 NPKKYIPGTKMV-F----PGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        79 ~~~~~~~~~~m~-~----~~~l~~~ei~~l~ayl~sl  110 (112)
                      ||+...|++.|| |    ...++.+++.+-+..++.+
T Consensus       611 ~p~~~~p~s~mp~y~~l~~~~~~~~~~~~~~~~~~~~  647 (712)
T PRK14485        611 DPQSTSPGSIMPAYPWLLENELDISDTPAKIKAMQTL  647 (712)
T ss_pred             CchhcCCCCCCCCChhhhhCCCChHHHHHHHHHHHhc
Confidence            999999999886 3    3445556666666666654

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=98.22  E-value=6e-06  Score=57.12  Aligned_cols=44  Identities=34%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           69 EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        69 ~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      .+..+..+|++|....+++-|+-...++|++.++|++||..+.+
T Consensus       171 ~~~~~~~~i~~p~~~k~~~~m~~~~~~tdq~~~dlvaYL~~~~e  214 (250)
T COG2857         171 FEGELGIFIADPLKDKPGTYMPGNPALTDQEVKDLVAYLKWAAE  214 (250)
T ss_pred             chhhHhhhccCccccCCcCCCCCChhhHHHHHHHHHHHHHHccC
Confidence            34458899999999988887763334569999999999988753

>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein

Probab=98.03  E-value=4.9e-06  Score=49.06  Aligned_cols=83  Identities=19%  Similarity=0.316  Sum_probs=41.1

Q ss_pred             CCCCCCCHHHHHHHHHh---------hCcccccccCCCCC---CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHH
Q 033769            5 EEAPPGNPKAGEKIFKT---------KCAQCHTVVKGAGH---KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKT   72 (112)
Q Consensus         5 ~~~~~~~~~~G~~lf~~---------~C~~CH~~~~~~~~---~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (112)
                      ++....++++|+++|.+         .|++||+.+....+   ..|..+.-+..    +...-+|+          +.+.
T Consensus         4 ~~~~~~sa~rG~~~f~~~~~~~g~~~sCasCH~~~p~~~Gkh~~TgK~I~PmAp----s~Np~Rft----------D~~k   69 (98)
T PF09086_consen    4 PAFAGFSAARGEAFFTSKHTGNGKEWSCASCHTADPTQPGKHAKTGKVIEPMAP----SVNPKRFT----------DAAK   69 (98)
T ss_dssp             CCTSS--HHHHHHHHH--ECCTTCECSCHHHH-SSTTS-EE-TTTS-EE--SST----TTSTTTTS----------SHHH
T ss_pred             cccCCCCHHHHHHHHHccCCCCCCCCCcccccCCCcccccccccCCCcccCcCC----ccChhhcC----------CHHH
Confidence            45667899999999963         29999997642211   11222211111    01111122          5666


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 033769           73 LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL  107 (112)
Q Consensus        73 l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl  107 (112)
                      +.+|++..=..      -+..-=|.+|..|+++||
T Consensus        70 VEKwf~RNC~d------vlgReCTa~EKgD~l~yl   98 (98)
T PF09086_consen   70 VEKWFKRNCND------VLGRECTAQEKGDVLAYL   98 (98)
T ss_dssp             HHHHHHHHHHH------HHSS---HHHHHHHHHHH
T ss_pred             HHHHHHccchh------hhcccCCHHHhcchheeC
Confidence            77776432110      122334799999999997

It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.

>COG2993 CcoO Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]

Probab=97.92  E-value=2.7e-06  Score=56.23  Aligned_cols=81  Identities=26%  Similarity=0.380  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHh-hCcccccccC--------------------------CCCCCCCCCCCCccCCCCCCCCCCccchhccc
Q 033769           11 NPKAGEKIFKT-KCAQCHTVVK--------------------------GAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG   63 (112)
Q Consensus        11 ~~~~G~~lf~~-~C~~CH~~~~--------------------------~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~   63 (112)
                      -...|+.+|.+ .|-.||+---                          .|....||+|..+.                  
T Consensus        51 LeLaGR~IYIreGCy~CHSQmiRpfr~E~eRYGhySvA~Es~yDhPflWGSKRTGPDLaRVG------------------  112 (227)
T COG2993          51 LELAGRDIYIREGCYVCHSQMIRPFRAEVERYGHYSVAGESVYDHPFLWGSKRTGPDLARVG------------------  112 (227)
T ss_pred             HHhccceeEeecccchhhhhccccchHHHHhhccceechhhhccCchhhcCCccCcchhhhc------------------
Confidence            34689999986 5999997310                          01223344444444                  


Q ss_pred             cceeeCHHHHHHHHhCCCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHhhc
Q 033769           64 MAVIWEEKTLYDYLLNPKKYIPGTKMV-FPGLK-KPQDRADLIAYLKEST  111 (112)
Q Consensus        64 ~~~~~~~~~l~~~l~~~~~~~~~~~m~-~~~~l-~~~ei~~l~ayl~sl~  111 (112)
                        -.++.+|-..-+.+|+.++|.+.|| |.-+. +.-|++++.+=+++++
T Consensus       113 --~ryS~dWH~~Hl~~PR~vVPeSiMPsY~~L~~~~ld~~d~~~~~~~~r  160 (227)
T COG2993         113 --GRYSDDWHRAHLLDPRSVVPESIMPSYPWLFDNKLDVDDIGAELKALR  160 (227)
T ss_pred             --cccccHHHHHHccCchhcCccccCcccHHHhcCCCchHHHHHHHHhhc
Confidence              4447889999999999999999886 44332 2336677766665553

>COG3245 CycB Cytochrome c5 [Energy production and conversion]

Probab=97.75  E-value=8e-05  Score=45.48  Aligned_cols=75  Identities=15%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             HHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCCCC-
Q 033769           14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFP-   92 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~-   92 (112)
                      .|+.+|...|..||...-    ...|.......|-..-..               -.+.|.+--.++...    |+|-. 
T Consensus        49 ~Gk~vy~~tC~~CHa~~~----~GAPk~GdkAaW~PRiaq---------------G~dtL~~hai~GfnA----MPpkG~  105 (126)
T COG3245          49 EGKKVYGATCQACHAAGL----PGAPKTGDKAAWAPRIAQ---------------GKDTLLDHAINGFNA----MPPKGG  105 (126)
T ss_pred             ccchhHhhhhhHhccCCC----CCCCCCCchhhhhhHHHh---------------chHHHHHHHhccccC----CCCCCC
Confidence            399999999999997532    223332221111100000               123344444454432    22322 


Q ss_pred             -CCCCHHHHHHHHHHHHhhc
Q 033769           93 -GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        93 -~~l~~~ei~~l~ayl~sl~  111 (112)
                       .-.||+|+++.|.|+...+
T Consensus       106 ca~cSdDe~kAaId~M~~~~  125 (126)
T COG3245         106 CADCSDDEVKAAIDFMAAAS  125 (126)
T ss_pred             cCCCCHHHHHHHHHHHHhcc
Confidence             1247999999999997654

>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1

Probab=97.72  E-value=1.7e-05  Score=51.07  Aligned_cols=18  Identities=39%  Similarity=0.850  Sum_probs=14.6

Q ss_pred             HHHHHHHhhCcccccccC
Q 033769           14 AGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~   31 (112)
                      .|++|.+.+|+.||+.+.
T Consensus         2 ~G~~Lv~~kC~~CHs~~~   19 (167)
T PF09098_consen    2 DGEQLVQEKCAGCHSADY   19 (167)
T ss_dssp             -HHHHHHHCHCCTC-EEC
T ss_pred             cHHHHHHHHHHHhcCccc
Confidence            699999999999999864

4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.

>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes

Probab=97.42  E-value=4.4e-05  Score=51.81  Aligned_cols=23  Identities=22%  Similarity=0.652  Sum_probs=19.4

Q ss_pred             CCCCHHHHHHHHHhhCccccccc
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      ..+++.+|.++|.++|++||++.
T Consensus        11 D~aslqRG~qvy~~~C~~CHsl~   33 (219)
T PF02167_consen   11 DKASLQRGAQVYMEVCASCHSLK   33 (219)
T ss_dssp             -HHHHHHHHHHHHHTGGGTSBCT
T ss_pred             cHHHHHHHHHHHHHHHhhccccc
Confidence            34567999999999999999975

It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....

>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=97.39  E-value=7.3e-05  Score=56.04  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=19.5

Q ss_pred             CCCCCHHHHHHHHHh-hCccccccc
Q 033769            7 APPGNPKAGEKIFKT-KCAQCHTVV   30 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~-~C~~CH~~~   30 (112)
                      .....+.+|++||.+ .|+.||...
T Consensus       358 ~~~~~v~~G~~lF~~~GCa~CH~p~  382 (499)
T PF06537_consen  358 LDDPQVLRGKQLFYQIGCASCHTPS  382 (499)
T ss_pred             CCcHHHHHHHHHHHhcCCcccCCCc
Confidence            345677999999998 499999864

>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms

Probab=96.93  E-value=0.00034  Score=46.79  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=16.3

Q ss_pred             CCCHHHHHHHHHhhCccccccc
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      ..+...-+.+|+.+|..||+.+
T Consensus       166 gfdf~AAk~L~~~KCNkCHTl~  187 (233)
T PF10643_consen  166 GFDFAAAKALFDRKCNKCHTLK  187 (233)
T ss_dssp             T--HHHHHHHHHHHTTSSS-SH
T ss_pred             hhhHHHHHHHHHhhccccccHH
Confidence            4566778899999999999975

The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.

>PF14376 Haem_bd: Haem-binding domain

Probab=96.88  E-value=0.00099  Score=42.15  Aligned_cols=41  Identities=12%  Similarity=0.233  Sum_probs=26.0

Q ss_pred             HHHHHHHHhCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhh
Q 033769           70 EKTLYDYLLNPKKYIPG-TKMVFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        70 ~~~l~~~l~~~~~~~~~-~~m~~~~~l~~~ei~~l~ayl~sl  110 (112)
                      .+.+...|+++..-.+. .+|=....||++|++.|++|++..
T Consensus        95 l~~i~~~I~~g~MP~~~Y~~~H~~a~Ls~~ek~~Ll~Wi~~~  136 (137)
T PF14376_consen   95 LAKIEEVIEDGEMPPPSYTLLHWEAKLSEEEKQALLNWIKEQ  136 (137)
T ss_pred             HHHHHHHHHcCCCChHHHhhhCCCCCCCHHHHHHHHHHHHHc
Confidence            34566666665432221 122245668999999999999864

>COG3748 Predicted membrane protein [Function unknown]

Probab=96.82  E-value=0.0031  Score=45.13  Aligned_cols=74  Identities=14%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHH-----HhCCCCCCC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDY-----LLNPKKYIP   85 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~~~~   85 (112)
                      +...-+.+.+..|..||.....-.....|+..-..                      .+++++...     ++.++    
T Consensus       323 ~F~kv~~~v~~rCs~CHaa~P~~e~~~~~p~gv~l----------------------dt~~~iaa~A~~Iy~qA~~----  376 (407)
T COG3748         323 HFAKVRDVVQGRCSMCHAAEPTWEGISAPPKGVML----------------------DTDEQIAAHAREIYLQAGR----  376 (407)
T ss_pred             chHHHHHHHHhhhhhhhcCCCcccccccCCCceee----------------------cCHHHHHHHHHHHHHHHHH----
Confidence            34455667777899999865322122233321110                      134444432     22222    


Q ss_pred             CCCCCCC--CCCCHHHHHHHHHHHHhh
Q 033769           86 GTKMVFP--GLKKPQDRADLIAYLKES  110 (112)
Q Consensus        86 ~~~m~~~--~~l~~~ei~~l~ayl~sl  110 (112)
                      +..||..  ..+||+|++-|.+|+.+-
T Consensus       377 s~~MP~gNvt~mT~eER~ll~aW~e~~  403 (407)
T COG3748         377 SHAMPPGNVTQMTDEERALLAAWFESG  403 (407)
T ss_pred             hccCCCcccccCCHHHHHHHHHHHHhc
Confidence            2345533  335799999999999763

>KOG3052 consensus Cytochrome c1 [Energy production and conversion]

Probab=96.60  E-value=0.00059  Score=47.06  Aligned_cols=27  Identities=22%  Similarity=0.565  Sum_probs=21.7

Q ss_pred             CCCCCCCCHHHHHHHHHhhCccccccc
Q 033769            4 FEEAPPGNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus         4 ~~~~~~~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      +.+...+.+.+|.++|++.|++||+.+
T Consensus        87 lss~DhaSiRRGyqVYkqVCaaCHSm~  113 (311)
T KOG3052|consen   87 LSSFDHASIRRGYQVYKQVCAACHSMD  113 (311)
T ss_pred             cccccHHHHhhhHHHHHHHHHHhhhhH
Confidence            344555678999999999999999964

>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family

Probab=96.52  E-value=0.014  Score=41.83  Aligned_cols=20  Identities=20%  Similarity=0.521  Sum_probs=16.1

Q ss_pred             HHHHHHHHHhhCcccccccC
Q 033769           12 PKAGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus        12 ~~~G~~lf~~~C~~CH~~~~   31 (112)
                      ..+-+-++..+|+.||+.++
T Consensus       213 e~rarpyL~~NC~~CH~p~g  232 (317)
T TIGR03806       213 AQRARAYLDVNCAHCHNPGG  232 (317)
T ss_pred             HHHHHHHHHhHHHhcCCCCc
Confidence            46677788889999999764

The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.

>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]

Probab=95.94  E-value=0.02  Score=41.72  Aligned_cols=24  Identities=38%  Similarity=0.708  Sum_probs=19.2

Q ss_pred             CCCCCHHHHHHHHH-h-hCccccccc
Q 033769            7 APPGNPKAGEKIFK-T-KCAQCHTVV   30 (112)
Q Consensus         7 ~~~~~~~~G~~lf~-~-~C~~CH~~~   30 (112)
                      .......+|.+||. + +|++||...
T Consensus       215 aLT~~e~rGl~LF~~k~~C~aCH~g~  240 (364)
T COG1858         215 ALTEQEKRGLALFKGKANCAACHNGI  240 (364)
T ss_pred             hcCHHHHHHHHHHccCCCchhhccCc
Confidence            44567799999999 5 599999754

>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC

Probab=95.79  E-value=0.014  Score=42.99  Aligned_cols=18  Identities=17%  Similarity=0.591  Sum_probs=15.9

Q ss_pred             HHHHHHHHhhCccccccc
Q 033769           13 KAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus        13 ~~G~~lf~~~C~~CH~~~   30 (112)
                      ..|+.+|..+|+.||...
T Consensus       322 ~~a~~ly~~~Cs~CH~~~  339 (386)
T TIGR02162       322 AYAKSMYNGACSMCHVQP  339 (386)
T ss_pred             HHHHHHHhcchhhhcCCC
Confidence            679999999999999863

This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.

>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]

Probab=95.46  E-value=0.045  Score=39.61  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=18.6

Q ss_pred             CCCCCHHHHHHHHHh-hCcccccc
Q 033769            7 APPGNPKAGEKIFKT-KCAQCHTV   29 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~-~C~~CH~~   29 (112)
                      ....++..|++||.+ .|.+||..
T Consensus       346 ~~dp~vl~GkkLF~~agC~aCH~p  369 (481)
T COG3488         346 VQDPQVLAGKKLFAQAGCVACHTP  369 (481)
T ss_pred             cCChhhhhhhHHHHhcCchhccCC
Confidence            344567899999987 59999985

>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional

Probab=95.16  E-value=0.034  Score=41.03  Aligned_cols=18  Identities=22%  Similarity=0.685  Sum_probs=15.8

Q ss_pred             HHHHHHHHhhCccccccc
Q 033769           13 KAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus        13 ~~G~~lf~~~C~~CH~~~   30 (112)
                      ..|+.+|+.+|+.||+.-
T Consensus       319 ~ya~~ly~~~Cs~CHa~~  336 (390)
T PRK15032        319 AYADSLYNGTCNQCHGAP  336 (390)
T ss_pred             HHHHHHHhccchhhcCCC
Confidence            678999999999999863

>COG3258 Cytochrome c [Energy production and conversion]

Probab=94.89  E-value=0.14  Score=35.87  Aligned_cols=16  Identities=19%  Similarity=0.345  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHhhc
Q 033769           96 KPQDRADLIAYLKEST  111 (112)
Q Consensus        96 ~~~ei~~l~ayl~sl~  111 (112)
                      +..|++++++|++=|+
T Consensus       121 DspEmkAmlaY~kWL~  136 (293)
T COG3258         121 DSPEMKAMLAYMKWLK  136 (293)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            5779999999997664

>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region

Probab=94.42  E-value=0.079  Score=32.81  Aligned_cols=12  Identities=33%  Similarity=1.041  Sum_probs=7.2

Q ss_pred             HHhhCccccccc
Q 033769           19 FKTKCAQCHTVV   30 (112)
Q Consensus        19 f~~~C~~CH~~~   30 (112)
                      |.+.|++||-..
T Consensus         1 Y~~eCgsCH~ay   12 (120)
T PF09626_consen    1 YKEECGSCHMAY   12 (120)
T ss_dssp             -HHHTTSSS---
T ss_pred             CccchhhccCcC
Confidence            567899999754

Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.

>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups

Probab=93.50  E-value=0.032  Score=36.17  Aligned_cols=20  Identities=35%  Similarity=0.750  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHh---------hCccccccc
Q 033769           11 NPKAGEKIFKT---------KCAQCHTVV   30 (112)
Q Consensus        11 ~~~~G~~lf~~---------~C~~CH~~~   30 (112)
                      .++-|+.||..         .|++||..+
T Consensus         4 ~~~LGk~LF~D~~LS~~~~~SCasCH~~~   32 (159)
T PF03150_consen    4 KAALGKKLFFDPRLSGDGTVSCASCHDPE   32 (159)
T ss_dssp             HHHHHHHHHT-GGGSTTSS--HHHHS-TT
T ss_pred             HHHHHHHHhCCCccCCCcCcCchhhCCCc
Confidence            46789999943         499999876

Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=91.02  E-value=0.09  Score=37.36  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=16.9

Q ss_pred             CCHHHHHHHHH---------hhCcccccccC
Q 033769           10 GNPKAGEKIFK---------TKCAQCHTVVK   31 (112)
Q Consensus        10 ~~~~~G~~lf~---------~~C~~CH~~~~   31 (112)
                      +.++-|+.||-         ..|++||....
T Consensus         4 ~k~~LGk~LFfD~~LS~~~~~SCasCH~p~~   34 (291)
T TIGR03791         4 EKAALGKALFFDPRLSRDGSMSCATCHNPGL   34 (291)
T ss_pred             HHHHHHHHHhcCcccCCCCCcCchhcCCccc
Confidence            45788999993         14999999764

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c

Probab=88.47  E-value=0.27  Score=26.41  Aligned_cols=9  Identities=44%  Similarity=0.899  Sum_probs=7.5

Q ss_pred             CcccccccC
Q 033769           23 CAQCHTVVK   31 (112)
Q Consensus        23 C~~CH~~~~   31 (112)
                      |..||+.+.
T Consensus         1 C~~CHg~~~    9 (59)
T PF07635_consen    1 CFSCHGPDK    9 (59)
T ss_pred             CcCCCCCCC
Confidence            999999764

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=86.97  E-value=0.1  Score=36.27  Aligned_cols=24  Identities=25%  Similarity=0.711  Sum_probs=19.7

Q ss_pred             CCCCHHHHHHHHHhhCcccccccC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~   31 (112)
                      ..+...+|.++|..+|..||+...
T Consensus        39 d~~~lq~g~~~~~~~c~~chs~~~   62 (250)
T COG2857          39 DKGSLQRGAQLYKEYCSACHSLKL   62 (250)
T ss_pred             hhHHhhhceeeeecCChhhccccc
Confidence            345678999999999999999753

>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]

Probab=84.91  E-value=0.51  Score=34.61  Aligned_cols=24  Identities=38%  Similarity=0.948  Sum_probs=18.1

Q ss_pred             CCCHHHHHHHHHh---------hCcccccccCC
Q 033769            9 PGNPKAGEKIFKT---------KCAQCHTVVKG   32 (112)
Q Consensus         9 ~~~~~~G~~lf~~---------~C~~CH~~~~~   32 (112)
                      +..++-|+.||-.         .|++||.....
T Consensus        59 ~~~~aLGk~LffDprLS~sg~~SC~sCH~~~~g   91 (364)
T COG1858          59 PAKAALGKKLFFDPRLSASGTISCATCHNLARG   91 (364)
T ss_pred             hHHHHHHHHhhcCcccCCCCCcCchhhcCcccc
Confidence            3557899999932         49999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
1ccr_A	112	Structure Of Rice Ferricytochrome C At 2.0 Angstrom		1e-55
1j3s_A	104	Solution Structure Of Reduced Recombinant Human Cyt		3e-36
3nwv_A	104	Human Cytochrome C G41s Length = 104		1e-35
2aiu_A	105	Crystal Structure Of Mouse Testicular Cytochrome C		1e-35
1crc_A	105	Cytochrome C At Low Ionic Strength Length = 105		2e-34
2pcb_B	104	Crystal Structure Of A Complex Between Electron Tra		2e-34
2b4z_A	104	Crystal Structure Of Cytochrome C From Bovine Heart		4e-34
1giw_A	104	Solution Structure Of Reduced Horse Heart Cytochrom		6e-34
1nmi_A	108	Solution Structure Of The Imidazole Complex Of Iso-		1e-32
1s6v_B	108	Structure Of A Cytochrome C Peroxidase-Cytochrome C		1e-32
2jqr_A	108	Solution Model Of Crosslinked Complex Of Cytochrome		2e-32
1u74_B	108	Electron Transfer Complex Between Cytochrome C And		3e-32
1cyc_A	103	The Crystal Structure Of Bonito (Katsuo) Ferrocytoc		3e-32
2ycc_A	108	Oxidation State-Dependent Conformational Changes In		4e-32
2pcc_B	108	Crystal Structure Of A Complex Between Electron Tra		5e-32
1csw_A	108	Replacements In A Conserved Leucine Cluster In The		7e-32
1cty_A	108	Mutation Of Tyrosine-67 In Cytochrome C Significant		1e-31
1irv_A	108	Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75		1e-31
1yic_A	108	The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochr		1e-31
1csv_A	108	Replacements In A Conserved Leucine Cluster In The		1e-31
1yfc_A	108	Solution Nmr Structure Of A Yeast Iso-1-Ferrocytoch		1e-31
3cyt_O	104	Redox Conformation Changes In Refined Tuna Cytochro		1e-31
1i54_A	103	Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins		1e-31
1chh_A	108	Structural Studies Of The Roles Of Residues 82 And		1e-31
2b12_B	108	Crystal Structure Of The Protein-Protein Complex Be		1e-31
2jti_B	108	Solution Structure Of The Yeast Iso-1-Cytochrome C		2e-31
1fhb_A	108	Three-Dimensional Solution Structure Of The Cyanide		2e-31
1kyo_W	108	Yeast Cytochrome Bc1 Complex With Bound Substrate C		2e-31
2b11_B	108	Crystal Structure Of The Protein-Protein Complex Be		2e-31
1lms_A	108	Structural Model For An Alkaline Form Of Ferricytoc		2e-31
1csu_A	108	Replacements In A Conserved Leucine Cluster In The		2e-31
1chj_A	108	Structural Studies Of The Roles Of Residues 82 And		2e-31
1csx_A	108	Replacements In A Conserved Leucine Cluster In The		2e-31
2b0z_B	108	Crystal Structure Of The Protein-Protein Complex Be		3e-31
2lir_A	108	Nmr Solution Structure Of Yeast Iso-1-Cytochrome C		3e-31
1irw_A	108	Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52		4e-31
2b10_B	108	Crystal Structure Of The Protein-Protein Complex Be		5e-31
1crg_A	108	The Role Of A Conserved Internal Water Molecule And		5e-31
1chi_A	108	Structural Studies Of The Roles Of Residues 82 And		6e-31
1raq_A	108	The Structure And Function Of Omega Loop A Replacem		7e-31
1cri_A	108	The Role Of A Conserved Internal Water Molecule And		1e-30
1crh_A	108	The Role Of A Conserved Internal Water Molecule And		2e-30
1rap_A	108	The Structure And Function Of Omega Loop A Replacem		3e-30
3cxh_W	112	Structure Of Yeast Complex Iii With Isoform-2 Cytoc		6e-30
1yeb_A	108	Structure Determination And Analysis Of Yeast Iso-2		6e-30
1cif_A	108	Structural And Functional Effects Of Multiple Mutat		1e-29
1cig_A	108	Structural And Functional Effects Of Multiple Mutat		1e-29
1cie_A	108	Structural And Functional Effects Of Multiple Mutat		2e-29
1ytc_A	112	Thermodynamic Cycles As Probes Of Structure-Functio		7e-29
1cih_A	108	Structural And Functional Effects Of Multiple Mutat		1e-28
2yk3_A	114	Crithidia Fasciculata Cytochrome C Length = 114		2e-28
4dy9_A	113	Leishmania Major Peroxidase Is A Cytochrome C Perox		8e-28
1hro_A	106	Molecular Structure Of A High Potential Cytochrome		6e-26
1co6_A	107	Crystal Structure Of Ferrocytochrome C2 From Rhodop		6e-25
3m97_X	140	Structure Of The Soluble Domain Of Cytochrome C552		4e-17
1ql3_A	99	Structure Of The Soluble Domain Of Cytochrome C552		7e-17
1c7m_A	100	Solution Structure Of The Functional Domain Of Para		7e-17
1qn2_A	100	Cytochrome Ch From Methylobacterium Extorquens Leng		5e-16
1jdl_A	121	Structure Of Cytochrome C2 From Rhodospirillum Cent		3e-13
2c2c_A	112	Refinement Of The Crystal Structure Of Oxidized Rho		6e-11
1hh7_A	114	Refined Crystal Structure Of Cytochrome C2 From Rho		2e-09
2cxb_A	124	Crystallization And X-Ray Structure Determination O		6e-09
2bgv_X	134	X-Ray Structure Of Ferric Cytochrome C-550 From Par		9e-09
1cot_A	129	X-Ray Structure Of The Cytochrome C2 Isolated From		4e-08
2bh4_X	134	X-Ray Structure Of The M100k Variant Of Ferric Cyt		7e-08
155c_A	135	The Structure Of Paracoccus Denitrificans Cytochrom		8e-08
1vyd_A	116	Crystal Structure Of Cytochrome C2 Mutant G95e Leng		3e-06
1c2r_A	116	Molecular Structure Of Cytochrome C2 Isolated From		6e-06
1c2n_A	137	Cytochrome C2, Nmr, 20 Structures Length = 137		2e-05

>pdb|1CCR|A Chain A, Structure Of Rice Ferricytochrome C At 2.0 Angstroms Resolution Length = 112

Iteration: 1
 Score =  210 bits (535), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 104/111 (93%)
Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A+
Sbjct: 2   ASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTAD 61
Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K MAVIWEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLI+YLKE+T+
Sbjct: 62  KNMAVIWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLISYLKEATS 112

>pdb|1J3S|A Chain A, Solution Structure Of Reduced Recombinant Human Cytochrome C Length = 104

Iteration: 1
 Score =  146 bits (368), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 83/102 (81%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++G  PGYSY+AANK   +IW 
Sbjct: 1   GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 60
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct: 61  EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102

>pdb|3NWV|A Chain A, Human Cytochrome C G41s Length = 104

Iteration: 1
 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 82/102 (80%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+ + G+KIF  KC+QCHTV KG  HK GPNL+GLFGR++   PGYSY+AANK   +IW 
Sbjct: 1   GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTSQAPGYSYTAANKNKGIIWG 60
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct: 61  EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102

>pdb|2AIU|A Chain A, Crystal Structure Of Mouse Testicular Cytochrome C At 1.6 Angstrom Length = 105

Iteration: 1
 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 81/103 (78%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+ +AG+KIF  KCAQCHTV KG  HK GPNL GLFGR++G  PG+SY+ ANK   VIW 
Sbjct: 2   GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWS 61
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLK++T+
Sbjct: 62  EETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104

>pdb|1CRC|A Chain A, Cytochrome C At Low Ionic Strength Length = 105

Iteration: 1
 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 81/102 (79%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG++Y+ ANK   + W+
Sbjct: 2   GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWK 61
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct: 62  EETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103

>pdb|2PCB|B Chain B, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 104

Iteration: 1
 Score =  140 bits (352), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 81/102 (79%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG++Y+ ANK   + W+
Sbjct: 1   GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWK 60
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct: 61  EETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102

>pdb|2B4Z|A Chain A, Crystal Structure Of Cytochrome C From Bovine Heart At 1.5 A Resolution. Length = 104

Iteration: 1
 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 80/102 (78%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+ + G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG+SY+ ANK   + W 
Sbjct: 1   GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWG 60
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct: 61  EETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 102

>pdb|1GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C, Nmr, Minimized Average Structure Length = 104

Iteration: 1
 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 78/97 (80%)
Query: 15  GEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLY 74
           G+KIF  KCAQCHTV KG  HK GPNL+GLFGR++G  PG++Y+ ANK   + W+E+TL 
Sbjct: 6   GKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLM 65
Query: 75  DYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct: 66  EYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102

>pdb|1NMI|A Chain A, Solution Structure Of The Imidazole Complex Of Iso-1 Cytochrome C Length = 108

Iteration: 1
 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1S6V|B Chain B, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 108

Iteration: 1
 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMCFGGLKKEKDRNDLITYLKKAT 107

>pdb|2JQR|A Chain A, Solution Model Of Crosslinked Complex Of Cytochrome C And Adrenodoxin Length = 108

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 76/106 (71%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKCGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1U74|B Chain B, Electron Transfer Complex Between Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 76/106 (71%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107

>pdb|1CYC|A Chain A, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C At 2.3 Angstroms Resolution. Ii. Structure And Function Length = 103

Iteration: 1
 Score =  133 bits (334), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 75/103 (72%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+   G+K F  KCAQCHTV  G  HK GPNL GLFGR++G   GYSY+ ANK   ++W 
Sbjct: 1   GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           E TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct: 61  ENTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103

>pdb|2YCC|A Chain A, Oxidation State-Dependent Conformational Changes In Cytochrome C Length = 108

Iteration: 1
 Score =  132 bits (332), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|2PCC|B Chain B, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 108

Iteration: 1
 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 75/105 (71%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1CSW|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F G+KK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGMKKEKDRNDLITYLKKAT 107

>pdb|1CTY|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly Alters The Local Heme Environment Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + ++L NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1IRV|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75 Replaced By Met And Cys 102 Replaced By Thr Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KY+PGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYMPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1YIC|A Chain A, The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C, Nmr, 20 Structures Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107

>pdb|1CSV|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGFKKEKDRNDLITYLKKAT 107

>pdb|1YFC|A Chain A, Solution Nmr Structure Of A Yeast Iso-1-Ferrocytochrome C Length = 108

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK+++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAS 107

>pdb|3CYT|O Chain O, Redox Conformation Changes In Refined Tuna Cytochrome C Length = 104

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 74/103 (71%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+   G+K F  KCAQCHTV  G  HK GPNL GLFGR++G   GYSY+ ANK   ++W 
Sbjct: 2   GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 61
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct: 62  NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 104

>pdb|1I54|A Chain A, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins Length = 103

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 74/103 (71%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+   G+K F  KCAQCHTV  G  HK GPNL GLFGR++G   GYSY+ ANK   ++W 
Sbjct: 1   GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60
Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct: 61  NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103

>pdb|1CHH|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM + GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAYGGLKKEKDRNDLITYLKKAT 107

>pdb|2B12|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82y Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 75/105 (71%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NPKKYIPGTKM + GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAYGGLKKEKDRNDLITYLKKA 106

>pdb|2JTI|B Chain B, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a) : Yeast Cytochrome C Peroxidase Complex Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FK +C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKARCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide Adduct Of A Met80ala Variant Of Saccharomyces Cerevisiae Iso-1- Cytochrome C. Identification Of Ligand-Residue Interactions In The Distal Heme Cavity Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGRQSG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTK  F GLKK +DR DLI YLK+++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKAAFGGLKKEKDRNDLITYLKKAS 107

>pdb|1KYO|W Chain W, Yeast Cytochrome Bc1 Complex With Bound Substrate Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|2B11|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82w Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 75/105 (71%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NPKKYIPGTKM + GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAWGGLKKEKDRNDLITYLKKA 106

>pdb|1LMS|A Chain A, Structural Model For An Alkaline Form Of Ferricytochrome C Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGT M F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPAKYIPGTAMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1CSU|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGCKKEKDRNDLITYLKKAT 107

>pdb|1CHJ|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F G KK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGAKKEKDRNDLITYLKKAT 107

>pdb|1CSX|A Chain A, Replacements In A Conserved Leucine Cluster In The Hydrophobic Heme Pocket Of Cytochrome C Length = 108

Iteration: 1
 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR D I YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDSITYLKKAT 107

>pdb|2B0Z|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82i Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NPKKYIPGTKM   GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAIGGLKKEKDRNDLITYLKKA 106

>pdb|2LIR|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant P71h In Oxidized States Length = 108

Iteration: 1
 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL N  KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNHAKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1IRW|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52 Replaced By Ala And Cys 102 Replaced By Thr Length = 108

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ A     
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAAIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|2B10|B Chain B, Crystal Structure Of The Protein-Protein Complex Between F82s Cytochrome C And Cytochrome C Peroxidase Length = 108

Iteration: 1
 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 74/105 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NPKKYIPGTKM   GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMASGGLKKEKDRNDLITYLKKA 106

>pdb|1CRG|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ A     
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1CHI|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At The Interactive Face Of Cytochrome C Length = 108

Iteration: 1
 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM + G KK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAYGGAKKEKDRNDLITYLKKAT 107

>pdb|1RAQ|A Chain A, The Structure And Function Of Omega Loop A Replacements In Cytochrome C Length = 108

Iteration: 1
 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 74/105 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV +G  +K GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1CRI|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 74/106 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ A     
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + ++L NP KYIPGTKM F GLKK +DR DLI YLK++T
Sbjct: 62  VLWDENNMSEFLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAT 107

>pdb|1CRH|A Chain A, The Role Of A Conserved Internal Water Molecule And Its Associated Hydrogen Bond Network In Cytochrome C Length = 108

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 73/105 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ A     
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1RAP|A Chain A, The Structure And Function Of Omega Loop A Replacements In Cytochrome C Length = 108

Iteration: 1
 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 73/105 (69%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHT  +G  +K GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTFDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|3CXH|W Chain W, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C Bound And Definition Of A Minimal Core Interface For Electron Transfer. Length = 112

Iteration: 1
 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 71/99 (71%)
Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
           PG+ K G  +FKT+C QCHT+ +G  +K GPNL+G+FGR SG   GYSY+ AN    V W
Sbjct: 9   PGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKW 68
Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
           +E ++ +YL NP KYIPGTKM F GLKK +DR DLI Y+
Sbjct: 69  DEDSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYM 107

>pdb|1YEB|A Chain A, Structure Determination And Analysis Of Yeast Iso-2- Cytochrome C And A Composite Mutant Protein Length = 108

Iteration: 1
 Score =  125 bits (314), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 74/105 (70%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHT+ +G  +K GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V W+E ++ +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VKWDEDSMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 72/105 (68%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FG  SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM   GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106

>pdb|1CIG|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 72/105 (68%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FG  SG   GYSY+ A     
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106

>pdb|1CIE|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 72/105 (68%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ A     
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM   GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106

>pdb|1YTC|A Chain A, Thermodynamic Cycles As Probes Of Structure-Function Relationships In Unfolded Proteins Length = 112

Iteration: 1
 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 70/99 (70%)
Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
           PG+ K G  +FKT+C QCHT+ +G  +K GPNL+G+FGR SG   GYSY+ A     V W
Sbjct: 9   PGSAKKGATLFKTRCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDAIINKNVKW 68
Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
           +E ++ +YL NP KYIPGTKM F GLKK +DR DLI Y+
Sbjct: 69  DEDSMSEYLTNPXKYIPGTKMAFAGLKKEKDRNDLITYM 107

>pdb|1CIH|A Chain A, Structural And Functional Effects Of Multiple Mutations At Distal Sites In Cytochrome C Length = 108

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 71/105 (67%)
Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FG  SG   GYSY+ A     
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKN 61
Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           V+W+E  + +YL NP KYIPGTKM   GLKK +DR DLI YLK++
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMASGGLKKEKDRNDLITYLKKA 106

>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C Length = 114

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 70/101 (69%)
Query: 8   PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
           PPG+   GEK+FK + AQCHT  +G  +  GPNL GL GR SGT  GY+YS AN    V+
Sbjct: 10  PPGDAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVV 69
Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           W    L  YL NP K++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct: 70  WTPDVLDVYLENPXKFMPGTKMSFAGMKKPQERADVIAYLE 110

>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase Length = 113

Iteration: 1
 Score =  118 bits (295), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 71/101 (70%)
Query: 8   PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
           PPG+ + GEK+FK + AQCHT  KG  +  GPNL G+  R SG   G++YS AN    VI
Sbjct: 10  PPGDVERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSKANAESGVI 69
Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           W  + L  YL NPKK++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct: 70  WTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLE 110

>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2 Isolated From Rhodopila Globiformis Length = 106

Iteration: 1
 Score =  112 bits (280), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 7   APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAV 66
           APPG+P  G+ +F T C  CHT +KGA +K GP+L G+ GR SG  PGY+YS AN    +
Sbjct: 3   APPGDPVEGKHLFHTICITCHTDIKGA-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGI 61
Query: 67  IWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           +W    L+ Y+ +P+K +PGTKM +PG   PQ RAD+IAYL+
Sbjct: 62  VWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 103

>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From Rhodopseudomonas Viridis Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Query: 14  AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTL 73
           +GE++FK +C  CH++  GA +K GP LNGLFGR SGT  G++YS ANK   + W E+  
Sbjct: 5   SGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVF 63
Query: 74  YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
            +Y+ +PK  IPGTKM+F G+K  Q  +DLIAY+K+  A
Sbjct: 64  REYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102

>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With Its Flexible Linker Segment From Paracoccus Denitrificans Length = 140

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
           +P AGEK+F  KC  CH +    G   GP+LNG+ GR      G++YS   K     W  
Sbjct: 43  DPAAGEKVFG-KCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 99
Query: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           + L ++L NPK  + GTKM F GL K +DRA+LIAYL+
Sbjct: 100 EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 137

>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From Paracoccus Denitrificans In The Reduced State Length = 99

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
           +P AGEK+F  KC  CH +    G   GP+LNG+ GR      G++YS   K     W  
Sbjct: 2   DPAAGEKVF-GKCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 58
Query: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           + L ++L NPK  + GTKM F GL K +DRA+LIAYL+
Sbjct: 59  EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 96

>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of Paracoccus Denitrificans Cytochrome C552 In The Reduced State Length = 100

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
           +P AGEK+F  KC  CH +    G   GP+LNG+ GR      G++YS   K     W  
Sbjct: 3   DPAAGEKVF-GKCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 59
Query: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           + L ++L NPK  + GTKM F GL K +DRA+LIAYL+
Sbjct: 60  EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 97

>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens Length = 100

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKGMAVIW 68
           G+  AGEK F   C  CH   K   +  GP L G+ G ++G    GY++S A K   + W
Sbjct: 2   GDAAAGEKAF-APCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTW 57
Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           ++  L  +L +PKK +PGTKMVFPG+  P+   D+IAYLK
Sbjct: 58  DQADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLK 97

>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum Length = 121

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 19/117 (16%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG---MAV 66
           G+P  GE +FK KC  CH V   A +  GP L G+  RQ+GT PG++YSA N       +
Sbjct: 3   GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGL 61
Query: 67  IWEEKTLYDYLLNPKKYIP--------------GTKMVFPGLKKPQDRADLIAYLKE 109
            W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLK+
Sbjct: 62  HWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQ 117

>pdb|2C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized Rhodospirillum Rubrum Cytochrome C2 Length = 112

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 13/110 (11%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA---NKGMAV 66
           G+  AGEK+ K KC  CHT  +G  +K GPNL G+F   +     Y+YS +    K   +
Sbjct: 2   GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGL 60
Query: 67  IWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
            W E  L  Y+ NPK ++          +KM F  L K  +  ++IAYLK
Sbjct: 61  TWTEANLAAYVKNPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLK 109

>pdb|1HH7|A Chain A, Refined Crystal Structure Of Cytochrome C2 From Rhodopseudomonas Palustris At 1.4 Angstrom Resolution Length = 114

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 22/114 (19%)
Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG---MAVI 67
           + KAGE +FK +C  CH   K   +  GP L G+ GR++GT  G++YS  N       ++
Sbjct: 2   DAKAGEAVFK-QCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLV 57
Query: 68  WEEKTLYDYLLNPKKYIPG--------------TKMVFPGLKKPQDRADLIAYL 107
           W    +  YL +P  ++                TKM F  L   Q R D++AYL
Sbjct: 58  WTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYL 110

>pdb|2CXB|A Chain A, Crystallization And X-Ray Structure Determination Of Cytochrome C2 From Rhodobacter Sphaeroides In Three Crystal Forms Length = 124

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 25/121 (20%)
Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAG-------HKQGPNLNGLFGRQSGTTPGYS------ 56
           G+P+AG K F  +C  CH +V  +G        K GPNL G+ GR +GT   +       
Sbjct: 3   GDPEAGAKAF-NQCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGM 61
Query: 57  YSAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
             A  KG+A  W+E+    Y+ +P K++           KM F  LKK  D  ++ AYL+
Sbjct: 62  KEAGAKGLA--WDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQ 118
Query: 109 E 109
           +
Sbjct: 119 Q 119

>pdb|2BGV|X Chain X, X-Ray Structure Of Ferric Cytochrome C-550 From Paracoccus Versutus Length = 134

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 27/123 (21%)
Query: 10  GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSY---- 57
           G+   GEK F  KC  CH V        VKG   K GPNL G+ GR+  +  G+ Y    
Sbjct: 3   GDAAKGEKEF-NKCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGI 59
Query: 58  -SAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
              A K   ++W E  L +Y+ +PK ++          TKM F   K  +++AD++A+L 
Sbjct: 60  LEVAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKMTF---KLGKNQADVVAFLA 116
Query: 109 EST 111
           + +
Sbjct: 117 QHS 119

>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From Paracoccus Denitrificans Refined To 1.7 Angstroms Resolution Length = 129

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 27/123 (21%)
Query: 10  GNPKAGEKIFKTKCAQCH--------TVVKGAGHKQGPNLNGLFGRQSGTTPGYSY---- 57
           G+   GEK F  KC  CH         ++KG   K GPNL G+ GR+  +  G+ Y    
Sbjct: 3   GDAAKGEKEF-NKCKACHMIQAPDGTDIIKGG--KTGPNLYGVVGRKIASEEGFKYGEGI 59
Query: 58  -SAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
              A K   + W E  L +Y+ +PK ++          TKM F   K  +++AD++A+L 
Sbjct: 60  LEVAEKNPDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLA 116
Query: 109 EST 111
           +++
Sbjct: 117 QNS 119

>pdb|2BH4|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550 From Paracoccus Versutus Determined At 100 K. Length = 134

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 27/123 (21%)
Query: 10  GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSY---- 57
           G+   GEK F  KC  CH V        VKG   K GPNL G+ GR+  +  G+ Y    
Sbjct: 3   GDAAKGEKEF-NKCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGI 59
Query: 58  -SAANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
              A K   ++W E  L +Y+ +PK ++          TK  F   K  +++AD++A+L 
Sbjct: 60  LEVAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTF---KLGKNQADVVAFLA 116
Query: 109 EST 111
           + +
Sbjct: 117 QHS 119

>pdb|155C|A Chain A, The Structure Of Paracoccus Denitrificans Cytochrome C550 Length = 135

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 10  GNPKAGEKIFKTKCAQCHTV-----VKGAGHKQGPNLNGLFGRQSGTTPGYSY-----SA 59
           G+   GEK F  KC  CH +         G K GPNL G+ GR+  +  G+ Y       
Sbjct: 4   GDAAKGEKEF-NKCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEV 62
Query: 60  ANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKES 110
           A K   + W E  L +Y+ +PK  +          TKM F   K  +++AD++A+L + 
Sbjct: 63  AEKNPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQD 118

>pdb|1VYD|A Chain A, Crystal Structure Of Cytochrome C2 Mutant G95e Length = 116

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 22/117 (18%)
Query: 10  GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           G+   GEK F  KC  CH++        VKGA  K GPNL G+ GR +GT P + Y  + 
Sbjct: 1   GDAAKGEKEF-NKCKTCHSIIAPDGTEIVKGA--KTGPNLYGVVGRTAGTYPEFKYKDSI 57
Query: 62  KGMAV---IWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYL 107
             +      W E+ +  Y+ +P  ++          T+M F   K  +D A  +A +
Sbjct: 58  VALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASV 114

>pdb|1C2R|A Chain A, Molecular Structure Of Cytochrome C2 Isolated From Rhodobacter Capsulatus Determined At 2.5 Angstroms Resolution Length = 116

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 10 GNPKAGEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
          G+   GEK F  KC  CH++        VKGA  K GPNL G+ GR +GT P + Y  + 
Sbjct: 1  GDAAKGEKEF-NKCKTCHSIIAPDGTEIVKGA--KTGPNLYGVVGRTAGTYPEFKYKDSI 57
Query: 62 KGMAV---IWEEKTLYDYLLNPKKYI 84
            +      W E+ +  Y+ +P  ++
Sbjct: 58 VALGASGFAWTEEDIATYVKDPGAFL 83

>pdb|1C2N|A Chain A, Cytochrome C2, Nmr, 20 Structures Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 15  GEKIFKTKCAQCHTV--------VKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAV 66
           GEK F  KC  CH++        VKGA  K GPNL G+ GR +GT P + Y  +   +  
Sbjct: 27  GEKEF-NKCKTCHSIIAPDGTEIVKGA--KTGPNLYGVVGRTAGTYPEFKYKDSIVALGA 83
Query: 67  ---IWEEKTLYDYLLNPKKYI 84
               W E+ +  Y+ +P  ++
Sbjct: 84  SGFAWTEEDIATYVKDPGAFL 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	6e-66
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	3e-63
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	1e-62
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	2e-61
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	2e-60
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	4e-60
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	1e-56
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	1e-54
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	4e-51
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	5e-51
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	3e-48
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	3e-47
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	2e-46
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	6e-46
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	2e-45
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	6e-45
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	4e-22
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	6e-17
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	4e-13
3cp5_A	124	Cytochrome C; electron transfer protein, electron	1e-12
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	1e-11
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	3e-11
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	2e-10
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	5e-10
1e29_A	135	Cytochrome C549; electron transport, PSII associat	7e-09
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	1e-08
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	5e-07
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	3e-06
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	3e-05
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	7e-05
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	8e-05
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	3e-04
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	4e-04
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	6e-04
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	6e-04
2xts_B	205	Cytochrome; oxidoreductase-electron transport comp	6e-04
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	7e-04
3cu4_A	85	Cytochrome C family protein; monoheme cytochrome,	8e-04

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1 Length = 112

 Score =  193 bits (493), Expect = 6e-66
 Identities = 99/111 (89%), Positives = 104/111 (93%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A+
Sbjct: 2   ASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTAD 61

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K MAVIWEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLI+YLKE+T+
Sbjct: 62  KNMAVIWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLISYLKEATS 112

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ... Length = 103

 Score =  186 bits (474), Expect = 3e-63
 Identities = 60/103 (58%), Positives = 74/103 (71%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+   G+K F  KCAQCHTV  G  HK GPNL GLFGR++G   GYSY+ ANK   ++W 
Sbjct: 1   GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct: 61  NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ... Length = 108

 Score =  184 bits (470), Expect = 1e-62
 Identities = 61/106 (57%), Positives = 74/106 (69%)

Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61

Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NP KYIPGTKM F GLKK +DR DLI YLK++ 
Sbjct: 62  VLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRNDLITYLKKAC 107

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1 Length = 106

 Score =  181 bits (463), Expect = 2e-61
 Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
            APPG+P  G+ +F T C  CHT +KG  +K GP+L G+ GR SG  PGY+YS AN    
Sbjct: 2   SAPPGDPVEGKHLFHTICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSG 60

Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           ++W    L+ Y+ +P+K +PGTKM +PG   PQ RAD+IAYL+
Sbjct: 61  IVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 103

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A* Length = 107

 Score =  178 bits (454), Expect = 4e-60
 Identities = 50/102 (49%), Positives = 70/102 (68%), Gaps = 1/102 (0%)

Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
           +  +GE++FK +C  CH++  GA +K GP LNGLFGR SGT  G++YS ANK   + W E
Sbjct: 2   DAASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTE 60

Query: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           +   +Y+ +PK  IPGTKM+F G+K  Q  +DLIAY+K+  A
Sbjct: 61  EVFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A* Length = 140

 Score =  170 bits (434), Expect = 1e-56
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 8   PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
              +P AGEK+F  KC  CH +        GP+LNG+ GR      G++YS   K     
Sbjct: 40  ASADPAAGEKVFG-KCKACHKL--DGNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGD 96

Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
           W  + L ++L NPK  + GTKM F GL K +DRA+LIAYL+ 
Sbjct: 97  WTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEG 138

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1 Length = 100

 Score =  164 bits (418), Expect = 1e-54
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 5/103 (4%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTT-PGYSYSAANKGMAVIW 68
           G+  AGEK F   C  CH   K      GP L G+ G ++G    GY++S A K   + W
Sbjct: 2   GDAAAGEKAFA-PCKACHNFEKN---GVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTW 57

Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           ++  L  +L +PKK +PGTKMVFPG+  P+   D+IAYLK  +
Sbjct: 58  DQADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLKTKS 100

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1 Length = 121

 Score =  156 bits (396), Expect = 4e-51
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 19/119 (15%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA---V 66
           G+P  GE +FK KC  CH V   A +  GP L G+  RQ+GT PG++YSA N       +
Sbjct: 3   GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGL 61

Query: 67  IWEEKTLYDYLLNPKKYIP--------------GTKMVFPGLKKPQDRADLIAYLKEST 111
            W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLK+ +
Sbjct: 62  HWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQFS 119

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A* Length = 112

 Score =  155 bits (395), Expect = 5e-51
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 13/110 (11%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA---V 66
           G+  AGEK+ K KC  CHT  +G  +K GPNL G+F   +     Y+YS +   M    +
Sbjct: 2   GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGL 60

Query: 67  IWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
            W E  L  Y+ NPK ++          +KM F  L K  +  ++IAYLK
Sbjct: 61  TWTEANLAAYVKNPKAFVLEKSGDPKAKSKMTF-KLTKDDEIENVIAYLK 109

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1 Length = 135

 Score =  149 bits (378), Expect = 3e-48
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 22/118 (18%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKG-----AGHKQGPNLNGLFGRQSGTTPGYSYS-----A 59
           G+   GEK F  KC  CH +         G K GPNL G+ GR+  +  G+ Y       
Sbjct: 4   GDAAKGEKEFN-KCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEV 62

Query: 60  ANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKE 109
           A K   + W E  L +Y+ +PK  +          TKM F   K  +++AD++A+L +
Sbjct: 63  AEKNPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQ 117

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A* Length = 134

 Score =  147 bits (372), Expect = 3e-47
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 17/119 (14%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYS----- 58
           G+   GEK F  KC  CH V          G K GPNL G+ GR+  +  G+ Y      
Sbjct: 3   GDAAKGEKEFN-KCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILE 61

Query: 59  AANKGMAVIWEEKTLYDYLLNPKKYIP-GTKMVFPGLKK----PQDRADLIAYLKESTA 112
            A K   ++W E  L +Y+ +PK ++   T       KK     +++AD++A+L + + 
Sbjct: 62  VAEKNPDMVWSEADLIEYVTDPKPWLVEKTGDSAAKTKKTFKLGKNQADVVAFLAQHSP 120

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A* Length = 116

 Score =  144 bits (365), Expect = 2e-46
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%)

Query: 10  GNPKAGEKIFKTKCAQCHTVV------KGAGHKQGPNLNGLFGRQSGTTPGYSYS---AA 60
           G+   GEK F  KC  CH+++         G K GPNL G+ GR +GT P + Y     A
Sbjct: 1   GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVA 59

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKE 109
                  W E+ +  Y+ +P  ++          T+M F   K  +D A  +A + +
Sbjct: 60  LGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASVVK 116

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1 Length = 137

 Score =  143 bits (363), Expect = 6e-46
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 18/120 (15%)

Query: 7   APPGNPKAGEKIFKTKCAQCHTVV------KGAGHKQGPNLNGLFGRQSGTTPGYSYS-- 58
           A  G+   GEK F  KC  CH+++         G K GPNL G+ GR +GT P + Y   
Sbjct: 19  AFAGDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDS 77

Query: 59  -AANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKE 109
             A       W E+ +  Y+ +P  ++          T M F   K  +D A  +A + +
Sbjct: 78  IVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLASVVK 137

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A* Length = 124

 Score =  142 bits (359), Expect = 2e-45
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 21/121 (17%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVK-------GAGHKQGPNLNGLFGRQSGTTPGY-SYSAAN 61
           G+P+AG K F  +C  CH +V        G   K GPNL G+ GR +GT   +  Y    
Sbjct: 3   GDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGM 61

Query: 62  KGMA---VIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKES 110
           K      + W+E+    Y+ +P K++           KM F  LKK  D  ++ AYL++ 
Sbjct: 62  KEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQV 120

Query: 111 T 111
            
Sbjct: 121 A 121

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A* Length = 114

 Score =  140 bits (355), Expect = 6e-45
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 22/115 (19%)

Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA---VI 67
           + KAGE +FK +C  CH   K   +  GP L G+ GR++GT  G++YS  N       ++
Sbjct: 2   DAKAGEAVFK-QCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLV 57

Query: 68  WEEKTLYDYLLNPKKYIPG--------------TKMVFPGLKKPQDRADLIAYLK 108
           W    +  YL +P  ++                TKM F  L   Q R D++AYL 
Sbjct: 58  WTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLA 111

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} Length = 99

 Score = 82.2 bits (203), Expect = 4e-22
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 13  KAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEK 71
           + G ++++ K C  CH++        GP+  GL+G       G +          + +E 
Sbjct: 7   ELGARLYREKACFSCHSI--DGSRLVGPSFKGLYGSTRTFEDGTTA---------VADEN 55

Query: 72  TLYDYLLNPKKYI----PGTKMVFPGLKKPQDRADLIAYLK 108
            L + +L P   +    P            ++ A LI ++K
Sbjct: 56  YLRESILQPGAKVVQGYPNVMPASYASLSEREVAALIEFIK 96

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida} Length = 110

 Score = 69.3 bits (169), Expect = 6e-17
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQ--GPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
           G+  +GE+IF+T+C+ CHTV      +   GP+L G+  ++      +          ++
Sbjct: 1   GSFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGVTRQRD---ANWLVRWLKVPDQML 57

Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
            E+       +   +      M    L    + + LI+YL+E TA
Sbjct: 58  AEK---DPLAMLLFEQYNRLAMPNMRL-GDAEVSALISYLEEETA 98

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus} Length = 337

 Score = 62.5 bits (152), Expect = 4e-13
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 5   EEAPPGNPKAGEKIFKTKCAQCHTVV-KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG 63
               P   + G+++F+  CA CH V         GP L GL+G ++    G         
Sbjct: 229 ASPAPVADERGQQVFQQNCAACHGVARSMPPAVIGPEL-GLWGNRTSLGAG--------- 278

Query: 64  MAVIWEEKTLYDYLLNPKKYIPGTKM-VFPGLKKPQDRADLIAYLK 108
             V    + L  ++ +P    PG KM  FP L   +D   L+ YL+
Sbjct: 279 -IVENTPENLKAWIRDPAGMKPGVKMPGFPQL-SEEDLDALVRYLE 322

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus} Length = 124

 Score = 58.5 bits (141), Expect = 1e-12
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 5   EEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGM 64
           E+      + GE++F T C  CH + +      GP L  +  R+    P Y  +      
Sbjct: 27  EQIDAALAQQGEQLFNTYCTACHRLDERF---IGPALRDVTKRRG---PVYIMNVMLNPN 80

Query: 65  AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
            +I         ++       GT M    L + +    ++ YL++
Sbjct: 81  GMIQR-----HPVMKQLVQEYGTMMTDMALSE-EQARAILEYLRQ 119

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa} Length = 146

 Score = 56.6 bits (136), Expect = 1e-11
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 19/106 (17%)

Query: 5   EEAPPGNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG 63
           E A       G+ +++   C  CHT+  G G    P L  + GR+ G             
Sbjct: 42  EAAMSAAVVRGKLVWEQNNCVGCHTL-LGEGAYFAPELGNVVGRRGGEE----------- 89

Query: 64  MAVIWEEKTLYDYLLNPKKYIPG-TKMVFPGLKKPQDRADLIAYLK 108
                    L  ++      +PG   M    L       DL  +LK
Sbjct: 90  ----GFNTFLQAWMKIQPLNVPGRRAMPQFHL-SEGQVDDLAEFLK 130

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus} Length = 137

 Score = 55.1 bits (132), Expect = 3e-11
 Identities = 25/134 (18%), Positives = 35/134 (26%), Gaps = 51/134 (38%)

Query: 6   EAPPGNPKAGEKIFKTK----CAQCHTVVKGAGHKQ----GPNLNGLFGRQSGTTPGYSY 57
              PGNP+ G +I  T     C  CH +      +      P L+G   R          
Sbjct: 20  TGAPGNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGDR---------- 69

Query: 58  SAANKGMAVIWEEKTLYDYLLNPKKYIPGTK-----------------------MVFPGL 94
                     W E  L   + N K    GT                             +
Sbjct: 70  ----------WTEAQLRGIVANAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPI 119

Query: 95  KKPQDRADLIAYLK 108
              Q   D++A+L 
Sbjct: 120 LNAQQIEDVVAFLV 133

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V* Length = 137

 Score = 53.6 bits (128), Expect = 2e-10
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 17/103 (16%)

Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
                 G+++F+  CA CH    G   K  P+L+      +  TP               
Sbjct: 23  EKQYLEGKRLFQYACASCHV---GGITKTNPSLDLRTETLALATPP------------RD 67

Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
             + L DY+ NP  Y  G + +   +      AD+   ++  T
Sbjct: 68  NIEGLVDYMKNPTTY-DGEQEIA-EVHPSLRSADIFPKMRNLT 108

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B* Length = 138

 Score = 52.5 bits (125), Expect = 5e-10
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 51/133 (38%)

Query: 7   APPGNPKAGEKIFKTK----CAQCHTVVKGAGHK----QGPNLNGLFGRQSGTTPGYSYS 58
             PG+P  G ++   +    C  CH V + A  +     GP+L+G+  R           
Sbjct: 22  DAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR----------- 70

Query: 59  AANKGMAVIWEEKTLYDYLLNPKKYIPGTK-----------------------MVFPGLK 95
                    + E  +   L+N K   P T                             L 
Sbjct: 71  ---------YPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLM 121

Query: 96  KPQDRADLIAYLK 108
                 D++AYL 
Sbjct: 122 TAGQIEDVVAYLM 134

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1 Length = 135

 Score = 48.9 bits (116), Expect = 7e-09
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 17/103 (16%)

Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
                 G+KIF   C QCH        K   N++      +G  P               
Sbjct: 23  ARQFTNGQKIFVDTCTQCHL---QGKTKTNNNVSLGLADLAGAEPR------------RD 67

Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
               L ++L NPK Y  G       L     R D+   ++  T
Sbjct: 68  NVLALVEFLKNPKSY-DGEDDY-SELHPNISRPDIYPEMRNYT 108

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1 Length = 163

 Score = 49.1 bits (116), Expect = 1e-08
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 8   PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVI 67
                  G+++F+  CA CH    G   K  P+L+      +  TP              
Sbjct: 48  TEKQYLEGKRLFQYACASCHV---GGITKTNPSLDLRTETLALATPP------------R 92

Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
              + L DY+ NP  Y  G + +   +      AD+   ++  T
Sbjct: 93  DNIEGLVDYMKNPTTY-DGEQEI-AEVHPSLRSADIFPKMRNLT 134

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B* Length = 208

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 14  AGEKIFKTKCAQCHTVVKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEK 71
               +    C  CH +          GP+L G +GR+   +                + K
Sbjct: 116 PPGTVSGGNCYACHQLDPKEVSYGTLGPSLVG-YGRERNFSA--------------EDAK 160

Query: 72  TLYDYLLNPKKYIPGTKM-VF--PGLKKPQDRADLIAYL 107
             +  + + +  +  + M  F   G+   Q   D++AYL
Sbjct: 161 IAFAKVYDAQASLACSSMPRFGVNGVLTEQQIKDVVAYL 199

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1 Length = 129

 Score = 42.1 bits (98), Expect = 3e-06
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 15/75 (20%)

Query: 9  PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
              K G+++F   CAQCH        +  P++N      +  TP               
Sbjct: 21 LKEIKKGQQVFNAACAQCHA---LGVTRTNPDVNLSPEALALATPP------------RD 65

Query: 69 EEKTLYDYLLNPKKY 83
              L DY+ NP  Y
Sbjct: 66 NIAALVDYIKNPTTY 80

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP} Length = 93

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
            +  AG ++F   CA CH    G  +   P              GY   + +   AV + 
Sbjct: 1   ADAAAGAQVFAANCAACH---AGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAY- 56

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
                  + N +  +P     F G     D A++ AY+ + 
Sbjct: 57  ------QVTNGQGAMPA----FGGRLSDADIANVAAYIADQ 87

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A* Length = 71

 Score = 37.1 bits (86), Expect = 7e-05
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 30/96 (31%)

Query: 15  GEKIFKTKCAQCHTV-VKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTL 73
            E + + KC  CH   + GA     P ++      S                    E+ +
Sbjct: 3   AEAVVQQKCISCHGGDLTGA---SAPAIDKAGANYS--------------------EEEI 39

Query: 74  YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
            D +LN +  +P       G+ K  +   + A+L E
Sbjct: 40  LDIILNGQGGMP------GGIAKGAEAEAVAAWLAE 69

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} Length = 88

 Score = 37.5 bits (87), Expect = 8e-05
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 19/101 (18%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+  AGE+IF   CA CH      G                        A ++ +A    
Sbjct: 1   GDVGAGEQIFNANCAACH----AGG-----------QNVIMPEKTLEKEALDQYLAGGRT 45

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           EK++   +   K  +P     F G    ++ A++ AY+  S
Sbjct: 46  EKSIISQVTGGKNAMPA----FGGRLSDEEIANVAAYVLAS 82

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} Length = 99

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 18/106 (16%), Positives = 28/106 (26%), Gaps = 20/106 (18%)

Query: 5   EEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGM 64
                     G ++F T CA CH    G        L       +G              
Sbjct: 12  GAETAVPNSGGGELFATHCAGCH-PQGGNTVHPEKTLARARREANGIRT----------- 59

Query: 65  AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
                 + +  Y+ NP   +P        +  P D   +  Y+  S
Sbjct: 60  -----VRDVAAYIRNPGPGMPAFG---EAMIPPADALKIGEYVVAS 97

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1 Length = 91

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)

Query: 13 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGL 44
            G+K+F   CA CH             L   
Sbjct: 7  ADGKKVFAGNCAACHL-GGNNSVLADKTLKKD 37

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A* Length = 90

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 19/98 (19%)

Query: 13  KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKT 72
             G ++F   CA CH    G  +   P                  +A  + +   ++ ++
Sbjct: 4   ALGAQVFNGNCAACHM---GGRNSVMPE------------KTLDKAALEQYLDGGFKVES 48

Query: 73  LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
           +   + N K  +P     +      ++   +  Y+ + 
Sbjct: 49  IIYQVENGKGAMPA----WADRLSEEEIQAVAEYVFKQ 82

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans} Length = 87

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 6  EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNL 41
          +AP     AGEK++++ C  CH     +G    P L
Sbjct: 3  DAPAQLDPAGEKLYRSACVVCH----ASGVANAPKL 34

>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus} Length = 205

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 13/102 (12%)

Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
               G+   G+ +F   CA CH      G    P L G  G  +   P  +  +      
Sbjct: 29  RPGSGDVATGDALFADNCASCHGDF-AEGLDSWPVLAGGDGSLTDPRPVKTIGS---YWP 84

Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
            +    T+YDY+     +               D   + A+L
Sbjct: 85  YL---STVYDYVHRSMPFG------SAQTLSVDDTYAITAFL 117

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A* Length = 89

 Score = 34.9 bits (80), Expect = 7e-04
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 17/100 (17%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+  AG  +F   CA CH +           L              S  A          
Sbjct: 1   GDVAAGASVFSANCAACH-MGGRNVIVANKTL------------SKSDLAKYLKGFDDDA 47

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
              +   + N K  +PG    F G   P    D+ AY+ +
Sbjct: 48  VAAVAYQVTNGKNAMPG----FNGRLSPLQIEDVAAYVVD 83

>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens} Length = 85

 Score = 34.9 bits (80), Expect = 8e-04
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 20/101 (19%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+   G ++F T CA CH                     +   P  + + A +    I  
Sbjct: 3   GSGAGGGELFATHCAGCHP-----------------QGGNTVHPEKTLARARREANGIRT 45

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
            + +  Y+ NP   +P        +  P D   +  Y+  S
Sbjct: 46  VRDVAAYIRNPGPGMPAFG---EAMIPPADALKIGEYVVAS 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	99.95
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	99.95
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	99.95
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	99.95
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	99.94
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	99.94
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	99.94
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	99.94
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	99.93
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	99.93
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	99.93
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	99.93
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	99.93
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	99.92
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	99.92
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	99.9
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	99.82
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	99.79
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	99.78
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	99.77
1cno_A	87	Cytochrome C552; electron transport, pseudomonas n	99.75
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	99.73
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	99.72
1c53_A	79	Cytochrome C553; electron transport; HET: HEM; 1.8	99.71
2zzs_A	103	Cytochrome C554; C-type cytochrome, electron trans	99.71
2exv_A	82	Cytochrome C-551; alpha helix, heme C, electron tr	99.7
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	99.7
1cch_A	82	Cytochrome C551; electron transport; HET: HEM; NMR	99.7
3ph2_B	86	Cytochrome C6; photosynthesis, cytochrome F, photo	99.7
2ce0_A	105	Cytochrome C6; chloroplast, electron transport, he	99.7
1wve_C	80	4-cresol dehydrogenase [hydroxylating] cytochrome	99.7
3cu4_A	85	Cytochrome C family protein; monoheme cytochrome,	99.7
1e29_A	135	Cytochrome C549; electron transport, PSII associat	99.7
3cp5_A	124	Cytochrome C; electron transfer protein, electron	99.7
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	99.69
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	99.68
1gdv_A	85	Cytochrome C6; RED ALGA, electron transport; HET:	99.68
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	99.68
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	99.67
2d0s_A	79	Cytochrome C, cytochrome C552; heme protein, elect	99.67
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	99.67
1a56_A	81	C-551, ferricytochrome C-552; hemoprotein, prokary	99.66
1c6r_A	89	Cytochrome C6; electron transport protein, reduced	99.66
2c8s_A	172	Cytochrome C-L; HAEM, heme, electron transport, me	99.66
2d0w_A	170	Cytochrome CL; electron transfer, electron transpo	99.66
2zxy_A	87	Cytochrome C552, cytochrome C555; heme protein, ox	99.65
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	99.65
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	99.64
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	99.63
1ayg_A	80	Cytochrome C-552; electron transport, porphyrin, f	99.63
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	99.63
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	99.6
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	99.34
1c52_A	131	Cytochrome-C552; electron transport protein, MAD,	99.56
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	99.56
1kx2_A	81	Mono-heme C-type cytochrome SCYA; HAEM protein, fe	99.55
1gks_A	78	Cytochrome C551; halophilic purple phototrophic ba	99.55
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	99.54
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	99.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.53
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	99.52
3mk7_B	203	Cytochrome C oxidase, CBB3-type, subunit O; TM hel	99.5
1cc5_A	83	Cytochrome C5; electron transport (heme protein);	99.47
2xts_B	205	Cytochrome; oxidoreductase-electron transport comp	99.45
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.44
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.42
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	99.41
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	99.4
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.4
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	99.37
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	99.37
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	99.35
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	99.34
2blf_B	81	SORB, sulfite\:cytochrome C oxidoreductase subunit	98.85
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	98.83
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	98.81
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	98.75
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	98.73
3a9f_A	92	Cytochrome C; alpha helix, mono heme, electron tra	98.7
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	98.7
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	98.7
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	98.69
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	98.67
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	98.67
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	98.63
1e8e_A	124	Cytochrome C''; oxidoreductase(cytochrome), ligand	98.6
1dw0_A	112	Cytochrome C; asparagine ligation, oxygen binding,	98.59
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.54
3cx5_D	248	Cytochrome C1, heme protein, mitochondrial; comple	98.53
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	98.52
3sjl_A	373	Methylamine utilization protein MAUG; MAUG, C-heme	98.47
2yiu_B	263	Cytochrome C1, heme protein; oxidoreductase; HET:	98.39
1pp9_D	241	Cytochrome C-1, cytochrome C1, heme protein, mitoc	98.39
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	98.37
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	98.2
1pby_A	489	Quinohemoprotein amine dehydrogenase 60 kDa subuni	98.05
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	98.0
1zrt_D	258	Cytochrome C1; cytochrome BC1, membrane protein, h	97.43
2qjy_B	269	Cytochrome C1; cytochrome B, 8 TM helixces cytochr	97.35
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	97.16
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	97.07
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	96.96
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.76
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	96.71
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	96.52
2fw5_A	139	DHC, diheme cytochrome C; electron transfer, elect	95.97
2fwt_A	125	DHC, diheme cytochrome C; diheme protein, electron	95.94
3u99_A	148	Diheme cytochrome C; cytochrome C fold, electron t	93.98
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	92.05
1pby_A	489	Quinohemoprotein amine dehydrogenase 60 kDa subuni	91.64
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	90.86
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	86.15
3sjl_A	373	Methylamine utilization protein MAUG; MAUG, C-heme	84.98

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1

Probab=99.95  E-value=2.3e-28  Score=148.53  Aligned_cols=108  Identities=89%  Similarity=1.447  Sum_probs=95.9

Q ss_pred             CCCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033769            5 EEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI   84 (112)
Q Consensus         5 ~~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~   84 (112)
                      .+...+++++|++||.++|+.||+.++.+...++|+|.++..+..+..++|.|+..++..+..|+.++|.++|+++....
T Consensus         5 ~~~~~~~~~~G~~lf~~~C~~CHg~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~   84 (112)
T 1ccr_A            5 SEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXKYI   84 (112)
T ss_dssp             GGSCCCCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHS
T ss_pred             hhcccccHHHHHHHHHhhcHHhCCCCCCCCCCCCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccccC
Confidence            34667899999999998999999998765567899999998888888888999888888888999999999999987777


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           85 PGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        85 ~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +++||+|.++++++||++|++||++|++
T Consensus        85 ~g~~m~~~~~ls~~ei~~l~aYl~~l~~  112 (112)
T 1ccr_A           85 PGTKMVFPGLXKPQERADLISYLKEATS  112 (112)
T ss_dssp             TTCCCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            8899999888899999999999999874

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...

Probab=99.95  E-value=6.7e-28  Score=145.52  Aligned_cols=107  Identities=57%  Similarity=1.027  Sum_probs=93.9

Q ss_pred             CCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC
Q 033769            6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP   85 (112)
Q Consensus         6 ~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~   85 (112)
                      ++..+++.+|++||.++|+.||++++.+...+||+|.++..+..+..++|.|+..+...++.|+.++|..+|+++....|
T Consensus         2 ~~~~~~~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~   81 (108)
T 1ycc_A            2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKYIP   81 (108)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHST
T ss_pred             CcccccHHHHHHHHHhhCcccCCCCCCCCCCCCCChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhhcC
Confidence            35678999999999989999999987666678999999988888777888888777777889999999999999887778


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           86 GTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        86 ~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ++.|||.++++++||++|++||++|++
T Consensus        82 ~~~Mp~~~l~s~~ei~~l~aYl~sl~e  108 (108)
T 1ycc_A           82 GTKMAFGGLKKEKDRNDLITYLKKACE  108 (108)
T ss_dssp             TCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            888898887789999999999999975

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...

Probab=99.95  E-value=1.7e-27  Score=142.46  Aligned_cols=103  Identities=58%  Similarity=1.066  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||..+|+.||++++.+...+||+|.++..+..+..++|.|+..++..++.|+.++|..+|+++....|++.|
T Consensus         1 gd~~~G~~lf~~~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~M   80 (103)
T 1i54_A            1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM   80 (103)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred             CcHHHHHHHHHHhhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcC
Confidence            47889999999899999999876566789999999888888888888888888888899999999999999777788888


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           90 VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ||.++++++||++|++||++|++
T Consensus        81 p~~~l~~~~ei~~l~aYl~sl~~  103 (103)
T 1i54_A           81 IFAGIKKKGERQDLVAYLKSATS  103 (103)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             CccCCCCHHHHHHHHHHHHHhcC
Confidence            88777679999999999999875

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1

Probab=99.94  E-value=3.3e-27  Score=142.11  Aligned_cols=104  Identities=49%  Similarity=1.000  Sum_probs=91.4

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      .+.+++++|++||.++|+.||+.++. +..+||+|.++..+..+..++|.|+..++..++.|+.++|..+|++|....++
T Consensus         3 ~~~~~~~~G~~lf~~~C~~CH~~~g~-~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g   81 (106)
T 1hro_A            3 APPGDPVEGKHLFHTICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPG   81 (106)
T ss_dssp             CCCCCHHHHHHHHTTTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTT
T ss_pred             cccccHHHHHHHHHcchhhhCCCCCC-CCCCCCCCCCccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCC
Confidence            45689999999999899999999854 35689999999888877778888888887788899999999999998777788


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +.|||.++++++||++|++||++|+
T Consensus        82 ~~Mp~~~~~~~~ei~~l~aYl~sl~  106 (106)
T 1hro_A           82 TKMGYPGQPDPQKRADIIAYLETLK  106 (106)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC
Confidence            8899888888999999999999874

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*

Probab=99.94  E-value=3.3e-27  Score=148.68  Aligned_cols=101  Identities=43%  Similarity=0.787  Sum_probs=92.3

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      ..+++.+|+++| ++|+.||+++  +...+||+|.++.+|..+..++|.|+..++..++.|+.++|.+||++|....|++
T Consensus        40 ~~~d~~~G~~lf-~~C~~CH~~~--~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt  116 (140)
T 3m97_X           40 ASADPAAGEKVF-GKCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGT  116 (140)
T ss_dssp             HTCCHHHHHHHG-GGTTTTCCSS--SCCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTC
T ss_pred             cccCHHHHHHHH-HhhhhhcCCC--CCCCcCCCccccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCC
Confidence            357889999999 7999999983  3467899999999999999999999999988899999999999999999888999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .|||.++++++|+++|++||++|+
T Consensus       117 ~Mp~~gllsdedi~aLiAYL~sLk  140 (140)
T 3m97_X          117 KMAFAGLPKIEDRANLIAYLEGQQ  140 (140)
T ss_dssp             SCCCCCCCSHHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcC
Confidence            999988989999999999999985

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*

Probab=99.94  E-value=7.7e-27  Score=140.78  Aligned_cols=102  Identities=49%  Similarity=0.924  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||.. |+.||++++.+...+||+|.++..+..+..++|.|+..++..++.|+.++|..+|+++....+++.|
T Consensus         1 gd~~~G~~lf~~-C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~M   79 (107)
T 1co6_A            1 QDAASGEQVFKQ-CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKM   79 (107)
T ss_dssp             CCHHHHHHHHHH-HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHHH-hHhhCCCCCCCCCCCCCCcccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCCC
Confidence            478899999998 9999999876566789999999988888888999988888889999999999999998777788889


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           90 VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ||.++++++||++|++||+++..
T Consensus        80 p~~~l~s~~ei~~l~aYl~sl~~  102 (107)
T 1co6_A           80 IFAGVKDEQKVSDLIAYIKQFNA  102 (107)
T ss_dssp             CCCCCCCHHHHHHHHHHHHTBCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHccc
Confidence            98888789999999999999863

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*

Probab=99.94  E-value=3.5e-27  Score=146.08  Aligned_cols=102  Identities=36%  Similarity=0.790  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHhhCcccccccC-------CCCCCCCCCCCCccCCCCCCCCCC-ccchhc---cccceeeCHHHHHHHH
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVK-------GAGHKQGPNLNGLFGRQSGTTPGY-SYSAAN---KGMAVIWEEKTLYDYL   77 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~-------~~~~~~gP~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~~~l   77 (112)
                      .+++++|+++|+ +|++||++++       ++.+.+||+|.++.+|..+..++| .|+..+   +..++.|+.++|..||
T Consensus         2 ~gd~~~G~~~F~-~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l   80 (124)
T 1cxc_A            2 EGDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV   80 (124)
T ss_dssp             CSCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHH
T ss_pred             CCCHHHHHHHHH-hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHH
Confidence            478999999995 8999999875       245679999999999998888888 788776   4578999999999999


Q ss_pred             hCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           78 LNPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        78 ~~~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      .+|...+|+        +.|+|. +++++|+++|++||++|+.
T Consensus        81 ~~P~~~~pg~~~d~~a~t~M~~~-l~~~~d~~dliaYL~sl~~  122 (124)
T 1cxc_A           81 QDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVAV  122 (124)
T ss_dssp             HCHHHHHHHHHSCTTCCCSCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred             hChHhhCCCcccCcccCCCCCCc-cCCHHHHHHHHHHHHHcCC
Confidence            999888888        899988 7789999999999999863

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*

Probab=99.93  E-value=4.1e-27  Score=147.52  Aligned_cols=99  Identities=33%  Similarity=0.697  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHhhCcccccccCC------CCCCCCCCCCCccCCCCCCCCCCccchhc-----cccceeeCHHHHHHHH
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN-----KGMAVIWEEKTLYDYL   77 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l   77 (112)
                      .+++++|+++|.+ |++||++++.      +.+.+||+|.++.+|..+..++|.|+..+     +..++.|+.++|..||
T Consensus         2 ~gd~~~G~~lF~~-C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l   80 (134)
T 2bh4_X            2 EGDAAKGEKEFNK-CKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYV   80 (134)
T ss_dssp             CCCHHHHHHHGGG-TTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHH
T ss_pred             CCcHHHHHHHHHH-hHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHH
Confidence            5789999999986 9999999865      45789999999999999999999999877     7789999999999999


Q ss_pred             hCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           78 LNPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        78 ~~~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ++|....|+        +.|+|.  |+++|+ +||+||++|+
T Consensus        81 ~~P~~~~pg~~~d~~a~t~Mpf~--Ls~~e~-dliaYL~sl~  119 (134)
T 2bh4_X           81 TDPKPWLVEKTGDSAAKTKKTFK--LGKNQA-DVVAFLAQHS  119 (134)
T ss_dssp             HCHHHHHHHHHCCTTCCCSCCCC--CCSCHH-HHHHHHHHTC
T ss_pred             hCHHhcCCCcccCccccCCCCCC--CChHHH-HHHHHHHHcC
Confidence            999887787        899987  678888 9999999986

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*

Probab=99.93  E-value=4.8e-27  Score=143.95  Aligned_cols=99  Identities=35%  Similarity=0.737  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHhhCcccccccCC------CCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNP   80 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~   80 (112)
                      +++++|+++|. +|++||+++++      +.+.+||+|.++.+|..+..++|.|++.+   ...++.|+.++|..||++|
T Consensus         1 gd~~~G~~~F~-~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P   79 (116)
T 1vyd_A            1 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP   79 (116)
T ss_dssp             CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHH-cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCH
Confidence            47899999998 89999999854      45678999999999999999999999988   4688999999999999999


Q ss_pred             CCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           81 KKYIPG--------TKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        81 ~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ....|+        +.|+|. +.++++  +|++||++|++
T Consensus        80 ~~~~pg~~~d~~~~t~Mpf~-l~~~~~--dliaYL~sl~~  116 (116)
T 1vyd_A           80 GAFLKEKLDDKKAKTEMAFK-LAKGGE--DVAAYLASVVK  116 (116)
T ss_dssp             HHHHHHHHTCTTCCCSCCCC-CSSCHH--HHHHHHHHTCC
T ss_pred             HHhCCCcccCccccCCCCCC-CCCHHH--HHHHHHHHhcC
Confidence            888888        899986 543444  99999999975

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*

Probab=99.93  E-value=2e-26  Score=140.00  Aligned_cols=100  Identities=40%  Similarity=0.735  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      +++++|++||+ +|+.||++++.+...++|.|.++.+|..+..++|.|+..+   +..++.|+.++|..+|++|....++
T Consensus         2 gd~~~G~~lf~-~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~~~~g   80 (112)
T 3c2c_A            2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLE   80 (112)
T ss_dssp             CCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHHHHHHH-hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhhhcCC
Confidence            68899999998 9999999987666678999999999998889999888766   4578899999999999988654443


Q ss_pred             --------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 --------TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 --------~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                              +.|||. +++++||++|++||++|+
T Consensus        81 ~~~~~~~~~~Mp~~-l~~~~di~~l~aYl~sl~  112 (112)
T 3c2c_A           81 KSGDPKAKSKMTFK-LTKDDEIENVIAYLKTLK  112 (112)
T ss_dssp             HHCCTTCCCSCCCC-CCCHHHHHHHHHHHTTCC
T ss_pred             CcCCccccCCCCCc-CCCHHHHHHHHHHHHHcC
Confidence                    678877 777899999999999975

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1

Probab=99.93  E-value=5.7e-26  Score=142.46  Aligned_cols=99  Identities=33%  Similarity=0.694  Sum_probs=87.9

Q ss_pred             CCCHHHHHHHHHhhCcccccccCC-----CCCCCCCCCCCccCCCCCCCCCCccchhc-----cccceeeCHHHHHHHHh
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKG-----AGHKQGPNLNGLFGRQSGTTPGYSYSAAN-----KGMAVIWEEKTLYDYLL   78 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~-----~~~~~gP~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~   78 (112)
                      .+++++|+++|.+ |++||++++.     +.+.+||+|.++.+|..+..++|.|++.+     +..++.|+.++|..||+
T Consensus         3 ~gd~~~G~~lF~~-CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~   81 (135)
T 155c_A            3 EGDAAKGEKEFNK-CKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVT   81 (135)
T ss_dssp             CCCSHHHHHHHTT-TTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHH
T ss_pred             ccCHHHHHHHHHH-HHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHh
Confidence            4788999999986 9999999864     44678999999999999999999999888     78889999999999999


Q ss_pred             CCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           79 NPKKYIPG--------TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        79 ~~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|....|+        +.|+|.  ++++|+ +|++||++|+
T Consensus        82 ~P~~~~pg~~~~~~~~t~Mpf~--L~~~e~-dliAYL~sl~  119 (135)
T 155c_A           82 DPKPLVKKMTDDKGAKTKMTFK--MGKNQA-DVVAFLAQDD  119 (135)
T ss_dssp             SSTTTTTTTSCCSCCCCSCCCC--CCSCHH-HHHHHHHHHS
T ss_pred             CHHhhCCCccccccccCCCCCC--CCCHHH-HHHHHHHhcC
Confidence            99999998        899987  556667 9999999986

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.93  E-value=1e-25  Score=134.29  Aligned_cols=98  Identities=44%  Similarity=0.887  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCC-CCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      +++++|++||. +|+.||++++   ..+||+|.++.++..+. .++|.|++.++..++.|+.++|..+|+++....+++.
T Consensus         2 gd~~~G~~l~~-~C~~CH~~~~---~~~gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~   77 (100)
T 1qn2_A            2 GDAAAGEKAFA-PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTK   77 (100)
T ss_dssp             CCHHHHHHHTG-GGGGTCCSSS---CSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCS
T ss_pred             ccHHHHHHHHH-HHHHhcCCCC---CCCCCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCC
Confidence            68899999996 5999999873   46799999998888776 7888888888888899999999999999887778888


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhc
Q 033769           89 MVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        89 m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |||.++++++||++|++||++|+
T Consensus        78 Mp~~~~~s~~di~~l~aYl~sl~  100 (100)
T 1qn2_A           78 MVFPGISDPKKVDDIIAYLKTKS  100 (100)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcC
Confidence            99888889999999999999974

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1

Probab=99.92  E-value=2.1e-25  Score=137.04  Aligned_cols=102  Identities=41%  Similarity=0.807  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNPKKYIP   85 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~   85 (112)
                      .+++++|++|| ++|+.||++++.+...+||+|.++..+..+..++|.|+..+   +..++.|+.++|..+|++|....|
T Consensus         2 ~gd~~~G~~lf-~~C~~CH~~~~~~~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~~~~~   80 (121)
T 1jdl_A            2 DGDPAKGEAVF-KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLR   80 (121)
T ss_dssp             -CCHHHHHHHG-GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHH-hhhhhhCCCCCCCCCCCCCCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcccccC
Confidence            47899999999 79999999986556778999999999988888888887765   456788999999999998875555


Q ss_pred             C--------------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           86 G--------------TKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        86 ~--------------~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +              +.|||. +++++||++|++||++|+.
T Consensus        81 g~~~~~~~~~~~~~~~~Mp~~-l~~~~ei~~l~aYL~sl~~  120 (121)
T 1jdl_A           81 KFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFSP  120 (121)
T ss_dssp             HHHHHTTCGGGGSSCCSCCCC-CCCHHHHHHHHHHHGGGCC
T ss_pred             CcccccchhhcccccccCCcc-CCCHHHHHHHHHHHHHccc
Confidence            4              778877 6555999999999999863

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1

Probab=99.92  E-value=1.9e-25  Score=140.33  Aligned_cols=100  Identities=33%  Similarity=0.688  Sum_probs=86.6

Q ss_pred             CCCHHHHHHHHHhhCcccccccCC------CCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLN   79 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~   79 (112)
                      .+++++|+++|. +|++||++++.      +...+||+|.++.+|..+..++|.|++.+   +..|+.|++++|..||++
T Consensus        21 a~~~~~G~~lf~-~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~   99 (137)
T 1c2n_A           21 AGDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKD   99 (137)
T ss_dssp             -CCHHHHHHHHH-HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTS
T ss_pred             ccChHHHHHHHH-hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhC
Confidence            378999999999 99999999853      24568999999999999999999998876   367899999999999999


Q ss_pred             CCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           80 PKKYIPG--------TKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        80 ~~~~~~~--------~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      |....|+        +.|||.  ++++|+ +|++||+++++
T Consensus       100 p~~~~~g~~~~~~~~~~Mp~~--Lsd~e~-~liaYL~sl~~  137 (137)
T 1c2n_A          100 PGAFLKEKLDDKKAKTGMAFK--LAKGGE-DVAAYLASVVK  137 (137)
T ss_dssp             TTHHHHHHHTCSCCCCSCCCC--CSSSHH-HHHHHHHHHCC
T ss_pred             HHhhCCCcccccCcCCCCCCC--CCcHHH-HHHHHHHHccC
Confidence            9876666        789975  779999 99999999875

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*

Probab=99.90  E-value=3.2e-24  Score=130.84  Aligned_cols=97  Identities=37%  Similarity=0.785  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      +++++|++||. .|++||+.   +...+||.|.++.++..+..++|.|+..+   +..|+.|+.++|.+||.+|....|+
T Consensus         1 gd~~~G~~lf~-~C~~CH~~---~~~~~GP~l~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g   76 (114)
T 1i8o_A            1 EDAKAGEAVFK-QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK   76 (114)
T ss_dssp             CCHHHHHHHHH-HHTTTCCS---SSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             CcHHHHHHHHH-hHHhhCCC---cccCcCcccccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCC
Confidence            47889999996 99999993   34678999999999999988899888766   3678899999999999999776665


Q ss_pred             --------------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 --------------TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 --------------~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                    +.|+|. +.+++||++|++||++|+
T Consensus        77 ~~~d~~~~~~~~~~~~Mp~~-l~~~~d~~~liaYL~sl~  114 (114)
T 1i8o_A           77 FLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLATLK  114 (114)
T ss_dssp             HHHHTTCGGGCCSCCSSCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             CcccccccccccccCcCCCC-CCCHHHHHHHHHHHHhcC
Confidence                          889977 554599999999999985

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}

Probab=99.82  E-value=4.5e-20  Score=109.06  Aligned_cols=92  Identities=22%  Similarity=0.435  Sum_probs=70.5

Q ss_pred             CCCHHHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-
Q 033769            9 PGNPKAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-   86 (112)
Q Consensus         9 ~~~~~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-   86 (112)
                      .+++++|++||..+ |+.||+.++  .+.++|.|.++.++......         ..+..|+.++|..+|+++....+. 
T Consensus         3 ~~~~~~G~~l~~~~~C~~CHg~~g--~~~~gp~l~~~~~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~~~~g   71 (99)
T 1w2l_A            3 MPLAELGARLYREKACFSCHSIDG--SRLVGPSFKGLYGSTRTFED---------GTTAVADENYLRESILQPGAKVVQG   71 (99)
T ss_dssp             CCHHHHHHHHHHHTSGGGTCCSSS--CCSSSCCSTTCTTCEEEBTT---------SCEEECCHHHHHHHHHSTTSSCBTT
T ss_pred             cccHHHHHHHHhhCChhhcCCCCC--CCCCCCCcccccccccccCC---------CCcccCCHHHHHHHHHccCcccccc
Confidence            46789999999998 999999875  34578999887655422111         134568899999999999865432 


Q ss_pred             --CCCC-CCCCCCHHHHHHHHHHHHhhc
Q 033769           87 --TKMV-FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 --~~m~-~~~~l~~~ei~~l~ayl~sl~  111 (112)
                        +.|| |...++++||++|++||++|+
T Consensus        72 ~~~~Mp~~~~~ls~~ei~~l~~yl~sl~   99 (99)
T 1w2l_A           72 YPNVMPASYASLSEREVAALIEFIKQQQ   99 (99)
T ss_dssp             SCSCCCGGGGGCCHHHHHHHHHHHHTCC
T ss_pred             ccccCccccccCCHHHHHHHHHHHHHcC
Confidence              3564 777789999999999999985

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}

Probab=99.79  E-value=2e-19  Score=112.51  Aligned_cols=86  Identities=30%  Similarity=0.517  Sum_probs=66.2

Q ss_pred             CCCCCHHHHHHHHH----hhCcccccccCCC----CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769            7 APPGNPKAGEKIFK----TKCAQCHTVVKGA----GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus         7 ~~~~~~~~G~~lf~----~~C~~CH~~~~~~----~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      ...+++.+|++||.    .+|+.||+.++.+    ++.++|+|.++..+                    |+.++|..+|.
T Consensus        21 ~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~g~~~~~g~~gP~L~~~~~~--------------------~~~~~l~~~i~   80 (137)
T 2c1d_B           21 GAPGNPEEGVRIMTTNALGNCVACHQIGALPDVEFPGTIAPPLDGAGDR--------------------WTEAQLRGIVA   80 (137)
T ss_dssp             SSCCCHHHHHHHHTCTTTTCGGGTBCCTTCTTCCSCCCSBCCSTTHHHH--------------------SCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhcccccChhhhcCCCCCCCccccccCCCCHhHhhhc--------------------cCHHHHHHHHc
Confidence            44678999999998    7899999997643    23567888865432                    36789999999


Q ss_pred             CCCCCCCCCCCC-CC----------------------CCCCHHHHHHHHHHHHhhcC
Q 033769           79 NPKKYIPGTKMV-FP----------------------GLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        79 ~~~~~~~~~~m~-~~----------------------~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +|....++..|+ |.                      ..+|++||++|++||++|++
T Consensus        81 ~p~~~~~~~~Mp~~~~~~~~~~~g~~~~~~~~Mp~~~~~Ls~~ei~~l~aYl~sl~~  137 (137)
T 2c1d_B           81 NAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLKE  137 (137)
T ss_dssp             HGGGTSTTCSSCCSSCCSCCSSBBSTTSSSBCCSSCCCSSCHHHHHHHHHHHHTCCC
T ss_pred             CccccCCCcccCccccccccccccccccccccChhhhcCCCHHHHHHHHHHHHHccC
Confidence            887655655564 43                      26889999999999999874

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*

Probab=99.78  E-value=3.1e-19  Score=111.68  Aligned_cols=86  Identities=31%  Similarity=0.594  Sum_probs=65.0

Q ss_pred             CCCCCHHHHHHHHHh----hCcccccccCCC----CCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769            7 APPGNPKAGEKIFKT----KCAQCHTVVKGA----GHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~----~C~~CH~~~~~~----~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      ...+++.+|++||.+    +|+.||+.++.+    +..++|+|.++..+                    |+.++|..+|.
T Consensus        22 ~~~~~~~~G~~lf~~~~~~~C~~CH~~~g~~~~~~~~~~gP~L~~~~~~--------------------~~~~~l~~~i~   81 (138)
T 1h32_B           22 DAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILV   81 (138)
T ss_dssp             SSCCCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHHH--------------------SCHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHhhccCCChhhccCCCCcCccccCCcCCCChhHhccc--------------------CCHHHHHHHHh
Confidence            345899999999997    799999997531    34678999876432                    46889999999


Q ss_pred             CCCCCCCCCCCC-C----------------------CCCCCHHHHHHHHHHHHhhcC
Q 033769           79 NPKKYIPGTKMV-F----------------------PGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        79 ~~~~~~~~~~m~-~----------------------~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +++...+++.|| |                      ...||++||++|++||++|++
T Consensus        82 ~~~~~~~~~~Mp~~~~~~~~~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~~  138 (138)
T 1h32_B           82 NSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ  138 (138)
T ss_dssp             CHHHHSTTCSSCCTTCCSCCSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC-
T ss_pred             CcccCCCCCccCccccccccccccccccCcccCcccccCCCHHHHHHHHHHHHhcCC
Confidence            887544554453 3                      236789999999999999864

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}

Probab=99.77  E-value=1.5e-19  Score=108.60  Aligned_cols=80  Identities=31%  Similarity=0.560  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHhhCcccccccCC--CCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKG--AGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP--   85 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~--~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--   85 (112)
                      +++++|++||..+|+.||+.++.  +....+|+|.++..+.                    +.++|..+|.++....+  
T Consensus         1 gd~~~G~~lf~~~C~~CH~~~g~~~g~~~~gP~L~~~~~~~--------------------~~~~l~~~i~~p~~~~~g~   60 (110)
T 2l4d_A            1 GSFTSGEQIFRTRCSSCHTVGNTEPGQPGIGPDLLGVTRQR--------------------DANWLVRWLKVPDQMLAEK   60 (110)
T ss_dssp             ----CHHHHHHHHTTTTCCSSCSBTTBCTTSCCCTTGGGTS--------------------CTTHHHHHTTSHHHHHHTT
T ss_pred             CCHHHHHHHHHHhhHHhcCCCCCCCCCCCCCCChhhhhccc--------------------CHHHHHHHHhChhhhccCc
Confidence            46789999999999999999875  4467899999876543                    23456666665433211  


Q ss_pred             ------------CCCCC-CCCCCCHHHHHHHHHHHHhhc
Q 033769           86 ------------GTKMV-FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        86 ------------~~~m~-~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                  .+.|| | . ||++|+++|++||+++.
T Consensus        61 ~~~~~~~~~g~~~~~Mp~~-~-Ls~~ei~~l~~yl~~~~   97 (110)
T 2l4d_A           61 DPLAMLLFEQYNRLAMPNM-R-LGDAEVSALISYLEEET   97 (110)
T ss_dssp             CHHHHHHHHHHTSCCCCCC-C-CCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhccCcCcCCCC-C-CCHHHHHHHHHHHHHcc
Confidence                        24564 5 4 68999999999999874

>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1

Probab=99.75  E-value=2.6e-19  Score=103.82  Aligned_cols=82  Identities=24%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++.+|++||. +|+.||+.++.+....+|.|.+....                    +..+.|..++...+...+...|
T Consensus         2 ~~~~~G~~ly~-~C~~CHg~~g~g~~~~~P~L~~~~~~--------------------~~~~~l~~~~~g~~~~~~~~~M   60 (87)
T 1cno_A            2 GDIEAGKAKAA-VCAACHGQNGISQVPIYPNLAGQKEQ--------------------YLVAALKAYKAGQRQGGQAPVM   60 (87)
T ss_dssp             CCHHHHHHHGG-GTHHHHCTTSCCSSTTSCCCTTCCHH--------------------HHHHHHHHHHTTCBCSTTHHHH
T ss_pred             ccHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCCCHH--------------------HHHHHHHHHHcCCcCCCccccc
Confidence            68899999999 99999999876555568888753110                    1233444444333322222256


Q ss_pred             -CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           90 -VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        90 -~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                       +|...||++||++|++||+++++
T Consensus        61 p~~~~~ls~~ei~~l~~yl~~l~~   84 (87)
T 1cno_A           61 QGQATALSDADIANLAAYYASNPA   84 (87)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSCT
T ss_pred             HHHHhhCCHHHHHHHHHHHHhCCc
Confidence             57677899999999999999863

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}

Probab=99.73  E-value=4.9e-18  Score=107.02  Aligned_cols=88  Identities=22%  Similarity=0.318  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHH-hhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            8 PPGNPKAGEKIFK-TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         8 ~~~~~~~G~~lf~-~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ..+++++|+++|. .+|+.||+.++.+ ...+|+|.++..+...               ...+.++|..+++++....++
T Consensus        45 ~~~~~~~G~~l~~~~~C~~CH~~~g~g-~~~gP~L~~~~~~~~~---------------~~~~~~~l~~~i~~~~~~~~g  108 (146)
T 3o0r_C           45 MSAAVVRGKLVWEQNNCVGCHTLLGEG-AYFAPELGNVVGRRGG---------------EEGFNTFLQAWMKIQPLNVPG  108 (146)
T ss_dssp             CCHHHHHHHHHHHHHTGGGTSEETTEE-CSSSCBCSSGGGGTTH---------------HHHHHHHHHHHHHHCCCCCTT
T ss_pred             CchHHHHHHHHHHhCCCcccCCCcCCC-CCCCCCchhhhhhccc---------------ccchHHHHHHHHhCcccCCCC
Confidence            4567889999999 4699999997543 4689999987655421               001347899999998877776


Q ss_pred             C-CCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           87 T-KMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        87 ~-~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      . .||... +|++|+++|++||+++++
T Consensus       109 ~~~Mp~~~-Ls~~ei~~l~ayl~~l~~  134 (146)
T 3o0r_C          109 RRAMPQFH-LSEGQVDDLAEFLKWSSK  134 (146)
T ss_dssp             SCCCCCCC-CCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCC-cCHHHHHHHHHHHHHhcc
Confidence            4 575334 689999999999998763

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*

Probab=99.72  E-value=1e-17  Score=93.62  Aligned_cols=70  Identities=23%  Similarity=0.402  Sum_probs=54.3

Q ss_pred             HHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCCCCC
Q 033769           14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPG   93 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~   93 (112)
                      +|+++|..+|+.||+.++.+  ..+|+|.++..+                    ++.++|..+++++..     .||. .
T Consensus         2 ~G~~l~~~~C~~CHg~~g~g--~~gP~L~~~~~~--------------------~~~~~l~~~i~~g~~-----~Mp~-~   53 (71)
T 1c75_A            2 DAEAVVQQKCISCHGGDLTG--ASAPAIDKAGAN--------------------YSEEEILDIILNGQG-----GMPG-G   53 (71)
T ss_dssp             CHHHHHHHHTHHHHCTTSSC--SSSCCCTTGGGT--------------------SCHHHHHHHHHHCBT-----TBCS-C
T ss_pred             cHHHHHHHHHHHHcCCCCCC--CCCCCCcccccc--------------------CCHHHHHHHHHhCCC-----CCCC-C
Confidence            69999998999999987643  357988865322                    267889999988763     3443 5


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 033769           94 LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        94 ~l~~~ei~~l~ayl~sl~  111 (112)
                      .+|++|+++|++||++++
T Consensus        54 ~ls~~ei~~l~~yl~~~~   71 (71)
T 1c75_A           54 IAKGAEAEAVAAWLAEKK   71 (71)
T ss_dssp             SSCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            678999999999999874

>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*

Probab=99.71  E-value=8.8e-18  Score=95.75  Aligned_cols=72  Identities=15%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             HHHHHHHhhCcccccccCCCCC-CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh---CC-CCCCCCCC
Q 033769           14 AGEKIFKTKCAQCHTVVKGAGH-KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL---NP-KKYIPGTK   88 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~~~~~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~-~~~~~~~~   88 (112)
                      +|+++|.. |+.||+.++.+.. ..+|.|.+.                        +.+++...|+   ++ +...++..
T Consensus         2 ~G~~ly~~-Ca~CHg~~g~g~~~~~~P~L~g~------------------------~~~~~~~~l~~~~~g~~~~~~~~~   56 (79)
T 1c53_A            2 DGAALYKS-CVGCHGADGSKQAMGVGHAVKGQ------------------------KADELFKKLKGYADGSYGGEKKAV   56 (79)
T ss_pred             cHHHHHHH-HHhccCCCCCCCCCCCCCcCCCC------------------------CHHHHHHHHHHHHcCCCCCCcccc
Confidence            69999997 9999999875543 567887753                        2334444443   33 22222345


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHhh
Q 033769           89 M-VFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        89 m-~~~~~l~~~ei~~l~ayl~sl  110 (112)
                      | +|...||++||++|++||++|
T Consensus        57 Mp~~~~~Ls~~ei~~l~~Yl~sl   79 (79)
T 1c53_A           57 MTNLVKRYSDEEMKAMADYMSKL   79 (79)
T ss_pred             hHHHHhhCCHHHHHHHHHHHHhC
Confidence            6 576778999999999999986

>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}

Probab=99.71  E-value=2.7e-18  Score=102.25  Aligned_cols=78  Identities=26%  Similarity=0.315  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHH----hCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYL----LNPKKYI   84 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~   84 (112)
                      .+++.+|+++|+ +|+.||+.++.+....+|+|.+.                        +.+++...|    .......
T Consensus        21 ~~~~~~G~~l~~-~C~~CHg~~g~g~~~~~p~L~g~------------------------~~~~~~~~l~~~~~g~~~~~   75 (103)
T 2zzs_A           21 AGDAAAGQAKAA-VCAACHGADGNATIPGYPNLKGQ------------------------NEQYIVSSIKAYKNKERSGG   75 (103)
T ss_dssp             -CCHHHHHHHTT-TTHHHHCTTSCCCSTTCCCCTTC------------------------CHHHHHHHHHHHHTTCBCST
T ss_pred             cCCHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCCCC------------------------CHHHHHHHHHHHHcCCCCCC
Confidence            688999999999 99999999876655678888753                        233344444    3222111


Q ss_pred             CCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           85 PGTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 ~~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +...| +|...+|++|+++|++||++++
T Consensus        76 ~~~~Mp~~~~~ls~~ei~~l~~yl~~l~  103 (103)
T 2zzs_A           76 LAAVMQAQASLLSDDDIANLAAYYSSLK  103 (103)
T ss_dssp             THHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred             cccchHHHHhhCCHHHHHHHHHHHHhCC
Confidence            11256 4767789999999999999874

>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*

Probab=99.70  E-value=5.8e-18  Score=96.85  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=56.6

Q ss_pred             HHHHHHH-hhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC-CCCCC-
Q 033769           14 AGEKIFK-TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP-GTKMV-   90 (112)
Q Consensus        14 ~G~~lf~-~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~m~-   90 (112)
                      +|++||. .+|+.||+.++.+   .+|.|.++..+..+.               .++.++|..+|+++..... ...|| 
T Consensus         2 ~G~~l~~~~~C~~CHg~~g~g---~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~   63 (82)
T 2exv_A            2 DPEVLAKNKGCVACHAIDTKM---VGPAYKDVAAKFAGQ---------------AGAEAELAQRIKNGSQGVWGPIPMPP   63 (82)
T ss_dssp             CHHHHHHHTTGGGTCCSSSCC---SSCCHHHHHHHHTTC---------------TTHHHHHHHHHHHCBSSSSSSSCBCC
T ss_pred             cHHHHHHhCCchhhcCCCCCC---CCcCHHHHHHHhcCC---------------cchHHHHHHHHHcCCCCCCCCCCCCC
Confidence            6999998 5799999987533   678887665433211               1247889999988865332 24564 


Q ss_pred             CCCCCCHHHHHHHHHHHHhhc
Q 033769           91 FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |  .+|++||++|++||++|+
T Consensus        64 ~--~ls~~ei~~l~~yl~~lk   82 (82)
T 2exv_A           64 N--AVSDDEAQTLAKWVLSQK   82 (82)
T ss_dssp             C--CCCHHHHHHHHHHHHTCC
T ss_pred             C--CCCHHHHHHHHHHHHhCC
Confidence            6  678999999999999874

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*

Probab=99.70  E-value=1.1e-16  Score=101.17  Aligned_cols=83  Identities=19%  Similarity=0.297  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      ..+++.+|++||..+|+.||+.++.+  ..+|.|.+...         .+.       ..++.+.|..+|.++.   ++.
T Consensus        42 ~~~~~~~G~~l~~~~Ca~CHg~~g~g--~~gP~L~~~~~---------~~~-------~~~~~~~l~~~i~~G~---~~~  100 (147)
T 2gc4_D           42 DPEILPEAEELYAGMCSGCHGHYAEG--KIGPGLNDAYW---------TYP-------GNETDVGLFSTLYGGA---TGQ  100 (147)
T ss_dssp             CTTTHHHHHHHHHHHTHHHHCTTSSC--SSSCCCSSSCC---------SSG-------GGGSHHHHHHHHHHCC---STT
T ss_pred             CHHHHHHHHHHHHhhcHHhCCCCCCC--CCCCCCCcccc---------ccc-------CcCCHHHHHHHHHcCC---CCC
Confidence            45678999999999999999987643  34788875311         110       0136788999998875   234


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |++|.+.+|++||++|++||+++.
T Consensus       101 Mp~~~~~ls~~ei~~l~~Yl~~l~  124 (147)
T 2gc4_D          101 MGPMWGSLTLDEMLRTMAWVRHLY  124 (147)
T ss_dssp             CCCCTTTSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhc
Confidence            446877789999999999999985

>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*

Probab=99.70  E-value=1.1e-17  Score=95.68  Aligned_cols=78  Identities=24%  Similarity=0.343  Sum_probs=57.8

Q ss_pred             HHHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-CCCC-
Q 033769           14 AGEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-TKMV-   90 (112)
Q Consensus        14 ~G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~-   90 (112)
                      +|++||.+ +|+.||+.++.   .++|.|.++..+..+..               .+.++|..+|+++.....+ ..|| 
T Consensus         2 ~G~~l~~~~~C~~CHg~~g~---g~gP~l~~~~~~~~~~~---------------~~~~~l~~~i~~g~~~~~~~~~Mp~   63 (82)
T 1cch_A            2 DGEALFKSKPCAACHSVDTK---MVGPALKEVAAKNAGVE---------------GAADTLALHIKNGSQGVWGPIPMPP   63 (82)
T ss_dssp             CSHHHHHHSTHHHHSCSSSC---SSSCCHHHHHHHSSSCG---------------GGHHHHHHHHHTCCCSSSSSCCCCC
T ss_pred             cHHHHHHhCCChhhcCCCCC---CCCcChHHHHHHcCCCc---------------hHHHHHHHHhhcCCCCCCCCCCCCC
Confidence            68999996 79999998753   36899987655443210               1367899999988654432 3464 


Q ss_pred             CCCCCCHHHHHHHHHHHHhhc
Q 033769           91 FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |  .+|++|+++|++||++|+
T Consensus        64 ~--~ls~~ei~~l~~yl~~l~   82 (82)
T 1cch_A           64 N--PVTEEEAKILAEWVLSLK   82 (82)
T ss_dssp             C--SCCHHHHHHHHHHHHHCC
T ss_pred             C--CCCHHHHHHHHHHHHhcC
Confidence            5  678999999999999974

>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*

Probab=99.70  E-value=1.7e-17  Score=95.41  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||..+|+.||+.++.+ ...+|.|....-..               . ...+.+.+..+++++..    .|+
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~~~~-~~~~p~l~~~~~~~---------------~-~~~~~~~~~~~i~~g~~----~Mp   60 (86)
T 3ph2_B            2 ADLATGAKVFSANCAACHAGGINL-VNAEKTLKKEALEK---------------F-GMNSIVAITTVVTNGKA----GMP   60 (86)
T ss_dssp             CCHHHHHHHHHHHTHHHHCSSSCT-TCSSSSCCHHHHHH---------------T-TCCSHHHHHHHHHHCBT----TBC
T ss_pred             ccHHHHHHHHHHHhHHhCCCCCCC-CCCCCccChhhHHh---------------c-cCCCHHHHHHHHHhCCC----CCC
Confidence            678999999999999999976432 34456665311000               0 01267788888887752    344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...+|++||++|++||++++
T Consensus        61 ~~~~~ls~~ei~~l~~yl~~~~   82 (86)
T 3ph2_B           61 AFKGRLTDDQIAAVAAYVLDQA   82 (86)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CcccCCCHHHHHHHHHHHHHhh
Confidence            6777789999999999999875

>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*

Probab=99.70  E-value=6.1e-17  Score=96.45  Aligned_cols=86  Identities=20%  Similarity=0.274  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC-
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT-   87 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-   87 (112)
                      ++++.+|++||..+|+.||+.++.+. ..+|.+.               .+.+...+. ++.+.|..+|+++...+|.. 
T Consensus         2 a~~~~~G~~l~~~~Ca~CHg~~g~g~-~~g~~~~---------------~p~l~~~~~-~~~~~l~~~i~~g~~~Mp~~~   64 (105)
T 2ce0_A            2 TLDIQRGATLFNRACAACHDTGGNII-QPGATLF---------------TKDLERNGV-DTEEEIYRVTYFGKGRMPGFG   64 (105)
T ss_dssp             -CCHHHHHHHHHHHTTTTSGGGCCSS-STTCCSS---------------HHHHHHTTC-CSHHHHHHHHHHCBTTBCBCB
T ss_pred             chhHHHHHHHHHHHHHHhCCCCCCcC-CCCcccC---------------CcchhhcCC-CCHHHHHHHHHhCcCCCCccc
Confidence            46889999999999999999986432 2233321               111111111 36788999998876544422 


Q ss_pred             -------CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 -------KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 -------~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                             |++|...||++||++|++||+++.
T Consensus        65 ~~~~~~~M~~~~~~ls~~ei~~l~~yl~~~~   95 (105)
T 2ce0_A           65 EKCTPRGQCTFGPRLQDEEIKLLAEFVKFQA   95 (105)
T ss_dssp             TTCCSGGGBCSSCCBCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCHHHHHHHHHHHHHhh
Confidence                   334666789999999999999874

>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*

Probab=99.70  E-value=3.3e-17  Score=93.72  Aligned_cols=73  Identities=22%  Similarity=0.376  Sum_probs=56.4

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++.+|++||..+|+.||+.++    ..+|.|.+.                      .++.++|..+|+++..    .|+
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~g----g~~P~L~~~----------------------~~~~~~l~~~i~~g~~----~Mp   51 (80)
T 1wve_C            2 SQWGSGKNLYDKVCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFR----AMP   51 (80)
T ss_dssp             CCSSSHHHHHHHTTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBT----TBC
T ss_pred             ccHHHHHHHHHHHHHHhCCCCC----CCCCCCCCC----------------------CCCHHHHHHHHHhCcC----CCC
Confidence            4667899999999999999762    268888641                      1267889999988753    344


Q ss_pred             CCC-CCCCHHHHHHHHHHHHhhcC
Q 033769           90 VFP-GLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        90 ~~~-~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +|. ..+|++|+++|++||+++++
T Consensus        52 ~~~~~~ls~~ei~~l~~yl~~~~~   75 (80)
T 1wve_C           52 AFPASYVDDESLTQVAEYLSSLPA   75 (80)
T ss_dssp             CCCTTTSCHHHHHHHHHHHHHSCC
T ss_pred             CCcccCCCHHHHHHHHHHHHHCcC
Confidence            674 56889999999999999863

>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}

Probab=99.70  E-value=1.8e-17  Score=95.49  Aligned_cols=82  Identities=24%  Similarity=0.384  Sum_probs=52.5

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      .+++.+|++||..+|+.||+.++.+.. .+|.|.               .+.+.... .++.+.|..+++++..    .|
T Consensus         2 ~g~~~~G~~ly~~~Ca~CHg~~g~g~~-~~~~l~---------------~p~l~~~~-~~~~~~l~~~i~~g~~----~M   60 (85)
T 3cu4_A            2 GGSGAGGGELFATHCAGCHPQGGNTVH-PEKTLA---------------RARREANG-IRTVRDVAAYIRNPGP----GM   60 (85)
T ss_dssp             -----CHHHHHHHHTTTTSGGGCCSSS-TTCCCC---------------HHHHHHTT-CCSHHHHHHHTTSCCT----TS
T ss_pred             CccHHHHHHHHHHHhHHhCCCCCCCCC-CCCCCC---------------chhhhhcC-CCCHHHHHHHHHcCCC----CC
Confidence            367889999999999999998753321 112221               11111111 2468889999988752    34


Q ss_pred             CCCCC-CCCHHHHHHHHHHHHhhc
Q 033769           89 MVFPG-LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        89 m~~~~-~l~~~ei~~l~ayl~sl~  111 (112)
                      ++|.. .||++||++|++||+++.
T Consensus        61 p~~~~~~ls~~ei~~l~~yi~~~~   84 (85)
T 3cu4_A           61 PAFGEAMIPPADALKIGEYVVASF   84 (85)
T ss_dssp             CCCCTTTSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC
Confidence            46876 789999999999999874

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1

Probab=99.70  E-value=4.1e-18  Score=106.55  Aligned_cols=88  Identities=24%  Similarity=0.277  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC--
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG--   86 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--   86 (112)
                      .+++++|++||.++|+.||+ .  +.+.+||.|. + +     .+.|.++.     ...|+.+.|..||++|....+.  
T Consensus        23 ~~d~~~G~~lf~~~Ca~CH~-~--g~~~~gP~L~-l-g-----~~~~~~s~-----~~~~~~~~L~~~l~~p~~~~~~~~   87 (135)
T 1e29_A           23 ARQFTNGQKIFVDTCTQCHL-Q--GKTKTNNNVS-L-G-----LADLAGAE-----PRRDNVLALVEFLKNPKSYDGEDD   87 (135)
T ss_dssp             HHHHHHHHHHHHHHTHHHHG-G--GCBSSSSSCS-S-S-----HHHHHTSS-----SCCSSHHHHHHHHHSCBCTTSCSB
T ss_pred             cccHHHHHHHHHhHHHHhcC-C--CCCCCCCCce-e-c-----cccccccc-----cccCCHHHHHHHHhChhhccCccc
Confidence            45678999999989999999 3  3456899987 3 2     12222221     1238999999999988654321  


Q ss_pred             -----------CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 -----------TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 -----------~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                 .+||....||++||++|++||.++.
T Consensus        88 ~~~~~p~~~~~~~mp~~~~Lsd~ei~~laaYl~~~~  123 (135)
T 1e29_A           88 YSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIAP  123 (135)
T ss_dssp             CTTTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhcccccccCCHHHHHHHHHHHHhcc
Confidence                       2344224578999999999998864

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}

Probab=99.70  E-value=6.5e-18  Score=103.60  Aligned_cols=80  Identities=25%  Similarity=0.473  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP--   85 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--   85 (112)
                      ..+++.+|++||..+|+.||+.++   ...||+|.++..+.                    +.++|..+|.++....+  
T Consensus        30 ~~~~~~~G~~l~~~~C~~CH~~~g---~~~gP~l~~~~~~~--------------------~~~~l~~~i~~~~~~~~~~   86 (124)
T 3cp5_A           30 DAALAQQGEQLFNTYCTACHRLDE---RFIGPALRDVTKRR--------------------GPVYIMNVMLNPNGMIQRH   86 (124)
T ss_dssp             CHHHHHHHHHHHHHHTTTTCCSSS---CSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHhhHHhCCCCC---CCCCCCcccccccc--------------------CHHHHHHHHhChHhhcccc
Confidence            345678999999999999999864   45689998764432                    46788888888764211  


Q ss_pred             ----------CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           86 ----------GTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        86 ----------~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                ++.||.. .+|++|+++|++||++++
T Consensus        87 ~~~~~~~~~~~~~Mp~~-~Ls~~ei~~l~~Yl~~l~  121 (124)
T 3cp5_A           87 PVMKQLVQEYGTMMTDM-ALSEEQARAILEYLRQVA  121 (124)
T ss_dssp             HHHHHHHHHHCSCCCCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhcCCCCCCCC-CCCHHHHHHHHHHHHHhC
Confidence                      2467643 568999999999999875

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1

Probab=99.69  E-value=2.2e-17  Score=101.80  Aligned_cols=87  Identities=21%  Similarity=0.290  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC------
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK------   82 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------   82 (112)
                      .+++++|++||..+|+.||+.++   ..++|.|.....            ......+..|+.++|..+|+++..      
T Consensus        21 ~~~~~~G~~lf~~~Ca~CHg~~g---~~~gP~l~~~~~------------~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~   85 (129)
T 1f1c_A           21 LKEIKKGQQVFNAACAQCHALGV---TRTNPDVNLSPE------------ALALATPPRDNIAALVDYIKNPTTYDGFVE   85 (129)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGC---CTTCSSSCSSHH------------HHHTSSSCCCSHHHHHHHHHSCBCTTSCSB
T ss_pred             cccHHHHHHHHHhhhHHhcCCCC---CCCCCCcccCHH------------HHHhcCCccchHHHHHHHHhCCcccccchh
Confidence            35678999999999999999753   346888753110            000111234678899999998753      


Q ss_pred             -------CCCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           83 -------YIPGTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        83 -------~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                             ..+...| +| ..+|++||++|++||+++.
T Consensus        86 ~~~~~~~~~~~~~Mp~~-~~Ls~~ei~~l~~Yl~~l~  121 (129)
T 1f1c_A           86 ISELHPSLKSSDIFPKM-RNISEDDLYNVAGYILLQP  121 (129)
T ss_dssp             CTTTSCSTTCTTTCGGG-SSCCHHHHHHHHHHHHHHH
T ss_pred             HhhhhhcccCCCCCCCC-CCCCHHHHHHHHHHHHHcC
Confidence                   1234556 47 6788999999999999875

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*

Probab=99.68  E-value=1.6e-16  Score=105.49  Aligned_cols=87  Identities=23%  Similarity=0.377  Sum_probs=65.6

Q ss_pred             CCCCCCHHHHHHHHHh----------------hCcccccccCCCC--CCCCCCCCCccC-CCCCCCCCCccchhccccce
Q 033769            6 EAPPGNPKAGEKIFKT----------------KCAQCHTVVKGAG--HKQGPNLNGLFG-RQSGTTPGYSYSAANKGMAV   66 (112)
Q Consensus         6 ~~~~~~~~~G~~lf~~----------------~C~~CH~~~~~~~--~~~gP~l~~~~~-~~~~~~~~~~~~~~~~~~~~   66 (112)
                      ....++.++|+.+|..                +|++||+.++.+.  +.+||+|.++.. +.                  
T Consensus        92 g~~~gd~~~Ge~lf~~G~g~~~~d~g~~ly~~~CaaCHg~dG~G~~~G~~GP~Lag~~~~r~------------------  153 (208)
T 3oa8_B           92 GPVLGSWKDGAKVAQNGRGGQFSDPPGTVSGGNCYACHQLDPKEVSYGTLGPSLVGYGRERN------------------  153 (208)
T ss_dssp             SCSCCCHHHHHHHHHCCCSSSTTSCTTCCCCCCGGGTCCCSTTCCCCCSSSCCCTTHHHHTT------------------
T ss_pred             CcCccCHHHHHHHHhccccccccchhhhhhcccchhhCCCCCcCCCCCCcCCCccccccccc------------------
Confidence            3456899999999986                7999999987652  467899998643 21                  


Q ss_pred             eeCHHHHH---HHHhCCCCCCCCCCCC-CC--CCCCHHHHHHHHHHHHhhc
Q 033769           67 IWEEKTLY---DYLLNPKKYIPGTKMV-FP--GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        67 ~~~~~~l~---~~l~~~~~~~~~~~m~-~~--~~l~~~ei~~l~ayl~sl~  111 (112)
                       ++.+.|.   .+|.++....+++.|| |.  +.||++||++|++||+++.
T Consensus       154 -~~~~~L~~~~~~I~~~~~~~p~~~MP~fa~~g~LSdeEIaaLaaYL~s~~  203 (208)
T 3oa8_B          154 -FSAEDAKIAFAKVYDAQASLACSSMPRFGVNGVLTEQQIKDVVAYLFDPE  203 (208)
T ss_dssp             -TCHHHHHHHHHHHHCGGGTSTTCSSCCTTTTTSSCHHHHHHHHHHHHCTT
T ss_pred             -CCHHHHHHHHHHhhCccCCCCCCCCCcccccCCCCHHHHHHHHHHHHccC
Confidence             1445554   6677776666777774 76  5689999999999999875

>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*

Probab=99.68  E-value=1.4e-17  Score=95.66  Aligned_cols=81  Identities=21%  Similarity=0.264  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++.+|++||..+|+.||+.++.+   .+|.+..+             .+.+... ..++.+.|..+++++.    ..|+
T Consensus         1 ~~~~~G~~l~~~~C~~CHg~~g~g---~~~~~~~~-------------~~~l~~~-~~~~~~~l~~~i~~g~----~~Mp   59 (85)
T 1gdv_A            1 ADLDNGEKVFSANCAACHAGGNNA---IMPDKTLK-------------KDVLEAN-SMNTIDAITYQVQNGK----NAMP   59 (85)
T ss_dssp             CHHHHHHHHHHHHTHHHHGGGCCS---SSTTSCCC-------------HHHHHHT-TCCSHHHHHHHHHHCB----TTBC
T ss_pred             CcHHHHHHHHHHhhHhhCCCCcCC---CCCCCCCC-------------cHHHHHc-cCCCHHHHHHHHHhCc----CCCC
Confidence            357899999999999999987543   23322111             1111111 1236788999998775    2333


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...+|++||++|++||+++.
T Consensus        60 ~~~~~ls~~ei~~l~~yl~~~~   81 (85)
T 1gdv_A           60 AFGGRLVDEDIEDAANYVLSQS   81 (85)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh
Confidence            5776789999999999999875

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1

Probab=99.68  E-value=3.6e-17  Score=94.53  Aligned_cols=83  Identities=25%  Similarity=0.324  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||..+|+.||+.++   ..++|.+.......    ..|...        ..+.+.|...++++..    .|+
T Consensus         1 gd~~~G~~l~~~~C~~CHg~~g---~~~~p~~~~~~~~~----~~~l~~--------~~~~~~l~~~i~~g~~----~Mp   61 (88)
T 3dmi_A            1 GDVGAGEQIFNANCAACHAGGQ---NVIMPEKTLEKEAL----DQYLAG--------GRTEKSIISQVTGGKN----AMP   61 (88)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGC---CSSSTTSCSSHHHH----HHHSTT--------CSSHHHHHHHHHHCBT----TBC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCC---CCcCCCCCCCHHHH----HHHHhc--------CCCHHHHHHHHHcCcC----CCC
Confidence            4788999999999999999653   34566554321100    000000        0156788888887752    344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...+|++||++|++||+++.
T Consensus        62 ~~~~~ls~~ei~~l~~yl~~~~   83 (88)
T 3dmi_A           62 AFGGRLSDEEIANVAAYVLASA   83 (88)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHh
Confidence            6777789999999999999874

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*

Probab=99.67  E-value=5.8e-17  Score=93.81  Aligned_cols=83  Identities=22%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCcc--CCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLF--GRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      +++++|++||..+|+.||+.++.+ ...+|.|....  .+.    ..+.          ..+.+.|..++.++..    .
T Consensus         1 g~~~~G~~l~~~~C~~CHg~~g~g-~~~~P~L~~~~~~~~l----~~~~----------~~~~~~l~~~i~~g~~----~   61 (89)
T 1f1f_A            1 GDVAAGASVFSANCAACHMGGRNV-IVANKTLSKSDLAKYL----KGFD----------DDAVAAVAYQVTNGKN----A   61 (89)
T ss_dssp             -CHHHHHHHHHHHTHHHHGGGCCS-SSTTCCSSHHHHHHHS----TTTT----------TCHHHHHHHHHHHCBT----T
T ss_pred             CcHHHHHHHHHHHhHHhCCCCCCC-CcCCCCCCHHHHHHHh----hccC----------ccCHHHHHHHHHcCCC----C
Confidence            468899999999999999998644 34578885310  000    0000          0126778888877642    2


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |++|...+|++||++|++||+++.
T Consensus        62 Mp~~~~~ls~~ei~~l~~yl~~~~   85 (89)
T 1f1f_A           62 MPGFNGRLSPLQIEDVAAYVVDQA   85 (89)
T ss_dssp             BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCccccCCCHHHHHHHHHHHHHHh
Confidence            336777789999999999999875

>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}

Probab=99.67  E-value=3.8e-17  Score=92.96  Aligned_cols=76  Identities=14%  Similarity=0.214  Sum_probs=54.5

Q ss_pred             HHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-CCCCCC-CC
Q 033769           15 GEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-IPGTKM-VF   91 (112)
Q Consensus        15 G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~m-~~   91 (112)
                      |++||.. +|+.||+.++.   .+||+|.++..+....                 +.++|..+|+++... .+...| +|
T Consensus         1 ~~~l~~~~~C~~CHg~~g~---~~gP~l~~~~~~~~~~-----------------~~~~l~~~i~~g~~~~~~~~~Mp~~   60 (79)
T 2d0s_A            1 DEALAKAKGCMACHAIDKK---LVGPSYKDVAKKYTEA-----------------DVPKLVEKVKKGGAGVWGPVPMPPH   60 (79)
T ss_dssp             CHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHCCGG-----------------GHHHHHHHHHHCBCSSSCSSCBCCC
T ss_pred             CHhHHhcCCChhhcCCCCC---CCCCCHHHHHHHHccc-----------------cHHHHHHHHhcCCCCCCCCCCCCCC
Confidence            6789974 79999998753   3689888754433110                 356899899888542 233446 46


Q ss_pred             CCCCCHHHHHHHHHHHHhhc
Q 033769           92 PGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        92 ~~~l~~~ei~~l~ayl~sl~  111 (112)
                       ..||++||++|++||++|+
T Consensus        61 -~~Ls~~ei~~l~~yl~~lk   79 (79)
T 2d0s_A           61 -PQVAEADIEKIVRWVLTLK   79 (79)
T ss_dssp             -TTSCHHHHHHHHHHHTTCC
T ss_pred             -CCCCHHHHHHHHHHHHhCc
Confidence             4678999999999999874

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}

Probab=99.67  E-value=7.8e-17  Score=93.74  Aligned_cols=85  Identities=21%  Similarity=0.288  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCcc--CCCCCCCCCCccchhccccceeeCH-HHHHHHHhCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLF--GRQSGTTPGYSYSAANKGMAVIWEE-KTLYDYLLNPKKYIPG   86 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~   86 (112)
                      +++++|++||..+|+.||+.++.+. ...|.+....  .........            ..+. +.|..+++++..    
T Consensus         1 ~d~~~G~~l~~~~C~~CHg~~g~g~-~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~i~~g~~----   63 (93)
T 3dr0_A            1 ADAAAGAQVFAANCAACHAGGNNAV-MPTKTLKADALKTYLAGYKDG------------SKSLEEAVAYQVTNGQG----   63 (93)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHHHHHHHSTTTTTT------------SSCHHHHHHHHHHHCBT----
T ss_pred             CcHHHHHHHHHHHhHHhcCCCCCCC-CCCcccCcchHHHHHhhcccc------------cccHHHHHHHHHHcCCC----
Confidence            4789999999999999999875332 2223332100  000000000            0134 778888887752    


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .|++|...+|++||++|++||+++.
T Consensus        64 ~Mp~~~~~ls~~ei~~l~~yl~~l~   88 (93)
T 3dr0_A           64 AMPAFGGRLSDADIANVAAYIADQA   88 (93)
T ss_dssp             TBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3346767789999999999999875

>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*

Probab=99.66  E-value=1.8e-17  Score=94.74  Aligned_cols=78  Identities=15%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             HHHHHH-hhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC-CCCCC-CC
Q 033769           15 GEKIFK-TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI-PGTKM-VF   91 (112)
Q Consensus        15 G~~lf~-~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~m-~~   91 (112)
                      |++||. .+|+.||+.++.   .++|.|.++..+..+.               ..+.++|..+|+++.... +...| +|
T Consensus         1 ~~~l~~~~~C~~CHg~~g~---~~gp~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~   62 (81)
T 1a56_A            1 DADLAKKNNCIACHQVETK---VVGPALKDIAAKYADK---------------DDAATYLAGKIKGGSSGVWGQIPMPPN   62 (81)
T ss_dssp             CHHHHHHHSHHHHBCSSCB---SSSCCHHHHHHHHTTS---------------SSHHHHHHHHHHHCBSSSSSSCCBCSC
T ss_pred             CHhHHhccCchhhCCCCCC---cCCcCHHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            578998 579999998753   4678887765332211               013678999998876543 22456 57


Q ss_pred             CCCCCHHHHHHHHHHHHhhc
Q 033769           92 PGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        92 ~~~l~~~ei~~l~ayl~sl~  111 (112)
                       ..||++||++|++||++|+
T Consensus        63 -~~Ls~~ei~~l~~yl~~lk   81 (81)
T 1a56_A           63 -VNVSDADAKALADWILTLK   81 (81)
T ss_dssp             -CSSSSHHHHHHHHHHHHHC
T ss_pred             -CCCCHHHHHHHHHHHHhCC
Confidence             6778999999999999874

>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*

Probab=99.66  E-value=2.3e-16  Score=91.30  Aligned_cols=82  Identities=18%  Similarity=0.274  Sum_probs=54.5

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhcccc-ceeeCHHHHHHHHhCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGM-AVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      +++++|++||..+|+.||+.++.+. ...|.|...               .+... .-.++.+.|..+++++.    ..|
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~~g~~~-~~~~~l~~~---------------~~~~~~~~~~~~~~l~~~i~~g~----~~M   61 (89)
T 1c6r_A            2 ADLALGKQTFEANCAACHAGGNNSV-IPDHTLRKA---------------AMEQFLQGGFNLEAITYQVENGK----GAM   61 (89)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHH---------------HHHHHSTTCSSHHHHHHHHHHCB----TTB
T ss_pred             ccHHHHHHHHHHHHHHHcCCCCCCC-CCCcCcCch---------------hHHHHhcCCCCHHHHHHHHHcCC----CCC
Confidence            5789999999999999999865321 112333210               00000 00125778888888774    233


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhc
Q 033769           89 MVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        89 m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ++|...+|++||++|++||+++.
T Consensus        62 p~~~~~ls~~ei~~l~~yl~~~~   84 (89)
T 1c6r_A           62 PAWSGTLDDDEIAAVAAYVYDQA   84 (89)
T ss_dssp             CCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHHc
Confidence            46777789999999999999875

>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=99.66  E-value=5.4e-16  Score=100.51  Aligned_cols=81  Identities=22%  Similarity=0.397  Sum_probs=60.4

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++.+|++||..+|+.||+.++.+  ..+|+|.+..-         .+       +..++.+.|..+|+++..   +.|+
T Consensus        52 ~~~~~G~~lf~~~Ca~CHg~~g~G--~~gP~L~~~~~---------~~-------~~~~~~~~l~~~i~~G~~---g~MP  110 (172)
T 2c8s_A           52 SCLRNGESLFATSCSGCHGHLAEG--KLGPGLNDNYW---------TY-------PSNTTDVGLFATIFGGAN---GMMG  110 (172)
T ss_dssp             HHHHHHHHHHHHHTHHHHCTTSSC--SSSCCSSSSCC---------SS-------GGGGSHHHHHHHHHTCTT---SSSC
T ss_pred             HHHHHHHHHHHhhhHHhCCCCCCC--CCCCCCccccc---------cc-------cccCCHHHHHHHHHhCCC---CCCC
Confidence            456899999999999999997644  34798875311         11       112367889999998852   3344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...||++||++|++||+++.
T Consensus       111 ~~~~~Lsd~ei~~laaYl~sl~  132 (172)
T 2c8s_A          111 PHNENLTPDEMLQTIAWIRHLY  132 (172)
T ss_dssp             SCCCCSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhc
Confidence            6877889999999999999986

>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}

Probab=99.66  E-value=3.9e-16  Score=100.93  Aligned_cols=82  Identities=22%  Similarity=0.363  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      .++..+|++||..+|+.||+.++.+  ..+|.|.+....+         .       ..++.++|..+|+++..   +.|
T Consensus        45 ~~~~~~G~~lf~~~Ca~CHg~~g~G--~~gP~L~~~~~~~---------~-------~~~~~~~l~~~i~~G~~---~~M  103 (170)
T 2d0w_A           45 AGCLPKGEEIYLESCSGCHGHIGEG--KVGPGLNDSYWTY---------P-------KNTTDKGLFETIFGGAN---GMM  103 (170)
T ss_dssp             GGGHHHHHHHHHHHTHHHHCTTSCC--SSSCCSSSSCCSS---------G-------GGGSHHHHHHHHHHCCS---TTC
T ss_pred             HHHHHHHHHHHHhhhHHhCCCCCCC--CCCCCCccchhhc---------c-------ccCCHHHHHHHHHcCCC---CCC
Confidence            4567899999999999999997643  3579887642111         0       12367889999988752   233


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhc
Q 033769           89 MVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        89 m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ++|...||++||++|++||+++.
T Consensus       104 p~~~~~Ls~~ei~~l~aYl~sl~  126 (170)
T 2d0w_A          104 GPHGQDLELDNMLKLIAWIRHIQ  126 (170)
T ss_dssp             CCCTTTSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcc
Confidence            46877889999999999999986

>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}

Probab=99.65  E-value=4.3e-17  Score=93.83  Aligned_cols=77  Identities=21%  Similarity=0.336  Sum_probs=54.8

Q ss_pred             HHHHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC----CCC
Q 033769           14 AGEKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP----GTK   88 (112)
Q Consensus        14 ~G~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~   88 (112)
                      +|++||.+ +|+.||+.++.   ..+|.|..+..+..+                  +.++|..|+..+.....    ...
T Consensus         2 ~G~~l~~~~~C~~CHg~~g~---g~gp~l~~l~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~~~~   60 (87)
T 2zxy_A            2 DGKAIFQQKGCGSCHQANVD---TVGPSLKKIAQAYAG------------------KEDQLIKFLKGEAPAIVDPAKEAI   60 (87)
T ss_dssp             CHHHHHHHTTGGGTCCSSSC---SSSCCHHHHHHHTTT------------------CHHHHHHHHTTCSCCSSCGGGHHH
T ss_pred             ChHHHHhcCCchhhcCCCCC---CCCCChHHHHHHhcC------------------CHHHHHHHHhcccccccCCCCCCC
Confidence            69999998 79999998753   357887765443311                  35678888877654322    134


Q ss_pred             C-CC---CCCCCHHHHHHHHHHHHhhc
Q 033769           89 M-VF---PGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        89 m-~~---~~~l~~~ei~~l~ayl~sl~  111 (112)
                      | +|   ...+|++||++|++||++|+
T Consensus        61 Mp~~~~~~~~ls~~ei~~l~~yl~sl~   87 (87)
T 2zxy_A           61 MKPQLTMLKGLSDAELKALADFILSHK   87 (87)
T ss_dssp             HGGGGGGGGGCCHHHHHHHHHHHHTC-
T ss_pred             CCCccccccCCCHHHHHHHHHHHHhcC
Confidence            5 56   45678999999999999874

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*

Probab=99.65  E-value=4.8e-16  Score=90.19  Aligned_cols=82  Identities=16%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccc-cceeeCHHHHHHHHhCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKG-MAVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      +++++|++||..+|+.||+.++.+. ..+|.|..               ..+.. ..-.++.+.|..+++++.    +.|
T Consensus         1 ~~~~~G~~l~~~~C~~CHg~~g~g~-~~~~~l~~---------------~~~~~~~~~~~~~~~l~~~i~~g~----~~M   60 (90)
T 1cyi_A            1 ADLALGAQVFNGNCAACHMGGRNSV-MPEKTLDK---------------AALEQYLDGGFKVESIIYQVENGK----GAM   60 (90)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSH---------------HHHHHHSTTCSSHHHHHHHHHHCB----TTB
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCC-CCCCCCCh---------------HHHHHHhcCCCCHHHHHHHHhcCC----CCC
Confidence            4688999999989999999875332 12233321               00000 000135778888888774    233


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhhc
Q 033769           89 MVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        89 m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ++|...+|++||++|++||+++.
T Consensus        61 p~~~~~ls~~ei~~l~~yl~~~~   83 (90)
T 1cyi_A           61 PAWADRLSEEEIQAVAEYVFKQA   83 (90)
T ss_dssp             CCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHhcc
Confidence            36777789999999999999875

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1

Probab=99.64  E-value=2.5e-16  Score=91.63  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=55.5

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCc--cCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGL--FGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      +++++|++||..+|+.||+.++.+ ...+|.|...  ..+..               + .++.+.|..+|+++.    +.
T Consensus         4 ~~~~~G~~l~~~~C~~CHg~~g~g-~~~~p~l~~~~~~~~~~---------------~-~~~~~~l~~~i~~g~----~~   62 (91)
T 1ls9_A            4 ELLADGKKVFAGNCAACHLGGNNS-VLADKTLKKDAIEKYLE---------------G-GLTLEAIKYQVNNGK----GA   62 (91)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCS-SSTTSCSSHHHHHHHST---------------T-CSCHHHHHHHHHHCB----TT
T ss_pred             HHHHHHHHHHHHHhHHhCCCCCCC-CCCCCCCCchhHHHhcc---------------C-CCCHHHHHHHHHcCc----CC
Confidence            457899999999999999986533 2234555421  00000               0 125778889988774    23


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |++|...||++||++|++||+++.
T Consensus        63 Mp~~~~~ls~~ei~~l~~yl~~~~   86 (91)
T 1ls9_A           63 MPAWADRLDEDDIEAVSNYVYDQA   86 (91)
T ss_dssp             BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CcchhhhCCHHHHHHHHHHHHHhc
Confidence            446777789999999999999875

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0

Probab=99.63  E-value=2.5e-16  Score=93.51  Aligned_cols=82  Identities=21%  Similarity=0.321  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      .+.+..+|++||..+|+.||+.++.   ..+|....             ...++...+. .+.+.|...|+++..    .
T Consensus        15 ~~~~~~~G~~ly~~~Ca~CHg~~g~---~~~p~~~~-------------~~~~l~~~~~-~~~~~l~~~i~~G~~----~   73 (99)
T 3dp5_A           15 TAVPNSGGGELFATHCAGCHPQGGN---TVHPEKTL-------------ARARREANGI-RTVRDVAAYIRNPGP----G   73 (99)
T ss_dssp             GCCCCCCHHHHHHHHTTTTSGGGCC---SSSTTCCC-------------CHHHHHHTTC-CSHHHHHHHTTSCCT----T
T ss_pred             CcccHHHHHHHHHHHHHHhCCCCCC---CCCCCCcc-------------ChHHHHhcCc-cCHHHHHHHHHcCCC----C
Confidence            3456789999999999999998652   23341110             0111111111 267789999988842    3


Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHhh
Q 033769           88 KMVFPG-LKKPQDRADLIAYLKES  110 (112)
Q Consensus        88 ~m~~~~-~l~~~ei~~l~ayl~sl  110 (112)
                      |++|.. .||++||++|++||++.
T Consensus        74 MP~~~~~~Lsd~ei~~l~~Yi~~~   97 (99)
T 3dp5_A           74 MPAFGEAMIPPADALKIGEYVVAS   97 (99)
T ss_dssp             SCCCCTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHh
Confidence            446876 78999999999999863

>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*

Probab=99.63  E-value=1e-16  Score=91.47  Aligned_cols=76  Identities=16%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             HHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-CCCCCCCC
Q 033769           17 KIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-TKMVFPGL   94 (112)
Q Consensus        17 ~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~~~~~   94 (112)
                      +||.. +|+.||+.++.   .++|.|.++..+....               .++.++|..+|+++....++ ..||.. .
T Consensus         3 ~l~~~~~C~~CHg~~g~---g~gP~l~~~~~~~~~~---------------~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~   63 (80)
T 1ayg_A            3 QLAKQKGCMACHDLKAK---KVGPAYADVAKKYAGR---------------KDAVDYLAGKIKKGGSGVWGSVPMPPQ-N   63 (80)
T ss_dssp             TTTTSSSSGGGCCSSCC---SSSCCHHHHHHHCSSC---------------TTHHHHHHHHHHSCBCSSSCSCCBCCC-C
T ss_pred             hhHhhCCchhhcCCCCC---CCCCChHHHHHHhcCC---------------ccHHHHHHHHHHcCCCCCCCCCCCCCC-C
Confidence            57764 69999998753   3789988765443211               12568899999998765433 336433 6


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 033769           95 KKPQDRADLIAYLKEST  111 (112)
Q Consensus        95 l~~~ei~~l~ayl~sl~  111 (112)
                      +|++||++|++||++++
T Consensus        64 Lsd~ei~~l~~yl~~lk   80 (80)
T 1ayg_A           64 VTDAEAKQLAQWILSIK   80 (80)
T ss_dssp             CCHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            78999999999999874

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}

Probab=99.63  E-value=5.8e-17  Score=93.72  Aligned_cols=83  Identities=18%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ...+++.+|++||..+|+.||+.++.+. ...|+|.+.             ...     +..+.+.+...++++..    
T Consensus         4 ~~~~~~~~G~~l~~~~C~~CHg~~~~g~-~~~~~l~~~-------------~~~-----~~~~~~~~~~~i~~G~~----   60 (87)
T 2zon_G            4 APAQLDPAGEKLYRSACVVCHASGVANA-PKLGDKQAW-------------APF-----LAQGADALLATVLKGKG----   60 (87)
T ss_dssp             ---CCCHHHHHHHHHTTHHHHTTTGGGC-CCTTCHHHH-------------HHH-----HHHCHHHHHHHHHHCBT----
T ss_pred             cchhhhhHHHHHHHHHhHHHcCCCCCCC-CCCCCHHHH-------------HHH-----HhcCHHHHHHHHHcCcC----
Confidence            3457788999999999999999875332 112333221             000     00135667777776652    


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHhhcC
Q 033769           87 TKMVFPG-LKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        87 ~~m~~~~-~l~~~ei~~l~ayl~sl~~  112 (112)
                      .|++|.. .+|++||++|++||+++++
T Consensus        61 ~Mp~~~~~~ls~~ei~~l~~yl~~~~~   87 (87)
T 2zon_G           61 AMPPRGGTAADEATLRAAVAYMMDAAR   87 (87)
T ss_dssp             TBCGGGGCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            3335765 7889999999999999875

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.60  E-value=2.6e-15  Score=105.22  Aligned_cols=84  Identities=19%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCC-CCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQ-GPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~-gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      .++.++|+++|..+|+.||+.++.+.... +|+|.+......+                 .+.++|.+.|+++..   +.
T Consensus       219 ~~~~~~G~~lf~~~Ca~CHg~~g~G~~~~~~P~L~~~~~~~~~-----------------~~~~~l~~~i~~g~~---g~  278 (311)
T 3mk7_C          219 DADLSAGKNVYAQTCAVCHGQGGEGMAALGAPKLNSAAGWIYG-----------------SSLGQLQQTIRHGRN---GQ  278 (311)
T ss_dssp             CCCHHHHHHHHHHTTHHHHCTTSCCBTTTTBCCSSCGGGCSSC-----------------CSHHHHHHHHHHCBC---CE
T ss_pred             cccchhhHHHHhhhHHhcCCCCCCCCcccCCCCCCcchhhhcc-----------------CCHHHHHHHHHhCcc---cc
Confidence            37789999999999999999987654443 7988861111111                 157789999987742   33


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           88 KMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      |++|...||++||++|++||++|+.
T Consensus       279 MP~~~~~Ls~~ei~~laaYl~sl~~  303 (311)
T 3mk7_C          279 MPAQQQYLGDDKVHLLAAYVYSLSQ  303 (311)
T ss_dssp             ECCCTTTTHHHHHHHHHHHHHHHCC
T ss_pred             CcccccCCCHHHHHHHHHHHHHcCC
Confidence            4467778899999999999999863

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}

Probab=99.34  E-value=2.1e-16  Score=111.88  Aligned_cols=87  Identities=28%  Similarity=0.430  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhCcccccccCCCC-CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC-
Q 033769           13 KAGEKIFKTKCAQCHTVVKGAG-HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV-   90 (112)
Q Consensus        13 ~~G~~lf~~~C~~CH~~~~~~~-~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~-   90 (112)
                      ++|+++|+++|++||+.++.+. ...+|+|.++..+....           .....++.++|..+|+++....+++.|| 
T Consensus       237 ~~G~~lf~~~Ca~CHg~~g~G~~~~~gP~L~gi~~r~~~~-----------~G~~~~~~~~L~~~I~~g~~~~~~~~MP~  305 (337)
T 2yev_B          237 ERGQQVFQQNCAACHGVARSMPPAVIGPELGLWGNRTSLG-----------AGIVENTPENLKAWIRDPAGMKPGVKMPG  305 (337)
Confidence            7999999999999999987542 35799999865543211           0001247889999999998777777785 


Q ss_pred             CCCCCCHHHHHHHHHHHHhhc
Q 033769           91 FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      | ..+|++|+++|++||++|+
T Consensus       306 ~-~~LsdeEi~aL~aYL~sL~  325 (337)
T 2yev_B          306 F-PQLSEEDLDALVRYLEGLK  325 (337)
Confidence            7 6678999999999999986

>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*

Probab=99.56  E-value=6.9e-16  Score=95.76  Aligned_cols=81  Identities=21%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             HHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-------CCC
Q 033769           14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-------IPG   86 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~   86 (112)
                      +|++||.. |+.||+.++.+....+|+|.+.......               ...+.++|...|.++...       .+.
T Consensus         3 ~G~~ly~~-Ca~CHg~~g~G~~~~~P~L~~~~~~~~~---------------~~~~~~~l~~~i~~g~~g~~~~~g~~~~   66 (131)
T 1c52_A            3 DGAKIYAQ-CAGCHQQNGQGIPGAFPPLAGHVAEILA---------------KEGGREYLILVLLYGLQGQIEVKGMKYN   66 (131)
T ss_dssp             CHHHHTHH-HHHHHCTTSCCBTTTBCCCTTHHHHHHT---------------STTHHHHHHHHHHHCEEEEEEETTEEEE
T ss_pred             cHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCcccccc---------------ccCCHHHHHHHHHhcccccccccCCccC
Confidence            69999999 9999999876654567888764210000               001567888888877431       112


Q ss_pred             CCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ..| +|. .||++||++|++||+++.
T Consensus        67 ~~MP~~~-~Lsd~ei~~l~~Yl~~~~   91 (131)
T 1c52_A           67 GVMSSFA-QLKDEEIAAVLNHIATAW   91 (131)
T ss_dssp             EEECCCT-TSCHHHHHHHHHHHHHTT
T ss_pred             CCCCCcc-cCCHHHHHHHHHHHHHHc
Confidence            445 576 788999999999999874

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1

Probab=99.56  E-value=1.1e-15  Score=97.99  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC------
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK------   82 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------   82 (112)
                      .+++++|++||..+|+.||+.++.+   .+|.+........+..+.            ..+.++|..+++++..      
T Consensus        49 ~~~~~~G~~lf~~~Ca~CHg~~g~g---~~p~~~l~~~~l~g~~p~------------~~~~~~l~~~l~~~~~~~g~~~  113 (163)
T 1w5c_T           49 EKQYLEGKRLFQYACASCHVGGITK---TNPSLDLRTETLALATPP------------RDNIEGLVDYMKNPTTYDGEQE  113 (163)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCS---SSTTSCCCHHHHHTSSSC------------CSSHHHHHHHHHSCBCTTSSSB
T ss_pred             HHHHHHHHHHHHHhhHHhCCCCCCC---CCCCcCCCchhhccCCCC------------cccHHHHHHHHhCccccccchh
Confidence            3457899999999999999976533   233221000000000000            1146789999988643      


Q ss_pred             -------CCCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           83 -------YIPGTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        83 -------~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                             ......| +| ..|||+||++|++||++++
T Consensus       114 ~~~~~~~~~~~~~Mp~~-~~Lsd~ei~~laaYl~sl~  149 (163)
T 1w5c_T          114 IAEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVEP  149 (163)
T ss_dssp             CTTTSCCSTTTTTSGGG-TTCCHHHHHHHHHHHHHHH
T ss_pred             hhhccccccccCcCCCC-CCCCHHHHHHHHHHHHHcc
Confidence                   1112356 47 5688999999999999875

>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*

Probab=99.55  E-value=1.1e-15  Score=87.55  Aligned_cols=78  Identities=12%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV   90 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~   90 (112)
                      ++..|++||..+|+.||+.++.+    +|.+..+..+.          +.+.     .+.+.|...++++..    .|++
T Consensus         2 ~~~~G~~ly~~~Ca~CHg~~~~g----~p~~~~~~~~~----------~~l~-----~~~~~l~~~i~~G~~----~Mp~   58 (81)
T 1kx2_A            2 DLQDAEAIYNKACTVCHSMGVAG----APKSHNTADWE----------PRLA-----KGVDNLVKSVKTGLN----AMPP   58 (81)
T ss_dssp             CCSCHHHHHHHSTTSSTTTTGGG----CCCTTCSTTTH----------HHHT-----TCSTTHHHHHHHTCT----TSCG
T ss_pred             ccccHHHHHHHHHHHHcCCCCCC----CCCCCChhhhh----------hhhh-----cCHHHHHHHHHhCcC----CCCC
Confidence            34579999999999999975422    45554321110          0000     023456666666653    2335


Q ss_pred             CCC--CCCHHHHHHHHHHHHhhc
Q 033769           91 FPG--LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        91 ~~~--~l~~~ei~~l~ayl~sl~  111 (112)
                      |..  .|||+||++|++||++++
T Consensus        59 ~~~~~~Lsd~ei~~l~~Yi~~~~   81 (81)
T 1kx2_A           59 GGMCTDCTDEDYKAAIEFMSKAK   81 (81)
T ss_dssp             GGGCSSCCHHHHHHHHHHHTSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcC
Confidence            643  688999999999999863

>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1

Probab=99.55  E-value=2.4e-15  Score=85.50  Aligned_cols=73  Identities=23%  Similarity=0.366  Sum_probs=50.9

Q ss_pred             HHHHHHHh----hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           14 AGEKIFKT----KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        14 ~G~~lf~~----~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      .|++||.+    +|+.||+.++.+    +|.|.....+..              .  ..+.+.+...++++.    +.|+
T Consensus         1 ~G~~ly~~g~~~~C~~CHg~~g~g----~P~l~~~~~~~~--------------~--~~~~~~l~~~i~~G~----~~Mp   56 (78)
T 1gks_A            1 DGESIYINGTAPTCSSCHDRGVAG----APELNAPEDWAD--------------R--PSSVDELVESTLAGK----GAMP   56 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTTGGG----CCCTTCHHHHHT--------------S--CCCHHHHHHHHHHCB----TTBC
T ss_pred             CHHHHHhhccccchhhhCCCCCCC----CCCCCCHHHhhh--------------c--cCCHHHHHHHHHcCC----CCCC
Confidence            48999997    899999987532    577754211000              0  014677888888774    2344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhh
Q 033769           90 VFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl  110 (112)
                      +|...||++||++|++||+++
T Consensus        57 ~~~~~Lsd~ei~~l~~yi~~~   77 (78)
T 1gks_A           57 AYDGRADREDLVKAIEYMLST   77 (78)
T ss_dssp             CCBTTBCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHhh
Confidence            687778999999999999874

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*

Probab=99.54  E-value=2.2e-15  Score=93.96  Aligned_cols=85  Identities=19%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCC--CccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLN--GLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY---   83 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---   83 (112)
                      .+++++|++||..+|+.||+.++.+... +|.+.  .+.+..    +            ..++.++|..+|++|...   
T Consensus        23 ~~~~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~l~~~~l~~~~----p------------~~~~~~~l~~~l~~p~~~~~~   85 (137)
T 1mz4_A           23 EKQYLEGKRLFQYACASCHVGGITKTNP-SLDLRTETLALAT----P------------PRDNIEGLVDYMKNPTTYDGE   85 (137)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCTTCG-GGCCCHHHHHTSS----S------------CCSSHHHHHHHHHSCBCTTSS
T ss_pred             hHHHHHHHHHHHhhhHHhcCCCCCCCCC-CccccccccccCC----C------------chhHHHHHHHHHhCchhhccc
Confidence            3467899999999999999987533211 12111  111100    0            012467899999885321   


Q ss_pred             ----------CCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           84 ----------IPGTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        84 ----------~~~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                .+...| +| ..||++||++|++||+++.
T Consensus        86 ~~~~~~~~~~~~~~~MP~~-~~Lsd~ei~alaaYl~~~~  123 (137)
T 1mz4_A           86 QEIAEVHPSLRSADIFPKM-RNLTEKDLVAIAGHILVEP  123 (137)
T ss_dssp             SBCTTTSCCGGGTTTSGGG-TTCCHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccCCCCCCC-CCCCHHHHHHHHHHHHHcc
Confidence                      123456 57 4478999999999999874

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=99.53  E-value=3.6e-15  Score=97.19  Aligned_cols=82  Identities=23%  Similarity=0.323  Sum_probs=56.7

Q ss_pred             CCHHHHHHHHHh--------hCcccccccCCCCCC-CCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCC
Q 033769           10 GNPKAGEKIFKT--------KCAQCHTVVKGAGHK-QGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNP   80 (112)
Q Consensus        10 ~~~~~G~~lf~~--------~C~~CH~~~~~~~~~-~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~   80 (112)
                      +++.+|++||..        +|+.||+.++.+... .+|.|.+...                    .|..+.|..|....
T Consensus        98 ~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g~~~~~~P~L~g~~~--------------------~~~~~~l~~~~~g~  157 (190)
T 1m70_A           98 ALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHA--------------------AYTAKQLTDFREGN  157 (190)
T ss_dssp             HHHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGGTBCCCTTCCH--------------------HHHHHHHHHHHHTS
T ss_pred             cchhhHHHHHhCCCcccCCcchhhcCCCCCCCCCCCCCCCcCCCCH--------------------HHHHHHHHHHHhCC
Confidence            356899999998        899999998755433 5788875411                    11344565565443


Q ss_pred             CCCCCCC-CC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           81 KKYIPGT-KM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        81 ~~~~~~~-~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +...+.. .| +|...||++||++|++||++|+
T Consensus       158 ~~~~~~~~~Mp~~~~~Ls~~ei~~l~~Yl~sl~  190 (190)
T 1m70_A          158 RTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH  190 (190)
T ss_dssp             CCTTTTTCHHHHHHTTCCHHHHHHHHHHHHTCC
T ss_pred             CCCCCccccHHHHHHhCCHHHHHHHHHHHHhCc
Confidence            3333333 56 4767789999999999999984

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.53  E-value=5.1e-15  Score=112.53  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      ..+++++|+++|.++|+.||+.++.+....+|.|.++..                     ++.++|..+|+++....+ .
T Consensus       589 ~~~~~~~G~~l~~~~C~~CHg~~g~g~~~~~P~L~~~~~---------------------~~~~~l~~~i~~g~~~~~-~  646 (677)
T 1kb0_A          589 DPAKVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMVR-G  646 (677)
T ss_dssp             CGGGHHHHHHHHHHHTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGGG-T
T ss_pred             ChhhHHHHHHHHhhhhhhhCCCCCcCCCCCCCCccccCc---------------------ccHHHHHHHHHcCCCCCC-C
Confidence            345679999999999999999987665567899986532                     256789999998875432 2


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |++|...|+++||++|++||++|+
T Consensus       647 Mp~~~~~ls~~ei~~l~~Yl~~l~  670 (677)
T 1kb0_A          647 MPDFTGKLSGDDVESLKAFIQGTA  670 (677)
T ss_dssp             CCCCTTTSCTTHHHHHHHHHHHHH
T ss_pred             CCcccccCCHHHHHHHHHHHHhcc
Confidence            446877789999999999999885

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=99.52  E-value=3.3e-15  Score=96.80  Aligned_cols=79  Identities=22%  Similarity=0.229  Sum_probs=54.5

Q ss_pred             CCCCCHHHHHHHHHh--------hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769            7 APPGNPKAGEKIFKT--------KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~--------~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      ...+.+++|++||..        +|+.||+.++.+ ...+|.|.+.                        ...++...|+
T Consensus        95 ~~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g~g-~~~~P~L~~~------------------------~~~~~~~~l~  149 (183)
T 1h1o_A           95 IKHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQG-AGPFPRLAGQ------------------------RYGYIIQQLT  149 (183)
T ss_dssp             CCCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCC-BTTBCCCTTC------------------------CHHHHHHHHH
T ss_pred             CchhhHHhHHHHHHcCCcccCCCcchhhCCCCCCC-CCCCCCCCCC------------------------CHHHHHHHHH
Confidence            345678999999998        899999998755 4567888753                        2333444443


Q ss_pred             CCCCC-CCCCCC-CCCCCCCHHHHHHHHHHHHhh
Q 033769           79 NPKKY-IPGTKM-VFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        79 ~~~~~-~~~~~m-~~~~~l~~~ei~~l~ayl~sl  110 (112)
                      +.... .++..| +|...||++||++|++||++|
T Consensus       150 ~~~~g~~~~~~Mp~~~~~Ls~~ei~~l~~yl~sl  183 (183)
T 1h1o_A          150 YFHNGTRVNTLMNQIAKNITVAQMKDVAAYLSSL  183 (183)
T ss_dssp             HHHHTSSCCHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred             HHHcCCCCCcchHHHHHhCCHHHHHHHHHHHHhC
Confidence            22111 112345 576678999999999999986

>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.50  E-value=1.8e-14  Score=94.37  Aligned_cols=82  Identities=23%  Similarity=0.493  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHh-hCccccc--ccCC------------------------CCCCCCCCCCCccCCCCCCCCCCccchhcc
Q 033769           10 GNPKAGEKIFKT-KCAQCHT--VVKG------------------------AGHKQGPNLNGLFGRQSGTTPGYSYSAANK   62 (112)
Q Consensus        10 ~~~~~G~~lf~~-~C~~CH~--~~~~------------------------~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~   62 (112)
                      ....+|+.+|.+ .|..||+  +++-                        |.+.+||+|+++.+|+              
T Consensus        51 ~~~~~Gr~iy~~eGC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~vG~R~--------------  116 (203)
T 3mk7_B           51 ALQLEGRDLYIREGCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRY--------------  116 (203)
T ss_dssp             HHHHHHHHHHHHHTGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTCTTTS--------------
T ss_pred             HHHHHHHHHHHHCChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhhhccC--------------
Confidence            345789999976 4999999  5432                        2356788888876654              


Q ss_pred             ccceeeCHHHHHHHHhCCCCCCCCCCCC-CC----C--------------------------------CCCHHHHHHHHH
Q 033769           63 GMAVIWEEKTLYDYLLNPKKYIPGTKMV-FP----G--------------------------------LKKPQDRADLIA  105 (112)
Q Consensus        63 ~~~~~~~~~~l~~~l~~~~~~~~~~~m~-~~----~--------------------------------~l~~~ei~~l~a  105 (112)
                            +.+++..+|.+|+...|++.|| |.    .                                +.+..|+++||+
T Consensus       117 ------s~~wl~~~I~dPq~v~PGS~MPay~~L~~~~~~~~~~~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvA  190 (203)
T 3mk7_B          117 ------SDDWHRAHLYNPRNVVPESKMPSYPWLVENTLDGKDTAKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVA  190 (203)
T ss_dssp             ------CHHHHHHHHHCHHHHSTTCCCCCCTHHHHCBCCCTTHHHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHH
T ss_pred             ------CHHHHHHHHhCccccCCCCCCCCCccccccccchHHHHHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHH
Confidence                  6789999999999999999886 54    0                                122368899999


Q ss_pred             HHHhhc
Q 033769          106 YLKEST  111 (112)
Q Consensus       106 yl~sl~  111 (112)
                      ||.+|.
T Consensus       191 YLq~Lg  196 (203)
T 3mk7_B          191 YLQVLG  196 (203)
T ss_dssp             HHTTTT
T ss_pred             HHHHhC
Confidence            998875

>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1

Probab=99.47  E-value=9.6e-15  Score=84.03  Aligned_cols=79  Identities=10%  Similarity=0.067  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV   90 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~   90 (112)
                      .+..|++||..+|+.||+.++.+    +|.+.....+.          +.+..   ....+.+...+.++..    .|++
T Consensus         3 ~~~~G~~ly~~~Ca~CHg~~~~G----~p~~~~~~~~~----------~~l~~---~~~~~~l~~~i~~G~~----~MP~   61 (83)
T 1cc5_A            3 GARSGDDVVAKYCNACHGTGLLN----APKVGDSAAWK----------TRADA---KGGLDGLLAQSLSGLN----AMPP   61 (83)
T ss_dssp             CSSCSHHHHHHTTHHHHTTTTTT----CCCTTCHHHHH----------HHHHH---HTSSTTTHHHHHHCBT----TBCS
T ss_pred             hhHHHHHHHHHHHHHHCcCCCCC----CCCCCCHHHHH----------HHhhc---ccCHHHHHHHHHcCcc----CCCC
Confidence            44579999999999999975422    35543311000          00000   0012245566666653    3446


Q ss_pred             CCC--CCCHHHHHHHHHHHHhh
Q 033769           91 FPG--LKKPQDRADLIAYLKES  110 (112)
Q Consensus        91 ~~~--~l~~~ei~~l~ayl~sl  110 (112)
                      |..  .|||+||++|++||+++
T Consensus        62 ~~~~~~Lsd~ei~~v~~yi~~~   83 (83)
T 1cc5_A           62 KGTCADCSDDELKAAIGKMSGL   83 (83)
T ss_dssp             SSSCSSCCHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHhC
Confidence            765  68999999999999864

>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=99.45  E-value=3.2e-13  Score=89.66  Aligned_cols=88  Identities=24%  Similarity=0.363  Sum_probs=55.9

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHH-HHHHHHhCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEK-TLYDYLLNPKKYIPGT   87 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~   87 (112)
                      .+++.+|++||..+|+.||+.++.+ ...+|.|.+..+.....       ......+..|... .+..++.       ..
T Consensus        32 ~~~~~~G~~Ly~~~Ca~CHG~~G~G-~~~~P~L~g~~~~l~~~-------~~~~~~g~~~~~~~~l~~~~~-------~~   96 (205)
T 2xts_B           32 SGDVATGDALFADNCASCHGDFAEG-LDSWPVLAGGDGSLTDP-------RPVKTIGSYWPYLSTVYDYVH-------RS   96 (205)
T ss_dssp             EEEHHHHHHHHHHHTHHHHCTTSSC-STTSCCCSCCTTCTTSS-------SCCCCTTTTCCCHHHHHHHHH-------HH
T ss_pred             hhhHHHHHHHHHhhhHHhCCCCCCC-CCCCCCccCCccccccc-------chhhhhccccchhHHHhccCc-------CC
Confidence            4578999999999999999998654 34568888753222110       0111223333322 2333332       23


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |+ +|...||++||++|++||+++.
T Consensus        97 MP~~~~~~LsdeEi~aL~aYl~sl~  121 (205)
T 2xts_B           97 MPFGSAQTLSVDDTYAITAFLLYSN  121 (205)
T ss_dssp             CSTTSCSCCCHHHHHHHHHHHHHHT
T ss_pred             CCcccccCCCHHHHHHHHHHHHhcc
Confidence            44 4667789999999999999885

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.45  E-value=3.6e-14  Score=107.72  Aligned_cols=79  Identities=15%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|+++|.++|+.||+.++.+ ...+|.|.+...                     ++.+.+...++++..... .|+
T Consensus       578 ~~~~~G~~l~~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~~~-~Mp  634 (668)
T 1kv9_A          578 EQVQAGKQLYGQFCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKPL-GMP  634 (668)
T ss_dssp             HHHHHHHHHHHHHTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGGG-TCC
T ss_pred             HHHHHHHHHHhhhhHhhCcCCCcC-CCCCCCCcCCCC---------------------CCHHHHHHHHHhCCCCCC-CCC
Confidence            346899999999999999998765 567888876321                     145677888887764322 244


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...|+++||++|++||+++.
T Consensus       635 ~~~~~ls~~ei~~l~~yl~~~~  656 (668)
T 1kv9_A          635 SFDDSLKPEEVEQIKLYVMSRE  656 (668)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHhcc
Confidence            6888889999999999999874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.44  E-value=6.1e-14  Score=106.82  Aligned_cols=78  Identities=19%  Similarity=0.311  Sum_probs=60.4

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||.++|+.||+.++.+ ...+|.|.+...                     ++.+.+..+++++...  ..|+
T Consensus       593 ~~~~~G~~ly~~~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~--~~Mp  648 (689)
T 1yiq_A          593 ASIEAGAKLYDGYCSQCHGIHAVS-GGVLPDLRKLTP---------------------EKHQMFLGILFGGRVP--DGMP  648 (689)
T ss_dssp             HHHHHHHHHHHHHTHHHHCGGGCC-CSSSCCTTSCCH---------------------HHHHTHHHHHTTTTGG--GTCC
T ss_pred             HHHHHHHHHHhhhhhhhCCCCCcC-CCCCCCcccCCc---------------------CCHHHHHHHHHcCCCC--CCCC
Confidence            356899999999999999998755 567888875321                     1567788888888643  2344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...|+++||++|++||+++.
T Consensus       649 ~~~~~ls~~ei~~l~~Yl~~~~  670 (689)
T 1yiq_A          649 SFADAFTPEQVDQIHQYLIKRA  670 (689)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHhcc
Confidence            6887789999999999999874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.42  E-value=5.8e-14  Score=104.31  Aligned_cols=78  Identities=14%  Similarity=0.245  Sum_probs=57.6

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCC-ccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNG-LFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      .++.++|++||..+|+.||+.++.+  ..+|.|.. ...+                    .+.++|..+|+++..   +.
T Consensus        33 ~~~~~~G~~l~~~~Ca~CHg~~g~g--~~~p~l~~~~~~~--------------------~~~~~l~~~i~~G~~---~~   87 (543)
T 1nir_A           33 ESEFNEAKQIYFQRCAGCHGVLRKG--ATGKPLTPDITQQ--------------------RGQQYLEALITYGTP---LG   87 (543)
T ss_dssp             HHHHHHHHHHHHHHTHHHHTTTTCC--SSSSCCSHHHHHH--------------------HCHHHHHHHHHHCCS---SS
T ss_pred             hhHHHHHHHHHhhhhHhhCCCCCCC--CCCCCCcchhccc--------------------CCHHHHHHHHHcCCC---CC
Confidence            3456899999999999999987643  34788752 1111                    157789999988752   33


Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFP--GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~--~~l~~~ei~~l~ayl~sl~  111 (112)
                      |++|.  ..|+++||++|++||+++.
T Consensus        88 Mp~~~~~~~ls~~ei~~l~~yl~~~~  113 (543)
T 1nir_A           88 MPNWGSSGELSKEQITLMAKYIQHTP  113 (543)
T ss_dssp             CCCSTTTTSSCHHHHHHHHHHTTSCC
T ss_pred             CCCcccccCCCHHHHHHHHHHHHhcc
Confidence            44676  6789999999999999875

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=99.41  E-value=6.7e-14  Score=90.63  Aligned_cols=85  Identities=13%  Similarity=0.184  Sum_probs=53.2

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCC--CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI   84 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~--~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~   84 (112)
                      .....+..|+.+|...|+.||+.+|.|..  ...|.|.+....                    +-...|..|....+...
T Consensus        85 ~~~~~~~~g~~~~~~~Ca~CHg~~G~G~~~~~~~P~L~gq~~~--------------------yl~~~L~~~~~g~r~~~  144 (174)
T 3vrd_A           85 FDKALVAKGTKLHDKYCEKCHVESGKPLADQDEYHILAGQWTP--------------------YLRYAIEDFRAERRPME  144 (174)
T ss_dssp             CCGGGHHHHHHHHHHHTTTTSGGGGCCCTTCSSCCCCTTSCHH--------------------HHHHHHHHHHTTSSCCC
T ss_pred             cchhhhccchhhhcchhHhhcCcCCCCCCCCCCCCccCCCCHH--------------------HHHHHHHHHHcCCcCCC
Confidence            34456789999999999999999875532  235666543100                    01233444432222211


Q ss_pred             C--CCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           85 P--GTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 ~--~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +  ..+| .|...|||+||++|++||.|++
T Consensus       145 ~~~~~~M~~~a~~Lsd~eI~alaaY~~S~k  174 (174)
T 3vrd_A          145 KKMASKLKELLKAEGEDGLDALFAFYASQQ  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CccchhhHHHHhhCCHHHHHHHHHHHHHcC
Confidence            1  1245 5777789999999999999974

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=99.40  E-value=1.7e-13  Score=95.93  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=58.0

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV   90 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~   90 (112)
                      .+++|+++|.++|+.||+.++.+. ..+|+|.+..... +                 .+.+.|...|.+++.   +.|++
T Consensus       131 ~~~~G~~lf~~~Ca~CHg~~g~g~-~g~P~L~~~~~~~-g-----------------~~~~~l~~~i~~G~~---~~Mp~  188 (311)
T 3mk7_C          131 AVKMGARLFANYCSICHGSDAKGS-LGFPNLADQDWRW-G-----------------GDAASIKTSILNGRI---AAMPA  188 (311)
T ss_dssp             HHHHHHHHHHHHTHHHHCTTSCCB-TTBCCSSSSCCSS-C-----------------CSHHHHHHHHHHCEE---CCBCC
T ss_pred             HHHHHHHHHhhhHHHhCCCCCCCC-CCCCCCCCccccc-C-----------------CCHHHHHHHHHhCCc---CCCcc
Confidence            357899999999999999986543 2368887632111 0                 157789999988742   34446


Q ss_pred             CCCCCCHHHHHHHHHHHHh-hc
Q 033769           91 FPGLKKPQDRADLIAYLKE-ST  111 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~s-l~  111 (112)
                      |...++++|+++|++||++ ++
T Consensus       189 ~~~~Ls~~ei~~laaYl~s~l~  210 (311)
T 3mk7_C          189 WGQAIGEEGVKNVAAFVRKDLA  210 (311)
T ss_dssp             CHHHHCHHHHHHHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHHHHHhhcc
Confidence            7666789999999999998 75

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.40  E-value=1.4e-13  Score=103.04  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=57.1

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +..+.|++||..+|+.||+.++.|  ..+|+|....               +    ...+.++|..+|+++..   +.|+
T Consensus        52 ~~~~~G~~ly~~~Ca~CHg~~g~G--~~gp~L~~~~---------------~----~~~~~~~l~~~i~~G~~---~~Mp  107 (567)
T 1qks_A           52 AQYNEANKIYFERCAGCHGVLRKG--ATGKALTPDL---------------T----RDLGFDYLQSFITYASP---AGMP  107 (567)
T ss_dssp             HHHHHHHHHHHHHTHHHHCTTSSC--SSSCCCCHHH---------------H----HHHCHHHHHHHHTTCCC---CCCT
T ss_pred             HHHHHHHHHHhhhhHhhCCCCCCC--CCCCCCCchh---------------h----ccCCHHHHHHHHHhCCC---CCCC
Confidence            346899999999999999987643  4578775310               0    00156789999988753   3333


Q ss_pred             CCC--CCCCHHHHHHHHHHHHhhc
Q 033769           90 VFP--GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~--~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|.  ..|+++||++|++||+++.
T Consensus       108 ~~~~~~~Lsd~ei~~l~~yi~~~~  131 (567)
T 1qks_A          108 NWGTSGELSAEQVDLMANYLLLDP  131 (567)
T ss_dssp             TTSCCCCCCHHHHHHHHHHHHSCC
T ss_pred             CccccCCCCHHHHHHHHHHHhhcc
Confidence            586  7889999999999999875

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=99.37  E-value=5.8e-14  Score=90.92  Aligned_cols=82  Identities=16%  Similarity=0.202  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCC-CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC-CC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGH-KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI-PG   86 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~   86 (112)
                      ++++.+|++|| .+|+.||+.++.+.. ..+|.|.+..                    ..|..+.|..++...+... ..
T Consensus         3 ~~~~~~G~~l~-~~Ca~CHg~~g~g~~~~~~P~L~~~~--------------------~~~~~~~l~~~~~g~r~~~~~~   61 (183)
T 1h1o_A            3 SADAPAPYRVS-SDCMVCHGMTGRDTLYPIVPRLAGQH--------------------KSYMEAQLKAYKDHSRADQNGE   61 (183)
T ss_dssp             ---------CG-GGTHHHHCBTTBCCSSTTSCCCTTCC--------------------HHHHHHHHHHHHTTCCCCHHHH
T ss_pred             cccHHHHHHHH-hHHHHhcCCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCCCCCCcc
Confidence            46788999999 899999999865443 4567776531                    0122334444433222100 02


Q ss_pred             CCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ..| +|...++++|+++|++||+++.
T Consensus        62 ~~Mp~~~~~ls~~e~~al~~yl~~~~   87 (183)
T 1h1o_A           62 IYMWPVAQALDSAKITALADYFNAQK   87 (183)
T ss_dssp             HHTHHHHHTCCHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence            345 4655678999999999999875

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=99.37  E-value=2.9e-13  Score=98.53  Aligned_cols=80  Identities=14%  Similarity=0.202  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC---C---
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY---I---   84 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~---   84 (112)
                      ++++|+++|.++|+.||+.++.+....+|+|.+.  .       +.          ..+.+.+...++++...   .   
T Consensus       338 ~~~~G~~ly~~~Ca~CHg~~g~g~~~~~P~L~~~--~-------~~----------~~~~~~~~~~i~~G~~~~~~~~g~  398 (442)
T 2zoo_A          338 QIRFGQRVYEANCMACHQANGEGIPGAFPPLAKS--D-------YL----------NNNPLLGVNAIIKGLSGPIKVNNV  398 (442)
T ss_dssp             HHHHHHHHHHHHTHHHHCTTSCCBTTTBCCCTTC--H-------HH----------HHCHHHHHHHHHHCEESCEEETTE
T ss_pred             hhHHHHHHHHhhhHHhCCCCCCCCCCCCCCCCCc--c-------cc----------cCCHHHHHHHHHcCccccccccCC
Confidence            4689999999999999999876655567888752  0       00          01345667777766432   0   


Q ss_pred             -CCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           85 -PGTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 -~~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                       ....| +|.  ||++||++|++||+++.
T Consensus       399 ~~~~~MP~~~--Lsd~ei~~l~~Yl~~~~  425 (442)
T 2zoo_A          399 NYNGVMPAMN--LNDEDIANVITFVLNNW  425 (442)
T ss_dssp             EECCEECCCC--CCHHHHHHHHHHHHTST
T ss_pred             ccCCCCCCCC--CCHHHHHHHHHHHHHhc
Confidence             12456 465  78999999999999874

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=99.35  E-value=2.9e-13  Score=87.64  Aligned_cols=71  Identities=18%  Similarity=0.327  Sum_probs=49.5

Q ss_pred             HHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC-CCCCCCC-CCCCC
Q 033769           17 KIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK-YIPGTKM-VFPGL   94 (112)
Q Consensus        17 ~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~m-~~~~~   94 (112)
                      ++|..+|+.||+.+|.+.....|.|.+.                        +.++|.+.|++.+. ..+...| ++...
T Consensus         5 ~~~a~~C~~CHg~~G~~~~~~~P~LaG~------------------------~~~~i~~~l~~~~~g~~~~~~M~~~~~~   60 (174)
T 3vrd_A            5 EMLANNCAGCHGTRGNSAGPASPSIAQM------------------------DPAVFVEVMEQFKSGEIQSTIMGRIAKG   60 (174)
T ss_dssp             HHHHGGGHHHHCGGGCCCCSSSCCCTTC------------------------CHHHHHHHHHHHHHTSSCCSSHHHHHTT
T ss_pred             HHHHhhHHHhCCCcCCCCCCCCCCcCCC------------------------CHHHHHHHHHHhhcCCccccccchhhcc
Confidence            4556699999999876655667888653                        45566666643321 1234456 56666


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 033769           95 KKPQDRADLIAYLKEST  111 (112)
Q Consensus        95 l~~~ei~~l~ayl~sl~  111 (112)
                      |+++||++|++||.+++
T Consensus        61 Ls~~di~~la~Y~~s~~   77 (174)
T 3vrd_A           61 YSTADFQKMAEYFKQQT   77 (174)
T ss_dssp             SCHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHhhhhccc
Confidence            88999999999999875

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=99.34  E-value=8.4e-13  Score=85.86  Aligned_cols=80  Identities=24%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCC-------
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKK-------   82 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------   82 (112)
                      +++++|++| ..+|+.||+.++.+....+|+|.+...                    .|..++|..++. +..       
T Consensus         2 ~~~~~G~~l-~~~C~~CHg~~g~g~~~~~P~L~~~~~--------------------~~~~~~l~~~~~-G~~~~~~~~~   59 (190)
T 1m70_A            2 GDAEAGQGK-VAVCGACHGVDGNSPAPNFPKLAGQGE--------------------RYLLKQLQDIKA-GSTPGAPEGV   59 (190)
T ss_dssp             CCHHHHHTT-CGGGHHHHCTTSCCCCTTSCCCTTCCH--------------------HHHHHHHHHHHH-HHSTTCCTTS
T ss_pred             cchhHHHHH-HhHHHhhcCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHc-CCcccccccc
Confidence            688999999 568999999987655456788875311                    123445555542 211       


Q ss_pred             CCCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           83 YIPGTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        83 ~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ..+...| +|...++++|+++|++||+++.
T Consensus        60 ~~~~~~Mp~~~~~ls~~e~~~l~~yl~~~~   89 (190)
T 1m70_A           60 GRKVLEMTGMLDPLSDQDLEDIAAYFSSQK   89 (190)
T ss_dssp             SCCCGGGTTTTTTCCHHHHHHHHHHHHHSC
T ss_pred             CCCCcchHHHHHHCCHHHHHHHHHHHHhCC
Confidence            0223456 4767789999999999999875

>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*

Probab=98.85  E-value=2e-09  Score=61.42  Aligned_cols=18  Identities=33%  Similarity=0.715  Sum_probs=16.2

Q ss_pred             HHHHHHHHhhCccccccc
Q 033769           13 KAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus        13 ~~G~~lf~~~C~~CH~~~   30 (112)
                      ..|+++|..+|+.||+.+
T Consensus        19 ~~G~~l~~~~C~~CH~~~   36 (81)
T 2blf_B           19 QPGFEAAQNNCAACHSVD   36 (81)
T ss_dssp             STHHHHHHHHTTSSSCTH
T ss_pred             cchHHHHHHHHHHhcCCc
Confidence            589999999999999864

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=98.83  E-value=1.1e-08  Score=72.14  Aligned_cols=38  Identities=13%  Similarity=0.288  Sum_probs=26.4

Q ss_pred             ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |..++.+++..+.....         +...||++|+++||+||++|+
T Consensus       266 G~~~tL~evv~~y~~~~---------~~~~Ls~~E~~~LvaFL~tLt  303 (328)
T 1zzh_A          266 GKVWDLREAVSVMANSQ---------LGATLDDTQVDQITAFLGTLT  303 (328)
T ss_dssp             TCBCCHHHHHHHHHSST---------TSCCCCHHHHHHHHHHHGGGC
T ss_pred             CccCCHHHHHHHhhccc---------cCCCCCHHHHHHHHHHHHHcC
Confidence            34456666666654321         223578999999999999986

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=98.81  E-value=4.5e-10  Score=77.48  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHh-------hCcccccccCCCCC-C---CCCCCCCccCCCCCCCCCCccchhccccceeeC-HHHHHHHHh
Q 033769           11 NPKAGEKIFKT-------KCAQCHTVVKGAGH-K---QGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE-EKTLYDYLL   78 (112)
Q Consensus        11 ~~~~G~~lf~~-------~C~~CH~~~~~~~~-~---~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~   78 (112)
                      .++.|++||.+       +|+.||+.+|.+.. .   ..|.|..-                   .|...+ .+.|...+.
T Consensus        52 ~v~~G~~lf~~~~g~n~~~Ca~CHg~~G~g~~~G~~a~yP~l~~~-------------------~g~v~~L~~~I~~c~~  112 (275)
T 3oa8_A           52 NVDRGEVLWSEPRGTRNVSLETCDLGEGPGKLEGAYAHLPRYFAD-------------------TGKVMDLEQRLLWCME  112 (275)
T ss_dssp             HHHHHHHHHTCCBTTTTBCSTTCBSSSSBTCCTTTGGGCSEEETT-------------------TTEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcCCCCCCcccccCCccCCCcccChhhhCcCcccc-------------------CCCHHHHHHHHHHHHH
Confidence            36899999986       69999987643211 1   12333211                   111112 234555544


Q ss_pred             CCCCCCC-CCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           79 NPKKYIP-GTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        79 ~~~~~~~-~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ......+ ...| ++...|+++||.+|++|+.+|+
T Consensus       113 ~~~g~~~~~~~M~p~~~~Ls~~di~~laaY~asls  147 (275)
T 3oa8_A          113 TIQGRDTKPLVAKPFSGPGRTSDMEDLVAFIANKS  147 (275)
T ss_dssp             HTTCCCCHHHHHSCSCBTTBCCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccCCHHHHHHHHHHHHHcC
Confidence            3221111 1123 6766678999999999999986

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=98.75  E-value=7e-09  Score=72.86  Aligned_cols=38  Identities=11%  Similarity=0.288  Sum_probs=26.1

Q ss_pred             ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |..++.++...+...+         .+...||++|+++|++||++|+
T Consensus       254 G~~~tL~evv~~~~~~---------~~~~~Ls~~E~~~LvaFL~sLt  291 (320)
T 3o5c_A          254 GSVWTLEEAVNTMADI---------QLGQKLTEKETKEMVAFLNSLT  291 (320)
T ss_dssp             TCBCSHHHHHHHHHHH---------HHSCCCCHHHHHHHHHHHHTTC
T ss_pred             CCcCcHHHHHHHhccc---------ccccCCCHHHHHHHHHHHHHcC
Confidence            4445666666664321         1223578999999999999997

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=98.73  E-value=2e-08  Score=71.03  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=25.3

Q ss_pred             ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |..++.+++..+....       .+  ...||++|+++||+||++|+
T Consensus       277 G~~~tL~evv~~y~~~-------~~--~~~Ls~~E~~~LvaFL~sLt  314 (338)
T 2c1v_A          277 GVVWELAEAVKIMSSA-------QI--GTELTDQQAEDITAFLGTLT  314 (338)
T ss_dssp             TCBCCHHHHHHHHHHH-------HT--CCCCCHHHHHHHHHHHHTTC
T ss_pred             CccCCHHHHHHHHHhh-------cc--cCCCCHHHHHHHHHHHHHcC
Confidence            3445666666664321       11  23468999999999999996

>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}

Probab=98.70  E-value=2.4e-09  Score=62.50  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=18.8

Q ss_pred             CCHHHHHHHHHhhCccccccc
Q 033769           10 GNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      .++..|++||+.+|..||+.+
T Consensus        25 ~~~~~g~~l~~~kC~~CHs~d   45 (92)
T 3a9f_A           25 FDFDAAKKLVDVRCNKCHTLD   45 (92)
T ss_dssp             CCHHHHHHHHHHHSSSSSCSG
T ss_pred             cChHhHHHHHHhHHHHhcCCc
Confidence            367899999999999999986

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=98.70  E-value=5.8e-08  Score=68.42  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=25.8

Q ss_pred             ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |..++.+++..++...       .+  ...||++|+++||+||++|+
T Consensus       263 G~~~tL~evv~~~~~~-------~~--~~~Ls~~e~~~LvAFL~sLt  300 (326)
T 1nml_A          263 GAVWSLEEAVAVMGTA-------QL--GTELNNDEVKSIVAFLKTLT  300 (326)
T ss_dssp             CCBCCHHHHHHHTCCT-------TT--TCCCCHHHHHHHHHHHGGGC
T ss_pred             CCcCCHHHHHHHhhhh-------cc--CCCCCHHHHHHHHHHHHHcC
Confidence            4456666666663221       11  23478999999999999997

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=98.70  E-value=1.2e-08  Score=72.22  Aligned_cols=38  Identities=13%  Similarity=0.198  Sum_probs=26.6

Q ss_pred             ceeeCHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           65 AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        65 ~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |..++.+++.++...+..       .  --||++|+++||+||++|+
T Consensus       280 G~~~tLeevv~~y~~~~~-------~--~~Lt~~E~~~LvAFL~tLt  317 (341)
T 4aan_A          280 GKVWKLKDAVKIMGSAQL-------G--ISITDADADKIVTFLNTLT  317 (341)
T ss_dssp             CCBCCHHHHHHHHHHHHH-------S--CCCCHHHHHHHHHHHHTTC
T ss_pred             CCcCCHHHHHHHHhccCc-------C--CCCCHHHHHHHHHHHHccC
Confidence            555677777766543211       1  2368999999999999997

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=98.69  E-value=1.5e-08  Score=69.35  Aligned_cols=85  Identities=18%  Similarity=0.199  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHh-------hCcccccccCCCCCCCCCCCC-CccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCC
Q 033769           10 GNPKAGEKIFKT-------KCAQCHTVVKGAGHKQGPNLN-GLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPK   81 (112)
Q Consensus        10 ~~~~~G~~lf~~-------~C~~CH~~~~~~~~~~gP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   81 (112)
                      .++++|++||..       .|++||+.+ .|....+|.|. +++..    .+.|.+.     .+..|+...-...   ..
T Consensus       157 ~~~~~G~~lF~~~~g~~~~~Ca~CHg~~-~G~~~g~~~l~~~~~~~----~p~Yr~~-----~g~~~tl~~ri~~---~~  223 (261)
T 1h32_A          157 STWEKGREIYYTRYGQLDLSCASCHEQY-FDHYIRADHLSQGQING----FPSYRLK-----NARLNAVHDRFRG---CI  223 (261)
T ss_dssp             HHHHHHHHHHTCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCTT----CSEEETT-----TTEEECHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccccCCCC-CCCCCCCCcCCCCcccC----Ccceecc-----CcchhhHHHHHHH---HH
Confidence            356899999987       599999975 22222234443 33221    1222211     1223333332222   11


Q ss_pred             CCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           82 KYIPGTKM-VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        82 ~~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                           .+| .....++++||.+|++||.+|++
T Consensus       224 -----~~m~~~~~~Ls~~ei~aLaaYl~sL~~  250 (261)
T 1h32_A          224 -----RDTRGVPFAVGSPEFVALELYVASRGN  250 (261)
T ss_dssp             -----HTTTBCCCCTTCHHHHHHHHHHHHHTT
T ss_pred             -----hccCCCCCCCChHHHHHHHHHHHHhcC
Confidence                 123 23345789999999999999874

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=98.67  E-value=1.5e-08  Score=70.86  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=18.2

Q ss_pred             CCCHHHHHHHHHh-hCccccccc
Q 033769            9 PGNPKAGEKIFKT-KCAQCHTVV   30 (112)
Q Consensus         9 ~~~~~~G~~lf~~-~C~~CH~~~   30 (112)
                      ...+.+|++||.. .|+.||+..
T Consensus       168 t~~~~~G~~LF~~~gCa~CH~~~  190 (308)
T 1iqc_A          168 NQDELEGYNLFKGSGCVQCHNGP  190 (308)
T ss_dssp             CHHHHHHHHHHHHHTGGGTSCTT
T ss_pred             CHHHHHHHHHHcCCChhhcCCCc
Confidence            4557899999997 699999854

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=98.67  E-value=3.3e-08  Score=69.58  Aligned_cols=19  Identities=21%  Similarity=0.454  Sum_probs=16.9

Q ss_pred             CCCCHHHHHHHHHHHHhhc
Q 033769           93 GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        93 ~~l~~~ei~~l~ayl~sl~  111 (112)
                      ..||++|+++||+||++|+
T Consensus       282 ~~Ls~~E~~~LvaFL~tLt  300 (323)
T 2vhd_A          282 KQLAPDDVENIVAFLHSLS  300 (323)
T ss_dssp             CCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHcC
Confidence            3578999999999999986

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=98.63  E-value=3.6e-08  Score=67.54  Aligned_cols=85  Identities=16%  Similarity=0.181  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHhh-------CcccccccCCCCCCCCCCCC-CccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCC
Q 033769           10 GNPKAGEKIFKTK-------CAQCHTVVKGAGHKQGPNLN-GLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPK   81 (112)
Q Consensus        10 ~~~~~G~~lf~~~-------C~~CH~~~~~~~~~~gP~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   81 (112)
                      .+.++|++||..+       |++||+.+ .|....+|.|. +++.    ..+.|.+.     .+..++.......   . 
T Consensus       160 ~~~~~G~~lF~~~~G~~~~aCa~CHg~~-~G~~~~~~~l~~g~~~----~~p~Y~~~-----~~~~~t~~~r~~~---~-  225 (264)
T 2c1d_A          160 PYWEHGKEIYYTRYGQLEMSCANCHEDN-AGNMIRADHLSQGQIN----GFPTYRLK-----DSGMVTAQHRFVG---C-  225 (264)
T ss_dssp             HHHHHHHHHHHCCBTTTTBCHHHHHTTS-TTSEETTEECCCCCCT----TCSEEETT-----TTEEECHHHHHHH---H-
T ss_pred             HHHHHHHHHHHhhcCCCCCcccccCCCC-CCCCcCCCcCCCcccc----CCcchhhc-----ccccccHHHHHHH---H-
Confidence            3578999999976       99999976 22112233332 2221    11222211     1112222222221   1 


Q ss_pred             CCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           82 KYIPGTKM-VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        82 ~~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                          ...| .....|+++||.+|++||.+|++
T Consensus       226 ----~~~M~~~~~~Ls~~ei~aLaaYv~sL~~  253 (264)
T 2c1d_A          226 ----VRDTRAETFKAGSDDFKALELYVASRGN  253 (264)
T ss_dssp             ----HHTTTBCCCCTTCHHHHHHHHHHHHHTT
T ss_pred             ----HhhccCCCCCCCHHHHHHHHHHHHHccC
Confidence                0124 34556789999999999999863

>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*

Probab=98.60  E-value=2.3e-08  Score=60.83  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=17.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcC
Q 033769           93 GLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        93 ~~l~~~ei~~l~ayl~sl~~  112 (112)
                      .-.|.+|..||++||.++.+
T Consensus       102 r~cTa~EK~D~~ayL~s~~~  121 (124)
T 1e8e_A          102 ADCSPSEKANFIAYLLTETK  121 (124)
T ss_dssp             SCCCHHHHHHHHHHHTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHcCC
Confidence            44689999999999999864

>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*

Probab=98.59  E-value=4.5e-08  Score=58.73  Aligned_cols=82  Identities=20%  Similarity=0.390  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHh----------hCcccccccCCCCC--CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHH
Q 033769            9 PGNPKAGEKIFKT----------KCAQCHTVVKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDY   76 (112)
Q Consensus         9 ~~~~~~G~~lf~~----------~C~~CH~~~~~~~~--~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   76 (112)
                      ..++++|+++|.+          .|++||+.+....+  ..|..+.-+.    .....-.|+          +.+.+.+|
T Consensus        19 ~~~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p~~~g~~~tgk~I~p~A----p~~np~Rft----------D~akvekw   84 (112)
T 1dw0_A           19 PADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLA----PSATPDRFT----------DSARVEKW   84 (112)
T ss_dssp             CCCHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSS----TTTSTTTTC----------CHHHHHHH
T ss_pred             cccHHHHHHHHhhhcccCCCCCCcccccCCCCcccCcccccCCcccCcC----CccCccccC----------CHHHHHHH
Confidence            5789999999932          49999998753211  1121111111    011111222          56677777


Q ss_pred             HhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 033769           77 LLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        77 l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl  110 (112)
                      ++..-..      -+..--|.+|..|+++||.++
T Consensus        85 f~rnc~~------v~gr~cta~EK~d~l~~l~~~  112 (112)
T 1dw0_A           85 LGRNCNS------VIGRDCTPGEKADLLAWLAAQ  112 (112)
T ss_dssp             HHHHHHH------HHSSCCCHHHHHHHHHHHHTC
T ss_pred             HHhhhhH------HHcccCCHHHHHHHHHHHHhC
Confidence            7533211      123445899999999999874

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=98.54  E-value=1.8e-08  Score=73.44  Aligned_cols=66  Identities=15%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             HHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC-CC
Q 033769           13 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM-VF   91 (112)
Q Consensus        13 ~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m-~~   91 (112)
                      ..|+.||..+|+.||+.++.|.      +..+....                   .+.+.....+.        .|+ .|
T Consensus         2 a~Gk~LF~~NCAaCHGagaqG~------~~~Is~qr-------------------~S~e~Wq~tV~--------RMp~a~   48 (494)
T 1jmx_A            2 EQGPSLLQNKCMGCHIPEGNDT------YSRISHQR-------------------KTPEGWLMSIA--------RMQVMH   48 (494)
T ss_dssp             CCHHHHHHHHHBTTBCEEETTE------ETTGGGCE-------------------ECHHHHHHHHH--------HHHHHH
T ss_pred             chhhHHHhhhhhhhcCCCccCc------cccccccC-------------------CCHHHHHHHHH--------hhhhhh
Confidence            3699999999999999875432      11111100                   02222222211        122 35


Q ss_pred             CCCCCHHHHHHHHHHHHhhc
Q 033769           92 PGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        92 ~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ...++++|+.+|++||.++.
T Consensus        49 Ga~LSdEEI~aVAaYLasls   68 (494)
T 1jmx_A           49 GLQISDDDRRTLVKYLADKQ   68 (494)
T ss_dssp             CCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHhC
Confidence            55678999999999998763

>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*

Probab=98.53  E-value=4.9e-07  Score=61.16  Aligned_cols=22  Identities=23%  Similarity=0.696  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHHHhhCccccccc
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      .+++.+|.++|..+|++||+..
T Consensus        26 ~aslqRG~qvy~~~CaaCHsl~   47 (248)
T 3cx5_D           26 HASIRRGYQVYREVCAACHSLD   47 (248)
T ss_dssp             HHHHHHHHHHHHHTGGGTCCCT
T ss_pred             hHhHhhhHHHHHHhhhhccCcc
Confidence            3457999999999999999986

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=98.52  E-value=7.3e-08  Score=68.29  Aligned_cols=19  Identities=16%  Similarity=0.122  Sum_probs=17.2

Q ss_pred             CCCCHHHHHHHHHHHHhhc
Q 033769           93 GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        93 ~~l~~~ei~~l~ayl~sl~  111 (112)
                      ..||++|+++|++||++|+
T Consensus       304 ~~Ls~~E~~~LvaFL~sLt  322 (345)
T 3hq9_A          304 IKLSDDESEAIAAFLGSLT  322 (345)
T ss_dssp             CCCCHHHHHHHHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHHHHhC
Confidence            4578999999999999997

>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*

Probab=98.47  E-value=7.1e-07  Score=63.86  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=18.6

Q ss_pred             CCCCCHHHHHHHHHh-hCcccccc
Q 033769            7 APPGNPKAGEKIFKT-KCAQCHTV   29 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~-~C~~CH~~   29 (112)
                      .....+.+|..||.. .|+.||..
T Consensus       184 aLt~~e~rG~~LF~~~~C~~CH~g  207 (373)
T 3sjl_A          184 KFTPLEEFGYTVFITWNCRLCHMQ  207 (373)
T ss_dssp             CCCHHHHHHHHHHHHSGGGGTSSS
T ss_pred             cCCHHHHHHHHHHCcCCCccccCC
Confidence            345667899999986 69999974

>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}

Probab=98.39  E-value=7.9e-07  Score=60.57  Aligned_cols=23  Identities=17%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             CCCHHHHHHHHHhhCcccccccC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~   31 (112)
                      .+++.+|.++|..+|++||+...
T Consensus        44 ~aslqRG~qVy~evCaaCHsl~~   66 (263)
T 2yiu_B           44 QHQLQRGLQVYTEVCSACHGLRY   66 (263)
T ss_dssp             HHHHHHHHHHHHHTGGGTCCCTT
T ss_pred             hHHHHHHHHHHHHHhhccCCccc
Confidence            34578999999999999999753

>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...

Probab=98.39  E-value=1.9e-06  Score=58.12  Aligned_cols=23  Identities=22%  Similarity=0.587  Sum_probs=19.7

Q ss_pred             CCCHHHHHHHHHhhCcccccccC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~   31 (112)
                      .+++.+|.++|..+|++||+...
T Consensus        23 ~~slqRG~qvy~~~CaaCHSl~y   45 (241)
T 1pp9_D           23 HTSIRRGFQVYKQVCSSCHSMDY   45 (241)
T ss_dssp             HHHHHHHHHHHHHTGGGTCCCTT
T ss_pred             hHHHhhhHHHHHHhhhhccCccc
Confidence            34579999999999999999863

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=98.37  E-value=2.7e-07  Score=63.61  Aligned_cols=88  Identities=19%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             CHHHHHHHHH-------hhCcccccccCCCCC-CCCCCCCCc-cCC--CCCCCCCCccchhccccceeeCHHH-HHHHHh
Q 033769           11 NPKAGEKIFK-------TKCAQCHTVVKGAGH-KQGPNLNGL-FGR--QSGTTPGYSYSAANKGMAVIWEEKT-LYDYLL   78 (112)
Q Consensus        11 ~~~~G~~lf~-------~~C~~CH~~~~~~~~-~~gP~l~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~   78 (112)
                      ..++|++||.       ..|++||+.+|.+.. ...|.|.+. .++  ..+..+.|....     ...|+... +..-. 
T Consensus       164 ~~~~G~~lf~~r~G~~~~~Ca~CHg~~G~g~~~~~~P~L~g~~qg~~~~~gq~p~Y~~~q-----~~~~~~~~R~~~c~-  237 (275)
T 3oa8_A          164 MYAIGEALFFRRSSINDFSCSTCHGAAGKRIRLQALPQLDVPGKDAQLTMATWPTYRVSQ-----SALRTMQHRMWDCY-  237 (275)
T ss_dssp             HHHHHHHHHHCCBTTTTBCHHHHHSSSSCEETTEECCCCSSSSHHHHHHHTTCSEEEGGG-----TEEECHHHHHHHHH-
T ss_pred             HHHHHHHHHHhccCCCCCchHhhCCCcCCCCCccCCCcccccccccccccccCHHHHHHH-----hhhhhhhhcccchh-
Confidence            3578999993       469999998764422 236888742 000  001122222111     11222221 21111 


Q ss_pred             CCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           79 NPKKYIPGTKM-VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        79 ~~~~~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                              ..| .....++++||.+|++||.+|++
T Consensus       238 --------~~M~~~a~~l~~~ei~ALa~Yl~~ls~  264 (275)
T 3oa8_A          238 --------RQMRMPAPDYASEAVTALTLYLTKQAE  264 (275)
T ss_dssp             --------HHTTCCCCCTTCHHHHHHHHHHHHHTT
T ss_pred             --------hhhccCCCCCChHHHHHHHHHHHHhCC
Confidence                    123 33455789999999999998864

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=98.20  E-value=4.6e-07  Score=62.06  Aligned_cols=18  Identities=6%  Similarity=0.161  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 033769           94 LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        94 ~l~~~ei~~l~ayl~sl~  111 (112)
                      .++++|+.+|++|+++++
T Consensus       128 ~l~~~~~~alaaY~~sls  145 (264)
T 2c1d_A          128 GVTSDNMKDMLSLISLQS  145 (264)
T ss_dssp             CTTSHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHh
Confidence            356899999999999986

>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*

Probab=98.05  E-value=2.1e-06  Score=62.58  Aligned_cols=18  Identities=33%  Similarity=0.881  Sum_probs=16.1

Q ss_pred             HHHHHHHhhCcccccccC
Q 033769           14 AGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~   31 (112)
                      .|++||..+|++||+.+.
T Consensus         2 ~GkeLv~anCasCHsad~   19 (489)
T 1pby_A            2 TGEEVLQNACAACHVQHE   19 (489)
T ss_dssp             CHHHHHHHTGGGTSCBCT
T ss_pred             ChHHHHHhhhHhhcCCCc
Confidence            589999999999999864

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=98.00  E-value=1.2e-06  Score=59.81  Aligned_cols=18  Identities=11%  Similarity=0.089  Sum_probs=15.7

Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 033769           94 LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        94 ~l~~~ei~~l~ayl~sl~  111 (112)
                      .++++|+.+|++|+++++
T Consensus       125 ~l~~~~i~alaaY~~sls  142 (261)
T 1h32_A          125 DYIGPDMTAMVALIASVS  142 (261)
T ss_dssp             CTTSHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHh
Confidence            356999999999999986

>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}

Probab=97.43  E-value=3.9e-05  Score=52.17  Aligned_cols=23  Identities=17%  Similarity=0.583  Sum_probs=19.7

Q ss_pred             CCCCHHHHHHHHHhhCccccccc
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      ..+++.+|.++|..+|++||+..
T Consensus        19 D~asLqRG~qvy~evCa~CHsl~   41 (258)
T 1zrt_D           19 DQAQLRRGFQVYNEVCSACHGMK   41 (258)
T ss_dssp             CHHHHHHHHHHHHHTTTTTCCCT
T ss_pred             CHHHHHHHHHHHHHHHhhcCCch
Confidence            34567999999999999999975

>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*

Probab=97.35  E-value=4.9e-05  Score=51.93  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             CCCCHHHHHHHHHhhCccccccc
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      ..+++.+|.++|..+|++||+..
T Consensus        21 D~asLqRG~qVy~evCaaCHsl~   43 (269)
T 2qjy_B           21 DQHQLQRGLQVYTEVCAACHGMK   43 (269)
T ss_dssp             CHHHHHHHHHHHHHTGGGTCCCT
T ss_pred             CHHHHHHHHHHHHHHHhhcCCch
Confidence            34567999999999999999975

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=97.16  E-value=0.0019  Score=45.39  Aligned_cols=24  Identities=25%  Similarity=0.492  Sum_probs=18.4

Q ss_pred             CCCCHHHHHHHHHhh---------CcccccccC
Q 033769            8 PPGNPKAGEKIFKTK---------CAQCHTVVK   31 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~---------C~~CH~~~~   31 (112)
                      ....++.|++||-..         |++||..+.
T Consensus        30 ~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~   62 (328)
T 1zzh_A           30 TRDKIDLGAMLFFDPRMSKSGVFSCQSCHNVGL   62 (328)
T ss_dssp             TTHHHHHHHHHHHCGGGSTTSSCCHHHHSBTTT
T ss_pred             CHHHHHHHHHHhCCcccccCCCcchhhcCCccc
Confidence            345578999999643         999999753

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=97.07  E-value=0.0015  Score=45.53  Aligned_cols=18  Identities=0%  Similarity=0.003  Sum_probs=14.7

Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 033769           94 LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        94 ~l~~~ei~~l~ayl~sl~  111 (112)
                      +..++++.+|++|+++|.
T Consensus       133 ~~~~~~~~Aia~y~~tl~  150 (308)
T 1iqc_A          133 VTIDRITTAIAQFEETLV  150 (308)
T ss_dssp             CCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhhhC
Confidence            334889999999999874

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=96.96  E-value=0.0018  Score=45.77  Aligned_cols=21  Identities=29%  Similarity=0.627  Sum_probs=17.3

Q ss_pred             CCHHHHHHHHHh---------hCccccccc
Q 033769           10 GNPKAGEKIFKT---------KCAQCHTVV   30 (112)
Q Consensus        10 ~~~~~G~~lf~~---------~C~~CH~~~   30 (112)
                      ..++.|++||..         .|++||...
T Consensus        43 ~~v~lGk~LF~D~~LS~~~~~SCasCH~~~   72 (338)
T 2c1v_A           43 EKIELGKVLFFDPRMSSSGLISCQTCHNVG   72 (338)
T ss_dssp             HHHHHHHHHHTCGGGSTTSSCCHHHHSBTT
T ss_pred             HHHHHHHHHhcCcccccCCCcchhhcCCcc
Confidence            456899999975         599999864

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=96.76  E-value=0.00014  Score=53.36  Aligned_cols=23  Identities=13%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             CCCHHHHHHHHHhhCcccccccC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~   31 (112)
                      ..++++|++||..+|++||+.++
T Consensus        86 ~~~va~G~eLF~~NCAaCHG~dG  108 (494)
T 1jmx_A           86 LNTVEQFDTQLSETCGRCHSGAR  108 (494)
T ss_dssp             TTCCCCCCHHHHHHHSSSSCSHH
T ss_pred             cchhhhHHHHHhhhhhhcCCccc
Confidence            44567899999999999999875

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=96.71  E-value=0.0052  Score=43.10  Aligned_cols=21  Identities=33%  Similarity=0.714  Sum_probs=17.1

Q ss_pred             CCHHHHHHHHHhh---------Cccccccc
Q 033769           10 GNPKAGEKIFKTK---------CAQCHTVV   30 (112)
Q Consensus        10 ~~~~~G~~lf~~~---------C~~CH~~~   30 (112)
                      ..++.|++||...         |++||..+
T Consensus        29 ~~v~lGk~LF~d~~LS~~~~~sCasCH~~~   58 (323)
T 2vhd_A           29 QQRELGKKLFFDPRLSRSHVLSCNTCHNVG   58 (323)
T ss_dssp             HHHHHHHHHHTCGGGSSSSCCCHHHHSCGG
T ss_pred             HHHHHHHHHhcCccccCCCCcchhhcCCCc
Confidence            4468999999754         99999874

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=96.52  E-value=0.0068  Score=42.52  Aligned_cols=21  Identities=24%  Similarity=0.656  Sum_probs=16.5

Q ss_pred             CCHHHHHHHHHh---------hCccccccc
Q 033769           10 GNPKAGEKIFKT---------KCAQCHTVV   30 (112)
Q Consensus        10 ~~~~~G~~lf~~---------~C~~CH~~~   30 (112)
                      +.++-|+.||-.         .|++||...
T Consensus        25 ~kv~LGk~LFfD~rLS~~~~~SCasCH~p~   54 (320)
T 3o5c_A           25 EKVELGKMLFFEPRLSKSGFISCNSCHNLS   54 (320)
T ss_dssp             HHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred             HHHHHHHHHhCCcccCCCCCCCccccCCcc
Confidence            446899999953         399999765

>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}

Probab=95.97  E-value=0.014  Score=36.20  Aligned_cols=16  Identities=25%  Similarity=0.756  Sum_probs=13.3

Q ss_pred             HHHHHHhhCccccccc
Q 033769           15 GEKIFKTKCAQCHTVV   30 (112)
Q Consensus        15 G~~lf~~~C~~CH~~~   30 (112)
                      ++.+|...|++||...
T Consensus        16 ~~~~y~~~C~~CH~a~   31 (139)
T 2fw5_A           16 TDPLTRTECSACHMAY   31 (139)
T ss_dssp             CCHHHHHHTTSSSCCC
T ss_pred             cHHHHHHHHHhccCCC
Confidence            4678999999999864

>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}

Probab=95.94  E-value=0.024  Score=34.47  Aligned_cols=15  Identities=27%  Similarity=0.831  Sum_probs=12.6

Q ss_pred             HHHHHhhCccccccc
Q 033769           16 EKIFKTKCAQCHTVV   30 (112)
Q Consensus        16 ~~lf~~~C~~CH~~~   30 (112)
                      +.+|...|++||...
T Consensus         6 ~~~y~~~C~~CH~a~   20 (125)
T 2fwt_A            6 DPLTRTECSACHMAY   20 (125)
T ss_dssp             CHHHHHHTSSSSCCC
T ss_pred             HHHHHHHHHhccCCC
Confidence            568999999999864

>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}

Probab=93.98  E-value=0.18  Score=31.46  Aligned_cols=13  Identities=23%  Similarity=0.830  Sum_probs=10.8

Q ss_pred             HHHhhCccccccc
Q 033769           18 IFKTKCAQCHTVV   30 (112)
Q Consensus        18 lf~~~C~~CH~~~   30 (112)
                      .|.+.|++||-..
T Consensus        14 ~Y~~eCgsCH~Ay   26 (148)
T 3u99_A           14 EYTAECGSCHMAY   26 (148)
T ss_dssp             HHHHHHSSSSCCC
T ss_pred             HHHHHHHhCCccc
Confidence            5888899999754

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=92.05  E-value=0.034  Score=39.37  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=17.7

Q ss_pred             CCHHHHHHHHHh---------hCcccccccC
Q 033769           10 GNPKAGEKIFKT---------KCAQCHTVVK   31 (112)
Q Consensus        10 ~~~~~G~~lf~~---------~C~~CH~~~~   31 (112)
                      ..++.|++||..         .|++||..+.
T Consensus        51 ~~v~lG~~LF~d~rLS~~~~~sCasCH~~~~   81 (345)
T 3hq9_A           51 VKVELGKMLYFDPRLSASHLISCNTCHNVGL   81 (345)
T ss_dssp             HHHHHHHHHHHCGGGSTTSCCCHHHHSBTTT
T ss_pred             HHHHHHHHHhCCcccCCCCCCchhhcCChhh
Confidence            346899999975         5999999753

>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*

Probab=91.64  E-value=0.021  Score=41.91  Aligned_cols=21  Identities=14%  Similarity=0.487  Sum_probs=16.7

Q ss_pred             CCHHHHHHHHHhhCccccccc
Q 033769           10 GNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      .+...|.++|.++|+.||...
T Consensus        87 ~~~~~ggelfr~nCA~CHn~A  107 (489)
T 1pby_A           87 AWDEGPDTSMTQTCGRCHSYA  107 (489)
T ss_dssp             CCCCCSSHHHHHHHSSSSCTH
T ss_pred             CcccCchhhHHhhHhhhCCch
Confidence            355567889999999999864

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=90.86  E-value=0.065  Score=37.55  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHh---------hCccccccc
Q 033769           10 GNPKAGEKIFKT---------KCAQCHTVV   30 (112)
Q Consensus        10 ~~~~~G~~lf~~---------~C~~CH~~~   30 (112)
                      ..++.|++||..         .|++||...
T Consensus        29 ~~v~lGk~LF~D~~LS~~~~~sCasCH~~~   58 (326)
T 1nml_A           29 AKVELGKMEFFEPRLSSSHLISCNTCHNVG   58 (326)
T ss_dssp             HHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred             HHHHHHHHHhcCcccccCCCccchhcCCcc
Confidence            346899999964         499999864

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=86.15  E-value=0.17  Score=35.72  Aligned_cols=20  Identities=30%  Similarity=0.667  Sum_probs=15.2

Q ss_pred             CHHHHHHHHHh---------hCccccccc
Q 033769           11 NPKAGEKIFKT---------KCAQCHTVV   30 (112)
Q Consensus        11 ~~~~G~~lf~~---------~C~~CH~~~   30 (112)
                      .++-|++||-.         .|++||...
T Consensus        47 kv~LGr~LFfD~~LS~~~~~SCASCH~~~   75 (341)
T 4aan_A           47 RVELGRMLFFDPRLSASHLISCNTCHNVG   75 (341)
T ss_dssp             HHHHHHHHHHCGGGSTTSCCCHHHHSBGG
T ss_pred             HHHHHHHHhcCcccCCCcCCCccccCCcc
Confidence            36789999942         499999754

>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*

Probab=84.98  E-value=0.2  Score=35.85  Aligned_cols=22  Identities=27%  Similarity=0.680  Sum_probs=16.5

Q ss_pred             CCHHHHHHHHHh---------hCcccccccC
Q 033769           10 GNPKAGEKIFKT---------KCAQCHTVVK   31 (112)
Q Consensus        10 ~~~~~G~~lf~~---------~C~~CH~~~~   31 (112)
                      +.++-|+.||-.         .|++||....
T Consensus         9 ~kv~LGk~LFfD~rLS~~~~iSCaSCH~p~~   39 (373)
T 3sjl_A            9 ALAALGAQLFVDPALSRNATQSCATCHDPAR   39 (373)
T ss_dssp             HHHHHHHHHHTCGGGSTTSCCCHHHHSBGGG
T ss_pred             HHHHHHHHHhCCCccCCCCCcCchhhCCccc
Confidence            346789999931         4999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1ccra_	111	a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embr	2e-47
d1ycca_	108	a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's y	7e-44
d1co6a_	107	a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas virid	2e-41
d1hroa_	105	a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis	6e-39
d1jdla_	118	a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenu	2e-38
d1ql3a_	99	a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrifi	1e-37
d1qn2a_	99	a.3.1.1 (A:) Cytochrome ch {Methylobacterium extor	5e-36
d1lfma_	103	a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin t	7e-35
d3c2ca_	112	a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum	2e-31
d1cota_	121	a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrifica	2e-28
d1vyda_	116	a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus	2e-27
d1cxca_	124	a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroide	1e-24
d1i8oa_	114	a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palus	2e-23
d1h32b_	138	a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rho	9e-12
d1ynra1	80	a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter	3e-07
d1mz4a_	131	a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus	1e-06
d1f1ca_	129	a.3.1.1 (A:) Photosystem II associated cytochrome	1e-06
d1e29a_	135	a.3.1.1 (A:) Photosystem II associated cytochrome	2e-06
d1cora_	82	a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri	9e-06
d1kb0a1	97	a.3.1.6 (A:579-675) Quinoprotein alcohol dehydroge	1e-04
d1f1fa_	88	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	4e-04
d1cc5a_	83	a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii	5e-04
d1ls9a_	91	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	0.001
d1c75a_	71	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	0.002
d1m70a1	92	a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutze	0.002
d1gdva_	85	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	0.002
d1cyja_	90	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	0.004
d1ctja_	89	a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c5	0.004

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]} Length = 111

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

 Score =  145 bits (367), Expect = 2e-47
 Identities = 101/111 (90%), Positives = 106/111 (95%)

Query: 2   ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF EAPPGNPKAGEKIFKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTPGYSYS A+
Sbjct: 1   ASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTAD 60

Query: 62  KGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
           K MAVIWEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct: 61  KNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 111

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 108

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  136 bits (344), Expect = 7e-44
 Identities = 62/106 (58%), Positives = 75/106 (70%)

Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           E   G+ K G  +FKT+C QCHTV KG  HK GPNL+G+FGR SG   GYSY+ AN    
Sbjct: 2   EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKN 61

Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 111
           V+W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++ 
Sbjct: 62  VLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKAC 107

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]} Length = 107

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

 Score =  130 bits (328), Expect = 2e-41
 Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 12  PKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEK 71
             +GE++FK +C  CH++  GA +K GP LNGLFGR SGT  G++YS ANK   + W E+
Sbjct: 3   AASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEE 61

Query: 72  TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
              +Y+ +PK  IPGTKM+F G+K  Q  +DLIAY+K+  A
Sbjct: 62  VFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]} Length = 105

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

 Score =  124 bits (311), Expect = 6e-39
 Identities = 51/102 (50%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 7   APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAV 66
           APPG+P  G+ +F T C  CHT +KG  +K GP+L G+ GR SG  PGY+YS AN    +
Sbjct: 2   APPGDPVEGKHLFHTICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGI 60

Query: 67  IWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           +W    L+ Y+ +P+K +PGTKM +PG   PQ RAD+IAYL+
Sbjct: 61  VWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 102

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]} Length = 118

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

 Score =  122 bits (308), Expect = 2e-38
 Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 19/117 (16%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA---V 66
           G+P  GE +FK KC  CH V   A +  GP L G+  RQ+GT PG++YSA N       +
Sbjct: 1   GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGL 59

Query: 67  IWEEKTLYDYLLNPKKYIP--------------GTKMVFPGLKKPQDRADLIAYLKE 109
            W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLK+
Sbjct: 60  HWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQ 115

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]} Length = 99

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

 Score =  120 bits (303), Expect = 1e-37
 Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
           +P AGEK+F  KC  CH +        GP+LNG+ GR      G++YS   K     W  
Sbjct: 2   DPAAGEKVFG-KCKACHKLDGN--DGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTP 58

Query: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
           + L ++L NPK  + GTKM F GL K +DRA+LIAYL+ 
Sbjct: 59  EALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEG 97

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]} Length = 99

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

 Score =  116 bits (291), Expect = 5e-36
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 5/100 (5%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTT-PGYSYSAANKGMAVIW 68
           G+  AGEK F   C  CH   K   +  GP L G+ G ++G    GY++S A K   + W
Sbjct: 2   GDAAAGEKAFA-PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTW 57

Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
           ++  L  +L +PKK +PGTKMVFPG+  P+   D+IAYLK
Sbjct: 58  DQADLKQWLADPKKKVPGTKMVFPGISDPKKVDDIIAYLK 97

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]} Length = 103

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

 Score =  113 bits (284), Expect = 7e-35
 Identities = 60/103 (58%), Positives = 74/103 (71%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+   G+K F  KCAQCHTV  G  HK GPNL GLFGR++G   GYSY+ ANK   ++W 
Sbjct: 1   GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWN 60

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112
             TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct: 61  NDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]} Length = 112

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

 Score =  105 bits (262), Expect = 2e-31
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 13/110 (11%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA---V 66
           G+  AGEK+ K KC  CHT  +G  +K GPNL G+F   +     Y+YS +   M    +
Sbjct: 2   GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGL 60

Query: 67  IWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 108
            W E  L  Y+ NPK ++          +KM F  L K  +  ++IAYLK
Sbjct: 61  TWTEANLAAYVKNPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLK 109

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]} Length = 121

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

 Score = 98.0 bits (243), Expect = 2e-28
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 23/122 (18%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSAA--- 60
           G+   GEK F  KC  CH +          G K GPNL G+ GR+  +  G+ Y      
Sbjct: 2   GDAAKGEKEFN-KCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILE 60

Query: 61  --NKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKES 110
              K   + W E  L +Y+ +PK ++          TKM F   K  +++AD++A+L ++
Sbjct: 61  VAEKNPDLTWTEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQN 117

Query: 111 TA 112
           + 
Sbjct: 118 SP 119

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]} Length = 116

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 95.2 bits (236), Expect = 2e-27
 Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 21/119 (17%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVK------GAGHKQGPNLNGLFGRQSGTTPGYSYS---AA 60
           G+   GEK F  KC  CH+++         G K GPNL G+ GR +GT P + Y     A
Sbjct: 1   GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVA 59

Query: 61  NKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKEST 111
                  W E+ +  Y+ +P  ++          T+M F      +   D+ AYL    
Sbjct: 60  LGASGFAWTEEDIATYVKDPGAFLKEKLDDKKAKTEMAFKLA---KGGEDVAAYLASVV 115

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]} Length = 124

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 88.4 bits (218), Expect = 1e-24
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 21/123 (17%)

Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAG-------HKQGPNLNGLFGRQSGTTPGYSYS--- 58
            G+P+AG K F  +C  CH +V  +G        K GPNL G+ GR +GT   +      
Sbjct: 2   EGDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEG 60

Query: 59  -AANKGMAVIWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKE 109
                   + W+E+    Y+ +P K++           KM F  LKK  D  ++ AYL++
Sbjct: 61  MKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQ 119

Query: 110 STA 112
              
Sbjct: 120 VAV 122

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 114

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 85.3 bits (210), Expect = 2e-23
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 22/114 (19%)

Query: 12  PKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIW 68
            KAGE +FK +C  CH       +  GP L G+ GR++GT  G++YS  N       ++W
Sbjct: 3   AKAGEAVFK-QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVW 58

Query: 69  EEKTLYDYLLNPKKYIPG--------------TKMVFPGLKKPQDRADLIAYLK 108
               +  YL +P  ++                TKM F  L   Q R D++AYL 
Sbjct: 59  TADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLA 111

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]} Length = 138

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

 Score = 55.7 bits (133), Expect = 9e-12
 Identities = 22/129 (17%), Positives = 35/129 (27%), Gaps = 43/129 (33%)

Query: 7   APPGNPKAGEKIFKTK----CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62
             PG+P  G ++   +    C  CH V + A  +                       +  
Sbjct: 22  DAPGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGT----------------VGPSLD 65

Query: 63  GMAVIWEEKTLYDYLLNPKKYIPGTK-----------------------MVFPGLKKPQD 99
           G+A  + E  +   L+N K   P T                             L     
Sbjct: 66  GVAARYPEAMIRGILVNSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQ 125

Query: 100 RADLIAYLK 108
             D++AYL 
Sbjct: 126 IEDVVAYLM 134

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]} Length = 80

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

 Score = 42.6 bits (99), Expect = 3e-07
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 19/94 (20%)

Query: 16  EKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLY 74
           E++ K K C  CH +      K GP    +  + +G                      L 
Sbjct: 2   EQLAKQKGCMACHDL---KAKKVGPAYADVAKKYAGR---------------KDAVDYLA 43

Query: 75  DYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
             +      + G+  + P      +   L  ++ 
Sbjct: 44  GKIKKGGSGVWGSVPMPPQNVTDAEAKQLAQWIL 77

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]} Length = 131

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

 Score = 41.9 bits (97), Expect = 1e-06
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 4/102 (3%)

Query: 7   APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN-KGMA 65
                   G+++F+  CA CH    G   K  P+L+      +  TP           M 
Sbjct: 21  LTEKQYLEGKRLFQYACASCHV---GGITKTNPSLDLRTETLALATPPRDNIEGLVDYMK 77

Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
                    +                      +D   +  ++
Sbjct: 78  NPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHI 119

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]} Length = 129

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

 Score = 41.9 bits (97), Expect = 1e-06
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 4/100 (4%)

Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN-KGMAVI 67
               K G+++F   CAQCH        +  P++N      +  TP     AA    +   
Sbjct: 21  LKEIKKGQQVFNAACAQCHA---LGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNP 77

Query: 68  WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 107
                  +                       D  ++  Y+
Sbjct: 78  TTYDGFVEISELHPSLKSSDIFPKMRNISEDDLYNVAGYI 117

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 135

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

 Score = 41.4 bits (96), Expect = 2e-06
 Identities = 17/101 (16%), Positives = 22/101 (21%), Gaps = 2/101 (1%)

Query: 9   PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIW 68
                 G+KIF   C QCH    G          GL           +  A  + +    
Sbjct: 23  ARQFTNGQKIFVDTCTQCHLQ--GKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPK 80

Query: 69  EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
                 DY                      D  D+  Y   
Sbjct: 81  SYDGEDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLI 121

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]} Length = 82

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 38.8 bits (89), Expect = 9e-06
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 19/95 (20%)

Query: 15  GEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTL 73
           GE +FK+K CA CH++        GP    +  + +G                      L
Sbjct: 3   GEALFKSKPCAACHSI---DAKLVGPAFKEVAAKYAGQD---------------GAADLL 44

Query: 74  YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 108
             ++ N  + + G   + P     ++   L  ++ 
Sbjct: 45  AGHIKNGSQGVWGPIPMPPNPVTEEEAKILAEWIL 79

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 97

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

 Score = 36.0 bits (82), Expect = 1e-04
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 22/104 (21%)

Query: 6   EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMA 65
           +  P   +AG  ++   C  CH V    G  +G N+  L G    +      +   KG  
Sbjct: 9   KYDPAKVEAGTMLYVANCVFCHGV---PGVDRGGNIPNL-GYMDASYIENLPNFVFKGP- 63

Query: 66  VIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
                             +      F G     D   L A+++ 
Sbjct: 64  -----------------AMVRGMPDFTGKLSGDDVESLKAFIQG 90

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]} Length = 88

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

 Score = 34.4 bits (78), Expect = 4e-04
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 17/96 (17%)

Query: 14  AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTL 73
           AG  +F   CA CH              N +   ++ +    +          +     +
Sbjct: 4   AGASVFSANCAACH----------MGGRNVIVANKTLSKSDLAKYLKGFDDDAVAA---V 50

Query: 74  YDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
              + N K  +PG    F G   P    D+ AY+ +
Sbjct: 51  AYQVTNGKNAMPG----FNGRLSPLQIEDVAAYVVD 82

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]} Length = 83

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

 Score = 34.0 bits (77), Expect = 5e-04
 Identities = 12/100 (12%), Positives = 20/100 (20%), Gaps = 23/100 (23%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G  ++G+ +    C  CH        K G +                            +
Sbjct: 2   GGARSGDDVVAKYCNACHGTGLLNAPKVGDSAAW---------------------KTRAD 40

Query: 70  EKTLYDYLLNPKKYIPGTKMVFPGLKK--PQDRADLIAYL 107
            K   D LL                      +    I  +
Sbjct: 41  AKGGLDGLLAQSLSGLNAMPPKGTCADCSDDELKAAIGKM 80

>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]} Length = 91

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Green alga (Cladophora glomerata) [TaxId: 162068]

 Score = 32.9 bits (74), Expect = 0.001
 Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 19/98 (19%)

Query: 13  KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKT 72
             G+K+F   CA CH             L      +                    E   
Sbjct: 7   ADGKKVFAGNCAACHL-GGNNSVLADKTLKKDAIEKY------------------LEGGL 47

Query: 73  LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKES 110
             + +        G    +       D   +  Y+ + 
Sbjct: 48  TLEAIKYQVNNGKGAMPAWADRLDEDDIEAVSNYVYDQ 85

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]} Length = 71

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 28/95 (29%)

Query: 15  GEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLY 74
            E + + KC  CH             ++                         + E+ + 
Sbjct: 3   AEAVVQQKCISCHGGDLTGASAP--AIDKAGAN--------------------YSEEEIL 40

Query: 75  DYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
           D +LN +  +PG         K  +   + A+L E
Sbjct: 41  DIILNGQGGMPGGIA------KGAEAEAVAAWLAE 69

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]} Length = 92

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 16/100 (16%)

Query: 10  GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWE 69
           G+ +AG+      C  CH V   +     P L G           Y           + +
Sbjct: 2   GDAEAGQGKVAV-CGACHGVDGNSPAPNFPKLAGQG-------ERYLLKQ-------LQD 46

Query: 70  EKTLYDYLLNPKKYIPGTKMV-FPGLKKPQDRADLIAYLK 108
            K                +M         QD  D+ AY  
Sbjct: 47  IKAGSTPGAPEGVGRKVLEMTGMLDPLSDQDLEDIAAYFS 86

>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]} Length = 85

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Red alga (Porphyra yezoensis) [TaxId: 2788]

 Score = 32.5 bits (73), Expect = 0.002
 Identities = 15/99 (15%), Positives = 22/99 (22%), Gaps = 21/99 (21%)

Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
           +   GEK+F   CA CH             L       +                     
Sbjct: 2   DLDNGEKVFSANCAACHA-GGNNAIMPDKTLKKDVLEANSMNT----------------- 43

Query: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
               D +    +        F G    +D  D   Y+  
Sbjct: 44  ---IDAITYQVQNGKNAMPAFGGRLVDEDIEDAANYVLS 79

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 90

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 32.1 bits (72), Expect = 0.004
 Identities = 11/97 (11%), Positives = 22/97 (22%), Gaps = 19/97 (19%)

Query: 13  KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKT 72
             G ++F   CA CH      G         L            +   +    V      
Sbjct: 4   ALGAQVFNGNCAACH----MGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQV------ 53

Query: 73  LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
                    +   G    +      ++   +  Y+ +
Sbjct: 54  ---------ENGKGAMPAWADRLSEEEIQAVAEYVFK 81

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]} Length = 89

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

 Score = 31.7 bits (71), Expect = 0.004
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 19/99 (19%)

Query: 11  NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEE 70
           +   G+ +F   CA CH                  G           +A  + +   +  
Sbjct: 3   DLALGKAVFDGNCAACH---------------AGGGNNVIPDHTLQKAAIEQFLDGGFNI 47

Query: 71  KTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE 109
           + +   + N K  +P     + G     + A + AY+ +
Sbjct: 48  EAIVYQIENGKGAMPA----WDGRLDEDEIAGVAAYVYD 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1ycca_	108	Mitochondrial cytochrome c {Baker's yeast (Sacchar	99.97
d1ccra_	111	Mitochondrial cytochrome c {Rice embryos (Oryza sa	99.97
d1hroa_	105	Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]	99.97
d1co6a_	107	Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10	99.96
d1ql3a_	99	Cytochrome c552 {Paracoccus denitrificans [TaxId:	99.96
d1qn2a_	99	Cytochrome ch {Methylobacterium extorquens [TaxId:	99.95
d1lfma_	103	Mitochondrial cytochrome c {Bluefin tuna (Thunnus	99.95
d1jdla_	118	Cytochrome c2 {Rhodospirillum centenum [TaxId: 340	99.95
d3c2ca_	112	Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]	99.93
d1i8oa_	114	Cytochrome c2 {Rhodopseudomonas palustris [TaxId:	99.92
d1vyda_	116	Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061	99.91
d1cxca_	124	Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 106	99.89
d1cota_	121	Cytochrome c2 {Paracoccus denitrificans [TaxId: 26	99.89
d1h32b_	138	Mono-heme c-type cytochrome SoxX {Rhodovulum sulfi	99.81
d1c75a_	71	Cytochrome c6 (synonym: cytochrome c553) {Bacillus	99.78
d1ynra1	80	Cytochrome c552 {Hydrogenobacter thermophilus [Tax	99.77
d1cnoa_	86	Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]	99.77
d1c6sa_	87	Cytochrome c6 (synonym: cytochrome c553) {Cyanobac	99.76
d1cora_	82	Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]	99.76
d351ca_	82	Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 28	99.75
d1kb0a1	97	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.75
d1wvec1	74	p-Cresol methylhydroxylase, cytochrome c subunit {	99.75
d1kx7a_	81	Mono-heme c-type cytochrome ScyA {Shewanella putre	99.74
d1m70a1	92	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.73
d1nira1	112	N-terminal (heme c) domain of cytochrome cd1-nitri	99.73
d1kv9a1	104	Quinoprotein alcohol dehydrogenase, C-terminal dom	99.73
d2gc4d1	147	Cytochrome c551 {Paracoccus denitrificans [TaxId:	99.72
d1c53a_	79	Cytochrome c6 (synonym: cytochrome c553) {Desulfov	99.72
d1qksa1	127	N-terminal (heme c) domain of cytochrome cd1-nitri	99.7
d1ctja_	89	Cytochrome c6 (synonym: cytochrome c553) {Monoraph	99.7
d1gdva_	85	Cytochrome c6 (synonym: cytochrome c553) {Red alga	99.7
d1cc5a_	83	Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]	99.68
d1cyja_	90	Cytochrome c6 (synonym: cytochrome c553) {Chlamydo	99.68
d1f1fa_	88	Cytochrome c6 (synonym: cytochrome c553) {Arthrosp	99.68
d1c52a_	131	Cytochrome c552 {Thermus thermophilus [TaxId: 274]	99.66
d1fcdc2	94	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.66
d2c8sa1	149	Cytochrome c-L (MoxG) {Methylobacterium extorquens	99.65
d1a56a_	81	Cytochrome c552 {Nitrosomonas europaea [TaxId: 915	99.65
d1ls9a_	91	Cytochrome c6 (synonym: cytochrome c553) {Green al	99.65
d1fcdc1	80	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	99.64
d1f1ca_	129	Photosystem II associated cytochrome c549 {Arthros	99.64
d1e29a_	135	Photosystem II associated cytochrome c549 {Synecho	99.63
d1mz4a_	131	Cytochrome c550 {Thermosynechococcus elongatus [Ta	99.63
d1gksa_	78	Cytochrome c551 {Ectothiorhodospira halophila [Tax	99.59
d1h1oa2	90	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	99.56
d1m70a2	98	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	99.51
d1h1oa1	82	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	99.39
d1nmla2	160	Di-heme cytochrome c peroxidase {Pseudomonas nauti	98.97
d1eb7a2	159	Di-heme cytochrome c peroxidase {Pseudomonas aerug	98.91
d1iqca2	158	Di-heme cytochrome c peroxidase {Nitrosomonas euro	98.86
d1pbya1	85	Quinohemoprotein amine dehydrogenase A chain, doma	98.31
d1jmxa1	84	Quinohemoprotein amine dehydrogenase A chain, doma	98.16
d1gu2a_	124	Cytochrome c'' {Methylophilus methylotrophus, stra	98.11
d1dw0a_	112	SHP, an oxygen binding cytochrome c {Rhodobacter s	98.06
d1h32a2	111	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	97.71
d1ppjd1	195	Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99	97.55
d3cx5d1	199	Cytochrome bc1 domain {Baker's yeast (Saccharomyce	97.53
d1iqca1	150	Di-heme cytochrome c peroxidase {Nitrosomonas euro	96.8
d1h32a1	150	Di-heme cytochrome c SoxA {Rhodovulum sulfidophilu	96.27
d1nmla1	166	Di-heme cytochrome c peroxidase {Pseudomonas nauti	93.16
d1eb7a1	164	Di-heme cytochrome c peroxidase {Pseudomonas aerug	92.8
d1pbya2	80	Quinohemoprotein amine dehydrogenase A chain, doma	88.97
d1jmxa2	77	Quinohemoprotein amine dehydrogenase A chain, doma	87.68

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.9e-32  Score=163.21  Aligned_cols=107  Identities=58%  Similarity=1.039  Sum_probs=99.3

Q ss_pred             CCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC
Q 033769            6 EAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP   85 (112)
Q Consensus         6 ~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~   85 (112)
                      ..+++|+++|++||..+|++||.++.++.+.+||+|.++.+|..+..++|.|+..+...+..|+.+.|..||++|....|
T Consensus         2 ~~~~gDa~~G~~lF~~~C~~CH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~ys~~l~~~~~~W~~~~L~~~l~~P~~~~p   81 (108)
T d1ycca_           2 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIP   81 (108)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHST
T ss_pred             CcCccCHHHHHHHHHHhChhhCcCCCCCCcccccccCCcccCcccccCCcccCHHHhhccccCCHHHHHHHHHchhccCC
Confidence            35789999999999989999999976566789999999999999999999999988889999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           86 GTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        86 ~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ++.|+|.++++++|+++||+||+++++
T Consensus        82 gt~M~~~gi~~~~d~~~liaYLks~s~  108 (108)
T d1ycca_          82 GTKMAFGGLKKEKDRNDLITYLKKACE  108 (108)
T ss_dssp             TCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999899999999999999985

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

Probab=99.97  E-value=4e-32  Score=164.00  Aligned_cols=111  Identities=91%  Similarity=1.466  Sum_probs=102.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCC
Q 033769            2 ASFEEAPPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPK   81 (112)
Q Consensus         2 ~~~~~~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   81 (112)
                      ++|...+.+|+++|++||+.+|++||+++.+++..+||+|.++.+|..+..++|.|+..+...++.|+.++|..||.+|.
T Consensus         1 a~~~~~p~gD~~~G~~lF~~~CaaCH~i~~~~~~~~GP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~L~~~l~~P~   80 (111)
T d1ccra_           1 ASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPK   80 (111)
T ss_dssp             CCGGGSCCCCHHHHHHHHHHHTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHH
T ss_pred             CCcccCCCCCHHHHHHHHHhcCHhhCCcCCCCcchhHHHHHhhhcccccccccccccHHHHhccccCCHHHHHHHHHCcc
Confidence            35777889999999999999999999997656678999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           82 KYIPGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        82 ~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ...|+++|+|.++++++|++||++||++++.
T Consensus        81 ~~~~g~~M~~~~~~~~~d~~dliaYLk~~t~  111 (111)
T d1ccra_          81 KYIPGTKMVFPGLKKPQERADLISYLKEATS  111 (111)
T ss_dssp             HHSTTCCCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999899999999999999874

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

Probab=99.97  E-value=1.2e-31  Score=160.36  Aligned_cols=104  Identities=48%  Similarity=0.980  Sum_probs=96.0

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ++++|+++|++||+++|++||.+.+ +++.+||+|.++.+|..+..++|.|++.+...+..|+.+.|..||++|....|+
T Consensus         2 Ap~gD~~~G~~lF~~~C~~CH~~~~-~~~~~GP~L~gi~~R~~g~~~~~~ys~~l~~~~~~~~~~~L~~~l~~P~~~~pg   80 (105)
T d1hroa_           2 APPGDPVEGKHLFHTICITCHTDIK-GANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPG   80 (105)
T ss_dssp             CCCCCHHHHHHHHTTTGGGTCCSST-TCBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTT
T ss_pred             CCCcCHHHHHHHHHHhhHHhCCCCC-CCCccccccchhcccccccccCcccCHHHHhccccccHHHHHHHHHCccccCCC
Confidence            4568999999999989999999864 456789999999999999999999999888899999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +.|+|.++.+++|++|||+||+||+
T Consensus        81 t~M~~~gl~~~~~~~dliaYL~sLK  105 (105)
T d1hroa_          81 TKMGYPGQPDPQKRADIIAYLETLK  105 (105)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            9999999998999999999999985

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=99.96  E-value=2.1e-30  Score=155.16  Aligned_cols=102  Identities=49%  Similarity=0.929  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      .|+++|+++|+ +|.+||.++.++...+||+|.++++|..+..++|.|++.+...+..|+.+.|..||.+|....|++.|
T Consensus         1 ~Da~~G~~~F~-~C~~CH~~~~~~~~~~GP~L~gi~gr~~g~~~~~~ys~al~~~~~~w~~~~L~~~l~~P~~~~pGt~M   79 (107)
T d1co6a_           1 QDAASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKM   79 (107)
T ss_dssp             CCHHHHHHHHH-HHHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             CcHHHHHHHHH-hccccCccCCCCCCCccccccCccCcccccccccccCHHHhhccccCCHHHHHHHHhChHhhCCCCCC
Confidence            37889999997 69999999866667899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           90 VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      +|.++.+++|+++||+||++|+.
T Consensus        80 ~~~gl~~~~d~~~liAYL~~l~~  102 (107)
T d1co6a_          80 IFAGVKDEQKVSDLIAYIKQFNA  102 (107)
T ss_dssp             CCCCCCCHHHHHHHHHHHHTBCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcc
Confidence            99999889999999999999863

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.6e-29  Score=148.62  Aligned_cols=99  Identities=43%  Similarity=0.795  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +|+++|+++|+ .|++||.+++  ...+||.|.++.++..+..++|.|+..++..+..|+.+.|..||++|...+|++.|
T Consensus         1 AD~~~G~~~f~-~C~~CHs~~~--~~~~GP~L~gi~gr~~~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt~M   77 (99)
T d1ql3a_           1 ADPAAGEKVFG-KCKACHKLDG--NDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKM   77 (99)
T ss_dssp             CCHHHHHHHGG-GTTTTCCSSS--CCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHH-HHHhhCCcCC--CCCCCCCccCccCCcccccccccccHHHHhcccccCHHHHHHHHhChHhhCCCCCC
Confidence            47899999996 5999999964  46799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|.++.+++|+++||+||++++
T Consensus        78 ~~~gl~~~~d~~dliaYLks~~   99 (99)
T d1ql3a_          78 AFAGLPKIEDRANLIAYLEGQQ   99 (99)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHhhcC
Confidence            9999988999999999999974

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.95  E-value=1.1e-28  Score=145.69  Aligned_cols=97  Identities=44%  Similarity=0.889  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCC-CCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      .+|+++|++||. +|++||.++.   +.+||+|.++.+|..+. .++|.|+..+...++.|+.+.|..||++|....|++
T Consensus         1 ~GDa~~G~~lF~-~C~~CH~i~~---~~~GP~L~gi~~r~~g~~~~~~~ys~~~~~~~~~w~~~~L~~~l~~P~~~~pgt   76 (99)
T d1qn2a_           1 EGDAAAGEKAFA-PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGT   76 (99)
T ss_dssp             CCCHHHHHHHTG-GGGGTCCSSS---CSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTC
T ss_pred             CCCHHHHHHHHH-hHHHHcCCcc---cCcCCccccccCCccccccCCccccHHHHhcCccccHHHHHHHHHCccccCCCC
Confidence            378999999995 6999999863   56899999999998876 567899999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHh
Q 033769           88 KMVFPGLKKPQDRADLIAYLKE  109 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~s  109 (112)
                      .|+|.++.+++|+++||+||+|
T Consensus        77 ~M~~~gl~~~~d~~dliaYL~T   98 (99)
T d1qn2a_          77 KMVFPGISDPKKVDDIIAYLKT   98 (99)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHcc
Confidence            9999998889999999999997

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

Probab=99.95  E-value=6.1e-28  Score=143.01  Aligned_cols=103  Identities=58%  Similarity=1.066  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +|+++|++||.++|++||+++..+....||.+.++..+.......+.+.......+..|+.+.+..|++++....++++|
T Consensus         1 GD~~~G~~lf~~~C~~CH~~~~~~~~~~g~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~M   80 (103)
T d1lfma_           1 GDVAKGKKTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKM   80 (103)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHCCCBCSHHHHHHHHHCHHHHSTTCSC
T ss_pred             CCHHHHHHHHHccChhccCcccccCCCccccccccccccccccccccccHHHhhcCcccCHHHHHHHHhCcccccCCCCC
Confidence            68999999999899999999876667889999998888776666777777777788899999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           90 VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ++.++++++||+|||+||+|++.
T Consensus        81 ~~~~~ls~~ei~dviAYLkt~s~  103 (103)
T d1lfma_          81 IFAGIKKKGERQDLVAYLKSATS  103 (103)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999974

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

Probab=99.95  E-value=2.1e-28  Score=148.87  Aligned_cols=100  Identities=43%  Similarity=0.833  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccch---hccccceeeCHHHHHHHHhCCCCCC--
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSA---ANKGMAVIWEEKTLYDYLLNPKKYI--   84 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~--   84 (112)
                      +|+++|++||+ .|++||.++.++.+.+||.|.++.+|..+..++|.|+.   .+...++.|+.++|..||++|....  
T Consensus         1 GD~~~G~~vF~-~C~~CH~v~~~~~~~iGP~L~gi~~R~~g~~~g~~Ys~~~~~~~~~g~~W~~e~L~~~l~~P~~~i~~   79 (118)
T d1jdla_           1 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRK   79 (118)
T ss_dssp             CCHHHHHHHGG-GTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHhCCcCCCCCCCCCCcccCccCcccCccccccccHHHHHHHhcCccCCHHHHHHHHHCHHHhhcc
Confidence            68999999996 69999999755667899999999999999999999975   4456889999999999999876533  


Q ss_pred             ------------CCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           85 ------------PGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 ------------~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                  +++||+| ++.+++|+++||+||++|+
T Consensus        80 ~~~~~~~~~~~~~~~~m~~-~l~~~~d~~dliaYL~sl~  117 (118)
T d1jdla_          80 FLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQFS  117 (118)
T ss_dssp             HHHHTTCGGGGSSCCSCCC-CCCCHHHHHHHHHHHGGGC
T ss_pred             ccccccccccCCCCCcccc-cCCCHHHHHHHHHHHHHhC
Confidence                        3677887 5778999999999999986

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.93  E-value=3.4e-26  Score=137.53  Aligned_cols=101  Identities=40%  Similarity=0.717  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhc---cccceeeCHHHHHHHHhCCCCC--
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN---KGMAVIWEEKTLYDYLLNPKKY--   83 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~--   83 (112)
                      .+|+++|++||+ +|++||+++..+....||.|.++.++..+....+.+....   ...+..|+.++|..|+++|...  
T Consensus         1 ~GDa~~G~~lf~-~C~~CH~~~~~~~~~~Gp~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~p~~~~~   79 (112)
T d3c2ca_           1 EGDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVL   79 (112)
T ss_dssp             CCCHHHHHHHGG-GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHhCCCcCCCCccccccccCCccccccccccccccHHHHHhhhccccCCHHHHHHHHHCcHHHhc
Confidence            379999999996 6999999987666778999999999998888888775543   4567899999999999998764  


Q ss_pred             ------CCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           84 ------IPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        84 ------~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                            .++++|++. +++++||+|||+||+||+
T Consensus        80 ~~~~~~~~~~~m~~~-~ls~qdi~divAYL~tLK  112 (112)
T d3c2ca_          80 EKSGDPKAKSKMTFK-LTKDDEIENVIAYLKTLK  112 (112)
T ss_dssp             HHHCCTTCCCSCCCC-CCCHHHHHHHHHHHTTCC
T ss_pred             ccccCCCCCCCCCCC-CCCHHHHHHHHHHHHhcC
Confidence                  456788874 678999999999999985

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=99.92  E-value=9.5e-26  Score=136.23  Aligned_cols=97  Identities=37%  Similarity=0.771  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccch---hccccceeeCHHHHHHHHhCCCCCC--
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSA---ANKGMAVIWEEKTLYDYLLNPKKYI--   84 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~--   84 (112)
                      .|+++|++||+ +|++||.++.   +.+||.|.++.++..+..+++.+..   .+...++.|+.++|..||++|....  
T Consensus         1 ~Da~~G~~lF~-~C~aCH~~~~---~~~GP~l~gi~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~~L~~~i~~p~~~~~g   76 (114)
T d1i8oa_           1 EDAKAGEAVFK-QCMTCHRADK---NMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKK   76 (114)
T ss_dssp             CCHHHHHHHHH-HHTTTCCSSS---CSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHH
T ss_pred             CcHHHHHHHHH-HhHHhcCCCC---CCCCCCccCccccccccccchhhhhHHHHHhccCcccCHHHHHHHHhCcHhhccC
Confidence            47899999996 6999998753   5689999999999888888776643   4455689999999999999887643  


Q ss_pred             ------------CCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           85 ------------PGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 ------------~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                                  +.++|+| ++++++||+|||+||+||+
T Consensus        77 ~~~~~~~~~~~~~~t~M~~-~~l~~~di~dliAYL~sLK  114 (114)
T d1i8oa_          77 FLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLATLK  114 (114)
T ss_dssp             HHHHTTCGGGCCSCCSSCC-CCCCHHHHHHHHHHHHTTC
T ss_pred             cccchhhhhcccCCCcCCc-CCCCHHHHHHHHHHHHHcC
Confidence                        3478888 6788999999999999985

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.91  E-value=1.3e-25  Score=136.10  Aligned_cols=99  Identities=34%  Similarity=0.686  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHhhCcccccccCC------CCCCCCCCCCCccCCCCCCCCCCccch---hccccceeeCHHHHHHHHhCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKG------AGHKQGPNLNGLFGRQSGTTPGYSYSA---ANKGMAVIWEEKTLYDYLLNP   80 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~------~~~~~gP~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~   80 (112)
                      +|+++|++||+ +|++||.++..      +...+||.|.++.+|..+..+.|.++.   .+...+..|+.+.|..||++|
T Consensus         1 GD~a~G~~vf~-~C~~CH~i~~~~~~~~~~~~~~GP~L~gi~~r~~~~~~~~~~s~~~~~~~~~~~~w~~~~L~~~l~~P   79 (116)
T d1vyda_           1 GDAAKGEKEFN-KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDP   79 (116)
T ss_dssp             CCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCH
T ss_pred             CCHHHHHHHHH-HhHHhCCCcCCcccccccccchhhhhcCccccchhhcccchhhhHHHHHHhcCccccHHHHHHHHHCH
Confidence            68999999996 69999998642      235689999999999999999998876   456778999999999999999


Q ss_pred             CCC--------CCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           81 KKY--------IPGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        81 ~~~--------~~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ...        .|++.|+|.++   +|++|||+||++|+|
T Consensus        80 ~~~~~~~~~~~~p~t~M~~~g~---~d~~dliAYL~sL~k  116 (116)
T d1vyda_          80 GAFLKEKLDDKKAKTEMAFKLA---KGGEDVAAYLASVVK  116 (116)
T ss_dssp             HHHHHHHHTCTTCCCSCCCCCS---SCHHHHHHHHHHTCC
T ss_pred             HHHhcccccCCCCCCCCCCCCC---CCHHHHHHHHHHhcC
Confidence            864        37889998775   356699999999986

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.89  E-value=1.2e-23  Score=128.32  Aligned_cols=102  Identities=34%  Similarity=0.710  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHHHhhCcccccccCC-------CCCCCCCCCCCccCCCCCCCCCCccc----hhccccceeeCHHHHHHHH
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKG-------AGHKQGPNLNGLFGRQSGTTPGYSYS----AANKGMAVIWEEKTLYDYL   77 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~-------~~~~~gP~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l   77 (112)
                      .+|+++|++||+ +|++||.+++.       +....+|.|.++..+..+..+.|.+.    ......+..|+.++|..|+
T Consensus         2 ~GD~~~G~~vF~-~Ca~CH~i~~~~~~~~~g~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~   80 (124)
T d1cxca_           2 EGDPEAGAKAFN-QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYV   80 (124)
T ss_dssp             CSCHHHHHHHGG-GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHH
T ss_pred             CCCHHHHHHHHH-hhHhhCCccccCccccccccchhhhhhcccccccccccccchhhHHHHHHHhhccccCCHHHHHHHH
Confidence            589999999995 79999998753       23467899999999888887877643    2334467889999999999


Q ss_pred             hCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           78 LNPKKY--------IPGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        78 ~~~~~~--------~~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      .+|...        .++++|++ ++++++||+|||+||++|+.
T Consensus        81 ~~p~~~~~~~~~~~~~~~~M~~-~~l~~~di~DLiAYL~sl~~  122 (124)
T d1cxca_          81 QDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQVAV  122 (124)
T ss_dssp             HCHHHHHHHHHSCTTCCCSCCC-CCCCHHHHHHHHHHHHHHCC
T ss_pred             hCcHhhhcccccccCCCCCCCC-CCCCHHHHHHHHHHHHHcCC
Confidence            988654        36688997 57789999999999999974

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=9.4e-24  Score=128.64  Aligned_cols=100  Identities=36%  Similarity=0.754  Sum_probs=81.4

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCC------CCCCCCCCCCccCCCCCCCCCCccchhc-----cccceeeCHHHHHHHH
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGA------GHKQGPNLNGLFGRQSGTTPGYSYSAAN-----KGMAVIWEEKTLYDYL   77 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~------~~~~gP~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l   77 (112)
                      .+|+++|++||+ +|++||.++.++      .+.+||.|.++..|..+..++|.++..+     ...++.|+.++|..||
T Consensus         1 ~GDa~~G~~vF~-~C~~CH~~~~~~~~~~~~~~~~GP~L~gi~~r~~~~~~~~~~~~~~~~~~~~~~g~~w~~~~L~~~l   79 (121)
T d1cota_           1 DGDAAKGEKEFN-KCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEADLIEYV   79 (121)
T ss_dssp             CCCHHHHHHHGG-GTTTTCCEECTTSCEEECCCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHH
T ss_pred             CCCHHHHHHHHH-hCcccCccCCCCcccccccchhhHHhcCcccccccccccccchHHHHHHHhhccCCCCCHHHHHHHH
Confidence            378999999995 699999997543      2468999999999999999998876543     3568999999999999


Q ss_pred             hCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHHHhhcC
Q 033769           78 LNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        78 ~~~~~~~--------~~~~m~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      ++|....        |++.|+|   ++++|++|||+||++++.
T Consensus        80 ~~P~~~i~~~~~~~~~~t~M~~---~~~~d~~dliAYLks~~~  119 (121)
T d1cota_          80 TDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQNSP  119 (121)
T ss_dssp             HCHHHHHHHHHTCTTCCCSCCC---CCCSCHHHHHHHHHHTCT
T ss_pred             HCcHHHhccccCCCCCCCCCCC---CCHHHHHHHHHHHHHcCC
Confidence            9987643        4555664   457899999999999863

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=99.81  E-value=1.5e-20  Score=116.34  Aligned_cols=85  Identities=31%  Similarity=0.543  Sum_probs=62.9

Q ss_pred             CCCCHHHHHHHHHh----hCcccccccCCCC----CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhC
Q 033769            8 PPGNPKAGEKIFKT----KCAQCHTVVKGAG----HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLN   79 (112)
Q Consensus         8 ~~~~~~~G~~lf~~----~C~~CH~~~~~~~----~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~   79 (112)
                      .++|+++|++||..    +|.+||.+++.+.    +.+||+|.++..|.                    +.++|..+|.+
T Consensus        23 ~~GDa~~G~~lF~~~~~~~C~aCH~~~~~g~~~~~g~~gP~L~~ig~r~--------------------~~~~l~~~i~~   82 (138)
T d1h32b_          23 APGDPVEGRRLMTDRSVGNCIACHEVTEMADAQFPGTVGPSLDGVAARY--------------------PEAMIRGILVN   82 (138)
T ss_dssp             SCCCHHHHHHHHHCTTTTCGGGTCCCTTC---CCCCSSSCCCTTHHHHS--------------------CHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHhccCCCCcccCCCCCCcCcccccCCcCCccccccccC--------------------CHHHHHHHHhC
Confidence            55899999999975    4999999975432    35799999876543                    67788888876


Q ss_pred             CCCCCCCC----------------------CC-CCCCCCCHHHHHHHHHHHHhhcC
Q 033769           80 PKKYIPGT----------------------KM-VFPGLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        80 ~~~~~~~~----------------------~m-~~~~~l~~~ei~~l~ayl~sl~~  112 (112)
                      |....+++                      +| .+...||++||+||++||+||++
T Consensus        83 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ei~dlvAYL~tL~~  138 (138)
T d1h32b_          83 SKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ  138 (138)
T ss_dssp             HHHHSTTCSSCCTTCCSCCSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC-
T ss_pred             HHhcCCCcccccceeccccccccccccccccccccccCCCHHHHHHHHHHHHHccC
Confidence            65432221                      22 35567899999999999999985

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

Probab=99.78  E-value=2e-19  Score=99.78  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=55.4

Q ss_pred             HHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCCCCC
Q 033769           14 AGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPG   93 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~   93 (112)
                      +|++||.++|+.||+.++.+  .+||+|.++..+.                    +.++|..+|+++...    |++|  
T Consensus         2 ~G~~ly~~~Ca~CHg~~~~G--~~gP~L~~~~~~~--------------------~~~~l~~~i~~G~~~----MP~~--   53 (71)
T d1c75a_           2 DAEAVVQQKCISCHGGDLTG--ASAPAIDKAGANY--------------------SEEEILDIILNGQGG----MPGG--   53 (71)
T ss_dssp             CHHHHHHHHTHHHHCTTSSC--SSSCCCTTGGGTS--------------------CHHHHHHHHHHCBTT----BCSC--
T ss_pred             CHHHHHHHHHHHhCCCcccC--cchhhcccccccc--------------------ChHHHHHHHHhCcCC----CCCC--
Confidence            69999999999999987543  4789998754332                    678899999988643    3344  


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 033769           94 LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        94 ~l~~~ei~~l~ayl~sl~  111 (112)
                      .||++|+++|++||++++
T Consensus        54 ~Ls~~ei~~i~~Yl~~~K   71 (71)
T d1c75a_          54 IAKGAEAEAVAAWLAEKK   71 (71)
T ss_dssp             SSCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            578999999999999874

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

Probab=99.77  E-value=9.9e-20  Score=103.13  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             HHHHHh-hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCCCCCC
Q 033769           16 EKIFKT-KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGL   94 (112)
Q Consensus        16 ~~lf~~-~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~~~~   94 (112)
                      ++||.+ +|++||+.++.   .+||.|.++..++.+..               ...++|.++|++|....++.||++...
T Consensus         2 ~~L~~~~~C~~CH~~~~~---g~gP~~~~l~~~~~~~~---------------~~~~~l~~~i~~p~~~~~~~~~~~~~~   63 (80)
T d1ynra1           2 EQLAKQKGCMACHDLKAK---KVGPAYADVAKKYAGRK---------------DAVDYLAGKIKKGGSGVWGSVPMPPQN   63 (80)
T ss_dssp             HHHHHHHTGGGTCCSSSC---SSSCCHHHHHHHHTTCT---------------THHHHHHHHHHHCBCSSSCSSCBCCCS
T ss_pred             HHHHHcCCcHhhCCCCCC---CCCCCccchhhhccccc---------------hhHHHHHHHHHcccccccccccccccc
Confidence            678987 59999998753   46898887655432211               146689999999988777766644556


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 033769           95 KKPQDRADLIAYLKEST  111 (112)
Q Consensus        95 l~~~ei~~l~ayl~sl~  111 (112)
                      +||+||++|++||+||+
T Consensus        64 lsd~ei~~l~~yi~sLk   80 (80)
T d1ynra1          64 VTDAEAKQLAQWILSIK   80 (80)
T ss_dssp             CCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            78999999999999985

>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.77  E-value=3.3e-20  Score=106.30  Aligned_cols=82  Identities=23%  Similarity=0.205  Sum_probs=57.6

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTK   88 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   88 (112)
                      ++|+++|+++|. .|+.||+.+|.+.....|.|.+....+                    ....|..|....+...+..+
T Consensus         1 AgD~~~Gk~l~~-~Ca~CHg~~G~g~~~~~P~L~g~~~~y--------------------~~~~l~~~~~g~r~~~~~~~   59 (86)
T d1cnoa_           1 AGDIEAGKAKAA-VCAACHGQNGISQVPIYPNLAGQKEQY--------------------LVAALKAYKAGQRQGGQAPV   59 (86)
T ss_dssp             CCCHHHHHHHGG-GTHHHHCTTSCCSSTTSCCCTTCCHHH--------------------HHHHHHHHHTTCBCSTTHHH
T ss_pred             CCCHHHhHHHHH-HHHHhcCcccccccccCcccccchHHH--------------------HHHHHHHHHhccccCCcchh
Confidence            478999999995 699999998776666778887642111                    23445555443333333334


Q ss_pred             C-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           89 M-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        89 m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      | ++...|||+||++|++||.+|+
T Consensus        60 m~~~~~~Lsd~di~~laaYi~slp   83 (86)
T d1cnoa_          60 MQGQATALSDADIANLAAYYASNP   83 (86)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSC
T ss_pred             hHHHHccCCHHHHHHHHHHHHhCC
Confidence            4 5556788999999999999986

>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]

Probab=99.76  E-value=1.8e-18  Score=99.12  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=55.8

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||..+|+.||+.++.+... +|.+.....+...                ..+...+...++++..    .|+
T Consensus         1 Ad~~~G~~ly~~~Ca~CHg~~g~g~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~i~~g~~----~mp   59 (87)
T d1c6sa_           1 ADLANGAKVFSGNCAACHMGGGNVVMA-NKTLKKEALEQFG----------------MYSEDAIIYQVQHGKN----AMP   59 (87)
T ss_dssp             CCHHHHHHHHTTTGGGGCTTTCCSSSS-SCCSSSTTTTTSS----------------CCSHHHHHHHHSSCBT----TBC
T ss_pred             CcHHHHHHHHHHHChhhhhhccccccc-CCCccchhhhhhc----------------cCcHHHHHHHHHcCcc----ccc
Confidence            478999999999999999988654322 2332221111100                0146678888887753    455


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|.+.||++||++|++||.+++
T Consensus        60 ~~~~~Ls~~ei~~v~aYi~~~a   81 (87)
T d1c6sa_          60 AFAGRLTDEQIQDVAAYVLDQA   81 (87)
T ss_dssp             CCTTTSCSHHHHHHHHHHHHHT
T ss_pred             cccCCCCHHHHHHHHHHHHHHH
Confidence            7888899999999999998865

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.76  E-value=1.7e-19  Score=102.51  Aligned_cols=80  Identities=21%  Similarity=0.350  Sum_probs=58.7

Q ss_pred             HHHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-CCCC
Q 033769           13 KAGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-TKMV   90 (112)
Q Consensus        13 ~~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~   90 (112)
                      ++|++||..+ |+.||+.++   ..++|.+..+..+..+..               .+.++|..+|++|.....+ ..||
T Consensus         1 E~Gk~l~~~~~C~~CH~~~~---~g~gp~~~~l~~~~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~Mp   62 (82)
T d1cora_           1 EDGEALFKSKPCAACHSIDA---KLVGPAFKEVAAKYAGQD---------------GAADLLAGHIKNGSQGVWGPIPMP   62 (82)
T ss_dssp             CHHHHHHHHSTHHHHCCSSS---CSSSCCHHHHHHHSTTCT---------------THHHHHHHHHHSCBCSSSSSSCBC
T ss_pred             CchHHHHhhCccHHHhCCcc---cCcCCcchhhhhhccccc---------------hhHHHHHHHHhccccccccccccc
Confidence            3799999986 999999875   346888876554432211               1467899999999775543 4565


Q ss_pred             CCCCCCHHHHHHHHHHHHhhc
Q 033769           91 FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      -.. +||+||++|++||+||+
T Consensus        63 ~~~-lsdeei~~la~Yi~SlK   82 (82)
T d1cora_          63 PNP-VTEEEAKILAEWILSQK   82 (82)
T ss_dssp             CCS-CCHHHHHHHHHHHHSCC
T ss_pred             ccC-CCHHHHHHHHHHHHhcC
Confidence            333 78999999999999985

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=2.6e-19  Score=101.72  Aligned_cols=78  Identities=21%  Similarity=0.339  Sum_probs=58.4

Q ss_pred             HHHHHHHhh-CcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC-CCCC-
Q 033769           14 AGEKIFKTK-CAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG-TKMV-   90 (112)
Q Consensus        14 ~G~~lf~~~-C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~m~-   90 (112)
                      .|+.||+++ |++||+.++   ..++|.|..+..+..+..               .+.++|..+|++|.....+ ..|| 
T Consensus         2 dg~~Lf~~~gC~~CH~~~g---~~~gP~~~~i~~~~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~MP~   63 (82)
T d351ca_           2 DPEVLFKNKGCVACHAIDT---KMVGPAYKDVAAKFAGQA---------------GAEAELAQRIKNGSQGVWGPIPMPP   63 (82)
T ss_dssp             CHHHHHHHTTGGGTBCSSS---BSSSCCHHHHHHHHTTCT---------------THHHHHHHHHHHCBCSSSSSSCBCC
T ss_pred             CHHHHHhhCCchhhcCCcc---cCCCCcchhHHHhcccch---------------hhHHHHHHHHHcccccccccccccc
Confidence            589999987 999999875   457898887654432211               1567899999988765544 3464 


Q ss_pred             CCCCCCHHHHHHHHHHHHhhc
Q 033769           91 FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      | . +||+|+++|++||+||+
T Consensus        64 ~-~-lsd~ei~~la~Yi~SlK   82 (82)
T d351ca_          64 N-A-VSDDEAQTLAKWVLSQK   82 (82)
T ss_dssp             C-S-CCHHHHHHHHHHHHTTC
T ss_pred             c-C-CCHHHHHHHHHHHHhcC
Confidence            5 3 78999999999999985

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.75  E-value=5.3e-19  Score=103.41  Aligned_cols=83  Identities=19%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      ..++++++|++||..+|+.||+.++.+.....|.+.....                     ++.+.+..++.++.... .
T Consensus        10 ~d~~~~~~G~~ly~~~Ca~CHG~~g~g~~~~~~~~~~~~~---------------------~~~~~~~~~i~~g~~~~-~   67 (97)
T d1kb0a1          10 YDPAKVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMV-R   67 (97)
T ss_dssp             CCGGGHHHHHHHHHHHTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGG-G
T ss_pred             CCHHHHHHHHHHHHHHhHHhhCCCCCCCCCcccccccccc---------------------cchHHHHHHHHhccccc-C
Confidence            3456789999999999999999886554444444432210                     13456777777664322 2


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           87 TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .|++|.+.||++||++|++||+++.
T Consensus        68 ~MP~~~~~Ls~~ei~~i~aYl~~~a   92 (97)
T d1kb0a1          68 GMPDFTGKLSGDDVESLKAFIQGTA   92 (97)
T ss_dssp             TCCCCTTTSCTTHHHHHHHHHHHHH
T ss_pred             CCcccccCCCHHHHHHHHHHHHHhc
Confidence            3557888899999999999998763

>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: p-Cresol methylhydroxylase, cytochrome c subunit
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.1e-18  Score=97.54  Aligned_cols=72  Identities=22%  Similarity=0.367  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV   90 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~   90 (112)
                      +...|++||.++|+.||+.++    ..+|.|.+.                      .|+.+.|...|+++...    |++
T Consensus         2 q~~~G~~ly~~~Ca~CHg~~g----~~~p~l~~~----------------------~~~~~~i~~~i~~G~~~----MP~   51 (74)
T d1wvec1           2 QWGSGKNLYDKVCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFRA----MPA   51 (74)
T ss_dssp             CSSSHHHHHHHTTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBTT----BCC
T ss_pred             cHHHHHHHHHHHHHHHhcccC----cchhhcccc----------------------chhHHHHHHHHHhhccc----ccc
Confidence            456899999999999999764    347887642                      13678899999988643    445


Q ss_pred             CC-CCCCHHHHHHHHHHHHhhcC
Q 033769           91 FP-GLKKPQDRADLIAYLKESTA  112 (112)
Q Consensus        91 ~~-~~l~~~ei~~l~ayl~sl~~  112 (112)
                      |. ..+||+|+++|++||++|+.
T Consensus        52 ~~~~~lsd~ei~~l~~Yi~slpA   74 (74)
T d1wvec1          52 FPASYVDDESLTQVAEYLSSLPA   74 (74)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHSCC
T ss_pred             cccccCCHHHHHHHHHHHHhCCC
Confidence            64 46889999999999999863

>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome ScyA
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.74  E-value=2.8e-18  Score=97.24  Aligned_cols=80  Identities=14%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||..+|+.||+.++.+....++..... .+..                  ...+.+...+.++...+|  ++
T Consensus         1 Ad~~~G~~lY~~~Ca~CHg~~~~G~p~~~~~~~~~-~~~~------------------~~~~~~~~~~~~g~~~mp--~~   59 (81)
T d1kx7a_           1 ADLQDAEAIYNKACTVCHSMGVAGAPKSHNTADWE-PRLA------------------KGVDNLVKSVKTGLNAMP--PG   59 (81)
T ss_dssp             CCCSCHHHHHHHTTTSSTTTTCTTCCCSSCSTTTT-TTTT------------------TCSHHHHHHHHHCCSSSC--TT
T ss_pred             CcHHHHHHHHHHHHHHHccCCCCCCCCCCChhhhh-hccc------------------ccHHHHHHHHHhhccccc--cc
Confidence            35678999999999999998764432223222211 0000                  034457777777665433  22


Q ss_pred             CCCCCCCHHHHHHHHHHHHhh
Q 033769           90 VFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl  110 (112)
                      .+...|||+||++|++||+..
T Consensus        60 g~~~~Lsd~ei~~v~~Yi~~a   80 (81)
T d1kx7a_          60 GMCTDCTDEDYKAAIEFMSKA   80 (81)
T ss_dssp             TTCSSCCHHHHHHHHHHHSSC
T ss_pred             ccccCCCHHHHHHHHHHHHhc
Confidence            345678999999999999764

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.73  E-value=3e-18  Score=98.82  Aligned_cols=82  Identities=24%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh---CC---CC
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL---NP---KK   82 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~---~~   82 (112)
                      ++|+++|+++|. .|+.||+.+|.+.....|.+.+....                    +....+..+..   ..   ..
T Consensus         1 Agd~~~G~~l~~-~Ca~CHg~~G~g~~~~~p~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~   59 (92)
T d1m70a1           1 AGDAEAGQGKVA-VCGACHGVDGNSPAPNFPKLAGQGER--------------------YLLKQLQDIKAGSTPGAPEGV   59 (92)
T ss_dssp             CCCHHHHHTTCG-GGHHHHCTTSCCCCTTSCCCTTCCHH--------------------HHHHHHHHHHHHHSTTCCTTS
T ss_pred             CCCHHHhHHHHH-HHHHhCCCcccccchhhccccchhhH--------------------HHHHHHHHhhhhhhhhhhccc
Confidence            478999999997 59999999876655556665542110                    01222333321   11   11


Q ss_pred             CCCCCCC-CCCCCCCHHHHHHHHHHHHhhc
Q 033769           83 YIPGTKM-VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        83 ~~~~~~m-~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .....+| +|...|||+||++|++||++|+
T Consensus        60 ~~~~~~Mp~~~~~Lsd~ei~dl~aYi~sl~   89 (92)
T d1m70a1          60 GRKVLEMTGMLDPLSDQDLEDIAAYFSSQK   89 (92)
T ss_dssp             SCCCGGGTTTTTTCCHHHHHHHHHHHHHSC
T ss_pred             cccccchHHHHhhCCHHHHHHHHHHHHHCC
Confidence            2233456 5888899999999999999986

>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=4.6e-19  Score=106.30  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             CCCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCC
Q 033769            7 APPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPG   86 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~   86 (112)
                      +..++..+|++||.++|+.||+.++.|  ..||+|..-..                   ...+.+.|..+|+++..   +
T Consensus        26 ~~~~~~~~G~~ly~~~Ca~CHG~~g~G--~~gP~L~~~~~-------------------~~~~~~~l~~~I~~G~~---~   81 (112)
T d1nira1          26 MSESEFNEAKQIYFQRCAGCHGVLRKG--ATGKPLTPDIT-------------------QQRGQQYLEALITYGTP---L   81 (112)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHTTTTCC--SSSSCCSHHHH-------------------HHHCHHHHHHHHHHCCS---S
T ss_pred             CCHHHHHHHHHHHHHHcccccccCccc--ccchhhhhhhh-------------------hhhhhhhhhhhhhhccc---c
Confidence            344557899999999999999997643  45788753100                   00156789999988753   3


Q ss_pred             CCCCCC--CCCCHHHHHHHHHHHHhhc
Q 033769           87 TKMVFP--GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        87 ~~m~~~--~~l~~~ei~~l~ayl~sl~  111 (112)
                      .|++|.  ..|||+||++|++||++++
T Consensus        82 ~MP~~~~~~~Lsd~ei~~l~~Yv~~~~  108 (112)
T d1nira1          82 GMPNWGSSGELSKEQITLMAKYIQHTP  108 (112)
T ss_dssp             SCCCSTTTTSSCHHHHHHHHHHTTSCC
T ss_pred             cCCCccccCCCCHHHHHHHHHHHHHCC
Confidence            455675  3589999999999999875

>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.73  E-value=1.1e-18  Score=103.16  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=56.1

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||..+|+.||+.++.+ ....|.|..+..                     .+.+.+..++.++.... ..|+
T Consensus        18 ~~~~~G~~ly~~~Ca~CHg~~g~g-~~~~p~l~~~~~---------------------~~~~~~~~~i~~g~~~~-~~Mp   74 (104)
T d1kv9a1          18 EQVQAGKQLYGQFCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKP-LGMP   74 (104)
T ss_dssp             HHHHHHHHHHHHHTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGG-GTCC
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCC-CCCCCccccccc---------------------cchHHHHHHHHhhhccc-ccCC
Confidence            345899999999999999987644 345666654211                     13455667776654321 2345


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|.+.||++||++|++||++++
T Consensus        75 ~~~~~Lsd~ei~~v~aYi~s~~   96 (104)
T d1kv9a1          75 SFDDSLKPEEVEQIKLYVMSRE   96 (104)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhC
Confidence            7888899999999999999875

>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.1e-17  Score=104.51  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCC
Q 033769            8 PPGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGT   87 (112)
Q Consensus         8 ~~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   87 (112)
                      ..+.+++|++||+.+|+.||+.++.|  ..+|.|.+....         +..       ..+...+...|.++..   +.
T Consensus        42 d~~~v~~G~~lf~~~Ca~CHG~~g~G--~~~P~l~~~~~~---------~~~-------~~~~~~i~~~i~~G~~---~~  100 (147)
T d2gc4d1          42 DPEILPEAEELYAGMCSGCHGHYAEG--KIGPGLNDAYWT---------YPG-------NETDVGLFSTLYGGAT---GQ  100 (147)
T ss_dssp             CTTTHHHHHHHHHHHTHHHHCTTSSC--SSSCCCSSSCCS---------SGG-------GGSHHHHHHHHHHCCS---TT
T ss_pred             CHHHHHHHHHHHHHhcccccCcCCCC--CCcccCCCchhh---------hhh-------hhHHHHHHHHHHhhcc---cc
Confidence            44568999999999999999987644  457887742111         110       1145567788877653   46


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           88 KMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        88 ~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ||+|.+.++++||++|++||+++.
T Consensus       101 Mp~~~~~Ls~~ei~~lvaYi~sl~  124 (147)
T d2gc4d1         101 MGPMWGSLTLDEMLRTMAWVRHLY  124 (147)
T ss_dssp             CCCCTTTSCHHHHHHHHHHHHHTC
T ss_pred             ccccccCCCHHHHHHHHHHHHHhC
Confidence            888888889999999999999875

>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Desulfovibrio vulgaris, different strains [TaxId: 881]

Probab=99.72  E-value=8.3e-19  Score=98.82  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhCcccccccCCCC-CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC-C
Q 033769           13 KAGEKIFKTKCAQCHTVVKGAG-HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM-V   90 (112)
Q Consensus        13 ~~G~~lf~~~C~~CH~~~~~~~-~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m-~   90 (112)
                      ++|++||+ +|++||+.+|.+. ...+|.|.+.....                    ....+..+....+...++.+| +
T Consensus         1 A~G~~ly~-~Ca~CHG~~G~g~~~~~~p~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~Mp~   59 (79)
T d1c53a_           1 ADGAALYK-SCVGCHGADGSKQAMGVGHAVKGQKADE--------------------LFKKLKGYADGSYGGEKKAVMTN   59 (79)
T ss_pred             CCcHHHHH-HHHHhCCCcccccccccCccccccchHH--------------------HHHHHHHHHHHHHhccchhccHH
Confidence            36999996 6999999986442 23456666432111                    122344443333333345566 5


Q ss_pred             CCCCCCHHHHHHHHHHHHhh
Q 033769           91 FPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~sl  110 (112)
                      |...|||+||++|++||++|
T Consensus        60 ~~~~Lsd~ei~~l~aYi~sL   79 (79)
T d1c53a_          60 LVKRYSDEEMKAMADYMSKL   79 (79)
T ss_pred             HHhcCCHHHHHHHHHHHHhC
Confidence            88889999999999999987

>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=4.4e-18  Score=103.98  Aligned_cols=78  Identities=18%  Similarity=0.258  Sum_probs=56.9

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      ++..+|++||.++|+.||+.++.|  ..||.|...+.                   ..+..+.|..+|+++.   ++.|+
T Consensus        44 ~~~~~G~~ly~~~Ca~CHg~~g~G--~~gp~l~~~~~-------------------~~~~~~~l~~~I~~G~---~~~MP   99 (127)
T d1qksa1          44 AQYNEANKIYFERCAGCHGVLRKG--ATGKALTPDLT-------------------RDLGFDYLQSFITYAS---PAGMP   99 (127)
T ss_dssp             HHHHHHHHHHHHHTHHHHCTTSSC--SSSCCCCHHHH-------------------HHHCHHHHHHHHTTCC---CCCCT
T ss_pred             HHHHHHHHHHHHHhHHhcCCcCCC--CcCCCccchhh-------------------hccCHHHHHHHHHhcc---cccCc
Confidence            345789999999999999987643  46787752110                   0125678999998874   23455


Q ss_pred             CCC--CCCCHHHHHHHHHHHHhhc
Q 033769           90 VFP--GLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~--~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|.  +.||++||++|++||+++.
T Consensus       100 ~fg~~~~Lsd~ei~~l~~Yi~~~~  123 (127)
T d1qksa1         100 NWGTSGELSAEQVDLMANYLLLDP  123 (127)
T ss_dssp             TTSCCCCCCHHHHHHHHHHHHSCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHhCC
Confidence            686  4589999999999998764

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

Probab=99.70  E-value=3.8e-18  Score=98.05  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=54.3

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||+.+|+.||+.++.+... .+.+.....+.              ........+.+...++++.    +.|+
T Consensus         2 adl~~G~~ly~~~Ca~CHg~~g~g~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~g~----~~Mp   62 (89)
T d1ctja_           2 ADLALGKAVFDGNCAACHAGGGNNVIP-DHTLQKAAIEQ--------------FLDGGFNIEAIVYQIENGK----GAMP   62 (89)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSSST-TSCSSHHHHHH--------------HSTTCSSHHHHHHHHHHCB----TTBC
T ss_pred             ccHHHHHHHHHHhchhccccccCcccc-CCCCCccchhh--------------hhcccccHHHHHHHHhcCc----CCCC
Confidence            678999999999999999987644211 11111110000              0000114567777777775    2355


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|.+.||++||++|++||+++.
T Consensus        63 ~~~~~Lsd~ei~~v~~Yi~~~~   84 (89)
T d1ctja_          63 AWDGRLDEDEIAGVAAYVYDQA   84 (89)
T ss_dssp             CCBTTBCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHc
Confidence            7888899999999999999874

>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Red alga (Porphyra yezoensis) [TaxId: 2788]

Probab=99.70  E-value=4.7e-18  Score=96.87  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++.+|++||+.+|+.||+.++.+. ..+|.+....               ....+ ..+.+.+...++++.    +.|+
T Consensus         1 Adi~~G~~ly~~~Ca~CHg~~g~g~-~~~~~~~~~~---------------~~~~~-~~~~~~~~~~~~~g~----~~Mp   59 (85)
T d1gdva_           1 ADLDNGEKVFSANCAACHAGGNNAI-MPDKTLKKDV---------------LEANS-MNTIDAITYQVQNGK----NAMP   59 (85)
T ss_dssp             CHHHHHHHHHHHHTHHHHGGGCCSS-STTSCCCHHH---------------HHHTT-CCSHHHHHHHHHHCB----TTBC
T ss_pred             CCHHHHHHHHHHHChHhhhcccCCC-CCCCCCchhh---------------hhccc-ccCHHHHHHHHhcCC----CCCC
Confidence            3678999999999999999875332 1112221100               00000 114567777777765    2455


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...|||+||++|++||++++
T Consensus        60 ~~~~~Lsd~ei~~v~~Yi~~~a   81 (85)
T d1gdva_          60 AFGGRLVDEDIEDAANYVLSQS   81 (85)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHH
Confidence            7888899999999999998864

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.68  E-value=4.5e-19  Score=101.01  Aligned_cols=80  Identities=14%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++.+|++||.++|++||+.++.+....+|.....  ..          ...     .-..+.+...+.++..    .|+
T Consensus         2 g~~~~G~~ly~~~Ca~CHg~~g~G~~~~~~~~~~~--~~----------~~~-----~~~~~~~~~~~~~~~~----~MP   60 (83)
T d1cc5a_           2 GGARSGDDVVAKYCNACHGTGLLNAPKVGDSAAWK--TR----------ADA-----KGGLDGLLAQSLSGLN----AMP   60 (83)
T ss_dssp             CCSSCSHHHHHHTTHHHHTTTTTTCCCTTCHHHHH--HH----------HHH-----HTSSTTTHHHHHHCBT----TBC
T ss_pred             CCcchHHHHHHHHHHHHhcCCCCCCCCCCChhhcc--cc----------ccc-----ccCHHHHHHHhhhccc----ccc
Confidence            56788999999999999998765533333321110  00          000     0011223344444332    343


Q ss_pred             CC--CCCCCHHHHHHHHHHHHhh
Q 033769           90 VF--PGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        90 ~~--~~~l~~~ei~~l~ayl~sl  110 (112)
                      +|  ...|||+||++|++||++|
T Consensus        61 ~~g~~~~Lsd~ei~~vv~Yi~~L   83 (83)
T d1cc5a_          61 PKGTCADCSDDELKAAIGKMSGL   83 (83)
T ss_dssp             SSSSCSSCCHHHHHHHHHHHHCC
T ss_pred             cccccCCCCHHHHHHHHHHHhhC
Confidence            44  3568999999999999986

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.68  E-value=1.7e-17  Score=95.49  Aligned_cols=83  Identities=13%  Similarity=0.180  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +++++|++||+.+|+.||+.++.+. ..+|.+.......              ..........+...++++..    .|+
T Consensus         1 Adi~~G~~ly~~~Ca~CHg~~g~g~-~~~~~~~~~~~~~--------------~~~~~~~~~~i~~~i~~g~~----~mp   61 (90)
T d1cyja_           1 ADLALGAQVFNGNCAACHMGGRNSV-MPEKTLDKAALEQ--------------YLDGGFKVESIIYQVENGKG----AMP   61 (90)
T ss_dssp             CCHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSHHHHHH--------------HSTTCSSHHHHHHHHHHCBT----TBC
T ss_pred             CcHHHHHHHHHHHCHHhhccccccc-CCCCCCCcchhhh--------------hhccCCcHHHHHHHHHcCcC----CCC
Confidence            4789999999999999999775432 2223322110000              00001145667777777642    344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...|||+||++|++||+++.
T Consensus        62 ~~~~~Lsd~ei~~v~aYi~~~a   83 (90)
T d1cyja_          62 AWADRLSEEEIQAVAEYVFKQA   83 (90)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHc
Confidence            7888899999999999998764

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

Probab=99.68  E-value=1.1e-17  Score=95.68  Aligned_cols=84  Identities=19%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCC
Q 033769           11 NPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMV   90 (112)
Q Consensus        11 ~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~   90 (112)
                      |+++|++||+.+|+.||+.++.+. ..+|.+........            ...........+...++++.    +.|++
T Consensus         1 Di~~G~~ly~~~Ca~CHg~~g~g~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~g~----~~Mp~   63 (88)
T d1f1fa_           1 DVAAGASVFSANCAACHMGGRNVI-VANKTLSKSDLAKY------------LKGFDDDAVAAVAYQVTNGK----NAMPG   63 (88)
T ss_dssp             CHHHHHHHHHHHTHHHHGGGCCSS-STTCCSSHHHHHHH------------STTTTTCHHHHHHHHHHHCB----TTBCC
T ss_pred             ChHHHHHHHHHHHHHhhcCcccCC-ccCCCCCccchhhh------------ccccccchHHHHHHHHhcCc----CCCCc
Confidence            578999999999999999875432 22333332100000            00000113445666666654    34557


Q ss_pred             CCCCCCHHHHHHHHHHHHhhc
Q 033769           91 FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        91 ~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      |...||++||++|++||++++
T Consensus        64 ~~~~Lsd~ei~~v~aYi~~~a   84 (88)
T d1f1fa_          64 FNGRLSPLQIEDVAAYVVDQA   84 (88)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHH
Confidence            888899999999999999875

>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=2.9e-18  Score=105.12  Aligned_cols=82  Identities=21%  Similarity=0.140  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-------CC
Q 033769           13 KAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-------IP   85 (112)
Q Consensus        13 ~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~   85 (112)
                      ++|++||+ +|++||+.+|.|....+|.|.+......               ....+.+.+...+.++...       ..
T Consensus         2 A~G~~lY~-~Ca~CHG~~G~G~~~~~p~l~~~~~~~~---------------~~~~~~~~~~~~i~~g~~~~~~~~g~~~   65 (131)
T d1c52a_           2 ADGAKIYA-QCAGCHQQNGQGIPGAFPPLAGHVAEIL---------------AKEGGREYLILVLLYGLQGQIEVKGMKY   65 (131)
T ss_dssp             CCHHHHTH-HHHHHHCTTSCCBTTTBCCCTTHHHHHH---------------TSTTHHHHHHHHHHHCEEEEEEETTEEE
T ss_pred             CchHHHHH-HHHHHcCCCCCCCCCCCCccCCCccccc---------------cccCCHHHHHHHHHcccccccccCCccc
Confidence            47999996 7999999998776667788765311000               0011455677777655321       11


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhh
Q 033769           86 GTKMVFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        86 ~~~m~~~~~l~~~ei~~l~ayl~sl  110 (112)
                      ..||++.+.|||+||++|++||++.
T Consensus        66 ~~m~~~~~~LsD~eI~av~~YIr~~   90 (131)
T d1c52a_          66 NGVMSSFAQLKDEEIAAVLNHIATA   90 (131)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHT
T ss_pred             ccccccccCCCHHHHHHHHHHHHHH
Confidence            2467777788999999999999864

>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.66  E-value=3.6e-17  Score=94.90  Aligned_cols=82  Identities=12%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCC--CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC--
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGH--KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP--   85 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~--~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--   85 (112)
                      +.+++|++||..+|+.||+.+|.+..  ...|.+.+....                    +....|..|....+....  
T Consensus         8 a~a~~G~~ly~~~Ca~CHg~~G~g~~~~~~~p~l~g~~~~--------------------yl~~~l~~~~~g~r~~~~~~   67 (94)
T d1fcdc2           8 ALADTGAKLHDKYCEKCHVEGGKPLADEEDYHILAGQWTP--------------------YLQYAMSDFREERRPMEKKM   67 (94)
T ss_dssp             HHHHHHHHHHHHHTTTTSHHHHCCCCSSSCCCCCTTCCHH--------------------HHHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHhHHHHHHHhHHhcCcCCCCCCccccccccccCChH--------------------HHHHHHHHHHhCCCcCcchh
Confidence            34789999999999999998875422  234545432110                    012334444322222111  


Q ss_pred             C-CCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           86 G-TKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        86 ~-~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      + .|+++...|||+||++|++||.+++
T Consensus        68 ~~~M~~~~~~LSd~di~alaaY~~Sqk   94 (94)
T d1fcdc2          68 ASKLRELLKAEGDAGLDALFAFYASQQ   94 (94)
T ss_dssp             HHHHHTTGGGSTHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence            1 2447878889999999999999874

>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c-L (MoxG)
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.65  E-value=3.2e-16  Score=97.96  Aligned_cols=79  Identities=22%  Similarity=0.438  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCCCC
Q 033769           12 PKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKMVF   91 (112)
Q Consensus        12 ~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m~~   91 (112)
                      +++|++||..+|+.||+.++.|.  .++.+....         +.+..       ..+...+...+.++..   +.|++|
T Consensus        31 v~~G~~ly~~~Ca~CHg~~g~G~--~~~~~~~~~---------~~~~~-------~~~~~~~~~~i~~G~~---~~MP~~   89 (149)
T d2c8sa1          31 LRNGESLFATSCSGCHGHLAEGK--LGPGLNDNY---------WTYPS-------NTTDVGLFATIFGGAN---GMMGPH   89 (149)
T ss_dssp             HHHHHHHHHHHTHHHHCTTSSCS--SSCCSSSSC---------CSSGG-------GGSHHHHHHHHHTCTT---SSSCSC
T ss_pred             HHHHHHHHHHhCccccCCCCCCC--cccCCCCcc---------ccccc-------chhhhHHHHHHhcccc---cccccc
Confidence            57899999999999999876442  233332211         00000       1145567778877642   345578


Q ss_pred             CCCCCHHHHHHHHHHHHhhc
Q 033769           92 PGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        92 ~~~l~~~ei~~l~ayl~sl~  111 (112)
                      ...||++||++|++||++|.
T Consensus        90 ~~~Lsdeei~~ivaYvr~l~  109 (149)
T d2c8sa1          90 NENLTPDEMLQTIAWIRHLY  109 (149)
T ss_dssp             CCCSCHHHHHHHHHHHHHTC
T ss_pred             ccCCCHHHHHHHHHHHHHhc
Confidence            88889999999999999875

>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.65  E-value=1.6e-17  Score=94.07  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             HHH-hhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCC-CCCC-CCCCC
Q 033769           18 IFK-TKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIP-GTKM-VFPGL   94 (112)
Q Consensus        18 lf~-~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~m-~~~~~   94 (112)
                      ||. .+|++||+.++   ..++|.+..+..+.....               ...++|..+|++|....+ ...| +|.. 
T Consensus         4 L~~~~~C~~CH~~~~---~g~gP~~~~i~~~~~~~~---------------~~~~~l~~~i~~~~~~~~~~~~Mp~~~~-   64 (81)
T d1a56a_           4 LAKKNNCIACHQVET---KVVGPALKDIAAKYADKD---------------DAATYLAGKIKGGSSGVWGQIPMPPNVN-   64 (81)
T ss_dssp             HHHHHSHHHHBCSSC---BSSSCCHHHHHHHHTTSS---------------SHHHHHHHHHHHCBSSSSSSCCBCSCCS-
T ss_pred             HHHcCCcHhhCCCcC---cCccccccchhhhccccc---------------cchhHHHHHHhcccccccCCcccccccC-
Confidence            554 46999999975   346888877654432211               146789999998876543 3445 5655 


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 033769           95 KKPQDRADLIAYLKEST  111 (112)
Q Consensus        95 l~~~ei~~l~ayl~sl~  111 (112)
                      |||+||++|++||+||+
T Consensus        65 Lsd~ei~~l~~Yl~slk   81 (81)
T d1a56a_          65 VSDADAKALADWILTLK   81 (81)
T ss_dssp             SSSHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            78999999999999985

>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Green alga (Cladophora glomerata) [TaxId: 162068]

Probab=99.65  E-value=2e-17  Score=95.24  Aligned_cols=83  Identities=17%  Similarity=0.149  Sum_probs=52.4

Q ss_pred             CCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           10 GNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        10 ~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +.+++|++||.++|++||+.++.+. ..+|.+......              ...........+...++++.    +.|+
T Consensus         4 ~~~~~G~~ly~~~Ca~CHg~~g~g~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~----~~MP   64 (91)
T d1ls9a_           4 ELLADGKKVFAGNCAACHLGGNNSV-LADKTLKKDAIE--------------KYLEGGLTLEAIKYQVNNGK----GAMP   64 (91)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSS-STTSCSSHHHHH--------------HHSTTCSCHHHHHHHHHHCB----TTBC
T ss_pred             HHHHHHHHHHHHhChHhhccccccc-cCCCCCChhhhh--------------ccccccchHHHHHHHhhcCc----CCCc
Confidence            4568999999999999999875432 122322211000              00000113556667776654    2344


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhc
Q 033769           90 VFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      +|...|||+||++|++||+++.
T Consensus        65 ~~~~~Lsdeei~~l~aYi~~~a   86 (91)
T d1ls9a_          65 AWADRLDEDDIEAVSNYVYDQA   86 (91)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHc
Confidence            7888899999999999998764

>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.64  E-value=4.3e-17  Score=91.99  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             HHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC-CCCC
Q 033769           15 GEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM-VFPG   93 (112)
Q Consensus        15 G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m-~~~~   93 (112)
                      |.++|..+|+.||+.+|.+.....|.|.+.....                    ..+.|..|.....   .+..| +|..
T Consensus         3 ~~~l~~~~Ca~CHG~~G~g~~~~~p~l~~~~~~~--------------------~~~~l~~~~~g~~---~~~~M~~~~~   59 (80)
T d1fcdc1           3 TAEMLTNNCAGCHGTHGNSVGPASPSIAQMDPMV--------------------FVEVMEGFKSGEI---ASTIMGRIAK   59 (80)
T ss_dssp             CHHHHHHTTTTTSCGGGCCCSSSSCCCSSCCHHH--------------------HHHHHHHHHHTCS---CCSSHHHHHT
T ss_pred             hHHHHHHHHHHhCcCcccCcccccchhhhhhHHH--------------------HHHHHHHHHHhhh---hhhhHHHHHc
Confidence            5678888999999999876666678877542110                    1233444433222   23456 5777


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 033769           94 LKKPQDRADLIAYLKEST  111 (112)
Q Consensus        94 ~l~~~ei~~l~ayl~sl~  111 (112)
                      .|||+||++|++||.+++
T Consensus        60 ~Lsd~ei~~la~Y~~sq~   77 (80)
T d1fcdc1          60 GYSTADFEKMAGYFKQQT   77 (80)
T ss_dssp             TSCHHHHHHHHHHHHTSC
T ss_pred             cCCHHHHHHHHHHHHhCC
Confidence            789999999999998875

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

Probab=99.64  E-value=5.4e-17  Score=98.80  Aligned_cols=88  Identities=22%  Similarity=0.262  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-----
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-----   83 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----   83 (112)
                      .+++++|++||..+|+.||+.++.+. ..++.+.........  +            ..+....+..++.++...     
T Consensus        21 ~~~~~~G~~lf~~~Ca~CH~~~g~g~-~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T d1f1ca_          21 LKEIKKGQQVFNAACAQCHALGVTRT-NPDVNLSPEALALAT--P------------PRDNIAALVDYIKNPTTYDGFVE   85 (129)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCTT-CSSSCSSHHHHHTSS--S------------CCCSHHHHHHHHHSCBCTTSCSB
T ss_pred             HHHHHHHHHHHHHhhHHHcCCCCCCC-CCccccccccccccC--C------------CccccchhhhhhcCccccccccc
Confidence            35579999999999999999765332 122222211100000  0            012456677777665432     


Q ss_pred             --------CCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           84 --------IPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        84 --------~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                              .+..+|+....|||+||++|++||+++.
T Consensus        86 ~~~~~~~~~~~~~mp~~~~Lsdedi~ai~aYi~~~p  121 (129)
T d1f1ca_          86 ISELHPSLKSSDIFPKMRNISEDDLYNVAGYILLQP  121 (129)
T ss_dssp             CTTTSCSTTCTTTCGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             ceeecccccCCCCCCccccCCHHHHHHHHHHHHHcc
Confidence                    1234565335578999999999999874

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=99.63  E-value=5.8e-17  Score=99.51  Aligned_cols=88  Identities=25%  Similarity=0.285  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-----
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-----   83 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----   83 (112)
                      .+++++|++||..+|+.||+.++.   ..+|.............+.            ..+...+..+++++...     
T Consensus        23 ~~~~~~Gk~lf~~~Ca~CH~~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~~   87 (135)
T d1e29a_          23 ARQFTNGQKIFVDTCTQCHLQGKT---KTNNNVSLGLADLAGAEPR------------RDNVLALVEFLKNPKSYDGEDD   87 (135)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCB---SSSSSCSSSHHHHHTSSSC------------CSSHHHHHHHHHSCBCTTSCSB
T ss_pred             HHHHHHHHHHHHHhhHHhcCCCCC---CCCCccccccccccccCCc------------chhhhHHHhhhcccchhhhhhh
Confidence            356899999999999999986542   2233322111000000000            01567788888776432     


Q ss_pred             --------CCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           84 --------IPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        84 --------~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                              .+..+|+....|||+||++|++||+++.
T Consensus        88 ~~~~~~~~~~~~~mp~~~~Lsdedi~~vaaYi~~qp  123 (135)
T d1e29a_          88 YSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIAP  123 (135)
T ss_dssp             CTTTSCCTTCTTTCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHhhccccCCCCCCccCCCCHHHHHHHHHHHHhcc
Confidence                    1234565445688999999999998763

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=99.63  E-value=5.5e-17  Score=99.07  Aligned_cols=87  Identities=20%  Similarity=0.258  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHHhhCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCC----
Q 033769            9 PGNPKAGEKIFKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYI----   84 (112)
Q Consensus         9 ~~~~~~G~~lf~~~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----   84 (112)
                      .+++++|++||+.+|+.||+.++.+   .+|.+...........+            ...+.+.+..+++++....    
T Consensus        23 ~~~~~~Gk~lf~~~Ca~CH~~~g~g---~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~~   87 (131)
T d1mz4a_          23 EKQYLEGKRLFQYACASCHVGGITK---TNPSLDLRTETLALATP------------PRDNIEGLVDYMKNPTTYDGEQE   87 (131)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGCCT---TCGGGCCCHHHHHTSSS------------CCSSHHHHHHHHHSCBCTTSSSB
T ss_pred             HHHHHHHHHHHHHHhHHHcCCCCCC---CCCcccccccccccccC------------cccccccccccccCcccccccch
Confidence            3457999999999999999876533   23322211100000000            0125778899998764321    


Q ss_pred             ---------CCCCCC-CCCCCCHHHHHHHHHHHHhhc
Q 033769           85 ---------PGTKMV-FPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        85 ---------~~~~m~-~~~~l~~~ei~~l~ayl~sl~  111 (112)
                               +...|| |.. |||+||++|++||+++.
T Consensus        88 ~~~~~~~~~~~~~MP~f~~-Lsdeei~av~aYi~~~p  123 (131)
T d1mz4a_          88 IAEVHPSLRSADIFPKMRN-LTEKDLVAIAGHILVEP  123 (131)
T ss_dssp             CTTTSCCGGGTTTSGGGTT-CCHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccCCCCCCcccC-CCHHHHHHHHHHHHhcC
Confidence                     234464 644 78999999999998764

>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Ectothiorhodospira halophila [TaxId: 1053]

Probab=99.59  E-value=2.1e-16  Score=88.85  Aligned_cols=72  Identities=19%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             HHHHHHHh----hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCCCCCCCC
Q 033769           14 AGEKIFKT----KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKYIPGTKM   89 (112)
Q Consensus        14 ~G~~lf~~----~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~m   89 (112)
                      +|++||.+    +|++||+.++.+....+|.....  ..                 . ...+.+...+.++.    +.|+
T Consensus         1 dG~~iy~~~~~~~CasCHg~~g~G~~~~~~~~~~~--~~-----------------~-~~~~~~~~~~~~g~----~~MP   56 (78)
T d1gksa_           1 DGESIYINGTAPTCSSCHDRGVAGAPELNAPEDWA--DR-----------------P-SSVDELVESTLAGK----GAMP   56 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTTGGGCCCTTCHHHHH--TS-----------------C-CCHHHHHHHHHHCB----TTBC
T ss_pred             CHHHHHhhccchhhHHHhccCCCCCCCCCChhHcc--cc-----------------c-hhHHHHHHHhhhcc----cccC
Confidence            48999986    59999998764433333322210  00                 0 03455666666654    3456


Q ss_pred             CCCCCCCHHHHHHHHHHHHh
Q 033769           90 VFPGLKKPQDRADLIAYLKE  109 (112)
Q Consensus        90 ~~~~~l~~~ei~~l~ayl~s  109 (112)
                      +|.+.|||+||++|++||++
T Consensus        57 a~g~~LsdeeI~~v~~Yi~~   76 (78)
T d1gksa_          57 AYDGRADREDLVKAIEYMLS   76 (78)
T ss_dssp             CCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHH
Confidence            89889999999999999975

>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.56  E-value=6.5e-16  Score=88.93  Aligned_cols=77  Identities=23%  Similarity=0.284  Sum_probs=53.4

Q ss_pred             CCCCCHHHHHHHHHh--------hCcccccccCCCCCCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHh
Q 033769            7 APPGNPKAGEKIFKT--------KCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLL   78 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~--------~C~~CH~~~~~~~~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   78 (112)
                      ...+++++|+.||+.        .|+.||+.+|.+. ...|.|.++                        +.++|...|+
T Consensus         2 ~~~a~~~~G~~iy~~G~~~~~~~~C~~CHG~~G~g~-~~~P~LaGq------------------------~~~Yl~~qL~   56 (90)
T d1h1oa2           2 IKHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQGA-GPFPRLAGQ------------------------RYGYIIQQLT   56 (90)
T ss_dssp             CCCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCCB-TTBCCCTTC------------------------CHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCCcccCCchhhhcCCCccCCC-CCCCccCCC------------------------CHHHHHHHHH
Confidence            356788999999985        3999999987543 335888764                        2334444332


Q ss_pred             ---CCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhh
Q 033769           79 ---NPKKYIPGTKM-VFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        79 ---~~~~~~~~~~m-~~~~~l~~~ei~~l~ayl~sl  110 (112)
                         ++.  ..+.+| ++...+||+||++|++||.+|
T Consensus        57 ~f~~g~--R~~~~M~~~a~~lsd~ei~~la~Y~asL   90 (90)
T d1h1oa2          57 YFHNGT--RVNTLMNQIAKNITVAQMKDVAAYLSSL   90 (90)
T ss_dssp             HHHHTS--SCCHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred             HHHcCC--cCchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence               222  224456 565667899999999999986

>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.51  E-value=9.7e-15  Score=85.19  Aligned_cols=77  Identities=21%  Similarity=0.252  Sum_probs=52.0

Q ss_pred             CCHHHHHHHHHh--------hCcccccccCCCCC-CCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHH---
Q 033769           10 GNPKAGEKIFKT--------KCAQCHTVVKGAGH-KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYL---   77 (112)
Q Consensus        10 ~~~~~G~~lf~~--------~C~~CH~~~~~~~~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---   77 (112)
                      +.+++|++||+.        .|+.||+.+|.+.. ...|.|.++                        +.++|...|   
T Consensus         6 a~~~~G~~l~~~G~~~~~i~~C~~CHg~~G~g~~~~~~P~L~G~------------------------~~~Yl~~qL~~~   61 (98)
T d1m70a2           6 ALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQ------------------------HAAYTAKQLTDF   61 (98)
T ss_dssp             HHHHHHHHHHHHCBGGGTBCCSHHHHCTTSCCBGGGTBCCCTTC------------------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccCCchhhhcCCCccccCcCCCCCccccc------------------------hHHHHHHHHHHH
Confidence            457899999976        49999999875532 346787764                        233444433   


Q ss_pred             -hCCCCC-CCCCCC-CCCCCCCHHHHHHHHHHHHhh
Q 033769           78 -LNPKKY-IPGTKM-VFPGLKKPQDRADLIAYLKES  110 (112)
Q Consensus        78 -~~~~~~-~~~~~m-~~~~~l~~~ei~~l~ayl~sl  110 (112)
                       ...+.. .+..+| ++...+||+||++|++||.+|
T Consensus        62 ~~g~r~~~~~~~~M~~~~~~lsd~di~~la~YiasL   97 (98)
T d1m70a2          62 REGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGL   97 (98)
T ss_dssp             HHTSCCTTTTTCHHHHHHTTCCHHHHHHHHHHHHTC
T ss_pred             HhccccCCchhhhHHHHHHhCCHHHHHHHHHHHHHc
Confidence             222221 123456 566678899999999999987

>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=99.39  E-value=4.4e-14  Score=79.58  Aligned_cols=71  Identities=17%  Similarity=0.219  Sum_probs=43.2

Q ss_pred             hhCcccccccCCCC-CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHHHHHhCCCCC-CCCCCC-CCCCCCCH
Q 033769           21 TKCAQCHTVVKGAG-HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLYDYLLNPKKY-IPGTKM-VFPGLKKP   97 (112)
Q Consensus        21 ~~C~~CH~~~~~~~-~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~m-~~~~~l~~   97 (112)
                      .+|+.||+.+|.+. ....|.|.+....                    +....+..+....+.. .++..| +|...|||
T Consensus         3 ~~Ca~CHG~~G~G~~~~~~P~l~g~~~~--------------------~~~~~~~~~~~g~r~~~~~~~~M~~~~~~LSd   62 (82)
T d1h1oa1           3 SDCMVCHGMTGRDTLYPIVPRLAGQHKS--------------------YMEAQLKAYKDHSRADQNGEIYMWPVAQALDS   62 (82)
T ss_dssp             GGTHHHHCBTTBCCSSTTSCCCTTCCHH--------------------HHHHHHHHHHTTCCCCHHHHHHTHHHHHTCCH
T ss_pred             chhHHhCCCcCCCCcccccccccCCcHH--------------------HHHHHHHHhhhhhhhcccccccchHHHhhCCH
Confidence            47999999987553 2345777653110                    0122344443322221 122345 57777899


Q ss_pred             HHHHHHHHHHHhhc
Q 033769           98 QDRADLIAYLKEST  111 (112)
Q Consensus        98 ~ei~~l~ayl~sl~  111 (112)
                      +||++|++||++|+
T Consensus        63 ~eI~~la~Yi~sl~   76 (82)
T d1h1oa1          63 AKITALADYFNAQK   76 (82)
T ss_dssp             HHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999985

>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.97  E-value=1.2e-09  Score=68.31  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=18.0

Q ss_pred             CCCCHHHHHHHHHh-hCcccccc
Q 033769            8 PPGNPKAGEKIFKT-KCAQCHTV   29 (112)
Q Consensus         8 ~~~~~~~G~~lf~~-~C~~CH~~   29 (112)
                      ....+.+|++||.. .|+.||..
T Consensus        15 lt~~e~rG~~LF~~~gC~~CH~~   37 (160)
T d1nmla2          15 LNESEKEGLALFMDRGCTACHSG   37 (160)
T ss_dssp             SCHHHHHHHHHHHHTTGGGTSCB
T ss_pred             CCHHHHHHHHHHhccCCCccccc
Confidence            45667899999976 69999964

>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.91  E-value=3.8e-09  Score=65.93  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=18.2

Q ss_pred             CCCCCHHHHHHHHHh-hCccccc
Q 033769            7 APPGNPKAGEKIFKT-KCAQCHT   28 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~-~C~~CH~   28 (112)
                      +...++.+|++||.+ .|+.||.
T Consensus        16 alt~~e~rG~~lF~~~gCa~CH~   38 (159)
T d1eb7a2          16 ALDAQQKKGLKAFMDSGCSACHN   38 (159)
T ss_dssp             SSCHHHHHHHHHHHHTTGGGTSC
T ss_pred             CCCHHHHHHHHHHHhcCCccccc
Confidence            345678999999976 6999996

>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.86  E-value=1.5e-09  Score=67.72  Aligned_cols=22  Identities=36%  Similarity=0.691  Sum_probs=18.1

Q ss_pred             CCCCCHHHHHHHHHh-hCccccc
Q 033769            7 APPGNPKAGEKIFKT-KCAQCHT   28 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~-~C~~CH~   28 (112)
                      +...++.+|++||.. .|+.||.
T Consensus        16 als~~~~rG~~lF~~~gC~~CH~   38 (158)
T d1iqca2          16 ALNQDELEGYNLFKGSGCVQCHN   38 (158)
T ss_dssp             SSCHHHHHHHHHHHHHTGGGTSC
T ss_pred             cCCHHHHHHHHHHccCCCccccc
Confidence            345678899999986 5999996

>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=1.5e-07  Score=52.65  Aligned_cols=17  Identities=35%  Similarity=0.909  Sum_probs=15.3

Q ss_pred             HHHHHHHhhCccccccc
Q 033769           14 AGEKIFKTKCAQCHTVV   30 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~   30 (112)
                      .|++|+..+|..||+.+
T Consensus         2 tG~~lv~~~C~~CHs~~   18 (85)
T d1pbya1           2 TGEEVLQNACAACHVQH   18 (85)
T ss_dssp             CHHHHHHHTGGGTSCBC
T ss_pred             CHHHHHHHHHHHhCCcc
Confidence            48999999999999975

>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Pseudomonas putida [TaxId: 303]

Probab=98.16  E-value=1.5e-07  Score=52.51  Aligned_cols=18  Identities=28%  Similarity=0.702  Sum_probs=15.9

Q ss_pred             HHHHHHHhhCcccccccC
Q 033769           14 AGEKIFKTKCAQCHTVVK   31 (112)
Q Consensus        14 ~G~~lf~~~C~~CH~~~~   31 (112)
                      .|++|+..+|..||+.+.
T Consensus         2 ~G~~lv~~~C~~CHs~~~   19 (84)
T d1jmxa1           2 QGPSLLQNKCMGCHIPEG   19 (84)
T ss_dssp             CHHHHHHHHHBTTBCEEE
T ss_pred             cHHHHHHHHHHHhcCchh
Confidence            699999999999998753

>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c''
species: Methylophilus methylotrophus, strain w3a1 [TaxId: 17]

Probab=98.11  E-value=1.1e-06  Score=51.26  Aligned_cols=87  Identities=20%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             CCCCCCCHHHHHHHHHh----------hCcccccccCCCC--C-CCCCCCCCccCCCCCCCCCCccchhccccceeeCHH
Q 033769            5 EEAPPGNPKAGEKIFKT----------KCAQCHTVVKGAG--H-KQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEK   71 (112)
Q Consensus         5 ~~~~~~~~~~G~~lf~~----------~C~~CH~~~~~~~--~-~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (112)
                      |.....++++|+++|.+          .|++||+.+....  . ..|..+.-+..    ....-.|+          +.+
T Consensus        21 P~f~~~sa~rGe~lf~~k~~~~~g~~~sCasCH~~~p~~~G~h~~TgK~I~PlAp----s~np~Rft----------D~a   86 (124)
T d1gu2a_          21 PMYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNPANVGKNIVTGKEIPPLAP----RVNTKRFT----------DID   86 (124)
T ss_dssp             TTCCSCCHHHHHHHHHCCEECTTSCEECHHHHHCSCTTSCEECTTTCCEECCSCT----TTSTTTTT----------CHH
T ss_pred             ccccccCHHHHHHHHhccccCCCCCcCccccccCCCcccCCccccCCCcccccCC----ccChhhhc----------CHH
Confidence            44556889999999964          3999999764211  1 11222221111    01111122          456


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 033769           72 TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST  111 (112)
Q Consensus        72 ~l~~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~sl~  111 (112)
                      .+.+|++..=..      -+..--|.+|..|+++||.+..
T Consensus        87 kvEKWf~RNC~d------v~gReCTa~EKgD~l~~L~sq~  120 (124)
T d1gu2a_          87 KVEDEFTKHCND------ILGADCSPSEKANFIAYLLTET  120 (124)
T ss_dssp             HHHHHHHHHHHH------HHSSCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhhcHh------hhcccCCHHHhhhHHHHHHhcc
Confidence            677776432110      1223347999999999998864

>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: SHP, an oxygen binding cytochrome c
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.06  E-value=1.9e-06  Score=49.64  Aligned_cols=83  Identities=19%  Similarity=0.392  Sum_probs=46.7

Q ss_pred             CCCCCHHHHHHHHHh----------hCcccccccCCCC--CCCCCCCCCccCCCCCCCCCCccchhccccceeeCHHHHH
Q 033769            7 APPGNPKAGEKIFKT----------KCAQCHTVVKGAG--HKQGPNLNGLFGRQSGTTPGYSYSAANKGMAVIWEEKTLY   74 (112)
Q Consensus         7 ~~~~~~~~G~~lf~~----------~C~~CH~~~~~~~--~~~gP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   74 (112)
                      ....++++|+++|..          .|++||+.+....  ...|..+.-+..    ....-+|+          +.+.+.
T Consensus        17 ~~~~sa~rG~~lf~~~~~~~~g~~~sCasCH~~~p~~~G~~~TgK~I~PlAp----s~np~Rft----------D~akVE   82 (112)
T d1dw0a_          17 GAPADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLAP----SATPDRFT----------DSARVE   82 (112)
T ss_dssp             TSCCCHHHHHHHHHCCCSSSCTTCCSTHHHHCSSTTSCEECTTSCEECCSST----TTSTTTTC----------CHHHHH
T ss_pred             cCCCCHHHHHHHHHhcccCCCCCCCccccccCCCCCcCCcccCCCCccccCC----ccChhhhc----------CHHHHH
Confidence            345789999999963          4999999764221  112222221111    11111222          556677


Q ss_pred             HHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 033769           75 DYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE  109 (112)
Q Consensus        75 ~~l~~~~~~~~~~~m~~~~~l~~~ei~~l~ayl~s  109 (112)
                      +|++..=..      -+..-=|.+|..|+++||.+
T Consensus        83 KWF~RNC~d------VlgReCTa~EKgD~l~~L~s  111 (112)
T d1dw0a_          83 KWLGRNCNS------VIGRDCTPGEKADLLAWLAA  111 (112)
T ss_dssp             HHHHHHHHH------HHSSCCCHHHHHHHHHHHHT
T ss_pred             HHHHhhchh------hhccccCHHHhhhHHHHHhc
Confidence            776432110      12233479999999999986

>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=97.71  E-value=2.4e-05  Score=45.45  Aligned_cols=17  Identities=12%  Similarity=0.126  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHHHhhcC
Q 033769           96 KPQDRADLIAYLKESTA  112 (112)
Q Consensus        96 ~~~ei~~l~ayl~sl~~  112 (112)
                      ..+|+.+|++||..+++
T Consensus        84 ~s~e~~aL~aYi~~~s~  100 (111)
T d1h32a2          84 GSPEFVALELYVASRGN  100 (111)
T ss_dssp             TCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            36789999999998864

>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=9.2e-06  Score=51.75  Aligned_cols=25  Identities=20%  Similarity=0.587  Sum_probs=20.7

Q ss_pred             CCCCCCCHHHHHHHHHhhCcccccc
Q 033769            5 EEAPPGNPKAGEKIFKTKCAQCHTV   29 (112)
Q Consensus         5 ~~~~~~~~~~G~~lf~~~C~~CH~~   29 (112)
                      .....+++.+|.++|..+|++||++
T Consensus        19 g~~DkaSLQRGaqvf~nyC~gCHsl   43 (195)
T d1ppjd1          19 SSLDHTSIRRGFQVYKQVCSSCHSM   43 (195)
T ss_dssp             CCCCHHHHHHHHHHHHHTGGGTCCC
T ss_pred             ccccHHHHHhHHHHHHHHHhhccch
Confidence            3344567899999999999999995

>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=1e-05  Score=51.66  Aligned_cols=26  Identities=23%  Similarity=0.595  Sum_probs=21.4

Q ss_pred             CCCCCCCHHHHHHHHHhhCccccccc
Q 033769            5 EEAPPGNPKAGEKIFKTKCAQCHTVV   30 (112)
Q Consensus         5 ~~~~~~~~~~G~~lf~~~C~~CH~~~   30 (112)
                      .....+++.+|.++|..+|++||++.
T Consensus        22 g~~DkasLQRG~qvy~~~C~~CHsl~   47 (199)
T d3cx5d1          22 ETFDHASIRRGYQVYREVCAACHSLD   47 (199)
T ss_dssp             CCCCHHHHHHHHHHHHHTGGGTCCCT
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccch
Confidence            34445678999999999999999974

>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.80  E-value=0.00057  Score=41.46  Aligned_cols=20  Identities=25%  Similarity=0.688  Sum_probs=15.2

Q ss_pred             CHHHHHHHHHh---------hCccccccc
Q 033769           11 NPKAGEKIFKT---------KCAQCHTVV   30 (112)
Q Consensus        11 ~~~~G~~lf~~---------~C~~CH~~~   30 (112)
                      .++-|+.||..         .|++||...
T Consensus        18 ~~~LGk~LF~D~~LS~~~~~SCasCH~~~   46 (150)
T d1iqca1          18 MAELGKMLFFDPRLSKSGFISCNSCHNLS   46 (150)
T ss_dssp             HHHHHHHHHTCGGGSSSSCCCHHHHSBTT
T ss_pred             HHHHHHHHhCCcccCCCCCCCcccccChh
Confidence            35789999932         499999764

>d1h32a1 a.3.1.8 (A:1-150) Di-heme cytochrome c SoxA {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c SoxA
domain: Di-heme cytochrome c SoxA
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=96.27  E-value=0.00047  Score=41.87  Aligned_cols=16  Identities=13%  Similarity=0.258  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHhhcC
Q 033769           97 PQDRADLIAYLKESTA  112 (112)
Q Consensus        97 ~~ei~~l~ayl~sl~~  112 (112)
                      .+|+.+|.+||+.+++
T Consensus       128 S~em~aL~aYi~~~S~  143 (150)
T d1h32a1         128 GPDMTAMVALIASVSR  143 (150)
T ss_dssp             SHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            6789999999998864

>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.16  E-value=0.011  Score=36.12  Aligned_cols=15  Identities=13%  Similarity=0.014  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHhhc
Q 033769           97 PQDRADLIAYLKEST  111 (112)
Q Consensus        97 ~~ei~~l~ayl~sl~  111 (112)
                      +.-..+|++|.++|-
T Consensus       150 ~~i~~Alaaf~rtlv  164 (166)
T d1nmla1         150 DNMAVAIEAYEATLI  164 (166)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcc
Confidence            445779999999984

>d1eb7a1 a.3.1.5 (A:1-164) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.80  E-value=0.016  Score=35.32  Aligned_cols=21  Identities=33%  Similarity=0.725  Sum_probs=16.0

Q ss_pred             CCHHHHHHHHHh---------hCccccccc
Q 033769           10 GNPKAGEKIFKT---------KCAQCHTVV   30 (112)
Q Consensus        10 ~~~~~G~~lf~~---------~C~~CH~~~   30 (112)
                      +.++-|+.||-.         .|++||...
T Consensus        29 ~k~~LGk~LF~D~~LS~~~~~SCaSCH~~~   58 (164)
T d1eb7a1          29 QQRELGKKLFFDPRLSRSHVLSCNTCHNVG   58 (164)
T ss_dssp             HHHHHHHHHHHCGGGSTTSCCCHHHHSCTT
T ss_pred             HHHHHHHHHhCCcccCCCCCCCCccccCcc
Confidence            456789999942         399999864

>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.97  E-value=0.056  Score=28.62  Aligned_cols=13  Identities=23%  Similarity=0.807  Sum_probs=10.1

Q ss_pred             HHHHhhCcccccc
Q 033769           17 KIFKTKCAQCHTV   29 (112)
Q Consensus        17 ~lf~~~C~~CH~~   29 (112)
                      +.|.+.|+.||+.
T Consensus         9 ~~~~~mCaRCHS~   21 (80)
T d1pbya2           9 TSMTQTCGRCHSY   21 (80)
T ss_dssp             HHHHHHHSSSSCT
T ss_pred             hHHHHHHHhhhhh
Confidence            3566789999984

>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Pseudomonas putida [TaxId: 303]

Probab=87.68  E-value=0.062  Score=28.15  Aligned_cols=12  Identities=25%  Similarity=0.816  Sum_probs=9.5

Q ss_pred             HHHhhCcccccc
Q 033769           18 IFKTKCAQCHTV   29 (112)
Q Consensus        18 lf~~~C~~CH~~   29 (112)
                      .|.+.|+.||+.
T Consensus        10 ~~~~mCaRCHS~   21 (77)
T d1jmxa2          10 QLSETCGRCHSG   21 (77)
T ss_dssp             HHHHHHSSSSCS
T ss_pred             HHHHHHHhhhhh
Confidence            367789999974