Citrus Sinensis ID: 033860


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD
cccccccccEEEEEEEcccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEccEEccEEEEEEEcHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHccc
cccccccccEEEEEEEEccHHHHHHHHHHHHHcccccEEEEEEEEEEEEEccccEEEEEEEEEEEEcccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHcccc
megnsktvpSIVVYVTVPNKEAGKKLAESIVKAKLAACVnrvpgiesvyewkgetdAEELLIIKTRQSLLETLTEHVkanheydvpevialpitggsqpylEWLKSSTRD
megnsktvpsivvyvtvpnkeagKKLAESIVKAKLAACVNRVPGIESvyewkgetdaEELLIIKTRQSLLETLTEHVKANHEYDVPEVialpitggsqpylewlksstrd
MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD
*********SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWL******
************VYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST**
MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD
*****KTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSS***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGETDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query110 2.2.26 [Sep-21-2011]
P93009182 Protein CutA, chloroplast yes no 1.0 0.604 0.830 4e-47
Q109R6177 Protein CutA 1, chloropla yes no 1.0 0.621 0.794 5e-44
O60888179 Protein CutA OS=Homo sapi no no 0.863 0.530 0.494 5e-23
Q6MGD0177 Protein CutA OS=Rattus no yes no 0.881 0.548 0.494 9e-23
Q9CQ89177 Protein CutA OS=Mus muscu no no 0.881 0.548 0.494 1e-22
Q66KY3151 Protein CutA homolog OS=X N/A no 0.827 0.602 0.548 3e-22
P69678176 Protein CutA OS=Bos tauru no no 0.854 0.534 0.494 1e-21
Q7SIA8103 Divalent-cation tolerance yes no 0.881 0.941 0.484 2e-21
Q6D9J5110 Divalent-cation tolerance yes no 0.909 0.909 0.392 8e-19
Q7T3C3150 Protein CutA homolog OS=D yes no 0.9 0.66 0.396 1e-17
>sp|P93009|CUTA_ARATH Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1 Back     alignment and function desciption
 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 102/112 (91%), Gaps = 2/112 (1%)

Query: 1   MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKG--ETDAE 58
           ME +SKTVPSIVVYVTVPN+EAGKKLA SIV+ KLAACVN VPGIESVYEW+G  ++D+E
Sbjct: 71  MEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSE 130

Query: 59  ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 110
           ELLIIKTRQSLLE LTEHV ANHEYDVPEVIALPITGGS  YLEWLK+STR+
Sbjct: 131 ELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTRN 182




Involved in metal homeostasis. Specifically binds Cu(2+). The truncated isoform has less specificity in metal binding.
Arabidopsis thaliana (taxid: 3702)
>sp|Q109R6|CUTA1_ORYSJ Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CUTA1 PE=1 SV=1 Back     alignment and function description
>sp|O60888|CUTA_HUMAN Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2 Back     alignment and function description
>sp|Q6MGD0|CUTA_RAT Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=2 Back     alignment and function description
>sp|Q9CQ89|CUTA_MOUSE Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3 Back     alignment and function description
>sp|Q66KY3|CUTA_XENLA Protein CutA homolog OS=Xenopus laevis GN=cuta PE=2 SV=2 Back     alignment and function description
>sp|P69678|CUTA_BOVIN Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1 Back     alignment and function description
>sp|Q7SIA8|CUTA_THET8 Divalent-cation tolerance protein CutA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=cutA PE=1 SV=1 Back     alignment and function description
>sp|Q6D9J5|CUTA_ERWCT Divalent-cation tolerance protein CutA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=cutA PE=3 SV=2 Back     alignment and function description
>sp|Q7T3C3|CUTA_DANRE Protein CutA homolog OS=Danio rerio GN=cuta PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query110
224063297192 predicted protein [Populus trichocarpa] 1.0 0.572 0.857 2e-48
118482909163 unknown [Populus trichocarpa] 1.0 0.674 0.857 5e-48
225459136189 PREDICTED: protein CutA, chloroplastic [ 1.0 0.582 0.857 1e-47
302142034160 unnamed protein product [Vitis vinifera] 1.0 0.687 0.857 1e-47
358249004173 uncharacterized protein LOC100792337 [Gl 1.0 0.635 0.839 4e-47
358248698112 uncharacterized protein LOC100819511 [Gl 1.0 0.982 0.839 8e-47
388495848182 unknown [Medicago truncatula] 1.0 0.604 0.824 3e-46
388498196146 unknown [Lotus japonicus] 1.0 0.753 0.842 4e-46
357465321177 Protein CutA [Medicago truncatula] gi|35 1.0 0.621 0.824 5e-46
297823171182 predicted protein [Arabidopsis lyrata su 0.990 0.598 0.828 2e-45
>gi|224063297|ref|XP_002301083.1| predicted protein [Populus trichocarpa] gi|222842809|gb|EEE80356.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/112 (85%), Positives = 103/112 (91%), Gaps = 2/112 (1%)

