Citrus Sinensis ID: 033824

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLqqlqdesnpDFVAEVVSLFFADSERLLNDLTRaldqptidfkmvdshvhqlkgssssigaERIKNACVAFRNFCEEQNIEG
Flexible Loop (DISEMBL)
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLkgssssigaeRIKNACVAFRNFCEEQNIEG
Low Complexity Region (SEG)
MEVGQMQRRLLEYTKSLFMEGVLDNqflqlqqlqDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG
Disordered region (IsUnstruct)
*********LLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ*******IGAERIKNACVAFRNFC*******
Disordered Region (DISOPRED)
********RLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAF***********
Disordered Region (DISEMBL)
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG
Disordered Region (DISPRO)
*EVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9ZNV9	154	Histidine-containing phos	yes	no	1.0	0.720	0.711	3e-37
Q9SAZ5	155	Histidine-containing phos	no	no	0.981	0.703	0.563	3e-32
Q8L9T7	157	Histidine-containing phos	no	no	0.981	0.694	0.572	1e-31
Q9ZNV8	156	Histidine-containing phos	no	no	0.981	0.698	0.527	8e-30
Q9LU15	127	Histidine-containing phos	no	no	0.837	0.732	0.505	5e-25
Q6VAK4	149	Histidine-containing phos	no	no	1.0	0.744	0.446	1e-24
Q9SSC9	154	Histidine-containing phos	no	no	0.864	0.623	0.525	1e-11
O94321	295	Multistep phosphorelay re	yes	no	0.747	0.281	0.294	0.0008

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 99/111 (89%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           M++ Q Q+ L +YTKSLF+EG+LD+QFLQLQQLQDESNPDFV++VV+LFF DS+R+LNDL
Sbjct: 1   MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           + +LDQ  +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E 
Sbjct: 61  SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 111

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 86/110 (78%), Gaps = 1/110 (0%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
           + Q+QRR  ++T SL+ +G LD+QF +L++LQDE +PDFVAEVV+LFF D E+L++++ R
Sbjct: 5   IAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMAR 64

Query: 63  ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           ALDQ   +DFK+V S VHQLKGSSSS+GA+R+K  CV  +  C+ QN EG
Sbjct: 65  ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 85/110 (77%), Gaps = 1/110 (0%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
           V Q+QR+  +Y  SL+ +G LDNQF +L++LQDE  PDFVAEVVSLFF D  +L+N ++ 
Sbjct: 6   VAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSI 65

Query: 63  ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           +L++P  +DFK VDS VHQLKGSSSS+GA R+KN C++F+  C+ QN EG
Sbjct: 66  SLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score =  128 bits (322), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 85/110 (77%), Gaps = 1/110 (0%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
           + Q+QR+  +YT SL+ +G LD+QF +L++LQD+ +PDFV+EV+SLFF D  +L++++ R
Sbjct: 5   IAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMAR 64

Query: 63  ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           ALD   T+DF  V + VHQLKGSSSS+GA+R+K  CV+F+  CE +N EG
Sbjct: 65  ALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 71/93 (76%)

Query: 19  MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHV 78
           M+G LD QF++L++LQD++NP+FV EV +L+F DS RL+N++ +AL++ + DF  +DS++
Sbjct: 8   MQGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYM 67

Query: 79  HQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           HQ KGSS+SIGA ++K  C  FR +C   N EG
Sbjct: 68  HQFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDES-NPDFVAEVVSLFFADSERLLND 59
           M    ++ +L     S+F +G++D QF QLQ LQDE   P FV+EVV+LF  D++R++N+
Sbjct: 1   MAAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINE 60

Query: 60  LTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           +   L+QP ++F  VD++VHQLKGSS+S+GA+++K  C+ FR FC++++ +G
Sbjct: 61  IATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 71/97 (73%), Gaps = 1/97 (1%)

Query: 16  SLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSER-LLNDLTRALDQPTIDFKMV 74
           SLF +GVLD QFLQLQQLQDE++P+FV +V++++F +SE+ L N     +D+   D+K +
Sbjct: 19  SLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLMDREFSDYKKI 78

Query: 75  DSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
             H++QL GSSSSIGA R++N CVAFR+  E  N  G
Sbjct: 79  GLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 27  FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSS 86
           F QL ++ D+   +F   +V  +F  +E  + DL +AL+    D K + S  H LKGSS+
Sbjct: 171 FDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK--DLKKLSSLGHFLKGSSA 228

Query: 87  SIGAERIKNACVAFRNFCEEQNIEG 111
            +G  +++  C   +N+   ++ +G
Sbjct: 229 VLGLTKMRKVCERIQNYGSLRSRDG 253

Binds to the msc4 response regulator which is part of a multistep phosphorelay system that transmits oxidative stress signals to the spc1 MAPK cascade.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
255551577	154	Histidine-containing phosphotransfer pro	1.0	0.720	0.828	1e-46
225432442	152	PREDICTED: histidine-containing phosphot	1.0	0.730	0.783	5e-45
449454450	154	PREDICTED: histidine-containing phosphot	1.0	0.720	0.729	8e-43
13774348	151	histidine-containing phosphotransfer pro	1.0	0.735	0.765	1e-42
359479780	151	PREDICTED: histidine-containing phosphot	1.0	0.735	0.702	5e-41
351726317	146	uncharacterized protein LOC100306665 [Gl	0.981	0.746	0.715	2e-40
224102543	154	histidine phosphotransfer protein [Popul	1.0	0.720	0.810	2e-40
52673256	154	putative histidine-containing phosphotra	1.0	0.720	0.810	2e-40
225451088	150	PREDICTED: histidine-containing phosphot	0.981	0.726	0.724	3e-40
356576753	150	PREDICTED: histidine-containing phosphot	0.981	0.726	0.706	4e-40

>gi|255551577|ref|XP_002516834.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223543922|gb|EEF45448.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 98/111 (88%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQMQR  +EYTKSLF EG+LD QF QLQ LQDESNPDFV EVVSLFFADSERLLN+L
Sbjct: 1   MEVGQMQRTWVEYTKSLFREGILDGQFTQLQLLQDESNPDFVVEVVSLFFADSERLLNEL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           T ALDQ  IDFK VD+HVHQLKGSSSSIGA+R+KNACVAFRNFCE QN EG
Sbjct: 61  TSALDQQIIDFKRVDAHVHQLKGSSSSIGAQRVKNACVAFRNFCEGQNPEG 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432442|ref|XP_002278411.1| PREDICTED: histidine-containing phosphotransfer protein 1 isoform 1 [Vitis vinifera] gi|297736940|emb|CBI26141.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 96/111 (86%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEV QMQRR +EY  SLF EG LD QF QLQQLQDESNPDFV EVVSLFF DSE+LLNDL
Sbjct: 1   MEVVQMQRRFVEYAASLFREGFLDGQFTQLQQLQDESNPDFVVEVVSLFFEDSEKLLNDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           +RALDQ  +DFK VDSHVHQLKGSSSSIGA+R+KNAC+AFRN+CEEQN + 
Sbjct: 61  SRALDQQNVDFKRVDSHVHQLKGSSSSIGAQRVKNACIAFRNYCEEQNTDA 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454450|ref|XP_004144968.1| PREDICTED: histidine-containing phosphotransfer protein 1-like [Cucumis sativus] gi|449471211|ref|XP_004153242.1| PREDICTED: histidine-containing phosphotransfer protein 1-like [Cucumis sativus] gi|449515185|ref|XP_004164630.1| PREDICTED: histidine-containing phosphotransfer protein 1-like [Cucumis sativus]

