Citrus Sinensis ID: 033900

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNGFRG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEEcccccccEEEccccEEEEEEEccccccHHHHHHHHHHHHHcccccccEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEccccccccEccccHHHcEEEEcccccccHHHHHHHHHHHHHHcccHHHHHHEEEEEEEccccc
Coil and Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpscirlvppssvsitihakpgskscsitdvsdeavgvqidapakdgEANAALLEYMSSLIHVSVGEFVESVQVFFLNGFRG
Flexible Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpsciRLVPPSSVSITihakpgskscsiTDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNGFRG
Low Complexity Region (SEG)
MAPakkgkskaksagsTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNGFRG
Disordered region (IsUnstruct)
*******************************IRL*******I*******************AVGVQID*****GEANAALLEYMSSLIHVSVGEFVESVQVFFLNGF**
Disordered Region (DISOPRED)
********************************RLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNG***
Disordered Region (DISEMBL)
**********************TNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNGFRG
Disordered Region (DISPRO)
**************************NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNGFRG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNGFRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q3ZBP8	126	UPF0235 protein C15orf40	yes	no	0.770	0.666	0.431	4e-10
Q9CRC3	126	UPF0235 protein C15orf40	yes	no	0.816	0.706	0.404	6e-10
Q8WUR7	126	UPF0235 protein C15orf40	no	no	0.779	0.674	0.411	9e-10
Q505I4	126	UPF0235 protein C15orf40	no	no	0.522	0.452	0.508	1e-09
A1KB74	98	UPF0235 protein azo3464 O	yes	no	0.541	0.602	0.305	0.0002
C1D6C4	97	UPF0235 protein LHK_03181	yes	no	0.477	0.536	0.326	0.0006
B8F6W0	97	UPF0235 protein HAPS_1504	yes	no	0.605	0.680	0.315	0.0009

>sp|Q3ZBP8|CO040_BOVIN UPF0235 protein C15orf40 homolog OS=Bos taurus PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 11 AKSAGSTQSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQID 68
          A + G  QSK    +  LP    + + P   VSI IHAKPGSK  ++TDV+ EAV V I 
Sbjct: 7  ATNKGKNQSK--EPERPLPPLGPVTVDPKGGVSIAIHAKPGSKQNAVTDVTTEAVSVAIA 64

Query: 69 APAKDGEANAALLEYMSSLIHVSVGEFV 96
          AP  +GEANA L  Y+S ++ +   + V
Sbjct: 65 APPTEGEANAELCRYLSKVLELRKSDVV 92

Bos taurus (taxid: 9913)

>sp|Q9CRC3|CO040_MOUSE UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%)

Query: 8  KSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQI 67
          K+ A S G  Q+K           +   P   V+I IHAKPGS+  ++TD+S EAVGV I
Sbjct: 4  KAGATSKGKNQTKEPETAPPAAGPVATDPKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAI 63

Query: 68 DAPAKDGEANAALLEYMSSLIHVSVGEFV 96
           AP  +GEANA L  Y+S ++ +   + V
Sbjct: 64 AAPPSEGEANAELCRYLSKVLDLRKSDVV 92

Mus musculus (taxid: 10090)

>sp|Q8WUR7|CO040_HUMAN UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf40 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 12 KSAGST---QSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQ 66
          K AG+T   +S+ K  +  LP    + + P   V+I IHAKPGSK  ++TD++ EAV V 
Sbjct: 3  KKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVA 62

Query: 67 IDAPAKDGEANAALLEYMSSLIHVSVGEFV 96
          I AP  +GEANA L  Y+S ++ +   + V
Sbjct: 63 IAAPPSEGEANAELCRYLSKVLELRKSDVV 92

Homo sapiens (taxid: 9606)

>sp|Q505I4|CO040_RAT UPF0235 protein C15orf40 homolog OS=Rattus norvegicus PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%)

Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV 96
          V+I IHAKPGSK  ++TD++ EAVGV I AP  +GEANA L  Y+S ++ +   + V
Sbjct: 36 VTIAIHAKPGSKQNAVTDLNTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDVV 92

Rattus norvegicus (taxid: 10116)

>sp|A1KB74|Y3464_AZOSB UPF0235 protein azo3464 OS=Azoarcus sp. (strain BH72) GN=azo3464 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 32 IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          +R     S+++T+H +PG++      +  EA+ +++ AP  DG+ANAAL  +++    V
Sbjct: 5  VREAADGSLTLTLHIQPGARQTGFAGLHGEAMKIRLAAPPVDGKANAALCAFLADFCEV 63

Azoarcus sp. (strain BH72) (taxid: 62928)

>sp|C1D6C4|Y3181_LARHH UPF0235 protein LHK_03181 OS=Laribacter hongkongensis (strain HLHK9) GN=LHK_03181 PE=3 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 34/52 (65%)

Query: 40 VSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVS 91
          V +T+H +PG++   +  +  +A+ +++ AP  DG+ANA LL +++  + VS
Sbjct: 11 VRLTLHVQPGARRTEVAGLHGDALKIRLAAPPVDGKANACLLAFLARGLGVS 62

Laribacter hongkongensis (strain HLHK9) (taxid: 557598)

>sp|B8F6W0|Y1504_HAEPS UPF0235 protein HAPS_1504 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=HAPS_1504 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)

Query: 37  PSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHV------ 90
           P  + + I  +P +    I  + D  + + I AP  DG+ANA LL+Y+S L  V      
Sbjct: 10  PQGIRLRIFLQPKASRDQIVGLHDNELKIAITAPPIDGQANAHLLKYLSKLFKVPKSSIV 69

Query: 91  -SVGEFVESVQVF 102
              GE     Q+F
Sbjct: 70  LEKGELQRHKQIF 82

Haemophilus parasuis serovar 5 (strain SH0165) (taxid: 557723)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
225431557	128	PREDICTED: UPF0235 protein C15orf40 homo	0.816	0.695	0.733	6e-29
30694498	126	uncharacterized protein [Arabidopsis tha	0.798	0.690	0.711	7e-27
351726281	126	uncharacterized protein LOC100527290 [Gl	0.798	0.690	0.711	1e-26
351722711	126	uncharacterized protein LOC100499954 [Gl	0.798	0.690	0.711	2e-26
7770327	91	F27J15.6 [Arabidopsis thaliana]	0.770	0.923	0.724	3e-26
449467753	156	PREDICTED: UPF0235 protein C15orf40 homo	0.807	0.564	0.703	9e-26
297852564	126	hypothetical protein ARALYDRAFT_474060 [	0.798	0.690	0.688	3e-25
224131202	131	predicted protein [Populus trichocarpa]	0.688	0.572	0.766	1e-23
357464555	125	hypothetical protein MTR_3g095670 [Medic	0.587	0.512	0.828	2e-23
226496211	129	LOC100284194 [Zea mays] gi|195640232|gb|	0.825	0.697	0.555	2e-22

>gi|225431557|ref|XP_002282176.1| PREDICTED: UPF0235 protein C15orf40 homolog [Vitis vinifera] gi|147866968|emb|CAN83055.1| hypothetical protein VITISV_009894 [Vitis vinifera]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 75/90 (83%), Gaps = 1/90 (1%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP+KKGK+KA S GSTQS    N  + PSCIR VPPSSVSIT+HAKPGSK  SITD  D
Sbjct: 1  MAPSKKGKAKANSGGSTQSSDSVN-SSFPSCIRFVPPSSVSITVHAKPGSKVSSITDFDD 59

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EA+GVQIDAPAKDGEANAALL+Y+SS++ V
Sbjct: 60 EALGVQIDAPAKDGEANAALLDYISSVVGV 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694498|ref|NP_175343.2| uncharacterized protein [Arabidopsis thaliana] gi|34365605|gb|AAQ65114.1| At1g49170 [Arabidopsis thaliana] gi|51971533|dbj|BAD44431.1| similar to serine/threonine kinase 9 gb|AAD28798.1 [Arabidopsis thaliana] gi|332194278|gb|AEE32399.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALLEYMSS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLEYMSSVLGV 87

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726281|ref|NP_001237633.1| uncharacterized protein LOC100527290 [Glycine max] gi|255632017|gb|ACU16361.1| unknown [Glycine max]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 77/90 (85%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          M PAK+GK+KA+   +T S+ K ND   PSCIR VPPSSV+ITIHAKPGSKS S+TD+SD
Sbjct: 1  MPPAKRGKAKAEPKVTTPSE-KPND--FPSCIRSVPPSSVAITIHAKPGSKSASVTDISD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALL+Y+SS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLDYISSVLGV 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722711|ref|NP_001238533.1| uncharacterized protein LOC100499954 [Glycine max] gi|255627953|gb|ACU14321.1| unknown [Glycine max]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 78/90 (86%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          M PAK+GK+KA+S  +T S+ K ND   PSCI+ VPPSSV+ITIHAKPG+KS SITD+SD
Sbjct: 1  MPPAKRGKAKAESKVTTPSE-KPND--FPSCIQSVPPSSVAITIHAKPGAKSASITDISD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALL+Y+SS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLDYISSVLGV 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7770327|gb|AAF69697.1|AC016041_2 F27J15.6 [Arabidopsis thaliana]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 3/87 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSL 87
          EAVGVQIDAPA+DGEANAALLEYMSS+
Sbjct: 58 EAVGVQIDAPARDGEANAALLEYMSSV 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467753|ref|XP_004151587.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus] gi|449513315|ref|XP_004164293.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 75/91 (82%), Gaps = 3/91 (3%)

Query: 1   MAPAKKGKSKA-KSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVS 59
           M PAKKGK+KA K+  S QS +K+N  N PSC+R V PSSV+ITIHAKPGSK  SITD  
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKSN--NYPSCLRSVSPSSVAITIHAKPGSKIASITDFG 86

Query: 60  DEAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
           D+A+GVQIDAPAKDGEANAALL+YMSS++ V
Sbjct: 87  DDALGVQIDAPAKDGEANAALLDYMSSVLGV 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852564|ref|XP_002894163.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata] gi|297340005|gb|EFH70422.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 73/90 (81%), Gaps = 3/90 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T     P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSIFPACLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAALLE++SS++ V
Sbjct: 58 EAVGVQIDAPARDGEANAALLEFISSVLGV 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131202|ref|XP_002328480.1| predicted protein [Populus trichocarpa] gi|222838195|gb|EEE76560.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 66/77 (85%), Gaps = 2/77 (2%)

Query: 16 STQSK--IKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKD 73
          STQSK    +   N PSCIR VPPSSV+ITIHAKPGSKS SITD+SDEAVGVQIDAPAKD
Sbjct: 16 STQSKPTAPSPQNNFPSCIRAVPPSSVAITIHAKPGSKSASITDLSDEAVGVQIDAPAKD 75

Query: 74 GEANAALLEYMSSLIHV 90
          GEANAALL+Y+SS++ V
Sbjct: 76 GEANAALLDYISSVLGV 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464555|ref|XP_003602559.1| hypothetical protein MTR_3g095670 [Medicago truncatula] gi|355491607|gb|AES72810.1| hypothetical protein MTR_3g095670 [Medicago truncatula]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 61/64 (95%)

Query: 27 NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
          N+PSCIR +PPSSV+ITIHAKPGSKS SITDVSDEAVGVQIDAPA+DGEANAALL+Y+SS
Sbjct: 24 NIPSCIRCMPPSSVAITIHAKPGSKSASITDVSDEAVGVQIDAPARDGEANAALLDYISS 83

Query: 87 LIHV 90
          ++ V
Sbjct: 84 VLGV 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496211|ref|NP_001150562.1| LOC100284194 [Zea mays] gi|195640232|gb|ACG39584.1| uncharacterized ACR, YggU family COG1872 containing protein [Zea mays]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 68/90 (75%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP K+GK+K  +         T     P C+RL+PPS+V+I+IHAKPGSK  +IT++ D
Sbjct: 1  MAPGKRGKAKGAAPPPPTXAASTGAVGFPGCLRLMPPSTVAISIHAKPGSKVATITEIGD 60

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHV 90
          EAVGVQIDAPA+DGEANAAL++++SS++ V
Sbjct: 61 EAVGVQIDAPARDGEANAALVDFISSVLGV 90

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2028511	126	AT1G49170 "AT1G49170" [Arabido	0.669	0.579	0.726	1.8e-23
MGI|MGI:1914540	126	3110040N11Rik "RIKEN cDNA 3110	0.559	0.484	0.491	9.4e-11
TAIR|locus:2167361	232	AT5G63440 "AT5G63440" [Arabido	0.669	0.314	0.32	0.00012

TAIR|locus:2028511 AT1G49170 "AT1G49170" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 53/73 (72%), Positives = 63/73 (86%)

Query:    18 QSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEAN 77
             +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSDEAVGVQIDAPA+DGEAN
Sbjct:    15 ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSDEAVGVQIDAPARDGEAN 74

Query:    78 AALLEYMSSLIHV 90
             AALLEYMSS++ V
Sbjct:    75 AALLEYMSSVLGV 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1914540 3110040N11Rik "RIKEN cDNA 3110040N11 gene" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/61 (49%), Positives = 41/61 (67%)

Query:    36 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEF 95
             P   V+I IHAKPGS+  ++TD+S EAVGV I AP  +GEANA L  Y+S ++ +   + 
Sbjct:    32 PKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDV 91

Query:    96 V 96
             V
Sbjct:    92 V 92

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167361 AT5G63440 "AT5G63440" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00012, P = 0.00012
 Identities = 24/75 (32%), Positives = 41/75 (54%)

Query:    22 KTN--DENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAA 79
             +TN  D  +P CI  +    V + I  +  ++  +IT V+ + V V + APA  GEAN  
Sbjct:   124 ETNPQDAPVPPCISQLDGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNE 183

Query:    80 LLEYMSSLIHVSVGE 94
             LLE+M  ++ + + +
Sbjct:   184 LLEFMGRVLGLRLSQ 198


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109        96   0.00091  102 3  11 23  0.41    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  506 (54 KB)
  Total size of DFA:  94 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.78u 0.14s 10.92t   Elapsed:  00:00:00
  Total cpu time:  10.78u 0.14s 10.92t   Elapsed:  00:00:00
  Start:  Fri May 10 07:56:49 2013   End:  Fri May 10 07:56:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
pfam02594	78	pfam02594, DUF167, Uncharacterized ACR, YggU famil	2e-08
COG1872	102	COG1872, COG1872, Uncharacterized conserved protei	3e-04

>gnl|CDD|217130 pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872

 Score = 46.8 bits (112), Expect = 2e-08
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 39 SVSITIHAKPGSKSCSITDV-SDEAVGVQIDAPAKDGEANAALLEYMS 85
           V + +  KP +K  SI  V  D  + V+I AP  DG+ANA L+++++
Sbjct: 4  GVLLRVRVKPNAKKNSIVGVEEDGELKVRITAPPVDGKANAELIKFLA 51

Length = 78

>gnl|CDD|224784 COG1872, COG1872, Uncharacterized conserved protein [Function unknown]

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 40 VSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGE 94
          V + +  KP +K  SI  + +  + + V+I AP  DG+AN  L+++++    V    
Sbjct: 13 VLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSS 69

Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
PRK05090	95	hypothetical protein; Validated	99.92
PF02594	77	DUF167: Uncharacterised ACR, YggU family COG1872;	99.9
PRK01310	104	hypothetical protein; Validated	99.9
KOG3276	125	consensus Uncharacterized conserved protein, conta	99.89
PRK00647	96	hypothetical protein; Validated	99.89
PRK01530	105	hypothetical protein; Reviewed	99.89
COG1872	102	Uncharacterized conserved protein [Function unknow	99.88
TIGR00251	87	conserved hypothetical protein TIGR00251.	99.87
PRK04021	92	hypothetical protein; Reviewed	99.85
PF01187	114	MIF: Macrophage migration inhibitory factor (MIF);	91.47
PF09581	188	Spore_III_AF: Stage III sporulation protein AF (Sp	89.54
PTZ00397	116	macrophage migration inhibition factor-like protei	83.3

>PRK05090 hypothetical protein; Validated

Probab=99.92  E-value=4.6e-25  Score=153.14  Aligned_cols=77  Identities=21%  Similarity=0.320  Sum_probs=72.9

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEE
Q 033900           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVF  102 (109)
Q Consensus        29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~  102 (109)
                      |.|+++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+|||||++|++|||+.|+||+|+|+      .|.|++
T Consensus         1 ~~~~~~~~~-~~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~~G~tsr~K~v   79 (95)
T PRK05090          1 MSAVTWDGD-GLVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGRHKQV   79 (95)
T ss_pred             CCceEEeCC-eEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEE
Confidence            578888775 8999999999999999999999999999999999999999999999999999999999      789999


Q ss_pred             Eeec
Q 033900          103 FLNG  106 (109)
Q Consensus       103 ~~~g  106 (109)
                      .|.|
T Consensus        80 ~I~~   83 (95)
T PRK05090         80 RIIN   83 (95)
T ss_pred             EEcC
Confidence            9876

>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function

Probab=99.90  E-value=5.8e-24  Score=142.28  Aligned_cols=69  Identities=26%  Similarity=0.515  Sum_probs=60.4

Q ss_pred             CeEEEEEEEecCCCccccccccCC-eEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEEEeec
Q 033900           38 SSVSITIHAKPGSKSCSITDVSDE-AVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVFFLNG  106 (109)
Q Consensus        38 g~v~L~V~VkP~Ak~~~I~g~~~~-~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~~~~g  106 (109)
                      ++++|.|+|+|+|++++|.+++++ .|+|+|+|||+||+||+||++|||+.|+||+|+|+      .|.|++.|.|
T Consensus         2 ~~~~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~G~~Sr~K~v~i~~   77 (77)
T PF02594_consen    2 DGVILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVSGHTSRNKVVRIEN   77 (77)
T ss_dssp             TEEEEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC-CCCSEEEEEEE-
T ss_pred             CeEEEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEecCCCCceEEEEeC
Confidence            589999999999999999999996 99999999999999999999999999999999999      7899998875

Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.

>PRK01310 hypothetical protein; Validated

Probab=99.90  E-value=1.7e-23  Score=147.27  Aligned_cols=76  Identities=18%  Similarity=0.326  Sum_probs=69.9

Q ss_pred             cceEeeCCCeEEEEEEEecCCCccccccccC-----CeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EE
Q 033900           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD-----EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ES   98 (109)
Q Consensus        30 ~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~-----~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~   98 (109)
                      .+|++.++ +++|.|+|+|+|++++|.++++     +.|+|+|+|||+|||||+||++|||+.|+||+|+|+      .|
T Consensus         3 ~~~~~~~~-~~~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~l~v~ks~I~iv~G~tsR   81 (104)
T PRK01310          3 EPWRYSAD-GLRLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKALGVPKSSVRLLSGATSR   81 (104)
T ss_pred             CceEECCC-cEEEEEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence            46777776 8999999999999999999864     389999999999999999999999999999999999      78


Q ss_pred             EeEEEeec
Q 033900           99 VQVFFLNG  106 (109)
Q Consensus        99 ~~~~~~~g  106 (109)
                      .|++.|.|
T Consensus        82 ~K~v~I~~   89 (104)
T PRK01310         82 LKQLRIDG   89 (104)
T ss_pred             ceEEEEeC
Confidence            99999987

>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]

Probab=99.89  E-value=3e-23  Score=149.39  Aligned_cols=100  Identities=44%  Similarity=0.716  Sum_probs=91.4

Q ss_pred             CCCcccCcccccCCCCccccCCCCCCCCCcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHH
Q 033900            1 MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAAL   80 (109)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aL   80 (109)
                      |.|+++|++..+.+.++     .+...+|+||+.+..|.+.|.|+++|||++++|+++.++.+.|.|.|||.+|+||+||
T Consensus         1 i~pkk~g~s~k~~~t~~-----~~~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeL   75 (125)
T KOG3276|consen    1 VMPKKKGKSTKGAETSK-----VDDKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAEL   75 (125)
T ss_pred             CccccccccccccccCC-----CccCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHH
Confidence            67999999999988874     5667788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCceE------EEEeEEEee
Q 033900           81 LEYMSSLIHVSVGEFV------ESVQVFFLN  105 (109)
Q Consensus        81 i~~LAk~L~Vpks~I~------~~~~~~~~~  105 (109)
                      ++||++.||+++|+++      +|-|++.|.
T Consensus        76 l~ylskvLgLRksdv~ldkG~kSrsKvv~i~  106 (125)
T KOG3276|consen   76 LEYLSKVLGLRKSDVTLDKGWKSRSKVVVIE  106 (125)
T ss_pred             HHHHHHHhhhhhhheeecccccccceEEEEe
Confidence            9999999999999999      666666654

>PRK00647 hypothetical protein; Validated

Probab=99.89  E-value=3.4e-23  Score=144.29  Aligned_cols=70  Identities=11%  Similarity=0.258  Sum_probs=66.0

Q ss_pred             CCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEEEeec
Q 033900           37 PSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVFFLNG  106 (109)
Q Consensus        37 ~g~v~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~~~~g  106 (109)
                      ++.+.|.|+|+|+|++++|.+++++.|+|+|+|||+|||||+||++|||+.|+||+|+|+      .|.|++.|.+
T Consensus         3 ~~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~Iv~G~tSr~K~v~i~~   78 (96)
T PRK00647          3 EGFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTLIAGETSRKKKVLLPR   78 (96)
T ss_pred             CCcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEECh
Confidence            357999999999999999999999999999999999999999999999999999999999      7888888754

>PRK01530 hypothetical protein; Reviewed

Probab=99.89  E-value=4.9e-23  Score=145.33  Aligned_cols=71  Identities=17%  Similarity=0.336  Sum_probs=66.7

Q ss_pred             CCeEEEEEEEecCCCcccccccc----CCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEEEeec
Q 033900           37 PSSVSITIHAKPGSKSCSITDVS----DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVFFLNG  106 (109)
Q Consensus        37 ~g~v~L~V~VkP~Ak~~~I~g~~----~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~~~~g  106 (109)
                      .+++.|.|+|+|+|++++|.+++    ++.|+|+|+|||+|||||+||++|||+.|+||+|+|+      .|.|++.|.|
T Consensus        11 ~~gv~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~tSR~K~i~I~g   90 (105)
T PRK01530         11 SHQALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHSLKTILIKN   90 (105)
T ss_pred             CCcEEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCCceEEEEeC
Confidence            35899999999999999999885    4799999999999999999999999999999999999      7999999988


Q ss_pred             c
Q 033900          107 F  107 (109)
Q Consensus       107 ~  107 (109)
                      .
T Consensus        91 ~   91 (105)
T PRK01530         91 I   91 (105)
T ss_pred             C
Confidence            5

>COG1872 Uncharacterized conserved protein [Function unknown]

Probab=99.88  E-value=9e-23  Score=143.56  Aligned_cols=77  Identities=22%  Similarity=0.405  Sum_probs=71.1

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCccccccccCCe--EEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEe
Q 033900           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEA--VGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQ  100 (109)
Q Consensus        29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~--L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~  100 (109)
                      +.+++..++ ++.|+|+|+|+|+++.|.++++++  |+|+|++||++||||++|++|||+.|++|+|+|+      .|.|
T Consensus         3 ~~~~~~~~~-~~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~ivsGetsR~K   81 (102)
T COG1872           3 ESAVKELDD-GVLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEIVSGETSRLK   81 (102)
T ss_pred             hhhHhhcCC-ceEEEEEECCCCccCcccceecCcceEEEEEecCCCCcchhHHHHHHHHHHhCCCcccEEEEecCcccce
Confidence            456677776 899999999999999999998876  9999999999999999999999999999999999      7899


Q ss_pred             EEEeec
Q 033900          101 VFFLNG  106 (109)
Q Consensus       101 ~~~~~g  106 (109)
                      ++.|-|
T Consensus        82 ~v~i~~   87 (102)
T COG1872          82 TVLIKN   87 (102)
T ss_pred             EEEecC
Confidence            998876

>TIGR00251 conserved hypothetical protein TIGR00251

Probab=99.87  E-value=7.3e-22  Score=135.18  Aligned_cols=70  Identities=23%  Similarity=0.365  Sum_probs=64.8

Q ss_pred             EeeCCCeEEEEEEEecCCCccccccccC--CeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEEEe
Q 033900           33 RLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVFFL  104 (109)
Q Consensus        33 ~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~~~  104 (109)
                      ++.++ +++|.|+|+|+|++++|.++++  +.|+|+|+|||+|||||+||++|||+.|+|   +|+      .|.|++.|
T Consensus         2 ~~~~~-g~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~l~v---~I~i~~G~tsR~K~v~I   77 (87)
T TIGR00251         2 RENDD-GLLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEIFGV---DVEIVSGELSRQKTIKI   77 (87)
T ss_pred             eEeCC-eEEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHHhCc---eEEEEecCCCCceEEEE
Confidence            45554 8999999999999999999999  899999999999999999999999999999   676      78999999


Q ss_pred             ec
Q 033900          105 NG  106 (109)
Q Consensus       105 ~g  106 (109)
                      .|
T Consensus        78 ~~   79 (87)
T TIGR00251        78 IN   79 (87)
T ss_pred             eC
Confidence            87

>PRK04021 hypothetical protein; Reviewed

Probab=99.85  E-value=4.7e-21  Score=132.27  Aligned_cols=72  Identities=24%  Similarity=0.439  Sum_probs=65.2

Q ss_pred             eEeeCCCeEEEEEEEecCCCccccccccC--CeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEEE
Q 033900           32 IRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVFF  103 (109)
Q Consensus        32 i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~~  103 (109)
                      +++..+ ++.|.|+|+|+|++++|.++++  +.|+|+|+|||+||+||+||++|||+.|++   +|+      .|.|++.
T Consensus         2 ~~~~~~-~v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~l~~---~I~I~~G~~sr~K~v~   77 (92)
T PRK04021          2 LKETKE-GVILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKLLGA---EVEIIRGETSREKDLL   77 (92)
T ss_pred             eEEeCC-cEEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHHhCC---CEEEEecCCcCceEEE
Confidence            567675 8999999999999999998865  899999999999999999999999999998   465      7899999


Q ss_pred             eecc
Q 033900          104 LNGF  107 (109)
Q Consensus       104 ~~g~  107 (109)
                      |.|.
T Consensus        78 i~g~   81 (92)
T PRK04021         78 VKGI   81 (92)
T ss_pred             EecC
Confidence            9874

>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []

Probab=91.47  E-value=0.78  Score=31.71  Aligned_cols=61  Identities=18%  Similarity=0.265  Sum_probs=41.0

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCC-CChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAK-DGEAN----AALLEYMSSLIHVSVGEFVESVQVF  102 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPv-dGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~  102 (109)
                      .|-|.|+++..-. +.|-++...-+.|++--. +.+.|    ++|.+||.+.||||+++|-+.|--+
T Consensus        36 ~i~V~v~~~~~m~-fgGs~~P~a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~f~d~  101 (114)
T PF01187_consen   36 YIMVTVEDGQRMS-FGGSDDPAAFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYINFHDL  101 (114)
T ss_dssp             GEEEEEEESTEEE-ETTB-SS-EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE
T ss_pred             hEEEEeeCCceEE-ECCCCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEC
Confidence            5778888887664 445456666677766553 44444    6889999999999999999887644

MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....

>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives)

Probab=89.54  E-value=0.98  Score=33.27  Aligned_cols=56  Identities=16%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             EEEEEEecCCCcc--ccccccCCeEEEEE------eCCCCCChhHHHHHHHHHhhcCCCCCceEEE
Q 033900           41 SITIHAKPGSKSC--SITDVSDEAVGVQI------DAPAKDGEANAALLEYMSSLIHVSVGEFVES   98 (109)
Q Consensus        41 ~L~V~VkP~Ak~~--~I~g~~~~~L~I~V------~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~   98 (109)
                      .|.|.+++.....  ....+  +-+.|.+      ...+.+.+..++|.++||+.|||++++|+..
T Consensus       124 ~I~v~l~~~~~~~~~~~~~V--e~V~I~~~~~~~~~~~~~~~~~~~~i~~~la~~~~i~~~~I~V~  187 (188)
T PF09581_consen  124 EIKVTLSEEEEQKEEAVEPV--EPVEIDIEKESDSSKSPEDSEEEEEIKQYLADFYGISPEQIKVY  187 (188)
T ss_pred             EEEEEEcCCCccccccCCcc--cceEecccccccccccccchHHHHHHHHHHHHHhCCCHHHeEEe
Confidence            4667777754322  11112  3344444      4566777889999999999999999999865

The C-terminal region of these proteins is poorly conserved.

>PTZ00397 macrophage migration inhibition factor-like protein; Provisional

Probab=83.30  E-value=9.6  Score=26.09  Aligned_cols=60  Identities=13%  Similarity=0.044  Sum_probs=38.5

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQV  101 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~  101 (109)
                      .+-|.+.|...-. +.+-++...-|+|+.-. ...+.|    ++|.++|++.||||+.+|-+.+.-
T Consensus        38 ~~~v~~~~~~~m~-f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~~  102 (116)
T PTZ00397         38 YIMSGYDYQKHMR-FGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIEFKD  102 (116)
T ss_pred             HEEEEEeCCceEE-ECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence            4555555554331 22445577777777433 333334    567788899999999999977654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	2e-12
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	9e-10

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A Length = 108

 Score = 57.5 bits (139), Expect = 2e-12
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 26 ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
          + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2  DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86 SLIHVS 91
              V+
Sbjct: 61 KQFRVA 66

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1 Length = 104

 Score = 50.5 bits (121), Expect = 9e-10
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSL 87
           C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5  DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Query: 88 IHVSV 92
              V
Sbjct: 64 FGRDV 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	99.92
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	99.87
3kan_A	117	D-dopachrome tautomerase; immune response, cytokin	89.55
3fwu_A	133	Macrophage migration inhibitory factor-like protei	83.11
3djh_A	114	Macrophage migration inhibitory factor; homotrimer	82.43
3fwt_A	133	Macrophage migration inhibitory factor-like protei	81.48
4dh4_A	114	MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}	80.7

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A

Probab=99.92  E-value=2.1e-25  Score=156.90  Aligned_cols=77  Identities=21%  Similarity=0.339  Sum_probs=73.4

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEE
Q 033900           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVF  102 (109)
Q Consensus        29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~  102 (109)
                      |+||++.++ +++|+|+|+|+|++++|.+++++.|+|+|+|||+||+||+||++|||+.||||+|+|+      .|.|++
T Consensus         5 m~~~~~~~~-~v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~Iv~G~tSR~K~v   83 (108)
T 1n91_A            5 MSAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQI   83 (108)
T ss_dssp             CCSEEECSS-EEEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEE
T ss_pred             cceEEECCC-eEEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEEEecCCCCccEE
Confidence            468888875 8999999999999999999999999999999999999999999999999999999999      789999


Q ss_pred             Eeec
Q 033900          103 FLNG  106 (109)
Q Consensus       103 ~~~g  106 (109)
                      .|.|
T Consensus        84 ~I~~   87 (108)
T 1n91_A           84 KIIN   87 (108)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            9988

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1

Probab=99.87  E-value=7.3e-23  Score=142.78  Aligned_cols=75  Identities=20%  Similarity=0.398  Sum_probs=70.2

Q ss_pred             CcceEeeCCCeEEEEEEEecCCCcccccccc--CCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEe
Q 033900           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQ  100 (109)
Q Consensus        29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~--~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~  100 (109)
                      ++||++.++ ++.|+|+|+|+|++++|.+++  ++.|+|+|+|||+||+||++|++|||+.||   |+|+      .|.|
T Consensus         4 m~~~~~~~~-~~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~l~---s~V~i~~G~tsR~K   79 (104)
T 1jrm_A            4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQK   79 (104)
T ss_dssp             CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEE
T ss_pred             chhEEECCC-cEEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCce
Confidence            579999886 899999999999999999965  999999999999999999999999999999   9999      7899


Q ss_pred             EEEeecc
Q 033900          101 VFFLNGF  107 (109)
Q Consensus       101 ~~~~~g~  107 (109)
                      ++.|.|.
T Consensus        80 ~v~I~~~   86 (104)
T 1jrm_A           80 TIRIQGM   86 (104)
T ss_dssp             EEEEESC
T ss_pred             EEEEcCC
Confidence            9999873

>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*

Probab=89.55  E-value=1.5  Score=29.38  Aligned_cols=63  Identities=8%  Similarity=0.203  Sum_probs=40.5

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCCC------ChhHHHHHHHHHhhcCCCCCceEEEEeEEEe
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKD------GEANAALLEYMSSLIHVSVGEFVESVQVFFL  104 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvd------GkAN~aLi~~LAk~L~Vpks~I~~~~~~~~~  104 (109)
                      .|.|.+.|+..- .+.|-.+...-+.|+.-..-      .+-.++|+++|.+.|||++++|-+.|.-+-=
T Consensus        36 ~vmV~v~~~~~m-~fgGs~~P~a~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d~~~  104 (117)
T 3kan_A           36 RVNVTVRPGLAM-ALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLES  104 (117)
T ss_dssp             GCEEEEECSCCC-CBTTBCSSCEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECG
T ss_pred             HEEEEEeCCCeE-EECCCCCceEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCH
Confidence            456777886544 23444444444444443322      3334678899999999999999998876643

>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}

Probab=83.11  E-value=4.5  Score=27.72  Aligned_cols=61  Identities=5%  Similarity=-0.012  Sum_probs=41.0

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQVF  102 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~  102 (109)
                      .+.|.+.|+..- -+.|-.+...-+.|+.-. .....|    ++|+++|.+.|||++.+|-+.|..+
T Consensus        58 ~vmV~~~~~~~m-~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d~  123 (133)
T 3fwu_A           58 LVMMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSP  123 (133)
T ss_dssp             GCEEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECC
T ss_pred             EEEEEEECCceE-EECCcCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEH
Confidence            456777775433 244445667777777643 333444    5678888889999999999887655

>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...

Probab=82.43  E-value=3.8  Score=26.89  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=39.5

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCCCCC-h----hHHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDG-E----ANAALLEYMSSLIHVSVGEFVESVQVF  102 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdG-k----AN~aLi~~LAk~L~Vpks~I~~~~~~~  102 (109)
                      .+.|.+.|+..- .+.|-.+...-+.|+.-..-+ .    --++|.++|.+.|||++++|-+.|..+
T Consensus        36 ~vmV~~~~~~~m-~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~  101 (114)
T 3djh_A           36 YIAVHVVPDQLM-AFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDM  101 (114)
T ss_dssp             GCEEEEECSCEE-EETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred             HeEEEEeCCceE-EEcCcCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEC
Confidence            556677776532 233434555555555544322 2    336788899999999999999887655

>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}

Probab=81.48  E-value=6.2  Score=26.97  Aligned_cols=61  Identities=5%  Similarity=-0.066  Sum_probs=39.1

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQVF  102 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~  102 (109)
                      .+.|.+.|+..- -+.|-.+...-+.|+.-. .....|    ++|+++|.+.|||++.+|-+.|..+
T Consensus        58 ~v~V~~~~~~~m-~fgGs~dP~a~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d~  123 (133)
T 3fwt_A           58 FVMTAFSDKTPI-SFQGSTAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVFYYST  123 (133)
T ss_dssp             CCEEEEECSCCC-CBTTBCSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred             EEEEEEECCceE-EECCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEh
Confidence            566677775443 234445556666666521 233333    5678888899999999999887655

>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}

Probab=80.70  E-value=7  Score=25.45  Aligned_cols=61  Identities=11%  Similarity=0.064  Sum_probs=37.5

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQVF  102 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~  102 (109)
                      .+.|.+.|+..- .+.|-.+...-+.|+.-. ...+.|    ++|.++|.+.|||++++|.+.+..+
T Consensus        37 ~v~V~~~~~~~m-~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d~  102 (114)
T 4dh4_A           37 YVMVGYSQTGQM-RFGGSSDPCAFIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYTTFTNK  102 (114)
T ss_dssp             GCEEEEEECSCC-CBTTBCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred             HEEEEEeCCceE-EECCcCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEeC
Confidence            456677776521 233334444444444332 222334    5677888889999999999988766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1yh5a1	100	d.206.1.1 (A:1-100) Hypothetical protein YggU {Esc	4e-12
d1jrma_	104	d.206.1.1 (A:) Hypothetical protein MTH637 {Archae	8e-11

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]} Length = 100

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

 Score = 55.5 bits (134), Expect = 4e-12
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 26 ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
          + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2  DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86 SLIHVSVGE 94
              V+  +
Sbjct: 61 KQFRVAKSQ 69

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 104

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 52.0 bits (125), Expect = 8e-11
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSL 87
           C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5  DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Query: 88 IHVSV 92
              V
Sbjct: 64 FGRDV 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1yh5a1	100	Hypothetical protein YggU {Escherichia coli, o157	99.9
d1jrma_	104	Hypothetical protein MTH637 {Archaeon Methanobacte	99.84
d1dpta_	117	D-dopachrome tautomerase {Human (Homo sapiens) [Ta	88.75
d1uiza_	115	Microphage migration inhibition factor (MIF) {Afri	86.02
d2gdga1	114	Microphage migration inhibition factor (MIF) {Mous	85.48
d1hfoa_	113	Microphage migration inhibition factor (MIF) {Tric	85.24

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

Probab=99.90  E-value=1.4e-24  Score=149.06  Aligned_cols=80  Identities=20%  Similarity=0.347  Sum_probs=75.3

Q ss_pred             CCCCcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEE
Q 033900           26 ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESV   99 (109)
Q Consensus        26 ~~~p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~   99 (109)
                      ..++++|++.++ ++.|.|+|+|+|++++|.++++++|+|+|+|||+||+||+||++|||++|+||+|+|+      .|-
T Consensus         2 ~~~~s~i~~~~~-gv~i~v~V~P~ak~~~i~~~~~~~l~v~v~app~~GkAN~ali~~Lak~l~v~ks~I~I~~G~tSr~   80 (100)
T d1yh5a1           2 DGVMSAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRH   80 (100)
T ss_dssp             CCCCCSEEECSS-EEEEEEECCBSCSSCCCCCCCSSCEECCBSSCSCTTTHHHHHHHHHHHHHTCCTTTEEEEECCSSSE
T ss_pred             CCcccceEEcCC-eEEEEEEEEeCCcccccccccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCCcccEEEEecCCCCc
Confidence            357899999886 8999999999999999999999999999999999999999999999999999999999      788


Q ss_pred             eEEEeec
Q 033900          100 QVFFLNG  106 (109)
Q Consensus       100 ~~~~~~g  106 (109)
                      |++.|.+
T Consensus        81 K~i~I~~   87 (100)
T d1yh5a1          81 KQIKIIN   87 (100)
T ss_dssp             EEEEEES
T ss_pred             eEEEEeC
Confidence            9998876

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=4.6e-22  Score=137.31  Aligned_cols=76  Identities=20%  Similarity=0.400  Sum_probs=70.3

Q ss_pred             CCcceEeeCCCeEEEEEEEecCCCccccccccC--CeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEE
Q 033900           28 LPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESV   99 (109)
Q Consensus        28 ~p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~   99 (109)
                      -++||++.++ +++|.|+|+|+|++++|.++++  ++|+|+|+|||+||+||+||++|||++|+   |+|+      +|.
T Consensus         3 t~~~l~~~~~-gv~i~v~V~P~A~~~~i~g~~~~~~~l~V~v~app~dGkAN~ali~~Lak~lk---s~I~I~~G~tSR~   78 (104)
T d1jrma_           3 TMDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQ   78 (104)
T ss_dssp             CCCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSE
T ss_pred             chHHHhccCC-eEEEEEEEeeCCCcceeeeecCCCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCc
Confidence            3689999986 8999999999999999998865  89999999999999999999999999995   8899      699


Q ss_pred             eEEEeecc
Q 033900          100 QVFFLNGF  107 (109)
Q Consensus       100 ~~~~~~g~  107 (109)
                      |++.|.|.
T Consensus        79 K~i~I~g~   86 (104)
T d1jrma_          79 KTIRIQGM   86 (104)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEeCC
Confidence            99999874

>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: D-dopachrome tautomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=0.44  Score=30.55  Aligned_cols=61  Identities=11%  Similarity=0.306  Sum_probs=43.0

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCC-----CCC-ChhHHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAP-----AKD-GEANAALLEYMSSLIHVSVGEFVESVQVF  102 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~Ap-----Pvd-GkAN~aLi~~LAk~L~Vpks~I~~~~~~~  102 (109)
                      .+.|.|.|+..-. +.|-++...-+.|++-     |++ .+--++|+++|.+.||||+++|-+.|..+
T Consensus        36 ~vmV~v~~~~~m~-fgGs~eP~a~~~l~sig~~~~~e~n~~~s~~i~~~l~~~LgI~~~RiyI~f~~~  102 (117)
T d1dpta_          36 RVNVTVRPGLAMA-LSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPL  102 (117)
T ss_dssp             GCEEEEECSCCCC-BTTBCSSCEEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred             HEEEEEEcCCceE-ECCCCCcEEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHcCCCcCeEEEEEEEC
Confidence            5778888887764 4444555555555542     332 24557789999999999999999888654

>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=86.02  E-value=0.56  Score=29.92  Aligned_cols=61  Identities=11%  Similarity=0.159  Sum_probs=42.0

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-----CCChhHHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-----KDGEANAALLEYMSSLIHVSVGEFVESVQVF  102 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-----vdGkAN~aLi~~LAk~L~Vpks~I~~~~~~~  102 (109)
                      .+.|.+.++..-. +.|-++...-+.|++--     .+.+-.++|+++|.+.||||.++|-+.|.-+
T Consensus        37 ~vmv~v~~~~~m~-fggs~~P~a~~~v~siG~l~~~~n~~~s~~i~~~l~~~LgI~~~Riyi~f~d~  102 (115)
T d1uiza_          37 YIAIHIVPDQIMS-FGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDL  102 (115)
T ss_dssp             GCEEEEECSCEEE-ETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred             HEEEEEcCCceEE-eCCCCCcEEEEEEEEEcCCChhhhHHHHHHHHHHHHHHcCCCcceEEEEEEEC
Confidence            5677888887654 44445555555555432     2234567799999999999999999887643

>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.48  E-value=1.3  Score=28.06  Aligned_cols=60  Identities=15%  Similarity=0.187  Sum_probs=41.1

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChh----HHHHHHHHHhhcCCCCCceEEEEeE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEA----NAALLEYMSSLIHVSVGEFVESVQV  101 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkA----N~aLi~~LAk~L~Vpks~I~~~~~~  101 (109)
                      .+-|.|.|+..-. +.|-++...-+.|++-- .+...    .++|+++|++.|||+..+|-+.|.-
T Consensus        36 ~vmV~v~~~~~m~-fgGs~~P~a~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~f~d  100 (114)
T d2gdga1          36 YIAVHVVPDQLMT-FSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYINYYD  100 (114)
T ss_dssp             GCEEEEECSCEEE-ETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred             HEEEEEeCCCCeE-EcCCCCCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEE
Confidence            5677888887653 44445555555555442 33333    4678999999999999999988764

>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}

class: Alpha and beta proteins (a+b)
fold: Tautomerase/MIF
superfamily: Tautomerase/MIF
family: MIF-related
domain: Microphage migration inhibition factor (MIF)
species: Trichinella spiralis [TaxId: 6334]

Probab=85.24  E-value=1.4  Score=27.83  Aligned_cols=60  Identities=7%  Similarity=0.098  Sum_probs=41.2

Q ss_pred             EEEEEEecCCCccccccccCCeEEEEEeCCC-CCC----hhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900           41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDG----EANAALLEYMSSLIHVSVGEFVESVQV  101 (109)
Q Consensus        41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdG----kAN~aLi~~LAk~L~Vpks~I~~~~~~  101 (109)
                      .|.|.+.++..-. +.|-++...-+.|++-- .+.    +--++|.++|.+.||||.++|-+.|..
T Consensus        36 ~vmV~v~~~~~m~-fgGs~eP~a~~~l~sig~l~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~f~d  100 (113)
T d1hfoa_          36 YVAVHINTDQQLS-FGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVN  100 (113)
T ss_dssp             GCEEEEECSCEEE-ETTBCSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred             HEEEEEcCCCcEE-EcCCCCcEEEEEEEEecCCChHHhHHHHHHHHHHHHHHcCCCcceEEEEEEE
Confidence            5777888887553 44445555555555442 233    344678999999999999999988764