Query: 1   MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAE 58
           MEGNS TVPSIVVYVTVPN+EAGKKLA SIVK KLAACVN VPGIESVY+W+GE  +DAE
Sbjct: 81  MEGNSDTVPSIVVYVTVPNREAGKKLANSIVKEKLAACVNIVPGIESVYQWQGEIQSDAE 140

Query: 59  ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 110
           ELLIIKTRQSLLE LTEHVKANHEY+VPEVI+LPITGGS PYL+WLK STRD
Sbjct: 141 ELLIIKTRQSLLEALTEHVKANHEYEVPEVISLPITGGSIPYLKWLKDSTRD 192




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482909|gb|ABK93368.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225459136|ref|XP_002285702.1| PREDICTED: protein CutA, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142034|emb|CBI19237.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|358249004|ref|NP_001239721.1| uncharacterized protein LOC100792337 [Glycine max] gi|255646799|gb|ACU23871.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|358248698|ref|NP_001239925.1| uncharacterized protein LOC100819511 [Glycine max] gi|255636727|gb|ACU18699.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388495848|gb|AFK35990.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388498196|gb|AFK37164.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357465321|ref|XP_003602942.1| Protein CutA [Medicago truncatula] gi|355491990|gb|AES73193.1| Protein CutA [Medicago truncatula] Back     alignment and taxonomy information
>gi|297823171|ref|XP_002879468.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325307|gb|EFH55727.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query110
TAIR|locus:2057651182 CUTA [Arabidopsis thaliana (ta 1.0 0.604 0.830 3.9e-44
UNIPROTKB|Q109R6177 CUTA1 "Protein CutA 1, chlorop 1.0 0.621 0.794 5.2e-42
GENEDB_PFALCIPARUM|PFL2375c159 PFL2375c "cutA, putative" [Pla 0.918 0.635 0.485 8.7e-24
UNIPROTKB|Q8I4T9159 PFL2375c "CutA, putative" [Pla 0.918 0.635 0.485 8.7e-24
FB|FBgn0030545198 CG11590 [Drosophila melanogast 0.927 0.515 0.504 1.4e-23
UNIPROTKB|F1MTI7154 CUTA "Protein CutA" [Bos tauru 0.945 0.675 0.490 1.4e-23
UNIPROTKB|F1N5T0177 CUTA "Protein CutA" [Bos tauru 0.945 0.587 0.490 1.4e-23
UNIPROTKB|O60888179 CUTA "Protein CutA" [Homo sapi 0.972 0.597 0.468 2.9e-23
UNIPROTKB|F1RZR6177 CUTA "Uncharacterized protein" 0.945 0.587 0.481 2.9e-23
MGI|MGI:1914925177 Cuta "cutA divalent cation tol 0.918 0.570 0.495 4.8e-23
TAIR|locus:2057651 CUTA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 93/112 (83%), Positives = 102/112 (91%)

Query:     1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKG--ETDAE 58
             ME +SKTVPSIVVYVTVPN+EAGKKLA SIV+ KLAACVN VPGIESVYEW+G  ++D+E
Sbjct:    71 MEESSKTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSE 130

Query:    59 ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 110
             ELLIIKTRQSLLE LTEHV ANHEYDVPEVIALPITGGS  YLEWLK+STR+
Sbjct:   131 ELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTRN 182




GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0010038 "response to metal ion" evidence=IEA
GO:0005507 "copper ion binding" evidence=IDA
GO:0048573 "photoperiodism, flowering" evidence=RCA
UNIPROTKB|Q109R6 CUTA1 "Protein CutA 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFL2375c PFL2375c "cutA, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I4T9 PFL2375c "CutA, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
FB|FBgn0030545 CG11590 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MTI7 CUTA "Protein CutA" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5T0 CUTA "Protein CutA" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O60888 CUTA "Protein CutA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZR6 CUTA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1914925 Cuta "cutA divalent cation tolerance homolog (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8A7N3CUTA_ECOHSNo assigned EC number0.37830.99090.9732yesno
B7MKU2CUTA_ECO45No assigned EC number0.37830.99090.9732yesno
P93009CUTA_ARATHNo assigned EC number0.83031.00.6043yesno
Q7SIA8CUTA_THET8No assigned EC number0.48480.88180.9417yesno
B1JMR6CUTA_YERPYNo assigned EC number0.370.89090.8235yesno
B4TSC0CUTA_SALSVNo assigned EC number0.38230.90900.8695yesno
B1ITR1CUTA_ECOLCNo assigned EC number0.37830.99090.9732yesno
B1LQF8CUTA_ECOSMNo assigned EC number0.37830.99090.9732yesno
B4TF74CUTA_SALHSNo assigned EC number0.38230.90900.8695yesno
A7ZV06CUTA_ECO24No assigned EC number0.37830.99090.9732yesno
B7M8P8CUTA_ECO8ANo assigned EC number0.37830.99090.9732yesno
B5FRJ6CUTA_SALDCNo assigned EC number0.38230.90900.8695yesno
B2TY12CUTA_SHIB3No assigned EC number0.37830.99090.9732yesno
C5A1C9CUTA_ECOBWNo assigned EC number0.37830.99090.9732yesno
B7LBZ6CUTA_ECO55No assigned EC number0.37830.99090.9732yesno
B6I609CUTA_ECOSENo assigned EC number0.37830.99090.9732yesno
B5QZZ9CUTA_SALEPNo assigned EC number0.38230.90900.8695yesno
B5Z2E7CUTA_ECO5ENo assigned EC number0.37830.99090.9732yesno
Q57GQ4CUTA_SALCHNo assigned EC number0.38230.90900.8695yesno
Q109R6CUTA1_ORYSJNo assigned EC number0.79461.00.6214yesno
Q8FAM7CUTA_ECOL6No assigned EC number0.37830.99090.9732yesno
B4T2N5CUTA_SALNSNo assigned EC number0.38230.90900.8695yesno
Q3YUK3CUTA_SHISSNo assigned EC number0.37830.99090.9732yesno
Q5PL69CUTA_SALPANo assigned EC number0.38230.90900.8695yesno
B1XD17CUTA_ECODHNo assigned EC number0.37830.99090.9732yesno
Q5CX58CUTA_CRYPINo assigned EC number0.33660.90.8461yesno
B5BKE7CUTA_SALPKNo assigned EC number0.38230.90900.8695yesno
Q7CPA2CUTA_SALTYNo assigned EC number0.38230.90900.8695yesno
Q328D1CUTA_SHIDSNo assigned EC number0.37830.99090.9732yesno
B5F2K4CUTA_SALA4No assigned EC number0.38230.90900.8695yesno
Q0SXE2CUTA_SHIF8No assigned EC number0.37830.99090.9732yesno
Q0T9Q4CUTA_ECOL5No assigned EC number0.37830.99090.9732yesno
B7NG75CUTA_ECOLUNo assigned EC number0.37830.99090.9732yesno
Q83P43CUTA_SHIFLNo assigned EC number0.37830.99090.9732yesno
B7MSF8CUTA_ECO81No assigned EC number0.36930.99090.9732yesno
B5R985CUTA_SALG2No assigned EC number0.38230.90900.8695yesno
Q66FE0CUTA_YERPSNo assigned EC number0.370.89090.8235yesno
Q6D9J5CUTA_ERWCTNo assigned EC number0.39210.90900.9090yesno
B7NTJ6CUTA_ECO7INo assigned EC number0.37830.99090.9732yesno
A8AMR3CUTA_CITK8No assigned EC number0.36840.99090.9478yesno
Q1R3C3CUTA_ECOUTNo assigned EC number0.37830.99090.9732yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query110
pfam03091102 pfam03091, CutA1, CutA1 divalent ion tolerance pro 2e-42
COG1324104 COG1324, CutA, Uncharacterized protein involved in 1e-32
PRK10645112 PRK10645, PRK10645, divalent-cation tolerance prot 3e-24
>gnl|CDD|202531 pfam03091, CutA1, CutA1 divalent ion tolerance protein Back     alignment and domain information
 Score =  133 bits (338), Expect = 2e-42
 Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 2/102 (1%)

Query: 10  SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKG--ETDAEELLIIKTRQ 67
           SIVV VT P++E+ +KLA  +V+ +LAACVN VPGI+S+Y W+G  E D+E LLIIKT  
Sbjct: 1   SIVVLVTAPDEESAEKLARKLVEERLAACVNIVPGIKSIYWWEGKIEEDSEVLLIIKTSS 60

