Citrus Sinensis ID: 033801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHcEEEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHcHHHHccccccccEEEEEEcccccccccEEEEc
Coil and Loop (DISEMBL)
mtkfrklnrptghrmSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSrirvgdaapmayie
Flexible Loop (DISEMBL)
mtkfrklnrptghrmsmLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAyrykdraggytrllrsrirvgdaapmayie
Low Complexity Region (SEG)
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE
Disordered region (IsUnstruct)
***********************QLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGD********
Disordered Region (DISOPRED)
**KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE
Disordered Region (DISEMBL)
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE
Disordered Region (DISPRO)
************HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
A0L5Z9	126	50S ribosomal protein L17	yes	no	0.963	0.849	0.555	7e-29
B3E858	124	50S ribosomal protein L17	yes	no	0.963	0.862	0.551	2e-27
A0LIL8	151	50S ribosomal protein L17	yes	no	0.963	0.708	0.542	2e-27
A1ALW8	127	50S ribosomal protein L17	yes	no	0.963	0.842	0.551	3e-27
Q250K3	112	50S ribosomal protein L17	yes	no	0.972	0.964	0.546	3e-27
B8G1Z5	112	50S ribosomal protein L17	yes	no	0.972	0.964	0.546	3e-27
C6E4M9	168	50S ribosomal protein L17	yes	no	0.963	0.636	0.523	4e-27
Q749B4	175	50S ribosomal protein L17	yes	no	0.963	0.611	0.532	5e-27
Q39XX8	178	50S ribosomal protein L17	yes	no	0.963	0.601	0.523	8e-27
B0TC86	112	50S ribosomal protein L17	yes	no	0.972	0.964	0.509	2e-26

>sp|A0L5Z9|RL17_MAGSM 50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1) GN=rplQ PE=3 SV=1

 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 83/108 (76%), Gaps = 1/108 (0%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L+R T HR +M++ M+  L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 65  AFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           + + GD +V+HKLFT+LA R KDR GGYTR+L++R R GD APM++IE
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIE 115

Magnetococcus sp. (strain MC-1) (taxid: 156889)

>sp|B3E858|RL17_GEOLS 50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplQ PE=3 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 80/107 (74%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDAA ++ IE
Sbjct: 68  AYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIE 114

Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) (taxid: 398767)

>sp|A0LIL8|RL17_SYNFM 50S ribosomal protein L17 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplQ PE=3 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 76/107 (71%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR T HR++M R MV+ L++HERI TT+ KAKE+RR AD M+ LGK G L A R+  
Sbjct: 8   RKLNRATSHRLAMFRNMVTSLLQHERIFTTLPKAKELRRWADWMISLGKRGDLHARRQVM 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A VR  + + K+F EL  RY+ R GGYTR++++  R GDA+PM  IE
Sbjct: 68  ACVREKETVQKIFAELGPRYQSRPGGYTRIVKAGYRRGDASPMCLIE 114

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|A1ALW8|RL17_PELPD 50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379) GN=rplQ PE=3 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 77/107 (71%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR +M R MV+ L  HE+I TT AKAKE+R +A+ M+ LGK G L + R AA
Sbjct: 8   RRLGRKTSHREAMFRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           AF+R   V+ KLF+ +A RYK+RAGGYTR+++   R GDAAPM+ IE
Sbjct: 68  AFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSIIE 114

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|Q250K3|RL17_DESHY 50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain Y51) GN=rplQ PE=3 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 78/108 (72%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV  +A+ M+ LGK+G L A R A
Sbjct: 3   YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNA 62

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             ++  +DV+ KLFTE+A +Y DR GGYTR+++   R GDAA M  IE
Sbjct: 63  LTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIE 110

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

>sp|B8G1Z5|RL17_DESHD 50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplQ PE=3 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 78/108 (72%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV  +A+ M+ LGK+G L A R A
Sbjct: 3   YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNA 62

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             ++  +DV+ KLFTE+A +Y DR GGYTR+++   R GDAA M  IE
Sbjct: 63  LTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIE 110

Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) (taxid: 272564)

>sp|C6E4M9|RL17_GEOSM 50S ribosomal protein L17 OS=Geobacter sp. (strain M21) GN=rplQ PE=3 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 79/107 (73%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+  ++HE+I TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLQHEKITTTDAKAKELRSIAEKMITLGKRGDLHATRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A++R   V+ KLFTE+A RY +R GGYTR+++  IR GD AP++ +E
Sbjct: 68  AYIRDKKVVTKLFTEIAPRYTERPGGYTRIIKLGIRPGDNAPVSVLE 114

Geobacter sp. (strain M21) (taxid: 443144)

>sp|Q749B4|RL17_GEOSL 50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rplQ PE=3 SV=1

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 78/107 (72%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ IE
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIE 114

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

>sp|Q39XX8|RL17_GEOMG 50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplQ PE=3 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 79/107 (73%)

Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+L R T HR++M R MV+  ++HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAA 67

Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ IE
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDNAPLSVIE 114

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|B0TC86|RL17_HELMI 50S ribosomal protein L17 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplQ PE=3 SV=1

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 78/108 (72%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           +RK +RPT HR ++LR + + L+KH +I TT  KAKE+RR+AD M+ LGK+G L A R+A
Sbjct: 3   YRKFSRPTNHRRALLRNITTSLLKHGKIVTTEPKAKELRRIADKMITLGKQGDLHARRQA 62

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            AF++ + V+  LF E+A +Y  R GGYTR+L++  R GDAAPM  +E
Sbjct: 63  LAFIQEESVVTHLFKEIAPKYATRQGGYTRVLKAGFRRGDAAPMCIVE 110

Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) (taxid: 498761)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
224095978	160	predicted protein [Populus trichocarpa]	1.0	0.693	0.945	8e-57
359807620	159	uncharacterized protein LOC100785280 [Gl	1.0	0.698	0.936	5e-54
351723995	159	uncharacterized protein LOC100305861 [Gl	1.0	0.698	0.936	5e-54
297797483	160	ribosomal protein L17 family protein [Ar	1.0	0.693	0.927	6e-54
297811075	160	ribosomal protein L17 family protein [Ar	1.0	0.693	0.909	3e-53
7671412	156	ribsomal protein-like [Arabidopsis thali	1.0	0.711	0.909	4e-53
18416086	160	Ribosomal protein L17 family protein [Ar	1.0	0.693	0.909	5e-53
225431527	160	PREDICTED: 50S ribosomal protein L17 [Vi	1.0	0.693	0.972	8e-53
357464601	162	50S ribosomal protein L17 [Medicago trun	1.0	0.685	0.891	9e-53
217071296	162	unknown [Medicago truncatula]	1.0	0.685	0.891	1e-52

>gi|224095978|ref|XP_002310514.1| predicted protein [Populus trichocarpa] gi|222853417|gb|EEE90964.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 111/111 (100%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKLNRPTGHRMSMLRTMVSQL+KHERIETTVAKAKE+RRLADNMVQLGKEGSLCA+
Sbjct: 1   MTKFRKLNRPTGHRMSMLRTMVSQLIKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAS 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAAAFVRGDDVIHKLF+ELAYRYKDRAGGYTR+LR+RIRVGDAAPMAYIE
Sbjct: 61  RRAAAFVRGDDVIHKLFSELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIE 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807620|ref|NP_001240907.1| uncharacterized protein LOC100785280 [Glycine max] gi|255640336|gb|ACU20456.1| unknown [Glycine max]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/111 (93%), Positives = 108/111 (97%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGS  AA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQHAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAA+FVRGDDV+HKLFTELAYRYKDRAGGYTRLLR+RIRVGDAAPMAYIE
Sbjct: 61  RRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723995|ref|NP_001237810.1| uncharacterized protein LOC100305861 [Glycine max] gi|255626807|gb|ACU13748.1| unknown [Glycine max]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/111 (93%), Positives = 108/111 (97%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGS  AA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQHAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           R+AA+FVRGDDVIHKLFTELAYRYKDRAGGYTRLLR+RIRVGDAAPMAYIE
Sbjct: 61  RQAASFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797483|ref|XP_002866626.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312461|gb|EFH42885.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (545), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/111 (92%), Positives = 107/111 (96%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSL AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLAAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAA FVRGDDV+HK+FTELAYRYKDRAGGYTR+LR+RIRVGDAAPMAYIE
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIE 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811075|ref|XP_002873421.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319258|gb|EFH49680.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (538), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 106/111 (95%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNMVQLGKEG+L AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMVQLGKEGTLAAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAA FVRGDDV+HK+FTELAYRYKDRAGGYTR+LR+RIRVGDAAPMAYIE
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIE 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7671412|emb|CAB89353.1| ribsomal protein-like [Arabidopsis thaliana]

 Score =  211 bits (537), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 106/111 (95%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTRLLR+RIRVGDAAPMAYIE
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416086|ref|NP_568216.1| Ribosomal protein L17 family protein [Arabidopsis thaliana] gi|21592350|gb|AAM64301.1| ribsomal protein-like [Arabidopsis thaliana] gi|27808520|gb|AAO24540.1| At5g09770 [Arabidopsis thaliana] gi|110736202|dbj|BAF00072.1| ribsomal protein - like [Arabidopsis thaliana] gi|332004061|gb|AED91444.1| Ribosomal protein L17 family protein [Arabidopsis thaliana]

 Score =  211 bits (537), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 106/111 (95%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTRLLR+RIRVGDAAPMAYIE
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431527|ref|XP_002281739.1| PREDICTED: 50S ribosomal protein L17 [Vitis vinifera] gi|296088573|emb|CBI37564.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (535), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 108/111 (97%), Positives = 110/111 (99%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGSLCAA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR+RIRVGDAAPMAYIE
Sbjct: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464601|ref|XP_003602582.1| 50S ribosomal protein L17 [Medicago truncatula] gi|355491630|gb|AES72833.1| 50S ribosomal protein L17 [Medicago truncatula] gi|388522235|gb|AFK49179.1| unknown [Medicago truncatula]

 Score =  210 bits (534), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 107/111 (96%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKLNR T HR+SMLRTMVSQLV+HERIETT+ KAKEVRRLADNMVQLGKEGS+CAA
Sbjct: 1   MTKFRKLNRDTSHRLSMLRTMVSQLVRHERIETTITKAKEVRRLADNMVQLGKEGSVCAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAA+FVRGDDV+HKLFTELAYRYKDR GGYTR+LR+RIRVGDAAPMAYIE
Sbjct: 61  RRAASFVRGDDVLHKLFTELAYRYKDRTGGYTRVLRTRIRVGDAAPMAYIE 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071296|gb|ACJ84008.1| unknown [Medicago truncatula]

 Score =  210 bits (534), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 107/111 (96%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
           MTKFRKLNR T HR+SMLRTMVSQLV+HERIETT+ KAKEVRRLADNMVQLGKEGS+CAA
Sbjct: 1   MTKFRKLNRDTSHRLSMLRTMVSQLVRHERIETTITKAKEVRRLADNMVQLGKEGSVCAA 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           RRAA+FVRGDDV+HKLFTELAYRYKDR GGYTR+LR+RIRVGDAAPMAYIE
Sbjct: 61  RRAASFVRGDDVLHKLFTELAYRYKDRTGGYTRVLRTRIRVGDAAPMAYIE 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:2144821	160	AT5G09770 [Arabidopsis thalian	1.0	0.693	0.909	1.5e-49
TAIR|locus:2174804	160	AT5G64650 [Arabidopsis thalian	1.0	0.693	0.891	5.2e-49
TIGR_CMR|GSU_2830	175	GSU_2830 "ribosomal protein L1	0.963	0.611	0.532	5.2e-26
TIGR_CMR|SO_0257	131	SO_0257 "ribosomal protein L17	0.963	0.816	0.542	1.8e-25
TIGR_CMR|SPO_0512	140	SPO_0512 "ribosomal protein L1	0.972	0.771	0.490	1.8e-23
UNIPROTKB|P0AG44	127	rplQ "50S ribosomal subunit pr	0.963	0.842	0.495	3.8e-23
TIGR_CMR|CPS_0627	134	CPS_0627 "ribosomal protein L1	0.963	0.798	0.514	4.8e-23
TAIR|locus:2080335	211	AT3G54210 [Arabidopsis thalian	0.954	0.502	0.481	1.3e-22
DICTYBASE|DDB_G0281435	182	mrpl17 "ribosomal protein L17,	0.981	0.598	0.486	2.1e-22
UNIPROTKB|Q9KP09	128	rplQ "50S ribosomal protein L1	0.963	0.835	0.495	2.6e-22

TAIR|locus:2144821 AT5G09770 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 101/111 (90%), Positives = 106/111 (95%)

Query:     1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
             MTKFRKL RP GHRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct:     1 MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query:    61 RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTRLLR+RIRVGDAAPMAYIE
Sbjct:    61 RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2174804 AT5G64650 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 99/111 (89%), Positives = 106/111 (95%)

Query:     1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
             MTKFRKL RP GHRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+QLGKEGSL AA
Sbjct:     1 MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query:    61 RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             RRAA FVRGDDV+HK+FTELA+RYKDRAGGYTR+LR+RIRVGDAAPMAYIE
Sbjct:    61 RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIE 111