 Score =  177 bits (449), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 97/111 (87%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVG MQR+ ++YTKSLF+E  LD+QF++LQ+LQDE NPDF+ EVVSLFF DSERLLNDL
Sbjct: 1   MEVGLMQRQWVDYTKSLFLEDFLDSQFIELQKLQDEGNPDFIVEVVSLFFEDSERLLNDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           T A DQP +DF+ VD HVHQLKGSSSSIGA+R+KN C+A R+FCEEQNI+G
Sbjct: 61  TAAFDQPDVDFQKVDGHVHQLKGSSSSIGAQRVKNVCIAMRSFCEEQNIDG 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13774348|gb|AAK38843.1|AF346308_1 histidine-containing phosphotransfer protein [Catharanthus roseus]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/111 (76%), Positives = 97/111 (87%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQ+QR  +E+T+SLF EG LD QF QLQQLQDE+NPDFV EVVSLFF DSE+LLNDL
Sbjct: 1   MEVGQLQRSFVEFTESLFREGFLDAQFCQLQQLQDENNPDFVIEVVSLFFEDSEKLLNDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           TRALDQ  +DFK VD+ VHQLKGSSSSIGAER+KNAC+AFRNFC+E NI+ 
Sbjct: 61  TRALDQQDVDFKKVDACVHQLKGSSSSIGAERVKNACIAFRNFCDELNIDA 111

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479780|ref|XP_002272153.2| PREDICTED: histidine-containing phosphotransfer protein 5-like [Vitis vinifera] gi|296086667|emb|CBI32302.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 96/111 (86%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           M+VGQ+QR+  +YT SLF EG LD+QF QLQ+LQDE+NPDFV EVVSLFF DSE+L+N++
Sbjct: 1   MDVGQLQRQFTDYTASLFREGFLDDQFTQLQKLQDENNPDFVFEVVSLFFDDSEKLVNNM 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
            +AL+Q T++FK VD+HVHQ KGSSSSIGA R+KN CV FRNFCE+QNIEG
Sbjct: 61  AKALEQQTVEFKQVDAHVHQFKGSSSSIGAHRVKNVCVTFRNFCEQQNIEG 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726317|ref|NP_001238402.1| uncharacterized protein LOC100306665 [Glycine max] gi|255629219|gb|ACU14954.1| unknown [Glycine max]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 95/109 (87%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
           + Q+QR+L++YT SLF EG LD+QF QLQQLQDESNPDFV EVV+LFF D+ERLLN+LT+
Sbjct: 4   IVQLQRQLVDYTASLFHEGFLDDQFNQLQQLQDESNPDFVVEVVTLFFEDAERLLNELTK 63

Query: 63  ALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
            L QP+IDFK +D+HVHQLKGSSSSIGA+RI   C++FRN CEEQN+EG
Sbjct: 64  TLGQPSIDFKRLDAHVHQLKGSSSSIGAQRIHRVCISFRNSCEEQNVEG 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102543|ref|XP_002312719.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222852539|gb|EEE90086.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 95/111 (85%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQMQR  +EYTKSLF EG LD QF QLQ LQDESNPDFVAEVVSLFF DSERLL DL
Sbjct: 1   MEVGQMQRAWVEYTKSLFREGFLDAQFQQLQLLQDESNPDFVAEVVSLFFEDSERLLTDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           T AL+Q  IDFK VD+HVHQ KGSSSSIGA R+KN C+AFRNFCEEQNIEG
Sbjct: 61  TSALEQQNIDFKKVDAHVHQFKGSSSSIGALRVKNDCIAFRNFCEEQNIEG 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673256|emb|CAH56500.1| putative histidine-containing phosphotransfer protein 2 [Populus x canadensis]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 95/111 (85%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQMQR  +EYTKSLF EG LD QF QLQ LQDESNPDFVAEVVSLFF DSERLL DL
Sbjct: 1   MEVGQMQRAWVEYTKSLFREGFLDAQFQQLQLLQDESNPDFVAEVVSLFFEDSERLLTDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           T AL+Q  IDFK VD+HVHQ KGSSSSIGA R+KN C+AFRNFCEEQNIEG
Sbjct: 61  TSALEQQNIDFKKVDAHVHQFKGSSSSIGALRVKNDCIAFRNFCEEQNIEG 111

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451088|ref|XP_002265307.1| PREDICTED: histidine-containing phosphotransfer protein 1 [Vitis vinifera] gi|298205016|emb|CBI34323.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 93/109 (85%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
           V Q+QR+LL+YT  LF EG L++QF QLQQLQDE+NPDFV EVVSLFF DSERLLN+L  
Sbjct: 4   VVQLQRQLLDYTTQLFQEGFLNDQFTQLQQLQDETNPDFVVEVVSLFFEDSERLLNELAN 63

Query: 63  ALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
            LDQ +IDF+ VDSHVHQLKGSSSSIGA+R++N C+AFRNFC+ QN EG
Sbjct: 64  TLDQQSIDFRKVDSHVHQLKGSSSSIGAQRVQNVCIAFRNFCDAQNTEG 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576753|ref|XP_003556494.1| PREDICTED: histidine-containing phosphotransfer protein 1-like [Glycine max]

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 96/109 (88%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
           + Q++R+L++YT SLF EG LD+QF QLQQLQDESNPDFV EVV+LFF D++RLLN+LT+
Sbjct: 4   IVQLERQLVDYTASLFHEGFLDDQFNQLQQLQDESNPDFVVEVVTLFFEDADRLLNELTK 63

Query: 63  ALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           AL QP+IDFK +D+HVHQLKGSSSSIGA+RI   C++FRN CEEQN+EG
Sbjct: 64  ALGQPSIDFKRLDAHVHQLKGSSSSIGAQRIHRVCISFRNTCEEQNVEG 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.990	0.714	0.636	3.1e-35
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.981	0.694	0.527	4.5e-27
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.981	0.703	0.518	1.2e-26
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.981	0.698	0.481	7.6e-25
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.981	0.707	0.418	1.6e-17
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.459	0.305	0.452	3.8e-07
UNIPROTKB|G4MTL0	135	MGG_07173 "Uncharacterized pro	0.675	0.555	0.298	1.1e-05
CGD|CAL0001843	184	YPD1 [Candida albicans (taxid:	0.792	0.478	0.233	0.00018
UNIPROTKB|Q59WC6	184	YPD1 "Putative uncharacterized	0.792	0.478	0.233	0.00018
POMBASE|SPBC725.02	295	mpr1 "histidine-containing res	0.675	0.254	0.285	0.00024

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 70/110 (63%), Positives = 90/110 (81%)

Query:     1 MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
             M++ Q Q+ L +YTKSLF+EG+LD+         DESNPDFV++VV+LFF DS+R+LNDL
Sbjct:     1 MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 60

Query:    61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
             + +LDQ  +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E
Sbjct:    61 SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVE 110

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 58/110 (52%), Positives = 77/110 (70%)

Query:     3 VGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDLTR 62
             V Q+QR+  +Y  SL+ +G LDN         DE  PDFVAEVVSLFF D  +L+N ++ 
Sbjct:     6 VAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSI 65

Query:    63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
             +L++P  +DFK VDS VHQLKGSSSS+GA R+KN C++F+  C+ QN EG
Sbjct:    66 SLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 57/110 (51%), Positives = 78/110 (70%)

Query:     3 VGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDLTR 62
             + Q+QRR  ++T SL+ +G LD+         DE +PDFVAEVV+LFF D E+L++++ R
Sbjct:     5 IAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMAR 64

Query:    63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
             ALDQ   +DFK+V S VHQLKGSSSS+GA+R+K  CV  +  C+ QN EG
Sbjct:    65 ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/110 (48%), Positives = 77/110 (70%)

Query:     3 VGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDLTR 62
             + Q+QR+  +YT SL+ +G LD+         D+ +PDFV+EV+SLFF D  +L++++ R
Sbjct:     5 IAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMAR 64

Query:    63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
             ALD   T+DF  V + VHQLKGSSSS+GA+R+K  CV+F+  CE +N EG
Sbjct:    65 ALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/110 (41%), Positives = 69/110 (62%)

Query:     3 VGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDLTR 62
             V ++Q  +     SLF +GVLD          DE++P+FV +V++++F +SE+LL +L  
Sbjct:     6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65

Query:    63 AL-DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
              L D+   D+K +  H++QL GSSSSIGA R++N CVAFR+  E  N  G
Sbjct:    66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPG 115

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query:    21 GVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDLTRALDQPT--IDF 71
             G LD+         D+ +PDFVAEV+SLFF D  +L++++ RALD+ T  +DF
Sbjct:    24 GFLDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDF 76

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

UNIPROTKB|G4MTL0 MGG_07173 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 23/77 (29%), Positives = 41/77 (53%)

Query:    35 DESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIK 94
             DE+  DF   +V  FF  +E     + +AL     D K + S  H LKGSS+++G  ++K
Sbjct:    22 DEAERDFSKPLVMGFFEQAEETFEKMDKALKDR--DLKELSSLGHFLKGSSATLGFTKVK 79

Query:    95 NACVAFRNFCEEQNIEG 111
             ++C   + +  +  ++G
Sbjct:    80 DSCQVIQQYGNKLKLDG 96

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0001843 YPD1 [Candida albicans (taxid:5476)]

 Score = 93 (37.8 bits), Expect = 0.00018, P = 0.00018
 Identities = 21/90 (23%), Positives = 42/90 (46%)

Query:    21 GVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ 80
             G++D          DE    F   +V +F +  E    ++ + L +  ++   + S  H 
Sbjct:    13 GLVDWAVFSEIVTMDEDEEGFSKSLVEVFVSQVEETFEEIDKYLKEKNLE--KLSSSGHF 70

Query:    81 LKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
             LKGS++++G  +I N C   +N+  + N +
Sbjct:    71 LKGSAAALGLTKISNQCERIQNYGHKINFD 100

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0043424 "protein histidine kinase binding" evidence=IEA

UNIPROTKB|Q59WC6 YPD1 "Putative uncharacterized protein YPD1" [Candida albicans SC5314 (taxid:237561)]

 Score = 93 (37.8 bits), Expect = 0.00018, P = 0.00018
 Identities = 21/90 (23%), Positives = 42/90 (46%)

Query:    21 GVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ 80
             G++D          DE    F   +V +F +  E    ++ + L +  ++   + S  H 
Sbjct:    13 GLVDWAVFSEIVTMDEDEEGFSKSLVEVFVSQVEETFEEIDKYLKEKNLE--KLSSSGHF 70

Query:    81 LKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
             LKGS++++G  +I N C   +N+  + N +
Sbjct:    71 LKGSAAALGLTKISNQCERIQNYGHKINFD 100

GO:0005829 "cytosol" evidence=ISS

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

POMBASE|SPBC725.02 mpr1 "histidine-containing response regulator phosphotransferase Mpr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 96 (38.9 bits), Expect = 0.00024, P = 0.00024
 Identities = 22/77 (28%), Positives = 41/77 (53%)

Query:    35 DESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIK 94
             D+   +F   +V  +F  +E  + DL +AL+    D K + S  H LKGSS+ +G  +++
Sbjct:   179 DDDEHEFSKSIVWNYFEQAETTIADLQKALEAK--DLKKLSSLGHFLKGSSAVLGLTKMR 236

Query:    95 NACVAFRNFCEEQNIEG 111
               C   +N+   ++ +G
Sbjct:   237 KVCERIQNYGSLRSRDG 253

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZNV9	AHP1_ARATH	No assigned EC number	0.7117	1.0	0.7207	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: HP3 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (152 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	111
cd00088	94	cd00088, HPT, Histidine Phosphotransfer domain, in	1e-10
pfam01627	87	pfam01627, Hpt, Hpt domain	2e-09
COG2198	122	COG2198, ArcB, FOG: HPt domain [Signal transductio	1e-04
smart00073	92	smart00073, HPT, Histidine Phosphotransfer domain	7e-04

>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

 Score = 53.2 bits (128), Expect = 1e-10
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 42  VAEVVSLFFADSERLLNDLTRALDQ--PTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA 99
           + E++ LF  ++E LL +L RAL +     D   +    H LKGS++S+G +R+      
Sbjct: 1   MEELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQ 60

Query: 100 FRNFCEEQN 108
             +  +   
Sbjct: 61  LEDLLDALR 69

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 49.7 bits (119), Expect = 2e-09
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 44  EVVSLFFADSERLLNDLTRALDQPTI-DFKMVDSHVHQLKGSSSSIGAERIKNACVAFRN 102
           E++ LF  ++  LL  L +AL      D + +    H LKGS+ S+G   +        +
Sbjct: 1   ELLELFLEEAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAELAHELED 60

Query: 103 FCEEQN 108
                 
Sbjct: 61  LLRAGR 66

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

>gnl|CDD|225108 COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 28 LQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSS 87
          ++L       +PD + E++++F  ++   L  L  AL     D   +    H+LKGS++S
Sbjct: 11 IELLVRLIGGDPDLLRELLAMFLEEAPAQLEQLESALA--AEDNDGLARLAHRLKGSAAS 68

Query: 88 IGAERIKNAC 97
          +G   +   C
Sbjct: 69 LGLPALAQLC 78

Length = 122

>gnl|CDD|197502 smart00073, HPT, Histidine Phosphotransfer domain

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 38  NPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNAC 97
             +   E ++ F    E  L +L +ALD   ++   +    H LKGS+ S+G +++   C
Sbjct: 2   GLELFREELAEFLQSLEEGLLELEKALDAQDVNE--IFRAAHTLKGSAGSLGLQQLAQLC 59

Query: 98  VAFRN 102
               N
Sbjct: 60  HQLEN 64

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG4747	150	consensus Two-component phosphorelay intermediate	99.81
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.59
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.58
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.51
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.45
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.2
PRK10618	894	phosphotransfer intermediate protein in two-compon	98.99
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.58
PRK11091	779	aerobic respiration control sensor protein ArcB; P	98.57
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	98.44
PRK10547	670	chemotaxis protein CheA; Provisional	98.42
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.36
PRK09959	1197	hybrid sensory histidine kinase in two-component r	97.01
PRK15347	921	two component system sensor kinase SsrA; Provision	96.98
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	91.74
PF05396	123	Phage_T7_Capsid: Phage T7 capsid assembly protein;	90.2
PRK01356	166	hscB co-chaperone HscB; Provisional	87.71
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	86.75
cd08323	86	CARD_APAF1 Caspase activation and recruitment doma	84.26

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.81  E-value=4.7e-19  Score=121.48  Aligned_cols=108  Identities=66%  Similarity=1.016  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHHHHhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824            3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      |.+|+++...+.+|++++|++|.+|.+|++|.++..|+|+.+++..|++++...+..++.|+..+. |+..+....|.+|
T Consensus         5 i~~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlk   83 (150)
T KOG4747|consen    5 IISMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLK   83 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHcc
Confidence            678999999999999999999999999999999999999999999999999999999999998875 9999999999999


Q ss_pred             hhhhhhChHHHHHHHHHHHHHHHhhccCC
Q 033824           83 GSSSSIGAERIKNACVAFRNFCEEQNIEG  111 (111)
Q Consensus        83 Gsa~~lGa~~L~~~~~~lE~~~~~gd~~g  111 (111)
                      ||+.++||.++...|..+...|+.++.+|
T Consensus        84 gssssIGa~kvk~~c~~~~~~~~~~n~eg  112 (150)
T KOG4747|consen   84 GSSSSIGALKVKKVCVGFNEFCEAGNIEG  112 (150)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHhhccchh
Confidence            99999999999999999999999999886

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.59  E-value=9.3e-15  Score=97.49  Aligned_cols=69  Identities=25%  Similarity=0.481  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033824           37 SNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQ  107 (111)
Q Consensus        37 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~g  107 (111)
                      ++++++.+++..|+++.++.+..+..++..+  |+..+.+.||+|||+|+++|+.+|...|..+|..++.+
T Consensus        20 ~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~--d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~~   88 (122)
T COG2198          20 GDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRSG   88 (122)
T ss_pred             CChHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHcC
Confidence            6799999999999999999999999999999  99999999999999999999999999999999999874

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.58  E-value=8e-15  Score=91.36  Aligned_cols=64  Identities=25%  Similarity=0.474  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033824           44 EVVSLFFADSERLLNDLTRAL---DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNI  109 (111)
Q Consensus        44 ~ll~~F~~~~~~~l~~L~~a~---~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd~  109 (111)
                      +++..|+++.++.+..|++++   ..+  |++.+.+.+|+|||+++++|+.++..+|..+|..++.++.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~~--d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~   67 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQE--DWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDK   67 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHHC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCc
Confidence            589999999999999999999   888  9999999999999999999999999999999999998764

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.51  E-value=6.7e-14  Score=87.48  Aligned_cols=63  Identities=29%  Similarity=0.470  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhc
Q 033824           44 EVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQN  108 (111)
Q Consensus        44 ~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd  108 (111)
                      +++..|+++.+..+..|..++..+  |+..+.+.+|+|||+|+++|+..|..+|..+|..++...
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~~~--~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~   64 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALDAQ--DVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAAR   64 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCHh--HHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999988  999999999999999999999999999999999988654

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.45  E-value=3.6e-13  Score=85.64  Aligned_cols=64  Identities=30%  Similarity=0.527  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhc
Q 033824           43 AEVVSLFFADSERLLNDLTRALD----QPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQN  108 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~~----~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd  108 (111)
                      .+++..|+++.++.+..|.+++.    ..  |+..+.+.+|+|||+++++|+.++...|..+|.+++.+.
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~--d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~   69 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAE--DLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALR   69 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999    78  999999999999999999999999999999999999864

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.20  E-value=8.7e-11  Score=99.24  Aligned_cols=74  Identities=24%  Similarity=0.371  Sum_probs=69.7

Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033824           35 DESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIE  110 (111)
Q Consensus        35 ~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd~~  110 (111)
                      ...+++.+.+++..|+++.+..+..|..++..+  |+..+++.+|+|||+++++|+.+++.+|..||..++.|++.
T Consensus       874 ~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~--d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le~~~~~~~~~  947 (968)
T TIGR02956       874 EVLGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIKKLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGALE  947 (968)
T ss_pred             HhcCcHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcccCCcc
Confidence            446788999999999999999999999999999  99999999999999999999999999999999999988753

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=98.99  E-value=1.5e-09  Score=92.91  Aligned_cols=64  Identities=19%  Similarity=0.290  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033824           44 EVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNI  109 (111)
Q Consensus        44 ~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd~  109 (111)
                      .+...|++..|.++..|..++..+  |+..+.+.||+|||+++++|+..+.++|..||+.++.+|.
T Consensus       811 ~~~~lF~~t~~~di~~L~~~~~~~--D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~  874 (894)
T PRK10618        811 DYYALFVDTVPDDVKRLYTEAATS--DFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDE  874 (894)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCh
Confidence            456899999999999999999999  9999999999999999999999999999999999998875

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.58  E-value=2.6e-07  Score=78.07  Aligned_cols=68  Identities=25%  Similarity=0.329  Sum_probs=62.8

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033824           36 ESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE  105 (111)
Q Consensus        36 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~  105 (111)
                      ..+++.+.+++..|..+.+..+..+..+...+  |+..+.+++|+|||+++++|+..+..+|..+|.++.
T Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~~  886 (914)
T PRK11466        819 LMGTEKIHEWLALFKQHALPLLDEIDIARASQ--DSEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQPL  886 (914)
T ss_pred             hcCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCC
Confidence            34667788999999999999999999999999  999999999999999999999999999999998653

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=98.57  E-value=2.9e-07  Score=76.86  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             HHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhc
Q 033824           30 LQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQN  108 (111)
Q Consensus        30 L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd  108 (111)
                      +..+.+..+...+...+..|.+..+..++.+..++..+  |+..+...+|+|||+++++|+..++.+|..+|.....+.
T Consensus       671 l~~~~~~~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~  747 (779)
T PRK11091        671 LEQYVELVGPKLITDSLAVFEKMMPGYLSVLDSNLTAR--DQKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAW  747 (779)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCcccc
Confidence            33444445667888999999999999999999999999  999999999999999999999999999999998766554

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.44  E-value=1e-06  Score=74.09  Aligned_cols=66  Identities=23%  Similarity=0.399  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033824           39 PDFVAEVVSLFFADSERLLNDLTRAL---DQPTIDF---KMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC  104 (111)
Q Consensus        39 ~~~~~~ll~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~  104 (111)
                      .....+++..|+.++++.++.|.+.+   +..+.|.   ..+.+.||+|||+||++|+..+..+|+.+|...
T Consensus         3 ~~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~l   74 (716)
T COG0643           3 SMDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLL   74 (716)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHH
Confidence            45678899999999999999999864   3322244   477999999999999999999999999999753

>PRK10547 chemotaxis protein CheA; Provisional

Probab=98.42  E-value=1.4e-06  Score=72.89  Aligned_cols=63  Identities=21%  Similarity=0.429  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033824           43 AEVVSLFFADSERLLNDLTRAL---DQPTIDF---KMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE  105 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~  105 (111)
                      .+++..|++++.+.++.|++.+   +..+.|.   ..+.+.+|+|||+|+++|+..+..+|+.+|....
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld   72 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLD   72 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHH
Confidence            5789999999999999998874   4333353   5778999999999999999999999999997653

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.36  E-value=3e-06  Score=71.34  Aligned_cols=71  Identities=21%  Similarity=0.343  Sum_probs=66.3

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhc
Q 033824           36 ESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQN  108 (111)
Q Consensus        36 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd  108 (111)
                      .+.++...+++..|.++.+..+..|..++...  |+..+...+|++||+++++|+.++..+|..+|+.++.+.
T Consensus       820 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~  890 (919)
T PRK11107        820 AGKPDLARDMLQMLLDFLPEVRNKVEEALAGE--DPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGT  890 (919)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence            35778889999999999999999999999999  999999999999999999999999999999999998653

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=97.01  E-value=0.0054  Score=53.73  Aligned_cols=69  Identities=13%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhh
Q 033824           37 SNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQ  107 (111)
Q Consensus        37 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~g  107 (111)
                      .+...+.+++..|.......+..+..+...+  |...+...+|+++|++..+|+..+...|.++|......
T Consensus      1097 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~ 1165 (1197)
T PRK09959       1097 NDLQLMQEILMTFQHETHKDLPAAFHALEAG--DNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSD 1165 (1197)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcC
Confidence            5667889999999999999999999999999  99999999999999999999999999999999877644

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.98  E-value=0.0034  Score=53.19  Aligned_cols=61  Identities=21%  Similarity=0.389  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033824           45 VVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNI  109 (111)
Q Consensus        45 ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd~  109 (111)
                      +...+.+.....+..+..++..+  |  .+.+.+|++||+++.+|+.++...|..+|..++.+..
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~--~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~  898 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQ--E--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEI  898 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCH--H--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCC
Confidence            34455556677888888888887  6  8999999999999999999999999999999887653

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=91.74  E-value=1.9  Score=26.11  Aligned_cols=51  Identities=20%  Similarity=0.334  Sum_probs=40.8

Q ss_pred             HHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824           30 LQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus        30 L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      |......++.+-+..+....-......+..|..++..+  ||..+....++||
T Consensus        17 le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~--d~~~A~~~~~kLk   67 (78)
T PF07743_consen   17 LEEAQNSDDEAELEELKKEIEERIKELIKELAEAFDAK--DWEEAKEALRKLK   67 (78)
T ss_dssp             HHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cHHHHHHHHHHHH
Confidence            33433335667888888888888899999999999999  9999999999985

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7

Probab=90.20  E-value=4  Score=27.54  Aligned_cols=61  Identities=16%  Similarity=0.175  Sum_probs=47.1

Q ss_pred             hcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Q 033824           20 EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGS   84 (111)
Q Consensus        20 ~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs   84 (111)
                      +-++|.-++.+...  .|+++-+..++...-...|+.++.+..+++.+  |..+++.+.--+.++
T Consensus        29 eAL~~~yV~~V~~~--AGG~e~f~~i~~~~~~~~~~~~ea~~~Ai~~~--dla~vk~~vn~~~~s   89 (123)
T PF05396_consen   29 EALAEQYVNSVKGY--AGGEEGFAAIMSHAEANSPAAAEAFNEAIESG--DLATVKAAVNLAGAS   89 (123)
T ss_pred             HHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence            34455434455555  48899999999998888999999999999999  999988876655543

; GO: 0019069 viral capsid assembly

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=87.71  E-value=5.1  Score=28.12  Aligned_cols=59  Identities=8%  Similarity=0.137  Sum_probs=36.2

Q ss_pred             chhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824           22 VLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus        22 ~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      .|.+.+..-+.+.+..+.+-+.++....-......+..|.+++..+  ||+.+...+-+||
T Consensus        91 fLme~me~rE~le~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~--d~~~A~~~~~~L~  149 (166)
T PRK01356         91 ELSIFWDEMERIENTILFSDLEKIKNKYELMYKNEIDSLKQAFEEQ--NLSDATIKTSKLK  149 (166)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            3334333333444444555556666666666667777888888888  9887777665554

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=86.75  E-value=6.1  Score=27.44  Aligned_cols=52  Identities=10%  Similarity=0.147  Sum_probs=39.2

Q ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824           29 QLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus        29 ~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      .+.++....+.+-+..+....-.........|..++..+  ||..+...+.+||
T Consensus        89 ~lee~~~~~d~~~L~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kLk  140 (157)
T TIGR00714        89 ELDEIEQAKDEARLESFIKRVKKMFQTRHQLLVEQLDNQ--TWAAAADYTRKLR  140 (157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence            344444455667777777777777777888888999999  9998888877765

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1

Probab=84.26  E-value=8.1  Score=24.30  Aligned_cols=67  Identities=10%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             HHHHHHhhhhhcchhHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033824           10 LLEYTKSLFMEGVLDNQFLQLQQLQD-ESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ   80 (111)
Q Consensus        10 ~~~~~~~~~~~~~ld~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   80 (111)
                      ....+..++.+|++++.  ..+.+.. ....+-..+++.......+.-...+..++...  .+..++.+.|.
T Consensus        16 v~~ild~L~~~gvlt~~--~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~--~~~~La~lL~~   83 (86)
T cd08323          16 TSYIMDHMISDGVLTLD--EEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHE--GYKDLALLLHD   83 (86)
T ss_pred             HHHHHHHHHhcCCCCHH--HHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CChHHHHHHhc
Confidence            45577888889999974  3444443 34577788999999999999999999998765  67777777653

Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		2e-39
4euk_B	159	Crystal Structure Length = 159		2e-38
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		3e-21
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		6e-21

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score =  156 bits (395), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/111 (65%), Positives = 90/111 (81%)
Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQM+R+ ++Y KS+FMEG LD          DE+NP+FV EVVSLFF DSER+L DL
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60
Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           + A+DQ +IDFK VD+HVHQ KGSS+SIGA+R+KN+CVAFRNFCEEQNI+ 
Sbjct: 61  SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 90/111 (81%)
Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
           M++ Q Q+ L +YTKSLF+EG+LD+         DESNPDFV++VV+LFF DS+R+LNDL
Sbjct: 6   MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 65
Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           + +LDQ  +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E 
Sbjct: 66  SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 116

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNX-XXXXXXXXDESNPDFVAEVVSLFFADSERLLND 59
           M    ++ +L     S+F  G++D           D   P FVAEVV+LF  D++R++++
Sbjct: 1   MAAAALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISE 60
Query: 60  LTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           L   LDQP +DF  VD++VHQLKGSS+S+GA+++K  C+ FR  C+++N +G
Sbjct: 61  LAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDG 112

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 9   RLLEYTKSLFMEGVLDNXXXXXXXXXDES-NPDFVAEVVSLFFADSERLLNDLTRALDQP 67
           +L     S+F +G++D          DE   P FV+EVV+LF  D++R++N++   L+QP
Sbjct: 9   QLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQP 68
Query: 68  TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
            ++F  VD++VHQLKGSS+S+GA+++K  C+ FR FC++++ +G
Sbjct: 69  VVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	6e-39
3us6_A	153	Histidine-containing phosphotransfer protein type	1e-38
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	6e-24
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	2e-12
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	2e-08
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	3e-07
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	5e-07
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	6e-07

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  126 bits (318), Expect = 6e-39
 Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDES-NPDFVAEVVSLFFADSERLLNDLT 61
              ++ +L     S+F +G++D QF QLQ LQDE   P FV+EVV+LF  D++R++N++ 
Sbjct: 3   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 62

Query: 62  RALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
             L+QP ++F  VD++VHQLKGSS+S+GA+++K  C+ FR FC++++ +G
Sbjct: 63  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 112

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  125 bits (316), Expect = 1e-38
 Identities = 82/111 (73%), Positives = 99/111 (89%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQM+R+ ++Y KS+FMEG LD QFLQLQQLQDE+NP+FV EVVSLFF DSER+L DL
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           + A+DQ +IDFK VD+HVHQ KGSS+SIGA+R+KN+CVAFRNFCEEQNI+ 
Sbjct: 61  SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 89.1 bits (220), Expect = 6e-24
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 16  SLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVD 75
           ++  E +      ++  + D+ + DF   ++  F   ++     + R LD    +   +D
Sbjct: 3   TIPSEIINWTILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK-NLTELD 60

Query: 76  SHVHQLKGSSSSIGAERIKNACVAFRNFCEEQN 108
           +  H LKGSS+++G +RI   C   +N   +  
Sbjct: 61  NLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 22  VLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQL 81
           VL+ Q  ++++L  E   D V  ++ +F  + +  +  LT            +    H L
Sbjct: 11  VLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHAL 66

Query: 82  KGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           K S++S GA+R+    +A     +   ++ 
Sbjct: 67  KSSAASFGADRLCERAIAIDKKAKANQLQE 96

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 47.7 bits (113), Expect = 2e-08
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 20  EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVH 79
           E +LD   L+  Q  +   P  + + +++F       ++ L   L     D K +    H
Sbjct: 9   EALLDIPMLE--QYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGH 64

Query: 80  QLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
           ++KG++ S+G   ++      ++       +
Sbjct: 65  KIKGAAGSVGLRHLQQLGQQIQSPDLPAWED 95

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 30 LQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIG 89
          L Q       +   E++ +        +  +  AL Q   D   + S +H+L G+S   G
Sbjct: 12 LTQANH--KSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCG 67

Query: 90 AERIKNAC 97
              +  C
Sbjct: 68 VPTTQRLC 75

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli} Length = 123

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 38 NPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNAC 97
            D   +++ +       + N +   L     + + +   +H+L GS    G  R+KN C
Sbjct: 27 KTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLC 84

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Length = 113

 Score = 43.5 bits (102), Expect = 6e-07
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHV 78
          + G +D  +L+     D      V EV++LF   +      L                 V
Sbjct: 7  ISGAVDFAYLEGFAAGD---FAVVDEVLALFREQAALWAPMLDPTHPG-------WKDAV 56

Query: 79 HQLKGSSSSIGAERIKNAC 97
          H +KG++  +GA  +   C
Sbjct: 57 HTVKGAARGVGAFNLGEVC 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
3us6_A	153	Histidine-containing phosphotransfer protein type	99.97
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	99.95
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.88
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.8
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.78
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.76
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.75
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.6
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.58
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.5
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.4
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.35
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.34
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	99.07
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.87
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	88.99
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	85.9
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	85.17
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	84.43

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=99.97  E-value=7.4e-31  Score=181.60  Aligned_cols=110  Identities=75%  Similarity=1.168  Sum_probs=105.7

Q ss_pred             CchHHHHHHHHHHHHhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 033824            1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ   80 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   80 (111)
                      |++.+|++++.+|++|++++|+||++|.+|++|.++++++|+.+++..|++++++.+..|+.+++.+++|+..+.+.||+
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~   80 (153)
T 3us6_A            1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ   80 (153)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            89999999999999999999999999999999999899999999999999999999999999999876799999999999


Q ss_pred             hhhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033824           81 LKGSSSSIGAERIKNACVAFRNFCEEQNIE  110 (111)
Q Consensus        81 LKGsa~~lGa~~L~~~~~~lE~~~~~gd~~  110 (111)
                      |||||+|+||.+|+.+|..||.+|+.++.+
T Consensus        81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~  110 (153)
T 3us6_A           81 FKGSSASIGAQRVKNSCVAFRNFCEEQNID  110 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999865

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=99.95  E-value=4.9e-27  Score=161.39  Aligned_cols=108  Identities=44%  Similarity=0.852  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHhhhhhcchhHHHHHHHhhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 033824            3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESN-PDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQL   81 (111)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~ld~~~~~L~~L~~~~~-~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L   81 (111)
                      +++|++|+..++++++++|+||.+|.+|.+|.++++ ++|+.+++..|+++++..+..|+.+++.+++|+..+.+++|+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L   82 (149)
T 1yvi_A            3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence            578999999999999999999987999999988778 9999999999999999999999999997645899999999999


Q ss_pred             hhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033824           82 KGSSSSIGAERIKNACVAFRNFCEEQNIE  110 (111)
Q Consensus        82 KGsa~~lGa~~L~~~~~~lE~~~~~gd~~  110 (111)
                      ||||+|+||.+|+.+|..+|.+++.++++
T Consensus        83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~  111 (149)
T 1yvi_A           83 KGSSASVGAQKVKFTCMQFRQFCQDKSRD  111 (149)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999998864

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.88  E-value=2.6e-22  Score=140.24  Aligned_cols=90  Identities=22%  Similarity=0.430  Sum_probs=85.9

Q ss_pred             hhhhhcchhH-HHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHH
Q 033824           16 SLFMEGVLDN-QFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALD-QPTIDFKMVDSHVHQLKGSSSSIGAERI   93 (111)
Q Consensus        16 ~~~~~~~ld~-~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~L   93 (111)
                      +|.+.|+||. +|.+|++|.+++ |+|+.++|..|++++++.+..|++|++ .+  |+..+..++|+|||||+|+||.+|
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV   78 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI   78 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence            6778899996 799999998866 999999999999999999999999999 88  999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 033824           94 KNACVAFRNFCEEQN  108 (111)
Q Consensus        94 ~~~~~~lE~~~~~gd  108 (111)
                      ..+|..||.+|+.++
T Consensus        79 ~~~C~~le~~~r~~n   93 (167)
T 2r25_A           79 AWVCERIQNLGRKME   93 (167)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999998

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.80  E-value=8.7e-20  Score=121.29  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=79.5

Q ss_pred             HhhhhhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHH
Q 033824           15 KSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIK   94 (111)
Q Consensus        15 ~~~~~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~   94 (111)
                      .++-+.+++|.  ..|.+|.+..|++++.+++..|++++++.+..|+.++..+  |+..+.+.+|+|||+|+++|+.+|+
T Consensus         4 ~~~~~~~~lD~--~~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~   79 (125)
T 2a0b_A            4 ENSKSEALLDI--PMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ   79 (125)
T ss_dssp             --CHHHHHSCH--HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccccccCCH--HHHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34556678885  4566666657899999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 033824           95 NACVAFRNFCEEQNI  109 (111)
Q Consensus        95 ~~~~~lE~~~~~gd~  109 (111)
                      .+|..+|..++.++.
T Consensus        80 ~~~~~lE~~~~~~~~   94 (125)
T 2a0b_A           80 QLGQQIQSPDLPAWE   94 (125)
T ss_dssp             HHHHHHTCTTSTTHH
T ss_pred             HHHHHHHHHHHcCCH
Confidence            999999999887653

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.78  E-value=1.6e-18  Score=115.08  Aligned_cols=86  Identities=16%  Similarity=0.239  Sum_probs=77.1

Q ss_pred             hhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033824           19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACV   98 (111)
Q Consensus        19 ~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~   98 (111)
                      |..++|  |.....+. +|+++++.+++.+|+++.|+.+..|+.++..+  |++.+.+.+|+|||+|+++|+++|..+|.
T Consensus         2 ~~~~~D--~~~~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~   76 (119)
T 3myf_A            2 DLHTLN--WDLCLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQ   76 (119)
T ss_dssp             CTTTCC--HHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred             CccccC--HHHHHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            455667  34555544 48999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHhhcc
Q 033824           99 AFRNFCEEQNI  109 (111)
Q Consensus        99 ~lE~~~~~gd~  109 (111)
                      .||++++.|..
T Consensus        77 ~LE~~~r~~~~   87 (119)
T 3myf_A           77 EIESALKRQTP   87 (119)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999863

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.76  E-value=4.5e-18  Score=113.57  Aligned_cols=85  Identities=16%  Similarity=0.256  Sum_probs=76.9

Q ss_pred             hcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033824           20 EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA   99 (111)
Q Consensus        20 ~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~   99 (111)
                      .+++|  |..+..+. +|+++++.+++.+|+++.++++..|+.++..+  |++.+.+.+|+|||+|+++|+++|..+|..
T Consensus        12 ~~~~D--~~~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~   86 (123)
T 3iqt_A           12 NATLD--WQLALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL   86 (123)
T ss_dssp             GGTCC--HHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred             CCccC--HHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            35566  44555554 48999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 033824          100 FRNFCEEQNI  109 (111)
Q Consensus       100 lE~~~~~gd~  109 (111)
                      ||++++.|+.
T Consensus        87 LE~~~r~g~~   96 (123)
T 3iqt_A           87 IEQQLRSGTK   96 (123)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999864

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.75  E-value=3.4e-19  Score=118.39  Aligned_cols=82  Identities=20%  Similarity=0.368  Sum_probs=75.6

Q ss_pred             HHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHh
Q 033824           27 FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEE  106 (111)
Q Consensus        27 ~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~  106 (111)
                      |.++.+|++..+++++.+++..|++++++.+..|+.+...+  |+..+.+.+|+|||||+++|+.+|+.+|..+|..+|.
T Consensus        14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~   91 (120)
T 1y6d_A           14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA   91 (120)
T ss_dssp             TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence            46777888778899999999999999999999999988777  8889999999999999999999999999999999999


Q ss_pred             hccC
Q 033824          107 QNIE  110 (111)
Q Consensus       107 gd~~  110 (111)
                      |+..
T Consensus        92 g~~~   95 (120)
T 1y6d_A           92 NQLQ   95 (120)
T ss_dssp             HHHC
T ss_pred             CChh
Confidence            8754

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.60  E-value=4.7e-16  Score=102.81  Aligned_cols=71  Identities=17%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhcc
Q 033824           37 SNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNI  109 (111)
Q Consensus        37 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd~  109 (111)
                      +.+..-.+++..|+++.++++..|..++..+  |+..+.+.+|+|||+++++|+++++.+|..+|.+++.++.
T Consensus        28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~   98 (116)
T 1sr2_A           28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDV   98 (116)
T ss_dssp             HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCH
T ss_pred             cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCH
Confidence            3456677899999999999999999999999  9999999999999999999999999999999999998874

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.58  E-value=1.2e-15  Score=100.31  Aligned_cols=77  Identities=23%  Similarity=0.360  Sum_probs=65.4

Q ss_pred             hcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 033824           20 EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA   99 (111)
Q Consensus        20 ~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~   99 (111)
                      .+.+|.  ..|..+. .++++|+.+++..|++++++.+..|..+  ..  ||   .+.+|+|||||+++||.++..+|..
T Consensus         8 ~~~iD~--~~L~~~~-~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~   77 (113)
T 2ooc_A            8 SGAVDF--AYLEGFA-AGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCER   77 (113)
T ss_dssp             -CCSCH--HHHHHHT-TTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCcCH--HHHHhHh-CCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            455663  4555543 5889999999999999999999999888  44  66   7999999999999999999999999


Q ss_pred             HHHHHHh
Q 033824          100 FRNFCEE  106 (111)
Q Consensus       100 lE~~~~~  106 (111)
                      +|..++.
T Consensus        78 lE~~~~~   84 (113)
T 2ooc_A           78 CEAGQES   84 (113)
T ss_dssp             HHTTSSC
T ss_pred             HHHHhhh
Confidence            9988764

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.50  E-value=5.2e-14  Score=90.62  Aligned_cols=66  Identities=20%  Similarity=0.359  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhcc
Q 033824           42 VAEVVSLFFADSERLLNDLTRALD--------QPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC---EEQNI  109 (111)
Q Consensus        42 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~---~~gd~  109 (111)
                      +.+++..|++++++.+..|+.++.        ..  ++..+.+.+|+|||+|+++|+..+..+|+.+|..+   +.|+.
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~   79 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI   79 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999985        34  67899999999999999999999999999999876   56553

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.40  E-value=1.3e-12  Score=88.40  Aligned_cols=65  Identities=22%  Similarity=0.423  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---Hhhcc
Q 033824           43 AEVVSLFFADSERLLNDLTRAL--------DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC---EEQNI  109 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~---~~gd~  109 (111)
                      .+++..|++++++.+..|..++        ...  ++..+.+.+|+|||+|+++|+..+..+|+.+|..+   +.|..
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~   78 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI   78 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999998        345  78999999999999999999999999999999865   56653

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.35  E-value=1e-12  Score=89.61  Aligned_cols=65  Identities=18%  Similarity=0.439  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HHhhcc
Q 033824           43 AEVVSLFFADSERLLNDLTRAL--------DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNF---CEEQNI  109 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~---~~~gd~  109 (111)
                      .+++..|++++++.++.|+.++        ...  ++..+.+.+|+|||+|+++|+..+..+|+.+|..   .+.|..
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~   81 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEM   81 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999998        223  4589999999999999999999999999999987   566653

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.34  E-value=2.8e-12  Score=83.66  Aligned_cols=62  Identities=13%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033824           43 AEVVSLFFADSERLLNDLTRALDQ---PTID---FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC  104 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~  104 (111)
                      .+++..|++++++.+..|..++..   .+.|   +..+.+.+|+|||+|+++|+..+..+|+.+|...
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l   72 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV   72 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence            578999999999999999998731   1113   5679999999999999999999999999999743

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=99.07  E-value=2.2e-10  Score=78.02  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH
Q 033824           42 VAEVVSLFFADSERLLNDLTRALD---QPTID---FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC  104 (111)
Q Consensus        42 ~~~ll~~F~~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~  104 (111)
                      +.+++..|++++++.++.|...+.   ..+.|   ...+.+.+|+|||+|+++|+..+..+|+.+|...
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll   77 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLI   77 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHH
Confidence            578899999999999999999863   22224   4578999999999999999999999999999865

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.87  E-value=5.8e-09  Score=75.27  Aligned_cols=63  Identities=19%  Similarity=0.391  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033824           43 AEVVSLFFADSERLLNDLTRAL---DQPTIDF---KMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE  105 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~  105 (111)
                      .+++..|++++.+.+..|.+.+   ...+.|.   ..+.|.+|+|||+|+++|+..+..+|+.+|....
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~   74 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD   74 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHH
Confidence            5679999999999999999885   3333353   5788999999999999999999999999997653

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=88.99  E-value=3  Score=28.65  Aligned_cols=62  Identities=11%  Similarity=0.022  Sum_probs=44.5

Q ss_pred             hhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824           19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus        19 ~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      +..+|.+.+.--++|.+..+.+-+..+....-....+....|..++..+  ||..+...+.+||
T Consensus       100 d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~  161 (181)
T 3uo3_A          100 DPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK  161 (181)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            3445554433334454445666677777778888888889999999999  9999988887765

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=85.90  E-value=4.2  Score=28.45  Aligned_cols=48  Identities=17%  Similarity=0.365  Sum_probs=34.6

Q ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824           33 LQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus        33 L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      |.+..+.+-+.++...+-....+.+..|..++..+  ||..+...+.+||
T Consensus       144 le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~  191 (207)
T 3bvo_A          144 LAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR  191 (207)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            33334444566666666666666778888999999  9999988887765

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=85.17  E-value=4.6  Score=27.35  Aligned_cols=51  Identities=8%  Similarity=0.154  Sum_probs=37.1

Q ss_pred             HHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824           30 LQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus        30 L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      |.+.....+.+-+..+....-......+..|..++..+  ||..+...+.+||
T Consensus       102 lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~  152 (171)
T 1fpo_A          102 LDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR  152 (171)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence            44444344555666666666666677788888999999  9999998888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	3e-29
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	4e-17
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	1e-13
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	1e-13
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	5e-11
d2ooca1	104	a.24.10.6 (A:8-111) Histidine phosphotransferase S	3e-04

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  100 bits (250), Expect = 3e-29
 Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 1/110 (0%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDE-SNPDFVAEVVSLFFADSERLLNDLT 61
              ++ +L     S+F +G++D QF QLQ LQDE   P FV+EVV+LF  D++R++N++ 
Sbjct: 2   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 61

Query: 62  RALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
             L+QP ++F  VD++VHQLKGSS+S+GA+++K  C+ FR FC++++ +G
Sbjct: 62  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDG 111

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.9 bits (168), Expect = 4e-17
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 10  LLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTI 69
           + E    L    +   +  +     DE+     +   +LF       +  L         
Sbjct: 1   MQEAVLQLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS-- 58

Query: 70  DFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           DF  +    H+LKG  + +     K  C    +   E+++ G
Sbjct: 59  DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPG 100

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 60.0 bits (145), Expect = 1e-13
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 20  EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVH 79
           E +LD     L+Q  +   P  + + +++F       ++ L   L     D K +    H
Sbjct: 4   EALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGH 59

Query: 80  QLKGSSSSIGAERIKNACVAFRNFCEEQNIEG 111
           ++KG++ S+G   ++      ++       + 
Sbjct: 60  KIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDN 91

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.9 bits (147), Expect = 1e-13
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 20  EGVLD-NQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHV 78
             +++     ++  + D+ + DF   ++  F   ++     + R LD    +   +D+  
Sbjct: 5   SEIINWTILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK-NLTELDNLG 62

Query: 79  HQLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
           H LKGSS+++G +RI   C   +N   +    
Sbjct: 63  HFLKGSSAALGLQRIAWVCERIQNLGRKMEHF 94

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 53.2 bits (127), Expect = 5e-11
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 20  EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVH 79
             VL+ Q  ++++L  E   D V  ++ +F  + +  +  LT            +    H
Sbjct: 3   TDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISH 58

Query: 80  QLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
            LK S++S GA+R+    +A     +   ++
Sbjct: 59  ALKSSAASFGADRLCERAIAIDKKAKANQLQ 89

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 38 NPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNAC 97
          +   V EV++LF   +      L                 VH +KG++  +GA  +   C
Sbjct: 15 DFAVVDEVLALFREQAALWAPMLDPTHPG-------WKDAVHTVKGAARGVGAFNLGEVC 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	99.93
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.8
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.8
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.79
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.71
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.7
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.1
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	99.08
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	94.11
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	81.54

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.93  E-value=2.4e-25  Score=150.24  Aligned_cols=107  Identities=44%  Similarity=0.847  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhhhhhcchhHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824            4 GQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQD-ESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~ld~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      ..|..++...+.+++++|++|.+|.++..|.+ +++|+|+.+++..|++++++.+..|+.++...+.||..+++.+|+||
T Consensus         3 ~~l~~~~~~~~~~~~~~g~lD~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~LK   82 (142)
T d1yvia1           3 AALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK   82 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHhcccccHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            47899999999999999999999999988886 57899999999999999999999999999753339999999999999


Q ss_pred             hhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033824           83 GSSSSIGAERIKNACVAFRNFCEEQNIE  110 (111)
Q Consensus        83 Gsa~~lGa~~L~~~~~~lE~~~~~gd~~  110 (111)
                      |||+++|+.+++.+|..||.+++.++++
T Consensus        83 Gss~~lGa~~l~~~~~~lE~~~~~~~~~  110 (142)
T d1yvia1          83 GSSASVGAQKVKFTCMQFRQFCQDKSRD  110 (142)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHhhccHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999865

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.1e-19  Score=125.18  Aligned_cols=90  Identities=20%  Similarity=0.404  Sum_probs=81.2

Q ss_pred             hhhhcchhH-HHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHHH
Q 033824           17 LFMEGVLDN-QFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALD-QPTIDFKMVDSHVHQLKGSSSSIGAERIK   94 (111)
Q Consensus        17 ~~~~~~ld~-~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGsa~~lGa~~L~   94 (111)
                      .+...++|. .|++|..|. +++++|+.+++..|++++++.+..|++++. .+  |+..+.+++|+|||||+++|+.++.
T Consensus         2 ~~p~~~id~~~l~~l~~m~-~~d~~f~~~li~~F~~~~~~~~~~l~~al~~~~--d~~~l~~~aH~lKgss~~~G~~~~~   78 (166)
T d2r25a1           2 TIPSEIINWTILNEIISMD-DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRIA   78 (166)
T ss_dssp             CCCSCSSCHHHHHHHHHTT-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCcccccCHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            345678885 488888885 578999999999999999999999999995 47  9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 033824           95 NACVAFRNFCEEQNI  109 (111)
Q Consensus        95 ~~~~~lE~~~~~gd~  109 (111)
                      ..|..||++++.++.
T Consensus        79 ~~~~~ie~~~~~~~~   93 (166)
T d2r25a1          79 WVCERIQNLGRKMEH   93 (166)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHccccc
Confidence            999999999997754

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.80  E-value=7.7e-21  Score=122.71  Aligned_cols=88  Identities=20%  Similarity=0.383  Sum_probs=79.0

Q ss_pred             hhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033824           19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACV   98 (111)
Q Consensus        19 ~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~   98 (111)
                      +.+++|.  ..|.+|.+..|++++.+++..|+++.++.+..|.+++..+  |++.+.+.+|+|||+|+++|+.+|+.+|.
T Consensus         2 ~~~lld~--~~l~~L~~~~G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~--d~~~l~~~aH~LKGsa~~~Ga~~L~~~~~   77 (114)
T d1y6da_           2 NTDVLNQ--QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI   77 (114)
T ss_dssp             CCTTTTT--THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             CHHHCCH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4567785  3555666656789999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHhhccC
Q 033824           99 AFRNFCEEQNIE  110 (111)
Q Consensus        99 ~lE~~~~~gd~~  110 (111)
                      .||.+++.++.+
T Consensus        78 ~lE~~~~~~~~~   89 (114)
T d1y6da_          78 AIDKKAKANQLQ   89 (114)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHcCChh
Confidence            999999998764

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=9.5e-20  Score=118.22  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=79.4

Q ss_pred             hhcchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 033824           19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACV   98 (111)
Q Consensus        19 ~~~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~   98 (111)
                      .++++|.  ..|.++.+..|++++.+++..|+++.++.+..|+.++..+  |++.+.+.+|+|||+|+++|+.+++.+|.
T Consensus         3 ~e~~lD~--~~L~~l~~~~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~--d~~~~~~~aH~LKgsa~~~G~~~l~~~~~   78 (118)
T d2a0ba_           3 SEALLDI--PMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQLGQ   78 (118)
T ss_dssp             HHHHSCH--HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCCH--HHHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4567775  3666667667899999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHHhhccC
Q 033824           99 AFRNFCEEQNIE  110 (111)
Q Consensus        99 ~lE~~~~~gd~~  110 (111)
                      .||.+++.++.+
T Consensus        79 ~lE~~~~~~~~~   90 (118)
T d2a0ba_          79 QIQSPDLPAWED   90 (118)
T ss_dssp             HHTCTTSTTHHH
T ss_pred             HHHHHHHcCCHH
Confidence            999999887653

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.6e-18  Score=112.68  Aligned_cols=70  Identities=17%  Similarity=0.263  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHHhhccC
Q 033824           39 PDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIE  110 (111)
Q Consensus        39 ~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~~gd~~  110 (111)
                      +.++.+++..|+++.|.++..|+.+++.+  ||..+++.||+|||+++++|+.+++.+|..||.+++.+|++
T Consensus        30 ~~~~~~~~~lF~~~~p~~l~~L~~a~~~~--D~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~~~~~~~~~   99 (116)
T d1sr2a_          30 QLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVP   99 (116)
T ss_dssp             HHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCCHH
Confidence            44778899999999999999999999999  99999999999999999999999999999999999999864

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.70  E-value=5.6e-18  Score=108.52  Aligned_cols=78  Identities=24%  Similarity=0.348  Sum_probs=68.3

Q ss_pred             cchhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHH
Q 033824           21 GVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAF  100 (111)
Q Consensus        21 ~~ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGsa~~lGa~~L~~~~~~l  100 (111)
                      |-||  |+.|.++.+ ||++++.+++..|+++.+..+..+     ..  |++.+++.+|+|||+|+|+|+.+|+++|..|
T Consensus         1 gaiD--~~~L~~~~g-gd~~l~~~ll~~F~e~~~~~~~~l-----~~--d~~~~~~~aH~LKGsa~~iGa~~L~~~a~~l   70 (104)
T d2ooca1           1 GAVD--FAYLEGFAA-GDFAVVDEVLALFREQAALWAPML-----DP--THPGWKDAVHTVKGAARGVGAFNLGEVCERC   70 (104)
T ss_dssp             CCSC--HHHHHHHTT-TCHHHHHHHHHHHHHHHHHHGGGC-----ST--TSTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccC--HHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHH-----cc--CHHHHHHHHHHHHhHHHHcCHHHHHHHHHHH
Confidence            3466  468888875 799999999999999999987554     45  8999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 033824          101 RNFCEEQN  108 (111)
Q Consensus       101 E~~~~~gd  108 (111)
                      |.+++.++
T Consensus        71 E~~~~~~~   78 (104)
T d2ooca1          71 EAGQESLE   78 (104)
T ss_dssp             HTTSSCHH
T ss_pred             HHHHHccC
Confidence            99988754

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=1.1e-10  Score=73.43  Aligned_cols=63  Identities=21%  Similarity=0.412  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033824           43 AEVVSLFFADSERLLNDLTRALDQ---PTID---FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE  105 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~  105 (111)
                      .+++..|++++.+.+..+...+..   .+.|   ...+.+.+|+|||+|+++|+..+..+|+.+|....
T Consensus         4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~   72 (105)
T d1tqga_           4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILD   72 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHH
Confidence            478999999999999999988721   2114   46788999999999999999999999999997643

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.08  E-value=2.3e-10  Score=74.13  Aligned_cols=63  Identities=19%  Similarity=0.391  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHH
Q 033824           43 AEVVSLFFADSERLLNDLTRAL---DQPTIDF---KMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE  105 (111)
Q Consensus        43 ~~ll~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGsa~~lGa~~L~~~~~~lE~~~~  105 (111)
                      .++++.|++++.+.+..+...+   ...+.|.   ..+.+.+|+|||+|+++|+..+..+|+.+|....
T Consensus         3 ~e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~   71 (128)
T d1i5na_           3 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD   71 (128)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHH
Confidence            4678999999999999999986   3332244   4888999999999999999999999999998754

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.15  Score=30.07  Aligned_cols=52  Identities=8%  Similarity=0.162  Sum_probs=43.0

Q ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 033824           29 QLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (111)
Q Consensus        29 ~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (111)
                      .|......++++-+..+....-......+..+..++..+  ||..+.....+||
T Consensus        25 ~lee~~~~~d~~~l~~l~~ei~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kLk   76 (95)
T d1fpoa2          25 ELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR   76 (95)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhH
Confidence            344444457888888888888888899999999999999  9999999888875

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.9  Score=24.93  Aligned_cols=40  Identities=20%  Similarity=0.439  Sum_probs=33.7

Q ss_pred             hhHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033824           23 LDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR   62 (111)
Q Consensus        23 ld~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~   62 (111)
                      +|..+++++.|....|..|+...++.|-.+.++.+..|-+
T Consensus         6 l~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe   45 (63)
T d2di0a1           6 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE   45 (63)
T ss_dssp             HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            3445789999999999999999999999999888876643