Query: 68  SLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 109
                L E VK  H Y+VPE+IALPI  G+  YL WL  S +
Sbjct: 61  EKFPALEERVKELHPYEVPEIIALPIENGNPDYLNWLDQSVK 102


Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognised structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila). Length = 102

>gnl|CDD|224243 COG1324, CutA, Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182614 PRK10645, PRK10645, divalent-cation tolerance protein CutA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 110
PRK10645112 divalent-cation tolerance protein CutA; Provisiona 100.0
COG1324104 CutA Uncharacterized protein involved in tolerance 100.0
PF03091102 CutA1: CutA1 divalent ion tolerance protein; Inter 100.0
KOG3338153 consensus Divalent cation tolerance-related protei 100.0
COG3323109 Uncharacterized protein conserved in bacteria [Fun 97.88
smart0004977 DEP Domain found in Dishevelled, Egl-10, and Pleck 90.24
cd0445088 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Plecks 83.41
>PRK10645 divalent-cation tolerance protein CutA; Provisional Back     alignment and domain information
Probab=100.00  E-value=6.9e-48  Score=269.51  Aligned_cols=108  Identities=37%  Similarity=0.717  Sum_probs=103.1

Q ss_pred             CCCCCCCCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHH
Q 033860            2 EGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKA   79 (110)
Q Consensus         2 ~~~~~~~~~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~   79 (110)
                      .++|++..+++|+||+||.++|++||+.||++||||||||+|+|+|+|+|+|+  +++|+.|+|||+.+++++|.++|++
T Consensus         3 ~~~~~~~~~~lV~tT~p~~e~A~~ia~~Lve~rLaACvni~p~i~S~Y~W~G~i~~~~E~~l~iKT~~~~~~~l~~~I~~   82 (112)
T PRK10645          3 DEKSSNTDAVVVLCTAPDEATAQDLAAKVLAEKLAACVTLLPGATSLYYWEGKLEQEYEVQMLLKTTVSHQQALLECLKS   82 (112)
T ss_pred             cccCCCCCEEEEEEeCCCHHHHHHHHHHHHHCCeeEEEecCCCeeEEEEECCEEeeeeEEEEEEEeCHHHHHHHHHHHHH
Confidence            35677667899999999999999999999999999999999999999999999  8999999999999999999999999


Q ss_pred             hCCCccceEEEEeCCCCCHhHHHHHHhhcC
Q 033860           80 NHEYDVPEVIALPITGGSQPYLEWLKSSTR  109 (110)
Q Consensus        80 ~HpYevPeIi~~~i~~~~~~Yl~Wi~~~~~  109 (110)
                      +||||+|||+++|+.+|+++|++|+.++++
T Consensus        83 ~HpYevPeIi~~~i~~g~~~Yl~Wi~~~~~  112 (112)
T PRK10645         83 HHPYQTPELLVLPVTHGDTDYLSWLNASLR  112 (112)
T ss_pred             hCCCCCCEEEEEEcccCCHHHHHHHHHhcC
Confidence            999999999999999999999999999874



>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species [] Back     alignment and domain information
>KOG3338 consensus Divalent cation tolerance-related protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin Back     alignment and domain information
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query110
2zom_A113 Crystal Structure Of Cuta1 From Oryza Sativa Length 5e-45
2zfh_A179 Crystal Structure Of Putative Cuta1 From Homo Sapie 4e-24
1xk8_A147 Divalent Cation Tolerant Protein Cuta From Homo Sap 5e-24
1osc_A126 Crystal Structure Of Rat Cuta1 At 2.15 A Resolution 7e-24
1nza_A103 Divalent Cation Tolerance Protein (Cut A1) From The 1e-22
3aa9_A112 Crystal Structure Analysis Of The Mutant Cuta1 (E61 8e-18
1naq_A112 Crystal Structure Of Cuta1 From E.Coli At 1.7 A Res 8e-18
3aa8_A112 Crystal Structure Analysis Of The Mutant Cuta1 (S11 4e-17
3ah6_A112 Remarkable Improvement Of The Heat Stability Of Cut 4e-17
4e98_A138 Crystal Structure Of Possible Cuta1 Divalent Ion To 6e-17
3opk_A118 Crystal Structure Of Divalent-Cation Tolerance Prot 1e-16
3gsd_A122 2.05 Angstrom Structure Of A Divalent-cation Tolera 8e-16
1p1l_A102 Structure Of The Periplasmic Divalent Cation Tolera 3e-14
3ahp_A108 Crystal Structure Of Stable Protein, Cuta1, From A 4e-14
2e66_A102 Crystal Structure Of Cuta1 From Pyrococcus Horikosh 5e-14
1uku_A102 Crystal Structure Of Pyrococcus Horikoshii Cuta1 Co 6e-14
1j2v_A102 Crystal Structure Of Cuta1 From Pyrococcus Horikosh 3e-13
1v99_A102 Crystal Structure Of The Periplasmic Divalent Catio 1e-12
4iyq_A127 Crystal Structure Of Divalent Ion Tolerance Protein 1e-11
2nuh_A118 Crystal Structure Of Cuta From The Phytopathgen Bac 5e-11
1vhf_A113 Crystal Structure Of Periplasmic Divalent Cation To 8e-08
1o5j_A113 Crystal Structure Of Periplasmic Divalent Cation To 9e-08
1kr4_A125 Structure Genomics, Protein Tm1056, Cuta Length = 1 9e-08
>pdb|2ZOM|A Chain A, Crystal Structure Of Cuta1 From Oryza Sativa Length = 113 Back     alignment and structure