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|GSU_2830 GSU_2830 "ribosomal protein L17" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 57/107 (53%), Positives = 78/107 (72%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+L R T HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct:     8 RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ IE
Sbjct:    68 SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIE 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SO_0257 SO_0257 "ribosomal protein L17" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 58/107 (54%), Positives = 76/107 (71%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M R M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRQAMFRNMASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             A  R  +V+ KLFTEL  RY++R GGYTR+L+  +R GD APMAYIE
Sbjct:    68 ARTRDAEVVGKLFTELGPRYQERPGGYTRILKCGLRAGDKAPMAYIE 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_0512 SPO_0512 "ribosomal protein L17" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 53/108 (49%), Positives = 74/108 (68%)

Query:     4 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
             +R+LNR   HR ++   M   L++HE+I+TT+ KAKE+R + + ++ LGK G L A R+A
Sbjct:     7 YRRLNRTHEHRKALFANMAGSLIEHEQIKTTLPKAKELRPIVEKLITLGKRGDLHARRQA 66

Query:    64 AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             AA ++ D  + KLF  LA RYKDR GGY R+L++  R GD APMA IE
Sbjct:    67 AAQLKEDKDVAKLFDVLAERYKDRQGGYVRILKAGFRYGDMAPMAIIE 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

UNIPROTKB|P0AG44 rplQ "50S ribosomal subunit protein L17" [Escherichia coli K-12 (taxid:83333)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 53/107 (49%), Positives = 72/107 (67%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE
Sbjct:    68 ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 114

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

TIGR_CMR|CPS_0627 CPS_0627 "ribosomal protein L17" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 55/107 (51%), Positives = 72/107 (67%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M R M S LVKH  I+TTVAKAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRQAMFRNMASSLVKHGVIKTTVAKAKELRRVLEPLITLAKTDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             A  +  +V+  LF EL  RY++R GGYTR+L+   R GD APMAYIE
Sbjct:    68 ARTQDKEVVGILFNELGARYQERPGGYTRILKCGFRTGDKAPMAYIE 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TAIR|locus:2080335 AT3G54210 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 51/106 (48%), Positives = 72/106 (67%)

Query:     6 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAA 65
             KLNRP   R ++LR + +QL+KH RI+TT A+A  +R+  D M+ L K+GSL   R+A  
Sbjct:   104 KLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALG 163

Query:    66 FVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             ++    ++H LF E+  RY +R GGYTR++R+  R GD APMAYIE
Sbjct:   164 YIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 209

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

DICTYBASE|DDB_G0281435 mrpl17 "ribosomal protein L17, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 53/109 (48%), Positives = 74/109 (67%)

Query:     3 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             K  KL R + HRM MLRTMV+QL++HERI+TT+AKAK +R+ AD ++ + K  +  +   
Sbjct:     6 KLAKLGRESHHRMLMLRTMVTQLIRHERIKTTLAKAKALRKEADRIITIAKRNTRLSHSL 65

Query:    63 AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
               ++V    VI KLF EL  R+ DR GGYTR+L++  R+ D + MAYIE
Sbjct:    66 VYSYVTDKQVIPKLFKELRLRFGDRPGGYTRVLKAGSRLSDRSKMAYIE 114

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q9KP09 rplQ "50S ribosomal protein L17" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 53/107 (49%), Positives = 71/107 (66%)

Query:     5 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
             R+LNR + HR +M   M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct:     8 RQLNRNSSHRKAMFSNMASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67

Query:    65 AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             A  R ++V+ KLF EL  R+  R GGYTR+L+   R GD APMAYIE
Sbjct:    68 ARTRDNEVVAKLFNELGPRFAARQGGYTRILKCGFRAGDKAPMAYIE 114

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1KM34	RL17_SHEWM	No assigned EC number	0.5327	0.9639	0.8106	yes	no
A0KRQ0	RL17_SHESA	No assigned EC number	0.5420	0.9639	0.8167	yes	no
Q2S938	RL17_HAHCH	No assigned EC number	0.5046	0.9639	0.8294	yes	no
C6DFS2	RL17_PECCP	No assigned EC number	0.5046	0.9639	0.8230	yes	no
A1REE0	RL17_SHESW	No assigned EC number	0.5420	0.9639	0.8167	yes	no
Q0I079	RL17_SHESR	No assigned EC number	0.5420	0.9639	0.8167	yes	no
Q8RE45	RL17_FUSNN	No assigned EC number	0.4814	0.9729	0.9310	yes	no
Q2RFS7	RL17_MOOTA	No assigned EC number	0.5	0.9729	0.9642	yes	no
Q18CI8	RL17_CLOD6	No assigned EC number	0.5135	1.0	0.9823	yes	no
B8CNF9	RL17_SHEPW	No assigned EC number	0.5140	0.9639	0.8230	yes	no
A1ALW8	RL17_PELPD	No assigned EC number	0.5514	0.9639	0.8425	yes	no
A1W334	RL17_ACISJ	No assigned EC number	0.5	0.9729	0.8372	yes	no
A8G1C4	RL17_SHESH	No assigned EC number	0.5233	0.9639	0.8106	yes	no
B7GJ95	RL17_ANOFW	No assigned EC number	0.5	0.9729	0.9	yes	no
B6IRT1	RL17_RHOCS	No assigned EC number	0.5140	0.9639	0.7697	yes	no
B8G1Z5	RL17_DESHD	No assigned EC number	0.5462	0.9729	0.9642	yes	no
A4YBV7	RL17_SHEPC	No assigned EC number	0.5420	0.9639	0.8167	yes	no
A9KWC7	RL17_SHEB9	No assigned EC number	0.5327	0.9639	0.8167	yes	no
A3Q9A8	RL17_SHELP	No assigned EC number	0.5327	0.9639	0.8230	yes	no
C6E4M9	RL17_GEOSM	No assigned EC number	0.5233	0.9639	0.6369	yes	no
Q1H4L1	RL17_METFK	No assigned EC number	0.5046	0.9639	0.8167	yes	no
Q0AUL0	RL17_SYNWW	No assigned EC number	0.4907	0.9729	0.9557	yes	no
A3DA46	RL17_SHEB5	No assigned EC number	0.5327	0.9639	0.8167	yes	no
Q6AP42	RL17_DESPS	No assigned EC number	0.5233	0.9639	0.8294	yes	no
B3E858	RL17_GEOLS	No assigned EC number	0.5514	0.9639	0.8629	yes	no
C4L7V6	RL17_TOLAT	No assigned EC number	0.5233	0.9639	0.8359	yes	no
A8GZ01	RL17_SHEPA	No assigned EC number	0.5140	0.9639	0.8230	yes	no
A6WHV4	RL17_SHEB8	No assigned EC number	0.5327	0.9639	0.8167	yes	no
Q250K3	RL17_DESHY	No assigned EC number	0.5462	0.9729	0.9642	yes	no
Q8ETV8	RL17_OCEIH	No assigned EC number	0.5309	0.9639	0.9145	yes	no
B0TC86	RL17_HELMI	No assigned EC number	0.5092	0.9729	0.9642	yes	no
B0TLY7	RL17_SHEHH	No assigned EC number	0.5233	0.9639	0.8230	yes	no
Q8R7Y3	RL17_THETN	No assigned EC number	0.5	0.9729	0.9642	yes	no
Q9S0Q7	RL17_SHEVD	No assigned EC number	0.5327	0.9639	0.8167	yes	no
Q2RQY5	RL17_RHORT	No assigned EC number	0.5233	0.9639	0.7642	yes	no
Q6CZZ6	RL17_ERWCT	No assigned EC number	0.5046	0.9639	0.8230	yes	no
B9MBW3	RL17_ACIET	No assigned EC number	0.5	0.9729	0.8372	yes	no
A0L5Z9	RL17_MAGSM	No assigned EC number	0.5555	0.9639	0.8492	yes	no
B8EBH9	RL17_SHEB2	No assigned EC number	0.5327	0.9639	0.8167	yes	no
Q749B4	RL17_GEOSL	No assigned EC number	0.5327	0.9639	0.6114	yes	no
A1S244	RL17_SHEAM	No assigned EC number	0.5140	0.9639	0.8167	yes	no
Q089M8	RL17_SHEFN	No assigned EC number	0.5140	0.9639	0.8167	yes	no
Q0HNR1	RL17_SHESM	No assigned EC number	0.5420	0.9639	0.8167	yes	no
Q8EK46	RL17_SHEON	No assigned EC number	0.5420	0.9639	0.8167	yes	no
A0LIL8	RL17_SYNFM	No assigned EC number	0.5420	0.9639	0.7086	yes	no
C0Q9U6	RL17_DESAH	No assigned EC number	0.5188	0.9549	0.8833	yes	no
Q39XX8	RL17_GEOMG	No assigned EC number	0.5233	0.9639	0.6011	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_VII0132	hypothetical protein (160 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IV.3048.1	SubName- Full=Putative uncharacterized protein; (227 aa)	•			•			•		0.893
	gw1.16155.2.1	Predicted protein (206 aa)	•			•			•		0.886
	eugene3.00141000	hypothetical protein (227 aa)	•			•	•		•		0.875
	rpl22	50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)	•			•	•		•		0.855
	gw1.XIX.1275.1	annotation not avaliable (106 aa)	•			•			•		0.840
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•			•		0.840
	estExt_fgenesh4_pm.C_LG_IV0116	hypothetical protein (160 aa)	•			•	•		•		0.832
	estExt_Genewise1_v1.C_LG_X3691	SubName- Full=Putative uncharacterized protein; (165 aa)	•		•	•	•		•		0.806
	gw1.II.2942.1	SubName- Full=Putative uncharacterized protein; (218 aa)	•			•	•		•		0.801
	estExt_fgenesh4_pg.C_13160002	hypothetical protein (165 aa)	•		•	•	•		•		0.798

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
PRK05591	113	PRK05591, rplQ, 50S ribosomal protein L17; Validat	1e-51
COG0203	116	COG0203, RplQ, Ribosomal protein L17 [Translation,	1e-44
pfam01196	97	pfam01196, Ribosomal_L17, Ribosomal protein L17	9e-44
TIGR00059	112	TIGR00059, L17, ribosomal protein L17	1e-36
PTZ00076	253	PTZ00076, PTZ00076, 60S ribosomal protein L17; Pro	1e-15

>gnl|CDD|235522 PRK05591, rplQ, 50S ribosomal protein L17; Validated

 Score =  157 bits (401), Expect = 1e-51
 Identities = 58/111 (52%), Positives = 78/111 (70%)

Query: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA 60
             K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L A 
Sbjct: 1   RKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHAR 60

Query: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           R+A A +R  + +HKLF E+A RY DR GGYTR+L+   R GD APMA IE
Sbjct: 61  RQAFARLRDKEAVHKLFDEIAPRYADRNGGYTRILKLGFRRGDNAPMAIIE 111

Length = 113

>gnl|CDD|223281 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

 Score =  140 bits (355), Expect = 1e-44
 Identities = 56/110 (50%), Positives = 75/110 (68%)

Query: 2   TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
            K RKL R + HR +MLR + + L++HERIETT+ KAKE+RR+ + ++ L K+G L   R
Sbjct: 5   KKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRR 64

Query: 62  RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            A A +R  D + KLF E+A RY +R GGYTR+L+   R GD APMA IE
Sbjct: 65  LAFARLRDKDAVKKLFDEIAPRYAERNGGYTRILKLGFRRGDNAPMAIIE 114

Length = 116

>gnl|CDD|216356 pfam01196, Ribosomal_L17, Ribosomal protein L17

 Score =  137 bits (347), Expect = 9e-44
 Identities = 50/95 (52%), Positives = 70/95 (73%)

Query: 17  MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKL 76
           +LR + + L++HERIETT+AKAKE+R  A+ ++ L K+G L A R+A +F+R  +++ KL
Sbjct: 1   LLRNLATSLIRHERIETTLAKAKELRPYAEKLITLAKKGDLHARRQALSFLRDKELVKKL 60

Query: 77  FTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           F ELA RY DR GGYTR+++   R GD APMA IE
Sbjct: 61  FDELAPRYADRNGGYTRIIKLGPRRGDNAPMAIIE 95

Length = 97

>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17

 Score =  119 bits (301), Expect = 1e-36
 Identities = 52/108 (48%), Positives = 77/108 (71%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           +RKL R + HR ++LR + S L++HE+I+TT+AKAKE+RR+ + ++ L K  +    R A
Sbjct: 2   YRKLGRTSAHRKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREA 61

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            A++R  +++HKLF+E+A RY  R GGYTR+L+   R GDAA MA IE
Sbjct: 62  KAYIRNKEIVHKLFSEIAPRYAQRPGGYTRILKLGPRRGDAAEMAIIE 109

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 112

>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRA 63
           FR+ +    HR   ++  + +L+++ R+E T+ +AKE+++ A+ ++ L K+ +  +  + 
Sbjct: 19  FRRAHGQPHHRWDSIKNQLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKV 78

Query: 64  AAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIE 111
            + +R      KL+ +    Y+DR   +TR++   R+R+ DAAPMAYIE
Sbjct: 79  ESMLRTPQGRRKLYEKYVPLYRDRPFFFTRVVNQWRLRLRDAAPMAYIE 127

Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
PRK05591	113	rplQ 50S ribosomal protein L17; Validated	100.0
COG0203	116	RplQ Ribosomal protein L17 [Translation, ribosomal	100.0
TIGR00059	112	L17 ribosomal protein L17. Eubacterial and mitocho	100.0
PTZ00076	253	60S ribosomal protein L17; Provisional	100.0
PF01196	97	Ribosomal_L17: Ribosomal protein L17; InterPro: IP	100.0
KOG3280	171	consensus Mitochondrial/chloroplast ribosomal prot	100.0

>PRK05591 rplQ 50S ribosomal protein L17; Validated

Probab=100.00  E-value=1.4e-57  Score=322.53  Aligned_cols=111  Identities=52%  Similarity=0.826  Sum_probs=109.5

Q ss_pred             CCcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHH
Q 033801            1 MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL   80 (111)
Q Consensus         1 ~~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l   80 (111)
                      +.+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|++|++.+||.|+++++|||++|
T Consensus         1 ~~~~rkl~r~~~hR~allrnl~tsLi~herI~TT~~KAKelr~~aEklIt~aK~~~~~~rR~~~~~L~~~~~v~KLf~~l   80 (113)
T PRK05591          1 RKKGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHARRQAFARLRDKEAVHKLFDEI   80 (113)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHHcCeEEecHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhCCHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           81 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        81 ~pRy~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      +|||+||+||||||+|+++|.||+|||||||
T Consensus        81 apry~~R~GGYTRI~k~~~R~gD~A~ma~iE  111 (113)
T PRK05591         81 APRYADRNGGYTRILKLGFRRGDNAPMAIIE  111 (113)
T ss_pred             HHHhCcCCCCeEEEEECCCCCCCCCCeEEEE
Confidence            9999999999999999999999999999998

>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-57  Score=321.27  Aligned_cols=109  Identities=51%  Similarity=0.815  Sum_probs=108.0

Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHHH
Q 033801            3 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY   82 (111)
Q Consensus         3 ~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~p   82 (111)
                      ++++|||+++||++||+||++|||+||+|+||++||||+|+++|+|||+||.||++++|+|.++|.|++++.|||++|+|
T Consensus         6 ~~rkl~rtsshR~amlrnla~sLi~he~I~TT~~KAKelr~~vEkLITlaK~~~l~~RR~a~~~l~d~~~v~kLF~~iap   85 (116)
T COG0203           6 KGRKLGRTSSHRKAMLRNLATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRRLAFARLRDKDAVKKLFDEIAP   85 (116)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHcCceeecHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHcccHHHHHHHHHHhCh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           83 RYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        83 Ry~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      ||.+||||||||+|+|+|.||+|||||||
T Consensus        86 ry~~R~GGYtRIlK~g~R~GD~A~maiiE  114 (116)
T COG0203          86 RYAERNGGYTRILKLGFRRGDNAPMAIIE  114 (116)
T ss_pred             hhcCCCCCeeEEEecCCCCCCCCceEEEE
Confidence            99999999999999999999999999998

>TIGR00059 L17 ribosomal protein L17

Probab=100.00  E-value=5.1e-57  Score=319.23  Aligned_cols=109  Identities=48%  Similarity=0.827  Sum_probs=107.6

Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHHH
Q 033801            3 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY   82 (111)
Q Consensus         3 ~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~p   82 (111)
                      +++||||+++||++|||||++|||+||+|+||++||||+|+|||+|||+||+||+|++|++.+||.|+++++|||++|+|
T Consensus         1 ~~~klgr~~~hR~allrnl~tsLi~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rR~~~~~l~~~~~v~KLf~~lap   80 (112)
T TIGR00059         1 SYRKLGRTSAHRKALLRNLASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREAKAYIRNKEIVHKLFSEIAP   80 (112)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCeEEECHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           83 RYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        83 Ry~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      ||++||||||||+|+++|.||+|||||||
T Consensus        81 ry~~R~GGYTRI~kl~~R~gD~A~maiiE  109 (112)
T TIGR00059        81 RYAQRPGGYTRILKLGPRRGDAAEMAIIE  109 (112)
T ss_pred             HhCCCCCCeEEEEECCCCCCCCCCeEEEE
Confidence            99999999999999999999999999998

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model.

>PTZ00076 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=1.6e-50  Score=316.36  Aligned_cols=109  Identities=30%  Similarity=0.523  Sum_probs=107.1

Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHHH
Q 033801            3 KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY   82 (111)
Q Consensus         3 ~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~p   82 (111)
                      +++||||+++||++|||||++|||+||||+||++||||+|+|||+|||+||++++|++|++.++|.|+++++|||++|+|
T Consensus        18 ~~rKLgR~ssHR~AlLRNLvtsLI~hERIeTTlaKAKELR~~AEKLITlAKk~tl~sRR~a~s~L~d~~av~KLF~eLAP   97 (253)
T PTZ00076         18 LFRRAHGQPHHRWDSIKNQLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKVESMLRTPQGRRKLYEKYVP   97 (253)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHcCcEEecHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCeeEEEcc-cCCCCCCCcccccC
Q 033801           83 RYKDRAGGYTRLLRS-RIRVGDAAPMAYIE  111 (111)
Q Consensus        83 Ry~~r~GGYTRi~kl-~~R~GD~A~maiiE  111 (111)
                      ||++|+||||||+|+ ++|.||+|||||||
T Consensus        98 RY~dR~GGYTRIlK~~g~R~GD~ApMAiIE  127 (253)
T PTZ00076         98 LYRDRPFFFTRVVNQWRLRLRDAAPMAYIE  127 (253)
T ss_pred             HhcCCCCCeeEEEeCCCCCCCCCCCEEEEE
Confidence            999999999999997 69999999999998

>PF01196 Ribosomal_L17: Ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.3e-50  Score=278.11  Aligned_cols=95  Identities=54%  Similarity=0.881  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHHHhhccCCCCeeEEEc
Q 033801           17 MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR   96 (111)
Q Consensus        17 llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~pRy~~r~GGYTRi~k   96 (111)
                      |||||+|+||+||+|+||++||||+|+|||+|||+||+|++|+++++.+||.|+++++|||++|+|||++|+||||||+|
T Consensus         1 llrnlvt~Li~herI~TT~~KAke~r~~aErlIt~ak~~~~~~~r~~~~~l~~~~~v~KLf~~l~pRy~~r~GgYTRi~k   80 (97)
T PF01196_consen    1 LLRNLVTSLIRHERIETTLAKAKELRPYAERLITLAKKGDLHARRQALSWLRDKELVKKLFKELAPRYADRNGGYTRIIK   80 (97)
T ss_dssp             HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHCSSSHHHHHHHHTTHHHHTTTSSS-SEEEEE
T ss_pred             ChHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcccccC
Q 033801           97 SRIRVGDAAPMAYIE  111 (111)
Q Consensus        97 l~~R~GD~A~maiiE  111 (111)
                      +++|.||+|||||||
T Consensus        81 l~~R~gD~A~maiiE   95 (97)
T PF01196_consen   81 LGPRRGDAAPMAIIE   95 (97)
T ss_dssp             EEECSSSTCEEEEEE
T ss_pred             CCCCCCCCCCEEEEE
Confidence            999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. Bacterial L17 is a protein of 120 to 130 amino-acid residues while yeast YmL8 is twice as large (238 residues). The N-terminal half of YmL8 is colinear with the sequence of L17 from Escherichia coli.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3F1F_R 1VSP_L 3PYV_N 3PYR_N 3PYO_N 1VSA_L 3MS1_N 3F1H_R 3D5B_R 3MRZ_N ....

>KOG3280 consensus Mitochondrial/chloroplast ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.7e-47  Score=282.12  Aligned_cols=106  Identities=61%  Similarity=0.933  Sum_probs=104.4

Q ss_pred             CCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhh-ccCChhHH--HHHHhhcCChhHHHHHHHHHHH
Q 033801            6 KLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLG-KEGSLCAA--RRAAAFVRGDDVIHKLFTELAY   82 (111)
Q Consensus         6 klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~A-K~~~~~~~--r~a~~~L~~~~~v~KLf~~l~p   82 (111)
                      |+||+++||.++||||||+|++||||+|||+||||+|+|||+|||+| |.|++|++  +++.+||..+++++|||++|+|
T Consensus        16 Klgr~~~~R~~lLR~lvt~LvkHErIe~t~ara~Ear~~aEklIt~~~k~g~~~~~~~~~a~~~l~ekdli~KlF~vl~p   95 (171)
T KOG3280|consen   16 KLGRPPAHRLALLRNLVTQLVKHERIETTWARAKEARRYAEKLITLGKKAGSLHERTARMADGWLREKDLLHKLFTVLAP   95 (171)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCcHhHHHHHHHhcccccchHHHHHHHHhch
Confidence            99999999999999999999999999999999999999999999999 78999988  9999999999999999999999


Q ss_pred             hhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           83 RYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        83 Ry~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      ||+||+|||||+++++||.||+|||||||
T Consensus        96 RY~dr~ggYTRllrlppr~~d~apmavlE  124 (171)
T KOG3280|consen   96 RYKDRNGGYTRLLRLPPRRGDRAPMAVLE  124 (171)
T ss_pred             hhccCCCCceehhccCcccccccCceeee
Confidence            99999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
3bbo_P	205	Homology Model For The Spinach Chloroplast 50s Subu		2e-25
1p85_L	127	Real Space Refined Coordinates Of The 50s Subunit F		4e-25
2gya_L	114	Structure Of The 50s Subunit Of A Pre-Translocation		4e-25
3fik_N	120	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		4e-25
3fin_R	117	T. Thermophilus 70s Ribosome In Complex With Mrna,		4e-20
1gd8_A	118	The Crystal Structure Of Bacteria-Specific L17 Ribo		4e-20
1nkw_L	116	Crystal Structure Of The Large Ribosomal Subunit Fr		9e-17
1pnu_L	114	Crystal Structure Of A Streptomycin Dependent Ribos		9e-17
2ftc_J	116	Structural Model For The Large Subunit Of The Mamma		2e-15
2cqm_A	122	Solution Structure Of The Mitochondrial Ribosomal P		3e-14

>pdb|3BBO|P Chain P, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 205

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 74/109 (67%)
Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
           K  KLNRP   R ++LR + +QL+KH RI+TT A+A+ VR+  D M+ + K+GSL   R+
Sbjct: 95  KVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQ 154
Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A  F+    ++H LF E+  RY +R GGYTR++R+  R GD APMAYIE
Sbjct: 155 ALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203

>pdb|1P85|L Chain L, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 127

Iteration: 1
 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 72/107 (67%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct: 8   RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE
Sbjct: 68  ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 114

>pdb|2GYA|L Chain L, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 114

Iteration: 1
 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 72/107 (67%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct: 6   RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 65
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE
Sbjct: 66  ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 112

>pdb|3FIK|N Chain N, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 120

Iteration: 1
 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 72/107 (67%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A 
Sbjct: 8   RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAF 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE
Sbjct: 68  ARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 114

>pdb|3FIN|R Chain R, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R   
Sbjct: 7   RKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVL 66
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIE 111
             ++   ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A +E
Sbjct: 67  RDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE 114

>pdb|1GD8|A Chain A, The Crystal Structure Of Bacteria-Specific L17 Ribosomal Protein. Length = 118

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R   
Sbjct: 8   RKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVL 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIE 111
             ++   ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A +E
Sbjct: 68  RDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE 115

>pdb|1NKW|L Chain L, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 116

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 64/107 (59%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R  A
Sbjct: 8   RKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVA 67
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 68  QDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 114

>pdb|1PNU|L Chain L, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 114

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 64/107 (59%)
Query: 5   RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAA 64
           RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R  A
Sbjct: 6   RKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVA 65
Query: 65  AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 66  QDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 112

>pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 116

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 4   FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AAR 61
           FR++      R+ +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G     A R
Sbjct: 5   FRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMR 64
Query: 62  RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            A  ++   D+I KLF  LA RYKD+ GGYTR+L+   R  D A MA IE
Sbjct: 65  MADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 114

>pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein L17 Isolog Length = 122

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 16  SMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVI 73
            +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G     A R A  ++   D+I
Sbjct: 7   GLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLI 66
Query: 74  HKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            KLF  LA RYKD+ GGYTR+L+   R  D A MA IE
Sbjct: 67  PKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 104
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
3r8s_N	120	50S ribosomal protein L17; protein biosynthesis, R	2e-51
2zjr_K	116	50S ribosomal protein L17; ribosome, large ribosom	3e-48
3bbo_P	205	Ribosomal protein L17; large ribosomal subunit, sp	3e-48
1gd8_A	118	50S ribosomal protein L17; two domains, ribosomal	4e-47
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	1e-45

>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N ... Length = 120

 Score =  156 bits (398), Expect = 2e-51
 Identities = 53/109 (48%), Positives = 72/109 (66%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R 
Sbjct: 6   SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE
Sbjct: 66  AFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 114

>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O Length = 116

 Score =  148 bits (377), Expect = 3e-48
 Identities = 43/109 (39%), Positives = 64/109 (58%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R 
Sbjct: 6   AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            A  +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 66  VAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 114

>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 205

 Score =  151 bits (384), Expect = 3e-48
 Identities = 53/110 (48%), Positives = 74/110 (67%)

Query: 2   TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAAR 61
            K  KLNRP   R ++LR + +QL+KH RI+TT A+A+ VR+  D M+ + K+GSL   R
Sbjct: 94  RKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRR 153

Query: 62  RAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           +A  F+    ++H LF E+  RY +R GGYTR++R+  R GD APMAYIE
Sbjct: 154 QALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203

>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... Length = 118

 Score =  146 bits (370), Expect = 4e-47
 Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 1/110 (0%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R 
Sbjct: 6   SGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIE 111
               ++   ++ KLF E+A RY+DR GGYTR+L+    R GD AP+A +E
Sbjct: 66  VLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE 115

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Length = 122

 Score =  142 bits (360), Expect = 1e-45
 Identities = 42/103 (40%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 11  TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCA--ARRAAAFVR 68
           +     +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++ 
Sbjct: 2   SSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLT 61

Query: 69  GDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
             D+I KLF  LA RYKD+ GGYTR+L+   R  D A MA IE
Sbjct: 62  EKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2zjr_K	116	50S ribosomal protein L17; ribosome, large ribosom	100.0
3r8s_N	120	50S ribosomal protein L17; protein biosynthesis, R	100.0
1gd8_A	118	50S ribosomal protein L17; two domains, ribosomal	100.0
3bbo_P	205	Ribosomal protein L17; large ribosomal subunit, sp	100.0
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	100.0

>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O

Probab=100.00  E-value=7.3e-59  Score=329.29  Aligned_cols=110  Identities=39%  Similarity=0.633  Sum_probs=108.3

Q ss_pred             CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (111)
Q Consensus         2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~   81 (111)
                      .+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||.|+++|+|||++|+
T Consensus         5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~ia   84 (116)
T 2zjr_K            5 KAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVA   84 (116)
T ss_dssp             CCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      |||+|||||||||+|+++|.||+|||||||
T Consensus        85 pry~~R~GGYTRI~K~~~R~GD~A~maiiE  114 (116)
T 2zjr_K           85 PKYAERPGGYTRILRVGTRRGDGVTMALIE  114 (116)
T ss_dssp             HHTTTSCSCCCEEEECCCCTTTCCCEEEEE
T ss_pred             HHhCCCCCCeeEEEECCCCCCCCCceEEEE
Confidence            999999999999999999999999999998

>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...

Probab=100.00  E-value=1.6e-58  Score=329.20  Aligned_cols=110  Identities=48%  Similarity=0.774  Sum_probs=108.4

Q ss_pred             CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (111)
Q Consensus         2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~   81 (111)
                      .+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||.|+++|+|||++|+
T Consensus         5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~ela   84 (120)
T 3r8s_N            5 KSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELG   84 (120)
T ss_dssp             CCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      |||+|||||||||+|+++|.||+|||||||
T Consensus        85 pry~~R~GGYTRI~K~~~R~GD~A~maiiE  114 (120)
T 3r8s_N           85 PRFASRAGGYTRILKCGFRAGDNAPMAYIE  114 (120)
T ss_dssp             HHTTTCCSCCEEEEEEEECTTTCCEEEEEE
T ss_pred             HHhcCCCCCeEEEEECCCCCCCCcCeEEEE
Confidence            999999999999999999999999999998

>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...

Probab=100.00  E-value=1.7e-58  Score=328.28  Aligned_cols=110  Identities=45%  Similarity=0.710  Sum_probs=100.6

Q ss_pred             CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (111)
Q Consensus         2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~   81 (111)
                      .+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||.|+++|+|||++|+
T Consensus         5 ~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~ia   84 (118)
T 1gd8_A            5 KSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIA   84 (118)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeeEEEccc-CCCCCCCcccccC
Q 033801           82 YRYKDRAGGYTRLLRSR-IRVGDAAPMAYIE  111 (111)
Q Consensus        82 pRy~~r~GGYTRi~kl~-~R~GD~A~maiiE  111 (111)
                      |||+|||||||||+|++ +|.||+|||||||
T Consensus        85 pry~~R~GGYTRI~K~~~~R~GD~A~maiiE  115 (118)
T 1gd8_A           85 PRYRDRQGGYTRVLKLAERRRGDGAPLALVE  115 (118)
T ss_dssp             HHTSSCCSCCEEEEEEEEECTTTCCEEEEEE
T ss_pred             HHhCCCCCCeEEEEECCCCCCCCCCCeEEEE
Confidence            99999999999999999 9999999999998

>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2

Probab=100.00  E-value=2.5e-55  Score=334.31  Aligned_cols=110  Identities=48%  Similarity=0.824  Sum_probs=108.2

Q ss_pred             CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (111)
Q Consensus         2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~   81 (111)
                      .+++||||+++||++|||||+++||+||+|+||++||||+|+|||+|||+||+||+|++|+|.+||+|+++|+|||++|+
T Consensus        94 ~~~rKLgRtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eia  173 (205)
T 3bbo_P           94 RKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVP  173 (205)
T ss_dssp             CCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSG
T ss_pred             cCCCCCCCChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      |||+||+||||||+|+++|.||+|||||||
T Consensus       174 PRY~dR~GGYTRIlKlg~R~GD~ApMAiIE  203 (205)
T 3bbo_P          174 DRYGERNGGYTRIIRTLPRRGDNAPMAYIE  203 (205)
T ss_dssp             GGGSSCCSCCEECCBCSCCSSSCCCCEEEE
T ss_pred             HHhCCCCCCeeEEEECCCCCCCCcceEEEE
Confidence            999999999999999999999999999998

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S

Probab=100.00  E-value=1.3e-53  Score=304.57  Aligned_cols=102  Identities=42%  Similarity=0.620  Sum_probs=99.5

Q ss_pred             CchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChh--HHHHHHhhcCChhHHHHHHHHHHHhhccC
Q 033801           10 PTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVIHKLFTELAYRYKDR   87 (111)
Q Consensus        10 ~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~--~~r~a~~~L~~~~~v~KLf~~l~pRy~~r   87 (111)
                      .|+||++|||||+||||+||+|+||++||||+|+|||+|||+||+||+|  ++|+|.+||.|+++|+|||++|+|||++|
T Consensus         1 g~~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R   80 (122)
T 2cqm_A            1 GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQ   80 (122)
T ss_dssp             CCCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999999999999999999999999998  56999999999999999999999999999


Q ss_pred             CCCeeEEEcccCCCCCCCcccccC
Q 033801           88 AGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        88 ~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      +||||||+|+++|.||+|||||||
T Consensus        81 ~GGYTRI~K~~~R~GD~A~maiIE  104 (122)
T 2cqm_A           81 TGGYTRMLQIPNRSLDRAKMAVIE  104 (122)
T ss_dssp             CSCCEEEEEECCCSSSCCCEEEEE
T ss_pred             CCCeeEEEECCCCCCCCCCeEEEE
Confidence            999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d2zjrk1	113	d.188.1.1 (K:3-115) Prokaryotic ribosomal protein	3e-36
d2qamn1	120	d.188.1.1 (N:1-120) Prokaryotic ribosomal protein	4e-36
d1gd8a_	105	d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {	4e-30
d2cqma1	109	d.188.1.1 (A:28-136) Prokaryotic ribosomal protein	8e-30

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  117 bits (294), Expect = 3e-36
 Identities = 43/109 (39%), Positives = 64/109 (58%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R 
Sbjct: 4   AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL 63

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            A  +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 64  VAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 112

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

 Score =  117 bits (294), Expect = 4e-36
 Identities = 53/109 (48%), Positives = 72/109 (66%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R 
Sbjct: 6   SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE
Sbjct: 66  AFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIE 114

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} Length = 105

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

 Score =  101 bits (253), Expect = 4e-30
 Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 11  TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD 70
           + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R     ++  
Sbjct: 1   SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDV 60

Query: 71  DVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIE 111
            ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A +E
Sbjct: 61  KLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVE 102

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 8e-30
 Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 17  MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIH 74
           +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I 
Sbjct: 1   LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIP 60

Query: 75  KLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
           KLF  LA RYKD+ GGYTR+L+   R  D A MA IE
Sbjct: 61  KLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2zjrk1	113	Prokaryotic ribosomal protein L17 {Deinococcus rad	100.0
d2qamn1	120	Prokaryotic ribosomal protein L17 {Escherichia col	100.0
d1gd8a_	105	Prokaryotic ribosomal protein L17 {Thermus thermop	100.0
d2cqma1	109	Prokaryotic ribosomal protein L17 {Human (Homo sap	100.0

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.8e-57  Score=318.25  Aligned_cols=110  Identities=39%  Similarity=0.633  Sum_probs=108.4

Q ss_pred             CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (111)
Q Consensus         2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~   81 (111)
                      .+++||||+++||++|||||++|||+||+|+||++||||+|+|||+|||+||+||+|+++++.+||.|+++|+|||++|+
T Consensus         3 ~~~rklgr~~~hR~allrnl~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~ia   82 (113)
T d2zjrk1           3 KAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVA   82 (113)
T ss_dssp             CCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHHHh
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      |||+|||||||||+|+++|.||+|||||||
T Consensus        83 pry~~R~GGYTRI~kl~~R~gD~A~ma~iE  112 (113)
T d2zjrk1          83 PKYAERPGGYTRILRVGTRRGDGVTMALIE  112 (113)
T ss_dssp             HHTTTSCSCCCEEEECCCCTTTCCCEEEEE
T ss_pred             HHhcCCCCCeEEEEECCCCCCCCCceEEEe
Confidence            999999999999999999999999999998

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-56  Score=316.47  Aligned_cols=110  Identities=48%  Similarity=0.774  Sum_probs=108.3

Q ss_pred             CcCCCCCCCchHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHH
Q 033801            2 TKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA   81 (111)
Q Consensus         2 ~~~~klgr~~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~   81 (111)
                      .+++||||+++||++|||||+||||+||+|+||++||||+|+|||+|||+||+|++|++|++.+||.|+++|+|||++|+
T Consensus         5 ~~~rklgr~~~hR~allrnl~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf~~ia   84 (120)
T d2qamn1           5 KSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELG   84 (120)
T ss_dssp             CCCCCTTSCTTGGGTTTHHHHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTTTTHH
T ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHcCCeEecHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccCHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCeeEEEcccCCCCCCCcccccC
Q 033801           82 YRYKDRAGGYTRLLRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        82 pRy~~r~GGYTRi~kl~~R~GD~A~maiiE  111 (111)
                      |||++||||||||+|+|+|.||+|||||||
T Consensus        85 pry~~R~GGYTRI~klg~R~GD~A~maiiE  114 (120)
T d2qamn1          85 PRFASRAGGYTRILKCGFRAGDNAPMAYIE  114 (120)
T ss_dssp             HHTTTCCSCCEECCCCCCCSSSCCCBCCEE
T ss_pred             hHhcCCCCCeeeeeecCCCCCCCCCEEEEE
Confidence            999999999999999999999999999998

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-53  Score=295.76  Aligned_cols=101  Identities=44%  Similarity=0.726  Sum_probs=99.3

Q ss_pred             chHHHHHHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHHHHHHhhcCChhHHHHHHHHHHHhhccCCCC
Q 033801           11 TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGG   90 (111)
Q Consensus        11 ~~hR~~llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~r~a~~~L~~~~~v~KLf~~l~pRy~~r~GG   90 (111)
                      +|||++|||||++|||+||+|+||++||||+|+|||+|||+||+||+|++|++.++|.|+++++|||++|+|||+||+||
T Consensus         1 sshR~allrnl~t~Li~~erI~TT~~KAKelr~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~KLf~~lapry~~R~GG   80 (105)
T d1gd8a_           1 SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGG   80 (105)
T ss_dssp             CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSC
T ss_pred             ChHHHHHHHHHHHHHHHcCEEEEcHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEccc-CCCCCCCcccccC
Q 033801           91 YTRLLRSR-IRVGDAAPMAYIE  111 (111)
Q Consensus        91 YTRi~kl~-~R~GD~A~maiiE  111 (111)
                      ||||+|++ +|.||+|||||||
T Consensus        81 YTRI~kl~~~R~GD~A~ma~iE  102 (105)
T d1gd8a_          81 YTRVLKLAERRRGDGAPLALVE  102 (105)
T ss_dssp             CEEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEecCCCCCCCCCCEEEEE
Confidence            99999997 4999999999998

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-49  Score=275.90  Aligned_cols=95  Identities=44%  Similarity=0.665  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhcccceecHHhHHHHhhhHHHHHHhhccCChhHH--HHHHhhcCChhHHHHHHHHHHHhhccCCCCeeEE
Q 033801           17 MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRL   94 (111)
Q Consensus        17 llrnl~t~Li~herI~TT~~KAKelr~~aEklIt~AK~~~~~~~--r~a~~~L~~~~~v~KLf~~l~pRy~~r~GGYTRi   94 (111)
                      |||||++|||+||+|+||++||||+|+|||+|||+||+||+|++  +++.+|+.|+++++|||++|+|||+||+||||||
T Consensus         1 llrnl~tsLi~herI~TT~~KAKelr~~~ErLIt~aK~~~~~~r~~~~~~~~l~~k~~v~KLf~~lapry~~R~GGYTRI   80 (109)
T d2cqma1           1 LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRM   80 (109)
T ss_dssp             HHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSCSCCEEE
T ss_pred             ChHHHHHHHHHcCeEEecHHHHHHHHHhHHHHHHHhhcCchhHHHHHHhhhhcccHHHHHHHHHHHhHHHhcCCCCeEEE
Confidence            79999999999999999999999999999999999999999987  8888999999999999999999999999999999


Q ss_pred             EcccCCCCCCCcccccC
Q 033801           95 LRSRIRVGDAAPMAYIE  111 (111)
Q Consensus        95 ~kl~~R~GD~A~maiiE  111 (111)
                      +|+++|.||+|||||||
T Consensus        81 ~kl~~R~gD~A~ma~iE   97 (109)
T d2cqma1          81 LQIPNRSLDRAKMAVIE   97 (109)
T ss_dssp             EEECCCSSSCCCEEEEE
T ss_pred             EecCCCCCCCCCeEEEE
Confidence            99999999999999998