Citrus Sinensis ID: 033888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MASSSTPSSAGSTAQNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEES
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
massstpssagstaqnpkrsLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIkhsllheasleptGLFASRLRHLFGEES
Flexible Loop (DISEMBL)
massstpssagstaqnpkRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLheasleptglFASRLRHLFGEES
Low Complexity Region (SEG)
MassstpssagstaQNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEES
Disordered region (IsUnstruct)
*********************GFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHD**************************************************
Disordered Region (DISOPRED)
*************************NAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQ*************TNRMNNIKHSLL*********LFASRLRHLFG***
Disordered Region (DISEMBL)
****************PKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEES
Disordered Region (DISPRO)
******************RSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASR*RHLFG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSTPSSAGSTAQNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRxxxxxxxxxxxxxxxxxxxxxMNNIKHSLLHEASLEPTGLFASRLRHLFGEES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
255539132	108	conserved hypothetical protein [Ricinus	0.990	1.0	0.724	1e-38
224061927	106	predicted protein [Populus trichocarpa]	0.862	0.886	0.776	1e-35
449485145	108	PREDICTED: uncharacterized protein LOC10	0.954	0.962	0.701	1e-31
302141686	631	unnamed protein product [Vitis vinifera]	0.862	0.148	0.718	2e-31
225459810	110	PREDICTED: uncharacterized protein LOC10	0.862	0.854	0.718	3e-31
147859188	111	hypothetical protein VITISV_013558 [Viti	0.862	0.846	0.718	3e-31
297850458	116	hypothetical protein ARALYDRAFT_472271 [	0.990	0.931	0.596	2e-30
356517556	109	PREDICTED: uncharacterized protein LOC10	0.862	0.862	0.691	3e-29
18394861	116	uncharacterized protein [Arabidopsis tha	0.990	0.931	0.578	9e-29
351722049	109	uncharacterized protein LOC100306672 [Gl	0.862	0.862	0.648	7e-27

>gi|255539132|ref|XP_002510631.1| conserved hypothetical protein [Ricinus communis] gi|223551332|gb|EEF52818.1| conserved hypothetical protein [Ricinus communis]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 94/109 (86%), Gaps = 1/109 (0%)

Query: 1   MASSSTPSSAGSTAQNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDL 60
           MASS+ P SA +  Q+P++++G IANA K K SFIQ FAMTGILLLSVRSLGQKYRIHDL
Sbjct: 1   MASSAPPGSA-TAGQDPRKAVGLIANAMKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDL 59

Query: 61  QEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEES 109
           +ED SALKEEQ++LT R++NIK  LLHEASL+ TGLFASRLRHLFG+E+
Sbjct: 60  EEDMSALKEEQQTLTTRLSNIKQGLLHEASLDTTGLFASRLRHLFGDEN 108

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061927|ref|XP_002300668.1| predicted protein [Populus trichocarpa] gi|118486156|gb|ABK94921.1| unknown [Populus trichocarpa] gi|222842394|gb|EEE79941.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 84/94 (89%)

Query: 15  QNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESL 74
           QNP++SLG +ANA K K SFIQLFAMTGI LLS+RSLGQKY+IHDLQEDT ALKEEQ++L
Sbjct: 12  QNPRKSLGLVANAMKRKDSFIQLFAMTGIFLLSIRSLGQKYQIHDLQEDTIALKEEQKNL 71

Query: 75  TNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
           T+RM NIK SLLHEASL+ +GLFASRLR LFGE+
Sbjct: 72  TDRMKNIKRSLLHEASLDSSGLFASRLRLLFGED 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485145|ref|XP_004157081.1| PREDICTED: uncharacterized protein LOC101232386 [Cucumis sativus]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 81/104 (77%)

Query: 5   STPSSAGSTAQNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDT 64
           S PSS+    Q  K+ LG  ANA K K SFIQL AMTGILLLS RSLGQKYRI+DLQEDT
Sbjct: 4   SAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQEDT 63

Query: 65  SALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
           +ALK+E E+L +RM NIK SLLHEASLE TG FASRLR LF +E
Sbjct: 64  TALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDE 107

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141686|emb|CBI18889.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 83/96 (86%), Gaps = 2/96 (2%)

Query: 15  QNP--KRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQE 72
           QNP  K++LG IANA K K SFIQ FAM+GI LLS+RSLGQKYR++DLQEDT++LKEEQ+
Sbjct: 429 QNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQK 488

Query: 73  SLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
            L +RMN+IK SLLHEASL+ TGLFASRLR LFG++
Sbjct: 489 GLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459810|ref|XP_002285914.1| PREDICTED: uncharacterized protein LOC100247271 [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 83/96 (86%), Gaps = 2/96 (2%)

Query: 15  QNP--KRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQE 72
           QNP  K++LG IANA K K SFIQ FAM+GI LLS+RSLGQKYR++DLQEDT++LKEEQ+
Sbjct: 14  QNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQK 73

Query: 73  SLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
            L +RMN+IK SLLHEASL+ TGLFASRLR LFG++
Sbjct: 74  GLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859188|emb|CAN83941.1| hypothetical protein VITISV_013558 [Vitis vinifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 83/96 (86%), Gaps = 2/96 (2%)

Query: 15  QNP--KRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQE 72
           QNP  K++LG IANA K K SFIQ FAM+GI LLS+RSLGQKYR++DLQEDT++LKEEQ+
Sbjct: 15  QNPNKKKTLGLIANALKRKDSFIQFFAMSGIFLLSLRSLGQKYRLNDLQEDTASLKEEQK 74

Query: 73  SLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
            L +RMN+IK SLLHEASL+ TGLFASRLR LFG++
Sbjct: 75  GLHDRMNHIKRSLLHEASLDSTGLFASRLRLLFGDD 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850458|ref|XP_002893110.1| hypothetical protein ARALYDRAFT_472271 [Arabidopsis lyrata subsp. lyrata] gi|297338952|gb|EFH69369.1| hypothetical protein ARALYDRAFT_472271 [Arabidopsis lyrata subsp. lyrata]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 87/114 (76%), Gaps = 6/114 (5%)

Query: 1   MASSSTPSSAGS-TAQNPKRSL-----GFIANAKKHKHSFIQLFAMTGILLLSVRSLGQK 54
           MASS+   SA   T ++P ++L     GF  N KK+K SF Q FAMTGILLLS RS+ QK
Sbjct: 1   MASSAPQGSADPLTGKDPAKALTAVASGFFENVKKNKQSFFQFFAMTGILLLSFRSVSQK 60

Query: 55  YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
           YRIHDL+EDT+ LK+EQ+SLT+RM+ IK  LLH+AS++ TG+FASRLR LFG++
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSTGVFASRLRLLFGDD 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517556|ref|XP_003527453.1| PREDICTED: uncharacterized protein LOC100500598 [Glycine max]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/94 (69%), Positives = 79/94 (84%)

Query: 15  QNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESL 74
           ++ KR LGF+A+AK+ K SFIQ FAMTGILLLS+RSL QKY+IH LQED  AL+ E +SL
Sbjct: 15  EHSKRILGFMAHAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVEHDSL 74

Query: 75  TNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
           T+R+NNIK+ LL EAS +PTGLFASRLRHLF E+
Sbjct: 75  TDRINNIKNDLLREASHDPTGLFASRLRHLFAEQ 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394861|ref|NP_564113.1| uncharacterized protein [Arabidopsis thaliana] gi|14596113|gb|AAK68784.1| Unknown protein [Arabidopsis thaliana] gi|18377466|gb|AAL66899.1| unknown protein [Arabidopsis thaliana] gi|332191850|gb|AEE29971.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 85/114 (74%), Gaps = 6/114 (5%)

Query: 1   MASSSTPSSAGS-TAQNPKRSL-----GFIANAKKHKHSFIQLFAMTGILLLSVRSLGQK 54
           MASS+   S    T ++P ++L     GF  N KK+K SF Q  AMTGILLLS RS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 55  YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
           YRIHDL+EDT+ LK+EQ+SLT+RM+ IK  LLH+AS++ +G+FASRLR LFGE+
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722049|ref|NP_001238510.1| uncharacterized protein LOC100306672 [Glycine max] gi|255629239|gb|ACU14964.1| unknown [Glycine max]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 77/94 (81%)

Query: 15  QNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESL 74
           ++ ++ LGF+A+AK+ K SFIQ FAMTGILLLS+RSL QKY+IH LQED  AL+ +  SL
Sbjct: 15  EHSRKILGFMAHAKQRKDSFIQFFAMTGILLLSMRSLSQKYKIHGLQEDIHALRVDHGSL 74

Query: 75  TNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEE 108
           T+R+NNIK+ LL EAS + TGLFASRLRHLF E+
Sbjct: 75  TDRINNIKNDLLREASQDSTGLFASRLRHLFAEQ 108

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2034387	116	AT1G20430 "AT1G20430" [Arabido	0.798	0.75	0.666	1.9e-26

TAIR|locus:2034387 AT1G20430 "AT1G20430" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 58/87 (66%), Positives = 72/87 (82%)

Query:    22 GFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNI 81
             GF  N KK+K SF Q  AMTGILLLS RS+ QKYRIHDL+EDT+ LK+EQ+SLT+RM+ I
Sbjct:    28 GFFENVKKNKQSFFQFAAMTGILLLSFRSVSQKYRIHDLEEDTAVLKKEQDSLTDRMSKI 87

Query:    82 KHSLLHEASLEPTGLFASRLRHLFGEE 108
             K  LLH+AS++ +G+FASRLR LFGE+
Sbjct:    88 KSDLLHQASIDSSGVFASRLRLLFGED 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109        96   0.00091  102 3  11 22  0.36    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  454 (48 KB)
  Total size of DFA:  86 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.56u 0.08s 12.64t   Elapsed:  00:00:01
  Total cpu time:  12.56u 0.08s 12.64t   Elapsed:  00:00:01
  Start:  Fri May 10 07:20:49 2013   End:  Fri May 10 07:20:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	95.35
PRK00888	105	ftsB cell division protein FtsB; Reviewed	94.97
PRK13169	110	DNA replication intiation control protein YabA; Re	92.47
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	92.0
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	91.88
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	91.41
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	90.27
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	89.7
smart00338	65	BRLZ basic region leucin zipper.	88.47
PF04999	97	FtsL: Cell division protein FtsL; InterPro: IPR007	88.08
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	87.76
PF10828	110	DUF2570: Protein of unknown function (DUF2570); In	87.27
PF04999	97	FtsL: Cell division protein FtsL; InterPro: IPR007	87.19
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	86.87
PHA03162	135	hypothetical protein; Provisional	84.96
COG4467	114	Regulator of replication initiation timing [Replic	84.37
COG3159	218	Uncharacterized protein conserved in bacteria [Fun	83.57
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	83.57
COG2919	117	Septum formation initiator [Cell division and chro	82.76
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.12

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=95.35  E-value=0.088  Score=34.26  Aligned_cols=57  Identities=11%  Similarity=0.233  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033888           33 SFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA   89 (109)
Q Consensus        33 ~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA   89 (109)
                      +.+.++++..++++++=-..|++.+.++..+..+++++.+.+...-.+++.+.-...
T Consensus         2 ~~l~~~l~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~   58 (85)
T TIGR02209         2 KKLYVLLLLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS   58 (85)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            456677777777777767777777777777777777777777776666666655443

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=94.97  E-value=0.098  Score=36.97  Aligned_cols=36  Identities=14%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             hccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888           49 RSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHS   84 (109)
Q Consensus        49 RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~   84 (109)
                      +=..++.++++++.+.+.|+++|+.|...+..||+.
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~   63 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG   63 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            445678889999999999999999999999999873

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=92.47  E-value=0.28  Score=35.53  Aligned_cols=54  Identities=22%  Similarity=0.355  Sum_probs=36.9

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHhhcc
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGE  107 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRLR~Ifge  107 (109)
                      |..|..|.+|++.|+-||+.|+.++....+.=-........+..---|.+||-|
T Consensus        28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~LY~E   81 (110)
T PRK13169         28 KKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLARLYQE   81 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHc
Confidence            677889999999999999999999987744311111111113455678888865

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=92.00  E-value=0.29  Score=30.62  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             HHHHhhccchhhhhhhhHHhhHHHHHHhHHH
Q 033888           44 LLLSVRSLGQKYRIHDLQEDTSALKEEQESL   74 (109)
Q Consensus        44 ~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l   74 (109)
                      ++...+-..++.++..++.+.+.+++|.+.+
T Consensus        37 l~~~~~~~~~r~~~~~~~k~l~~le~e~~~l   67 (68)
T PF06305_consen   37 LLSLPSRLRLRRRIRRLRKELKKLEKELEQL   67 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444555889999999999999999998875

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=91.88  E-value=0.39  Score=34.39  Aligned_cols=54  Identities=22%  Similarity=0.369  Sum_probs=37.3

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH--Hh-hhhccCCCcchHHHHHHhhcc
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS--LL-HEASLEPTGLFASRLRHLFGE  107 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~--L~-~EA~~dss~v~aSRLR~Ifge  107 (109)
                      |..|..|.+|++.|+-||+.|+.++....+.  -. ........+-.-..|.+||-|
T Consensus        28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~E   84 (107)
T PF06156_consen   28 KKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQE   84 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhc
Confidence            5678889999999999999999998887661  00 112223344556678888865

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=91.41  E-value=0.5  Score=29.87  Aligned_cols=35  Identities=26%  Similarity=0.471  Sum_probs=29.9

Q ss_pred             hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888           53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH   87 (109)
Q Consensus        53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~   87 (109)
                      .+.+|++|+.....|..+|+.|...+..+++++-.
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~   58 (64)
T PF00170_consen   24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQS   58 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999998887643

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=90.27  E-value=1  Score=29.19  Aligned_cols=49  Identities=14%  Similarity=0.243  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHhh--ccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888           35 IQLFAMTGILLLSVR--SLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKH   83 (109)
Q Consensus        35 iq~~Lmg~~~~Ls~R--Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~   83 (109)
                      +-++++.+|.+...+  .-..+.++.+++.+.+.++.+|+.|......|.+
T Consensus         9 ~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209         9 LLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344555555555543  3345567888888888888888888877776654

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=89.70  E-value=1.4  Score=27.75  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=24.4

Q ss_pred             chhhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033888           52 GQKYRIHDLQEDTSALKEEQESLTNRMNNI   81 (109)
Q Consensus        52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~   81 (109)
                      ..+.+|.+|+.+.+.|+++|+.|...+..+
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345568888888888888888888888888

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>smart00338 BRLZ basic region leucin zipper

Probab=88.47  E-value=1.1  Score=28.23  Aligned_cols=35  Identities=23%  Similarity=0.445  Sum_probs=29.5

Q ss_pred             hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888           53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH   87 (109)
Q Consensus        53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~   87 (109)
                      .+..|++|+.+...|..+|..|...+..++.++..
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~   58 (65)
T smart00338       24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEK   58 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999888887654

>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum

Probab=88.08  E-value=2.1  Score=28.68  Aligned_cols=48  Identities=17%  Similarity=0.359  Sum_probs=22.8

Q ss_pred             hHHHHHHHHHHHHHHhhccchh-------hhhhhhHHhhHHHHHHhHHHHHHHHH
Q 033888           33 SFIQLFAMTGILLLSVRSLGQK-------YRIHDLQEDTSALKEEQESLTNRMNN   80 (109)
Q Consensus        33 ~fiq~~Lmg~~~~Ls~RSl~Qq-------~~I~~L~~dkasL~~en~~l~~rMw~   80 (109)
                      +.+.++|+..+++.++=...+.       ++++.++.+...|..||+.|.--.-.
T Consensus        13 ~~l~i~l~~~v~~~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~   67 (97)
T PF04999_consen   13 KKLIILLVIVVLISALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIAT   67 (97)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445444444444333444       44555555555555555555443333

One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=87.76  E-value=1  Score=28.30  Aligned_cols=47  Identities=17%  Similarity=0.248  Sum_probs=39.0

Q ss_pred             HHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033888           42 GILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE   88 (109)
Q Consensus        42 ~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E   88 (109)
                      -++.+++-...+..++..+..+...|+++.+.++....++++++-..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen    4 FLVIFLVFGISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             ehhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666677888899999999999999999999999999887654

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT

Probab=87.27  E-value=3.6  Score=28.88  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHh
Q 033888           34 FIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQ   71 (109)
Q Consensus        34 fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en   71 (109)
                      |+.+.|..=|+.|+.=++.|.++|+.|.+++..+.+..
T Consensus         4 ~~~~~l~~lvl~L~~~l~~qs~~i~~L~a~n~~q~~tI   41 (110)
T PF10828_consen    4 YIYIALAVLVLGLGGWLWYQSQRIDRLRAENKAQAQTI   41 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333333355566667789999999999987644443

3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.

>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum

Probab=87.19  E-value=2.7  Score=28.12  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.7

Q ss_pred             cchhhhhhhhHHhhHHHHHHhHHHHH
Q 033888           51 LGQKYRIHDLQEDTSALKEEQESLTN   76 (109)
Q Consensus        51 l~Qq~~I~~L~~dkasL~~en~~l~~   76 (109)
                      ...+.+++.|++|...|+-|...++.
T Consensus        45 ~~l~~~~~~l~~e~~~L~lE~~~l~~   70 (97)
T PF04999_consen   45 QQLEKEIDQLQEENERLRLEIATLSS   70 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            46778899999999999999998875

One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=86.87  E-value=1.6  Score=27.05  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888           55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLL   86 (109)
Q Consensus        55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~   86 (109)
                      ..-+.|.+|.++|.+||+.|+.-+-.++..|.
T Consensus        12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen   12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44588999999999999999998888877653

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03162 hypothetical protein; Provisional

Probab=84.96  E-value=1  Score=34.22  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=26.9

Q ss_pred             hccchhhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033888           49 RSLGQKYRIHDLQEDTSALKEEQESLTNRMN   79 (109)
Q Consensus        49 RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw   79 (109)
                      +--+||-.+|+|+++..-|+-||+.|++.|.
T Consensus         7 ~~pk~~~tmEeLaaeL~kLqmENK~LKkkl~   37 (135)
T PHA03162          7 KCPKAQPTMEDLAAEIAKLQLENKALKKKIK   37 (135)
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457889999999999999999999987764

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=84.37  E-value=1  Score=33.50  Aligned_cols=52  Identities=29%  Similarity=0.371  Sum_probs=35.6

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCC------CcchHHHHHHhhcc
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEP------TGLFASRLRHLFGE  107 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ds------s~v~aSRLR~Ifge  107 (109)
                      |..+..|-+|+..|+-||+.|++|+-+  ..+-+.+..-.      .+-.--.|..||+|
T Consensus        28 K~~l~~lvEEN~~L~lENe~LR~RL~~--~~~e~~~~~k~~~~~~~~~~~~dnL~~lY~E   85 (114)
T COG4467          28 KQHLGSLVEENTALRLENEKLRERLGE--PTLEKTAVKKEKPAVKKKGEGYDNLARLYQE   85 (114)
T ss_pred             HHHHHHHHHhhHHHHhhHHHHHHHhCC--ccccchhhhcccccccccCCCchhHHHHHhc
Confidence            556777778888888888888888877  44444333332      44556788889986

>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.57  E-value=1.6  Score=35.42  Aligned_cols=55  Identities=29%  Similarity=0.371  Sum_probs=47.5

Q ss_pred             hhhhhhhhHHhhHHHH---HHhHHHHHHHHHHHHHHhhhhccCCCcchHHH-HHHhhcc
Q 033888           53 QKYRIHDLQEDTSALK---EEQESLTNRMNNIKHSLLHEASLEPTGLFASR-LRHLFGE  107 (109)
Q Consensus        53 Qq~~I~~L~~dkasL~---~en~~l~~rMw~~k~~L~~EA~~dss~v~aSR-LR~Ifge  107 (109)
                      |.++|+.|+++...|.   .+|+.+-.++-.|+.+|+...+.+.-....-+ +++.||=
T Consensus        50 ~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l  108 (218)
T COG3159          50 LRNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGL  108 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCC
Confidence            6788999999988776   58999999999999999999998887777777 8888873

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=83.57  E-value=3  Score=25.74  Aligned_cols=32  Identities=25%  Similarity=0.500  Sum_probs=26.3

Q ss_pred             hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888           53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHS   84 (109)
Q Consensus        53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~   84 (109)
                      +|-.+++|+.+...|..+|..|...+..++++
T Consensus        23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen   23 KKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45678889999999999999998888877754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>COG2919 Septum formation initiator [Cell division and chromosome partitioning]

Probab=82.76  E-value=4  Score=29.05  Aligned_cols=43  Identities=16%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888           40 MTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHS   84 (109)
Q Consensus        40 mg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~   84 (109)
                      .|......+..+.+  +|.+++++.+.|.++|..|...+.+++++
T Consensus        44 ~g~~~~~~~~~l~~--qi~~~~~e~~~L~~~~~~l~~ei~~L~dg   86 (117)
T COG2919          44 FGKNGAADVLQLQR--QIAAQQAELEKLSARNTALEAEIKDLKDG   86 (117)
T ss_pred             HHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33344444444443  34477777777888888888888888776

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.12  E-value=4.4  Score=27.26  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=18.3

Q ss_pred             hhhhhhhHHh-------hHHHHHHhHHHHHHHHHHHHHH
Q 033888           54 KYRIHDLQED-------TSALKEEQESLTNRMNNIKHSL   85 (109)
Q Consensus        54 q~~I~~L~~d-------kasL~~en~~l~~rMw~~k~~L   85 (109)
                      |.+|+.|+++       +..|+.+|+.|+.--..|+.-|
T Consensus        24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl   62 (72)
T PF06005_consen   24 QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556555       5555556666666666665544

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 12/75 (16%)

Query: 46  LSVRSLGQK------YRIHDLQEDTSALKEEQESLTNRM----NNIKHSLLHEASLEPT- 94
           L   SL +K        I  +  +     E + +L   +    N  K     +       
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 95  GLFASRL-RHLFGEE 108
             F S +  HL   E
Sbjct: 471 QYFYSHIGHHLKNIE 485

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	91.47
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	89.59
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	89.54
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	89.35
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	88.6
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	88.34
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	88.13
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	87.09
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	84.07
3lay_A	175	Zinc resistance-associated protein; salmonella typ	80.57
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	80.36

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=91.47  E-value=0.19  Score=31.89  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL   85 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L   85 (109)
                      |.++++|+.+...|..+|..|...+..|+++|
T Consensus        29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999876

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=89.59  E-value=0.56  Score=28.90  Aligned_cols=33  Identities=12%  Similarity=0.271  Sum_probs=24.4

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL   86 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~   86 (109)
                      |.+++.|+.+...|..+|..|...+..+++++.
T Consensus        21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~   53 (61)
T 1t2k_D           21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA   53 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888888888777777776653

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=89.54  E-value=0.29  Score=30.30  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=28.1

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL   85 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L   85 (109)
                      |.++++|+.+...|..||..|...+..+++.+
T Consensus        21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999998887653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=89.35  E-value=0.59  Score=29.19  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=27.5

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL   86 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~   86 (109)
                      |.++..|+.+...|..+|+.|...+..+++++.
T Consensus        22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~   54 (63)
T 2wt7_A           22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKE   54 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456889999999999999999998888887754

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=88.60  E-value=0.72  Score=28.55  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888           53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL   86 (109)
Q Consensus        53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~   86 (109)
                      .+.+|++|+.+...|..+|..|...+..+++++-
T Consensus        20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~   53 (62)
T 1jnm_A           20 KLERIARLEEKVKTLKAQNSELASTANMLREQVA   53 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999998888764

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=88.34  E-value=0.75  Score=28.45  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=28.4

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL   86 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~   86 (109)
                      .-++++|..|++.|+..++.|..+.-.++..|-
T Consensus        18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457889999999999999999999988888774

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=88.13  E-value=0.77  Score=28.28  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH   87 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~   87 (109)
                      +.+++.|+.++..|+.+...|..-+..||+.|++
T Consensus        28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla   61 (61)
T 1t2k_D           28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4568899999999999999999999999998874

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=87.09  E-value=1  Score=28.31  Aligned_cols=32  Identities=16%  Similarity=0.373  Sum_probs=26.7

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL   85 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L   85 (109)
                      +-++++|+.+...|..+|..|..++..++.+.
T Consensus        22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~   53 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEI   53 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44588899999999999999999988888765

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=84.07  E-value=1.8  Score=24.93  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=26.1

Q ss_pred             hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888           56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL   85 (109)
Q Consensus        56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L   85 (109)
                      +|-+|..|.+.|++|..+|+-.+-.+||+.
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkqgy   32 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQGY   32 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            678889999999999999999888888864

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=80.57  E-value=2.2  Score=31.79  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=29.6

Q ss_pred             hhHHHHHhhccchHHHHHHHHH-HHHHH---------------hh------ccchhhhhhhhHHhhHHHHHHhHHHHHHH
Q 033888           21 LGFIANAKKHKHSFIQLFAMTG-ILLLS---------------VR------SLGQKYRIHDLQEDTSALKEEQESLTNRM   78 (109)
Q Consensus        21 ~g~~a~A~k~k~~fiq~~Lmg~-~~~Ls---------------~R------Sl~Qq~~I~~L~~dkasL~~en~~l~~rM   78 (109)
                      +=|-++.||+...++-.++... +++.|               ++      |.+||.+|++|.++   -+.+.+.++..|
T Consensus        18 ~~~~~~~Mk~~kk~~la~~al~~l~l~s~~A~A~g~~~~g~gm~~q~~LnLT~EQq~ql~~I~~e---~r~~~~~Lr~ql   94 (175)
T 3lay_A           18 LYFQSNAMKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPLTTEQQATAQKIYDD---YYTQTSALRQQL   94 (175)
T ss_dssp             --------------------------------------------------CCHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCccccccccCCHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            4566788886666553333333 22221               23      35677777776544   345666788889


Q ss_pred             HHHHHHHhhhhccCC
Q 033888           79 NNIKHSLLHEASLEP   93 (109)
Q Consensus        79 w~~k~~L~~EA~~ds   93 (109)
                      ++.+++|-.+..+|+
T Consensus        95 ~akr~EL~aL~~a~~  109 (175)
T 3lay_A           95 ISKRYEYNALLTASS  109 (175)
T ss_dssp             HHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999998876654

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=80.36  E-value=3.3  Score=27.06  Aligned_cols=38  Identities=16%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033888           54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL   91 (109)
Q Consensus        54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~   91 (109)
                      ..+++.++.+...|.+.-+.+...|.+||..|..--..
T Consensus        76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            46788889999999999999999999999998875443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00