Iteration: 1

Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 89/112 (79%), Positives = 98/112 (87%), Gaps = 2/112 (1%) Query: 1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKG--ETDAE 58 ME S TVPSIVVYVTVPNKEAGK+LA SI+ KLAACVN VPGIESVY W+G +TDAE Sbjct: 1 MESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAE 60 Query: 59 ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 110 ELLIIKTR+SLL+ LTEHVKANHEYDVPEVIALPI GG+ YLEWLK+STR+ Sbjct: 61 ELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 112
>pdb|2ZFH|A Chain A, Crystal Structure Of Putative Cuta1 From Homo Sapiens At 2.05a Resolution Length = 179 Back     alignment and structure
>pdb|1XK8|A Chain A, Divalent Cation Tolerant Protein Cuta From Homo Sapiens O60888 Length = 147 Back     alignment and structure
>pdb|1OSC|A Chain A, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution Length = 126 Back     alignment and structure
>pdb|1NZA|A Chain A, Divalent Cation Tolerance Protein (Cut A1) From Thermus Thermophilus Hb8 Length = 103 Back     alignment and structure
>pdb|3AA9|A Chain A, Crystal Structure Analysis Of The Mutant Cuta1 (E61v) From E. Coli Length = 112 Back     alignment and structure
>pdb|1NAQ|A Chain A, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution Length = 112 Back     alignment and structure
>pdb|3AA8|A Chain A, Crystal Structure Analysis Of The Mutant Cuta1 (S11vE61V) FROM E. Coli Length = 112 Back     alignment and structure
>pdb|3AH6|A Chain A, Remarkable Improvement Of The Heat Stability Of Cuta1 From E.Coli By Rational Protein Designing Length = 112 Back     alignment and structure
>pdb|4E98|A Chain A, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance Protein From Cryptosporidium Parvum Iowa Ii Length = 138 Back     alignment and structure
>pdb|3OPK|A Chain A, Crystal Structure Of Divalent-Cation Tolerance Protein Cuta From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 118 Back     alignment and structure
>pdb|3GSD|A Chain A, 2.05 Angstrom Structure Of A Divalent-cation Tolerance Protein (cuta) From Yersinia Pestis Length = 122 Back     alignment and structure
>pdb|1P1L|A Chain A, Structure Of The Periplasmic Divalent Cation Tolerance Protein Cuta From Archaeoglobus Fulgidus Length = 102 Back     alignment and structure
>pdb|3AHP|A Chain A, Crystal Structure Of Stable Protein, Cuta1, From A Psychrotrophic Bacterium Shewanella Sp. Sib1 Length = 108 Back     alignment and structure
>pdb|2E66|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3, Mutation D60a Length = 102 Back     alignment and structure
>pdb|1UKU|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed With Cu2+ Length = 102 Back     alignment and structure
>pdb|1J2V|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Length = 102 Back     alignment and structure
>pdb|1V99|A Chain A, Crystal Structure Of The Periplasmic Divalent Cation Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In The Presence Of Cucl2 Length = 102 Back     alignment and structure
>pdb|4IYQ|A Chain A, Crystal Structure Of Divalent Ion Tolerance Protein Cuta1 From Ehrlichia Chaffeensis Length = 127 Back     alignment and structure
>pdb|2NUH|A Chain A, Crystal Structure Of Cuta From The Phytopathgen Bacterium Xylella Fastidiosa Length = 118 Back     alignment and structure
>pdb|1VHF|A Chain A, Crystal Structure Of Periplasmic Divalent Cation Tolerance Protein Length = 113 Back     alignment and structure
>pdb|1O5J|A Chain A, Crystal Structure Of Periplasmic Divalent Cation Tolerance Protein (Tm1056) From Thermotoga Maritima At 1.95 A Resolution Length = 113 Back     alignment and structure
>pdb|1KR4|A Chain A, Structure Genomics, Protein Tm1056, Cuta Length = 125 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query110
2zom_A113 CUTA1, protein CUTA, chloroplast, putative, expres 1e-41
1naq_A112 Periplasmic divalent cation tolerance protein CUTA 2e-41
1nza_A103 CUTA, divalent cation tolerance protein; cellular 1e-39
4e98_A138 CUTA1 divalent ION tolerance protein; ssgcid, stru 2e-39
2nuh_A118 Periplasmic divalent cation tolerance protein; CUT 7e-39
3gsd_A122 Divalent-cation tolerance protein CUTA; IDP00456, 3e-38
1vhf_A113 Periplasmic divalent cation tolerance protein; str 5e-37
1kr4_A125 Protein TM1056, CUTA; structural genomics, PSI, pr 1e-36
3ahp_A108 CUTA1; thermostable protein, electron transport; 2 4e-36
2zfh_A179 CUTA; human brain, trimeric structure, structural 4e-36
1osc_A126 Similar to divalent cation tolerant protein CUTA; 8e-36
1o5j_A113 Periplasmic divalent cation tolerance protein; TM1 2e-35
1p1l_A102 CUTA, periplasmic divalent cation tolerance protei 3e-34
1uku_A102 CUTA1, periplasmic divalent cation tolerance prote 5e-33
>2zom_A CUTA1, protein CUTA, chloroplast, putative, expressed; trimeric structure, protein stability, unknown function; 3.02A {Oryza sativa subsp} Length = 113 Back     alignment and structure
 Score =  131 bits (332), Expect = 1e-41
 Identities = 89/112 (79%), Positives = 98/112 (87%), Gaps = 2/112 (1%)

