Citrus Sinensis ID: 033781

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccEEEEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLqaghanedgmlgsretnASAKYVILEeiddldegt
Flexible Loop (DISEMBL)
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVIleeiddldegt
Low Complexity Region (SEG)
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT
Disordered region (IsUnstruct)
*****ALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH****************KYVIL**********
Disordered Region (DISOPRED)
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW*****************************************
Disordered Region (DISEMBL)
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT
Disordered Region (DISPRO)
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQA****************SAKYVILEEID******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q8H184	414	Probable sugar phosphate/	yes	no	0.945	0.253	0.707	8e-35
Q10354	374	Uncharacterized transport	yes	no	0.828	0.245	0.300	4e-09
Q9NQQ7	365	Solute carrier family 35	no	no	0.693	0.210	0.378	7e-06
Q8VCX2	364	Solute carrier family 35	no	no	0.603	0.184	0.361	0.0003

>sp|Q8H184|PT106_ARATH Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1

 Score =  145 bits (366), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 84/106 (79%), Gaps = 1/106 (0%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GGALAF MV TE+VLVSVTSAVTV IA VVKEAV I+VAVFYFHDEFTWLKG GL  
Sbjct: 305 MLFGGALAFCMVLTEYVLVSVTSAVTVTIAGVVKEAVTIVVAVFYFHDEFTWLKGVGLMI 364

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDD 106
           I+VGVSLFNWYKY KLQ GH  E+     +  + + KYVIL+E+DD
Sbjct: 365 IMVGVSLFNWYKYDKLQKGHKTEEEK-QLQAPSQTGKYVILDEMDD 409

Arabidopsis thaliana (taxid: 3702)

>sp|Q10354|YDB1_SCHPO Uncharacterized transporter C22E12.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22E12.01 PE=3 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 11/103 (10%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           +L  G LAFFMV++EF L+  TS VT+ +  ++KE + I+ +  ++HD    +   GL  
Sbjct: 281 ILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVI 340

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEE 103
            L G+ ++N+Y+  K              +E     +Y++L E
Sbjct: 341 TLCGIGVYNYYRITKGN-----------KKEAEKEVEYIVLNE 372

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9NQQ7|S35C2_HUMAN Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 4   GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILV 63
           GG LAF +  +EF+LVS TS++T+ IA + KE   +L+A     D+ + L   G    L 
Sbjct: 249 GGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLS 308

Query: 64  GVSLFNWYKYQKLQAGHANEDG 85
           G+SL     +  L+A H+  DG
Sbjct: 309 GISL-----HVALKALHSRGDG 325

May play an important role in the cellular response to tissue hypoxia.

Homo sapiens (taxid: 9606)

>sp|Q8VCX2|S35C2_MOUSE Solute carrier family 35 member C2 OS=Mus musculus GN=Slc35c2 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 14  TEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 73
           +EF+LVS TS++T+ IA + KE   +L+A     D+ + L   G    L G+SL     +
Sbjct: 259 SEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISL-----H 313

Query: 74  QKLQAGHANEDG 85
             L+A H+  DG
Sbjct: 314 VALKALHSRGDG 325

May play an important role in the cellular response to tissue hypoxia.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
224121440	409	predicted protein [Populus trichocarpa]	1.0	0.271	0.720	1e-38
302143479	529	unnamed protein product [Vitis vinifera]	1.0	0.209	0.686	3e-37
359485471	510	PREDICTED: probable sugar phosphate/phos	1.0	0.217	0.686	4e-37
255569841	519	Triose phosphate/phosphate translocator,	1.0	0.213	0.711	8e-37
357125272	431	PREDICTED: probable sugar phosphate/phos	0.972	0.250	0.688	8e-36
222634967	401	hypothetical protein OsJ_20151 [Oryza sa	0.972	0.269	0.697	1e-35
215704227	431	unnamed protein product [Oryza sativa Ja	0.972	0.250	0.697	1e-35
297605201	471	Os06g0153200 [Oryza sativa Japonica Grou	0.972	0.229	0.697	2e-35
326505650	432	predicted protein [Hordeum vulgare subsp	0.990	0.254	0.678	2e-35
359485467	1044	PREDICTED: G-type lectin S-receptor-like	0.945	0.100	0.669	3e-35

>gi|224121440|ref|XP_002330828.1| predicted protein [Populus trichocarpa] gi|222872630|gb|EEF09761.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 89/111 (80%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           M  GG LAFFMV TEFVL+SVTSAVTV IA VVKEAV ILVAV YFHD+FTWLKG GL  
Sbjct: 299 MFFGGTLAFFMVLTEFVLISVTSAVTVTIAGVVKEAVTILVAVIYFHDKFTWLKGAGLLI 358

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT 111
           I+VGV LFNWYKYQKLQ G  +E+   GS  TN + KYVIL+E+DDLD+GT
Sbjct: 359 IMVGVGLFNWYKYQKLQKGQTSENDSAGSSPTNVATKYVILDEMDDLDDGT 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143479|emb|CBI22040.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 94/118 (79%), Gaps = 7/118 (5%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GG LAFFMV TE++LVSVTSAVTV IA VVKEAV ILVAVFYFHD+FTWLKG GL T
Sbjct: 412 MLIGGTLAFFMVLTEYILVSVTSAVTVTIAGVVKEAVTILVAVFYFHDQFTWLKGVGLST 471

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGM-------LGSRETNASAKYVILEEIDDLDEGT 111
           I+VGVSLFNWYKY KLQ GH+NE  M        GS ++N +A+YVILEE+D+ ++ T
Sbjct: 472 IMVGVSLFNWYKYLKLQTGHSNEVDMGDTAGDIAGSLKSNINARYVILEEVDEQEDST 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485471|ref|XP_002277992.2| PREDICTED: probable sugar phosphate/phosphate translocator At1g06470-like [Vitis vinifera]

 Score =  158 bits (400), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 94/118 (79%), Gaps = 7/118 (5%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GG LAFFMV TE++LVSVTSAVTV IA VVKEAV ILVAVFYFHD+FTWLKG GL T
Sbjct: 393 MLIGGTLAFFMVLTEYILVSVTSAVTVTIAGVVKEAVTILVAVFYFHDQFTWLKGVGLST 452

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGM-------LGSRETNASAKYVILEEIDDLDEGT 111
           I+VGVSLFNWYKY KLQ GH+NE  M        GS ++N +A+YVILEE+D+ ++ T
Sbjct: 453 IMVGVSLFNWYKYLKLQTGHSNEVDMGDTAGDIAGSLKSNINARYVILEEVDEQEDST 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569841|ref|XP_002525884.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis] gi|223534798|gb|EEF36488.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 86/111 (77%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           M  GG LAFFMV TE+VL+SVTSAVTV IA VVKEAV ILVAVFYFHDEFTWLKG GL  
Sbjct: 409 MFFGGTLAFFMVLTEYVLISVTSAVTVTIAGVVKEAVTILVAVFYFHDEFTWLKGVGLLI 468

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT 111
           I+VGVSLFNWYKY KLQ     ED +  S E   SAKYVILEE+DD D+ +
Sbjct: 469 IMVGVSLFNWYKYHKLQKHQIGEDDLAESPEATISAKYVILEEMDDQDDTS 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125272|ref|XP_003564319.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g06470-like [Brachypodium distachyon]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 89/109 (81%), Gaps = 1/109 (0%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GG+LAFFMV TE++LVS TSA+TV IA VVKE+V ILVAVFYFHDEFTWLKGFGL T
Sbjct: 318 MLIGGSLAFFMVLTEYILVSATSAITVTIAGVVKESVTILVAVFYFHDEFTWLKGFGLIT 377

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDE 109
           I+VGVSLFNWYKY+K + GH NED  + S   N  AKY+IL++++  DE
Sbjct: 378 IMVGVSLFNWYKYEKFKKGHINEDE-VSSSSFNGDAKYIILDDLEYQDE 425

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222634967|gb|EEE65099.1| hypothetical protein OsJ_20151 [Oryza sativa Japonica Group]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 88/109 (80%), Gaps = 1/109 (0%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GG LAFFMV TE+VLVS TSA+TV IA VVKEAV ILVAVFYFHDEFTWLKG GL T
Sbjct: 288 MLVGGTLAFFMVLTEYVLVSATSAITVTIAGVVKEAVTILVAVFYFHDEFTWLKGLGLAT 347

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDE 109
           I+VGVSLFNWYKY+K + GH NED  + S   +  AKY+IL++++D DE
Sbjct: 348 IMVGVSLFNWYKYEKYKKGHINEDE-VNSPSFDGDAKYIILDDLEDQDE 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215704227|dbj|BAG93067.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 88/109 (80%), Gaps = 1/109 (0%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GG LAFFMV TE+VLVS TSA+TV IA VVKEAV ILVAVFYFHDEFTWLKG GL T
Sbjct: 318 MLVGGTLAFFMVLTEYVLVSATSAITVTIAGVVKEAVTILVAVFYFHDEFTWLKGLGLAT 377

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDE 109
           I+VGVSLFNWYKY+K + GH NED  + S   +  AKY+IL++++D DE
Sbjct: 378 IMVGVSLFNWYKYEKYKKGHINEDE-VNSPSFDGDAKYIILDDLEDQDE 425

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297605201|ref|NP_001056840.2| Os06g0153200 [Oryza sativa Japonica Group] gi|255676729|dbj|BAF18754.2| Os06g0153200, partial [Oryza sativa Japonica Group]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 88/109 (80%), Gaps = 1/109 (0%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GG LAFFMV TE+VLVS TSA+TV IA VVKEAV ILVAVFYFHDEFTWLKG GL T
Sbjct: 358 MLVGGTLAFFMVLTEYVLVSATSAITVTIAGVVKEAVTILVAVFYFHDEFTWLKGLGLAT 417

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDE 109
           I+VGVSLFNWYKY+K + GH NED  + S   +  AKY+IL++++D DE
Sbjct: 418 IMVGVSLFNWYKYEKYKKGHINEDE-VNSPSFDGDAKYIILDDLEDQDE 465

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505650|dbj|BAJ95496.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 91/115 (79%), Gaps = 5/115 (4%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           ML GG+LAFFMV TE++LVS TSA+TV IA VVKEAV ILVAVFYFHDEFTWLKG GL T
Sbjct: 319 MLIGGSLAFFMVLTEYILVSATSAITVTIAGVVKEAVTILVAVFYFHDEFTWLKGVGLTT 378

Query: 61  ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDD----LDEGT 111
           I+VGVSLFNWYKY+K + G  NEDG L S   +  AKY+IL++++D    LDE T
Sbjct: 379 IMVGVSLFNWYKYEKFKKGQINEDG-LDSPSFSGDAKYIILDDLEDEDGFLDEDT 432

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485467|ref|XP_002277954.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like [Vitis vinifera]

 Score =  152 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 90/112 (80%), Gaps = 7/112 (6%)

Query: 7    LAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVS 66
            LA ++V TE++LVSVTSAVTV IA VVKEAV ILVAVFYFHD+FTWLKG GLFTI+VGVS
Sbjct: 933  LATYLVLTEYILVSVTSAVTVTIAGVVKEAVTILVAVFYFHDQFTWLKGVGLFTIMVGVS 992

Query: 67   LFNWYKYQKLQAGHANEDGM-------LGSRETNASAKYVILEEIDDLDEGT 111
            LFNWYKY KLQ GH+NE  M        GS ++N +A+YVILEE+D+ ++ T
Sbjct: 993  LFNWYKYLKLQTGHSNEVDMGDAAGDIAGSLKSNINARYVILEEVDEQEDST 1044

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:2009190	414	AT1G06470 [Arabidopsis thalian	0.945	0.253	0.707	1.5e-33
POMBASE|SPAC22E12.01	374	SPAC22E12.01 "triose phosphate	0.675	0.200	0.36	1e-09
ASPGD|ASPL0000010621	582	AN3948 [Emericella nidulans (t	0.720	0.137	0.378	1.6e-08
MGI|MGI:2385166	364	Slc35c2 "solute carrier family	0.720	0.219	0.376	3.1e-07
UNIPROTKB|I3LL24	364	SLC35C2 "Uncharacterized prote	0.693	0.211	0.390	4e-07
UNIPROTKB|F1N141	336	F1N141 "Uncharacterized protei	0.693	0.229	0.390	4.4e-07
CGD|CAL0002300	396	orf19.6480 [Candida albicans (	0.801	0.224	0.277	6e-07
UNIPROTKB|Q5AH57	396	YMD8 "Potential nucleotide-sug	0.801	0.224	0.277	6e-07
UNIPROTKB|Q9NQQ7	365	SLC35C2 "Solute carrier family	0.693	0.210	0.378	8.6e-07
UNIPROTKB|E2RPV5	368	SLC35C2 "Uncharacterized prote	0.693	0.209	0.378	8.7e-07

TAIR|locus:2009190 AT1G06470 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 75/106 (70%), Positives = 84/106 (79%)

Query:     1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
             ML GGALAF MV TE+VLVSVTSAVTV IA VVKEAV I+VAVFYFHDEFTWLKG GL  
Sbjct:   305 MLFGGALAFCMVLTEYVLVSVTSAVTVTIAGVVKEAVTIVVAVFYFHDEFTWLKGVGLMI 364

Query:    61 ILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDD 106
             I+VGVSLFNWYKY KLQ GH  E+     +  + + KYVIL+E+DD
Sbjct:   365 IMVGVSLFNWYKYDKLQKGHKTEEEKQ-LQAPSQTGKYVILDEMDD 409

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

POMBASE|SPAC22E12.01 SPAC22E12.01 "triose phosphate transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 147 (56.8 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 27/75 (36%), Positives = 46/75 (61%)

Query:     1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
             +L  G LAFFMV++EF L+  TS VT+ +  ++KE + I+ +  ++HD    +   GL  
Sbjct:   281 ILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVI 340

Query:    61 ILVGVSLFNWYKYQK 75
              L G+ ++N+Y+  K
Sbjct:   341 TLCGIGVYNYYRITK 355

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035436 "triose phosphate transmembrane transport" evidence=ISM

GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=ISM

ASPGD|ASPL0000010621 AN3948 [Emericella nidulans (taxid:162425)]

 Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query:     5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVG 64
             G LAF M+S+EF L+  +S VT+ I  + KE V I  A   FHD+ T +   GL   +  
Sbjct:   374 GVLAFCMISSEFALLKRSSVVTLSICGIFKEVVTITAAGVIFHDKLTAVNVTGLIVTIGS 433

Query:    65 VSLFNWYKYQKL--QAGHANED 84
             ++ +N+ K  K+  +A H N D
Sbjct:   434 IASYNYMKVSKMRAEAQHNNWD 455

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2385166 Slc35c2 "solute carrier family 35, member C2" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 32/85 (37%), Positives = 48/85 (56%)

Query:     1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
             +L GG LAF +  +EF+LVS TS++T+ IA + KE   +L+A     D+ + L   G   
Sbjct:   246 LLLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFAL 305

Query:    61 ILVGVSLFNWYKYQKLQAGHANEDG 85
              L G+SL     +  L+A H+  DG
Sbjct:   306 CLSGISL-----HVALKALHSRGDG 325

GO:0003674 "molecular_function" evidence=ND

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0036065 "fucosylation" evidence=IDA

GO:0036066 "protein O-linked fucosylation" evidence=IMP;IDA

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IDA

UNIPROTKB|I3LL24 SLC35C2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 32/82 (39%), Positives = 46/82 (56%)

Query:     4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILV 63
             GG LAF +  +EF+LVS TS++T+ IA + KE   +L+A     D+ + L   G    L 
Sbjct:   249 GGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLS 308

Query:    64 GVSLFNWYKYQKLQAGHANEDG 85
             G+SL     +  L+A HA  DG
Sbjct:   309 GISL-----HVALKALHARGDG 325

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N141 F1N141 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 32/82 (39%), Positives = 46/82 (56%)

Query:     4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILV 63
             GG LAF +  +EF+LVS TS++T+ IA + KE   +L+A     D+ + L   G    L 
Sbjct:   220 GGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLS 279

Query:    64 GVSLFNWYKYQKLQAGHANEDG 85
             G+SL     +  L+A HA  DG
Sbjct:   280 GISL-----HIALKALHARGDG 296

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

CGD|CAL0002300 orf19.6480 [Candida albicans (taxid:5476)]

 Score = 122 (48.0 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 28/101 (27%), Positives = 53/101 (52%)

Query:     5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVG 64
             G LAF M   EF L++V   +T+ +A + KE + I+++   F D+ + +   GL    + 
Sbjct:   307 GVLAFMMTLCEFKLLTVAQVITLSVAGIFKELLTIILSSIIFGDKLSLINILGLILTFMD 366

Query:    65 VSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEID 105
             +  +N+Y+Y      + NED        N ++K V+ E+++
Sbjct:   367 ILWYNYYRY------YENED------HNNGNSKSVLREDLE 395

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030137 "COPI-coated vesicle" evidence=IEA

GO:0015786 "UDP-glucose transport" evidence=IEA

UNIPROTKB|Q5AH57 YMD8 "Potential nucleotide-sugar transporter" [Candida albicans SC5314 (taxid:237561)]

 Score = 122 (48.0 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 28/101 (27%), Positives = 53/101 (52%)

Query:     5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVG 64
             G LAF M   EF L++V   +T+ +A + KE + I+++   F D+ + +   GL    + 
Sbjct:   307 GVLAFMMTLCEFKLLTVAQVITLSVAGIFKELLTIILSSIIFGDKLSLINILGLILTFMD 366

Query:    65 VSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEID 105
             +  +N+Y+Y      + NED        N ++K V+ E+++
Sbjct:   367 ILWYNYYRY------YENED------HNNGNSKSVLREDLE 395

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9NQQ7 SLC35C2 "Solute carrier family 35 member C2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query:     4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILV 63
             GG LAF +  +EF+LVS TS++T+ IA + KE   +L+A     D+ + L   G    L 
Sbjct:   249 GGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLS 308

Query:    64 GVSLFNWYKYQKLQAGHANEDG 85
             G+SL     +  L+A H+  DG
Sbjct:   309 GISL-----HVALKALHSRGDG 325

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

UNIPROTKB|E2RPV5 SLC35C2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query:     4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILV 63
             GG LAF +  +EF+LVS TS++T+ IA + KE   +L+A     D+ + L   G    L 
Sbjct:   249 GGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLS 308

Query:    64 GVSLFNWYKYQKLQAGHANEDG 85
             G+SL     +  L+A H+  DG
Sbjct:   309 GISL-----HVALKALHSRGDG 325

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H184	PT106_ARATH	No assigned EC number	0.7075	0.9459	0.2536	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1470076 hypothetical protein (409 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	6e-15
pfam08449	303	pfam08449, UAA, UAA transporter family	2e-04

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 65.7 bits (161), Expect = 6e-15
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 1   MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT 60
           +L  G LAF    + F L+  TS +T  +A  VK  V I+++V  F D  T+L   GL  
Sbjct: 80  LLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAI 139

Query: 61  ILVGVSLFNW 70
            ++GV L+++
Sbjct: 140 AILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 16  FVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 75
           F L+S   A+TV +   +++ V++L++V  F +  T  +  G   + +G+ L+ + K +K
Sbjct: 243 FYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYLKKKK 302

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.74
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.73
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.45
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.44
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.42
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.35
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.18
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.1
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.61
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.59
KOG1580	337	consensus UDP-galactose transporter related protei	98.46
PLN00411	358	nodulin MtN21 family protein; Provisional	97.99
KOG1581	327	consensus UDP-galactose transporter related protei	97.87
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.6
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.42
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.36
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.23
PRK11689	295	aromatic amino acid exporter; Provisional	97.17
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.14
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.99
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.88
PRK15430	296	putative chloramphenical resistance permease RarD;	96.77
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.75
PLN00411	358	nodulin MtN21 family protein; Provisional	96.74
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.61
PRK15430	296	putative chloramphenical resistance permease RarD;	96.59
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.49
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.48
PRK11272	292	putative DMT superfamily transporter inner membran	96.34
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.13
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.08
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	95.99
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.89
KOG1582	367	consensus UDP-galactose transporter related protei	95.76
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.71
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	95.57
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.55
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.37
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.29
COG2510	140	Predicted membrane protein [Function unknown]	95.28
PRK11431	105	multidrug efflux system protein; Provisional	95.22
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.22
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.96
COG2076	106	EmrE Membrane transporters of cations and cationic	94.92
PRK11689	295	aromatic amino acid exporter; Provisional	94.4
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	94.32
COG0697	292	RhaT Permeases of the drug/metabolite transporter	94.23
COG0697	292	RhaT Permeases of the drug/metabolite transporter	94.14
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	93.31
KOG3912	372	consensus Predicted integral membrane protein [Gen	93.04
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	92.76
KOG2766	336	consensus Predicted membrane protein [Function unk	92.24
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	92.18
PF05961	68	Chordopox_A13L: Chordopoxvirus A13L protein; Inter	91.83
PRK11272	292	putative DMT superfamily transporter inner membran	91.34
KOG2765	416	consensus Predicted membrane protein [Function unk	91.02
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	90.55
COG2962	293	RarD Predicted permeases [General function predict	87.82
KOG4510	346	consensus Permease of the drug/metabolite transpor	85.65
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	85.52
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	85.39
PHA03049	68	IMV membrane protein; Provisional	84.54
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	84.11
KOG4812	262	consensus Golgi-associated protein/Nedd4 WW domain	83.97
COG4736	60	CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Post	81.47
PF15361	152	RIC3: Resistance to inhibitors of cholinesterase h	81.12
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	80.86

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.74  E-value=1.5e-18  Score=121.24  Aligned_cols=69  Identities=33%  Similarity=0.565  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW   70 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~   70 (111)
                      +++|+++|++|+++|+++++|||+|++|+|++|+++++++|+++|+|++|+.+++|++++++|+++|+|
T Consensus        85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            579999999999999999999999999999999999999999999999999999999999999999975

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.73  E-value=1.3e-18  Score=138.28  Aligned_cols=75  Identities=28%  Similarity=0.456  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQ   77 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~   77 (111)
                      ++.+++|++|++.|+++++|||||++|+|++|+++.+++|+++|++|+|+.|.+|++++++|+.+|++.|.++++
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            455999999999999999999999999999999999999999999999999999999999999999999887643

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=6.9e-15  Score=115.86  Aligned_cols=81  Identities=25%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 033781            1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH   80 (111)
Q Consensus         1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~   80 (111)
                      |.++|+++|.+|+.+++.|+.||||||||.|+.|.+.+.++++.+.+|..+.++|.|.++.++|...|++.|..|+++++
T Consensus       258 mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~  337 (347)
T KOG1442|consen  258 MTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS  337 (347)
T ss_pred             HHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             C
Q 033781           81 A   81 (111)
Q Consensus        81 ~   81 (111)
                      +
T Consensus       338 ~  338 (347)
T KOG1442|consen  338 A  338 (347)
T ss_pred             c
Confidence            4

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=1.5e-13  Score=109.20  Aligned_cols=78  Identities=27%  Similarity=0.407  Sum_probs=71.9

Q ss_pred             ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCC-ccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781            1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHD-EFTWLKGFGLFTILVGVSLFNWYKYQKLQAG   79 (111)
Q Consensus         1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~-~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~   79 (111)
                      +.+||+++|.+|++.|+|...+|++|++++| +|+.+.+.+|.++|+| ++++.|.+|+.+.+.|.++|++.+.++++.+
T Consensus       231 ~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~  309 (314)
T KOG1444|consen  231 MLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP  309 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence            4689999999999999999999999999999 9999999999999998 7999999999999999999999998764433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.42  E-value=1.8e-13  Score=109.04  Aligned_cols=71  Identities=21%  Similarity=0.395  Sum_probs=68.4

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      +.+|+.+|++|.+.|++++++||+|++|++++|+++++++|+++|||++|+.+++|.+++++|+.+|++.|
T Consensus       280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            46899999999999999999999999999999999999999999999999999999999999999998764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.35  E-value=1.1e-12  Score=104.37  Aligned_cols=67  Identities=39%  Similarity=0.624  Sum_probs=65.4

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      .++|.++|++-+++|++..+||.+|.+|+|++|++.++++|.++-+|.+|.+||+|+.+++.|+..|
T Consensus       247 ~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  247 SLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999999999999999999888

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.18  E-value=2.5e-11  Score=93.82  Aligned_cols=69  Identities=26%  Similarity=0.407  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781            7 LAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK   75 (111)
Q Consensus         7 ~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~   75 (111)
                      ..++.|.+.|.+++++||.|.++.+.+|.++.+++|+++|||++|+.+++|.++++.|+.+|.+.|.+|
T Consensus       230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~  298 (302)
T TIGR00817       230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK  298 (302)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence            455677888999999999999999999999999999999999999999999999999999998766543

specificities overlap.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.10  E-value=1.5e-10  Score=90.09  Aligned_cols=74  Identities=23%  Similarity=0.317  Sum_probs=69.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK   75 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~   75 (111)
                      ++.++.+++.+.+.|.+++++||+|.++++++|+++++++|+++|++++++.+|+|+++++.|...|++.|++|
T Consensus       229 ~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  229 LLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            56788888889999999999999999999999999999999999999999999999999999999999888754

; GO: 0055085 transmembrane transport

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.61  E-value=4.2e-08  Score=76.20  Aligned_cols=80  Identities=18%  Similarity=0.217  Sum_probs=73.4

Q ss_pred             ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 033781            1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGH   80 (111)
Q Consensus         1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~   80 (111)
                      +++||++++...+++=||+..||+.|++.+|.+.+...-+.|.++|++|.++..+..+.+.+...+.|++.|.+|.|.||
T Consensus       227 m~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~  306 (309)
T COG5070         227 MFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK  306 (309)
T ss_pred             HHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999988877655444

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.59  E-value=8.4e-08  Score=76.01  Aligned_cols=73  Identities=23%  Similarity=0.405  Sum_probs=68.8

Q ss_pred             ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHH
Q 033781            1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY   73 (111)
Q Consensus         1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~   73 (111)
                      |+.+++..+++.=..|.+..+|++||.+++=++|+.+..++|+++|+||+|+..|+|..++++|.+.|+-...
T Consensus       245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~  317 (330)
T KOG1583|consen  245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN  317 (330)
T ss_pred             HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            4678899999999999999999999999999999999999999999999999999999999999999986654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.46  E-value=3e-07  Score=71.99  Aligned_cols=69  Identities=13%  Similarity=0.097  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY   71 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~   71 (111)
                      +=++.+.+=..+.|+.+...+|||.+|+-+.++..+|++|+++|++|++.++|+|.++.+.|...-..+
T Consensus       246 l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~  314 (337)
T KOG1580|consen  246 LLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD  314 (337)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence            345667777889999999999999999999999999999999999999999999999999998776555

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.99  E-value=2.7e-05  Score=62.86  Aligned_cols=62  Identities=13%  Similarity=0.153  Sum_probs=55.2

Q ss_pred             HHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781           14 TEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK   75 (111)
Q Consensus        14 s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~   75 (111)
                      .-++++++.+|...++.-.+--++..++|++++||++++..++|.++.+.|+....+-+.+|
T Consensus       272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            34558999999999999999999999999999999999999999999999998877644443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.87  E-value=8.4e-06  Score=65.21  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 033781            5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ   74 (111)
Q Consensus         5 g~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~   74 (111)
                      ++++-+=..+.|..|.+..|||+.+.-+.|+++.|.+|.++|++++++.+|+|+.+.+.|..+-.+.|.+
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            3445555667899999999999999999999999999999999999999999999999999888887766

>TIGR00803 nst UDP-galactose transporter

Probab=97.60  E-value=1.1e-05  Score=59.99  Aligned_cols=58  Identities=12%  Similarity=0.074  Sum_probs=53.6

Q ss_pred             HHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781           11 MVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus        11 ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      ..++..+++++.++++.+++..++.++.+++|+++||+++|+..++|..+++.|+..|
T Consensus       165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            3466889999999999999999999999999999999999999999999999987655

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.42  E-value=0.00026  Score=54.40  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=65.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY   71 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~   71 (111)
                      .+.+++..+.|...|..+....|.|+++....|-+.+-++++++++.+++..+|+++++.++|+....+.
T Consensus        21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~   90 (244)
T PF04142_consen   21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS   90 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence            4678999999999999999999999999999999999999999999999999999999999999765443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.36  E-value=0.00033  Score=45.92  Aligned_cols=62  Identities=18%  Similarity=0.328  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781            8 AFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         8 af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      ..+-+++-+..++++++-..++...+--+...++++++++|++++.+++|+++.++|+...+
T Consensus        64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46667778888999999999999999999999999999999999999999999999997654

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.23  E-value=0.00034  Score=56.41  Aligned_cols=63  Identities=17%  Similarity=0.463  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781           10 FMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus        10 ~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      +.....-.++..+||+.+|+.=-.-+...+++++++||.+++++-++|.++.++|.+.|+...
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            333344457899999999997777889999999999999999999999999999999997554

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.17  E-value=0.0012  Score=51.09  Aligned_cols=65  Identities=11%  Similarity=0.007  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781            8 AFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus         8 af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      ..+--+.-+..+++.+|.+.++...+-=++.+++|++++||++|+..++|.++.++|+....+.+
T Consensus       225 t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~  289 (295)
T PRK11689        225 MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT  289 (295)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence            33344555788999999999999999999999999999999999999999999999997776544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.14  E-value=0.00088  Score=51.86  Aligned_cols=59  Identities=10%  Similarity=0.116  Sum_probs=54.3

Q ss_pred             HHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781           14 TEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus        14 s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      .-+..+++.+|-+.++...+--+..+++|+++|||++++.+++|.++.+.|++.+.+..
T Consensus       225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            34678999999999999999999999999999999999999999999999999997553

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.99  E-value=0.0031  Score=42.45  Aligned_cols=69  Identities=22%  Similarity=0.362  Sum_probs=53.4

Q ss_pred             hhHHHHH-HHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781            3 SGGALAF-FMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus         3 ~sg~~af-~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      +.|++.+ .-+...++.++..++ ...+.-.+--++..++|+++|+|+++..+++|+.++++|++.-.+-.
T Consensus        39 ~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   39 LAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            3455555 445555566666665 55577777888899999999999999999999999999998776543

>TIGR00688 rarD rarD protein

Probab=96.88  E-value=0.0023  Score=48.28  Aligned_cols=65  Identities=14%  Similarity=0.145  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL   67 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~   67 (111)
                      +.|++.+..+.+-|..++.+++-+-++....=-+.+.++++++++|+++.++++|+++.++|+..
T Consensus        75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l  139 (256)
T TIGR00688        75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS  139 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            46667777788888999999999999999999999999999999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.77  E-value=0.0069  Score=46.93  Aligned_cols=67  Identities=12%  Similarity=0.041  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHH
Q 033781            7 LAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY   73 (111)
Q Consensus         7 ~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~   73 (111)
                      .+..-.++-+..+++.+|-+.++...+.-++.+++|++++||++++.+++|+++.+.|+......-.
T Consensus       222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~  288 (296)
T PRK15430        222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI  288 (296)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455777889999999999999999999999999999999999999999999888877765533

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.75  E-value=0.0038  Score=46.56  Aligned_cols=67  Identities=13%  Similarity=-0.015  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      .+++...+.+.+.|..++++++-+-++.-...-+.+.++++++++|+++..+++|+.+.++|+....
T Consensus        52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~  118 (260)
T TIGR00950        52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL  118 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence            3444456667788889999998888999999999999999999999999999999999999987764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.74  E-value=0.0033  Score=50.85  Aligned_cols=71  Identities=17%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhhee------cCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFY------FHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~------F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      ++.|+++++.+...|.-++.|||-.-++....--+.+.++++++      ++|+++..+++|++++++|+..-..++
T Consensus        82 ~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411         82 GLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            35677777777788999999999999999999999999999999      799999999999999999998766544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.61  E-value=0.0046  Score=46.11  Aligned_cols=56  Identities=13%  Similarity=0.130  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHH
Q 033781           10 FMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGV   65 (111)
Q Consensus        10 ~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~   65 (111)
                      .-...-+..+++.++-+.++...+.-+..+++++++++|++++..++|..+.+.|+
T Consensus       204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            33445677899999999999999999999999999999999999999999999885

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.59  E-value=0.0056  Score=47.46  Aligned_cols=67  Identities=12%  Similarity=0.134  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      ++++..+..+.+-|+.++.+++-.-++....--+.+.++++++++|+++..+++|+++.++|+....
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            4455556678888999999999999999999999999999999999999999999999999987643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.49  E-value=0.0054  Score=47.35  Aligned_cols=65  Identities=17%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL   67 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~   67 (111)
                      ..|++..+.+...+..++.+|+-+.++.-..--+.+.++++++++|+++...++|+++.++|+..
T Consensus        70 ~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l  134 (302)
T TIGR00817        70 PVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL  134 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh
Confidence            45666677788899999999999999999999999999999999999999999998888888753

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.48  E-value=0.0075  Score=46.24  Aligned_cols=68  Identities=10%  Similarity=0.035  Sum_probs=57.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      +++|+......++.+...+.+++-.-.+.....-+...++|+++|+|+++..+++|+++.+.|+..-.
T Consensus        67 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        67 AISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            34666667777777888888888777777788899999999999999999999999999999987543

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.34  E-value=0.014  Score=45.09  Aligned_cols=60  Identities=18%  Similarity=0.108  Sum_probs=53.5

Q ss_pred             HHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781           13 STEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus        13 ~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      ..-+..+++.++-+.++...+.-+...++|++++||++|+..++|.++.+.|+...++.+
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            455667889999999999999999999999999999999999999999999998776543

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.13  E-value=0.017  Score=44.75  Aligned_cols=56  Identities=16%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             HHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781           17 VLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus        17 ~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      ..+++..|-+.++...+-=++.+++|++++||++++..++|.++.++|+..-.+-+
T Consensus       234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        234 TLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            45678888888999999999999999999999999999999999999997655443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.08  E-value=0.02  Score=39.97  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhhcccce--ehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781            7 LAFFMVSTEFVLVSVTSAV--TVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus         7 ~af~ln~s~f~~i~~tS~L--T~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      ..+.+.+..+...-+.=|+  .+.+-.-+-.+.+.++|+++|+|++|+.+++|+++.++|++.-
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l  101 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI  101 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            3344444433333333333  3455455677888999999999999999999999999999776

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=95.99  E-value=0.014  Score=44.67  Aligned_cols=63  Identities=10%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781            5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL   67 (111)
Q Consensus         5 g~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~   67 (111)
                      ++...+-...-+..+++..+-+.+....+--++.+++|+++|||+++...++|.++.++|+..
T Consensus       218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            344444445556778888887877777777899999999999999999999999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.89  E-value=0.041  Score=37.77  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=36.9

Q ss_pred             hhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781           27 VQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus        27 ~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      +.+-.-+-.+.+.++|+++|+|++++.+++|+.+.++|+.+-.
T Consensus        60 Yavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         60 YAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4444555778889999999999999999999999999998864

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.76  E-value=0.013  Score=47.08  Aligned_cols=68  Identities=18%  Similarity=0.297  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781            5 GALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus         5 g~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      ++.+|+=..+..-+|+...+++...+-+.++.++|++|+++|..|+|....-|..+.+.|+.+=.+-|
T Consensus       267 s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  267 SLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            45566666777889999999999999999999999999999999999998888888889986655444

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.71  E-value=0.036  Score=37.77  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=32.5

Q ss_pred             hhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781           33 VKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus        33 ~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      +--+.+.++|+++|||++|+.+++|+++.++|++.-
T Consensus        72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            566788899999999999999999999999998764

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=95.57  E-value=0.027  Score=45.08  Aligned_cols=66  Identities=12%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      .-|++++..++..+..++.+|+-..+++-..--+++.++++++++|+++...++|+++.++|+..-
T Consensus       119 p~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~  184 (350)
T PTZ00343        119 PQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALA  184 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhe
Confidence            456777777777778888888888888888888889999999999999999988888888887643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.55  E-value=0.021  Score=44.42  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ   74 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~   74 (111)
                      .-+++-++-+.+....+...|.=|+.+.=..|-+.+.++|+++++.+.+..+++++++..+|++.+++.+..
T Consensus        69 ~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~  140 (303)
T PF08449_consen   69 ILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS  140 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence            446677777888889999999999999999999999999999999999999999999999999988866543

; GO: 0055085 transmembrane transport

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=95.37  E-value=0.043  Score=38.55  Aligned_cols=65  Identities=22%  Similarity=0.268  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhH---HHHhhhhh--eecCCccchhhhhHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKE---AVNILVAV--FYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~---v~~i~~s~--~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      ..|+..+.+.+......-+.-|++  ++.-+=.   +...+.++  ++|||++|+.+++|+++.++|+..-+
T Consensus        52 ~lgl~~~~la~~~w~~aL~~~~ls--~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         52 LLGLAGYALSMLCWLKALRYLPLS--RAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            345555555555544444333433  2322222   23334444  48999999999999999999998764

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.29  E-value=0.085  Score=36.24  Aligned_cols=44  Identities=16%  Similarity=0.213  Sum_probs=38.3

Q ss_pred             eehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781           25 VTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus        25 LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      +.+.|-.-+-.+.+.++|+++|+|++|+.+++|+.+.++|+.+-
T Consensus        63 vAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         63 VAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            34566666777899999999999999999999999999999764

>COG2510 Predicted membrane protein [Function unknown]

Probab=95.28  E-value=0.027  Score=40.42  Aligned_cols=66  Identities=14%  Similarity=0.204  Sum_probs=46.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHH
Q 033781            2 LSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSL   67 (111)
Q Consensus         2 ~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~   67 (111)
                      .+||+.+=+--++-|+.++.--+=-..=.-..--++.+++|+++++|.+|..+++|+.+..+|...
T Consensus        71 ilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510          71 ILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence            467766666666666666542221111122334578899999999999999999999999999754

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.22  E-value=0.019  Score=39.23  Aligned_cols=45  Identities=7%  Similarity=0.077  Sum_probs=39.5

Q ss_pred             eehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781           25 VTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus        25 LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      +.+.+-.-+-.+.+.++|+++|+|++++.+++|+.+.++|+..-.
T Consensus        57 vaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         57 TAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            456666777889999999999999999999999999999998753

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.22  E-value=0.032  Score=45.05  Aligned_cols=69  Identities=14%  Similarity=0.249  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHH
Q 033781            4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK   72 (111)
Q Consensus         4 sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k   72 (111)
                      -|++=+.-|+......++||-.+.++....--+.+.++|++++++++++.+++|+++++.|++.-.+.-
T Consensus        85 la~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   85 LALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence            356777789999999999999999999999999999999999999999999999999999987765443

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.96  E-value=0.048  Score=44.43  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      +.+++..+.|...|.....-+|.|++|..++|-.-+-++++++.+.+++.++|.-+++.++|+..--
T Consensus        97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            5677888999999999999999999999999999999999999999999999999999999996543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=94.92  E-value=0.026  Score=38.86  Aligned_cols=45  Identities=27%  Similarity=0.313  Sum_probs=39.0

Q ss_pred             ehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781           26 TVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW   70 (111)
Q Consensus        26 T~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~   70 (111)
                      .+.|-+=+=.+.+.++|+++|+|++++.+++|+.+.+.|+..-..
T Consensus        59 AYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          59 AYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            456666777889999999999999999999999999999987543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=94.40  E-value=0.099  Score=40.44  Aligned_cols=65  Identities=23%  Similarity=0.267  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHhh----cccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781            5 GALAFFMVSTEFVLVS----VTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         5 g~~af~ln~s~f~~i~----~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      ++..+..+.+.|.-++    .+++.+.++....--+.+.++++++++|+++..+++|+++.++|+..-.
T Consensus        68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence            3333334444444443    3455555666677778888999999999999999999999999886543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=94.32  E-value=0.1  Score=40.57  Aligned_cols=68  Identities=9%  Similarity=0.025  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHHHHHHHhh-cccceehhhhhhhhHHHHhhhhheecCCccchhhh----hHHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVS-VTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKG----FGLFTILVGVSLFNW   70 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~-~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~----~Gi~~~~~G~~~Y~~   70 (111)
                      +.|++...-+.+-+.-.. ...+-+..+...+--++.++.|+++|||+.+++++    +|.++.+.|+..-..
T Consensus       216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            366664333444446666 88899999999999999999999999999999999    999999999876543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=94.23  E-value=0.12  Score=38.24  Aligned_cols=61  Identities=13%  Similarity=0.180  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781           11 MVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY   71 (111)
Q Consensus        11 ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~   71 (111)
                      --+.-+..+++.++...+......-+..+++++++++|+++...++|.++.+.|+......
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            3445566788888888888888888899999999999999999999999999999777644

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=94.14  E-value=0.13  Score=37.94  Aligned_cols=67  Identities=19%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhh-eecCCccchhhhhHHHHHHHHHHHHHH
Q 033781            4 GGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAV-FYFHDEFTWLKGFGLFTILVGVSLFNW   70 (111)
Q Consensus         4 sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~-~~F~~~~t~~~~~Gi~~~~~G~~~Y~~   70 (111)
                      .++.......+-|..++++++-+..+....--+.+.++++ ++++|+++...+.|+++.++|+..-..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~  143 (292)
T COG0697          76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILL  143 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheec
Confidence            3444455556666668889999998999899999999996 666999999999999998998876654

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=93.31  E-value=0.21  Score=36.75  Aligned_cols=64  Identities=17%  Similarity=0.151  Sum_probs=28.8

Q ss_pred             cCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCCCCCccCcccccccccccccccCCCC
Q 033781           46 FHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHA--NEDGMLGSRETNASAKYVILEEIDDLDEGT  111 (111)
Q Consensus        46 F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (111)
                      .+.+..-..+.-+++...-++.|..++..+.++.++  ...+....+..  +-...||+|.||+||.|
T Consensus        89 ~d~~~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~--~~Em~pL~~ddedeD~T  154 (163)
T PF06679_consen   89 PDSPMLKRALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAE--NVEMAPLEEDDEDEDST  154 (163)
T ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCCcc--cceecccCCCccccccc
Confidence            344443333333444444455565565554443222  22333333222  23455776656656654

Their function is unknown.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=93.04  E-value=0.047  Score=44.07  Aligned_cols=61  Identities=16%  Similarity=0.240  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781           11 MVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY   71 (111)
Q Consensus        11 ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~   71 (111)
                      .|++...+.++-|+-|-.+.-.+|..++-++++..+.|.+..++++|..+...|++.|.-.
T Consensus       275 fNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  275 FNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             eeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888899999999999999999999999999999999999999999999999999999754

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=92.76  E-value=0.088  Score=41.15  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=23.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHh
Q 033781           50 FTWLKGFGLFTILVGVSLFNWYKYQKL   76 (111)
Q Consensus        50 ~t~~~~~Gi~~~~~G~~~Y~~~k~~~~   76 (111)
                      -.++|++|+++.++|...|.+.|....
T Consensus       114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~  140 (254)
T PF07857_consen  114 SPWLNYIGVALVLVSGIIFSFIKSEEK  140 (254)
T ss_pred             hhHHHHHHHHHHHHHHHheeeecCCCC
Confidence            457899999999999999999887763

The region concerned is approximately 280 residues long.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=92.24  E-value=0.17  Score=40.54  Aligned_cols=61  Identities=20%  Similarity=0.361  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHH-----HHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781            6 ALAFFMVSTEF-----VLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus         6 ~~af~ln~s~f-----~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      .++|.+.++-|     .+++.+|+..+|+.=-.-+.-.+++  ..||-+++|+-.+..+..+.|.+.|
T Consensus       232 yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiY  297 (336)
T KOG2766|consen  232 YLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIY  297 (336)
T ss_pred             HHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEe
Confidence            34454444433     4678899988888766666655555  7899999999999999999999988

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=92.18  E-value=0.4  Score=37.09  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=40.2

Q ss_pred             HHHHHhhcc-cceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781           14 TEFVLVSVT-SAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus        14 s~f~~i~~t-S~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      ..|..++++ ++-.-++.-..--+.+.++++++++|+++.++++|+++.++|+..-.
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence            334445554 33233444555567888999999999999999999999999976544

>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses

Probab=91.83  E-value=0.23  Score=31.64  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 033781           55 GFGLFTILVGVSLFNWYKYQK   75 (111)
Q Consensus        55 ~~Gi~~~~~G~~~Y~~~k~~~   75 (111)
                      .++++++++|.+.|..|+.++
T Consensus         7 Li~ICVaii~lIlY~iYnr~~   27 (68)
T PF05961_consen    7 LIIICVAIIGLILYGIYNRKK   27 (68)
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            678999999999999998765

A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=91.34  E-value=0.62  Score=35.89  Aligned_cols=56  Identities=13%  Similarity=0.078  Sum_probs=40.2

Q ss_pred             HHHHHHHh-hcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781           12 VSTEFVLV-SVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus        12 n~s~f~~i-~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      +.+.+... ..+++-..++.-..--+.+.+++.+ |+|+++.+.++|+++.++|+..-
T Consensus        83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll  139 (292)
T PRK11272         83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLL  139 (292)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHH
Confidence            33444444 5555544566666677777788875 89999999999999999998654

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=91.02  E-value=0.28  Score=40.78  Aligned_cols=69  Identities=19%  Similarity=0.200  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY   71 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~   71 (111)
                      .=|.+=|+.|+..=..+..||.-..+|....-...++.+|.++-+|.+|+.+.+++++.+.|++.-+..
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~  232 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG  232 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence            347788999999999999999999999999999999999999999999999999999999998765544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=90.55  E-value=0.72  Score=30.25  Aligned_cols=56  Identities=14%  Similarity=0.139  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHhhccccee--hhhhhhhhHHHHhhhhheecCCccchhhhhHHHH
Q 033781            5 GALAFFMVSTEFVLVSVTSAVT--VQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFT   60 (111)
Q Consensus         5 g~~af~ln~s~f~~i~~tS~LT--~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~   60 (111)
                      ++.++.+++.-+...-+.=|+.  +.+-.-+-.+.+.++|+++|||++|+.+++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            3445555555554444444433  3444555678899999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=87.82  E-value=1.3  Score=35.48  Aligned_cols=49  Identities=16%  Similarity=0.203  Sum_probs=41.3

Q ss_pred             hhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 033781           31 AVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAG   79 (111)
Q Consensus        31 G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~~~~~   79 (111)
                      .-+--.++.++++++|||+++.-+....+..-+|++.|++-...+.+++
T Consensus       244 qYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~  292 (293)
T COG2962         244 QYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKK  292 (293)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445567889999999999999999999999999999999887665543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=85.65  E-value=0.38  Score=38.75  Aligned_cols=67  Identities=19%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHH
Q 033781            3 SGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFN   69 (111)
Q Consensus         3 ~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~   69 (111)
                      +=|+++|.--+-.|.....-|----.|.--.--++++++++++.+||+|..+.+|..+++.|+.+-.
T Consensus       102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            3345554444444443333322222233334568999999999999999999999999999997653

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=85.52  E-value=1.4  Score=36.12  Aligned_cols=61  Identities=10%  Similarity=0.218  Sum_probs=49.4

Q ss_pred             HHHHhhcccceehhhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHHHHHHH
Q 033781           15 EFVLVSVTSAVTVQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK   75 (111)
Q Consensus        15 ~f~~i~~tS~LT~sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~~k~~~   75 (111)
                      .-+++++..-+...-+-.+--+++.+.|+.+|+-++|..-.+|..+++..+..|..+.++.
T Consensus       267 vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  267 VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            3445666666666666777788888999999999999999999999999999999666554

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=85.39  E-value=1.4  Score=34.18  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=40.0

Q ss_pred             HHHHHHHHhhcccceehh-hhhhhhHHHHhhhhheecCCccchhh----hhHHHHHHHHHHHHH
Q 033781           11 MVSTEFVLVSVTSAVTVQ-IAAVVKEAVNILVAVFYFHDEFTWLK----GFGLFTILVGVSLFN   69 (111)
Q Consensus        11 ln~s~f~~i~~tS~LT~s-V~G~~K~v~~i~~s~~~F~~~~t~~~----~~Gi~~~~~G~~~Y~   69 (111)
                      -|++-|..++.++.=+-. +...+--+...+.|.++|||+.+.++    ++|+++.++|.....
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            345566666654422221 11224444677899999999999988    999999999987763

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PHA03049 IMV membrane protein; Provisional

Probab=84.54  E-value=1.4  Score=28.00  Aligned_cols=21  Identities=10%  Similarity=0.357  Sum_probs=18.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 033781           55 GFGLFTILVGVSLFNWYKYQK   75 (111)
Q Consensus        55 ~~Gi~~~~~G~~~Y~~~k~~~   75 (111)
                      .++++++++|.+.|..|+.++
T Consensus         7 l~iICVaIi~lIvYgiYnkk~   27 (68)
T PHA03049          7 LVIICVVIIGLIVYGIYNKKT   27 (68)
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            578999999999999998754

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=84.11  E-value=2.6  Score=29.42  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=25.1

Q ss_pred             hhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHH
Q 033781           33 VKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLF   68 (111)
Q Consensus        33 ~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y   68 (111)
                      -|.+..+++|.+.++. -....++|..+...|++.-
T Consensus        69 GRGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i  103 (136)
T PF08507_consen   69 GRGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYI  103 (136)
T ss_pred             HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence            4678888899999988 2234567787777786543

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]

Probab=83.97  E-value=3.1  Score=32.68  Aligned_cols=64  Identities=19%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             ChhhHHHHHHHHHHHHHHhhcccceehhhhhhhhHH---HHhhhhhee---cCC----ccchhhhhHHHHHHHHHHH
Q 033781            1 MLSGGALAFFMVSTEFVLVSVTSAVTVQIAAVVKEA---VNILVAVFY---FHD----EFTWLKGFGLFTILVGVSL   67 (111)
Q Consensus         1 l~~sg~~af~ln~s~f~~i~~tS~LT~sV~G~~K~v---~~i~~s~~~---F~~----~~t~~~~~Gi~~~~~G~~~   67 (111)
                      |+++-++||+.|+..|++...   ||++++|.--.+   -+.++.|++   |.|    .+....|++.+++++|.++
T Consensus       163 F~~af~vAflFnwIGFlltyc---l~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll  236 (262)
T KOG4812|consen  163 FMWAFIVAFLFNWIGFLLTYC---LTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLL  236 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHH
Confidence            467889999999999998764   567777643322   223333332   233    2343456666666666554

>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=81.47  E-value=0.92  Score=28.21  Aligned_cols=18  Identities=17%  Similarity=0.294  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 033781           58 LFTILVGVSLFNWYKYQK   75 (111)
Q Consensus        58 i~~~~~G~~~Y~~~k~~~   75 (111)
                      +.++++|+++|.|-+.+|
T Consensus        18 ~~l~fiavi~~ayr~~~K   35 (60)
T COG4736          18 FTLFFIAVIYFAYRPGKK   35 (60)
T ss_pred             HHHHHHHHHHHHhcccch
Confidence            556777777777655443

>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3

Probab=81.12  E-value=2.9  Score=30.26  Aligned_cols=29  Identities=21%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             hhhHHH--HHHHHHHHHHHHHHHHhhhcCCC
Q 033781           54 KGFGLF--TILVGVSLFNWYKYQKLQAGHAN   82 (111)
Q Consensus        54 ~~~Gi~--~~~~G~~~Y~~~k~~~~~~~~~~   82 (111)
                      +++|.+  +|.+|++.|..|+..|..+++..
T Consensus        80 g~~~~imPlYtiGI~~f~lY~l~Ki~~~k~~  110 (152)
T PF15361_consen   80 GLMGQIMPLYTIGIVLFILYTLFKIKKKKDS  110 (152)
T ss_pred             chhhhHhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            344433  58899999999988876655543

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=80.86  E-value=2.6  Score=29.59  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=9.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCccCccccccccccccccc
Q 033781           56 FGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDL  107 (111)
Q Consensus        56 ~Gi~~~~~G~~~Y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (111)
                      +|+...++|+++..+|-.++++|++. .+..|  ..+++ ..-+||+..+-+
T Consensus        71 ~gv~aGvIg~Illi~y~irR~~Kk~~-~~~~p--~P~~~-d~~~p~~~~~~~  118 (122)
T PF01102_consen   71 FGVMAGVIGIILLISYCIRRLRKKSS-SDVQP--LPEED-DTDVPLSSVEIE  118 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC-CCCCC--CCCCC-CCCCCcceeeec
Confidence            34444444555544444444333322 22222  12221 345666655444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.52
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.75

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.52  E-value=0.00019  Score=50.00  Aligned_cols=66  Identities=14%  Similarity=0.104  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHhhcccceeh--hhhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781            5 GALAFFMVSTEFVLVSVTSAVTV--QIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW   70 (111)
Q Consensus         5 g~~af~ln~s~f~~i~~tS~LT~--sV~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~   70 (111)
                      |++++.+.+..+...-+.-|++.  .+...+--+++.++|+++|+|++|+.+++|+++.++|+.+...
T Consensus        36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            44444444444444444444443  2326778899999999999999999999999999999988764

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.75  E-value=0.0043  Score=41.13  Aligned_cols=66  Identities=14%  Similarity=0.104  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHhhcccceehh--hhhhhhHHHHhhhhheecCCccchhhhhHHHHHHHHHHHHHH
Q 033781            5 GALAFFMVSTEFVLVSVTSAVTVQ--IAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW   70 (111)
Q Consensus         5 g~~af~ln~s~f~~i~~tS~LT~s--V~G~~K~v~~i~~s~~~F~~~~t~~~~~Gi~~~~~G~~~Y~~   70 (111)
                      +++++.+.+.-+...-+.-|+...  +...+--+.+.++|+++|||++|+.+++|+++.+.|+.....
T Consensus        36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344444444444444445555543  334667888899999999999999999999999999987754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00