Query: 1   MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKG--ETDAE 58
           ME  S TVPSIVVYVTVPNKEAGK+LA SI+  KLAACVN VPGIESVY W+G  +TDAE
Sbjct: 1   MESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAE 60

Query: 59  ELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 110
           ELLIIKTR+SLL+ LTEHVKANHEYDVPEVIALPI GG+  YLEWLK+STR+
Sbjct: 61  ELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 112


>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A Length = 112 Back     alignment and structure
>1nza_A CUTA, divalent cation tolerance protein; cellular tolerance, monomer, structural genomics, RIKE structural genomics/proteomics initiative; 1.70A {Thermus thermophilus} SCOP: d.58.5.2 PDB: 1v6h_A Length = 103 Back     alignment and structure
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum} Length = 138 Back     alignment and structure
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa} Length = 118 Back     alignment and structure
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} Length = 122 Back     alignment and structure
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2 Length = 113 Back     alignment and structure
>1kr4_A Protein TM1056, CUTA; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.40A {Thermotoga maritima} SCOP: d.58.5.2 Length = 125 Back     alignment and structure
>3ahp_A CUTA1; thermostable protein, electron transport; 2.70A {Shewanella} Length = 108 Back     alignment and structure
>2zfh_A CUTA; human brain, trimeric structure, structural genomics; 2.05A {Homo sapiens} SCOP: d.58.5.2 PDB: 1xk8_A Length = 179 Back     alignment and structure
>1osc_A Similar to divalent cation tolerant protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; 2.15A {Rattus norvegicus} SCOP: d.58.5.2 Length = 126 Back     alignment and structure
>1o5j_A Periplasmic divalent cation tolerance protein; TM1056, struc genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.5.2 Length = 113 Back     alignment and structure
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC, PSI, protein structure initiative; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.5.2 Length = 102 Back     alignment and structure
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A Length = 102 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query110
2zom_A113 CUTA1, protein CUTA, chloroplast, putative, expres 100.0
3ahp_A108 CUTA1; thermostable protein, electron transport; 2 100.0
4e98_A138 CUTA1 divalent ION tolerance protein; ssgcid, stru 100.0
1nza_A103 CUTA, divalent cation tolerance protein; cellular 100.0
1naq_A112 Periplasmic divalent cation tolerance protein CUTA 100.0
1vhf_A113 Periplasmic divalent cation tolerance protein; str 100.0
2nuh_A118 Periplasmic divalent cation tolerance protein; CUT 100.0
3gsd_A122 Divalent-cation tolerance protein CUTA; IDP00456, 100.0
1uku_A102 CUTA1, periplasmic divalent cation tolerance prote 100.0
1p1l_A102 CUTA, periplasmic divalent cation tolerance protei 100.0
1kr4_A125 Protein TM1056, CUTA; structural genomics, PSI, pr 100.0
1o5j_A113 Periplasmic divalent cation tolerance protein; TM1 100.0
1osc_A126 Similar to divalent cation tolerant protein CUTA; 100.0
2zfh_A179 CUTA; human brain, trimeric structure, structural 100.0
2gx8_A 397 NIF3-related protein; structural genomics, unknown 93.62
2nyd_A 370 UPF0135 protein SA1388; hypothetical protein SA138 87.62
>2zom_A CUTA1, protein CUTA, chloroplast, putative, expressed; trimeric structure, protein stability, unknown function; 3.02A {Oryza sativa subsp} Back     alignment and structure
Probab=100.00  E-value=3.8e-49  Score=275.18  Aligned_cols=110  Identities=81%  Similarity=1.210  Sum_probs=102.7

Q ss_pred             CCCCCCCCCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHH
Q 033860            1 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVK   78 (110)
Q Consensus         1 ~~~~~~~~~~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~   78 (110)
                      |+++++..++++|+||+||.++|++|||.||++|||||||++|+|+|+|+|+|+  +++|++|+|||+.+++++|.++|+
T Consensus         1 ~~~~~~~~~~~~V~tT~p~~e~A~~iA~~Lve~rLAACvni~p~i~S~Y~W~G~ie~~~E~~l~iKT~~~~~~~l~~~I~   80 (113)
T 2zom_A            1 MESTSTTVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVK   80 (113)
T ss_dssp             ----CCSCCEEEEEEEESSHHHHHHHHHHHHHTTSCSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             CCCcCCCCCEEEEEEecCCHHHHHHHHHHHHhcCeEEEEEecCCccEEEEeCCEEeEeeEEEEEEEECHHHHHHHHHHHH
Confidence            788888778999999999999999999999999999999999889999999999  999999999999999999999999


Q ss_pred             HhCCCccceEEEEeCCCCCHhHHHHHHhhcCC
Q 033860           79 ANHEYDVPEVIALPITGGSQPYLEWLKSSTRD  110 (110)
Q Consensus        79 ~~HpYevPeIi~~~i~~~~~~Yl~Wi~~~~~~  110 (110)
                      ++||||+|||+++|+.+|+++|++||.+++++
T Consensus        81 ~~HpYevPeIi~lpi~~g~~~Yl~Wi~~~~~~  112 (113)
T 2zom_A           81 ANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE  112 (113)
T ss_dssp             HTCSSSSCCCEEEECCCCCHHHHHHHHHHCC-
T ss_pred             HHCCCcCCEEEEEEccCCCHHHHHHHHHHccC
Confidence            99999999999999999999999999999863



>3ahp_A CUTA1; thermostable protein, electron transport; 2.70A {Shewanella} Back     alignment and structure
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum} Back     alignment and structure
>1nza_A CUTA, divalent cation tolerance protein; cellular tolerance, monomer, structural genomics, RIKE structural genomics/proteomics initiative; 1.70A {Thermus thermophilus} SCOP: d.58.5.2 PDB: 1v6h_A Back     alignment and structure
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; HET: MBO; 1.70A {Escherichia coli} SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A Back     alignment and structure
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2 Back     alignment and structure
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa} Back     alignment and structure
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2 Back     alignment and structure
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A Back     alignment and structure
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC, PSI, protein structure initiative; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.5.2 Back     alignment and structure
>1kr4_A Protein TM1056, CUTA; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.40A {Thermotoga maritima} SCOP: d.58.5.2 Back     alignment and structure
>1o5j_A Periplasmic divalent cation tolerance protein; TM1056, struc genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.5.2 Back     alignment and structure
>1osc_A Similar to divalent cation tolerant protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; 2.15A {Rattus norvegicus} SCOP: d.58.5.2 Back     alignment and structure
>2zfh_A CUTA; human brain, trimeric structure, structural genomics; 2.05A {Homo sapiens} SCOP: d.58.5.2 PDB: 1xk8_A Back     alignment and structure
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1 Back     alignment and structure
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 110
d1naqa_106 d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562 4e-40
d1nzaa_103 d.58.5.2 (A:) Cut A1 {Thermus thermophilus [TaxId: 8e-40
d2zfha1107 d.58.5.2 (A:63-169) Mammalian CutA-like protein {H 4e-39
d1ukua_102 d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikosh 6e-36
d1p1la_102 d.58.5.2 (A:) Cut A1 {Archaeon Archaeoglobus fulgi 9e-35
d1kr4a_110 d.58.5.2 (A:) Hypothetical protein TM1056 {Thermot 2e-34
>d1naqa_ d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GlnB-like
family: Divalent ion tolerance proteins CutA (CutA1)
domain: Cut A1
species: Escherichia coli [TaxId: 562]
 Score =  126 bits (319), Expect = 4e-40
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 2/102 (1%)

Query: 10  SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKG--ETDAEELLIIKTRQ 67
           S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G  E + E  +I+KT  
Sbjct: 5   SVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTV 64

Query: 68  SLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 109
           S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct: 65  SHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 106


>d1nzaa_ d.58.5.2 (A:) Cut A1 {Thermus thermophilus [TaxId: 274]} Length = 103 Back     information, alignment and structure
>d2zfha1 d.58.5.2 (A:63-169) Mammalian CutA-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 102 Back     information, alignment and structure
>d1p1la_ d.58.5.2 (A:) Cut A1 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 102 Back     information, alignment and structure
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga maritima [TaxId: 2336]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query110
d1naqa_106 Cut A1 {Escherichia coli [TaxId: 562]} 100.0
d1nzaa_103 Cut A1 {Thermus thermophilus [TaxId: 274]} 100.0
d2zfha1107 Mammalian CutA-like protein {Human (Homo sapiens) 100.0
d1ukua_102 Cut A1 {Archaeon Pyrococcus horikoshii [TaxId: 539 100.0
d1p1la_102 Cut A1 {Archaeon Archaeoglobus fulgidus [TaxId: 22 100.0
d1kr4a_110 Hypothetical protein TM1056 {Thermotoga maritima [ 100.0
d2gx8a1 370 Nif3-related protein BC4286 {Bacillus cereus [TaxI 89.74
d2csoa1115 Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} 84.27
>d1naqa_ d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GlnB-like
family: Divalent ion tolerance proteins CutA (CutA1)
domain: Cut A1
species: Escherichia coli [TaxId: 562]
Probab=100.00  E-value=3.4e-46  Score=255.88  Aligned_cols=102  Identities=39%  Similarity=0.746  Sum_probs=99.1

Q ss_pred             CCeEEEEEeCCCHHHHHHHHHHHHhccccceEeecCCceEEEEecCC--CCceeEEEeeeccchHHHHHHHHHHhCCCcc
Q 033860            8 VPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGE--TDAEELLIIKTRQSLLETLTEHVKANHEYDV   85 (110)
Q Consensus         8 ~~~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~v~S~Y~W~G~--~~~E~~l~~KT~~~~~~~l~~~I~~~HpYev   85 (110)
                      ...++|+||+||.++|++||+.||++|||||+||+|+|+|+|+|+|+  +++|+.|+|||+.+++++|.++|+++||||+
T Consensus         3 t~~i~V~tT~p~~~~A~~ia~~ll~~kLaACvni~~~i~S~Y~W~g~i~~~~E~~l~iKT~~~~~~~l~~~i~~~HpYev   82 (106)
T d1naqa_           3 TASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQT   82 (106)
T ss_dssp             CCEEEEEEEESSHHHHHHHHHHHHHTTSCSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSTTSC
T ss_pred             ceEEEEEEcCCCHHHHHHHHHHHHHcCeEEEEeccCCeEEEEEECCEEEEeeEEEEEeeccHHHHHHHHHHHHhcCCCCC
Confidence            34799999999999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             ceEEEEeCCCCCHhHHHHHHhhcC
Q 033860           86 PEVIALPITGGSQPYLEWLKSSTR  109 (110)
Q Consensus        86 PeIi~~~i~~~~~~Yl~Wi~~~~~  109 (110)
                      |||+.+|+.+|+++|++|+.++++
T Consensus        83 PeIi~~~~~~~~~~Y~~Wv~~~~r  106 (106)
T d1naqa_          83 PELLVLPVTHGDTDYLSWLNASLR  106 (106)
T ss_dssp             CCEEEEECCBCCHHHHHHHHHHTC
T ss_pred             CEEEEEEcccCCHHHHHHHHHhcC
Confidence            999999999999999999999875



>d1nzaa_ d.58.5.2 (A:) Cut A1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zfha1 d.58.5.2 (A:63-169) Mammalian CutA-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1p1la_ d.58.5.2 (A:) Cut A1 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure