Citrus Sinensis ID: 033923

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHNHLI
Secondary Structure (PSIPRED)
ccccccEEEEEEEEcccccccccccccccHHHHHHHHHHcccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHEEEHcccEEcccccHHHcccccccccccEEEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MAGEDLIELKFRladgadigpskfsptttVASLKEKIISrwpkekengpktvnnVQLIHAGkilednmtiaesrlpvvelpgtaiTMHVvlrpslpdkkggnthnhli
Flexible Loop (DISEMBL)
MAGEDLIELKFRladgadigpskfsptttvasLKEKIIsrwpkekengpktvnnVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVvlrpslpdkkggnthnhli
Low Complexity Region (SEG)
MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHNHLI
Disordered region (IsUnstruct)
********LKFRL***********************II************TVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR****************
Disordered Region (DISOPRED)
****DLI*LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKE**PKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH********************
Disordered Region (DISEMBL)
MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK*********
Disordered Region (DISPRO)
***EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSL*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHNHLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q8GWJ6	119	Membrane-anchored ubiquit	yes	no	0.972	0.882	0.688	4e-35
Q9SH14	120	Membrane-anchored ubiquit	no	no	0.972	0.875	0.635	1e-31
Q6Z8K4	119	Membrane-anchored ubiquit	yes	no	0.898	0.815	0.639	2e-31
Q9LSD8	120	Membrane-anchored ubiquit	no	no	0.851	0.766	0.543	2e-25
Q8LCS8	124	Membrane-anchored ubiquit	no	no	0.824	0.717	0.539	2e-24
Q75GT2	119	Membrane-anchored ubiquit	no	no	0.907	0.823	0.504	2e-24
Q9MAB9	117	Membrane-anchored ubiquit	no	no	0.861	0.794	0.537	3e-24
Q67UI2	126	Membrane-anchored ubiquit	no	no	0.879	0.753	0.515	1e-22
Q9SW27	118	Membrane-anchored ubiquit	no	no	0.916	0.838	0.474	9e-22
Q7XRU4	135	Membrane-anchored ubiquit	no	no	0.833	0.666	0.547	1e-21

>sp|Q8GWJ6|MUB6_ARATH Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 1   MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59
           MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 60  AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           AGKILE+N T+AESRLPV ELPG  ITMH+VLR    DKK     N
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQN 106

May serve as docking site to facilitate the association of other proteins to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH14|MUB5_ARATH Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/107 (63%), Positives = 82/107 (76%), Gaps = 2/107 (1%)

Query: 1   MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
           M  EDLIELKFRLADG DIGPSK+S   TVASLKEKII++WPK+KEN PK +N V+LI+ 
Sbjct: 1   MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60

Query: 61  GKILEDNMTIAESR--LPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           GKILE+N T++E+R  + + ELPG   TMHVVLRP L +KK     N
Sbjct: 61  GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQN 107

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z8K4|MUB3_ORYSJ Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 83/97 (85%)

Query: 2  AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61
           G++ IE+KFRL DG DIGPSK+ P+TTV++LKE I++RWP++KE  PKTVN+++LI+AG
Sbjct: 3  GGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAG 62

Query: 62 KILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 98
          +ILE+N T+AESR+PV E+PG  ITMHVV+RP  PDK
Sbjct: 63 RILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDK 99

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LSD8|MUB4_ARATH Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 74/92 (80%)

Query: 1  MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
          M  EDL+ELKFRL DG+D+GP ++SPT TV+ LKE+I+S WPK+K+  PK+ ++++LI+A
Sbjct: 1  MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60

Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLR 92
          GKILE+  T+A+ + P  +LP + ITMHVV++
Sbjct: 61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQ 92

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCS8|MUB2_ARATH Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 68/89 (76%)

Query: 4  EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI 63
          +D +E+KFRL DG+DIGP  F   TTVA+LKE ++++WP++KENGPKTV +V+LI AG+I
Sbjct: 5  KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64

Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLR 92
          LE+N T+ + R PV    G   TMHV+++
Sbjct: 65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQ 93

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GT2|MUB1_ORYSJ Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 76/101 (75%), Gaps = 3/101 (2%)

Query: 1   MAG--EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI 58
           M+G  ++  E+KFRL DG DIGP ++   +TVA+LKE I+++WPK+KE GP+TVN+++LI
Sbjct: 1   MSGGVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLI 60

Query: 59  HAGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
           +AGKILE+N T++E + P+ +  G   TMHVV+R    DK+
Sbjct: 61  NAGKILENNKTLSECKSPICDFSGLT-TMHVVVRAPTSDKQ 100

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MAB9|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query: 7   IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
           +E+KFRL DG+DIGP  F   TTV++LKE +IS WP+EKENGPKTV  V+LI AGK+LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 67  NMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
           + T+ + R PV  L G   TMHV+++  + +K+
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 100

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67UI2|MUB2_ORYSJ Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 71/95 (74%)

Query: 5   DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL 64
           + +E++FRL DG+DIGPS     TTV +LKE +++RWP+ KE  P+TVN+V +I+AG++L
Sbjct: 12  EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVL 71

Query: 65  EDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
           E+N T+AESR    E P   ITMHVV+R S P+++
Sbjct: 72  ENNRTLAESRNLAAESPEGPITMHVVVRRSRPERR 106

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 69/99 (69%)

Query: 1  MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
          M  E+ I++KFRL DG+DIGP ++S  +TV  LK++++S WPK K   PK +N V+LI +
Sbjct: 1  MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
          GKILE+N T+ + + P  ++ G  I MHVV++PSL   K
Sbjct: 61 GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSK 99

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XRU4|MUB4_ORYSJ Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 70/95 (73%), Gaps = 5/95 (5%)

Query: 10  KFRLADGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNM 68
           KFRL DG+DIGP + +   TTVA+LK+++++ WPK+K   PKT N+V+LI  GKILE++ 
Sbjct: 26  KFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDK 85

Query: 69  TIAESRLPVVELPGTAITMHVVLRPSL----PDKK 99
            IA+ R P  +LP TAITMHVV++PS     PDKK
Sbjct: 86  NIAQCRAPFGDLPSTAITMHVVVQPSSAKSKPDKK 120

May serve as docking site to facilitate the association of other proteins to the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
255545608	118	conserved hypothetical protein [Ricinus	0.907	0.830	0.755	4e-37
225459396	118	PREDICTED: membrane-anchored ubiquitin-f	0.907	0.830	0.734	2e-35
9280680	114	F2E2.12 [Arabidopsis thaliana]	0.944	0.894	0.718	2e-34
297845214	119	ubiquitin family protein [Arabidopsis ly	0.972	0.882	0.698	5e-34
302769982	120	hypothetical protein SELMODRAFT_231107 [	0.944	0.85	0.650	1e-33
15219188	119	membrane-anchored ubiquitin-fold protein	0.972	0.882	0.688	2e-33
297839649	119	hypothetical protein ARALYDRAFT_476952 [	0.972	0.882	0.650	2e-31
21592966	120	ubiquitin-fusion protein, putative [Arab	0.972	0.875	0.644	5e-31
4097587	118	NTGP5 [Nicotiana tabacum]	0.907	0.830	0.622	6e-31
15218145	120	membrane-anchored ubiquitin-fold protein	0.972	0.875	0.635	4e-30

>gi|255545608|ref|XP_002513864.1| conserved hypothetical protein [Ricinus communis] gi|223546950|gb|EEF48447.1| conserved hypothetical protein [Ricinus communis]

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 89/98 (90%)

Query: 1  MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
          MAGEDLIELKFRLADG DIGP+K++P TTV +LKEKII++WPK+KENGPKTVN+++LI+ 
Sbjct: 1  MAGEDLIELKFRLADGTDIGPNKYTPATTVVTLKEKIIAQWPKDKENGPKTVNDLKLING 60

Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 98
          GKILE+N T+AESRLPV ELPG  ITMHVVLRP +P+K
Sbjct: 61 GKILENNRTLAESRLPVGELPGGVITMHVVLRPPMPEK 98

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459396|ref|XP_002285815.1| PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Vitis vinifera] gi|302141907|emb|CBI19110.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/98 (73%), Positives = 89/98 (90%)

Query: 1  MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
          MAGE+LIELKFRLADG DIGP+K++PTT+V SLKEKI+++WPK+KENGPKT+N+++LI+A
Sbjct: 1  MAGEELIELKFRLADGTDIGPNKYNPTTSVGSLKEKILAQWPKDKENGPKTINDMKLINA 60

Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 98
          GKILE+N T+AESRL V ELPG  ITMHVV+RP L DK
Sbjct: 61 GKILENNRTLAESRLLVGELPGGVITMHVVVRPPLSDK 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9280680|gb|AAF86549.1|AC069252_8 F2E2.12 [Arabidopsis thaliana]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 88/103 (85%), Gaps = 1/103 (0%)

Query: 1   MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59
           MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 60  AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGN 102
           AGKILE+N T+AESRLPV ELPG  ITMH+VLR    DKK GN
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSGN 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845214|ref|XP_002890488.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata] gi|297336330|gb|EFH66747.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (372), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/106 (69%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 1   MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59
           MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 60  AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           AGKILE+N T+AESRLPV ELPG  ITMHVVLR    DKK     N
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMVITMHVVLRLPTLDKKSEKQQN 106

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302769982|ref|XP_002968410.1| hypothetical protein SELMODRAFT_231107 [Selaginella moellendorffii] gi|302774308|ref|XP_002970571.1| hypothetical protein SELMODRAFT_231614 [Selaginella moellendorffii] gi|300162087|gb|EFJ28701.1| hypothetical protein SELMODRAFT_231614 [Selaginella moellendorffii] gi|300164054|gb|EFJ30664.1| hypothetical protein SELMODRAFT_231107 [Selaginella moellendorffii]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 90/103 (87%), Gaps = 1/103 (0%)

Query: 2   AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61
           AG++L+ELKFRL+DG+DIGP K++P TT+A+LKE II++WP+EKENGPK+VN+++LI+AG
Sbjct: 4   AGQELLELKFRLSDGSDIGPYKYAPATTIATLKESIIAQWPQEKENGPKSVNDMKLINAG 63

Query: 62  KILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTH 104
           K+LE+N T++ESR+PV ELPG  ITMHVV+RP   D KGG  H
Sbjct: 64  KVLENNKTLSESRVPVGELPGGVITMHVVVRPPSTD-KGGEKH 105

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219188|ref|NP_173624.1| membrane-anchored ubiquitin-fold protein 6 [Arabidopsis thaliana] gi|75150987|sp|Q8GWJ6.1|MUB6_ARATH RecName: Full=Membrane-anchored ubiquitin-fold protein 6; Short=AtMUB6; Short=Membrane-anchored ub-fold protein 6; Flags: Precursor gi|26452618|dbj|BAC43392.1| unknown protein [Arabidopsis thaliana] gi|28973097|gb|AAO63873.1| unknown protein [Arabidopsis thaliana] gi|332192068|gb|AEE30189.1| membrane-anchored ubiquitin-fold protein 6 [Arabidopsis thaliana]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 1   MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59
           MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query: 60  AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           AGKILE+N T+AESRLPV ELPG  ITMH+VLR    DKK     N
Sbjct: 61  AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQN 106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839649|ref|XP_002887706.1| hypothetical protein ARALYDRAFT_476952 [Arabidopsis lyrata subsp. lyrata] gi|297333547|gb|EFH63965.1| hypothetical protein ARALYDRAFT_476952 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 1   MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
           M  ED IELKFRLADG DIGPSK+S   TVASLKEKII++WPK+KEN PK +N V+LI+ 
Sbjct: 1   MGDEDWIELKFRLADGTDIGPSKYSQLMTVASLKEKIIAQWPKDKENAPKLINEVKLING 60

Query: 61  GKILEDNMTIAESR-LPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           GKILE+N T++E+R LP+ ELPG   TMHVVLRP L +KK     N
Sbjct: 61  GKILENNTTLSEARSLPICELPGIVTTMHVVLRPPLFEKKKEKLQN 106

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592966|gb|AAM64915.1| ubiquitin-fusion protein, putative [Arabidopsis thaliana]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 83/107 (77%), Gaps = 2/107 (1%)

Query: 1   MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
           M  EDLIELKFRLADG DIGPSK+S   TVASLKEKII++WPK+KEN PK +N V+LI+ 
Sbjct: 1   MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60

Query: 61  GKILEDNMTIAESR--LPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           GKILE+N T++E+R  +P+ ELPG   TMHVVLRP L +KK     N
Sbjct: 61  GKILENNKTLSEARSLIPIGELPGIVTTMHVVLRPPLFEKKKEKLQN 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097587|gb|AAD00119.1| NTGP5 [Nicotiana tabacum]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 87/98 (88%)

Query: 1  MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
          MA E+L+E+KFRLADG+DIGP+K++ +TTV SLKEK++++WPK+K++GP+T N+V+LI+A
Sbjct: 1  MAVEELVEIKFRLADGSDIGPNKYASSTTVGSLKEKLMAQWPKDKDSGPRTTNDVKLINA 60

Query: 61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDK 98
          G+ILE++ T+ ESRLPV E+PG  ITMHVV+RP + DK
Sbjct: 61 GRILENSRTLGESRLPVAEVPGGVITMHVVVRPPIHDK 98

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218145|ref|NP_177910.1| membrane-anchored ubiquitin-fold protein 5 [Arabidopsis thaliana] gi|75205308|sp|Q9SH14.1|MUB5_ARATH RecName: Full=Membrane-anchored ubiquitin-fold protein 5; Short=AtMUB5; Short=Membrane-anchored ub-fold protein 5; Flags: Precursor gi|6573758|gb|AAF17678.1|AC009243_5 F28K19.8 [Arabidopsis thaliana] gi|332197916|gb|AEE36037.1| membrane-anchored ubiquitin-fold protein 5 [Arabidopsis thaliana]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/107 (63%), Positives = 82/107 (76%), Gaps = 2/107 (1%)

Query: 1   MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
           M  EDLIELKFRLADG DIGPSK+S   TVASLKEKII++WPK+KEN PK +N V+LI+ 
Sbjct: 1   MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60

Query: 61  GKILEDNMTIAESR--LPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           GKILE+N T++E+R  + + ELPG   TMHVVLRP L +KK     N
Sbjct: 61  GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQN 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2030616	119	MUB6 "AT1G22050" [Arabidopsis	0.962	0.873	0.700	1.5e-33
TAIR|locus:2029466	120	MUB5 "AT1G77870" [Arabidopsis	0.972	0.875	0.635	1.4e-30
TAIR|locus:2091975	120	MUB4 "AT3G26980" [Arabidopsis	0.916	0.825	0.533	9.7e-25
TAIR|locus:2102172	117	MUB1 "AT3G01050" [Arabidopsis	0.861	0.794	0.537	3.3e-24
TAIR|locus:2180937	124	MUB2 "AT5G15460" [Arabidopsis	0.888	0.774	0.510	3.3e-24
TAIR|locus:2117383	118	ATGP4 "AT4G24990" [Arabidopsis	0.916	0.838	0.474	3.9e-21
ZFIN|ZDB-GENE-030131-3431	117	ubl3a "ubiquitin-like 3a" [Dan	0.888	0.820	0.294	1.4e-07
UNIPROTKB|Q2TA46	117	UBL3 "Ubiquitin-like protein 3	0.888	0.820	0.274	7.8e-07
UNIPROTKB|O95164	117	UBL3 "Ubiquitin-like protein 3	0.888	0.820	0.274	7.8e-07
MGI|MGI:1344373	117	Ubl3 "ubiquitin-like 3" [Mus m	0.888	0.820	0.274	7.8e-07

TAIR|locus:2030616 MUB6 "AT1G22050" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 75/107 (70%), Positives = 90/107 (84%)

Query:     1 MAGE-DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH 59
             MAGE D IELKFRLADG DIGPSK++ + TV+SLKEK+IS+WPK+KEN PKTVN+++LI+
Sbjct:     1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLIN 60

Query:    60 AGKILEDNMTIAESRLPVVELPGTAITMHVVLR-PSLPDKKGGNTHN 105
             AGKILE+N T+AESRLPV ELPG  ITMH+VLR P+L DKK     N
Sbjct:    61 AGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTL-DKKSEKLQN 106

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2029466 MUB5 "AT1G77870" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 68/107 (63%), Positives = 82/107 (76%)

Query:     1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
             M  EDLIELKFRLADG DIGPSK+S   TVASLKEKII++WPK+KEN PK +N V+LI+ 
Sbjct:     1 MGDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLING 60

Query:    61 GKILEDNMTIAESR--LPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
             GKILE+N T++E+R  + + ELPG   TMHVVLRP L +KK     N
Sbjct:    61 GKILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQN 107

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2091975 MUB4 "AT3G26980" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 55/103 (53%), Positives = 79/103 (76%)

Query:     1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
             M  EDL+ELKFRL DG+D+GP ++SPT TV+ LKE+I+S WPK+K+  PK+ ++++LI+A
Sbjct:     1 MPEEDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINA 60

Query:    61 GKILEDNMTIAESRLPVVELPGTAITMHVV--LRPSL--PDKK 99
             GKILE+  T+A+ + P  +LP + ITMHVV  L P+   P+KK
Sbjct:    61 GKILENGKTVAQCKAPFDDLPKSVITMHVVVQLSPTKARPEKK 103

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2102172 MUB1 "AT3G01050" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query:     7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
             +E+KFRL DG+DIGP  F   TTV++LKE +IS WP+EKENGPKTV  V+LI AGK+LE+
Sbjct:     8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query:    67 NMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
             + T+ + R PV  L G   TMHV+++  + +K+
Sbjct:    68 SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 100

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2180937 MUB2 "AT5G15460" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 49/96 (51%), Positives = 72/96 (75%)

Query:     4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI 63
             +D +E+KFRL DG+DIGP  F   TTVA+LKE ++++WP++KENGPKTV +V+LI AG+I
Sbjct:     5 KDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRI 64

Query:    64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
             LE+N T+ + R PV    G   TMHV+++  + +K+
Sbjct:    65 LENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKE 100

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2117383 ATGP4 "AT4G24990" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 47/99 (47%), Positives = 69/99 (69%)

Query:     1 MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA 60
             M  E+ I++KFRL DG+DIGP ++S  +TV  LK++++S WPK K   PK +N V+LI +
Sbjct:     1 MPEEESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISS 60

Query:    61 GKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
             GKILE+N T+ + + P  ++ G  I MHVV++PSL   K
Sbjct:    61 GKILENNKTVGQCKTPFGDIAGGVIVMHVVVQPSLAKSK 99

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0010286 "heat acclimation" evidence=RCA

ZFIN|ZDB-GENE-030131-3431 ubl3a "ubiquitin-like 3a" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 30/102 (29%), Positives = 49/102 (48%)

Query:     5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
             D+I L+  L  G       FSP  + A + + +   WP + +E    + N V+LI+ G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSAADIAKHVYDNWPMDWEEEQVSSPNIVRLIYQGRF 66

Query:    64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
             L  N+T+   +LP+    G    MH+V R +LP+       N
Sbjct:    67 LHGNVTLGVLKLPL----GKTTVMHLVARETLPEPNSQGQRN 104

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q2TA46 UBL3 "Ubiquitin-like protein 3" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 28/102 (27%), Positives = 48/102 (47%)

Query:     5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
             D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+ G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
             L  N+T+   +LP     G    MH+V R +LP+       N
Sbjct:    67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 104

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|O95164 UBL3 "Ubiquitin-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 28/102 (27%), Positives = 48/102 (47%)

Query:     5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
             D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+ G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
             L  N+T+   +LP     G    MH+V R +LP+       N
Sbjct:    67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 104

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

MGI|MGI:1344373 Ubl3 "ubiquitin-like 3" [Mus musculus (taxid:10090)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 28/102 (27%), Positives = 48/102 (47%)

Query:     5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
             D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+ G+ 
Sbjct:     8 DMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 66

Query:    64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
             L  N+T+   +LP     G    MH+V R +LP+       N
Sbjct:    67 LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 104

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z8K4	MUB3_ORYSJ	No assigned EC number	0.6391	0.8981	0.8151	yes	no
Q8GWJ6	MUB6_ARATH	No assigned EC number	0.6886	0.9722	0.8823	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015285001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (118 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	6e-50
cd01814	113	cd01814, NTGP5, Ubiquitin-like NTGP5 and ATGP4	2e-44
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-06
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	2e-06
smart00213	72	smart00213, UBQ, Ubiquitin homologues	3e-05
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-05
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	5e-05
pfam10302	90	pfam10302, DUF2407, DUF2407 ubiquitin-like domain	3e-04
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	0.001
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	0.004

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score =  153 bits (388), Expect = 6e-50
 Identities = 62/101 (61%), Positives = 78/101 (77%)

Query: 5   DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKIL 64
           +LIELKFRL DG+DIGP +FSP TTVA LKEK++++WPK+KE GPK+ N+V+LI+AGKIL
Sbjct: 1   ELIELKFRLVDGSDIGPFRFSPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKIL 60

Query: 65  EDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           E+N T+ E RLP  E PG  I MHVV+RP LP+       N
Sbjct: 61  ENNKTLGECRLPAGETPGGVIVMHVVVRPPLPEPNSEKKRN 101

Length = 111

>gnl|CDD|176409 cd01814, NTGP5, Ubiquitin-like NTGP5 and ATGP4

 Score =  139 bits (352), Expect = 2e-44
 Identities = 57/96 (59%), Positives = 75/96 (78%)

Query: 4  EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI 63
          E+ IE+KFRL DG+DIGP ++   TTV  LKE+++S+WPK+KE GPKTVN V+LI AGKI
Sbjct: 2  EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKI 61

Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
          LE++ T+ E R PV ++ G  ITMHVV++P L DKK
Sbjct: 62 LENSKTVGECRSPVGDIAGGVITMHVVVQPPLADKK 97

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown. Length = 113

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 41.9 bits (99), Expect = 1e-06
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          SP  TVA LK KI ++               +LI+AGKIL+D+ T+++  +         
Sbjct: 15 SPDDTVAELKAKIAAKEGVP-------PEQQRLIYAGKILKDDKTLSDYGI------QDG 61

Query: 85 ITMHVVLR 92
           T+H+VLR
Sbjct: 62 STLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 41.8 bits (99), Expect = 2e-06
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 13/74 (17%)

Query: 21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL 80
            +  P+ TV+ LKEKI      +KE  P  V+  +LI +GK+LED+ T++E  +     
Sbjct: 9  TLEVDPSDTVSELKEKIE-----DKEGIP--VDQQRLIFSGKVLEDDTTLSEYGI----Q 57

Query: 81 PGTAITMHVVLRPS 94
           G+  T+H+VLR  
Sbjct: 58 DGS--TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72
          +  P+ TV+ LKEKI      E    P      +LI+ GK+LED+ T+A+
Sbjct: 16 EVKPSDTVSELKEKI-----AELTGIP--PEQQRLIYKGKVLEDDRTLAD 58

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL 75
           P  TV  LKEKI +   + K+  P  V   +LI++GKIL D+ T+ E ++
Sbjct: 18 EPDETVKELKEKIEAE--QGKDAYP--VAQQKLIYSGKILSDDKTVKEYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQ-LIHAGKILEDNMTIAESRL 75
            P  TVA LKEKI      E+E G       Q LI++GKIL+D+ T+ E ++
Sbjct: 17 VDPDDTVAELKEKI------EEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|220681 pfam10302, DUF2407, DUF2407 ubiquitin-like domain

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLP 76
           +TTVA LK+ I SR P+E  N       ++LI+AG++L D+  +A     
Sbjct: 22 RSTTVAWLKKLIRSRLPQELSN-----RRLRLIYAGRLLNDSSKLASILKL 67

This is a family of proteins found in fungi. The function is not known. This domain is related to the ubiquitin domain. Length = 90

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 11/69 (15%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
          F P  TV  +K  +     +EKE     V  ++LI++GK + D++ +++ ++    +PG+
Sbjct: 17 FEPDNTVQQVKMAL-----QEKEG--IDVKQIRLIYSGKQMSDDLKLSDYKV----VPGS 65

Query: 84 AITMHVVLR 92
           I M + LR
Sbjct: 66 TIHMVLQLR 74

Length = 76

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 33.3 bits (77), Expect = 0.004
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)

Query: 7  IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
          I +K +  DG ++   K  PTTT++ L           K+ G      V+LI  G+ L+ 
Sbjct: 1  IRIKLKGKDGKEVF-IKVKPTTTLSKLINAYR------KKRGIPADQQVRLIFDGERLDP 53

Query: 67 NMTIAE 72
          N T+A+
Sbjct: 54 NDTVAD 59

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.95
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	99.95
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.85
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.83
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.83
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.82
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.82
PTZ00044	76	ubiquitin; Provisional	99.82
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.81
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.81
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.8
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.8
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.8
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.78
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.78
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.77
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.77
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.77
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.76
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.75
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.74
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.72
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.69
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.68
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.67
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.66
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.65
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.61
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.6
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.58
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.56
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.56
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.51
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.46
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.38
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.33
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.23
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.23
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	99.19
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.12
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.94
PLN02560	308	enoyl-CoA reductase	98.86
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.8
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.78
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.7
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	98.64
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.41
KOG4583	391	consensus Membrane-associated ER protein involved	98.4
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.33
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.17
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	98.16
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	98.07
KOG0013	231	consensus Uncharacterized conserved protein [Funct	97.83
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.82
KOG4495	110	consensus RNA polymerase II transcription elongati	97.78
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.7
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	97.66
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.48
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	97.45
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	97.43
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	97.43
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.3
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.17
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	97.12
COG5417	81	Uncharacterized small protein [Function unknown]	97.02
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	96.76
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	96.68
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	95.77
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	95.35
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	95.25
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.16
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	94.85
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	93.95
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	91.88
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	91.51
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	91.46
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	91.33
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	91.0
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	89.88
smart00455	70	RBD Raf-like Ras-binding domain.	88.05
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	88.05
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	86.53
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	86.3
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	85.38
PF08337	539	Plexin_cytopl: Plexin cytoplasmic RasGAP domain; I	84.43
KOG1639	297	consensus Steroid reductase required for elongatio	83.26
PF08783	74	DWNN: DWNN domain; InterPro: IPR014891 The ~75-res	83.2
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	81.77
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	81.08
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	80.37
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	80.06

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.95  E-value=2.9e-28  Score=165.03  Aligned_cols=103  Identities=55%  Similarity=0.909  Sum_probs=95.2

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +++.+.|+||+.+|.++.|+.+++++||++||++|++.||.+|+..|..+++|||||+||+|+|+.||++|+++-++.+.
T Consensus         1 ~~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~   80 (113)
T cd01814           1 VEEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAG   80 (113)
T ss_pred             CCccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCC
Confidence            47899999999999999999999999999999999999988777667668999999999999999999999999888888


Q ss_pred             cceEEEEEecCCCCCCCCCCCCC
Q 033923           83 TAITMHVVLRPSLPDKKGGNTHN  105 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~~~~~~~~  105 (108)
                      ..+|||||+|++.+.++..++++
T Consensus        81 ~~~TmHvvlr~~~~~~~~~k~~~  103 (113)
T cd01814          81 GVITMHVVVQPPLADKKTEKKVD  103 (113)
T ss_pred             CceEEEEEecCCCCCcccccccc
Confidence            88999999999999999887764

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=99.95  E-value=4.4e-27  Score=159.64  Aligned_cols=99  Identities=53%  Similarity=0.904  Sum_probs=82.9

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      +.|.|+||+.+|+++.++.+++++||++||++|+++||.+|+..|.+++.+||||+||+|+|+.+|++|+++.++.+..+
T Consensus         1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~   80 (111)
T PF13881_consen    1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP   80 (111)
T ss_dssp             TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred             CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence            47899999999998888999999999999999999999999877888999999999999999999999999998876677


Q ss_pred             eEEEEEecCCCCCCCCCCC
Q 033923           85 ITMHVVLRPSLPDKKGGNT  103 (108)
Q Consensus        85 ~tvhlv~~~~~~~~~~~~~  103 (108)
                      ++|||++++....++++++
T Consensus        81 ~vmHlvvrp~~~~~~~~~~   99 (111)
T PF13881_consen   81 TVMHLVVRPNAPEPNEEKK   99 (111)
T ss_dssp             EEEEEEE-SSSSSSSSSS-
T ss_pred             EEEEEEecCCCCCcccccc
Confidence            8999999999888877665

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.85  E-value=4.5e-21  Score=120.49  Aligned_cols=74  Identities=20%  Similarity=0.356  Sum_probs=69.9

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||+.+|+++. +++++++||++||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|++++      +
T Consensus         1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~~~g----i~---~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~   66 (74)
T cd01807           1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSEHLN----VP---EEQQRLLFKGKALADDKRLSDYSIGPNA------K   66 (74)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHeEEEECCEECCCCCCHHHCCCCCCC------E
Confidence            47899999999988 999999999999999999998    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCC
Q 033923           87 MHVVLRPS   94 (108)
Q Consensus        87 vhlv~~~~   94 (108)
                      +||+++++
T Consensus        67 l~l~~~~~   74 (74)
T cd01807          67 LNLVVRPP   74 (74)
T ss_pred             EEEEEcCC
Confidence            99999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.83  E-value=2.5e-20  Score=117.24  Aligned_cols=74  Identities=22%  Similarity=0.181  Sum_probs=67.5

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||.  ++++. +++++++||++||++|++..+    +|   +++|||||+||.|+|+.+|++|+|++++      +
T Consensus         1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~~~~g----ip---~~~q~Li~~Gk~L~D~~tL~~~~i~~~~------t   64 (74)
T cd01793           1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVAGLEG----ID---VEDQVLLLAGVPLEDDATLGQCGVEELC------T   64 (74)
T ss_pred             CEEEEEC--CCEEE-EEECCcCcHHHHHHHHHhhhC----CC---HHHEEEEECCeECCCCCCHHHcCCCCCC------E
Confidence            4688887  46676 999999999999999999998    88   9999999999999999999999999987      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++++.+++
T Consensus        65 l~l~~~l~GG   74 (74)
T cd01793          65 LEVAGRLLGG   74 (74)
T ss_pred             EEEEEecCCC
Confidence            9999998764

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.83  E-value=1.8e-20  Score=120.37  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             eEEEEEEeCCCCeee-eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC--CCCCCCCC
Q 033923            6 LIELKFRLADGADIG-PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR--LPVVELPG   82 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~-~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~--i~~~~~~~   82 (108)
                      .|.|.||.++|+... .+++++++||++||++|++..+.    .|+ +++|||||+||+|+|+.+|++|.  ++++.   
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~----~~~-~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~---   72 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPS----KPL-EQDQRLIYSGKLLPDHLKLRDVLRKQDEYH---   72 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCC----CCC-hhHeEEEEcCeeccchhhHHHHhhcccCCc---
Confidence            378999999999844 15568999999999999998763    122 79999999999999999999996  87765   


Q ss_pred             cceEEEEEec
Q 033923           83 TAITMHVVLR   92 (108)
Q Consensus        83 ~~~tvhlv~~   92 (108)
                         +||||+.
T Consensus        73 ---tiHLV~~   79 (79)
T cd01790          73 ---MVHLVCA   79 (79)
T ss_pred             ---eEEEEeC
Confidence               9999973

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.82  E-value=7.9e-20  Score=122.41  Aligned_cols=78  Identities=27%  Similarity=0.216  Sum_probs=73.3

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      +.++|+||..+|+++. +++++++||++||++|++.++    ++   +++|||+|+||.|+|+.+|++|+|.+++     
T Consensus        26 ~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dy~I~~~s-----   92 (103)
T cd01802          26 DTMELFIETLTGTCFE-LRVSPFETVISVKAKIQRLEG----IP---VAQQHLIWNNMELEDEYCLNDYNISEGC-----   92 (103)
T ss_pred             CCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---hHHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence            4689999999999998 999999999999999999998    88   9999999999999999999999999997     


Q ss_pred             eEEEEEecCCCC
Q 033923           85 ITMHVVLRPSLP   96 (108)
Q Consensus        85 ~tvhlv~~~~~~   96 (108)
                       ++|++++.+++
T Consensus        93 -tL~l~~~l~GG  103 (103)
T cd01802          93 -TLKLVLAMRGG  103 (103)
T ss_pred             -EEEEEEecCCC
Confidence             99999998763

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.82  E-value=4.8e-20  Score=115.54  Aligned_cols=70  Identities=24%  Similarity=0.358  Sum_probs=65.6

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH   88 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh   88 (108)
                      ++||+.+|+++. +++++++||++||++|++..+    ++   +++|||||+|+.|+|+.+|++|+|.++.      ++|
T Consensus         1 ~~vk~~~G~~~~-l~v~~~~TV~~lK~~I~~~~g----i~---~~~q~Li~~G~~L~D~~~l~~~~i~~~~------tv~   66 (70)
T cd01794           1 LKVRLSTGKDVK-LSVSSKDTVGQLKKQLQAAEG----VD---PCCQRWFFSGKLLTDKTRLQETKIQKDY------VVQ   66 (70)
T ss_pred             CeEEcCCCCEEE-EEECCcChHHHHHHHHHHHhC----CC---HHHeEEEECCeECCCCCCHHHcCCCCCC------EEE
Confidence            578999999998 999999999999999999988    78   8999999999999999999999999886      999


Q ss_pred             EEec
Q 033923           89 VVLR   92 (108)
Q Consensus        89 lv~~   92 (108)
                      |++.
T Consensus        67 ~~~~   70 (70)
T cd01794          67 VIVN   70 (70)
T ss_pred             EEeC
Confidence            9873

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>PTZ00044 ubiquitin; Provisional

Probab=99.82  E-value=9.6e-20  Score=114.38  Aligned_cols=76  Identities=21%  Similarity=0.356  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||+.+|+++. +++++++||++||++|++..+    ++   +++|||+|+|+.|+|+.+|++|++++++      +
T Consensus         1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~~~g----i~---~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~   66 (76)
T PTZ00044          1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQEKEG----ID---VKQIRLIYSGKQMSDDLKLSDYKVVPGS------T   66 (76)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHeEEEECCEEccCCCcHHHcCCCCCC------E
Confidence            47999999999998 999999999999999999999    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++++.+++
T Consensus        67 i~l~~~~~gg   76 (76)
T PTZ00044         67 IHMVLQLRGG   76 (76)
T ss_pred             EEEEEEccCC
Confidence            9999997653

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.81  E-value=1.1e-19  Score=116.03  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=69.0

Q ss_pred             EEEEEEeCCCCe-eeeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            7 IELKFRLADGAD-IGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         7 i~i~~r~~~g~~-~~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ++|+||+..|++ +. ++ +++++||++||++|++..+    ++   +++|||||+||.|+|+.+|++|+|++++     
T Consensus         1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~~~~g----i~---~~~QrLi~~Gk~L~D~~tL~~y~i~~~~-----   67 (78)
T cd01797           1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQELFN----VE---PECQRLFYRGKQMEDGHTLFDYNVGLND-----   67 (78)
T ss_pred             CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHHHHhC----CC---HHHeEEEeCCEECCCCCCHHHcCCCCCC-----
Confidence            479999999997 45 85 8999999999999999988    88   9999999999999999999999999997     


Q ss_pred             eEEEEEecCCC
Q 033923           85 ITMHVVLRPSL   95 (108)
Q Consensus        85 ~tvhlv~~~~~   95 (108)
                       ++|+++++..
T Consensus        68 -~i~l~~~~~~   77 (78)
T cd01797          68 -IIQLLVRQDP   77 (78)
T ss_pred             -EEEEEEecCC
Confidence             9999999764

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.81  E-value=1.2e-19  Score=114.05  Aligned_cols=74  Identities=24%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH   88 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh   88 (108)
                      |+||+..|+++. +++++++||++||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|++++      ++|
T Consensus         1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----i~---~~~q~L~~~G~~L~D~~tL~~~~i~~~~------tl~   66 (74)
T cd01810           1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQRER----VQ---ADQFWLSFEGRPMEDEHPLGEYGLKPGC------TVF   66 (74)
T ss_pred             CEEECCCCCEEE-EEECCcChHHHHHHHHHHHhC----CC---HHHeEEEECCEECCCCCCHHHcCCCCCC------EEE
Confidence            689999999998 999999999999999999988    88   9999999999999999999999999997      999


Q ss_pred             EEecCCCC
Q 033923           89 VVLRPSLP   96 (108)
Q Consensus        89 lv~~~~~~   96 (108)
                      ++.+..++
T Consensus        67 l~~~l~gg   74 (74)
T cd01810          67 MNLRLRGG   74 (74)
T ss_pred             EEEEccCC
Confidence            99987653

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.80  E-value=1.9e-19  Score=111.86  Aligned_cols=70  Identities=29%  Similarity=0.380  Sum_probs=66.2

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH   88 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh   88 (108)
                      |+||+.+|.++. +++++++||++||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++      ++|
T Consensus         1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----i~---~~~q~Li~~G~~L~d~~~l~~~~i~~~s------tl~   66 (70)
T cd01798           1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVAKRQG----VP---PDQLRVIFAGKELRNTTTIQECDLGQQS------ILH   66 (70)
T ss_pred             CEEEcCCCCEEE-EEECCCChHHHHHHHHHHHHC----CC---HHHeEEEECCeECCCCCcHHHcCCCCCC------EEE
Confidence            578999999998 999999999999999999998    77   8999999999999999999999999997      999


Q ss_pred             EEec
Q 033923           89 VVLR   92 (108)
Q Consensus        89 lv~~   92 (108)
                      |+.|
T Consensus        67 l~~~   70 (70)
T cd01798          67 AVRR   70 (70)
T ss_pred             EEeC
Confidence            9975

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.80  E-value=2.8e-19  Score=113.04  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      ++.|+|+...|+.+. +++++++||++||++|++..+    ++   +++|||||+|++|+|+.+|++|+|.+++      
T Consensus         1 ~~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~~~----~~---~~~qrLi~~Gk~L~D~~tL~~ygi~~~s------   66 (73)
T cd01791           1 MIEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQTG----TR---PEKIVLKKWYTIFKDHISLGDYEIHDGM------   66 (73)
T ss_pred             CEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---hHHEEEEeCCcCCCCCCCHHHcCCCCCC------
Confidence            478999999999998 999999999999999999988    78   9999999999999999999999999997      


Q ss_pred             EEEEE
Q 033923           86 TMHVV   90 (108)
Q Consensus        86 tvhlv   90 (108)
                      ++||-
T Consensus        67 tv~l~   71 (73)
T cd01791          67 NLELY   71 (73)
T ss_pred             EEEEE
Confidence            99985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.80  E-value=5.2e-19  Score=110.34  Aligned_cols=76  Identities=25%  Similarity=0.326  Sum_probs=70.8

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||++||++|++..+    ++   ++.|||+|+|+.|.|+.+|++|++++++      +
T Consensus         1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----~~---~~~qrL~~~g~~L~d~~tl~~~~i~~g~------~   66 (76)
T cd01806           1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDDKTAADYKLEGGS------V   66 (76)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHhhC----CC---hhhEEEEECCeEccCCCCHHHcCCCCCC------E
Confidence            47899999999998 999999999999999999988    78   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++++.+++
T Consensus        67 i~l~~~~~gg   76 (76)
T cd01806          67 LHLVLALRGG   76 (76)
T ss_pred             EEEEEEccCC
Confidence            9999987653

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.78  E-value=1.1e-18  Score=108.79  Aligned_cols=76  Identities=28%  Similarity=0.374  Sum_probs=70.9

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||..+|+++. +++++++||++||++|++..+    ++   ++.|||+|+|+.|+|+.+|++|++++++      +
T Consensus         1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----~~---~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~   66 (76)
T cd01803           1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (76)
T ss_pred             CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHHhC----CC---HHHeEEEECCEECCCCCcHHHcCCCCCC------E
Confidence            47899999999998 999999999999999999998    77   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++++.+++
T Consensus        67 i~l~~~~~gg   76 (76)
T cd01803          67 LHLVLRLRGG   76 (76)
T ss_pred             EEEEEEccCC
Confidence            9999997764

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.78  E-value=1.8e-18  Score=110.17  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=69.5

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+...|+.+. +++++++||++||++|+++.+    ++   +++|||+|+|+.|+|+ +|++||+.+++      +
T Consensus         2 m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~~----~~---~~~qrL~~~Gk~L~d~-~L~~~gi~~~~------~   66 (78)
T cd01804           2 MNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQRLK----VP---KERLALLHRETRLSSG-KLQDLGLGDGS------K   66 (78)
T ss_pred             eEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHHhC----CC---hHHEEEEECCcCCCCC-cHHHcCCCCCC------E
Confidence            68999999999987 999999999999999999987    77   8999999999999998 99999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++....++
T Consensus        67 i~l~~~~~~~   76 (78)
T cd01804          67 LTLVPTVEAG   76 (78)
T ss_pred             EEEEeecccc
Confidence            9999987654

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.77  E-value=2.1e-18  Score=107.50  Aligned_cols=71  Identities=23%  Similarity=0.383  Sum_probs=65.1

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      +.|+|+...|. .. +++++++||++||++|++.++    ++   +++|||+|+||.|+|+.+|++|++++++      +
T Consensus         1 ~~i~vk~~~g~-~~-l~v~~~~TV~~lK~~I~~~~~----i~---~~~~~Li~~Gk~L~d~~tL~~~~i~~~s------t   65 (71)
T cd01808           1 IKVTVKTPKDK-EE-IEIAEDASVKDFKEAVSKKFK----AN---QEQLVLIFAGKILKDTDTLTQHNIKDGL------T   65 (71)
T ss_pred             CEEEEEcCCCC-EE-EEECCCChHHHHHHHHHHHhC----CC---HHHEEEEECCeEcCCCCcHHHcCCCCCC------E
Confidence            46889999997 45 999999999999999999998    77   8999999999999999999999999997      9


Q ss_pred             EEEEec
Q 033923           87 MHVVLR   92 (108)
Q Consensus        87 vhlv~~   92 (108)
                      +|++++
T Consensus        66 l~l~~~   71 (71)
T cd01808          66 VHLVIK   71 (71)
T ss_pred             EEEEEC
Confidence            999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.77  E-value=2.5e-18  Score=106.24  Aligned_cols=72  Identities=32%  Similarity=0.398  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|.++. +++++++||++||++|++.++    ++   ++.|||+|+|+.|+|+.+|++|++.+++      +
T Consensus         1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----i~---~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~   66 (72)
T cd01809           1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEEVG----IP---VEQQRLIYSGRVLKDDETLSEYKVEDGH------T   66 (72)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCEECCCcCcHHHCCCCCCC------E
Confidence            57899999999987 999999999999999999998    77   8999999999999999999999999997      9


Q ss_pred             EEEEec
Q 033923           87 MHVVLR   92 (108)
Q Consensus        87 vhlv~~   92 (108)
                      +|++.+
T Consensus        67 l~l~~~   72 (72)
T cd01809          67 IHLVKR   72 (72)
T ss_pred             EEEEeC
Confidence            999875

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.77  E-value=3e-18  Score=107.64  Aligned_cols=74  Identities=27%  Similarity=0.374  Sum_probs=68.0

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ++|+||..+|+++. +++++++||++||++|++.++    +  +   +++|||+|+|+.|+|+.+|++|++++++     
T Consensus         1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~~----i~~~---~~~q~L~~~G~~L~d~~~L~~~~i~~~~-----   67 (77)
T cd01805           1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEEKG----CDYP---PEQQKLIYSGKILKDDTTLEEYKIDEKD-----   67 (77)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhC----CCCC---hhHeEEEECCEEccCCCCHHHcCCCCCC-----
Confidence            47899999999998 999999999999999999998    6  6   8999999999999999999999999997     


Q ss_pred             eEEEEEecCC
Q 033923           85 ITMHVVLRPS   94 (108)
Q Consensus        85 ~tvhlv~~~~   94 (108)
                       +++++++.+
T Consensus        68 -~i~~~~~~~   76 (77)
T cd01805          68 -FVVVMVSKP   76 (77)
T ss_pred             -EEEEEEecC
Confidence             888887653

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.76  E-value=2.4e-18  Score=105.93  Aligned_cols=69  Identities=29%  Similarity=0.414  Sum_probs=64.6

Q ss_pred             EeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEe
Q 033923           12 RLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVL   91 (108)
Q Consensus        12 r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~   91 (108)
                      |+.+|+++. +++++++||++||++|+...+    ++   ++.|||+|+|+.|+|+.+|++|+|.+++      +||+++
T Consensus         1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~----~~---~~~~~L~~~G~~L~d~~tL~~~~i~~~~------~I~l~~   66 (69)
T PF00240_consen    1 KTLSGKTFT-LEVDPDDTVADLKQKIAEETG----IP---PEQQRLIYNGKELDDDKTLSDYGIKDGS------TIHLVI   66 (69)
T ss_dssp             EETTSEEEE-EEEETTSBHHHHHHHHHHHHT----ST---GGGEEEEETTEEESTTSBTGGGTTSTTE------EEEEEE
T ss_pred             CCCCCcEEE-EEECCCCCHHHhhhhcccccc----cc---cccceeeeeeecccCcCcHHHcCCCCCC------EEEEEE
Confidence            568899888 999999999999999999999    78   9999999999999999999999999997      999999


Q ss_pred             cCC
Q 033923           92 RPS   94 (108)
Q Consensus        92 ~~~   94 (108)
                      +++
T Consensus        67 k~~   69 (69)
T PF00240_consen   67 KPR   69 (69)
T ss_dssp             SSE
T ss_pred             ecC
Confidence            864

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.75  E-value=8.1e-18  Score=107.34  Aligned_cols=74  Identities=19%  Similarity=0.305  Sum_probs=69.3

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE--EEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL--Iy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ++|+|+...|+++. +++++++||++||++|++..+    ++   +++|||  +|.|+.|.|+.+|++|++.+++     
T Consensus         3 ~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~~~----i~---~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs-----   69 (80)
T cd01792           3 WDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQKIG----VP---AFQQRLAHLDSREVLQDGVPLVSQGLGPGS-----   69 (80)
T ss_pred             eEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHHhC----CC---HHHEEEEeccCCCCCCCCCCHHHcCCCCCC-----
Confidence            78999999999998 999999999999999999998    77   899999  9999999999999999999997     


Q ss_pred             eEEEEEecCC
Q 033923           85 ITMHVVLRPS   94 (108)
Q Consensus        85 ~tvhlv~~~~   94 (108)
                       ++||+++..
T Consensus        70 -~l~l~~~~~   78 (80)
T cd01792          70 -TVLLVVQNC   78 (80)
T ss_pred             -EEEEEEEcc
Confidence             899998743

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.74  E-value=6.7e-18  Score=106.78  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=66.6

Q ss_pred             CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEecC
Q 033923           14 ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        14 ~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~~   93 (108)
                      .+|+++. +++++++||++||++|+...+    +|   ++.|||+|+|+.|+|+.+|++|++.+++      ++|++++.
T Consensus         5 l~g~~~~-l~v~~~~TV~~lK~~i~~~~g----ip---~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~   70 (76)
T cd01800           5 LNGQMLN-FTLQLSDPVSVLKVKIHEETG----MP---AGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE   70 (76)
T ss_pred             cCCeEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence            4678887 999999999999999999998    88   8999999999999999999999999997      99999999


Q ss_pred             CCCCCC
Q 033923           94 SLPDKK   99 (108)
Q Consensus        94 ~~~~~~   99 (108)
                      +++.++
T Consensus        71 ~gg~~~   76 (76)
T cd01800          71 RGGRKK   76 (76)
T ss_pred             CCCcCC
Confidence            887664

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.72  E-value=2.1e-17  Score=103.43  Aligned_cols=67  Identities=16%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             EEEEeC-CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCCCCCCcceE
Q 033923            9 LKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         9 i~~r~~-~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~~~~~~~~t   86 (108)
                      |+|++. .|+++. +++++++||++||++|++..+    +|   +++|||+|+||.|+|+ .+|++|+|++++      +
T Consensus         1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~~~~g----ip---~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~------~   66 (71)
T cd01796           1 ITVYTARSETTFS-LDVDPDLELENFKALCEAESG----IP---ASQQQLIYNGRELVDNKRLLALYGVKDGD------L   66 (71)
T ss_pred             CEEEECCCCCEEE-EEECCcCCHHHHHHHHHHHhC----CC---HHHeEEEECCeEccCCcccHHHcCCCCCC------E
Confidence            578888 899887 999999999999999999998    88   8999999999999987 689999999997      8


Q ss_pred             EEE
Q 033923           87 MHV   89 (108)
Q Consensus        87 vhl   89 (108)
                      +||
T Consensus        67 l~l   69 (71)
T cd01796          67 VVL   69 (71)
T ss_pred             EEE
Confidence            876

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2.1e-17  Score=100.97  Aligned_cols=69  Identities=28%  Similarity=0.346  Sum_probs=65.5

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM   87 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv   87 (108)
                      -|++++++|+.+. ++++|+++|..+|++|+++.|    +|   |.+|||||+||.|.|+.+.++|++.-|+      ++
T Consensus         2 ~iKvktLt~KeIe-idIep~DkverIKErvEEkeG----IP---p~qqrli~~gkqm~DD~tA~~Y~~~~GS------Vl   67 (70)
T KOG0005|consen    2 LIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYAGKQMNDDKTAAHYNLLGGS------VL   67 (70)
T ss_pred             eeeEeeeccceEE-EeeCcchHHHHHHHHhhhhcC----CC---chhhhhhhccccccccccHHHhhhccce------eE
Confidence            5889999999998 999999999999999999999    99   8999999999999999999999999886      89


Q ss_pred             EEE
Q 033923           88 HVV   90 (108)
Q Consensus        88 hlv   90 (108)
                      |++
T Consensus        68 Hlv   70 (70)
T KOG0005|consen   68 HLV   70 (70)
T ss_pred             eeC
Confidence            985

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=2.4e-17  Score=116.95  Aligned_cols=83  Identities=27%  Similarity=0.328  Sum_probs=77.6

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|....|+++. +++.+++||..+|++|++..+    ||   +++|||||+|+.|+|..+|+||+|+..+      |
T Consensus         1 m~ifVk~l~~kti~-~eve~~~ti~~~Kakiq~~eg----Ip---~dqqrlifag~qLedgrtlSDY~Iqkes------t   66 (156)
T KOG0004|consen    1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (156)
T ss_pred             Cccchhhcccccee-eeecccccHHHHHHhhhcccC----CC---chhhhhhhhhcccccCCccccccccccc------e
Confidence            36889999999998 999999999999999999998    99   9999999999999999999999999886      9


Q ss_pred             EEEEecCCCCCCCCCCC
Q 033923           87 MHVVLRPSLPDKKGGNT  103 (108)
Q Consensus        87 vhlv~~~~~~~~~~~~~  103 (108)
                      +||+++.+++.++.+++
T Consensus        67 l~l~l~l~Gg~kkrkkk   83 (156)
T KOG0004|consen   67 LHLVLRLRGGAKKRKKK   83 (156)
T ss_pred             EEEEEEecCCccccccc
Confidence            99999999998888774

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.67  E-value=1.1e-15  Score=99.18  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=75.4

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      .....|+|+|+..+|+.+. +++.+++++..||+++++..+    ++   +++|||+|.|+.|.|+.|+++|++.+++  
T Consensus         7 ~~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~~~~g----i~---~~~~rf~f~G~~L~~~~T~~~l~m~d~d--   76 (87)
T cd01763           7 EISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYCQRQG----LS---MNSVRFLFDGQRIRDNQTPDDLGMEDGD--   76 (87)
T ss_pred             CCCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHHHHhC----CC---ccceEEEECCeECCCCCCHHHcCCCCCC--
Confidence            3467899999999999998 999999999999999999998    77   8999999999999999999999999998  


Q ss_pred             CcceEEEEEecCCCC
Q 033923           82 GTAITMHVVLRPSLP   96 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~   96 (108)
                          ++|++++..++
T Consensus        77 ----~I~v~l~l~GG   87 (87)
T cd01763          77 ----EIEVMLEQTGG   87 (87)
T ss_pred             ----EEEEEEecccC
Confidence                99999988764

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.66  E-value=5.2e-16  Score=95.78  Aligned_cols=70  Identities=19%  Similarity=0.189  Sum_probs=63.6

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      |+|+||.. |.... +++++++||++||++|+...+    ++   ++.|||+|+|+.|.|+.+|++|++.+|+      +
T Consensus         1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~~~~g----i~---~~~q~L~~~g~~l~d~~~L~~~~i~~g~------~   65 (71)
T cd01812           1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLAPVTG----VE---PRDQKLIFKGKERDDAETLDMSGVKDGS------K   65 (71)
T ss_pred             CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHHHhhC----CC---hHHeEEeeCCcccCccCcHHHcCCCCCC------E
Confidence            46888887 87776 999999999999999999998    78   8999999999999999999999999997      8


Q ss_pred             EEEEe
Q 033923           87 MHVVL   91 (108)
Q Consensus        87 vhlv~   91 (108)
                      +|++.
T Consensus        66 l~v~~   70 (71)
T cd01812          66 VMLLE   70 (71)
T ss_pred             EEEec
Confidence            88864

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.4e-17  Score=112.34  Aligned_cols=75  Identities=29%  Similarity=0.372  Sum_probs=71.1

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM   87 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv   87 (108)
                      ++++....|+++. ++++|++||..||++|...+|    ++   +++|||||+||+|+|..||++|+|+..+      |+
T Consensus         2 ~~~~~~~~GKT~~-le~EpS~ti~~vKA~i~~~~G----i~---~~~~~L~~~~k~LED~~Tla~Y~i~~~~------Tl   67 (128)
T KOG0003|consen    2 QIFVKTLTGKTIT-LEVEPSDTIDNVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLADYNIQKES------TL   67 (128)
T ss_pred             cEEEEEeeCceEE-EEecccchHHHHHHHhccccC----CC---HHHHHHHhcccccccCCcccccCccchh------hh
Confidence            5788889999998 999999999999999999999    88   9999999999999999999999999887      99


Q ss_pred             EEEecCCCC
Q 033923           88 HVVLRPSLP   96 (108)
Q Consensus        88 hlv~~~~~~   96 (108)
                      |++.+.+++
T Consensus        68 ~~~~rL~GG   76 (128)
T KOG0003|consen   68 HLVLRLRGG   76 (128)
T ss_pred             hhhHHHhcC
Confidence            999998887

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.61  E-value=1.1e-15  Score=97.25  Aligned_cols=56  Identities=25%  Similarity=0.386  Sum_probs=49.2

Q ss_pred             CcchHHHHHHHHHhhCCCCCcC-CCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEec
Q 033923           26 PTTTVASLKEKIISRWPKEKEN-GPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR   92 (108)
Q Consensus        26 ~~~TV~~LK~~I~~~~~~~~~i-~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~   92 (108)
                      .++||.+||++|+++.+..  + +   +++|||||+||+|+|+.+|++|+|++++      ++||+..
T Consensus        19 ~~~TV~~LK~kI~~~~~eg--i~~---~dqQrLIy~GKiL~D~~TL~dygI~~gs------tlhLv~~   75 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDS--LPD---PELIDLIHCGRKLKDDQTLDFYGIQSGS------TIHILRK   75 (75)
T ss_pred             ccCcHHHHHHHHHHhhccC--CCC---hHHeEEEeCCcCCCCCCcHHHcCCCCCC------EEEEEeC
Confidence            5899999999999996421  3 3   7999999999999999999999999997      9999863

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.60  E-value=5.8e-15  Score=117.87  Aligned_cols=76  Identities=29%  Similarity=0.399  Sum_probs=66.1

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||+.+|+++. ++|++++||.+||++|+...+.+. ++   +++|||||+||+|+|+.+|++|+|.+++      +
T Consensus         1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~g~~~-ip---~~~QkLIy~GkiL~Dd~tL~dy~I~e~~------~   69 (378)
T TIGR00601         1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQGKDA-YP---VAQQKLIYSGKILSDDKTVREYKIKEKD------F   69 (378)
T ss_pred             CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhhCCCC-CC---hhHeEEEECCEECCCCCcHHHcCCCCCC------E
Confidence            47999999999998 999999999999999999876321 56   8999999999999999999999999887      5


Q ss_pred             EEEEecC
Q 033923           87 MHVVLRP   93 (108)
Q Consensus        87 vhlv~~~   93 (108)
                      |++++..
T Consensus        70 Ivvmv~k   76 (378)
T TIGR00601        70 VVVMVSK   76 (378)
T ss_pred             EEEEecc
Confidence            5555553

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00213 UBQ Ubiquitin homologues

Probab=99.58  E-value=6.5e-15  Score=88.26  Aligned_cols=64  Identities=36%  Similarity=0.433  Sum_probs=58.3

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      ++|+||..+ ..+. +++++++||++||++|+..++    ++   ++.|||+|+|+.|.|+.+|++|++.+++
T Consensus         1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~~~----~~---~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAELTG----IP---VEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            478999988 6666 999999999999999999998    77   8899999999999999999999998763

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.56  E-value=1.4e-14  Score=91.53  Aligned_cols=63  Identities=21%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE---cCcccCCCCcccccCCCCCCCCCcceEEEEEe
Q 033923           15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH---AGKILEDNMTIAESRLPVVELPGTAITMHVVL   91 (108)
Q Consensus        15 ~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy---~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~   91 (108)
                      .|+++. +++++++||++||++|++..+    +|   +++|||||   +|+.|.|+.+|++|++.+++      .++|+-
T Consensus         8 ~g~~~~-v~v~~~~Tv~~lK~~i~~~tg----vp---~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~------~i~lmG   73 (74)
T cd01813           8 GGQEYS-VTTLSEDTVLDLKQFIKTLTG----VL---PERQKLLGLKVKGKPAEDDVKISALKLKPNT------KIMMMG   73 (74)
T ss_pred             CCEEEE-EEECCCCCHHHHHHHHHHHHC----CC---HHHEEEEeecccCCcCCCCcCHHHcCCCCCC------EEEEEe
Confidence            567776 999999999999999999998    88   99999997   99999999999999999987      777763

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.56  E-value=1.2e-14  Score=118.35  Aligned_cols=75  Identities=25%  Similarity=0.388  Sum_probs=66.8

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      .+.|.||+.++ ... |.|..+.||.+||+.|.....    ++   +++++|||+||+|+|++||..|||++|.      
T Consensus        15 ~irV~Vkt~~d-k~~-~~V~~~ssV~qlKE~I~~~f~----a~---~dqlvLIfaGrILKD~dTL~~~gI~Dg~------   79 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYE-VNVASDSSVLQLKELIAQRFG----AP---PDQLVLIYAGRILKDDDTLKQYGIQDGH------   79 (493)
T ss_pred             eeEEEEecCCc-cee-EecccchHHHHHHHHHHHhcC----CC---hhHeeeeecCccccChhhHHHcCCCCCc------
Confidence            36788888777 344 999999999999999999987    67   9999999999999999999999999996      


Q ss_pred             EEEEEecCCC
Q 033923           86 TMHVVLRPSL   95 (108)
Q Consensus        86 tvhlv~~~~~   95 (108)
                      |||||++...
T Consensus        80 TvHLVik~~~   89 (493)
T KOG0010|consen   80 TVHLVIKSQP   89 (493)
T ss_pred             EEEEEeccCC
Confidence            9999998653

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.51  E-value=9.1e-14  Score=88.21  Aligned_cols=68  Identities=18%  Similarity=0.166  Sum_probs=58.3

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC-CCCcccccCCC-CCCCCCcceE
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLP-VVELPGTAIT   86 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~-D~~tL~~~~i~-~~~~~~~~~t   86 (108)
                      |-=+...|.++. +++++++||++||++|++..+    +|   +++||| |.|+.|. |+.+|++|++. +|+      +
T Consensus         5 ~~~~~~~~~t~~-l~v~~~~TV~~lK~kI~~~~g----ip---~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~------~   69 (75)
T cd01799           5 VEDAQSHTVTIW-LTVRPDMTVAQLKDKVFLDYG----FP---PAVQRW-VIGQRLARDQETLYSHGIRTNGD------S   69 (75)
T ss_pred             EeccccCCCeEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHEEE-EcCCeeCCCcCCHHHcCCCCCCC------E
Confidence            333456788887 999999999999999999999    88   899999 9999885 77999999999 666      8


Q ss_pred             EEEEe
Q 033923           87 MHVVL   91 (108)
Q Consensus        87 vhlv~   91 (108)
                      +||-+
T Consensus        70 ~~l~~   74 (75)
T cd01799          70 AFLYI   74 (75)
T ss_pred             EEEEe
Confidence            88754

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.46  E-value=5.1e-13  Score=80.88  Aligned_cols=67  Identities=34%  Similarity=0.437  Sum_probs=60.5

Q ss_pred             EEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEE
Q 033923           11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV   90 (108)
Q Consensus        11 ~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv   90 (108)
                      ||..+|..+. +.+++++||++||++|+..++    ++   ++.|+|+|+|+.|+|+.+|++|++.+++      ++++.
T Consensus         2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~~----~~---~~~~~l~~~g~~l~d~~~l~~~~v~~~~------~i~v~   67 (69)
T cd01769           2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKEG----VP---PEQQRLIYAGKILKDDKTLSDYGIQDGS------TLHLV   67 (69)
T ss_pred             eEccCCCEEE-EEECCCChHHHHHHHHHHHHC----cC---hHHEEEEECCcCCCCcCCHHHCCCCCCC------EEEEE
Confidence            5666888887 999999999999999999998    77   8999999999999999999999999886      78776


Q ss_pred             e
Q 033923           91 L   91 (108)
Q Consensus        91 ~   91 (108)
                      .
T Consensus        68 ~   68 (69)
T cd01769          68 L   68 (69)
T ss_pred             E
Confidence            4

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.38  E-value=1.9e-12  Score=101.32  Aligned_cols=67  Identities=24%  Similarity=0.345  Sum_probs=63.4

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      +.|+||++.|.+++ +++.|++||.++|.+|+...+.+  .|   .+.|+|||+||+|.|+.++.+|++.+++
T Consensus         1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~~g~d--yP---~~~QkLIy~GkiL~D~~tv~Eykv~E~~   67 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETEKGPD--YP---AEQQKLIYSGKILKDETTVGEYKVKEKK   67 (340)
T ss_pred             CeeEeeeccCceeE-eecCcchhHHHHHHHHHhccCCC--Cc---hhhheeeecceeccCCcchhhhccccCc
Confidence            47899999999998 99999999999999999999877  67   8999999999999999999999999887

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.33  E-value=4.6e-12  Score=78.50  Aligned_cols=71  Identities=34%  Similarity=0.419  Sum_probs=63.6

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCC-CceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTV-NNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~-~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      ++|+++..+|+.+. +.+.+++++..|++.+.++.+    ++   + +.++|+|.|+.|.++.|++++++.+++      
T Consensus         1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~~~----i~---~~~~~~l~fdG~~L~~~~T~~~~~ied~d------   66 (72)
T PF11976_consen    1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEKKG----IP---PEESIRLIFDGKRLDPNDTPEDLGIEDGD------   66 (72)
T ss_dssp             EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHHHT----TT---T-TTEEEEETTEEE-TTSCHHHHT-STTE------
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhC----CC---ccceEEEEECCEEcCCCCCHHHCCCCCCC------
Confidence            57999999999888 999999999999999999988    66   6 999999999999999999999999998      


Q ss_pred             EEEEEe
Q 033923           86 TMHVVL   91 (108)
Q Consensus        86 tvhlv~   91 (108)
                      ++++++
T Consensus        67 ~Idv~I   72 (72)
T PF11976_consen   67 TIDVII   72 (72)
T ss_dssp             EEEEE-
T ss_pred             EEEEEC
Confidence            898874

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.23  E-value=2.9e-11  Score=80.77  Aligned_cols=60  Identities=20%  Similarity=0.173  Sum_probs=54.4

Q ss_pred             eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCC-CCcccccCCCCCCCCCcceEEEEEecCC
Q 033923           22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED-NMTIAESRLPVVELPGTAITMHVVLRPS   94 (108)
Q Consensus        22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D-~~tL~~~~i~~~~~~~~~~tvhlv~~~~   94 (108)
                      +.|.+++||++||.+|.+..+    ++   |.+|+|+|.|+.|.| ..||++||+..++      +++|.+..+
T Consensus        19 L~V~~~~TVg~LK~lImQ~f~----V~---P~dQkL~~dG~~L~DDsrTLssyGv~sgS------vl~LlideP   79 (107)
T cd01795          19 LLVSANQTLKELKIQIMHAFS----VA---PFDQNLSIDGKILSDDCATLGTLGVIPES------VILLKADEP   79 (107)
T ss_pred             EEeCccccHHHHHHHHHHHhc----CC---cccceeeecCceeccCCccHHhcCCCCCC------EEEEEecCC
Confidence            899999999999999999999    77   999999999999965 6899999999887      888988644

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.23  E-value=1.1e-10  Score=75.34  Aligned_cols=72  Identities=18%  Similarity=0.238  Sum_probs=57.3

Q ss_pred             EEEEEEeCC-CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE-EEcCc-----cc-CCCCcccccCCCCC
Q 033923            7 IELKFRLAD-GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL-IHAGK-----IL-EDNMTIAESRLPVV   78 (108)
Q Consensus         7 i~i~~r~~~-g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL-Iy~Gk-----~L-~D~~tL~~~~i~~~   78 (108)
                      +.|.|.... ....+ .++++++||.+||++|+...|    ++   ++.||| +|.|+     .| +|+.+|+.|++++|
T Consensus         2 v~v~i~~~~~~~~~e-kr~~~~~Tv~~lK~kl~~~~G----~~---~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg   73 (84)
T cd01789           2 VTVNITSSADSFSFE-KKYSRGLTIAELKKKLELVVG----TP---ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG   73 (84)
T ss_pred             EEEEEEeCCCceeee-EecCCCCcHHHHHHHHHHHHC----CC---ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC
Confidence            345554433 22333 669999999999999999999    77   899999 58999     35 78899999999999


Q ss_pred             CCCCcceEEEEEec
Q 033923           79 ELPGTAITMHVVLR   92 (108)
Q Consensus        79 ~~~~~~~tvhlv~~   92 (108)
                      .      +||++=.
T Consensus        74 ~------~IhVvD~   81 (84)
T cd01789          74 C------RIHVIDV   81 (84)
T ss_pred             C------EEEEEeC
Confidence            7      9999854

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3.5e-11  Score=104.68  Aligned_cols=74  Identities=19%  Similarity=0.269  Sum_probs=69.0

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM   87 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv   87 (108)
                      .|+++++|..+.+ |.++..+||.+||.+|.++..    |+   .+.|||||+||.|.|++++.+|++ +|.      +|
T Consensus         4 ~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~~n----i~---s~~qr~i~~grvl~~~k~vq~~~v-dgk------~~   68 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRASVN----IP---SEKQRLIYQGRVLQDDKKVQEYNV-DGK------VI   68 (1143)
T ss_pred             ceeeeecccceeE-EEechHHHHHHHHHHHHHhcc----cc---cccceeeecceeeccchhhhhccC-CCe------EE
Confidence            4899999999888 999999999999999999988    88   999999999999999999999999 687      99


Q ss_pred             EEEecCCCC
Q 033923           88 HVVLRPSLP   96 (108)
Q Consensus        88 hlv~~~~~~   96 (108)
                      |||-|++.+
T Consensus        69 hlverppp~   77 (1143)
T KOG4248|consen   69 HLVERPPPQ   77 (1143)
T ss_pred             EeeccCCCC
Confidence            999997654

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.12  E-value=1e-09  Score=65.67  Aligned_cols=72  Identities=32%  Similarity=0.411  Sum_probs=65.4

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH   88 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh   88 (108)
                      ++++...|+++. +++.+..+|..+|.+|+...+    ++   .+.|++.|.|+.|+|+.+|++|+|..++      ++|
T Consensus         2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~~~~~----~~---~~~q~~~~~~~~l~d~~~l~~~~i~~~~------~~~   67 (75)
T KOG0001|consen    2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIRDKEG----IP---VDQQRLIFGGKPLEDGRTLADYNIQEGS------TLH   67 (75)
T ss_pred             EEEEecCCCEEE-EEecCCCHHHHHHHHHHhhcC----CC---CeeEEEEECCEECcCCCcHHHhCCCCCC------EEE
Confidence            456678899988 999999999999999999988    77   8999999999999999999999999886      899


Q ss_pred             EEecCC
Q 033923           89 VVLRPS   94 (108)
Q Consensus        89 lv~~~~   94 (108)
                      ++.+..
T Consensus        68 l~~~~~   73 (75)
T KOG0001|consen   68 LVLSLR   73 (75)
T ss_pred             EEEecC
Confidence            988775

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.94  E-value=5e-09  Score=67.47  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=56.1

Q ss_pred             EEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc--------CcccCCCCcccccCCC
Q 033923            7 IELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--------GKILEDNMTIAESRLP   76 (108)
Q Consensus         7 i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~--------Gk~L~D~~tL~~~~i~   76 (108)
                      +.|.|.....  ...+ .++++++||++||++|+..+|    ++   ++.|||.+.        -.+..|+.+|+.|++.
T Consensus         2 v~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~~G----i~---~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~   73 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKLTG----IP---PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIK   73 (87)
T ss_dssp             EEEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHHHT----S----TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-S
T ss_pred             EEEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHHhC----CC---cccEEEEEEecCCCccccccCCCccEeecCCCC
Confidence            5666766544  3665 999999999999999999999    88   999999887        1234678999999999


Q ss_pred             CCCCCCcceEEEEEe
Q 033923           77 VVELPGTAITMHVVL   91 (108)
Q Consensus        77 ~~~~~~~~~tvhlv~   91 (108)
                      +|.      .+|++=
T Consensus        74 dg~------~i~V~D   82 (87)
T PF14560_consen   74 DGM------RIHVVD   82 (87)
T ss_dssp             TTE------EEEEEE
T ss_pred             CCC------EEEEEe
Confidence            996      888864

>PLN02560 enoyl-CoA reductase

Probab=98.86  E-value=1.1e-08  Score=79.93  Aligned_cols=66  Identities=24%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             EEEEEeCCCCee--eeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc---C----cccCCCCcccccCCCCC
Q 033923            8 ELKFRLADGADI--GPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---G----KILEDNMTIAESRLPVV   78 (108)
Q Consensus         8 ~i~~r~~~g~~~--~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~---G----k~L~D~~tL~~~~i~~~   78 (108)
                      .|.|+..+|+.+  ..++++++.||++||++|+++.+.   .+   +++|||++.   |    +.|.|+++|+++++.++
T Consensus         2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~---~~---~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g   75 (308)
T PLN02560          2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKK---YY---PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG   75 (308)
T ss_pred             EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCC---CC---hhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence            567777788887  349999999999999999998772   25   799999983   4    48899999999999988


Q ss_pred             C
Q 033923           79 E   79 (108)
Q Consensus        79 ~   79 (108)
                      +
T Consensus        76 s   76 (308)
T PLN02560         76 G   76 (308)
T ss_pred             c
Confidence            6

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.80  E-value=2.1e-08  Score=63.31  Aligned_cols=53  Identities=32%  Similarity=0.331  Sum_probs=45.1

Q ss_pred             CCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE--EEcCcccCCCCcccccCCCCCCCCCcceEEEE
Q 033923           25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQL--IHAGKILEDNMTIAESRLPVVELPGTAITMHV   89 (108)
Q Consensus        25 ~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL--Iy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhl   89 (108)
                      +++.||.+||+.|+..++.   ++   +++|||  ++.|+.|.|+.+|++||+.+|+      ++|+
T Consensus        20 ~~~aTV~dlk~~i~~~~~~---~~---~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~------~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQ---LT---VNRQSLRLEPKGKSLKDDDTLVDLGVGAGA------TLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCC---CC---cceeEEEeCCCCcccCCcccHhhcCCCCCC------EEEE
Confidence            5889999999999988762   34   688888  6999999999999999999886      6765

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.78  E-value=3.1e-08  Score=67.54  Aligned_cols=78  Identities=15%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcceEE
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAITM   87 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~tv   87 (108)
                      ++++....++.--+++.++.||.+||++|+.-..    .|   +++|||+-.+.+|+|++||++||+....+ +.++.+|
T Consensus         3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k----~p---p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~v   75 (119)
T cd01788           3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILK----RP---PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATV   75 (119)
T ss_pred             eEEEEEecceEEEeecCCcccHHHHHHHHHHHhc----CC---hhHheeecCceeecccccHHHcCccccccccCCCCeE
Confidence            3444444554334899999999999999998776    56   89999997778999999999999954333 2345577


Q ss_pred             EEEecC
Q 033923           88 HVVLRP   93 (108)
Q Consensus        88 hlv~~~   93 (108)
                      =|..|.
T Consensus        76 gLa~r~   81 (119)
T cd01788          76 GLAFRS   81 (119)
T ss_pred             EEEEec
Confidence            777773

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.70  E-value=1.4e-07  Score=53.20  Aligned_cols=67  Identities=30%  Similarity=0.387  Sum_probs=57.4

Q ss_pred             EEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEE
Q 033923           11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV   90 (108)
Q Consensus        11 ~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv   90 (108)
                      ++..+|.... +.+.+.+|+++||++|...++    .+   ++.++|++.|..+.+...+.++++..++      .+++.
T Consensus         2 v~~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~----~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~i~~~   67 (69)
T cd00196           2 VKLNDGKTVE-LLVPSGTTVADLKEKLAKKLG----LP---PEQQRLLVNGKILPDSLTLEDYGLQDGD------ELVLV   67 (69)
T ss_pred             eEecCCCEEE-EEcCCCCcHHHHHHHHHHHHC----cC---hHHeEEEECCeECCCCCcHHHcCCCCCC------EEEEE
Confidence            3444677776 999999999999999999998    56   8999999999999999888899999887      77775


Q ss_pred             e
Q 033923           91 L   91 (108)
Q Consensus        91 ~   91 (108)
                      .
T Consensus        68 ~   68 (69)
T cd00196          68 P   68 (69)
T ss_pred             e
Confidence            4

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=98.64  E-value=1e-07  Score=63.32  Aligned_cols=60  Identities=35%  Similarity=0.510  Sum_probs=46.7

Q ss_pred             EEEEeCCC-CeeeeeEeC--CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC
Q 033923            9 LKFRLADG-ADIGPSKFS--PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR   74 (108)
Q Consensus         9 i~~r~~~g-~~~~~l~v~--~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~   74 (108)
                      |.||+.++ -++. +++.  .++||..||+.|.+..|.+     .+-..+||||+||+|.|...|+..-
T Consensus         3 l~IRFs~sipDl~-L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~l   65 (97)
T PF10302_consen    3 LTIRFSDSIPDLP-LDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSEL   65 (97)
T ss_pred             EEEEECCCCCCce-eecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhhh
Confidence            45555553 3444 7777  8899999999999999732     2389999999999999998887653

They contain a characteristic GFDRL sequence motif.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.41  E-value=8.7e-07  Score=56.84  Aligned_cols=69  Identities=25%  Similarity=0.300  Sum_probs=41.7

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc----cc--CCCCcccccCCCCC
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK----IL--EDNMTIAESRLPVV   78 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk----~L--~D~~tL~~~~i~~~   78 (108)
                      +.+-|+||..+|. .+ +++++++|+++|+++|.+..+    ++   .+.+.| |..+    .|  .++.+|+++||..|
T Consensus         3 ~~milRvrS~dG~-~R-ie~~~~~t~~~L~~kI~~~l~----~~---~~~~~L-~~~~~~~~~l~s~~~~tl~~lglkHG   72 (80)
T PF11543_consen    3 SSMILRVRSKDGM-KR-IEVSPSSTLSDLKEKISEQLS----IP---DSSQSL-SKDRNNKEELKSSDSKTLSSLGLKHG   72 (80)
T ss_dssp             ---EEEEE-SSEE-EE-EEE-TTSBHHHHHHHHHHHS----------TTT----BSSGGGGGCSSS-TT-CCCCT---TT
T ss_pred             ccEEEEEECCCCC-EE-EEcCCcccHHHHHHHHHHHcC----CC---CcceEE-EecCCCCcccccCCcCCHHHcCCCCc
Confidence            4678999999995 46 899999999999999999998    66   566766 3322    34  46789999999999


Q ss_pred             CCCCcceEEEE
Q 033923           79 ELPGTAITMHV   89 (108)
Q Consensus        79 ~~~~~~~tvhl   89 (108)
                      +      .++|
T Consensus        73 d------mlyL   77 (80)
T PF11543_consen   73 D------MLYL   77 (80)
T ss_dssp             -------EEE-
T ss_pred             c------EEEE
Confidence            8      6655

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.9e-08  Score=79.39  Aligned_cols=85  Identities=21%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             CCceEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923            3 GEDLIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         3 ~~~~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~   80 (108)
                      .|..+.+.++..+.  ++.. +..+..|||++||.+++..+|+    .|. ..+|||||+||.|.|...|++.-++... 
T Consensus         6 ~e~~v~lliks~Nq~y~dl~-i~~dl~wtv~~Lk~hls~VyPs----kpl-~~dqrliYsgkllld~qcl~d~lrkq~k-   78 (391)
T KOG4583|consen    6 FEFPVTLLIKSPNQSYKDLS-ISLDLKWTVGDLKVHLSQVYPS----KPL-ELDQRLIYSGKLLLDHQCLTDWLRKQVK-   78 (391)
T ss_pred             CCcceEEEecCCCcccccee-eehhhhhhHHHHhhhHhhcCCC----CCc-hhhHHHHhhccccccchhHHHHHHHHHH-
Confidence            45667777777654  4555 7888999999999999999994    566 8999999999999999999997444332 


Q ss_pred             CCcceEEEEEecCCCCC
Q 033923           81 PGTAITMHVVLRPSLPD   97 (108)
Q Consensus        81 ~~~~~tvhlv~~~~~~~   97 (108)
                         -+++|||+..+...
T Consensus        79 ---~Hv~hlvcnsk~v~   92 (391)
T KOG4583|consen   79 ---EHVKHLVCNSKEVV   92 (391)
T ss_pred             ---HHHHHHhcCCCCCC
Confidence               24778887765543

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.2e-06  Score=69.33  Aligned_cols=60  Identities=28%  Similarity=0.479  Sum_probs=53.9

Q ss_pred             eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEE-ecC
Q 033923           21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVV-LRP   93 (108)
Q Consensus        21 ~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv-~~~   93 (108)
                      +++++.+.+|.+||+.++.+.+    +|   ++++|+||+||.|.|+.++..|.+...+      .+|++ .||
T Consensus        17 ~v~v~~~t~I~~lke~Vak~~g----vp---~D~L~viFaGKeLs~~ttv~~cDL~qqs------~~hi~~lRP   77 (446)
T KOG0006|consen   17 PVEVDSDTSIFQLKEVVAKRQG----VP---ADQLRVIFAGKELSNDTTVQNCDLSQQS------ATHIMLLRP   77 (446)
T ss_pred             eEEEecCCCHHHHHHHHHHhhC----CC---hhheEEEEeccccccCceeecccccccc------hhhhhccCc
Confidence            3899999999999999999999    88   9999999999999999999999887665      67877 555

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.17  E-value=7.6e-06  Score=52.14  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc---C--cccCCCCcccccCCCC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---G--KILEDNMTIAESRLPV   77 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~---G--k~L~D~~tL~~~~i~~   77 (108)
                      |+|.|.-..+.+.. +.|.|..+|..+|++|+..|+    +    ...|||-|.   |  +.|.+.++|++|||=-
T Consensus         1 iqVtV~q~g~~dl~-l~vnPy~pI~k~K~kI~~~~~----~----~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs   67 (80)
T cd01811           1 IQVTVEQTGYSDWI-LRVNPYSPIRKIKEKIRRSRN----C----SGLQRLSFQEPGGERQLLSSRKSLADYGIFS   67 (80)
T ss_pred             CEEEeeecCCCceE-EEeCCcchHHHHHHHHHHhhC----c----ccceEEEeecCCcccccccccccHhhhccee
Confidence            46777777888887 999999999999999999999    4    589999995   2  3778999999999863

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=98.16  E-value=1.8e-05  Score=49.97  Aligned_cols=70  Identities=23%  Similarity=0.377  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCCC--CcccccCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILEDN--MTIAESRLPVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D~--~tL~~~~i~~~   78 (108)
                      ++..+.|.||+.+|+.+. -.|.+++||.+|.+-|......    + . ....+|+  |-.+.|.++  .+|+++++-++
T Consensus         3 ~~~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~~~----~-~-~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~   75 (82)
T PF00789_consen    3 ESDVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQLFS----P-E-ESDFELITAFPRRELTDEDSKTLEEAGLLPS   75 (82)
T ss_dssp             TSSEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHHHC----T-T-TSSEEEEESSSTEECCSTTTSBTCCCTTSSC
T ss_pred             CCCEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhcCC----C-C-CccEEEEeCCCCcCCCccccccHHHhcCCCC
Confidence            567899999999999988 9999999999999999987662    2 1 2236776  667777554  69999988866


Q ss_pred             C
Q 033923           79 E   79 (108)
Q Consensus        79 ~   79 (108)
                      .
T Consensus        76 ~   76 (82)
T PF00789_consen   76 A   76 (82)
T ss_dssp             E
T ss_pred             e
Confidence            4

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=98.07  E-value=5.7e-05  Score=48.18  Aligned_cols=68  Identities=25%  Similarity=0.417  Sum_probs=55.2

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC-CCCcccccCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE-DNMTIAESRLPVV   78 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~-D~~tL~~~~i~~~   78 (108)
                      +....|.||+.+|+.+. ..|..++||++|.+-|....+.   ..   .....|+  |-.|.|. ++.||+++|+.+.
T Consensus         2 ~p~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~---~~---~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s   72 (79)
T cd01770           2 EPTTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPE---FA---ARPFTLMTAFPVKELSDESLTLKEANLLNA   72 (79)
T ss_pred             CCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCC---CC---CCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence            56789999999999998 9999999999999999987652   11   3566675  6788774 4789999999854

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=2.8e-05  Score=58.19  Aligned_cols=68  Identities=18%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CceEEEEEEeC-CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            4 EDLIELKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         4 ~~~i~i~~r~~-~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      ..+..++.|+. .++++. +.+...+||+++|.++....+    +.   +-.||++|+|++|.|...|.+|++..+.
T Consensus       143 ~~e~~lk~rlTtT~~d~~-lta~~~Dtv~eik~~L~Aaeg----~D---~~sQrif~Sg~~l~dkt~LeEc~iekg~  211 (231)
T KOG0013|consen  143 HTEPILKLRLTTTREDFW-LTAPHYDTVGEIKRALRAAEG----VD---PLSQRIFFSGGVLVDKTDLEECKIEKGQ  211 (231)
T ss_pred             CCCcchHHHhhhhhhhee-ecccCcCcHHHHHHHHHHhhc----cc---hhhheeeccCCceeccccceeeeecCCC
Confidence            34556677776 778887 899999999999999999998    44   7899999999999999999999999883

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0004  Score=46.32  Aligned_cols=79  Identities=19%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ++.|.|+|.--+|..+. |.+..++....|...-..+.|    +.   .+.+|++|.|+.+.+.+|-++.++.+++    
T Consensus        18 ~~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r~G----l~---~~s~RFlFdG~rI~~~~TP~~L~mEd~D----   85 (99)
T KOG1769|consen   18 SEHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCERQG----LS---MNSLRFLFDGQRIRETHTPADLEMEDGD----   85 (99)
T ss_pred             cceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHHcC----Cc---cceEEEEECCcCcCCCCChhhhCCcCCc----
Confidence            35677777776777766 999999999999999999999    66   8999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCC
Q 033923           84 AITMHVVLRPSLP   96 (108)
Q Consensus        84 ~~tvhlv~~~~~~   96 (108)
                        .+-++....++
T Consensus        86 --~Iev~~~q~gG   96 (99)
T KOG1769|consen   86 --EIEVVQEQTGG   96 (99)
T ss_pred             --EEEEEeecccC
Confidence              66666655444

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.78  E-value=7.7e-05  Score=49.77  Aligned_cols=74  Identities=20%  Similarity=0.242  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccCCCCcccccCCCCCCC-CCc
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRLPVVEL-PGT   83 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~D~~tL~~~~i~~~~~-~~~   83 (108)
                      +.|.||.  .++.--+.++++.||-+||.+++.-..    -|   ++.|||.-.-  ++|+|..+|++||+....+ +.+
T Consensus         3 ~f~~VrR--~kttif~da~es~tV~elK~~l~gi~~----~P---vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~   73 (110)
T KOG4495|consen    3 VFLRVRR--HKTTIFTDAKESSTVFELKRKLEGILK----RP---VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQA   73 (110)
T ss_pred             eeeeeee--cceeEEeecCccccHHHHHHHHHHHHh----CC---CcchheeecCHHHHhhccchhhhccccccccccCC
Confidence            3444444  443333899999999999999998655    35   8999997633  5889999999998764443 445


Q ss_pred             ceEEEE
Q 033923           84 AITMHV   89 (108)
Q Consensus        84 ~~tvhl   89 (108)
                      +.++-|
T Consensus        74 pA~vgL   79 (110)
T KOG4495|consen   74 PATVGL   79 (110)
T ss_pred             Cceeee
Confidence            556544

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.70  E-value=0.00058  Score=43.10  Aligned_cols=67  Identities=21%  Similarity=0.321  Sum_probs=52.2

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC---CCcccccCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV   78 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D---~~tL~~~~i~~~   78 (108)
                      +....|.||+.+|+.+. -.+.+++||.+|.+-|....+    ..   ....+|+  |-.|.|.+   +.+|.++++-+.
T Consensus         2 ~~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~~----~~---~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~   73 (80)
T smart00166        2 SDQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAALT----DG---NDPFTLNSPFPRRTFTKDDYSKTLLELALLPS   73 (80)
T ss_pred             CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHccc----CC---CCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence            36789999999999998 999999999999999966554    22   3455664  56677754   479999998655

Present in FAF1 and Shp1p.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=97.66  E-value=0.0008  Score=43.47  Aligned_cols=67  Identities=19%  Similarity=0.347  Sum_probs=55.4

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccC--------CCCccccc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE--------DNMTIAES   73 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~--------D~~tL~~~   73 (108)
                      .+.+.|.||+.+|+.+. -.|..++||.+|.+-|.. .+    ..   +...+|+++-  |.+.        .+.||.+.
T Consensus         2 ~~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~-~~----~~---~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea   72 (85)
T cd01774           2 PDTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFS-LK----ET---PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA   72 (85)
T ss_pred             CceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-CC----CC---CCcEEEecCCCCccccccccccCcCCCCHHHc
Confidence            35789999999999987 899999999999999964 34    24   6789999887  8885        36799999


Q ss_pred             CCCCCC
Q 033923           74 RLPVVE   79 (108)
Q Consensus        74 ~i~~~~   79 (108)
                      ||.+..
T Consensus        73 GL~~s~   78 (85)
T cd01774          73 GLSNSE   78 (85)
T ss_pred             CCCCcc
Confidence            998653

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.48  E-value=0.00037  Score=43.98  Aligned_cols=71  Identities=14%  Similarity=0.224  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE-EcCcccCCCCcccccCCCCCC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-HAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI-y~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      +.|.|...+|..+. +.++.+.+|++|...|.+..+... ..+......+|. -.|+.|.++.+|+++++.+|+
T Consensus         3 ~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~-~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd   74 (79)
T PF08817_consen    3 CRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPG-DDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGD   74 (79)
T ss_dssp             EEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S----TT-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred             EEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCcc-CCCCCcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence            56777776678887 999999999999999999877321 111111246676 678899999999999999998

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=97.45  E-value=0.0015  Score=41.34  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC---CCcccccCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV   78 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D---~~tL~~~~i~~~   78 (108)
                      .....|.||+.+|+.+. -.+..++|+.+|.+-|....+.        .....|+  |-.|.+.+   +.||.++|+.+.
T Consensus         2 ~~~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps   72 (79)
T cd01772           2 YTETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS   72 (79)
T ss_pred             CcEEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence            45688999999999988 8999999999999999976552        2344554  56677753   489999998865


Q ss_pred             C
Q 033923           79 E   79 (108)
Q Consensus        79 ~   79 (108)
                      .
T Consensus        73 a   73 (79)
T cd01772          73 A   73 (79)
T ss_pred             e
Confidence            3

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=97.43  E-value=0.00099  Score=41.67  Aligned_cols=64  Identities=22%  Similarity=0.437  Sum_probs=51.2

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC---CCcccccCCCCC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED---NMTIAESRLPVV   78 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D---~~tL~~~~i~~~   78 (108)
                      ...|.||+.+|+.+. -.+..++||.+|.+-|......        ....+|+  |-.|.+.|   +.+|.++|+.+.
T Consensus         2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s   70 (77)
T cd01767           2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE   70 (77)
T ss_pred             cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence            568999999999988 9999999999999999876551        3455565  45677754   789999999843

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=4.3e-05  Score=47.55  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCC
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVV   78 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~   78 (108)
                      ++.+.---|+.++ +.+.+++||+++|..|+.+.|.    .   ++...|---+-++.|.-+|++|-|.+|
T Consensus         3 ev~~nDrLGKKVR-vKCn~dDtiGD~KKliaaQtGT----~---~~kivl~k~~~i~kd~I~L~dyeihdg   65 (73)
T KOG3493|consen    3 EVVLNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTGT----R---PEKIVLKKWYTIFKDHITLSDYEIHDG   65 (73)
T ss_pred             eehhhhhcCceEE-EEeCCcccccCHHHHHHHhhCC----C---hhHhHHHhhhhhhhcccceeeEEeccC
Confidence            4444445689998 9999999999999999999994    4   566666555568899999999999877

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.30  E-value=0.0028  Score=45.74  Aligned_cols=81  Identities=21%  Similarity=0.280  Sum_probs=56.9

Q ss_pred             EEEEEEeCCC----CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCc-eEEEEc-Cccc--CCCCcccccCCCCC
Q 033923            7 IELKFRLADG----ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNN-VQLIHA-GKIL--EDNMTIAESRLPVV   78 (108)
Q Consensus         7 i~i~~r~~~g----~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~-qRLIy~-Gk~L--~D~~tL~~~~i~~~   78 (108)
                      |+|+|+..+|    .++. +.++++.||.+|+.+|....+    ++   ... +-|.+. ++.|  .++..++.+.-...
T Consensus         1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~~~----~~---~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~   72 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSERLP----IP---SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ   72 (162)
T ss_pred             CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhhcC----CC---ccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence            5789999999    4776 999999999999999999988    44   333 344442 3444  45555666543322


Q ss_pred             CCCCcceEEEEEecCCCCC
Q 033923           79 ELPGTAITMHVVLRPSLPD   97 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~~~~   97 (108)
                      +  ....+++|..+..+++
T Consensus        73 ~--~~~~~l~l~~rl~GGK   89 (162)
T PF13019_consen   73 D--SDFITLRLSLRLRGGK   89 (162)
T ss_pred             C--CCceEEEEEEeccCCC
Confidence            2  1356899999988875

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0022  Score=52.88  Aligned_cols=73  Identities=12%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             EEEEeCCCCeeeeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEE
Q 033923            9 LKFRLADGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITM   87 (108)
Q Consensus         9 i~~r~~~g~~~~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tv   87 (108)
                      |.|+- .|+... ++ ++.++|+..||++|+...+    ++   |++||+.+.|+.+.|+--+....|.++.      ++
T Consensus         6 v~VKW-~gk~y~-v~~l~~d~t~~vlKaqlf~LTg----V~---PeRQKv~vKGg~a~dd~~~~al~iKpn~------~l   70 (473)
T KOG1872|consen    6 VIVKW-GGKKYP-VETLSTDETPSVLKAQLFALTG----VP---PERQKVMVKGGLAKDDVDWGALQIKPNE------TL   70 (473)
T ss_pred             Eeeee-cCcccc-ceeccCCCchHHHHHHHHHhcC----CC---ccceeEEEecccccccccccccccCCCC------EE
Confidence            44433 344444 55 8999999999999999999    77   8999999999999999888899999986      89


Q ss_pred             EEEecCCCC
Q 033923           88 HVVLRPSLP   96 (108)
Q Consensus        88 hlv~~~~~~   96 (108)
                      +++-.....
T Consensus        71 mMmGt~e~~   79 (473)
T KOG1872|consen   71 MMMGTAEAG   79 (473)
T ss_pred             Eeecccccc
Confidence            888776543

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=97.12  E-value=0.0088  Score=38.17  Aligned_cols=68  Identities=25%  Similarity=0.354  Sum_probs=54.4

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC--C-CCcccccCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE--D-NMTIAESRLPV   77 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~--D-~~tL~~~~i~~   77 (108)
                      +++.+.|.||+.+|..+. -.+..++++.+|-.-|... +    .+   +...+|+  |--|.+.  | +.+|.+.|+..
T Consensus         1 ~~~~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~-~----~~---~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p   71 (80)
T cd01771           1 GEPISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK-G----YP---IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP   71 (80)
T ss_pred             CCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc-C----CC---CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence            578899999999999987 8999999999999999865 3    33   4567775  6667774  2 46899999886


Q ss_pred             CC
Q 033923           78 VE   79 (108)
Q Consensus        78 ~~   79 (108)
                      ..
T Consensus        72 ~~   73 (80)
T cd01771          72 QE   73 (80)
T ss_pred             Cc
Confidence            54

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=97.02  E-value=0.01  Score=37.92  Aligned_cols=71  Identities=6%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .+.+-|+--.|.++. ++++.-.+|..|-..+++...-+  +++.+-..+|..-.+++|.+++.|.+|+|.+|+
T Consensus         6 kVTvD~t~y~g~~yD-Lrl~d~~pikklIdivwe~~kis--~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD   76 (81)
T COG5417           6 KVTVDFTNYNGGTYD-LRLPDYLPIKKLIDIVWESLKIS--IFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD   76 (81)
T ss_pred             EEEEEeEecCCceEE-EeccccchHHHHHHHHHHHhhcc--ccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence            456666667899998 99999999999999999876632  455556789999999999999999999999998

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.011  Score=39.21  Aligned_cols=68  Identities=22%  Similarity=0.269  Sum_probs=58.4

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .+-|.|++---+|.++- |.+..+++-..|-.......|.    .   .+.+|++|.|+.++-++|-++.++.+++
T Consensus        22 t~hinLkvv~qd~telf-FkiKktT~f~klm~af~~rqGK----~---m~slRfL~dG~rI~~dqTP~dldmEdnd   89 (103)
T COG5227          22 TKHINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRRQGK----N---MSSLRFLFDGKRIDLDQTPGDLDMEDND   89 (103)
T ss_pred             ccccceEEecCCCCEEE-EEEeccchHHHHHHHHHHHhCc----C---cceeEEEEcceecCCCCChhhcCCccch
Confidence            44566777667888887 9999999999999888888884    3   8999999999999999999999998876

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=96.68  E-value=0.037  Score=35.71  Aligned_cols=68  Identities=18%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC---CCCcccccCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE---DNMTIAESRLPV   77 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~---D~~tL~~~~i~~   77 (108)
                      .+....|.||+.+|+.+. -.+..++++.+|-.-+.. ++    .+   ++...|+  |--|.+.   .+.||.++|+.+
T Consensus         2 ~~~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~-~g----~~---~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P   72 (82)
T cd01773           2 NGPKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQS-KG----YP---NERFELLTNFPRRKLSHLDYDITLQEAGLCP   72 (82)
T ss_pred             CCCeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-cC----CC---CCCEEEecCCCCcccCCcccCCCHHHcCCCC
Confidence            456789999999999998 999999999999988887 45    34   5677775  5556663   357999999987


Q ss_pred             CC
Q 033923           78 VE   79 (108)
Q Consensus        78 ~~   79 (108)
                      ..
T Consensus        73 ~~   74 (82)
T cd01773          73 QE   74 (82)
T ss_pred             Cc
Confidence            64

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=95.77  E-value=0.03  Score=45.25  Aligned_cols=69  Identities=28%  Similarity=0.365  Sum_probs=55.0

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--cCcccC-CCCcccccCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGKILE-DNMTIAESRLPVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~Gk~L~-D~~tL~~~~i~~~   78 (108)
                      .+.+-.|.||+.+|..+. ..|..+-||.+++..|....+.+   +   ...+-|++  --|.|. |+.||++.++.+.
T Consensus       302 ~~PtTsIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~~---~---~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns  373 (380)
T KOG2086|consen  302 AEPTTSIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPGD---S---STYFILMMAFPPKPLSDDSQTLEEAGLLNS  373 (380)
T ss_pred             CCCcceEEEEecCCceee-eeccCcccHHHHHHHHHhcCCCC---c---CCceeeeecCCCcccCCcchhHHhccchhh
Confidence            466779999999999886 99999999999999999988853   2   34555554  446774 5789999999854

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.077  Score=40.00  Aligned_cols=60  Identities=17%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEE-EEcC-----ccc-CCCCcccccCCCCCCCCCcceEEEEEecCC
Q 033923           22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQL-IHAG-----KIL-EDNMTIAESRLPVVELPGTAITMHVVLRPS   94 (108)
Q Consensus        22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRL-Iy~G-----k~L-~D~~tL~~~~i~~~~~~~~~~tvhlv~~~~   94 (108)
                      -+++++.||.+||.+|+...|    .+   ++.++| +|.|     -.| .++..|..|+..+|-      .||++=...
T Consensus        17 kr~~~~ltl~q~K~KLe~~~G----~~---~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~------rihviD~~~   83 (234)
T KOG3206|consen   17 KRLSNSLTLAQFKDKLELLTG----TE---AESMELELYDGDDKKVSALSNEDADLGFYKVEDGL------RIHVIDSNA   83 (234)
T ss_pred             hhcCCcCcHHHHHhhhhhhhC----CC---ccceEEEEEcCCCceeeeccCCcccccccCCCCce------EEEEEecCc
Confidence            677899999999999999999    45   677777 5666     234 556789999888874      788875543

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=95.25  E-value=0.072  Score=33.62  Aligned_cols=58  Identities=24%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc-CCCCCCCCCcceEEEEEecC
Q 033923           24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES-RLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        24 v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~-~i~~~~~~~~~~tvhlv~~~   93 (108)
                      |.++++|.++++-|......   -.   -....|.++|+.|.|...|++. ++.++.      +++++..|
T Consensus         1 v~~~d~v~dvrq~L~~~~~t---~~---~Tn~~L~~~g~~L~~~~el~~i~~~~~~~------~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPET---CY---LTNFSLEHNGQRLDDFVELSEIEGIKDGC------VLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhCccc---cc---eeEEEEEECCCccCCchhhhhhhCCCCCc------EEEEEecC
Confidence            46789999999999876431   12   7899999999999998999887 577654      78888655

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.16  E-value=0.071  Score=34.69  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCC
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPK   43 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~   43 (108)
                      ..||+...|..+. |.+.|++++.+|++.|.++.+.
T Consensus         2 ~FK~~~~~GrvhR-f~~~~s~~~~~L~~~I~~Rl~~   36 (86)
T cd06409           2 AFKFKDPKGRVHR-FRLRPSESLEELRTLISQRLGD   36 (86)
T ss_pred             cEEeeCCCCCEEE-EEecCCCCHHHHHHHHHHHhCC
Confidence            4688899999999 9999999999999999999984

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=94.85  E-value=0.26  Score=30.29  Aligned_cols=71  Identities=18%  Similarity=0.179  Sum_probs=53.6

Q ss_pred             EEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE----cC--cccCCCCcccccCCCCCCCCCcc
Q 033923           11 FRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH----AG--KILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus        11 ~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy----~G--k~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      |+++||.... +.+++++|+.+|=+.|.+..+    +.  +.+..=|.|    .|  ..|+.+++|.+......    .+
T Consensus         1 V~llD~~~~~-~~v~~~~t~~~l~~~v~~~l~----l~--e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~----~~   69 (80)
T PF09379_consen    1 VRLLDGTTKT-FEVDPKTTGQDLLEQVCDKLG----LK--EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN----PP   69 (80)
T ss_dssp             EEESSEEEEE-EEEETTSBHHHHHHHHHHHHT----TS--SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----SS
T ss_pred             CCCcCCCcEE-EEEcCCCcHHHHHHHHHHHcC----CC--CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----CC
Confidence            5789999888 999999999999999999988    43  278888888    22  36788888888865522    24


Q ss_pred             eEEEEEec
Q 033923           85 ITMHVVLR   92 (108)
Q Consensus        85 ~tvhlv~~   92 (108)
                      .++++-++
T Consensus        70 ~~l~frvk   77 (80)
T PF09379_consen   70 FTLYFRVK   77 (80)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEEE
Confidence            57777664

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=93.95  E-value=0.36  Score=29.72  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=41.0

Q ss_pred             eCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923           13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus        13 ~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      ..++.... +.+.|++++.++-+..-.+.+    +.   ++.-.|.|++|.|+-+.++.-.|+++|.
T Consensus         3 ~~~~rr~~-vkvtp~~~l~~VL~eac~k~~----l~---~~~~~L~h~~k~ldlslp~R~snL~n~a   61 (65)
T PF11470_consen    3 CYNFRRFK-VKVTPNTTLNQVLEEACKKFG----LD---PSSYDLKHNNKPLDLSLPFRLSNLPNNA   61 (65)
T ss_dssp             -TTS-EEE-E---TTSBHHHHHHHHHHHTT---------GGG-EEEETTEEESSS-BHHHH---SS-
T ss_pred             ccCCcEEE-EEECCCCCHHHHHHHHHHHcC----CC---ccceEEEECCEEeccccceeecCCCCCC
Confidence            35677777 999999999999999999998    66   7789999999999888899889998874

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>smart00295 B41 Band 4

Probab=91.88  E-value=2.4  Score=29.82  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=46.7

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC------cccCCCCcccccC
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG------KILEDNMTIAESR   74 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G------k~L~D~~tL~~~~   74 (108)
                      ..+.|+|.+.+|.... +.+++++||.++-+.+..+.+    +.  .....-|.+..      ..|....+|.+..
T Consensus         2 ~~~~~~V~l~dg~~~~-~~~~~~~t~~ev~~~v~~~~~----l~--~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~   70 (207)
T smart00295        2 KPRVLKVYLLDGTTLE-FEVDSSTTAEELLETVCRKLG----IR--ESEYFGLQFEDPDEDLSHWLDPAKTLLDQD   70 (207)
T ss_pred             CcEEEEEEecCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC--ccceeEEEEEcCCCCcCeeCCCccCHHHhc
Confidence            4678899999999988 999999999999999999998    53  25555555432      2454455555544

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>smart00666 PB1 PB1 domain

Probab=91.51  E-value=1  Score=27.69  Aligned_cols=46  Identities=15%  Similarity=0.286  Sum_probs=35.8

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG   61 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G   61 (108)
                      +.||++.  |..+..+.++++.|-.+|+.+|....+    ..   ....+|-|..
T Consensus         2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~----~~---~~~~~l~Y~D   47 (81)
T smart00666        2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFG----LD---NQSFTLKYQD   47 (81)
T ss_pred             ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhC----CC---CCCeEEEEEC
Confidence            4566666  434444999999999999999999998    44   5788888874

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=91.46  E-value=1  Score=27.76  Aligned_cols=48  Identities=15%  Similarity=0.135  Sum_probs=37.9

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG   61 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G   61 (108)
                      ++.||++..++.... +.+..+.|..+|+++|...++    .+   ....+|-|..
T Consensus         1 t~~vK~~~~~~~~~~-~~~~~~~s~~~L~~~i~~~~~----~~---~~~~~l~Y~D   48 (84)
T PF00564_consen    1 TVRVKVRYGGDIRRI-ISLPSDVSFDDLRSKIREKFG----LL---DEDFQLKYKD   48 (84)
T ss_dssp             SEEEEEEETTEEEEE-EEECSTSHHHHHHHHHHHHHT----TS---TSSEEEEEEE
T ss_pred             CEEEEEEECCeeEEE-EEcCCCCCHHHHHHHHHHHhC----CC---CccEEEEeeC
Confidence            356777666655443 889999999999999999999    44   6899998875

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=91.33  E-value=0.92  Score=29.15  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=33.5

Q ss_pred             eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923           18 DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK   62 (108)
Q Consensus        18 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk   62 (108)
                      ++. +++.+..+..+|+++|.++..    ++   ++..+|-|.-.
T Consensus        12 tIa-Irvp~~~~y~~L~~ki~~kLk----l~---~e~i~LsYkde   48 (80)
T cd06406          12 TVA-IQVARGLSYATLLQKISSKLE----LP---AEHITLSYKSE   48 (80)
T ss_pred             EEE-EEcCCCCCHHHHHHHHHHHhC----CC---chhcEEEeccC
Confidence            777 999999999999999999998    77   78999999765

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=91.00  E-value=2.1  Score=26.00  Aligned_cols=57  Identities=16%  Similarity=0.245  Sum_probs=39.4

Q ss_pred             eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEec
Q 033923           22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLR   92 (108)
Q Consensus        22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~   92 (108)
                      ++++...||.+|.+.+..+++......   ....++.-+|+...+     +.-+.+++      .+.++..
T Consensus        20 ~~~~~~~tv~~ll~~l~~~~~~~~~~~---~~~~~v~vNg~~v~~-----~~~l~~gD------~v~i~pp   76 (80)
T cd00754          20 LELPEGATVGELLDALEARYPGLLEEL---LARVRIAVNGEYVRL-----DTPLKDGD------EVAIIPP   76 (80)
T ss_pred             EECCCCCcHHHHHHHHHHHCchHHHhh---hhcEEEEECCeEcCC-----CcccCCCC------EEEEeCC
Confidence            788888999999999999876200001   456778888988863     44567777      6655543

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=89.88  E-value=1.1  Score=27.88  Aligned_cols=64  Identities=13%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             EEEEEEeC------CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            7 IELKFRLA------DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         7 i~i~~r~~------~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      +.|+|++.      .|.....++++...||++|++.|....|.   .. ..-....+..+|+...++     .-+.+|+
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~---l~-~~~~~~~vavN~~~v~~~-----~~l~dgD   71 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPS---LE-EVRSCCVLALNEEYTTES-----AALKDGD   71 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChh---HH-HHhhCcEEEECCEEcCCC-----cCcCCCC
Confidence            45666663      45433348888899999999999887652   11 001224466778776543     3456676

>smart00455 RBD Raf-like Ras-binding domain

Probab=88.05  E-value=2.3  Score=26.29  Aligned_cols=45  Identities=20%  Similarity=0.151  Sum_probs=38.5

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG   61 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G   61 (108)
                      .++-+.+|+.+. +.+.|..||.++-+.+-++.+    +.   ++...+...|
T Consensus         2 ~~v~LP~~~~~~-V~vrpg~tl~e~L~~~~~kr~----l~---~~~~~v~~~g   46 (70)
T smart00455        2 CKVHLPDNQRTV-VKVRPGKTVRDALAKALKKRG----LN---PECCVVRLRG   46 (70)
T ss_pred             eEEECCCCCEEE-EEECCCCCHHHHHHHHHHHcC----CC---HHHEEEEEcC
Confidence            456678999988 999999999999999999999    76   7777777755

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=88.05  E-value=1.7  Score=30.10  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=36.4

Q ss_pred             EeCC-cchHHHHHHHHHhhCCCCCcCCC---CCCCceEEEEcC-----------------ccc---CCCCcccccCCCCC
Q 033923           23 KFSP-TTTVASLKEKIISRWPKEKENGP---KTVNNVQLIHAG-----------------KIL---EDNMTIAESRLPVV   78 (108)
Q Consensus        23 ~v~~-~~TV~~LK~~I~~~~~~~~~i~p---~~~~~qRLIy~G-----------------k~L---~D~~tL~~~~i~~~   78 (108)
                      .++. +.||++|++.+.+.-..+..++|   -..+.+++++..                 -+|   .|+.+|.+||+.++
T Consensus        21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE  100 (122)
T PF10209_consen   21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE  100 (122)
T ss_pred             cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence            3676 99999999998876443222333   124556665542                 255   67788888888876

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=86.53  E-value=2.8  Score=26.19  Aligned_cols=47  Identities=17%  Similarity=0.211  Sum_probs=35.9

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG   61 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G   61 (108)
                      +++-+.+|.... +.+.|.+||.++-+++-++.+    +.|+ .-.+++...+
T Consensus         2 ~~V~LPng~~t~-V~vrpg~ti~d~L~~~c~kr~----l~~~-~~~v~~~~~~   48 (72)
T cd01760           2 CRVYLPNGQRTV-VPVRPGMSVRDVLAKACKKRG----LNPE-CCDVFLLGLD   48 (72)
T ss_pred             EEEECcCCCeEE-EEECCCCCHHHHHHHHHHHcC----CCHH-HEEEEEecCC
Confidence            466789999887 999999999999999999999    7633 3334444444

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=86.30  E-value=2.8  Score=26.69  Aligned_cols=39  Identities=18%  Similarity=0.262  Sum_probs=29.1

Q ss_pred             CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923           15 DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA   60 (108)
Q Consensus        15 ~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~   60 (108)
                      .|..+. +.++++++..+|+++|....+    +.  +.....|-|.
T Consensus         8 ~~d~~r-~~l~~~~~~~~L~~~i~~r~~----~~--~~~~f~LkY~   46 (82)
T cd06407           8 GEEKIR-FRLPPSWGFTELKQEIAKRFK----LD--DMSAFDLKYL   46 (82)
T ss_pred             CCeEEE-EEcCCCCCHHHHHHHHHHHhC----CC--CCCeeEEEEE
Confidence            344555 999999999999999999988    33  1256666554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=85.38  E-value=6.6  Score=24.19  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=38.6

Q ss_pred             CCCeeeeeEeCCc-chHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923           15 DGADIGPSKFSPT-TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus        15 ~g~~~~~l~v~~~-~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .|.....++++.. .||.+|++.|.+..+.   ... ....+++..+|+...+     +.-+++++
T Consensus        13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~---l~~-~~~~~~v~vn~~~v~~-----~~~l~dgD   69 (80)
T TIGR01682        13 AGTDEETLELPDESTTVGELKEHLAKEGPE---LAA-SRGQVMVAVNEEYVTD-----DALLNEGD   69 (80)
T ss_pred             hCCCeEEEECCCCCcCHHHHHHHHHHhCch---hhh-hccceEEEECCEEcCC-----CcCcCCCC
Confidence            4554334788876 8999999999998762   210 0356778888988875     34567776

The C-terminal Gly-Gly of this model is critical to function.

>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e

Probab=84.43  E-value=3.8  Score=34.80  Aligned_cols=81  Identities=26%  Similarity=0.386  Sum_probs=47.3

Q ss_pred             ceEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCc--CCCCCCCceEEEE--c--Cc-ccCCCC-------
Q 033923            5 DLIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKE--NGPKTVNNVQLIH--A--GK-ILEDNM-------   68 (108)
Q Consensus         5 ~~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~--i~p~~~~~qRLIy--~--Gk-~L~D~~-------   68 (108)
                      .++.|.+....+  ..+. +.|-..|||.++|++|-...-....  ..|. ++++-|-+  +  |+ +|.|..       
T Consensus       188 ~~ltl~v~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavyk~~p~S~rp~-~~d~dLEwr~~~~~~~iL~D~D~ts~~~~  265 (539)
T PF08337_consen  188 KTLTLNVVPQEEGSEEIP-VKVLDCDTITQVKEKILDAVYKNTPYSQRPR-ADDVDLEWRQGRGGRLILQDEDSTSKVEG  265 (539)
T ss_dssp             -EEEEEEECTTTSSTCEE-EEEETTSBHHHHHHHHHHHHTTTS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred             EEEEEEEEecCCCCceEE-EEEEecCcccHHHHHHHHHHHcCCCCCCCCC-ccccceeeecCCCCcccccCCCCCcccCC
Confidence            456666554322  3344 8888999999999999864221111  1244 66666633  2  23 676653       


Q ss_pred             ------cccccCCCCCCCCCcceEEEEEecC
Q 033923           69 ------TIAESRLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        69 ------tL~~~~i~~~~~~~~~~tvhlv~~~   93 (108)
                            ||+.|+|++|.      +|-|+.+.
T Consensus       266 ~wkrLNTL~HY~V~dga------~vaLv~k~  290 (539)
T PF08337_consen  266 GWKRLNTLAHYKVPDGA------TVALVPKQ  290 (539)
T ss_dssp             TEEE--BHHHHT--TTE------EEEEEES-
T ss_pred             CceEeccHhhcCCCCCc------eEEEeecc
Confidence                  56779999986      77777765

g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=83.26  E-value=3.2  Score=32.31  Aligned_cols=59  Identities=22%  Similarity=0.143  Sum_probs=41.2

Q ss_pred             eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCC-CCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923           18 DIGPSKFSPTTTVASLKEKIISRWPKEKENGPK-TVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus        18 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~-~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .++....+.+.||+++++++..+.-.   +.|. .....|+--+|+-|.|+.+|++|+...+.
T Consensus        13 ~~~~~~~s~~~ti~d~~~~~~~~~~k---~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~   72 (297)
T KOG1639|consen   13 RIKEKDLSGSETIDDLLKAISAKNLK---ITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA   72 (297)
T ss_pred             eeeeecCCCCCcHHHHHHHHHHhhhc---cCccchhheeeccCCCccccchhHHHHhccCCCC
Confidence            33336677889999999888876543   4421 12334445579999999999999987664

>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes

Probab=83.20  E-value=3.2  Score=26.18  Aligned_cols=55  Identities=18%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             EEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC
Q 033923            9 LKFRLADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR   74 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~   74 (108)
                      |.+|..+.++...+.++ ...+|.+||+.|.++....   .   ..+.-|     .|-|.+|-++|.
T Consensus         1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~lg---~---~~dfdL-----~i~na~t~eeY~   56 (74)
T PF08783_consen    1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKLG---K---GTDFDL-----VIYNAQTGEEYK   56 (74)
T ss_dssp             EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT---------TTTEEE-----EEEESSS--EE-
T ss_pred             CeEEecccCCccEEEECCCeeEHHHHHHHHHHHhCCC---c---CCcCCE-----EEECCCCCCccC
Confidence            34566666665557776 5789999999998765421   2   344444     334555655664

The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=81.77  E-value=6.5  Score=23.54  Aligned_cols=51  Identities=22%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923           22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus        22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      +.+....||++|.+.+..+++.-.  .   ....++..+|++..+ . -.+..+++++
T Consensus        16 ~~~~~~~tv~~ll~~l~~~~p~~~--~---~~~~~v~vN~~~v~~-~-~~~~~l~~gD   66 (77)
T PF02597_consen   16 IEVPEGSTVRDLLEALAERYPELA--L---RDRVAVAVNGEIVPD-D-GLDTPLKDGD   66 (77)
T ss_dssp             EEESSTSBHHHHHHHHCHHTGGGH--T---TTTEEEEETTEEEGG-G-TTTSBEETTE
T ss_pred             EecCCCCcHHHHHHHHHhhccccc--c---CccEEEEECCEEcCC-c-cCCcCcCCCC
Confidence            788899999999999999887321  2   488999999999987 2 4445566776

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=81.08  E-value=7.6  Score=23.51  Aligned_cols=45  Identities=13%  Similarity=0.155  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC
Q 033923            8 ELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG   61 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G   61 (108)
                      .||++.. |.... +.+. .+.|..+|+++|.+..+    ..   ....+|-|..
T Consensus         2 ~vK~~~~-~~~~~-~~~~~~~~s~~~L~~~i~~~~~----~~---~~~~~l~y~D   47 (81)
T cd05992           2 RVKVKYG-GEIRR-FVVVSRSISFEDLRSKIAEKFG----LD---AVSFKLKYPD   47 (81)
T ss_pred             cEEEEec-CCCEE-EEEecCCCCHHHHHHHHHHHhC----CC---CCcEEEEeeC
Confidence            4556555 34455 8888 99999999999999998    44   3566776654

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=80.37  E-value=2.5  Score=34.04  Aligned_cols=65  Identities=23%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---cccC--CCCcccccCCCCC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---KILE--DNMTIAESRLPVV   78 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---k~L~--D~~tL~~~~i~~~   78 (108)
                      -.|.||+.+|...- ..+-++++|..|=.-...+..+   ..   -...+|+++-   |.|.  -+.|+.++||.+.
T Consensus       278 t~i~vR~pdG~R~q-rkf~~sepv~ll~~~~~s~~dg---~~---k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS  347 (356)
T KOG1364|consen  278 TSIQVRFPDGRRKQ-RKFLKSEPVQLLWSFCYSHMDG---SD---KKRFKLVQAIPASKTLDYGADATFKEAGLANS  347 (356)
T ss_pred             eEEEEecCCccHHH-HhhccccHHHHHHHHHHHhhcc---cc---cccceeeecccchhhhhccccchHHHhccCcc
Confidence            45999999998765 7778899999887777765543   34   6889999998   6663  4689999999965

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=80.06  E-value=11  Score=23.10  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccc
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIA   71 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~   71 (108)
                      +++-+.+|+... +.+.|..||.+.-+.+-+..+    +.|. .-.+++.-..+.|..+...+
T Consensus         3 ~~v~LP~~q~t~-V~vrpg~ti~d~L~~~~~kr~----L~~~-~~~V~~~~~~k~l~~~~d~~   59 (71)
T PF02196_consen    3 CRVHLPNGQRTV-VQVRPGMTIRDALSKACKKRG----LNPE-CCDVRLVGEKKPLDWDQDSS   59 (71)
T ss_dssp             EEEEETTTEEEE-EEE-TTSBHHHHHHHHHHTTT------CC-CEEEEEEEEEEEE-TTSBGG
T ss_pred             EEEECCCCCEEE-EEEcCCCCHHHHHHHHHHHcC----CCHH-HEEEEEcCCCccccCCCcee
Confidence            567789999887 999999999999999999998    6633 33333333556665554443

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
1se9_A	126	Structure Of At3g01050, A Ubiquitin-Fold Protein Fr		3e-25
2gow_A	125	Solution Structure Of Bc059385 From Homo Sapiens Le		1e-05
1wgh_A	116	Solution Structure Of Mouse Ubiquitin-Like 3 Protei		2e-05

>pdb|1SE9|A Chain A, Structure Of At3g01050, A Ubiquitin-Fold Protein From Arabidopsis Thaliana Length = 126

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 69/93 (74%)
Query: 7   IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
           +E+KFRL DG+DIGP  F   TTV++LKE +IS WP+EKENGPKTV  V+LI AGK+LE+
Sbjct: 17  LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 76
Query: 67  NMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
           + T+ + R PV  L G   TMHV+++  + +K+
Sbjct: 77  SKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 109

>pdb|2GOW|A Chain A, Solution Structure Of Bc059385 From Homo Sapiens Length = 125

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 5   DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
           D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+ G+ 
Sbjct: 16  DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 74
Query: 64  LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
           L  N+T+   +LP     G    MH+V R +LP+       N
Sbjct: 75  LHGNVTLGALKLPF----GKTTVMHLVARETLPEPNSQGQRN 112

>pdb|1WGH|A Chain A, Solution Structure Of Mouse Ubiquitin-Like 3 Protein Length = 116

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 5   DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGKI 63
           D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+ G+ 
Sbjct: 15  DMINLRLILVSGK-TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 73
Query: 64  LEDNMTIAESRLPVVELPGTAITMHVVLRPSLPD 97
           L  N+T+   +LP     G    MH+V R +LP+
Sbjct: 74  LHGNVTLGALKLPF----GKTTVMHLVARETLPE 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	3e-42
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	7e-30
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	4e-28
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	3e-08
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-07
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	2e-07
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	2e-07
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-07
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	5e-07
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	5e-07
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	8e-07
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	9e-07
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-06
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	3e-06
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-06
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	3e-06
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	3e-06
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	6e-06
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	8e-06
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	1e-05
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	1e-05
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	2e-05
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-05
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	3e-05
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	4e-05
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	5e-05
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	6e-05
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	7e-05
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	8e-05
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-04
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	1e-04
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	1e-04
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	1e-04
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-04
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	2e-04
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	3e-04
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	3e-04
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	3e-04
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	8e-04
1we6_A	111	Splicing factor, putative; structural genomics, ub	9e-04

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score =  134 bits (337), Expect = 3e-42
 Identities = 50/98 (51%), Positives = 70/98 (71%)

Query: 2   AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61
              + +E+KFRL DG+DIGP  F   TTV++LKE +IS WP+EKENGPKTV  V+LI AG
Sbjct: 12  EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAG 71

Query: 62  KILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
           K+LE++ T+ + R PV  L G   TMHV+++  + +K+
Sbjct: 72  KVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 109

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score =  102 bits (256), Expect = 7e-30
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 4   EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGK 62
            D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+ G+
Sbjct: 15  ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGR 73

Query: 63  ILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHNH 106
            L  N+T+   +LP     G    MH+V R +LP+       N 
Sbjct: 74  FLHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRNR 113

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 97.8 bits (243), Expect = 4e-28
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 4   EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGK 62
            D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+ G+
Sbjct: 14  ADMINLRLILVSGKT-KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGR 72

Query: 63  ILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHN 105
            L  N+T+   +LP     G    MH+V R +LP+       +
Sbjct: 73  FLHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRS 111

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
              T+V  LK +I      +       ++ + L++ G I  +   + +           
Sbjct: 17 LEQGTSVLDLKSQI-----SQDMGFE--IDMMTLVNNGFIAPNTELVTDDV--------- 60

Query: 84 AITMHVVLRP 93
            T ++ L+ 
Sbjct: 61 --TYYLSLKL 68

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 4/68 (5%), Positives = 8/68 (11%), Gaps = 13/68 (19%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
             T V            +E +                   +    +             
Sbjct: 18 EEFTPVVLATPIP-----EEVQQAQ--TEIKLFNKWSFEEVEVKDASLVDYV------QV 64

Query: 85 ITMHVVLR 92
               V  
Sbjct: 65 RQPIFVAH 72

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 2  AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG 61
             D +E+  +  D              V   KE I         + P      +LI+ G
Sbjct: 1  GEPDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQG 52

Query: 62 KILEDNMTIAESRLPVVELPGTAITMHVVLRP 93
          ++L+D+  + E  +           +H+V R 
Sbjct: 53 RVLQDDKKLQEYNV-------GGKVIHLVERA 77

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 44.2 bits (104), Expect = 2e-07
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 23  KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82
                 +V  LK  +   +P+          + +LI++GK+L D+  + +    ++    
Sbjct: 25  SGDRGWSVGHLKAHLSRVYPERPR-----PEDQRLIYSGKLLLDHQCLRD----LLPKQE 75

Query: 83  TAITMHVVLRPSLPDKKG 100
               +H+V         G
Sbjct: 76  KRHVLHLVCNVKSGPSSG 93

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 43.0 bits (102), Expect = 4e-07
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          +P +TV   KE I      +    P  V N +LI++GKIL+D+ T+    +      G  
Sbjct: 21 APESTVLQFKEAI-----NKANGIP--VANQRLIYSGKILKDDQTVESYHIQ----DGH- 68

Query: 85 ITMHVVLRP 93
           ++H+V   
Sbjct: 69 -SVHLVKSQ 76

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 42.7 bits (101), Expect = 5e-07
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 13/69 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
             T++  LKE +      +++  P   + +++I AGK L +++T+    L         
Sbjct: 18 DSDTSILQLKEVV-----AKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLE------QQ 64

Query: 85 ITMHVVLRP 93
            +H+V RP
Sbjct: 65 SIVHIVQRP 73

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 25  SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
           +P +TV   KE I      +    P  V N +LI++GKIL+D+ T+    +      G  
Sbjct: 45  APESTVLQFKEAI-----NKANGIP--VANQRLIYSGKILKDDQTVESYHI----QDGH- 92

Query: 85  ITMHVVLRP 93
            ++H+V   
Sbjct: 93  -SVHLVKSQ 100

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 42.3 bits (100), Expect = 8e-07
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 13/69 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
               V++LK+ +      EK N P  V   +L+  GK L D   +++  +     P + 
Sbjct: 25 PEDELVSTLKQLV-----SEKLNVP--VRQQRLLFKGKALADGKRLSDYSIG----PNS- 72

Query: 85 ITMHVVLRP 93
            +++V++P
Sbjct: 73 -KLNLVVKP 80

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 42.3 bits (100), Expect = 9e-07
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 14/69 (20%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
                V   KE I         + P      +LI+ G++L+D+  + E  +        
Sbjct: 34 VGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-------G 79

Query: 84 AITMHVVLR 92
             +H+V R
Sbjct: 80 GKVIHLVER 88

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 41.5 bits (98), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQ--LIHAGKILEDNMTIAE 72
            P  TV  LKEKI      E E G          LI+AGKIL D++ I +
Sbjct: 22 MEPDETVKVLKEKI------EAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 66

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 40.7 bits (96), Expect = 3e-06
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 13/69 (18%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
            PT  V  +KE++     +EKE  P      +LI++GK + D  T A+ ++        
Sbjct: 17 IEPTDKVERIKERV-----EEKEGIP--PQQQRLIYSGKQMNDEKTAADYKI------LG 63

Query: 84 AITMHVVLR 92
             +H+VL 
Sbjct: 64 GSVLHLVLA 72

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 41.2 bits (97), Expect = 3e-06
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          + T T+  LKE+I      ++       + + LI AGKIL+D  ++A+  +         
Sbjct: 39 TDTCTIQQLKEEI-----SQRFKAH--PDQLVLIFAGKILKDPDSLAQCGV------RDG 85

Query: 85 ITMHVVLRP 93
          +T+H+V++ 
Sbjct: 86 LTVHLVIKR 94

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 40.9 bits (96), Expect = 3e-06
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 13/68 (19%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          +   TVA +K  +        E       +  ++ AG  LED  T+ +  +         
Sbjct: 35 TGQETVAQIKAHV-----ASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVE------AL 81

Query: 85 ITMHVVLR 92
           T+ V  R
Sbjct: 82 TTLEVAGR 89

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 41.1 bits (97), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQ--LIHAGKILEDNMTIAE 72
            P  TV +LKEKI      E E G          LI+AGKIL D+  + E
Sbjct: 17 IDPEETVKALKEKI------ESEKGKDAFPVAGQKLIYAGKILNDDTALKE 61

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 40.4 bits (95), Expect = 6e-06
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 13/68 (19%)

Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
            ++V   KE+I      ++       + + LI AGKIL+D  T+++  +      G   
Sbjct: 43 ENSSVQQFKEEI-----SKRFKSH--TDQLVLIFAGKILKDQDTLSQHGI----HDGL-- 89

Query: 86 TMHVVLRP 93
          T+H+V++ 
Sbjct: 90 TVHLVIKT 97

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 40.1 bits (94), Expect = 8e-06
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          +  + V   K++I      +  +     + + LI  GKIL D   +++  +         
Sbjct: 34 AENSNVRRFKKQI-----SKYLHCN--ADRLVLIFTGKILRDQDILSQRGI------LDG 80

Query: 85 ITMHVVLRP 93
           T+HVV+R 
Sbjct: 81 STVHVVVRS 89

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          + T T+  LKE+I      ++       + + LI AGKIL+D  ++A+  +         
Sbjct: 34 TDTCTIQQLKEEI-----SQRFKAH--PDQLVLIFAGKILKDPDSLAQCGV------RDG 80

Query: 85 ITMHVVLRP 93
          +T+H+V++ 
Sbjct: 81 LTVHLVIKR 89

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72
            P  TV  LKEKI      EK      V   +LI+AGKIL D++ I +
Sbjct: 24 MEPDETVKVLKEKI----EAEKGRDAFPVAGQKLIYAGKILSDDVPIRD 68

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72
          P+ T+   K K+      +  +     + ++LI++GK+L+D+ T++E
Sbjct: 20 PSNTILETKTKL-----AQSISCE--ESQIKLIYSGKVLQDSKTVSE 59

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 7  IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
           +L+ RL+ G D+       T TV  +K ++        E       + +   +G+ L D
Sbjct: 24 CQLRLRLSTGKDL-KLVVRSTDTVFHMKRRL-----HAAEGVE--PGSQRWFFSGRPLTD 75

Query: 67 NMTIAESRLPVVELPGTAITMHVVLRPSLP 96
           M   E ++P          + V++   + 
Sbjct: 76 KMKFEELKIP----KDY--VVQVIVSQPVQ 99

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 13/69 (18%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
            PT  V  +KE++     +EKE  P      +LI++GK + D  T A+ ++        
Sbjct: 17 IEPTDKVERIKERV-----EEKEGIP--PQQQRLIYSGKQMNDEKTAADYKI------LG 63

Query: 84 AITMHVVLR 92
             +H+VL 
Sbjct: 64 GSVLHLVLA 72

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
            T TVA LK+++        E      +   L   GK LED + + E  L     P + 
Sbjct: 22 RLTQTVAHLKQQV-----SGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLK----PLS- 69

Query: 85 ITMHVVLR 92
           T+ + LR
Sbjct: 70 -TVFMNLR 76

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 37.6 bits (88), Expect = 5e-05
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-ILEDNMTIAE 72
               T+  +K+KI     +  ++ P  V+   LI  G  IL +++T+ +
Sbjct: 27 VDYRDTLLVVKQKI-----ERSQHIP--VSKQTLIVDGIVILREDLTVEQ 69

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNM-TIAE 72
            T TV+SLK+KI        EN P  +  +QL ++G  L D+   + E
Sbjct: 32 DRTETVSSLKDKI-----HIVENTP--IKRMQLYYSGIELADDYRNLNE 73

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 37.3 bits (87), Expect = 7e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          S  T V  L+ KI     +E  +        +L + GK +ED  T+ +  +         
Sbjct: 22 SRLTKVEELRRKI-----QELFHVE--PGLQRLFYRGKQMEDGHTLFDYEV------RLN 68

Query: 85 ITMHVVLRPS 94
           T+ +++R S
Sbjct: 69 DTIQLLVRQS 78

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 37.4 bits (87), Expect = 8e-05
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 18/80 (22%)

Query: 24  FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
            S   T+  L+E++         +        +L + GK LE+  T+ +  +        
Sbjct: 26  VSRKATIEELRERV-----WALFDVR--PECQRLFYRGKQLENGYTLFDYDVG----LND 74

Query: 84  AITMHVVLRPSLPDKKGGNT 103
              + +++RP       G +
Sbjct: 75  --IIQLLVRP-----DSGPS 87

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
            T TVA LK+++        E      +   L   GK LED + + E  L     P + 
Sbjct: 22 RLTQTVAHLKQQV-----SGLEG--VQDDLFWLTFEGKPLEDQLPLGEYGLK----PLS- 69

Query: 85 ITMHVVLR 92
           T+ + LR
Sbjct: 70 -TVFMNLR 76

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI 85
             TV  LK  + + +P +         + +L+++G++L D++ + +      E      
Sbjct: 44 LNWTVGKLKTHLSNVYPSKPL-----TKDQRLVYSGRLLPDHLQLKDILRKQDEYH---- 94

Query: 86 TMHVV 90
           +H+V
Sbjct: 95 MVHLV 99

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 13/69 (18%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
           +P + +  LK++I     ++++  P      QL   G++L+D + +    +        
Sbjct: 24 INPNSFILGLKQQI-----EDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQ------D 70

Query: 84 AITMHVVLR 92
          + T+ +  +
Sbjct: 71 SDTLILSKK 79

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 36.5 bits (85), Expect = 1e-04
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 13/68 (19%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
           P+ T+ ++K KI     ++KE  P   +  +LI AGK LED  T+++  +       + 
Sbjct: 18 EPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----RES- 65

Query: 85 ITMHVVLR 92
           T+H+VLR
Sbjct: 66 -TLHLVLR 72

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 13/69 (18%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
            PT  V  +KE++     +EKE  P      +LI++GK + D  T A+ ++      G+
Sbjct: 29 IEPTDKVERIKERV-----EEKEGIP--PQQQRLIYSGKQMNDEKTAADYKIL----GGS 77

Query: 84 AITMHVVLR 92
             +H+VLR
Sbjct: 78 --VLHLVLR 84

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 18/87 (20%)

Query: 25  SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
              ++V   KE I      ++       + + LI AGKIL+D  T+ +  +         
Sbjct: 49  PENSSVQQFKEAI-----SKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGI------HDG 95

Query: 85  ITMHVVLR-----PSLPDKKGGNTHNH 106
           +T+H+V++      S+        H+H
Sbjct: 96  LTVHLVIKRDPNSSSVDKYAAALEHHH 122

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 24  FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
              T  V+ +K KI      E    P      +L + G  ++D+ ++A   +      G 
Sbjct: 52  LPLTDQVSVIKVKI-----HEATGMP--AGKQKLQYEGIFIKDSNSLAYYNM----ASGA 100

Query: 84  AITMHVVLR 92
              +H+ L+
Sbjct: 101 --VIHLALK 107

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72
            + T+ ++K KI      + + G    +  +LI AGK LED  T+++
Sbjct: 18 ESSDTIDNVKSKI------QDKEGI-PPDQQRLIFAGKQLEDGRTLSD 58

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 13/70 (18%)

Query: 23  KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82
           +  P+ T+ ++K KI     ++KE  P   +  +LI AGK LED  T+++  +       
Sbjct: 121 EVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ------ 167

Query: 83  TAITMHVVLR 92
              T+H+VLR
Sbjct: 168 KESTLHLVLR 177

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 34.6 bits (80), Expect = 8e-04
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 13/70 (18%)

Query: 23 KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82
          +  P+ T+ ++K KI     ++KE  P   +  +LI AGK LED  T+++  +       
Sbjct: 19 EVEPSDTIENVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQ----KW 67

Query: 83 TAITMHVVLR 92
          +  T+ ++LR
Sbjct: 68 S--TLFLLLR 75

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 35.2 bits (81), Expect = 9e-04
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 13  LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72
             DG  +  +  S +  V SLKEKI       +   P   N  +L      L+DNM++A 
Sbjct: 37  ENDGQFMEITVQSLSENVGSLKEKI-----AGEIQIP--ANKQKLSGKAGFLKDNMSLAH 89

Query: 73  SRLPVVELPGTAITMHVVLR 92
             +      G    + + LR
Sbjct: 90  YNV----GAGE--ILTLSLR 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.95
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.92
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.92
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.86
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.86
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.86
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.85
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.85
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.84
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.84
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.83
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.83
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.83
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.83
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.83
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.83
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.83
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.82
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.82
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.82
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.82
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.82
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.82
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.82
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.82
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.82
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.82
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.82
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.82
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.82
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.82
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.82
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.81
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.81
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.8
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.8
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.8
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.8
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.79
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.79
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.79
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.79
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.79
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.79
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.79
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.79
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.78
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.78
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.78
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.78
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.78
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.78
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.77
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.77
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.63
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.76
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.76
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.76
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.76
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.75
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.75
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.75
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.74
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.74
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.73
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.72
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.72
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.72
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.71
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.71
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.71
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.7
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.7
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.69
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.68
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.67
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.66
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.65
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.65
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.63
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.6
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.59
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.58
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.57
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.56
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.55
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.52
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.49
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.49
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.48
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.44
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.43
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.42
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.41
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.41
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.29
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.15
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	99.07
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.92
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.59
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.49
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.47
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.47
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.42
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.35
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.26
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	98.13
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.1
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	98.01
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.97
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.89
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.79
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	97.64
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.49
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	97.44
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	96.99
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	96.83
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	96.68
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	96.52
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.83
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	95.23
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	93.9
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	93.07
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	93.01
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	92.77
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	92.66
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	91.68
3ge3_C	84	Toluene-4-monooxygenase system protein B; DIIRON h	90.37
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	89.86
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	88.87
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	88.75
2v1y_A	108	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	88.02
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	86.4
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	85.75
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	85.68
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	85.25
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	84.22
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	84.04
2c7h_A	86	RBBP6, retinoblastoma-binding protein 6, isoform 3	83.29
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	83.07
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	81.23
2inc_C	83	TOUB protein; DIIRON, 4-helix bundle, carboxylate	80.92
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	80.08

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.95  E-value=7.2e-27  Score=160.67  Aligned_cols=96  Identities=52%  Similarity=0.930  Sum_probs=87.0

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ++.++|+||+.+|+++.++++++++||.+||++|++.||.+++.-|+++++|||||+||+|+|+.||++|+|+.+++|+.
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~   93 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   93 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence            57899999999999996699999999999999999999988764444479999999999999999999999999987777


Q ss_pred             ceEEEEEecCCCCCCC
Q 033923           84 AITMHVVLRPSLPDKK   99 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~~   99 (108)
                      +++||||+++++++++
T Consensus        94 v~tmhlVlrl~g~~kk  109 (126)
T 1se9_A           94 VTTMHVIIQAPVTEKE  109 (126)
T ss_dssp             CEEEEEEECCCSSCCC
T ss_pred             cEEEEEEeccCCcccc
Confidence            8899999999988776

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.92  E-value=1.2e-24  Score=149.21  Aligned_cols=94  Identities=28%  Similarity=0.529  Sum_probs=82.9

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCc-CCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKE-NGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~-i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      +...+.|+||+.+|+++. +++++++||++||++|++.||.+|. ..|..+++|||||+||+|+|+.+|++|+|+.++  
T Consensus        14 ~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~--   90 (125)
T 2gow_A           14 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--   90 (125)
T ss_dssp             CTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS--
T ss_pred             CCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC--
Confidence            456799999999999987 9999999999999999999998862 223338999999999999999999999999876  


Q ss_pred             CcceEEEEEecCCCCCCCCC
Q 033923           82 GTAITMHVVLRPSLPDKKGG  101 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~~~~~~  101 (108)
                        .++|||++++.+++++++
T Consensus        91 --~~tlhlv~r~~~~~~~~~  108 (125)
T 2gow_A           91 --TTVMHLVARETLPEPNSQ  108 (125)
T ss_dssp             --EEEEEEEECSCCSSSSSC
T ss_pred             --ceEEEEEecCCCCccccc
Confidence              568999999999888765

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.92  E-value=1.8e-24  Score=146.73  Aligned_cols=95  Identities=27%  Similarity=0.531  Sum_probs=82.2

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCc-CCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKE-NGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~-i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      ++.++|+||+.+|+++. ++|++++||.+||++|++.||.+|. ..|..+++|||||+||+|+|+.+|++|+|+.++   
T Consensus        14 ~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~---   89 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK---   89 (116)
T ss_dssp             SSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred             CCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence            56799999999999988 9999999999999999999998862 112128999999999999999999999998775   


Q ss_pred             cceEEEEEecCCCCCCCCCCC
Q 033923           83 TAITMHVVLRPSLPDKKGGNT  103 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~~~~~~  103 (108)
                       .++|||++++..+.++++..
T Consensus        90 -~~tlhLvlr~~~~~~~~~~~  109 (116)
T 1wgh_A           90 -TTVMHLVARETLPEPNSQGQ  109 (116)
T ss_dssp             -EEEEEEEECSSCSSSCCSSC
T ss_pred             -ceEEEEEccCCCCCCCcccc
Confidence             46899999999888776543

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.86  E-value=9.1e-22  Score=126.19  Aligned_cols=86  Identities=23%  Similarity=0.305  Sum_probs=70.9

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||.+||++|++..+    +|   +++|||+|+|+.|+|+.+|++|+|.+++      +
T Consensus         1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~   66 (88)
T 4fbj_B            1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDEKTAADYKILGGS------V   66 (88)
T ss_dssp             CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred             CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---hhHEEEEECCeECCCCCcHHHcCCCCCC------E
Confidence            47899999999998 999999999999999999998    78   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCCCCCCCCCCCC
Q 033923           87 MHVVLRPSLPDKKGGNTHNH  106 (108)
Q Consensus        87 vhlv~~~~~~~~~~~~~~~~  106 (108)
                      +||+++.+++..-.++-+-|
T Consensus        67 l~l~~rl~Gg~~~~~~~~~~   86 (88)
T 4fbj_B           67 LHLVLALRGGGGLRQKHHHH   86 (88)
T ss_dssp             EEEECBCC------------
T ss_pred             EEEEEECCCCCCCCcccccc
Confidence            99999999998777766555

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.86  E-value=3.6e-21  Score=120.18  Aligned_cols=77  Identities=25%  Similarity=0.222  Sum_probs=72.6

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+||..+|+++. +++++++||.+||++|++..+    +|   +++|||+|+|+.|+|+.+|++|+|.+++     
T Consensus         3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrL~~~G~~L~d~~tL~~~~i~~~~-----   69 (79)
T 3phx_B            3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG----VQ---DDLFWLTFEGKPLEDQLPLGEYGLKPLS-----   69 (79)
T ss_dssp             CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred             CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHhhcC----CC---HHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence            4689999999999998 999999999999999999998    88   8999999999999999999999999997     


Q ss_pred             eEEEEEecCCC
Q 033923           85 ITMHVVLRPSL   95 (108)
Q Consensus        85 ~tvhlv~~~~~   95 (108)
                       ++||+++.++
T Consensus        70 -~l~l~~rl~G   79 (79)
T 3phx_B           70 -TVFMNLRLRG   79 (79)
T ss_dssp             -EEEEEECCBC
T ss_pred             -EEEEEEecCC
Confidence             9999999764

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.86  E-value=3.2e-21  Score=123.23  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=73.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+||..+|+++. +++++++||.+||++|++..+    ++   +++|||||+||.|+|+.+|++|+| +++   
T Consensus         2 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrLi~~Gk~L~d~~tL~~~~i-~g~---   69 (90)
T 4dwf_A            2 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVS----IP---SEKQRLIYQGRVLQDDKKLQEYNV-GGK---   69 (90)
T ss_dssp             CCCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred             CCcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCeECCCCCCHHHcCC-CCc---
Confidence            457899999999999998 999999999999999999998    78   899999999999999999999999 676   


Q ss_pred             cceEEEEEecCCCCCCCC
Q 033923           83 TAITMHVVLRPSLPDKKG  100 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~~~  100 (108)
                         +|||+++.+++....
T Consensus        70 ---~i~l~~~~~~~~~~~   84 (90)
T 4dwf_A           70 ---VIHLVERAPPQTHLP   84 (90)
T ss_dssp             ---EEEEEECCCC-----
T ss_pred             ---EEEEEecCCCCCCCC
Confidence               999999987765543

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.85  E-value=2.7e-21  Score=126.64  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=69.4

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      ++++.++|+|+...|+++. ++++|++||++||++|+++.|    +|   +++|||||+||+|+|+.+|++|+|++|+  
T Consensus        17 ~~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~~k~G----ip---~~qQrLif~Gk~LkD~~TL~dY~I~dgs--   86 (93)
T 3plu_A           17 RGSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLSLQIG----TQ---PNKIVLQKGGSVLKDHISLEDYEVHDQT--   86 (93)
T ss_dssp             ---CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC--
T ss_pred             CCCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHHHHHhC----CC---HHHEEEEeCCEEccCcCCHHHcCCCCCC--
Confidence            4678999999999999998 999999999999999999999    88   9999999999999999999999999997  


Q ss_pred             CcceEEEEE
Q 033923           82 GTAITMHVV   90 (108)
Q Consensus        82 ~~~~tvhlv   90 (108)
                          ++||.
T Consensus        87 ----tLhL~   91 (93)
T 3plu_A           87 ----NLELY   91 (93)
T ss_dssp             ----EEEEE
T ss_pred             ----EEEEE
Confidence                99985

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.85  E-value=6.5e-21  Score=123.02  Aligned_cols=85  Identities=18%  Similarity=0.239  Sum_probs=74.6

Q ss_pred             CCceEEEEEEeCCCC--eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc--CCCCC
Q 033923            3 GEDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES--RLPVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~--~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~--~i~~~   78 (108)
                      +...++|+||..+|.  ++. +++++++||.+||++|++.++..  ++   +++|||||+||.|+|+.+|++|  +|.++
T Consensus         4 ~~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~~~--i~---~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~   77 (93)
T 1wgd_A            4 GSSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPER--PR---PEDQRLIYSGKLLLDHQCLRDLLPKQEKR   77 (93)
T ss_dssp             CSCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTTC--CC---TTTCEEEETTEECCSSSCHHHHSCSSSCS
T ss_pred             CCcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhcCC--CC---hHHeEEEECCEECcCcCCHHHHhcCCCCC
Confidence            456799999999988  666 78889999999999999998211  67   8999999999999999999999  99988


Q ss_pred             CCCCcceEEEEEecCCCCCCC
Q 033923           79 ELPGTAITMHVVLRPSLPDKK   99 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~~~~~~   99 (108)
                      +      +|||+++++++++.
T Consensus        78 ~------~i~lv~~~~gg~~~   92 (93)
T 1wgd_A           78 H------VLHLVCNVKSGPSS   92 (93)
T ss_dssp             E------EEEEECCCCCCCCC
T ss_pred             C------EEEEEeCCCCCCCC
Confidence            6      99999999988664

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.84  E-value=2.9e-20  Score=118.40  Aligned_cols=83  Identities=19%  Similarity=0.310  Sum_probs=76.5

Q ss_pred             CCceEEEEEEeCCC-Ceeeee-EeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923            3 GEDLIELKFRLADG-ADIGPS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         3 ~~~~i~i~~r~~~g-~~~~~l-~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~   80 (108)
                      +...++|+||..+| +++. + ++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++ 
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrL~~~gk~L~d~~tL~~~~i~~g~-   74 (89)
T 1wy8_A            4 GSSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWALFD----VR---PECQRLFYRGKQLENGYTLFDYDVGLND-   74 (89)
T ss_dssp             CSSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHHSC----CC---TTTEEEEETTEECCSSSBHHHHTCCTTC-
T ss_pred             CCCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHHHC----cC---hhhEEEEECCeECCCCCCHHHCCCCCCC-
Confidence            56789999999999 6887 9 59999999999999999998    78   9999999999999999999999999997 


Q ss_pred             CCcceEEEEEecCCCCCCC
Q 033923           81 PGTAITMHVVLRPSLPDKK   99 (108)
Q Consensus        81 ~~~~~tvhlv~~~~~~~~~   99 (108)
                           +|||++++.++.+.
T Consensus        75 -----~i~l~~~~~gG~~~   88 (89)
T 1wy8_A           75 -----IIQLLVRPDSGPSS   88 (89)
T ss_dssp             -----EEEEEECCCCSSCC
T ss_pred             -----EEEEEEeCCCCCCC
Confidence                 99999999987654

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.84  E-value=1.2e-20  Score=119.52  Aligned_cols=80  Identities=24%  Similarity=0.304  Sum_probs=75.0

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      ++..++|+|+..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++   
T Consensus         9 ~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrL~~~G~~L~d~~tL~~~~i~~~~---   77 (88)
T 3dbh_I            9 SGGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDEKTAADYKILGGS---   77 (88)
T ss_dssp             CCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCCEEETTEECCTTSBGGGGTCCTTC---
T ss_pred             CCCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---HHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence            456799999999999998 999999999999999999998    78   8999999999999999999999999997   


Q ss_pred             cceEEEEEecCCCC
Q 033923           83 TAITMHVVLRPSLP   96 (108)
Q Consensus        83 ~~~tvhlv~~~~~~   96 (108)
                         ++||+++.+++
T Consensus        78 ---~i~l~~rl~GG   88 (88)
T 3dbh_I           78 ---VLHLVLRLRGG   88 (88)
T ss_dssp             ---EEEECCCCCCC
T ss_pred             ---EEEEEEeCCCC
Confidence               99999998774

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.6e-20  Score=122.52  Aligned_cols=80  Identities=25%  Similarity=0.307  Sum_probs=73.2

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      ++..++|+||..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++   
T Consensus        19 ~~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i~~g~---   87 (98)
T 4hcn_B           19 QGRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES---   87 (98)
T ss_dssp             ---CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTCBSGGGTCCTTE---
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhC----CC---hhHEEEEECCEECCCCCcHHHCCCCCCC---
Confidence            467799999999999998 999999999999999999998    78   8999999999999999999999999997   


Q ss_pred             cceEEEEEecCCCC
Q 033923           83 TAITMHVVLRPSLP   96 (108)
Q Consensus        83 ~~~tvhlv~~~~~~   96 (108)
                         +|||+++.+++
T Consensus        88 ---~i~l~~rl~GG   98 (98)
T 4hcn_B           88 ---TLHLVLRLRGG   98 (98)
T ss_dssp             ---EEEEECBCSCC
T ss_pred             ---EEEEEEecCCC
Confidence               99999998874

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.83  E-value=3.4e-20  Score=119.05  Aligned_cols=78  Identities=27%  Similarity=0.372  Sum_probs=73.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      .+..++|+|+..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+|+   
T Consensus        14 ~~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~---   82 (91)
T 3v6c_B           14 PRGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES---   82 (91)
T ss_dssp             CCCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhC----CC---hhhEEEEECCeECCCcCcHHHCCCCCCC---
Confidence            467899999999999998 999999999999999999998    88   8999999999999999999999999997   


Q ss_pred             cceEEEEEecCC
Q 033923           83 TAITMHVVLRPS   94 (108)
Q Consensus        83 ~~~tvhlv~~~~   94 (108)
                         ++||+++.+
T Consensus        83 ---~i~l~~rlr   91 (91)
T 3v6c_B           83 ---TLHLVLRLR   91 (91)
T ss_dssp             ---EEEEECCCC
T ss_pred             ---EEEEEEecC
Confidence               999999864

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.83  E-value=2.5e-20  Score=118.62  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+||..+|+++. +++++++||.+||++|++..+    +|   +++|||||+||.|+|+.+|++|+| +|+   
T Consensus        14 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i-~g~---   81 (88)
T 4eew_A           14 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVS----IP---SEKQRLIYQGRVLQDDKKLQEYNV-GGK---   81 (88)
T ss_dssp             -CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred             CCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCEECCCCCcHHHcCC-CCc---
Confidence            456799999999999998 999999999999999999998    78   899999999999999999999999 676   


Q ss_pred             cceEEEEEec
Q 033923           83 TAITMHVVLR   92 (108)
Q Consensus        83 ~~~tvhlv~~   92 (108)
                         ++||+.|
T Consensus        82 ---~i~lv~R   88 (88)
T 4eew_A           82 ---VIHLVER   88 (88)
T ss_dssp             ---EEEEEEC
T ss_pred             ---EEEEEEC
Confidence               9999986

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.83  E-value=4.2e-20  Score=115.94  Aligned_cols=80  Identities=24%  Similarity=0.311  Sum_probs=73.6

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+|+..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++     
T Consensus         2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~----i~---~~~qrL~~~g~~L~d~~tL~~~~i~~~~-----   68 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKWS-----   68 (85)
T ss_dssp             -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred             CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence            5689999999999998 999999999999999999998    78   8999999999999999999999999997     


Q ss_pred             eEEEEEecCCCCCC
Q 033923           85 ITMHVVLRPSLPDK   98 (108)
Q Consensus        85 ~tvhlv~~~~~~~~   98 (108)
                       ++||+++.+++.-
T Consensus        69 -~l~l~~r~~GG~g   81 (85)
T 3mtn_B           69 -TLFLLLRLRGGGG   81 (85)
T ss_dssp             -EEEEECCCCCC--
T ss_pred             -EEEEEEECcCCCC
Confidence             9999999988753

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.83  E-value=1.3e-20  Score=124.94  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      .++++++|+|+...|+++. +++++++||++||++|+++.+    ++   +++|||||+||+|+|+.+|++|+|.+++  
T Consensus        24 ~~~~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia~k~G----ip---~~qQrLi~~Gk~L~D~~TL~dygI~~gs--   93 (100)
T 1uh6_A           24 GAATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTG----TR---WNKIVLKKWYTIFKDHVSLGDYEIHDGM--   93 (100)
T ss_dssp             SCCCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCSSCBHHHHTCCTTE--
T ss_pred             CCCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---HHHEEEEECCEECCCCCCHHHcCCCCCC--
Confidence            3567899999999999998 999999999999999999999    88   9999999999999999999999999986  


Q ss_pred             CcceEEEEEe
Q 033923           82 GTAITMHVVL   91 (108)
Q Consensus        82 ~~~~tvhlv~   91 (108)
                          +|||+-
T Consensus        94 ----tlhL~~   99 (100)
T 1uh6_A           94 ----NLELYY   99 (100)
T ss_dssp             ----EEEEEC
T ss_pred             ----EEEEEe
Confidence                899974

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.83  E-value=5.6e-20  Score=119.62  Aligned_cols=81  Identities=22%  Similarity=0.245  Sum_probs=74.4

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVELP   81 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~~~~   81 (108)
                      --..++|+||...| ++. +++++++||.+||++|++..+    +|   +++|||+|+||.|+|+ .+|++|+|.+++  
T Consensus        12 ~~~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~~tL~~ygI~~gs--   80 (94)
T 2kan_A           12 AVRKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHIVEN----TP---IKRMQLYYSGIELADDYRNLNEYGITEFS--   80 (94)
T ss_dssp             SSCCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHHHSS----SC---TTTEEEEETTEEECCTTSBHHHHTCCTTE--
T ss_pred             CCCCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHEEEEECCEECCCCcccHHHCCCCCCC--
Confidence            34578999999888 777 999999999999999999998    88   9999999999999999 999999999986  


Q ss_pred             CcceEEEEEecCCCCCC
Q 033923           82 GTAITMHVVLRPSLPDK   98 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~~~   98 (108)
                          +|||+++++++++
T Consensus        81 ----tl~lv~r~~gg~~   93 (94)
T 2kan_A           81 ----EIVVFLKSINRAK   93 (94)
T ss_dssp             ----EEEEEECCCSSCC
T ss_pred             ----EEEEEEeCCCCCC
Confidence                9999999988765

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.83  E-value=6.5e-20  Score=116.17  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=75.8

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+|+..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++   
T Consensus         4 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----i~---~~~qrL~~~Gk~L~d~~tL~~~~i~~g~---   72 (87)
T 1wh3_A            4 GSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQQG----LP---KKQQQLEFQGQVLQDWLGLGIYGIQDSD---   72 (87)
T ss_dssp             CSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHHTC----CC---TTTEEEEETTEECCSSSBHHHHTCCTTE---
T ss_pred             CCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHHhC----CC---hHHEEEEECCEEccCCCCHHHCCCCCCC---
Confidence            457899999999999988 999999999999999999998    78   9999999999999999999999999886   


Q ss_pred             cceEEEEEecCCCCC
Q 033923           83 TAITMHVVLRPSLPD   97 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~   97 (108)
                         ++||+++..++.
T Consensus        73 ---~i~l~~~~~GG~   84 (87)
T 1wh3_A           73 ---TLILSKKKGSGP   84 (87)
T ss_dssp             ---EEEEEECSCCCS
T ss_pred             ---EEEEEEeccCCC
Confidence               999999998874

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.82  E-value=2.3e-20  Score=116.52  Aligned_cols=78  Identities=24%  Similarity=0.260  Sum_probs=72.8

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      +.++|+|+..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++     
T Consensus         2 ~~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~~~g----i~---~~~qrL~~~G~~L~d~~tl~~~~i~~~~-----   68 (79)
T 2uyz_B            2 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQG----VP---MNSLRFLFEGQRIADNHTPKELGMEEED-----   68 (79)
T ss_dssp             CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCHHHHTCCTTE-----
T ss_pred             CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHC----CC---cccEEEEECCEEeCCCCCHHHcCCCCCC-----
Confidence            4689999999999998 999999999999999999998    78   8999999999999999999999999997     


Q ss_pred             eEEEEEecCCCC
Q 033923           85 ITMHVVLRPSLP   96 (108)
Q Consensus        85 ~tvhlv~~~~~~   96 (108)
                       ++||+++..++
T Consensus        69 -~i~l~~~~~GG   79 (79)
T 2uyz_B           69 -VIEVYQEQTGG   79 (79)
T ss_dssp             -EEEEEECCCC-
T ss_pred             -EEEEEEeccCC
Confidence             99999998764

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.82  E-value=4.9e-20  Score=118.78  Aligned_cols=80  Identities=26%  Similarity=0.337  Sum_probs=71.8

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||.+||++|++..+    ++   ++.|||+|+|+.|+|+.+|++|+|.+++      +
T Consensus         2 m~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~g----ip---~~~qrL~~~G~~L~d~~tL~~~~i~~~~------~   67 (96)
T 3k9o_B            2 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   67 (96)
T ss_dssp             CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred             cEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhC----CC---hhHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence            68999999999998 999999999999999999998    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCCCCCC
Q 033923           87 MHVVLRPSLPDKKG  100 (108)
Q Consensus        87 vhlv~~~~~~~~~~  100 (108)
                      |||+++.+++.+..
T Consensus        68 i~l~~r~~gG~~~~   81 (96)
T 3k9o_B           68 LHLVLRLRGYADLR   81 (96)
T ss_dssp             EEEEECCCC-----
T ss_pred             EEEEEEcCCCCccc
Confidence            99999998886543

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=2.7e-20  Score=117.02  Aligned_cols=81  Identities=21%  Similarity=0.249  Sum_probs=71.2

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+|+..+|+++. +++++++||.+||++|++.++    +|   +++|||+|+|+.|+|+.+|++|+|.+++     
T Consensus         2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~----ip---~~~qrL~~~g~~L~d~~tL~~~~i~~~~-----   68 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIHNHS-----   68 (85)
T ss_dssp             --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETBEECCTTCBTTTTTCCTTC-----
T ss_pred             CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---HHHEEEEECCeECCCCCCHHHCCCCCCC-----
Confidence            4689999999999998 999999999999999999998    88   8999999999999999999999999997     


Q ss_pred             eEEEEEecCCCCCCC
Q 033923           85 ITMHVVLRPSLPDKK   99 (108)
Q Consensus        85 ~tvhlv~~~~~~~~~   99 (108)
                       ++||+++.+++.-.
T Consensus        69 -~i~l~~rl~GG~g~   82 (85)
T 3n3k_B           69 -ALYLLLKLRGGGGG   82 (85)
T ss_dssp             -EEEEEECCC-----
T ss_pred             -EEEEEEeccCCCCC
Confidence             99999999887544

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.82  E-value=3.9e-20  Score=118.42  Aligned_cols=80  Identities=24%  Similarity=0.196  Sum_probs=70.4

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+||..+|+++. +++++++||.+||++|++..+    +|   +++|||+|+|+.|+|+.+|++|+|.+++     
T Consensus         3 ~~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~~I~~g~-----   69 (88)
T 2hj8_A            3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG----VQ---DDLFWLTFEGKPLEDQLPLGEYGLKPLS-----   69 (88)
T ss_dssp             CEEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHHTC----SC---TTTEEEESSSSCCCTTSBHHHHHCSTTC-----
T ss_pred             ccEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHHhC----CC---hhHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence            3689999999999987 999999999999999999998    88   9999999999999999999999999997     


Q ss_pred             eEEEEEecCCCCCC
Q 033923           85 ITMHVVLRPSLPDK   98 (108)
Q Consensus        85 ~tvhlv~~~~~~~~   98 (108)
                       ++||+.+..+++.
T Consensus        70 -~i~l~~~~~gg~~   82 (88)
T 2hj8_A           70 -TVFMNLRLRGGLE   82 (88)
T ss_dssp             -EEEEEEC------
T ss_pred             -EEEEEEEcCCCcc
Confidence             9999999887653

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3e-20  Score=123.16  Aligned_cols=76  Identities=20%  Similarity=0.332  Sum_probs=69.0

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||..+|+++. +++++++||.+||++|+..++    ++   +++|||||+||.|+|+.+|++|+|.+|+      +
T Consensus         2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~   67 (106)
T 3m62_B            2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQSIS----CE---ESQIKLIYSGKVLQDSKTVSECGLKDGD------Q   67 (106)
T ss_dssp             -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHTTT----SC---GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred             EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---hhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence            68999999999998 999999999999999999998    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      |||+++....
T Consensus        68 i~lv~~~~~~   77 (106)
T 3m62_B           68 VVFMVSQKKS   77 (106)
T ss_dssp             EEEECCC---
T ss_pred             EEEEEcCCCC
Confidence            9999986543

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.82  E-value=3.3e-20  Score=118.46  Aligned_cols=75  Identities=15%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc-cCCCCcccccCCCCCCCCCc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI-LEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~-L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .-+.|+++...|+++. +++++++||++||++|++..+    +|   +++|||||+||. |+|+.+|++|+|.+++    
T Consensus         9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs----   76 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERSQH----IP---VSKQTLIVDGIVILREDLTVEQCQIVPTS----   76 (84)
T ss_dssp             CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred             CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHHHHC----cC---hHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence            3578999999999998 999999999999999999999    88   999999999999 9999999999999997    


Q ss_pred             ceEEEEEecC
Q 033923           84 AITMHVVLRP   93 (108)
Q Consensus        84 ~~tvhlv~~~   93 (108)
                        ++||+++|
T Consensus        77 --~i~lv~~p   84 (84)
T 2kk8_A           77 --DIQLEVSS   84 (84)
T ss_dssp             --CEEEEECC
T ss_pred             --EEEEEEcC
Confidence              89999876

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.82  E-value=2e-20  Score=120.82  Aligned_cols=76  Identities=21%  Similarity=0.513  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCCeeeeeEe--CCcchHHHHHHHH-HhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCC-CCCCCCC
Q 033923            7 IELKFRLADGADIGPSKF--SPTTTVASLKEKI-ISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPG   82 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v--~~~~TV~~LK~~I-~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i-~~~~~~~   82 (108)
                      ++|+||..+|+++. +++  ++++||.+||++| ++..+    +|   +++|||||+||+|+|+.+|++|+| +++.   
T Consensus         2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~y~I~~~~s---   70 (87)
T 2lxa_A            2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKA----SH---ISEIKLLLKGKVLHDNLFLSDLKVTPANS---   70 (87)
T ss_dssp             CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHTTSC----SS---STTEEEEETTEECCTTCBHHHHCCCGGGC---
T ss_pred             EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHHhcC----CC---hHHEEEEECCEECcCcCCHHHcCCCCCCC---
Confidence            78999999999887 764  4999999999999 77777    78   999999999999999999999999 5776   


Q ss_pred             cceEEEEEecCCCC
Q 033923           83 TAITMHVVLRPSLP   96 (108)
Q Consensus        83 ~~~tvhlv~~~~~~   96 (108)
                         ++||+.+|...
T Consensus        71 ---tl~v~~~~~~~   81 (87)
T 2lxa_A           71 ---TITVMIKPNLE   81 (87)
T ss_dssp             ---EEEEEECCCCC
T ss_pred             ---EEEEEcCCCcc
Confidence               99999998754

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.82  E-value=6.7e-20  Score=112.51  Aligned_cols=76  Identities=24%  Similarity=0.307  Sum_probs=70.0

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||++||++|++..+    ++   ++.|||+|+|+.|+|+.+|++|+|.+++      +
T Consensus         1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~~----i~---~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~   66 (76)
T 1ndd_A            1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEG----IP---PQQQRLIYSGKQMNDEKTAADYKILGGS------V   66 (76)
T ss_dssp             CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred             CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence            47899999999988 999999999999999999998    78   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++++.+++
T Consensus        67 i~l~~~~~GG   76 (76)
T 1ndd_A           67 LHLVLALRGG   76 (76)
T ss_dssp             EEEEECCC--
T ss_pred             EEEEEeCCCC
Confidence            9999998764

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=7.1e-20  Score=121.33  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             CCceEEEEEEeCC----CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCC
Q 033923            3 GEDLIELKFRLAD----GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~----g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~   78 (108)
                      ++....|.|++.+    ++.+. +++++++||.+||++|++..+    +|   +++|||||+||+|+|+.||++|+|+++
T Consensus        12 ~tg~ati~V~~~~~~~~~~~~~-lev~~~~TV~~lK~kI~~k~g----ip---~~qQrLI~~GKiL~D~~TL~~y~I~~g   83 (100)
T 1wju_A           12 TTGIATIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAETFG----LQ---ENYIKIVINKKQLQLGKTLEEQGVAHN   83 (100)
T ss_dssp             CCCEEEEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHHTT----CC---STTCEEEETTEECCTTSBHHHHTCCSS
T ss_pred             hcceEEEEEEecCCCCCCcEEE-EEeCCcCHHHHHHHHHHHHHC----cC---HHHeEEEeCCeECCCCCcHHHcCCCCC
Confidence            4556778888887    77887 999999999999999999999    88   999999999999999999999999999


Q ss_pred             CCCCcceEEEEEecCCCCCCC
Q 033923           79 ELPGTAITMHVVLRPSLPDKK   99 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~~~~~~   99 (108)
                      +      +| ++++.++....
T Consensus        84 s------ti-~vl~lrg~~~~   97 (100)
T 1wju_A           84 V------KA-MVLELKQSSGP   97 (100)
T ss_dssp             E------EE-EEECCCCCCCS
T ss_pred             C------EE-EEEEECCCCcc
Confidence            6      78 66666665443

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=8e-20  Score=113.62  Aligned_cols=75  Identities=24%  Similarity=0.323  Sum_probs=70.1

Q ss_pred             eEEEEEEeCCCCee-eeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            6 LIELKFRLADGADI-GPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         6 ~i~i~~r~~~g~~~-~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .++|+|+..+|+++ . ++ +++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++    
T Consensus         2 ~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~~~g----ip---~~~qrL~~~g~~L~d~~tL~~~~i~~g~----   69 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQELFH----VE---PGLQRLFYRGKQMEDGHTLFDYEVRLND----   69 (78)
T ss_dssp             CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTTTTTCCTTC----
T ss_pred             cEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCCCCHHHcCCCCCC----
Confidence            58999999999986 6 99 9999999999999999998    88   9999999999999999999999999997    


Q ss_pred             ceEEEEEecCC
Q 033923           84 AITMHVVLRPS   94 (108)
Q Consensus        84 ~~tvhlv~~~~   94 (108)
                        ++||+++++
T Consensus        70 --~i~l~~r~~   78 (78)
T 2faz_A           70 --TIQLLVRQS   78 (78)
T ss_dssp             --EEEEEECCC
T ss_pred             --EEEEEEeCC
Confidence              999999864

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=8.4e-20  Score=113.80  Aligned_cols=78  Identities=18%  Similarity=0.337  Sum_probs=72.5

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+|+..+|+++. +++++++||++||++|++..+    ++   ++.|||+|+||.|+|+.+|++|+|.+|+   
T Consensus         4 ~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~~~----i~---~~~qrL~~~gk~L~d~~tL~~~~i~~g~---   72 (81)
T 2dzi_A            4 GSSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEKLN----VP---VRQQRLLFKGKALADGKRLSDYSIGPNS---   72 (81)
T ss_dssp             SSSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHHTC----CC---TTTCEEEETTEECCTTSBGGGGTCCSSB---
T ss_pred             CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence            567899999999999887 999999999999999999998    78   8999999999999999999999999997   


Q ss_pred             cceEEEEEecCC
Q 033923           83 TAITMHVVLRPS   94 (108)
Q Consensus        83 ~~~tvhlv~~~~   94 (108)
                         ++|++++++
T Consensus        73 ---~i~l~~~~~   81 (81)
T 2dzi_A           73 ---KLNLVVKPL   81 (81)
T ss_dssp             ---CCEEECCCC
T ss_pred             ---EEEEEEeCC
Confidence               899998863

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.82  E-value=4.5e-20  Score=120.37  Aligned_cols=79  Identities=24%  Similarity=0.254  Sum_probs=74.2

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ...++|+|+..+|+++. +++++++||.+||++|++..+    ++   +++|||||+|+.|+|+.+|++|+|.+++    
T Consensus        19 ~~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~~~g----ip---~~~qrLif~Gk~L~d~~tl~dy~i~~g~----   86 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQG----VP---MNSLRFLFEGQRIADNHTPKELGMEEED----   86 (97)
T ss_dssp             CCEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCHHHHTCCTTC----
T ss_pred             CCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----CC---hhhEEEEECCeEcCCCCCHHHCCCCCCC----
Confidence            34699999999999998 999999999999999999999    88   8999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCC
Q 033923           84 AITMHVVLRPSLP   96 (108)
Q Consensus        84 ~~tvhlv~~~~~~   96 (108)
                        +|||+++.+++
T Consensus        87 --~I~l~~~~~GG   97 (97)
T 1wyw_B           87 --VIEVYQEQTGG   97 (97)
T ss_dssp             --EEEEEESSSCC
T ss_pred             --EEEEEEecCCC
Confidence              99999998764

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.82  E-value=2.3e-19  Score=116.34  Aligned_cols=79  Identities=25%  Similarity=0.310  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhh---CCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISR---WPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~---~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ++|+||..+|+.+. +++++++||.+||++|+..   .+    ++   +++|||||+||.|+|+.+|++|+|.+++    
T Consensus         1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~ygI~~g~----   68 (95)
T 1uel_A            1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDA----FP---VAGQKLIYAGKILNDDTALKEYKIDEKN----   68 (95)
T ss_dssp             CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHCTTT----CC---TTTEEEEETTEECCTTSBGGGGTCCSSS----
T ss_pred             CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcccCC----CC---hhhEEEEECCEECCCcCcHHHCCCCCCC----
Confidence            47899999999998 9999999999999999998   55    77   8999999999999999999999999997    


Q ss_pred             ceEEEEEecCCCCCCC
Q 033923           84 AITMHVVLRPSLPDKK   99 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~~   99 (108)
                        ++||+++...+.+.
T Consensus        69 --~i~l~~~~~~~~~~   82 (95)
T 1uel_A           69 --FVVVMVTKPKAVST   82 (95)
T ss_dssp             --EEEEEESSCCCCCC
T ss_pred             --EEEEEEeCCCCCCC
Confidence              99999987555444

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.82  E-value=1.2e-19  Score=111.31  Aligned_cols=76  Identities=28%  Similarity=0.373  Sum_probs=71.2

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||++||++|++..+    ++   +++|||+|+|+.|+|+.+|++|++.+++      +
T Consensus         1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~~~----i~---~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~   66 (76)
T 3a9j_A            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQRES------T   66 (76)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTGGGTCCTTC------E
T ss_pred             CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCeECCCCCcHHHcCCCCCC------E
Confidence            47899999999987 999999999999999999998    78   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++++..++
T Consensus        67 i~l~~~~~GG   76 (76)
T 3a9j_A           67 LHLVLRLRGG   76 (76)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEeCCCC
Confidence            9999998774

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.82  E-value=1.8e-19  Score=113.50  Aligned_cols=77  Identities=26%  Similarity=0.325  Sum_probs=69.1

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhh---CCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR---WPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~---~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      ..++|+|+..+|+++. +++++++||.+||++|++.   .+    ++   +++|||+|+|+.|+|+.+|++|+|.+++  
T Consensus         4 ~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~i~~g~--   73 (85)
T 2wyq_A            4 MAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDA----FP---VAGQKLIYAGKILSDDVPIRDYRIDEKN--   73 (85)
T ss_dssp             CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHCTTT----CC---GGGEEEEETTEECCTTSBGGGGCCCTTS--
T ss_pred             ceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhccccC----CC---HHHeEEEECCEECcCCCCHHHcCCCCCC--
Confidence            4689999999999998 9999999999999999998   55    77   8999999999999999999999999997  


Q ss_pred             CcceEEEEEecCCC
Q 033923           82 GTAITMHVVLRPSL   95 (108)
Q Consensus        82 ~~~~tvhlv~~~~~   95 (108)
                          ++||+.++..
T Consensus        74 ----~i~l~~~~~~   83 (85)
T 2wyq_A           74 ----FVVVMVTKTK   83 (85)
T ss_dssp             ----EEEEEEC---
T ss_pred             ----EEEEEEcCCC
Confidence                9999998653

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.81  E-value=1.5e-19  Score=119.00  Aligned_cols=78  Identities=21%  Similarity=0.510  Sum_probs=67.9

Q ss_pred             CCceEEEEEEeCCCCeeeee--EeCCcchHHHHHHHH-HhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCC-CCC
Q 033923            3 GEDLIELKFRLADGADIGPS--KFSPTTTVASLKEKI-ISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l--~v~~~~TV~~LK~~I-~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i-~~~   78 (108)
                      ....++|+|++.+|+.+. +  ++++++||++||++| ++..+    ++   +++|||||+||.|+|+.+|++|+| +++
T Consensus        16 ~~~~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dy~I~~~g   87 (98)
T 4a20_A           16 DNAAVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKA----SH---ISEIKLLLKGKVLHDNLFLSDLKVTPAN   87 (98)
T ss_dssp             --CCEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHTTSC----SC---GGGEEEEETTEEECTTCBGGGSCCBTTB
T ss_pred             CCCCEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHHhcC----CC---hhhEEEEECCEECcCcCCHHHcCcCCCC
Confidence            356799999999999765 5  667999999999999 66656    77   999999999999999999999999 888


Q ss_pred             CCCCcceEEEEEecCC
Q 033923           79 ELPGTAITMHVVLRPS   94 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~   94 (108)
                      +      +|||+++.+
T Consensus        88 ~------ti~lmvskp   97 (98)
T 4a20_A           88 S------TITVMIKPN   97 (98)
T ss_dssp             C------EEEEEECCC
T ss_pred             C------EEEEEEeCC
Confidence            7      999998754

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.81  E-value=1.1e-19  Score=116.36  Aligned_cols=78  Identities=28%  Similarity=0.364  Sum_probs=68.3

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      .++|+++..+|+++. +++++++||++||++|++..+    +|   ++.|||+|+||.|+|+.+|++|+|.+++      
T Consensus         9 ~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------   74 (88)
T 1sif_A            9 GLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------   74 (88)
T ss_dssp             -CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBSGGGTCCTTC------
T ss_pred             ceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCCCcHHHcCCCCCC------
Confidence            478999999999998 999999999999999999998    78   8999999999999999999999999997      


Q ss_pred             EEEEEecCCCCC
Q 033923           86 TMHVVLRPSLPD   97 (108)
Q Consensus        86 tvhlv~~~~~~~   97 (108)
                      ++||+++.+++.
T Consensus        75 ~i~l~~r~~GG~   86 (88)
T 1sif_A           75 TLHLVLRLRGGG   86 (88)
T ss_dssp             EEEEEC------
T ss_pred             EEEEEEeCCCCC
Confidence            999999998764

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.80  E-value=2.5e-19  Score=119.53  Aligned_cols=78  Identities=27%  Similarity=0.342  Sum_probs=73.1

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+|+..+|+++. +++++++||.+||++|++..+    +|   +++|||+|+||.|.|+.+|++|+|.+++     
T Consensus        34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~gI~~gs-----  100 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES-----  100 (111)
T ss_dssp             GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTTTTTCCTTC-----
T ss_pred             ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhC----CC---hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence            4699999999999998 999999999999999999998    78   8999999999999999999999999997     


Q ss_pred             eEEEEEecCCCC
Q 033923           85 ITMHVVLRPSLP   96 (108)
Q Consensus        85 ~tvhlv~~~~~~   96 (108)
                       +|||+++.+++
T Consensus       101 -~I~l~~rl~GG  111 (111)
T 3vdz_A          101 -TLHLVLRLRGG  111 (111)
T ss_dssp             -EEEEEECCCC-
T ss_pred             -EEEEEEecCCC
Confidence             99999998864

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.80  E-value=2.9e-19  Score=118.17  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=73.9

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ...++|+||..+|+++. +++++++||.+||++|+...+    ++   +++|||+|+||.|+|+.+|++|+|.+++    
T Consensus        21 ~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~ygI~~g~----   88 (106)
T 1ttn_A           21 GYECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAAEG----VE---PGSQRWFFSGRPLTDKMKFEELKIPKDY----   88 (106)
T ss_dssp             CCSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHTTC----CC---STTCEEEETTEECCTTSHHHHCCCSSSC----
T ss_pred             CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHHC----cC---cccEEEEECCEECCCCCcHHHcCCCCCC----
Confidence            34689999999999988 999999999999999999998    88   8999999999999999999999999997    


Q ss_pred             ceEEEEEecCCCCCC
Q 033923           84 AITMHVVLRPSLPDK   98 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~   98 (108)
                        +|||+.+.....+
T Consensus        89 --ti~lv~~~~~~~~  101 (106)
T 1ttn_A           89 --VVQVIVSQPVQNP  101 (106)
T ss_dssp             --EEEEECCCSSCC-
T ss_pred             --EEEEEEeCCCCCC
Confidence              9999998766543

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.80  E-value=8.4e-20  Score=120.40  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             CceEEEEEEeCCCC--eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCccccc--CCCCCC
Q 033923            4 EDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAES--RLPVVE   79 (108)
Q Consensus         4 ~~~i~i~~r~~~g~--~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~--~i~~~~   79 (108)
                      ...++|+||+.+|+  ++. +++++++||++||++|+++++.   ++ + +++|||||+||+|+|+.+|++|  +|++++
T Consensus        21 ~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~g---~p-p-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~   94 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYPS---KP-L-TKDQRLVYSGRLLPDHLQLKDILRKQDEYH   94 (99)
T ss_dssp             --CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHSTT---CC-C-TTTCCEEETTEEECTTSBTHHHHTTTCSEE
T ss_pred             CCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhcC---CC-C-hhhEEEEECCEECCCCCCHHHHhcCCCCCC
Confidence            45699999999998  666 8999999999999999997642   33 2 6999999999999999999999  999886


Q ss_pred             CCCcceEEEEE
Q 033923           80 LPGTAITMHVV   90 (108)
Q Consensus        80 ~~~~~~tvhlv   90 (108)
                            +||||
T Consensus        95 ------tihLv   99 (99)
T 2kdb_A           95 ------MVHLV   99 (99)
T ss_dssp             ------EEEEC
T ss_pred             ------EEEeC
Confidence                  99986

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.80  E-value=1.7e-19  Score=116.70  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=74.5

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      ....++|+|+.. |+++. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++   
T Consensus        14 ~~~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~---   81 (96)
T 1wx8_A           14 SSRIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKYLH----CN---ADRLVLIFTGKILRDQDILSQRGILDGS---   81 (96)
T ss_dssp             CSCEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHHTC----SC---TTTBCCEETTEECCTTSCHHHHTCCTTE---
T ss_pred             CCCcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCEECCCcCCHHHCCCCCCC---
Confidence            456799999998 88887 999999999999999999998    88   8999999999999999999999999986   


Q ss_pred             cceEEEEEecCCCCCC
Q 033923           83 TAITMHVVLRPSLPDK   98 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~   98 (108)
                         +|||+++..+++.
T Consensus        82 ---~i~l~~~~~~g~~   94 (96)
T 1wx8_A           82 ---TVHVVVRSHSGPS   94 (96)
T ss_dssp             ---EEECCBCCSSCSS
T ss_pred             ---EEEEEEeCCCCCC
Confidence               9999999887654

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.79  E-value=8.9e-19  Score=113.79  Aligned_cols=77  Identities=27%  Similarity=0.368  Sum_probs=71.5

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||..+|+++. +++++++||++||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++      +
T Consensus         1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~g----i~---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~   66 (98)
T 1yx5_B            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (98)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHTC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCCCCHHHcCCCCCC------E
Confidence            47899999999987 999999999999999999998    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCCC
Q 033923           87 MHVVLRPSLPD   97 (108)
Q Consensus        87 vhlv~~~~~~~   97 (108)
                      +||+.+..++.
T Consensus        67 i~l~~~~~gG~   77 (98)
T 1yx5_B           67 LHLVLRLRGGR   77 (98)
T ss_dssp             EEEEECCCCC-
T ss_pred             EEEEEeCCCCC
Confidence            99999988654

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.79  E-value=7.5e-19  Score=116.91  Aligned_cols=80  Identities=24%  Similarity=0.266  Sum_probs=74.7

Q ss_pred             ceEEEEEEeC---CCCeeeeeEeCC-cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923            5 DLIELKFRLA---DGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         5 ~~i~i~~r~~---~g~~~~~l~v~~-~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~   80 (108)
                      ..++|+|++.   +|+.+. +++++ ++||.+||++|+...+    ++   +++|||+|+|++|+|+.+|++|+|.+++ 
T Consensus        26 ~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~~~g----ip---~~~QrL~~~Gk~L~D~~tL~~y~I~~g~-   96 (111)
T 1we6_A           26 GPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGEIQ----IP---ANKQKLSGKAGFLKDNMSLAHYNVGAGE-   96 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHHTT----CC---TTTSEEECSSSBCCTTSBTTTTTCSSSC-
T ss_pred             CcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHHHHC----CC---HHHeEEEECCEECCCCCcHHHCCCCCCC-
Confidence            5689999998   888888 99998 9999999999999998    88   9999999999999999999999999997 


Q ss_pred             CCcceEEEEEecCCCCCC
Q 033923           81 PGTAITMHVVLRPSLPDK   98 (108)
Q Consensus        81 ~~~~~tvhlv~~~~~~~~   98 (108)
                           +|||+++.+++++
T Consensus        97 -----~l~l~~r~~GGk~  109 (111)
T 1we6_A           97 -----ILTLSLRERSGPS  109 (111)
T ss_dssp             -----EEEEECSSCCSSC
T ss_pred             -----EEEEEEEcCCCCC
Confidence                 9999999998854

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.79  E-value=8.7e-19  Score=108.20  Aligned_cols=72  Identities=25%  Similarity=0.333  Sum_probs=67.5

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+. +|+.+. +++++++||++||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+|+      +
T Consensus         5 m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~~~----i~---~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~   69 (77)
T 2bwf_A            5 LNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANG----IP---VANQRLIYSGKILKDDQTVESYHIQDGH------S   69 (77)
T ss_dssp             EEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred             EEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHhC----CC---HHHEEEEECCeEcCCCCCHHHcCCCCCC------E
Confidence            7899999 898887 999999999999999999988    78   8999999999999999999999999997      9


Q ss_pred             EEEEecC
Q 033923           87 MHVVLRP   93 (108)
Q Consensus        87 vhlv~~~   93 (108)
                      +|++.++
T Consensus        70 i~l~~~~   76 (77)
T 2bwf_A           70 VHLVKSQ   76 (77)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9998865

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.79  E-value=8e-19  Score=117.79  Aligned_cols=81  Identities=25%  Similarity=0.282  Sum_probs=75.5

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+++..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++     
T Consensus         8 ~~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~ygI~~gs-----   74 (114)
T 2kdi_A            8 GEFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIWAGKQLEDGRTLSDYNIQRES-----   74 (114)
T ss_dssp             CCCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTTTTTCCSSC-----
T ss_pred             CcEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence            4689999999999998 999999999999999999998    88   9999999999999999999999999997     


Q ss_pred             eEEEEEecCCCCCCC
Q 033923           85 ITMHVVLRPSLPDKK   99 (108)
Q Consensus        85 ~tvhlv~~~~~~~~~   99 (108)
                       +|||+.+.+++...
T Consensus        75 -tI~l~~~~~GG~~~   88 (114)
T 2kdi_A           75 -TLHLVLRLRGGSMG   88 (114)
T ss_dssp             -EEEEEECCCSSCCC
T ss_pred             -EEEEEEEcCCCcee
Confidence             99999999887543

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.79  E-value=3.8e-19  Score=115.17  Aligned_cols=76  Identities=21%  Similarity=0.151  Sum_probs=69.4

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+|+.  |+++. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++     
T Consensus        18 ~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~y~I~~gs-----   82 (93)
T 2l7r_A           18 GSMQLFVRA--QELHT-FEVTGQETVAQIKAHVASLEG----IA---PEDQVVLLAGAPLEDEATLGQCGVEALT-----   82 (93)
T ss_dssp             --CEEEEES--SSEEE-EECCSSCBHHHHHHHHHHHHT----CC---GGGCEEEETTEECCTTSBHHHHTCCSSC-----
T ss_pred             CcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHHHhC----cC---hhHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence            457899988  88887 999999999999999999998    78   9999999999999999999999999997     


Q ss_pred             eEEEEEecCCCC
Q 033923           85 ITMHVVLRPSLP   96 (108)
Q Consensus        85 ~tvhlv~~~~~~   96 (108)
                       +|||+++.+++
T Consensus        83 -tI~lv~rl~GG   93 (93)
T 2l7r_A           83 -TLEVAGRMLGG   93 (93)
T ss_dssp             -EEEEECCCCCC
T ss_pred             -EEEEEEecCCC
Confidence             99999998874

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.79  E-value=7.1e-19  Score=125.29  Aligned_cols=80  Identities=25%  Similarity=0.322  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|++++      +
T Consensus         1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~y~I~~gs------t   66 (169)
T 3l0w_B            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (169)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---TTTEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred             CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHHC----cC---HHHEEEEECCccccCcCcHHHcCCCCCC------E
Confidence            47999999999998 999999999999999999998    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCCCCCC
Q 033923           87 MHVVLRPSLPDKKG  100 (108)
Q Consensus        87 vhlv~~~~~~~~~~  100 (108)
                      +||+++.+++.+.+
T Consensus        67 I~Lvlrl~GG~k~~   80 (169)
T 3l0w_B           67 LHLVLRLRGGGGET   80 (169)
T ss_dssp             EEEEECCCC---CC
T ss_pred             EEEEEEeccccccc
Confidence            99999999886654

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.79  E-value=8.9e-19  Score=117.32  Aligned_cols=81  Identities=16%  Similarity=0.206  Sum_probs=74.2

Q ss_pred             ceEEEEEEeCC----------CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccC
Q 033923            5 DLIELKFRLAD----------GADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESR   74 (108)
Q Consensus         5 ~~i~i~~r~~~----------g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~   74 (108)
                      ..|+|+|+..+          |+++. +++++++||.+||++|+...+    ++   +++|||+|+|+.|+|+.+|++|+
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrL~~~Gk~L~D~~tL~~y~   95 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEATG----MP---AGKQKLQYEGIFIKDSNSLAYYN   95 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHHSS----CC---TTTEEEEETTEEECTTSBHHHHT
T ss_pred             CCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHHHC----CC---hHHEEEEECCEECCCCCCHHHCC
Confidence            47889999864          66787 999999999999999999998    88   99999999999999999999999


Q ss_pred             CCCCCCCCcceEEEEEecCCCCCCC
Q 033923           75 LPVVELPGTAITMHVVLRPSLPDKK   99 (108)
Q Consensus        75 i~~~~~~~~~~tvhlv~~~~~~~~~   99 (108)
                      |.+++      +|||+++.++++++
T Consensus        96 i~~g~------~i~lv~rl~GGk~~  114 (115)
T 1we7_A           96 MASGA------VIHLALKERSGPSS  114 (115)
T ss_dssp             CCSSC------EEEEEECCCSCCSC
T ss_pred             CCCCC------EEEEEEEcCCCCCC
Confidence            99997      99999999998765

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=8.7e-19  Score=115.64  Aligned_cols=81  Identities=26%  Similarity=0.344  Sum_probs=73.6

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+|+..+|+ +. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++   
T Consensus        14 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~gi~~g~---   81 (106)
T 1wx7_A           14 DPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFK----AH---PDQLVLIFAGKILKDPDSLAQCGVRDGL---   81 (106)
T ss_dssp             CSSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHHHT----CC---TTTEEEEETTEECCTTSCHHHHTCCTTE---
T ss_pred             CCceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCcCcHHHcCCCCCC---
Confidence            467799999999886 66 999999999999999999998    78   8999999999999999999999999886   


Q ss_pred             cceEEEEEecCCCCCC
Q 033923           83 TAITMHVVLRPSLPDK   98 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~   98 (108)
                         +|||+++..++..
T Consensus        82 ---~i~l~~~~~~~~~   94 (106)
T 1wx7_A           82 ---TVHLVIKRQHRAM   94 (106)
T ss_dssp             ---EEEEEECCCCCSC
T ss_pred             ---EEEEEEcCCCCCC
Confidence               9999999877654

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=7.3e-19  Score=115.47  Aligned_cols=81  Identities=26%  Similarity=0.345  Sum_probs=73.6

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      ....++|+|+..+|+ +. +++++++||.+||++|++..+    ++   +++|||||+||.|+|+.+|++|+|.+++   
T Consensus        19 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~ygI~~gs---   86 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFK----AH---PDQLVLIFAGKILKDPDSLAQCGVRDGL---   86 (100)
T ss_dssp             CTTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBHHHHTCCTTC---
T ss_pred             CCCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCcCcHHHCCCCCCC---
Confidence            356799999999886 66 999999999999999999998    78   8999999999999999999999999997   


Q ss_pred             cceEEEEEecCCCCCC
Q 033923           83 TAITMHVVLRPSLPDK   98 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~   98 (108)
                         +|||+++.++++.
T Consensus        87 ---tI~l~~r~~~~p~   99 (100)
T 1yqb_A           87 ---TVHLVIKRQHRAM   99 (100)
T ss_dssp             ---EEEEEECCCCSCC
T ss_pred             ---EEEEEEcCCCCCC
Confidence               9999999877653

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=114.41  Aligned_cols=79  Identities=22%  Similarity=0.337  Sum_probs=71.8

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+|+.. |+++. +++++++||++||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++   
T Consensus        22 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~gI~~g~---   89 (101)
T 2klc_A           22 HPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISKRFK----SH---TDQLVLIFAGKILKDQDTLSQHGIHDGL---   89 (101)
T ss_dssp             -CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHHHHT----CC---GGGEEEEETTEEECTTCCTGGGTCCTTC---
T ss_pred             CCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHHHHC----cC---hhhEEEEECCEECCCcCcHHHcCCCCCC---
Confidence            446789999998 88887 999999999999999999998    78   8999999999999999999999999997   


Q ss_pred             cceEEEEEecCCCC
Q 033923           83 TAITMHVVLRPSLP   96 (108)
Q Consensus        83 ~~~tvhlv~~~~~~   96 (108)
                         +|||+.+.+..
T Consensus        90 ---~I~l~~~~~~~  100 (101)
T 2klc_A           90 ---TVHLVIKTQNR  100 (101)
T ss_dssp             ---EEEEEECCSSC
T ss_pred             ---EEEEEEcCCCC
Confidence               99999987653

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.78  E-value=1.1e-18  Score=121.40  Aligned_cols=79  Identities=24%  Similarity=0.210  Sum_probs=72.3

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+|+..+|+++. +++++++||.+||++|++..+    +|   +++|||+|+|+.|+|+.+|++|+|++++     
T Consensus        80 ~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----ip---~~~q~L~~~G~~L~d~~tL~~y~i~~g~-----  146 (159)
T 3rt3_B           80 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG----VQ---DDLFWLTFEGKPLEDQLPLGEYGLKPLS-----  146 (159)
T ss_dssp             CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred             CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHHHC----CC---HHHEEEEECCeecCCCCCHHHcCCCCCC-----
Confidence            4588999999999998 999999999999999999998    88   9999999999999999999999999997     


Q ss_pred             eEEEEEecCCCCC
Q 033923           85 ITMHVVLRPSLPD   97 (108)
Q Consensus        85 ~tvhlv~~~~~~~   97 (108)
                       ++||+++.+++.
T Consensus       147 -~l~l~~rl~GG~  158 (159)
T 3rt3_B          147 -TVFMNLRLRGGG  158 (159)
T ss_dssp             -EEEEEECCC---
T ss_pred             -EEEEEEecCCCC
Confidence             999999998874

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.78  E-value=4e-19  Score=118.53  Aligned_cols=84  Identities=15%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCC------------CCceEEEEcCcccC-CCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKT------------VNNVQLIHAGKILE-DNM   68 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~------------~~~qRLIy~Gk~L~-D~~   68 (108)
                      .++..++|+|+..+|+++. ++|++++||.+||++|++..+    ++|..            +++|||||+||.|. |+.
T Consensus         3 ~~~~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~~~----i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~   77 (105)
T 1v2y_A            3 SGSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYVQ----LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRK   77 (105)
T ss_dssp             CCCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHH----HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSS
T ss_pred             CCCCcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHHhC----CCcccccCcceeeeeecceeEEEEeCCcCccCCcC
Confidence            4677899999999999998 999999999999999999887    55210            15789999999996 669


Q ss_pred             cccccCCCCCCCCCcceEEEEEecCCCC
Q 033923           69 TIAESRLPVVELPGTAITMHVVLRPSLP   96 (108)
Q Consensus        69 tL~~~~i~~~~~~~~~~tvhlv~~~~~~   96 (108)
                      +|++|+|.+++      +||++.+.++.
T Consensus        78 tL~dygI~~g~------~l~lv~~lr~~   99 (105)
T 1v2y_A           78 KLRDYGIRNRD------EVSFIKKLGQK   99 (105)
T ss_dssp             BHHHHTCCSSE------EEEEEECSCSC
T ss_pred             CHHHcCCCCCC------EEEEEehhccC
Confidence            99999999997      99999998776

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=6.6e-19  Score=119.57  Aligned_cols=81  Identities=25%  Similarity=0.290  Sum_probs=72.6

Q ss_pred             CCceEEEEEEe-CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            3 GEDLIELKFRL-ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         3 ~~~~i~i~~r~-~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      ++..++|+|.+ ..|..+. ++++++.||++||++++...+    +|   ++.|||||+||+|.|++||++|||+++.  
T Consensus        12 ~~~~itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~~~----iP---~e~qrLIy~GKiLKD~eTL~~~gIk~g~--   81 (118)
T 2daf_A           12 EDSLATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHLLG----IP---HSVLQIRYSGKILKNNETLVQHGVKPQE--   81 (118)
T ss_dssp             CSSCEEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHHHT----CC---TTTEEEEETTEEECSSCCHHHHSCCSSC--
T ss_pred             cCccEEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhhhC----CC---hHHEEEEECCeEcCCcchHHHcCCCCCC--
Confidence            56778999985 4677777 999999999999999999988    88   9999999999999999999999999997  


Q ss_pred             CcceEEEEEecCCCCC
Q 033923           82 GTAITMHVVLRPSLPD   97 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~~   97 (108)
                          |+||+++...+.
T Consensus        82 ----TIhLvi~s~~p~   93 (118)
T 2daf_A           82 ----IVQVEIFSTNPD   93 (118)
T ss_dssp             ----EEEEEEEESCTT
T ss_pred             ----EEEEEEecCCCc
Confidence                999999976553

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=1.3e-18  Score=118.72  Aligned_cols=82  Identities=22%  Similarity=0.324  Sum_probs=70.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+|+.. |+++. +++++++||.+||++|+...+    ++   +++|||||+||.|+|+.+|++|+|.+++   
T Consensus        29 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dygI~~gs---   96 (125)
T 1j8c_A           29 EPKIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISKRFK----SQ---TDQLVLIFAGKILKDQDTLIQHGIHDGL---   96 (125)
T ss_dssp             CCCCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHHHHC----SC---SSSEEEEETTEEESTTSCGGGTTCSSSE---
T ss_pred             CCCcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHHHHC----cC---cceEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence            346799999998 88887 999999999999999999998    88   8999999999999999999999999886   


Q ss_pred             cceEEEEEecCCCCCCC
Q 033923           83 TAITMHVVLRPSLPDKK   99 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~~   99 (108)
                         +|||+.+..++...
T Consensus        97 ---tI~lv~~~~gg~~~  110 (125)
T 1j8c_A           97 ---TVHLVIKRDPNSSS  110 (125)
T ss_dssp             ---EEEEEEC-------
T ss_pred             ---EEEEEeccCCCCCC
Confidence               99999998876543

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.77  E-value=2.6e-18  Score=110.97  Aligned_cols=82  Identities=21%  Similarity=0.321  Sum_probs=72.3

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVVEL   80 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~~~   80 (108)
                      .++..++|+|+..+|+.+. +++++++||.+||++|+...          +++|||||+||.|+|+ .+|++|+|.+++ 
T Consensus         3 ~~~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~----------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~-   70 (95)
T 1wia_A            3 SGSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPGQ----------ESQMKLIYQGRLLQDPARTLSSLNITNNC-   70 (95)
T ss_dssp             CCCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSST----------TTTCEEEETTEECCCSSCBTTTTTCCTTE-
T ss_pred             CCCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhhC----------cCcEEEEECCEEccCCcCCHHHcCCCCCC-
Confidence            3577899999999999987 99999999999999998764          4899999999999999 999999999986 


Q ss_pred             CCcceEEEEEecCCCCCCCC
Q 033923           81 PGTAITMHVVLRPSLPDKKG  100 (108)
Q Consensus        81 ~~~~~tvhlv~~~~~~~~~~  100 (108)
                           +|||+++.+.....+
T Consensus        71 -----~i~l~~~~~~~~~~~   85 (95)
T 1wia_A           71 -----VIHCHRSPPGAAVSG   85 (95)
T ss_dssp             -----EEEEECCCCCCCCCC
T ss_pred             -----EEEEEECCCCCCCCC
Confidence                 999999876654443

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.77  E-value=2.6e-18  Score=114.37  Aligned_cols=78  Identities=27%  Similarity=0.342  Sum_probs=72.8

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..++|+|+..+|+.+. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++     
T Consensus        34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~gI~~gs-----  100 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES-----  100 (111)
T ss_dssp             SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---TTTEEEEETTEECCSSCBTTTTTCCTTC-----
T ss_pred             CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHHHC----cC---cccEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence            5799999999999987 999999999999999999998    78   8999999999999999999999999997     


Q ss_pred             eEEEEEecCCCC
Q 033923           85 ITMHVVLRPSLP   96 (108)
Q Consensus        85 ~tvhlv~~~~~~   96 (108)
                       +|||+++.+++
T Consensus       101 -~I~l~~rl~GG  111 (111)
T 2ojr_A          101 -TLHLVLRLRGG  111 (111)
T ss_dssp             -EEEEEECCCC-
T ss_pred             -EEEEEEeCCCC
Confidence             99999998764

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.63  E-value=3.1e-20  Score=114.82  Aligned_cols=75  Identities=21%  Similarity=0.335  Sum_probs=70.0

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++      +
T Consensus         1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g----i~---~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~   66 (76)
T 3b1l_X            1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAKQQG----VP---ADQLRVIFAGKELPNHLTVQNCDLEQQS------I   66 (76)
Confidence            47889999999887 999999999999999999988    78   8999999999999999999999999997      9


Q ss_pred             EEEEecCCC
Q 033923           87 MHVVLRPSL   95 (108)
Q Consensus        87 vhlv~~~~~   95 (108)
                      +||++++++
T Consensus        67 i~l~~rlrg   75 (76)
T 3b1l_X           67 VHIVQRPRR   75 (76)
Confidence            999999875

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.76  E-value=3.9e-18  Score=112.00  Aligned_cols=85  Identities=7%  Similarity=0.094  Sum_probs=74.4

Q ss_pred             CceEEEEEEeCCC----CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCC-CcccccCCCCC
Q 033923            4 EDLIELKFRLADG----ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDN-MTIAESRLPVV   78 (108)
Q Consensus         4 ~~~i~i~~r~~~g----~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~-~tL~~~~i~~~   78 (108)
                      ...++|+|+..++    +.+. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+ .+|++|+|.++
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~gk~L~D~~~tL~~ygI~~g   76 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESG----VP---AEEAQIVYMEQLLTDDHCSLGSYGLKDG   76 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHHTC----CC---GGGBCEEETTEEECCSSSBHHHHTCCTT
T ss_pred             CCeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHHHHC----cC---hHHeEEEECCEECCCCcccHHHCCCCCC
Confidence            4568999999755    6777 999999999999999999999    88   9999999999999988 69999999999


Q ss_pred             CCCCcceEEEEEecCCCCCCCCCC
Q 033923           79 ELPGTAITMHVVLRPSLPDKKGGN  102 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~~~~~~~~~  102 (108)
                      +      +|||+.+.+++......
T Consensus        77 ~------~l~l~~~~~gg~~~~~~   94 (102)
T 1v5o_A           77 D------MVVLLQKDNVGLRTPGR   94 (102)
T ss_dssp             E------EEEECBCCCCCCSSCCC
T ss_pred             C------EEEEEECCCCCCCCCCC
Confidence            7      99999998877655444

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.76  E-value=1.3e-18  Score=118.30  Aligned_cols=79  Identities=16%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             EEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcce
Q 033923            8 ELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAI   85 (108)
Q Consensus         8 ~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~   85 (108)
                      .++|++..++ ++. +++++++||.+||++|+...+    +|   +++|||||+||+|+|+.||++|||..+.+ +.+..
T Consensus         2 ~vFl~Ikr~ktTI~-ldve~sdTV~~lK~kI~~~~g----iP---p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~a   73 (118)
T 4ajy_B            2 DVFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILK----RP---PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPA   73 (118)
T ss_dssp             EEEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCE
T ss_pred             ceEEEEecCCEEEE-EEcCCCChHHHHHHHHHHHHC----CC---HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCC
Confidence            4566666677 555 899999999999999999999    88   99999999999999999999999998322 23345


Q ss_pred             EEEEEecCC
Q 033923           86 TMHVVLRPS   94 (108)
Q Consensus        86 tvhlv~~~~   94 (108)
                      +|||++|..
T Consensus        74 tl~Lvlr~~   82 (118)
T 4ajy_B           74 TVGLAFRAD   82 (118)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEEecC
Confidence            999999963

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.76  E-value=2.7e-18  Score=124.78  Aligned_cols=82  Identities=26%  Similarity=0.298  Sum_probs=76.3

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      -+.++|+|+..+|+++. +++++++||.+||++|++..+    +|   +++|||||+|+.|+|+.+|++|+|.+++    
T Consensus       103 ~~eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~~~g----Ip---~~~QrLi~~Gk~L~D~~tL~dygI~~gs----  170 (189)
T 3q3f_A          103 HYGGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES----  170 (189)
T ss_dssp             CCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCCEEETTEECCTTCBGGGGTCCTTC----
T ss_pred             ccceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHhccC----CC---HHHEEEEECCEECCCCCCHHHCCCCCCC----
Confidence            35689999999999998 999999999999999999998    88   8999999999999999999999999997    


Q ss_pred             ceEEEEEecCCCCCCC
Q 033923           84 AITMHVVLRPSLPDKK   99 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~~   99 (108)
                        +|||+++.+++.+.
T Consensus       171 --tI~LvlrlrGG~~~  184 (189)
T 3q3f_A          171 --TLHLVLRLRGGGQT  184 (189)
T ss_dssp             --EEEECCCCCCCCCC
T ss_pred             --EEEEEEEcCCCCcc
Confidence              99999999987653

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.76  E-value=6.2e-20  Score=129.31  Aligned_cols=82  Identities=27%  Similarity=0.334  Sum_probs=0.4

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||.+||++|++..+    +|   +++|||||+|+.|+|+.+|++|+|.+++      +
T Consensus         1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~dygI~~gs------t   66 (152)
T 3u5c_f            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHhC----CC---HHHEEEEECCEEccccCcHHHcCCCCCC------E
Confidence            47899999999987 999999999999999999998    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCCCCCCCC
Q 033923           87 MHVVLRPSLPDKKGGN  102 (108)
Q Consensus        87 vhlv~~~~~~~~~~~~  102 (108)
                      |||+++..+++++..+
T Consensus        67 L~Lvlrl~GGgKkrkK   82 (152)
T 3u5c_f           67 LHLVLRLRGGGKKRKX   82 (152)
T ss_dssp             ---------------C
T ss_pred             EEEEeeccCCCcCccc
Confidence            9999999999766543

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.75  E-value=6.9e-18  Score=111.78  Aligned_cols=80  Identities=20%  Similarity=0.188  Sum_probs=69.7

Q ss_pred             ceEEEEEEeCCC---CeeeeeEeC--------C-cchHHHHHHHHHhhC--CCCCcCCCCCCCc-eEEEEcCcccCCCCc
Q 033923            5 DLIELKFRLADG---ADIGPSKFS--------P-TTTVASLKEKIISRW--PKEKENGPKTVNN-VQLIHAGKILEDNMT   69 (108)
Q Consensus         5 ~~i~i~~r~~~g---~~~~~l~v~--------~-~~TV~~LK~~I~~~~--~~~~~i~p~~~~~-qRLIy~Gk~L~D~~t   69 (108)
                      ..++|+||..++   ..+. ++|+        + ++||.+||++|+...  +    ++   +++ |||||+||.|+|+.+
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g----ip---~~~~qrLi~~Gk~L~D~~t   82 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQES----VP---DPELIDLIYCGRKLKDDQT   82 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT----CC---CSSSEEEEETTEECCTTCB
T ss_pred             CceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhccC----CC---hhhcEEEEECCeECCCCCc
Confidence            458899999998   7776 8854        4 499999999999999  6    77   899 999999999999999


Q ss_pred             ccccCCCCCCCCCcceEEEEEecCCCCCC
Q 033923           70 IAESRLPVVELPGTAITMHVVLRPSLPDK   98 (108)
Q Consensus        70 L~~~~i~~~~~~~~~~tvhlv~~~~~~~~   98 (108)
                      |++|+|.+++      +|||+.+....+.
T Consensus        83 L~~y~i~~g~------~i~lv~~~~~~~~  105 (107)
T 1x1m_A           83 LDFYGIQPGS------TVHVLRKSWSGPS  105 (107)
T ss_dssp             HHHHTCCTTC------EEEEEESSCCSSC
T ss_pred             HHHcCCCCCC------EEEEEeCCCCCCC
Confidence            9999999997      9999998765443

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1e-18  Score=115.08  Aligned_cols=75  Identities=24%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      +-.+.|+|+. .|+++. +++++++||++||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|++|+    
T Consensus        26 ~m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~gI~~g~----   92 (101)
T 3m63_B           26 AMSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANG----IP---VANQRLIYSGKILKDDQTVESYHIQDGH----   92 (101)
T ss_dssp             ---CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHHHS----CC---STTCCEEETTEECCTTSBTTTTTCCTTE----
T ss_pred             CcEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHHHC----cC---hHHEEEEECCEECCCcCcHHHCCCCCCC----
Confidence            3457788886 888887 999999999999999999998    78   8999999999999999999999999997    


Q ss_pred             ceEEEEEecC
Q 033923           84 AITMHVVLRP   93 (108)
Q Consensus        84 ~~tvhlv~~~   93 (108)
                        +|||+.+.
T Consensus        93 --tI~lv~~~  100 (101)
T 3m63_B           93 --SVHLVKSQ  100 (101)
T ss_dssp             --EEEECCCC
T ss_pred             --EEEEEeCC
Confidence              99999874

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.75  E-value=2e-18  Score=117.38  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             EEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcceE
Q 033923            9 LKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAIT   86 (108)
Q Consensus         9 i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~t   86 (108)
                      ++++...|+ ++. +++++++||.+||++|+...+    +|   +++|||||+||.|+|+.+|++|+|++..+ +-...+
T Consensus         3 mfl~ir~~ktti~-lev~~sdTV~~lK~kI~~~eg----IP---~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~st   74 (118)
T 2fnj_B            3 VFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILK----RP---PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT   74 (118)
T ss_dssp             EEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEE
T ss_pred             EEEEEecCCEEEE-EEeCCcChHHHHHHHHHHHhC----CC---HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCE
Confidence            444444565 466 999999999999999999999    88   99999999999999999999999994111 001249


Q ss_pred             EEEEec
Q 033923           87 MHVVLR   92 (108)
Q Consensus        87 vhlv~~   92 (108)
                      +||++|
T Consensus        75 L~L~lr   80 (118)
T 2fnj_B           75 VGLAFR   80 (118)
T ss_dssp             EEEEEB
T ss_pred             EEEEec
Confidence            999999

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=9.5e-18  Score=109.46  Aligned_cols=78  Identities=9%  Similarity=0.122  Sum_probs=70.5

Q ss_pred             CCCceEEEEEEeCCCCee-eeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADI-GPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~-~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~   80 (108)
                      .+++.++|+|+. .|+.+ . +++++++||.+||++|++..+    ++   +++|||||.||.|+|+ +|++|+|.+++ 
T Consensus         3 ~~~~~m~i~Vk~-~g~~~~~-l~v~~~~TV~~lK~~I~~~tg----ip---~~~QkLi~~Gk~L~D~-tL~~~~I~~g~-   71 (96)
T 1wgg_A            3 SGSSGYSVTVKW-GKEKFEG-VELNTDEPPMVFKAQLFALTG----VQ---PARQKVMVKGGTLKDD-DWGNIKMKNGM-   71 (96)
T ss_dssp             SCCCEEEEEEEE-TTEEEEE-EEEESSSCHHHHHHHHHHHTC----CC---TTTSCCEETTEECCSS-CCCSCCCCSSC-
T ss_pred             CCCcEEEEEEEE-CCEEEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCcCCCCC-CHHHCCCCCCC-
Confidence            356789999996 67777 5 999999999999999999999    88   9999999999999999 99999999997 


Q ss_pred             CCcceEEEEEecCCC
Q 033923           81 PGTAITMHVVLRPSL   95 (108)
Q Consensus        81 ~~~~~tvhlv~~~~~   95 (108)
                           +|||+..+..
T Consensus        72 -----~i~l~~~~~~   81 (96)
T 1wgg_A           72 -----TVLMMGSADA   81 (96)
T ss_dssp             -----EEECCCCCCC
T ss_pred             -----EEEEEecchh
Confidence                 9999988763

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=118.09  Aligned_cols=80  Identities=26%  Similarity=0.342  Sum_probs=73.6

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      ....++|+|+..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++   
T Consensus        17 ~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----ip---~~~QrL~~~g~~L~d~~tL~~~~i~~~~---   85 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES---   85 (172)
T ss_dssp             --CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred             CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEECCccccccCCHhHcCCcccc---
Confidence            456799999999999998 999999999999999999999    88   9999999999999999999999999997   


Q ss_pred             cceEEEEEecCCCC
Q 033923           83 TAITMHVVLRPSLP   96 (108)
Q Consensus        83 ~~~tvhlv~~~~~~   96 (108)
                         ++||+++..++
T Consensus        86 ---~l~l~~~~~gg   96 (172)
T 3u30_A           86 ---TLHLVLRLRGG   96 (172)
T ss_dssp             ---EEEEEECCCCC
T ss_pred             ---eeeeeeccccc
Confidence               99999987654

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=2.9e-17  Score=105.47  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=70.2

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCc-----chHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCC-CCcccccCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPT-----TTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED-NMTIAESRLP   76 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~-----~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D-~~tL~~~~i~   76 (108)
                      ++..+.|+|+. .|+.+. ++++++     +||.+||++|++..+    ++   +++|||+|+||.|.| +.+|++|+|.
T Consensus         4 ~~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~~~g----ip---~~~qrL~~~Gk~L~D~~~~L~~~~i~   74 (92)
T 1wxv_A            4 GSSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEVIG----VP---QSFQKLIFKGKSLKEMETPLSALGIQ   74 (92)
T ss_dssp             CCSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHHTC----CC---TTTCEEEETTEEECCSSSBHHHHTCC
T ss_pred             CCCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHHHHC----cC---HHHEEEEECCeecCCCcccHHHCCCC
Confidence            45679999998 577887 999995     999999999999998    88   999999999999998 5689999999


Q ss_pred             CCCCCCcceEEEEEecCCCCC
Q 033923           77 VVELPGTAITMHVVLRPSLPD   97 (108)
Q Consensus        77 ~~~~~~~~~tvhlv~~~~~~~   97 (108)
                      +++      +|||+.++...+
T Consensus        75 ~g~------~i~l~~~~~~~~   89 (92)
T 1wxv_A           75 DGC------RVMLIGKKNSGP   89 (92)
T ss_dssp             SSE------EEEEESCCSCSC
T ss_pred             CCC------EEEEEecCCCCC
Confidence            886      999998876554

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.72  E-value=1.2e-17  Score=117.87  Aligned_cols=78  Identities=27%  Similarity=0.346  Sum_probs=68.7

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ..+.|+|+..+|+++. +++++++||.+||++|+..++    +|   +++|||+|+|+.|+|+.+|++|+|++++     
T Consensus        95 gg~~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----ip---~~~q~L~~~g~~L~D~~tL~~y~i~~g~-----  161 (172)
T 3u30_A           95 GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES-----  161 (172)
T ss_dssp             CCEEEEEEESSCCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCCEEETTEECCTTSBSGGGTCCTTC-----
T ss_pred             ccccceeecccCccee-EEecCCCCHHHHHHHHHHHhC----CC---ceeEEEEECCccCCCCCcHHHhCCCCCC-----
Confidence            3467888999999998 999999999999999999998    88   9999999999999999999999999997     


Q ss_pred             eEEEEEecCCCC
Q 033923           85 ITMHVVLRPSLP   96 (108)
Q Consensus        85 ~tvhlv~~~~~~   96 (108)
                       ++||+++.+++
T Consensus       162 -tl~l~~rlrgG  172 (172)
T 3u30_A          162 -TLHLVLRLRGG  172 (172)
T ss_dssp             -EEEECC-----
T ss_pred             -EEEEEEecCCC
Confidence             99999998764

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.72  E-value=3.9e-19  Score=121.14  Aligned_cols=77  Identities=26%  Similarity=0.321  Sum_probs=0.5

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||.+||++|++..+    +|   +++|||+|+|+.|+|+.+|++|+|.+++      +
T Consensus         1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~~~I~~gs------t   66 (128)
T 3u5e_m            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhC----cC---hHHEEEEECCEECCCCCchhhhccCCCC------E
Confidence            47899999999998 999999999999999999998    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCCC
Q 033923           87 MHVVLRPSLPD   97 (108)
Q Consensus        87 vhlv~~~~~~~   97 (108)
                      |||+++..++.
T Consensus        67 i~l~~rl~GG~   77 (128)
T 3u5e_m           67 LHLVLRLRGGI   77 (128)
T ss_dssp             ----------C
T ss_pred             EEEEEEcCCCC
Confidence            99999998875

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.72  E-value=4.5e-17  Score=111.43  Aligned_cols=77  Identities=27%  Similarity=0.350  Sum_probs=71.5

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      .+.|+|+..+|+++. +++++++||.+||++|++..+    ++   ++.|||+|+|+.|+|+.+|++|+|.+++      
T Consensus        76 ~~~i~Vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----i~---~~~qrL~~~g~~L~d~~tL~~~~i~~~~------  141 (152)
T 3b08_A           76 GMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------  141 (152)
T ss_dssp             CEEEEEEESSSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------
T ss_pred             ccceeeeecCCCEEE-EEeCCCCcHHHHHHHHHHHhC----cC---hhhEEEEECCEECCCCCCHHHcCCCCCC------
Confidence            478889999999988 999999999999999999988    78   9999999999999999999999999997      


Q ss_pred             EEEEEecCCCC
Q 033923           86 TMHVVLRPSLP   96 (108)
Q Consensus        86 tvhlv~~~~~~   96 (108)
                      ++||+++.+++
T Consensus       142 ~i~l~~r~~GG  152 (152)
T 3b08_A          142 TLHLVLRLRGG  152 (152)
T ss_dssp             EEEEEECCCC-
T ss_pred             EEEEEEecCCC
Confidence            99999998874

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.71  E-value=3.9e-17  Score=108.97  Aligned_cols=75  Identities=17%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             eEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCC-CCCCCCC
Q 033923            6 LIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPG   82 (108)
Q Consensus         6 ~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i-~~~~~~~   82 (108)
                      .++|+|+...+  .++. ++++|++||++||++|++++|    +|   +++|||||+|++|+|+.+|++||| ++|+   
T Consensus        24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~k~G----ip---p~~QRli~ggkll~D~~TL~~ygI~~~G~---   92 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFLDYG----FP---PVLQQWVIGQRLARDQETLHSHGVRQNGD---   92 (105)
T ss_dssp             EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEEECTTCBTGGGTCCSTTC---
T ss_pred             EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHHHHhC----CC---HHHEEEeccCeEccCcCcHHHcCCCCCCC---
Confidence            35666666654  5776 999999999999999999999    88   999999999999999999999999 5887   


Q ss_pred             cceEEEEEecCC
Q 033923           83 TAITMHVVLRPS   94 (108)
Q Consensus        83 ~~~tvhlv~~~~   94 (108)
                         ++||++-..
T Consensus        93 ---t~hL~l~~~  101 (105)
T 4dbg_A           93 ---SAYLYLLSA  101 (105)
T ss_dssp             ---EEEEEECCC
T ss_pred             ---EEEEEEEec
Confidence               999998653

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.71  E-value=5.5e-17  Score=112.82  Aligned_cols=73  Identities=22%  Similarity=0.329  Sum_probs=69.5

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE-E-cCcccCCCCcccccCCCCCCCCCcc
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI-H-AGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI-y-~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ++|+|++.+|+++. +++++++||.+||++|++..+    +|   +++|||+ | +|+.|+|+.+|++|+|.+++     
T Consensus         3 m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----ip---~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~-----   69 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQKIG----VH---AFQQRLAVHPSGVALQDRVPLASQGLGPGS-----   69 (159)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHHHHC----CC---GGGEEEEEETTCCBCCTTSCGGGGTCCTTC-----
T ss_pred             eEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHHHhC----CC---HHHEEEEEcCCCCCCCCCCCHHHcCCCCCC-----
Confidence            78999999999998 999999999999999999999    88   9999999 9 89999999999999999997     


Q ss_pred             eEEEEEecC
Q 033923           85 ITMHVVLRP   93 (108)
Q Consensus        85 ~tvhlv~~~   93 (108)
                       ++||+++.
T Consensus        70 -~l~l~~~~   77 (159)
T 3rt3_B           70 -TVLLVVDK   77 (159)
T ss_dssp             -EEEEEECC
T ss_pred             -EEEEEccC
Confidence             99999984

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.71  E-value=3.2e-17  Score=104.53  Aligned_cols=70  Identities=21%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             EEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEE
Q 033923           10 KFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHV   89 (108)
Q Consensus        10 ~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhl   89 (108)
                      .++..+|+++. +++++++||++||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++      ++||
T Consensus        15 ~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~~~g----ip---~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~l~l   80 (85)
T 2kd0_A           15 LTVKFGGKSIP-LSVSPDCTVKDLKSQLQPITN----VL---PRGQKLIFKGKVLVETSTLKQSDVGSGA------KLML   80 (85)
T ss_dssp             EEEEETTEEEE-EEECTTSBHHHHHHHHHHHHC----CC---TTTCEEEETTEECCTTCBTTTTTCCTTE------EEEE
T ss_pred             EEEEECCEEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEECCeECCCcCCHHHCCCCCCC------EEEE
Confidence            34456888887 999999999999999999998    88   8999999999999999999999999986      8999


Q ss_pred             EecC
Q 033923           90 VLRP   93 (108)
Q Consensus        90 v~~~   93 (108)
                      +..+
T Consensus        81 ~~s~   84 (85)
T 2kd0_A           81 MASQ   84 (85)
T ss_dssp             ECCC
T ss_pred             EEeC
Confidence            8764

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.70  E-value=4.8e-17  Score=104.63  Aligned_cols=78  Identities=15%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             CCceEEEEEEeCCCCeeeee-EeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE---EcCcccCCCCcccccCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l-~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI---y~Gk~L~D~~tL~~~~i~~~   78 (108)
                      +++.++|+|+. .|+++. + ++++++||.+||++|++..+    ++   +++|||+   |+|+.|+|+.+|++|+|.++
T Consensus         4 ~~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~~~~g----ip---~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g   74 (90)
T 1v5t_A            4 GSSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLKTLTG----VL---PERQKLLGLKVKGKPAENDVKLGALKLKPN   74 (90)
T ss_dssp             CCCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHHHHTC----CC---TTTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred             CCceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHHHHHC----cC---HHHeEEEeeccCCcCcCCCCCHHHcCCCCC
Confidence            45678899997 788887 8 99999999999999999999    88   9999999   99999999999999999998


Q ss_pred             CCCCcceEEEEEecCCC
Q 033923           79 ELPGTAITMHVVLRPSL   95 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~~   95 (108)
                      +      +|||+..+..
T Consensus        75 ~------~l~l~~~~~~   85 (90)
T 1v5t_A           75 T------KIMMMGTRES   85 (90)
T ss_dssp             E------EEEEECCCSS
T ss_pred             C------EEEEEecCcc
Confidence            6      9999887653

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.70  E-value=2.7e-17  Score=106.92  Aligned_cols=79  Identities=20%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      .+..++|+|+. .|+++. +++++++||.+||++|++..+    ++   +++|||+|.||.| |+.+|++|+|.+++   
T Consensus        14 ~~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~~~tg----ip---~~~QrL~~~Gk~L-dd~tL~~~~i~~g~---   80 (95)
T 1v86_A           14 GKELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSITG----LP---PAMQKVMYKGLVP-EDKTLREIKVTSGA---   80 (95)
T ss_dssp             CCCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHHHC----SC---STTCCCBSSSBCC-SSSBHHHHCCCTTE---
T ss_pred             CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEEECCeeC-CcCcHHHCCCCCCC---
Confidence            45678999985 577887 999999999999999999999    88   9999999999999 55699999999886   


Q ss_pred             cceEEEEEecCCCCC
Q 033923           83 TAITMHVVLRPSLPD   97 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~   97 (108)
                         +|||+..+...+
T Consensus        81 ---~i~lv~~~~~~~   92 (95)
T 1v86_A           81 ---KIMVVGSTISGP   92 (95)
T ss_dssp             ---EEEECCSSCCCC
T ss_pred             ---EEEEEeccccCC
Confidence               999998775443

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.69  E-value=1.4e-16  Score=108.92  Aligned_cols=76  Identities=28%  Similarity=0.374  Sum_probs=70.6

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+++. +++++++||++||++|++..+    ++   +++|||+|+|+.|+|+.+|++|+|.+++      +
T Consensus         1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g----ip---~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~   66 (152)
T 3b08_A            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (152)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHHC----cC---hHHeEEEECCeECcCcccHHHhccCCCC------e
Confidence            47899999999988 999999999999999999998    78   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +|++.+..++
T Consensus        67 l~l~~~~~~~   76 (152)
T 3b08_A           67 LHLVLRLRGG   76 (152)
T ss_dssp             EEEEECCTTC
T ss_pred             eEEEeecccc
Confidence            9999987654

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.68  E-value=2.1e-16  Score=101.56  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             EEEEEEeC--CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE-------cCcccCCCCcccccCCCC
Q 033923            7 IELKFRLA--DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH-------AGKILEDNMTIAESRLPV   77 (108)
Q Consensus         7 i~i~~r~~--~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy-------~Gk~L~D~~tL~~~~i~~   77 (108)
                      +.|.|...  .....+ .++++++||.+||++|+...|    +|   +++|||||       .|++|+|+.+|++|+|++
T Consensus         3 V~v~iths~~~~~~~E-~r~~~s~TI~~lK~ki~~~~G----ip---~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~   74 (86)
T 4b6w_A            3 VKVSLTHSASRMRVPE-KRYGLAQTIESIKENVFTHFA----TP---PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRD   74 (86)
T ss_dssp             EEEEEEETTCSCCEEE-EEEETTSBHHHHHHHHHTTSC----CC---GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCT
T ss_pred             EEEEEEEcCCCCeEEE-EEcCccCcHHHHHHHHHHHHC----CC---HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCC
Confidence            45555543  333444 999999999999999999999    88   99999997       699999999999999999


Q ss_pred             CCCCCcceEEEEEecCC
Q 033923           78 VELPGTAITMHVVLRPS   94 (108)
Q Consensus        78 ~~~~~~~~tvhlv~~~~   94 (108)
                      |.      ++||+-..+
T Consensus        75 g~------~ihlvd~~P   85 (86)
T 4b6w_A           75 EF------VIHVVDLQP   85 (86)
T ss_dssp             TC------EEEEEECCC
T ss_pred             CC------EEEEEeCCC
Confidence            97      999997654

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.67  E-value=2.8e-16  Score=102.71  Aligned_cols=74  Identities=16%  Similarity=0.131  Sum_probs=65.3

Q ss_pred             CCceEEEEEEeCCCC--eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc--Cc----ccCCCCcccccC
Q 033923            3 GEDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--GK----ILEDNMTIAESR   74 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~--~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~--Gk----~L~D~~tL~~~~   74 (108)
                      ....|.|+|+...+.  .++ +++++++||++||++|+...|    +|   +++|||+|.  |+    +++|+.+|++|+
T Consensus        12 ~~~~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI~~~~G----iP---~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~   83 (95)
T 2kjr_A           12 KSDFIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKLEILTG----GC---AGTMKVQVFKGDTCVSTMDNNDAQLGYYA   83 (95)
T ss_dssp             CCCEEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHHHHHHC----SC---TTTEEEEEEETTEEEEECCCTTSBHHHHC
T ss_pred             CCCeEEEEEEECCCCceEEE-EEeCccCHHHHHHHHHHHHHC----cC---HHHeEEEEecCCcccceeCCCCCCHhHCC
Confidence            467889999987664  676 999999999999999999999    88   999999998  45    359999999999


Q ss_pred             CCCCCCCCcceEEEEE
Q 033923           75 LPVVELPGTAITMHVV   90 (108)
Q Consensus        75 i~~~~~~~~~~tvhlv   90 (108)
                      |++|+      +|||+
T Consensus        84 i~~gs------tihlv   93 (95)
T 2kjr_A           84 NSDGL------RLHVV   93 (95)
T ss_dssp             CSSSC------EEEEE
T ss_pred             cCCCC------EEEEE
Confidence            99997      99987

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.66  E-value=2.6e-16  Score=123.96  Aligned_cols=85  Identities=25%  Similarity=0.364  Sum_probs=72.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...++|+||..+|+++. ++|++++||.+||++|+..++.+. ++   +++|||||+||+|+|+.+|++|+|.+++   
T Consensus         4 ~~~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~~~~g-ip---~~~QrLiy~GK~L~D~~tL~dygI~~gs---   75 (368)
T 1oqy_A            4 GSSAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDA-FP---VAGQKLIYAGKILSDDVPIRDYRIDEKN---   75 (368)
T ss_dssp             --CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTCSSS-CC---STEEEEESSSSEECSSSBTTTTCCCTTS---
T ss_pred             CCceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHhCcCC-CC---hhheEEEECCeecCCcCCHHHcCCCCCC---
Confidence            567799999999999998 999999999999999999643211 67   8999999999999999999999999987   


Q ss_pred             cceEEEEEecCCCCC
Q 033923           83 TAITMHVVLRPSLPD   97 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~   97 (108)
                        +.+|++.+++++.
T Consensus        76 --tIv~lv~k~~~~~   88 (368)
T 1oqy_A           76 --FVVVMVTKTKAGQ   88 (368)
T ss_dssp             --CEEEEEECCCSSS
T ss_pred             --EEEEEEecCCCCC
Confidence              3458998887654

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.65  E-value=5.5e-16  Score=101.77  Aligned_cols=77  Identities=21%  Similarity=0.237  Sum_probs=67.1

Q ss_pred             CCCceEEEEEEeCCC--CeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc---c----cCCCCcccc
Q 033923            2 AGEDLIELKFRLADG--ADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK---I----LEDNMTIAE   72 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g--~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk---~----L~D~~tL~~   72 (108)
                      .|+..+.|.|.....  ..++ +++++++||++||++|+...|    +|   +++|||||.|+   .    ++|+.+|++
T Consensus        10 ~~~~~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kIe~~~G----ip---~~~QrLi~~g~~g~~~~~L~~D~~tL~~   81 (97)
T 2kj6_A           10 HGDDSVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKLWKKCG----TS---VNSMALELYDDSGSKVAVLSDDSRPLGF   81 (97)
T ss_dssp             CCCCCEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHHHHHHC----CC---TTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred             CCCceEEEEEEECCCCceEEE-EEeCCCChHHHHHHHHHHHHC----cC---HHHeEEEEecCCCcccceecCCcCCHHH
Confidence            367889999988554  3676 999999999999999999999    88   99999999984   3    589999999


Q ss_pred             cCCCCCCCCCcceEEEEEec
Q 033923           73 SRLPVVELPGTAITMHVVLR   92 (108)
Q Consensus        73 ~~i~~~~~~~~~~tvhlv~~   92 (108)
                      |+|++|+      +|||+-.
T Consensus        82 Y~I~~g~------~Ihlvd~   95 (97)
T 2kj6_A           82 FSPFDGF------RLHIIDL   95 (97)
T ss_dssp             HCCCSCC------EEEEEEC
T ss_pred             CCCCCCC------EEEEEeC
Confidence            9999997      9999854

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.65  E-value=1.7e-17  Score=120.65  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=2.4

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|++++|+++. ++|++++||.+||++|+...+    +|   +++|||||+|+.|+|+.+|+     +++      +
T Consensus         1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~~keG----IP---~~qQRLIf~GK~LeD~~TLs-----~~S------T   61 (189)
T 2xzm_9            1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQISQDMG----FE---IDMMTLVNNGFIAPNTELVT-----DDV------T   61 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEE-EEECCcChHHHHHHHHHHHhC----cC---hhHEEEEecCeECCCCCccc-----CCC------E
Confidence            57999999999998 999999999999999999998    88   99999999999999999998     555      8


Q ss_pred             EEEEecCCCCCCCC
Q 033923           87 MHVVLRPSLPDKKG  100 (108)
Q Consensus        87 vhlv~~~~~~~~~~  100 (108)
                      |||+++.+++.++.
T Consensus        62 LhLvlRLrGG~~kr   75 (189)
T 2xzm_9           62 YYLSLKLLGGKKKK   75 (189)
T ss_dssp             ----------CCCC
T ss_pred             EEEEEecCCCcccc
Confidence            99999999887653

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.63  E-value=8.5e-16  Score=118.68  Aligned_cols=77  Identities=27%  Similarity=0.386  Sum_probs=69.9

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ...++|+||..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++    
T Consensus       231 ~~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~~~G----Ip---~~~QRLi~~Gk~L~D~~TLsdygI~~gs----  298 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES----  298 (307)
T ss_dssp             CCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCTTSBTGGGTCCTTC----
T ss_pred             CCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHC----cC---hHHEEEEeCCeecCCCCCHHHcCCCCCC----
Confidence            45789999999999997 999999999999999999998    88   9999999999999999999999999997    


Q ss_pred             ceEEEEEecCC
Q 033923           84 AITMHVVLRPS   94 (108)
Q Consensus        84 ~~tvhlv~~~~   94 (108)
                        +|||++|.+
T Consensus       299 --tL~LvlRLr  307 (307)
T 3ai5_A          299 --TLHLVLRLR  307 (307)
T ss_dssp             --EEEEEC---
T ss_pred             --EEEEEEeCC
Confidence              999998863

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.4e-15  Score=96.77  Aligned_cols=71  Identities=18%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             eEEEEEEeCCCCeee-ee-EeCCcchHHHHHHHHHhh-CCCCCcCCCCCCCceEEEEc--CcccCCCCcccccCCCCCCC
Q 033923            6 LIELKFRLADGADIG-PS-KFSPTTTVASLKEKIISR-WPKEKENGPKTVNNVQLIHA--GKILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~-~l-~v~~~~TV~~LK~~I~~~-~~~~~~i~p~~~~~qRLIy~--Gk~L~D~~tL~~~~i~~~~~   80 (108)
                      .++|+|+...|+.+. .+ ++++++||.+||++|++. .+    ++   +++|||+|.  ||.|+|+.+|++|+|.+++ 
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~----i~---~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~s-   81 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ----WY---PARQSLRLDPKGKSLKDEDVLQKLPVGTTA-   81 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS----SC---TTTCCEESSTTSCCCCTTCBTTTSSCCSEE-
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC----CC---hHHeEEEecCCCcCcCCCCCHHHcCCCCCC-
Confidence            489999999887642 37 999999999999999995 55    77   899999977  9999999999999999886 


Q ss_pred             CCcceEEEE
Q 033923           81 PGTAITMHV   89 (108)
Q Consensus        81 ~~~~~tvhl   89 (108)
                           ++|+
T Consensus        82 -----tl~~   85 (88)
T 2dzj_A           82 -----TLYF   85 (88)
T ss_dssp             -----EEEE
T ss_pred             -----EEEE
Confidence                 7765

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.59  E-value=5.1e-15  Score=98.06  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=69.5

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-----------c----cCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-----------I----LED   66 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-----------~----L~D   66 (108)
                      +...+.|+||..+|+. . ++++ +++||.+||++|++..+    ++   +++|||+|.|+           .    ++|
T Consensus         4 ~~~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~~~~g----ip---~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d   74 (107)
T 1wf9_A            4 GSSGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQDQLQ----IP---IHNQTLSTNRNLLLAKSPSDFLAFTDMADP   74 (107)
T ss_dssp             SCCCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHHHHSC----CC---TTTCCCBSSGGGGTCCSHHHHTTCCSSCCT
T ss_pred             CCCeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHHHHhC----cC---cccCEEEECCccccccCccccccccccCCC
Confidence            4456889999999975 5 8999 99999999999999999    88   89999999998           4    589


Q ss_pred             CCcccccCCCCCCCCCcceEEEEEecCCCC
Q 033923           67 NMTIAESRLPVVELPGTAITMHVVLRPSLP   96 (108)
Q Consensus        67 ~~tL~~~~i~~~~~~~~~~tvhlv~~~~~~   96 (108)
                      +.+|++|+|.+|+      +|||+......
T Consensus        75 ~~tL~~~gi~~G~------~L~l~~~~~~~   98 (107)
T 1wf9_A           75 NLRISSLNLAHGS------MVYLAYEGERT   98 (107)
T ss_dssp             TCBGGGTCCCTTC------EEECCCSSCCC
T ss_pred             CCCHHHCCCCCCC------EEEEEeCCCCc
Confidence            9999999999998      99999876443

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.58  E-value=7.3e-15  Score=95.75  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=74.9

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      ..+.|+|+|+..+|+.+. +.+.+++++..|++.++++.+    ++   ++++||+|.|+.|.+++|+++|++.+++   
T Consensus         4 ~~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~~~~g----i~---~~~~rf~FdG~~l~~~~Tp~dl~medgD---   72 (94)
T 2io1_B            4 MNDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED---   72 (94)
T ss_dssp             --CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred             CCCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence            467899999999999998 999999999999999999999    77   8999999999999999999999999998   


Q ss_pred             cceEEEEEecCCCCC
Q 033923           83 TAITMHVVLRPSLPD   97 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~   97 (108)
                         +||++.+..++.
T Consensus        73 ---~Idv~~~~~GG~   84 (94)
T 2io1_B           73 ---TIDVFQQQTGGV   84 (94)
T ss_dssp             ---EEEEEECCEESC
T ss_pred             ---EEEEEEeccCCC
Confidence               999999988873

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=7.8e-15  Score=96.84  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--cCcccCCCCcccccCCCCCCCCCcc
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      +.+++....|+++. +++++++||++||++|++..+    +|   +++|||+|  .|+ |+|+.+|++|+|+.++     
T Consensus         9 m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~~~tg----Ip---p~~QkLi~~~~gk-L~D~~tLs~~~I~~gs-----   74 (100)
T 2dzm_A            9 MLDFRVEYRDRNVD-VVLEDTCTVGEIKQILENELQ----IP---VSKMLLKGWKTGD-VEDSTVLKSLHLPKNN-----   74 (100)
T ss_dssp             EEEEEEECSSCEEE-EEEETTSBHHHHHHHHHHHHC----CC---TTTCCEECCSSSC-CCTTSBHHHHCCCSEE-----
T ss_pred             eEEEEEEeCCeEEE-EEECCCCcHHHHHHHHHHHHC----CC---hhHeEEEccCCCC-CCCcCCHHHcCCCCCC-----
Confidence            34444456888987 999999999999999999999    88   89999997  676 9999999999999886     


Q ss_pred             eEEEEEecCCCC
Q 033923           85 ITMHVVLRPSLP   96 (108)
Q Consensus        85 ~tvhlv~~~~~~   96 (108)
                       +|||+......
T Consensus        75 -tL~lvl~~~~~   85 (100)
T 2dzm_A           75 -SLYVLTPDLPP   85 (100)
T ss_dssp             -EEEECCSSSCC
T ss_pred             -EEEEEecCCCC
Confidence             99999887553

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.56  E-value=3.1e-14  Score=92.17  Aligned_cols=75  Identities=13%  Similarity=0.098  Sum_probs=63.8

Q ss_pred             ceEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---c----ccCCCCcccccCCC
Q 033923            5 DLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---K----ILEDNMTIAESRLP   76 (108)
Q Consensus         5 ~~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---k----~L~D~~tL~~~~i~   76 (108)
                      ..+.|+|+..... .++ +++++++||.+||++|+...+    +|   +++|||+|.|   +    +++|+.+|++|+|.
T Consensus         6 ~~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~~~~g----ip---~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~   77 (95)
T 1v6e_A            6 SGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLELVVG----SP---ASCMELELYGADDKFYSKLDQEDALLGSYPVD   77 (95)
T ss_dssp             CCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHHHTC----SC---TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred             cEEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHHHHHC----CC---HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence            3578888775443 566 999999999999999999999    88   9999999987   4    36899999999999


Q ss_pred             CCCCCCcceEEEEEecC
Q 033923           77 VVELPGTAITMHVVLRP   93 (108)
Q Consensus        77 ~~~~~~~~~tvhlv~~~   93 (108)
                      +++      ++||+-..
T Consensus        78 ~g~------~l~v~d~~   88 (95)
T 1v6e_A           78 DGC------RIHVIDHS   88 (95)
T ss_dssp             TTC------EEEEBCCS
T ss_pred             CCC------EEEEEECC
Confidence            997      99998643

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.55  E-value=5.7e-14  Score=91.12  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=76.1

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.+.|+|+..+|+.+. |.+.+++++..|++...++.+    ++   ++++||+|.|+.|.+++|+++|++.+++    
T Consensus         3 ~~~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~~~g----i~---~~~~rf~FdG~~l~~~~Tp~dl~medgD----   70 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED----   70 (91)
T ss_dssp             -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHTT----CC---STTEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            46799999999999998 999999999999999999998    77   8999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCCCCCC
Q 033923           84 AITMHVVLRPSLPDKKG  100 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~~~  100 (108)
                        +|+++.+..++..-+
T Consensus        71 --~Idv~~~q~gg~~~~   85 (91)
T 2io0_B           71 --TIDVFQQQTGGVYLE   85 (91)
T ss_dssp             --EEEEEECCCCCCCCC
T ss_pred             --EEEEEEeccCCcccc
Confidence              999999998875443

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.52  E-value=7.7e-14  Score=94.34  Aligned_cols=74  Identities=11%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             eEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---c----ccCCCCcccccCCCC
Q 033923            6 LIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---K----ILEDNMTIAESRLPV   77 (108)
Q Consensus         6 ~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---k----~L~D~~tL~~~~i~~   77 (108)
                      .+.|+|+...+. .++ +++++++||.+||++|+...|    +|   +++|||+|.|   +    +++|+.+|++|+|.+
T Consensus         6 ~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~~~~G----ip---~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~   77 (122)
T 1t0y_A            6 VYDLEITTNATDFPME-KKYPAGMSLNDLKKKLELVVG----TT---VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD   77 (122)
T ss_dssp             EEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHHHC----CC---TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred             EEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHHHHhC----CC---HHHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence            678888775543 566 999999999999999999999    88   9999999988   4    358999999999999


Q ss_pred             CCCCCcceEEEEEecC
Q 033923           78 VELPGTAITMHVVLRP   93 (108)
Q Consensus        78 ~~~~~~~~tvhlv~~~   93 (108)
                      |+      +|||+...
T Consensus        78 g~------~ihvvd~~   87 (122)
T 1t0y_A           78 GY------RIHAVDVT   87 (122)
T ss_dssp             SE------EEEEEECT
T ss_pred             CC------EEEEEeCC
Confidence            96      99999744

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.49  E-value=4.4e-14  Score=109.36  Aligned_cols=78  Identities=17%  Similarity=0.186  Sum_probs=68.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE---EcCcccCCCCcccccCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI---y~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      +++.+.|+|+. .|+.+. +++++++||++||++|++..+    +|   +++||||   |+|++|.|+.+|++|+|++|+
T Consensus         2 ~~~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~~~tg----Vp---p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~   72 (320)
T 3shq_A            2 EVKEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIFRKTQ----VR---PERQKLLNLKYKGKTAADNVKISALELKPNF   72 (320)
T ss_dssp             --CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGCEETTCBSSSSBCCTTSBTTSSCCC--C
T ss_pred             CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHC----cC---HHHeEEeecccCCcccCccccHHHcCCCCCC
Confidence            57789999996 688887 999999999999999999999    88   9999999   899999999999999999997


Q ss_pred             CCCcceEEEEEecCCC
Q 033923           80 LPGTAITMHVVLRPSL   95 (108)
Q Consensus        80 ~~~~~~tvhlv~~~~~   95 (108)
                            +|||+..+..
T Consensus        73 ------~l~L~gs~~~   82 (320)
T 3shq_A           73 ------KLMMVGSTEA   82 (320)
T ss_dssp             ------EEEEECCCC-
T ss_pred             ------EEEEEccchh
Confidence                  9999987765

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.49  E-value=1.8e-13  Score=88.81  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|.|+|+..+|+.+. |.+.+++++..|++.++++.+    ++   ++.+||+|.|+.|.++.|+++|++.+++    
T Consensus        15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~~~g----i~---~~~~rf~fdG~~l~~~~Tp~dl~medgD----   82 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED----   82 (93)
T ss_dssp             CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHHHhC----CC---ccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            46899999999999987 999999999999999999999    77   8999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCC
Q 033923           84 AITMHVVLRPSLP   96 (108)
Q Consensus        84 ~~tvhlv~~~~~~   96 (108)
                        +||++.+..++
T Consensus        83 --~Idv~~~q~GG   93 (93)
T 2d07_B           83 --TIDVFQQQTGG   93 (93)
T ss_dssp             --EEEEEECC---
T ss_pred             --EEEEEeeccCC
Confidence              99999988763

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.48  E-value=1.9e-13  Score=90.73  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=75.3

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|.|+|+..+|+.+. |.+.+++++..|++.+.++.+    ++   ++.+||+|.|+.|.++.|+++|++.+++    
T Consensus        22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~ek~g----i~---~~~~rf~FdG~~l~~~~Tp~dl~medgD----   89 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED----   89 (104)
T ss_dssp             SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHHHHT----CC---TTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred             CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHHhC----CC---cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            46899999999999998 999999999999999999998    77   8899999999999999999999999998    


Q ss_pred             ceEEEEEecCCCCCC
Q 033923           84 AITMHVVLRPSLPDK   98 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~   98 (108)
                        +||++.+..++..
T Consensus        90 --~Idv~~~q~GG~~  102 (104)
T 1wz0_A           90 --TIDVFQQQTSGPS  102 (104)
T ss_dssp             --EEEECCCCCCCSS
T ss_pred             --EEEEEEeccCCCC
Confidence              9999999888754

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.44  E-value=4.7e-13  Score=82.79  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=66.1

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+|+..+|+.+. +.+.+++++..|++...++.+    ++   ++++||+|.|+.|.+++|++++++.+|+      +
T Consensus         2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~~~g----i~---~~~~rf~fdG~~l~~~~Tp~~l~medgD------~   67 (72)
T 1wm3_A            2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED------T   67 (72)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHHHT----CC---TTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred             EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---cceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence            78999999999998 999999999999999999988    77   8999999999999999999999999998      8


Q ss_pred             EEEE
Q 033923           87 MHVV   90 (108)
Q Consensus        87 vhlv   90 (108)
                      +|+.
T Consensus        68 Idv~   71 (72)
T 1wm3_A           68 IDVF   71 (72)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.43  E-value=7.8e-13  Score=83.35  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             CCCceEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923            2 AGEDLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~   80 (108)
                      ++.+.+.|+|+..+|+ .+. +.+.+++++..|++...++.+    ++   ++++||+|.|+.|.++.|+++|++.+++ 
T Consensus         3 ~~~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~~~g----i~---~~~~rf~fdG~~l~~~~Tp~~l~medgD-   73 (79)
T 3a4r_A            3 LGSQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEEAMG----LS---GHKLSFFFDGTKLSGKELPADLGLESGD-   73 (79)
T ss_dssp             TCCCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHHHHT----CT---TCCCEEEETTEECCSCCCHHHHTCCTTC-
T ss_pred             CCCCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence            4667899999999996 887 999999999999999999998    77   8899999999999999999999999998 


Q ss_pred             CCcceEEEEE
Q 033923           81 PGTAITMHVV   90 (108)
Q Consensus        81 ~~~~~tvhlv   90 (108)
                           +||+.
T Consensus        74 -----~Idv~   78 (79)
T 3a4r_A           74 -----LIEVW   78 (79)
T ss_dssp             -----EEEEE
T ss_pred             -----EEEEe
Confidence                 88875

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.42  E-value=4.4e-13  Score=89.84  Aligned_cols=79  Identities=16%  Similarity=0.225  Sum_probs=73.8

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|.|+|+..+|+.+. |.+.+++++..|++...++.+    ++   ++++||+|.|+.|.++.|+++|++.+++    
T Consensus        24 ~~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~ek~g----i~---~~~~rfiFdG~~L~~~~Tp~dl~mEDgD----   91 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCKKQG----IS---RNSVRFLFDGTPIDETKTPEELGMEDDD----   91 (110)
T ss_dssp             CCCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHHHHT----CC---SSSCEEESSSCBCCSSSHHHHHHCSSEE----
T ss_pred             CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            35699999999999998 999999999999999999988    77   8899999999999999999999999998    


Q ss_pred             ceEEEEEecCCCC
Q 033923           84 AITMHVVLRPSLP   96 (108)
Q Consensus        84 ~~tvhlv~~~~~~   96 (108)
                        +||++....++
T Consensus        92 --~Idv~~~q~Gg  102 (110)
T 2k8h_A           92 --VIDAMVEQTGG  102 (110)
T ss_dssp             --EEEEECCCCCC
T ss_pred             --EEEEEEcccCc
Confidence              99999998875

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.41  E-value=9.7e-13  Score=87.66  Aligned_cols=79  Identities=16%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +.+.|+|+|+. +|+.+. |.+.+++++..|++...++.+    ++   ++.+||+|.|+.|.++.|.++|++.+++   
T Consensus        28 ~~~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~ek~g----i~---~~~~rF~FdG~rl~~~~Tp~dl~medgD---   95 (106)
T 2eke_C           28 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND---   95 (106)
T ss_dssp             CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCTTTTTCCTTE---
T ss_pred             CCCeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHHHhC----CC---cccEEEEECCeEcCCCCCHHHcCCCCCC---
Confidence            34679999999 999998 999999999999999999998    77   8999999999999999999999999998   


Q ss_pred             cceEEEEEecCCCC
Q 033923           83 TAITMHVVLRPSLP   96 (108)
Q Consensus        83 ~~~tvhlv~~~~~~   96 (108)
                         +|+++.+..++
T Consensus        96 ---~Idv~~~q~GG  106 (106)
T 2eke_C           96 ---IIEAHREQIGG  106 (106)
T ss_dssp             ---EEEEEECC---
T ss_pred             ---EEEEEeecccC
Confidence               99999988763

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.41  E-value=6e-13  Score=84.55  Aligned_cols=72  Identities=11%  Similarity=0.176  Sum_probs=62.3

Q ss_pred             EEEEEEeCCCCeeeeeE-eCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccC---CCCcccccCCCCCCC
Q 033923            7 IELKFRLADGADIGPSK-FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE---DNMTIAESRLPVVEL   80 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~-v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~---D~~tL~~~~i~~~~~   80 (108)
                      +.|+||+.+|+.+  +. +++++||.+||++|++..+    ++   +++|||+|++  |.|.   |+.+|++|||.+|+ 
T Consensus         1 m~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~~g----i~---~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~-   70 (86)
T 2kzr_A            1 WRVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAITG----IA---PGSQRILVGYPPECLDLSDRDITLGDLPIQSGD-   70 (86)
T ss_dssp             CCEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHHTC----CC---TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred             CEEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHHhC----CC---ccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence            4689999999653  67 9999999999999999998    77   8999999974  8874   68899999999997 


Q ss_pred             CCcceEEEEEecC
Q 033923           81 PGTAITMHVVLRP   93 (108)
Q Consensus        81 ~~~~~tvhlv~~~   93 (108)
                           ++||.-..
T Consensus        71 -----~l~v~~~~   78 (86)
T 2kzr_A           71 -----MLIVEEDQ   78 (86)
T ss_dssp             -----EEECCCCS
T ss_pred             -----EEEEEeCC
Confidence                 89887664

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.29  E-value=4.1e-11  Score=77.51  Aligned_cols=76  Identities=16%  Similarity=0.146  Sum_probs=64.1

Q ss_pred             CceEEEEEEe---CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC------cc-c-CCCCcccc
Q 033923            4 EDLIELKFRL---ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG------KI-L-EDNMTIAE   72 (108)
Q Consensus         4 ~~~i~i~~r~---~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G------k~-L-~D~~tL~~   72 (108)
                      ...+.|.|+.   .+|..++ ..+++++||++||++|+...+    ++   +..|||+|.+      .+ | +|+.+|+.
T Consensus         7 ~~~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~~~g----ip---~~~q~L~~~~~~~~~~~~~L~~d~~~L~~   78 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRLLK----VP---VSELLLSYESSKMPGREIELENDLQPLQF   78 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTTTT----CC---TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred             CccEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHHHHC----CC---hhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence            4568888886   3666776 999999999999999999999    88   8999999983      22 4 67899999


Q ss_pred             cCCCCCCCCCcceEEEEEecC
Q 033923           73 SRLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        73 ~~i~~~~~~~~~~tvhlv~~~   93 (108)
                      |++.+|+      +|||+...
T Consensus        79 y~i~~G~------~I~V~d~~   93 (97)
T 1wjn_A           79 YSVENGD------CLLVRWSG   93 (97)
T ss_dssp             GTCCTTC------EEEEECCS
T ss_pred             cCCCCCC------EEEEEecC
Confidence            9999998      99998854

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.15  E-value=3e-10  Score=76.65  Aligned_cols=78  Identities=24%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +.+.|.|+|+..+|..+. |.+.+++++..|++...++.+    ++   ++.+||+|.|+.|.++.|.+++++.+++   
T Consensus        37 ~~~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er~G----l~---~~~irFlFDG~rI~~~~TP~dL~MEDgD---  105 (115)
T 3kyd_D           37 EGEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQG----VP---MNSLRFLFEGQRIADNHTPKELGMEEED---  105 (115)
T ss_dssp             --CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---TTSEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred             CCCeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHHhC----CC---hhhEEEEECCeECCCCCCHHHcCCCCCC---
Confidence            357899999999999987 999999999999999999998    77   8999999999999999999999999999   


Q ss_pred             cceEEEEEecCC
Q 033923           83 TAITMHVVLRPS   94 (108)
Q Consensus        83 ~~~tvhlv~~~~   94 (108)
                         +|++..+..
T Consensus       106 ---~IdV~~~Q~  114 (115)
T 3kyd_D          106 ---VIEVYQEQC  114 (115)
T ss_dssp             ---EEEEEECCC
T ss_pred             ---EEEEEeecc
Confidence               899988764

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=99.07  E-value=8.8e-10  Score=80.55  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=74.3

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|+|+|+. +|..+. |.+.+++++..|++...++.|    ++   ++++||+|.|+.|.+++|.+++++.+|+    
T Consensus        27 ~~~I~LkV~~-~g~~v~-fkIk~~t~l~kL~~ay~er~G----i~---~~~~RF~FdG~rI~~~~TP~dL~MEdgD----   93 (200)
T 3pge_A           27 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND----   93 (200)
T ss_dssp             CCCEEEEEEC-SSCEEE-EEECTTSCTHHHHHHHHHHHS----SC---GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CCeEEEEEec-CCCEEE-EEEecCCHHHHHHHHHHHHhC----CC---hhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence            4568999974 899887 999999999999999999999    77   8999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCCCCCC
Q 033923           84 AITMHVVLRPSLPDKKG  100 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~~~  100 (108)
                        +|+++.+..++.+.+
T Consensus        94 --~Idv~~~q~gg~kd~  108 (200)
T 3pge_A           94 --IIEAHREQIGGGGET  108 (200)
T ss_dssp             --EEEEEECCSCCC-CC
T ss_pred             --EEEEEeccCcCcCce
Confidence              999999998886543

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.92  E-value=3.8e-09  Score=77.14  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|.|+|+ .+|..+. |.+.+++++..|++...++.+    ++   ++.+||+|.|+.|.+++|.+++++.++|    
T Consensus        55 ~e~InLKVk-~dG~eV~-FKIKrtTpL~KLmeAYcERqG----L~---~~sIRFLFDGqRI~~ddTPeDLdMEDGD----  121 (207)
T 3tix_A           55 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLTFLYDGIEIQADQTPEDLDMEDND----  121 (207)
T ss_dssp             CCEEEEEEE-CSSCEEE-EEEETTSCTHHHHHHHHHHTT----CC---GGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred             CCcEEEEEe-cCCCEEE-EEEccCChHHHHHHHHHHHhC----CC---cccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence            457899997 4899888 999999999999999999999    77   8999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCCCC
Q 033923           84 AITMHVVLRPSLPDK   98 (108)
Q Consensus        84 ~~tvhlv~~~~~~~~   98 (108)
                        +|+++++..++..
T Consensus       122 --tIDV~leQ~GG~~  134 (207)
T 3tix_A          122 --IIEAHREQIGGLP  134 (207)
T ss_dssp             --EEEECCCCCTTGG
T ss_pred             --EEEEEEeccCCCc
Confidence              9999999988753

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.59  E-value=5.6e-09  Score=77.14  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=1.1

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|.|+| ..+|..+. |.+.+++.+..|++...++.|    ++   ++.+||+|.|+.|.+++|.+++++.+||    
T Consensus        19 ~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYcERqG----Ls---~~siRFLFDGqRI~dddTPadL~MEDGD----   85 (227)
T 3v7o_A           19 ETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND----   85 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHHHHhC----CC---ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence            45788888 66888887 999999999999999999998    77   8999999999999999999999999999    


Q ss_pred             ceEEEEEecCCCCC
Q 033923           84 AITMHVVLRPSLPD   97 (108)
Q Consensus        84 ~~tvhlv~~~~~~~   97 (108)
                        +|+++.+..++.
T Consensus        86 --tIDV~leQ~GG~   97 (227)
T 3v7o_A           86 --IIEAHREQIGGL   97 (227)
T ss_dssp             ------------CC
T ss_pred             --EEEEEecccCCc
Confidence              999999888764

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.49  E-value=3.9e-07  Score=59.33  Aligned_cols=54  Identities=15%  Similarity=0.023  Sum_probs=43.6

Q ss_pred             eCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC--CCCcccccC
Q 033923           13 LADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE--DNMTIAESR   74 (108)
Q Consensus        13 ~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~--D~~tL~~~~   74 (108)
                      +..+..++ +.+.+++||..+|++|+++.|    |+   +++|||||.|+.|.  .+.....|-
T Consensus        20 ~~~a~~h~-v~I~~~etv~~~ke~V~eqTg----Ip---~~~Q~LL~eg~~l~l~p~~~a~~~p   75 (94)
T 4efo_A           20 LQQMTAHK-IYIHSYNTATIFHELVYKQTK----II---SSNQELIYEGRRLVLEPGRLAQHFP   75 (94)
T ss_dssp             TTTTEEEE-EEEETTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEEECCCTTCBGGGSC
T ss_pred             cccceEEE-EEeccchHHHHHHHHHHHHhC----CC---HHHHHHHhCCCccccCCCCccccCC
Confidence            45666666 999999999999999999999    88   89999999998664  344444553

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.47  E-value=1.2e-07  Score=59.72  Aligned_cols=66  Identities=11%  Similarity=0.134  Sum_probs=50.7

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc---c--CCCCcccccCCCCCC
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI---L--EDNMTIAESRLPVVE   79 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~---L--~D~~tL~~~~i~~~~   79 (108)
                      +.+.|+||..+|. .. +++++++|+++|+++|++..+    ++   .+.+.+.++-..   |  .++.+|+++||..|+
T Consensus         3 ~~m~lRvrs~~G~-~R-i~v~~~~t~~~L~~~I~~~~~----i~---~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd   73 (80)
T 2pjh_A            3 ESIIIRVQSPDGV-KR-ITATKRETAATFLKKVAKEFG----FQ---NNGFSVYINRNKTGEITASSSKSLHLLKIKHGD   73 (80)
T ss_dssp             CCCCCEEECSSEE-EE-CCCCSSCCHHHHHHHHHHHTC----CC---TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred             CcEEEEEECCCCC-EE-EEcCCcChHHHHHHHHHHHcC----CC---CCcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence            3477899999994 55 889999999999999999998    55   444444333222   3  477899999999998

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.47  E-value=1.4e-06  Score=56.83  Aligned_cols=69  Identities=9%  Similarity=0.094  Sum_probs=63.1

Q ss_pred             CCceEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            3 GEDLIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      +.+.|.|+++..+|. .+. |.+.++++...|.+.-.++.+    ++   ++.+||+|.|..|..+.|.+++++.+++
T Consensus        22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~~g----~~---~~~vrF~FDG~rI~~~~TP~dLdMEDgD   91 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEAMG----LS---GRKLSFFFDGTKLSGRELPADLGMESGD   91 (97)
T ss_dssp             SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHHTT----CS---SSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred             CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHHHC----CC---cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence            567899999999995 777 999999999999999999988    66   7899999999999999999999999998

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.42  E-value=2.5e-06  Score=53.95  Aligned_cols=67  Identities=19%  Similarity=0.259  Sum_probs=61.2

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEEEcCcccCCCCcccccCCCCCC
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      ..+.+-+|.....++. +.+.++.+|.+|-..-..+.+    |+   ++ .+||.|-|..|..+.++++|.+.+++
T Consensus         8 ~~~~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~~~----I~---~~~~IrllFDGdRLdp~~tp~DlemeD~D   75 (82)
T 3goe_A            8 KLITLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTEVK----IS---FHERIRLEFEGEWLDPNDQVQSTELEDED   75 (82)
T ss_dssp             CEEEEEEEESSSCCEE-EEEETTSBHHHHHHHHHHHHT----CC---CCTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred             HHHHHhhhccCCCCeE-EEecCCCCHHHHHHHHHHHcC----CC---cCceEEEEEcCcccCccCChhhhCCcCCc
Confidence            4678888998888888 999999999999988888888    77   66 99999999999999999999999998

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.35  E-value=2e-06  Score=62.60  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|.|+++. +|+.+. |.+..+++...|++...++.+    ++   ++++||+|.|+.+.+++|..+..+.+++    
T Consensus        19 ~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~~~~g----~~---~~~~~f~fdG~~i~~~~Tpk~L~~ed~d----   85 (209)
T 3uf8_A           19 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND----   85 (209)
T ss_dssp             CSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGCEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHHHhhC----CC---hheEEEEECCEeccCCCChHHhhhcccc----
Confidence            5678999986 777777 999999999999999999999    77   9999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCCC
Q 033923           84 AITMHVVLRPSLPD   97 (108)
Q Consensus        84 ~~tvhlv~~~~~~~   97 (108)
                        ++.+.....++.
T Consensus        86 --~I~~~~eq~Gg~   97 (209)
T 3uf8_A           86 --IIEAHREQIGGS   97 (209)
T ss_dssp             --EEEEECSCTTCC
T ss_pred             --cchhhccccccc
Confidence              888888877743

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.26  E-value=9.6e-08  Score=75.09  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=0.5

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +.+.|.|+|+. +|..+. |.+.++++...|++...++.+    ++   ++.+|++|.|+.|.+++|.+++++.+|+   
T Consensus        18 ~~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~~r~G----~~---~~~~rFlFdG~rI~~~~TP~~L~MEDgD---   85 (360)
T 3ix6_A           18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND---   85 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHHHHhC----CC---cceEEEEECCeECCCCCChHHcCCCccc---
Confidence            45678888886 677777 999999999999999999988    67   8999999999999999999999999999   


Q ss_pred             cceEEEEEecCCCCC
Q 033923           83 TAITMHVVLRPSLPD   97 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~   97 (108)
                         +|++..+..++.
T Consensus        86 ---~Idv~~~Q~g~~   97 (360)
T 3ix6_A           86 ---IIEAHREQIGGM   97 (360)
T ss_dssp             --------------C
T ss_pred             ---hhhhhhccCchH
Confidence               899998887764

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=98.13  E-value=2e-05  Score=49.34  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCccc---CCCCcccccCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL---EDNMTIAESRLPV   77 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L---~D~~tL~~~~i~~   77 (108)
                      .++...|.||+.+|..+. -.|..++||.+|.+-|.. .+    ..   ....+|+  |-.|.|   +.+.+|.++|+.+
T Consensus         4 ~~~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~-~~----~~---~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p   74 (84)
T 3qx1_A            4 MEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVAS-KG----FP---WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP   74 (84)
T ss_dssp             CCCEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHH-TT----CC---TTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred             CCCeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHH-cC----CC---CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence            467889999999999887 899999999999999987 34    33   6778887  457877   3468999999986


Q ss_pred             CC
Q 033923           78 VE   79 (108)
Q Consensus        78 ~~   79 (108)
                      ..
T Consensus        75 ~a   76 (84)
T 3qx1_A           75 QE   76 (84)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.10  E-value=3.2e-05  Score=50.34  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=64.8

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      .+.|.|+|+ .+|..+. |.+..++....|.+...++.|    +.   ++.+|++|.|..+.++.|-++.++.+++    
T Consensus        19 ~~~IniKV~-~~g~ev~-FkIK~tt~l~KL~~aYc~r~g----v~---~~sirFlfDG~rI~~~~TP~~L~meD~D----   85 (95)
T 2l76_A           19 PRLFPLKIR-CRADLVR-LPLRMSEPLQSVVDHMATHLG----VS---PSRILLLFGETELSPTATPRTLKLGVAD----   85 (95)
T ss_dssp             CCCEEEEEE-CSSSEEE-EEECSSSCTHHHHHHHHHHHT----SC---GGGEEEEETTEECCTTSCHHHHTCCSSC----
T ss_pred             CCeEEEEEE-cCCcEEE-EEEecCChHHHHHHHHHhhcC----CC---hhhEEEEECCcCCCCCCCHhHcCCCCCC----
Confidence            455999999 4788887 999999999999999999988    66   9999999999999999999999999998    


Q ss_pred             ceEEEEEec
Q 033923           84 AITMHVVLR   92 (108)
Q Consensus        84 ~~tvhlv~~   92 (108)
                        ++-+++-
T Consensus        86 --iID~~~~   92 (95)
T 2l76_A           86 --IIDCVVL   92 (95)
T ss_dssp             --EEEEEEC
T ss_pred             --EEEEEEe
Confidence              5655543

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=98.01  E-value=7.2e-07  Score=69.69  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      .++.|.|+|+. +|..+. |.+..+++...|++...++.+    ++   +.++||+|.|+.|.+++|.+++++.+++   
T Consensus        27 ~~~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~~~~g----~~---~~~~~f~f~G~~i~~~~Tp~~l~med~d---   94 (389)
T 4da1_A           27 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQAPEDLDMEDND---   94 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcEEEEEec-CCcEEE-EEECCCChHHHHHHHHHHHhC----CC---cceEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence            34667888876 777776 999999999999999999998    77   8999999999999999999999999998   


Q ss_pred             cceEEEEEecCCCCC
Q 033923           83 TAITMHVVLRPSLPD   97 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~   97 (108)
                         +|++.....++.
T Consensus        95 ---~i~~~~~q~gg~  106 (389)
T 4da1_A           95 ---IIEAHREQIGGE  106 (389)
T ss_dssp             ---------------
T ss_pred             ---Eeeeeecccccc
Confidence               888888887664

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.97  E-value=4.2e-05  Score=48.37  Aligned_cols=73  Identities=10%  Similarity=0.203  Sum_probs=61.8

Q ss_pred             CceEEEEEEe--CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            4 EDLIELKFRL--ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         4 ~~~i~i~~r~--~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      +..+.|++.+  -.|+.+. ++++...||.+|++.+++.++-+  .++.+-.++|..-.|.+|.+++.|++|++.+|+
T Consensus         2 ~~yI~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD   76 (81)
T 2bps_A            2 GSYIDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNGD   76 (81)
T ss_dssp             CCEEEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred             CcEEEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence            3567788887  5788888 99999999999999999999843  333332589999999999999999999999998

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.89  E-value=0.00022  Score=46.90  Aligned_cols=77  Identities=14%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC--C-CCcccccCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE--D-NMTIAESRLPV   77 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~--D-~~tL~~~~i~~   77 (108)
                      .+....|.||+.+|..+. -.|..++||.+|.+-|....+    ..   .....|+  |-.|.|.  | +.+|.++++.+
T Consensus        10 ~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~----~~---~~~f~L~t~fPrk~l~~~d~~~TL~elgL~p   81 (109)
T 2dzk_A           10 RSTIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTVG----NT---YGNFSLATMFPRREFTREDYKRRLLDLELAP   81 (109)
T ss_dssp             CSCCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHHT----TS---SCSCEEECSSSCCBCCTTTTTSBTGGGTCSS
T ss_pred             CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhccC----CC---CCceEEEcCCCCcCCcccccCCCHHHCCCCC
Confidence            356789999999999887 999999999999999998754    23   4556665  4577775  3 68999999986


Q ss_pred             CCCCCcceEEEEEecC
Q 033923           78 VELPGTAITMHVVLRP   93 (108)
Q Consensus        78 ~~~~~~~~tvhlv~~~   93 (108)
                      ..      ++++....
T Consensus        82 sa------~L~v~~~~   91 (109)
T 2dzk_A           82 SA------SVVLLPAG   91 (109)
T ss_dssp             EE------EEEEECCS
T ss_pred             ce------EEEEEECc
Confidence            53      56555443

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.79  E-value=0.00015  Score=48.88  Aligned_cols=68  Identities=19%  Similarity=0.249  Sum_probs=55.7

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCccc--CC-CCcccccCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKIL--ED-NMTIAESRLPV   77 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L--~D-~~tL~~~~i~~   77 (108)
                      .+....|.||+.+|..+. -.|..++||.+|.+-|... +    ..   .....|+  |-.|.|  .| +.+|.++++.+
T Consensus        40 ~~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~-~----~~---~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p  110 (124)
T 1wj4_A           40 NGPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK-G----YP---NERFELLTNFPRRKLSHLDYDITLQEAGLCP  110 (124)
T ss_dssp             SSCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-H----CC---TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred             CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-C----CC---CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence            467899999999999887 8999999999999999876 4    44   5667776  557878  34 79999999986


Q ss_pred             CC
Q 033923           78 VE   79 (108)
Q Consensus        78 ~~   79 (108)
                      ..
T Consensus       111 sa  112 (124)
T 1wj4_A          111 QE  112 (124)
T ss_dssp             SB
T ss_pred             ce
Confidence            53

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=97.64  E-value=0.00017  Score=48.71  Aligned_cols=69  Identities=26%  Similarity=0.410  Sum_probs=55.6

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccCC-CCcccccCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILED-NMTIAESRLPVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~D-~~tL~~~~i~~~   78 (108)
                      .+....|.||+.+|..+. -.|..++||.+|.+-|....+.   ..   .....|+  |-.|.|.| +.||.++++.+.
T Consensus        49 ~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~---~~---~~~f~L~t~fPrk~l~d~~~TL~eagL~ps  120 (127)
T 1s3s_G           49 AEPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA---MA---ATSFVLMTTFPNKELADENQTLKEANLLNA  120 (127)
T ss_dssp             TSCCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSG---GG---TSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred             CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcC---CC---CCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence            456789999999999887 9999999999999999987542   23   4667776  45778865 699999999864

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.49  E-value=9.5e-05  Score=50.43  Aligned_cols=67  Identities=21%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCC----------CC------------------------C
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPK----------TV------------------------N   53 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~----------~~------------------------~   53 (108)
                      .|+|++++|...+ +.|+.+.+|++++..|....|    +++.          .+                        .
T Consensus        13 ~LkV~llDg~~kt-l~VD~S~~V~~lv~~Ic~kig----I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   87 (128)
T 2kc2_A           13 PLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARIG----ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKL   87 (128)
T ss_dssp             EEEEECTTSCEEE-EEEEECSSHHHHHHHHHHHHT----CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSS
T ss_pred             cEEEEcCCCCEEE-EEeCCCcCHHHHHHHHHHHhC----CCCcccccccccccccccccCchhhccccccccchhHHHHH
Confidence            5899999999888 999999999999999999887    5421          00                        1


Q ss_pred             ceEEEE--cCcccCCCCcccccCCCCCC
Q 033923           54 NVQLIH--AGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus        54 ~qRLIy--~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .+||-.  .+..|+++.+|.++||.+++
T Consensus        88 k~kL~~dd~~~WLD~srtL~EQGI~e~~  115 (128)
T 2kc2_A           88 KQKLHTDDELNWLDHGRTLREQGVEEHE  115 (128)
T ss_dssp             CCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred             HHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence            344421  24688889999999999887

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.44  E-value=0.0018  Score=42.35  Aligned_cols=67  Identities=13%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC--CCCcccccCCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE--DNMTIAESRLPVVE   79 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~--D~~tL~~~~i~~~~   79 (108)
                      +..+.|.||+.+|+.+. -.|..++||.+|.+-|... +    ..   +...+|+  |-.|.|.  .+.||+++|+.+..
T Consensus        21 ~~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~-~----~~---~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a   91 (109)
T 2cr5_A           21 EEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV-G----YH---KSLYRLSTSFPRRALEVEGGSSLEDIGITVDT   91 (109)
T ss_dssp             SSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH-T----CC---TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCE
T ss_pred             CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-C----CC---CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCe
Confidence            46789999999999887 8999999999999999865 3    23   5677776  4477775  36899999999763

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=96.99  E-value=0.0045  Score=47.62  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE------cCcccCCCCcccccCCCCCC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH------AGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy------~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .+.|+|++. +.+.+ +.|+|++||.++-.+|.++.+..   .+.++++--|.-      .|+.|+++.+|..|++.+++
T Consensus         3 ~~~~~~~~~-~~~~~-~~f~~~~~v~~~~~~i~e~~~~~---~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~   77 (371)
T 3ivf_A            3 ALSLKISIG-NVVKT-MQFEPSTMVYDACRMIRERIPEA---LAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD   77 (371)
T ss_dssp             CEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHTTCGGG---GSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred             cEEEEEEec-ceeEE-EEECCCCCHHHHHHHHHHhcccc---cCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence            578899988 55555 99999999999999999888741   112255555554      46789889999999999886

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=96.83  E-value=0.012  Score=39.16  Aligned_cols=81  Identities=21%  Similarity=0.179  Sum_probs=51.3

Q ss_pred             CceEEEEEEeCC--CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE----cCcccCCC--------
Q 033923            4 EDLIELKFRLAD--GADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH----AGKILEDN--------   67 (108)
Q Consensus         4 ~~~i~i~~r~~~--g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy----~Gk~L~D~--------   67 (108)
                      -.++.|.+....  +..+. +.+-..+||.++|++|....-....+  .|. ++++.|=+    .|++|.|.        
T Consensus         9 ~~~ltl~v~~~~~~~~~i~-vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~-~~~~dLEwr~g~~~~iL~D~D~ts~~~~   86 (111)
T 4e71_A            9 YAPLTVSVIVQDEGVDAIP-VKVLNCDTISQVKEKIIDQVYRGQPCSCWPR-PDSVVLEWRPGSTAQILSDLDLTSQREG   86 (111)
T ss_dssp             CCEEEEEEEETTSCCCCEE-EEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC--
T ss_pred             eEEEEEEEEecCCCCCcee-eeeeccCcHHHHHHHHHHHHHcCCccccCCC-CCceeeEEecCCCCccccccCccceecC
Confidence            455667766543  33454 77889999999999998754222111  243 77888876    24577663        


Q ss_pred             -----CcccccCCCCCCCCCcceEEEEEec
Q 033923           68 -----MTIAESRLPVVELPGTAITMHVVLR   92 (108)
Q Consensus        68 -----~tL~~~~i~~~~~~~~~~tvhlv~~   92 (108)
                           .||+.|++++|.      ++-++.+
T Consensus        87 ~wkrLNTL~HY~V~dga------tl~l~~~  110 (111)
T 4e71_A           87 RWKRVNTLMHYNVRDGA------TLILSKV  110 (111)
T ss_dssp             -CCCCCBHHHHTCCTTC------EEEEEEC
T ss_pred             cceEecchhhcCCCCCC------EEEEEeC
Confidence                 267789999996      7766543

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.68  E-value=0.013  Score=37.49  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      +.|.|...+|.... +.+.|++++.++-+.--++.+    +.   +++-.|-|++|.|+=+.++.-.||+++.      .
T Consensus        10 m~v~Vl~~n~rr~~-VKvtp~t~L~~VL~eaC~K~g----l~---~~~~~Lkh~~k~lDLSlpfRlsgLpnnA------k   75 (90)
T 2al3_A           10 SAVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRRQD----FN---PSEYDLKFQRTVLDLSLQWRFANLPNNA------K   75 (90)
T ss_dssp             CCEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHHTT----CC---GGGCEEEETTEEESSSCBHHHHCCCSSC------E
T ss_pred             cEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHHhC----CC---hhhCeEEeCCEeccccceeEecCCCCCC------E
Confidence            48888889999888 999999999998888888888    55   7788999999999888889889999996      7


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +-|+......
T Consensus        76 LELv~~s~s~   85 (90)
T 2al3_A           76 LEMVPVSRSR   85 (90)
T ss_dssp             EEEECSSSCC
T ss_pred             EEEEEccCCC
Confidence            8787765443

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=96.52  E-value=0.023  Score=39.06  Aligned_cols=83  Identities=24%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             CceEEEEEEeCCC------CeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE----cCc-ccCCC---
Q 033923            4 EDLIELKFRLADG------ADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH----AGK-ILEDN---   67 (108)
Q Consensus         4 ~~~i~i~~r~~~g------~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy----~Gk-~L~D~---   67 (108)
                      -.++.|.+-...|      ..+. +.|-..+||.++|++|....-.+..+  .|. ++++-|=+    +|+ +|.|.   
T Consensus        22 y~~ltl~v~~~~~~~~~~~~~i~-VkVLdCDTItQvKeKiLDavYk~~PySqRP~-~~d~dLEwr~g~~g~liL~D~D~t   99 (138)
T 2r2o_A           22 YRPLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPD-PRTLDVEWRSGVAGHLILSDEDVT   99 (138)
T ss_dssp             CCEEEEEEEEC-------CCCEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGCCC-GGGEEEEEECSSSCEEEECSSSTT
T ss_pred             eEEEEEEEEccCCcccccCCcee-EEEeccccHHHHHHHHHHHHHcCCccccCCC-ccceeEEEecCCcCceEeeccCCc
Confidence            3456666655432      3454 88889999999999999764333211  244 77777765    344 47664   


Q ss_pred             ----------CcccccCCCCCCCCCcceEEEEEecCC
Q 033923           68 ----------MTIAESRLPVVELPGTAITMHVVLRPS   94 (108)
Q Consensus        68 ----------~tL~~~~i~~~~~~~~~~tvhlv~~~~   94 (108)
                                .||+.|++++|.      +|-|+.+..
T Consensus       100 S~~~~~wkrLNTL~HY~V~Dga------~l~l~~~~~  130 (138)
T 2r2o_A          100 SEVQGLWRRLNTLQHYKVPDGA------TVALVPCLT  130 (138)
T ss_dssp             CCEETTEEECCBHHHHTCCTTC------EEEEEEC--
T ss_pred             ccccCCceeecchhccCCCCCC------EEEEEECCC
Confidence                      288899999996      777776654

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.83  E-value=0.11  Score=35.17  Aligned_cols=70  Identities=26%  Similarity=0.326  Sum_probs=47.4

Q ss_pred             CCeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE-cC---c-ccCCC-------------CcccccCC
Q 033923           16 GADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH-AG---K-ILEDN-------------MTIAESRL   75 (108)
Q Consensus        16 g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy-~G---k-~L~D~-------------~tL~~~~i   75 (108)
                      +..+. +.+-..+||.++|++|....-....+  .|. ++++.|=+ .|   + +|.|.             .||+.|++
T Consensus        16 ~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~-~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V   93 (127)
T 3h6n_A           16 MDSLS-VRAMDTDTLTQVKEKILEAFCKNVPYSQWPR-AEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI   93 (127)
T ss_dssp             CCCEE-EEEETTSBHHHHHHHHHHHHSTTSCGGGSCC-GGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred             CCcee-eeeeccCchhhhhHHHHHHHhccCCcccCCC-CcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence            34454 78889999999999998754322112  244 78888877 34   3 47662             26777999


Q ss_pred             CCCCCCCcceEEEEEecC
Q 033923           76 PVVELPGTAITMHVVLRP   93 (108)
Q Consensus        76 ~~~~~~~~~~tvhlv~~~   93 (108)
                      ++|.      ++-|+.+.
T Consensus        94 ~dga------tv~l~~~~  105 (127)
T 3h6n_A           94 PEGA------SLAMSLID  105 (127)
T ss_dssp             CTTC------EEEEEECC
T ss_pred             CCCC------EEEEEEcc
Confidence            9986      77776543

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=95.23  E-value=0.17  Score=33.71  Aligned_cols=82  Identities=24%  Similarity=0.317  Sum_probs=51.7

Q ss_pred             CceEEEEEEeCCC---CeeeeeEeCCcchHHHHHHHHHhhCCCCCcC--CCCCCCceEEEE-cCc----ccCCC------
Q 033923            4 EDLIELKFRLADG---ADIGPSKFSPTTTVASLKEKIISRWPKEKEN--GPKTVNNVQLIH-AGK----ILEDN------   67 (108)
Q Consensus         4 ~~~i~i~~r~~~g---~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i--~p~~~~~qRLIy-~Gk----~L~D~------   67 (108)
                      -.++.|.+....|   ..+. +.+-..+||.++|++|....-....+  .|. ++++.|=+ .|+    +|.|.      
T Consensus        11 ~~~ltl~v~~~~~~~~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~-~~~~dLEwr~g~~~~~iL~D~D~ts~~   88 (117)
T 4e74_A           11 YKTLVLSCVSPDNANSPEVP-VKILNCDTITQVKEKILDAIFKNVPCSHRPK-AADMDLEWRQGSGARMILQDEDITTKI   88 (117)
T ss_dssp             CCEEEEEECCC----CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEECTTSCEEEECSSSTTCCC
T ss_pred             cEEEEEEEEccCCCCCCceE-eeeecCCchHHHHHHHHHHHhcCCCcccCCC-CCceeEEEecCCCCceEeecCCCccEe
Confidence            3455666654432   2344 77778999999999998754322111  244 78888866 343    46552      


Q ss_pred             -------CcccccCCCCCCCCCcceEEEEEecC
Q 033923           68 -------MTIAESRLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        68 -------~tL~~~~i~~~~~~~~~~tvhlv~~~   93 (108)
                             .||+.|++++|.      +|-|+.+.
T Consensus        89 ~~~wkrLNTL~HY~V~dga------tl~l~~~~  115 (117)
T 4e74_A           89 ENDWKRLNTLAHYQVPDGS------VVALVSKQ  115 (117)
T ss_dssp             ---CCCCCBHHHHTCCTTC------EEEEEECC
T ss_pred             cCcceEeccccccCCCCCC------EEEEEeCC
Confidence                   257779999986      77776654

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=93.90  E-value=0.74  Score=33.02  Aligned_cols=67  Identities=19%  Similarity=0.237  Sum_probs=46.9

Q ss_pred             eEEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEE--Ec-Cc--ccCC-CCcccccCCCC
Q 033923            6 LIELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLI--HA-GK--ILED-NMTIAESRLPV   77 (108)
Q Consensus         6 ~i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLI--y~-Gk--~L~D-~~tL~~~~i~~   77 (108)
                      .+.+++...... ....+.++..+||.+|++++....+    ++   .+ ..||-  |. ++  .|.| +.+|.+++|.+
T Consensus       127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~----i~---~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~  199 (217)
T 4a3p_A          127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFS----IP---DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQ  199 (217)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTT----CC---TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCT
T ss_pred             ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhC----CC---CCCceEEEEecCCCCeeecCCCCCCHHHhCCCC
Confidence            344555443322 2223788999999999999999998    76   54 68883  42 22  5655 57999999998


Q ss_pred             CC
Q 033923           78 VE   79 (108)
Q Consensus        78 ~~   79 (108)
                      +.
T Consensus       200 ~Q  201 (217)
T 4a3p_A          200 GQ  201 (217)
T ss_dssp             TC
T ss_pred             CC
Confidence            85

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=93.07  E-value=0.62  Score=38.99  Aligned_cols=82  Identities=23%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             CceEEEEEEeCCC------CeeeeeEeCCcchHHHHHHHHHhhCCCCCc--CCCCCCCceEEEE-c---Cc-ccCCCC--
Q 033923            4 EDLIELKFRLADG------ADIGPSKFSPTTTVASLKEKIISRWPKEKE--NGPKTVNNVQLIH-A---GK-ILEDNM--   68 (108)
Q Consensus         4 ~~~i~i~~r~~~g------~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~--i~p~~~~~qRLIy-~---Gk-~L~D~~--   68 (108)
                      ..++.|.+....|      ..+. +.|-..|||.++|++|...--....  ..|. ++++.|=+ .   |+ +|.|..  
T Consensus       255 ~~~ltL~v~~~~~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavYk~~pyS~rP~-~~~~dLEwr~g~~g~~iL~D~D~t  332 (644)
T 3hm6_X          255 YRPLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPD-PRTLDVEWRSGVAGHLILSDEDVT  332 (644)
T ss_dssp             CCEEEEEEECC-------CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEECSSSCEEEECSSSTT
T ss_pred             ceeEEEEEeecCccccCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCC-CCCcceEEeeCCCCceeecccCcc
Confidence            3456667655433      2343 7888999999999999854221111  1243 67887766 2   34 466643  


Q ss_pred             -----------cccccCCCCCCCCCcceEEEEEecC
Q 033923           69 -----------TIAESRLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        69 -----------tL~~~~i~~~~~~~~~~tvhlv~~~   93 (108)
                                 ||+.|++++|.      +|-|+.+.
T Consensus       333 s~~~~~wkrLNTL~HY~V~dga------~v~L~p~~  362 (644)
T 3hm6_X          333 SEVQGLWRRLNTLQHYKVPDGA------TVALVPCL  362 (644)
T ss_dssp             CCEETTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred             ceecCcceeecchhhcCCCCCc------EEEEEecc
Confidence                       78889999996      77666554

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=93.01  E-value=0.78  Score=30.91  Aligned_cols=58  Identities=24%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             eeeeeEeCCcchHHHHHHHHHhhC----CCCCcCCCCCCCceEEEE-cCc---ccCCC--------------CcccccCC
Q 033923           18 DIGPSKFSPTTTVASLKEKIISRW----PKEKENGPKTVNNVQLIH-AGK---ILEDN--------------MTIAESRL   75 (108)
Q Consensus        18 ~~~~l~v~~~~TV~~LK~~I~~~~----~~~~~i~p~~~~~qRLIy-~Gk---~L~D~--------------~tL~~~~i   75 (108)
                      .+. +.+-..+||.++|++|....    +..  ..+. ++++.|=+ .|+   +|.|.              .||+.|++
T Consensus        40 ~v~-VkVLdCDTItQVKEKILdavYk~k~~p--ys~r-~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V  115 (126)
T 3kuz_A           40 NIS-VNVLDCDTIGQAKEKIFQAFLSKNGSP--YGLQ-LNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI  115 (126)
T ss_dssp             EEE-EEEETTCBHHHHHHHHHHHHHHHHSSC--CSSC-GGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred             ceE-eeeecCCcHHHHHHHHHHHHhccCCCc--CCCC-ccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence            344 77889999999999997542    311  2232 67777765 333   44442              24566889


Q ss_pred             CCCC
Q 033923           76 PVVE   79 (108)
Q Consensus        76 ~~~~   79 (108)
                      ++|.
T Consensus       116 ~Dga  119 (126)
T 3kuz_A          116 SNGS  119 (126)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            9886

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=92.77  E-value=0.36  Score=30.25  Aligned_cols=47  Identities=11%  Similarity=0.137  Sum_probs=40.1

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK   62 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk   62 (108)
                      .+.|+|...  .++. +++++..+..+|+++|.++.+    ++   ++..+|.|.-.
T Consensus         5 ~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL~----l~---~~~~~LsYk~~   51 (83)
T 1oey_A            5 AYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKLE----LR---LEHTKLSYRPR   51 (83)
T ss_dssp             CEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHTT----CC---GGGCCEEECCT
T ss_pred             cEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHhC----CC---cceeEEEeeCC
Confidence            466777766  6787 999999999999999999998    67   78899999765

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=92.66  E-value=1.6  Score=31.59  Aligned_cols=67  Identities=19%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             eEEEEEEeCCCCe-eeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCC-ceEEEE-c----CcccCC-CCcccccCCCC
Q 033923            6 LIELKFRLADGAD-IGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVN-NVQLIH-A----GKILED-NMTIAESRLPV   77 (108)
Q Consensus         6 ~i~i~~r~~~g~~-~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~-~qRLIy-~----Gk~L~D-~~tL~~~~i~~   77 (108)
                      .+.++|....... ...+.++..+||.+|++++....+    ++   .+ ..||-. .    ...|.| +.+|.+++|..
T Consensus       139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~----i~---~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~  211 (231)
T 3jyu_A          139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFN----IP---AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQ  211 (231)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTT----CC---TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCT
T ss_pred             cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhC----CC---CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCC
Confidence            3445554433221 112678999999999999999998    76   55 799853 2    235665 58999999998


Q ss_pred             CC
Q 033923           78 VE   79 (108)
Q Consensus        78 ~~   79 (108)
                      +.
T Consensus       212 ~Q  213 (231)
T 3jyu_A          212 GQ  213 (231)
T ss_dssp             TE
T ss_pred             CC
Confidence            74

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=91.68  E-value=1.5  Score=36.61  Aligned_cols=82  Identities=17%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             CceEEEEEEeCCC---CeeeeeEeCCcchHHHHHHHHHhhCCCCCc--CCCCCCCceEEEE-c---Cc-ccCCC------
Q 033923            4 EDLIELKFRLADG---ADIGPSKFSPTTTVASLKEKIISRWPKEKE--NGPKTVNNVQLIH-A---GK-ILEDN------   67 (108)
Q Consensus         4 ~~~i~i~~r~~~g---~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~--i~p~~~~~qRLIy-~---Gk-~L~D~------   67 (108)
                      ...+.|.+...+|   ..+. +.|-..|||.++|++|-...-....  ..|. ++++.|=+ .   |+ +|.|.      
T Consensus       231 ~~~ltL~v~~~~~~~~~~i~-vkVLdCDTItQVKeKiLdavYk~~pyS~rP~-~~~~dLEwr~g~~g~~iL~D~D~ts~~  308 (627)
T 3ig3_A          231 YKTLTLHCVCPESEGSAQVP-VKVLNCDSITQAKDKLLDTVYKGIPYSQRPK-AEDMDLEWRQGRMARIILQDEDITTKI  308 (627)
T ss_dssp             CCEEEEEEECTTTC--CEEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEESCSSCEEEECSSSTTCCE
T ss_pred             ceeEEEEEeccCCCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCC-CCccceeEeeCCCCceeeccCCccccc
Confidence            3456666655443   3444 7888999999999999865322111  1244 78888865 2   34 45552      


Q ss_pred             -------CcccccCCCCCCCCCcceEEEEEecC
Q 033923           68 -------MTIAESRLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        68 -------~tL~~~~i~~~~~~~~~~tvhlv~~~   93 (108)
                             .||+.|++++|.      +|-|+.+.
T Consensus       309 ~~~wkrLNTL~HY~V~Dga------~v~L~p~~  335 (627)
T 3ig3_A          309 ECDWKRVNSLAHYQVTDGS------LVALVPKQ  335 (627)
T ss_dssp             ETTEEECCBTTTTTCCTTC------EEEEEEC-
T ss_pred             cCceeEecchhhcCCCCCc------eEEEEecc
Confidence                   367889999996      77777665

>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*

Probab=90.37  E-value=2.2  Score=26.77  Aligned_cols=71  Identities=15%  Similarity=0.167  Sum_probs=52.4

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc--cCCCCcccccCCCCCC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI--LEDNMTIAESRLPVVE   79 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~--L~D~~tL~~~~i~~~~   79 (108)
                      +-|..++-...-..-+-++..+|+.++-++++...-+. ...|. +.-+|..++|+-  |.++.++++.||.+-+
T Consensus         4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGr-rv~p~-pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme   76 (84)
T 3ge3_C            4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNR-RVAPR-EGVMRVRKHRSTELFPRDMTIAESGLNPTE   76 (84)
T ss_dssp             EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTT-TBCCC-SSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred             cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcce-eeCCC-CCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence            34444554443333478999999999999999654221 13455 669999999998  9999999999999876

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.86  E-value=0.35  Score=30.79  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE---EcCcccCCCCcccccCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPV   77 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI---y~Gk~L~D~~tL~~~~i~~   77 (108)
                      ..|.++.+-|.....+..- ++|+|..+..+|--.|-+++.    +.   ++..-|.   -.+..|+=+.+|.+|||++
T Consensus         6 ~PE~TvRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~Kce----fd---p~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A            6 SGEKTVRVVINFKKTQKTI-VRVSPHASLQELAPIICSKCE----FD---PLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             CCCSCEEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHHTT----CC---TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             CCccEEEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhccc----CC---hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            3578999999997665544 999999999999999999988    55   4444443   3455777789999999984

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=88.87  E-value=3.6  Score=29.93  Aligned_cols=76  Identities=14%  Similarity=0.130  Sum_probs=54.3

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc---Cc--ccCCCCcccccCCCCCCC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA---GK--ILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~---Gk--~L~D~~tL~~~~i~~~~~   80 (108)
                      .+.++|.++|| ++. +.+++++|+.+|=+.|....+    +.  +.+..=|.|.   |.  .|+.++.+.+.++..+  
T Consensus         1 ~i~~~V~l~d~-~~~-~~v~~~tt~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~--   70 (294)
T 1ef1_A            1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKTIG----LR--EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE--   70 (294)
T ss_dssp             CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC--
T ss_pred             CEEEEEEECCc-eEE-EEECCCCcHHHHHHHHHHHcC----CC--CcceeEEEEECCCCceeecccccCHHhhccCCC--
Confidence            47899999999 787 999999999999999999888    43  1455666553   32  4666777777654433  


Q ss_pred             CCcceEEEEEecC
Q 033923           81 PGTAITMHVVLRP   93 (108)
Q Consensus        81 ~~~~~tvhlv~~~   93 (108)
                        .+..+++-++-
T Consensus        71 --~~~~l~fr~kf   81 (294)
T 1ef1_A           71 --SPLLFKFRAKF   81 (294)
T ss_dssp             --SSEEEEEEESS
T ss_pred             --CCEEEEEEEEE
Confidence              24566666653

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=88.75  E-value=3.7  Score=30.26  Aligned_cols=78  Identities=9%  Similarity=0.039  Sum_probs=56.3

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--cCc--ccCCCCcccccCCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGK--ILEDNMTIAESRLPVVE   79 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~Gk--~L~D~~tL~~~~i~~~~   79 (108)
                      ...+.++|.+.+| ++. +.+++++|+.+|=+.|....+    +.  +.+..=|.|  .|.  .|+.+..|.+.....+.
T Consensus        20 ~~~~~~~V~lldg-~~~-~~v~~~t~~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~   91 (314)
T 1h4r_A           20 PKTFTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRTLG----LR--ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE   91 (314)
T ss_dssp             -CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEETTEEEECCTTSBGGGSSCCCSS
T ss_pred             CCeeEEEEEeCCc-eEE-EEeCCCCcHHHHHHHHHHHhC----CC--CCccceEEEEeCCcCeeCCCccCHHHcCCCCCC
Confidence            4578899999999 788 999999999999999999888    43  155666655  332  57777888876544332


Q ss_pred             CCCcceEEEEEecC
Q 033923           80 LPGTAITMHVVLRP   93 (108)
Q Consensus        80 ~~~~~~tvhlv~~~   93 (108)
                          +..+++-++-
T Consensus        92 ----~~~l~fr~kf  101 (314)
T 1h4r_A           92 ----PVTFHFLAKF  101 (314)
T ss_dssp             ----SEEEEEEESS
T ss_pred             ----CEEEEEEEEE
Confidence                4466666553

>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}

Probab=88.02  E-value=1  Score=29.50  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhh
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR   40 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~   40 (108)
                      ..+.|.+-+.+|--+. +++..+.|+.++|+.++++
T Consensus        18 ~~v~v~~LlPnGi~i~-l~~~~~~tl~eiK~~lw~e   52 (108)
T 2v1y_A           18 PRILVECLLPNGMIVT-LECLREATLITIKHELFKE   52 (108)
T ss_dssp             SEEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred             CcEEEEEEcCcEEEEE-EEeeccccHHHHHHHHHHH
Confidence            6688999999999887 9999999999999999986

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=86.40  E-value=5.3  Score=32.65  Aligned_cols=79  Identities=9%  Similarity=0.054  Sum_probs=56.8

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC-----cccCCCCcccccCCCCC
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG-----KILEDNMTIAESRLPVV   78 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G-----k~L~D~~tL~~~~i~~~   78 (108)
                      ...+.++|.+++| ++. |.+++++|+.+|=+.|....+    +.  +...+=|.|..     ..|+.+.+|.+.++..+
T Consensus         2 ~k~i~v~V~llDg-t~e-~~vd~~tt~~ell~~V~~~Lg----L~--e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~   73 (575)
T 2i1j_A            2 PKSMNVRVTTMDA-ELE-FAIQQTTTGKQLFDQVVKTIG----LR--EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE   73 (575)
T ss_dssp             -CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC
T ss_pred             CceEEEEEEeCCC-eEE-EEECCCCCHHHHHHHHHHHcC----CC--CccceeEEEEecCcchhHhhccccHHHhcccCC
Confidence            3578999999999 777 999999999999999999888    43  25566666642     35666777777655433


Q ss_pred             CCCCcceEEEEEecCC
Q 033923           79 ELPGTAITMHVVLRPS   94 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~   94 (108)
                          .+..+++-++--
T Consensus        74 ----~~~~L~FRvkfy   85 (575)
T 2i1j_A           74 ----NPLQFKFRAKFY   85 (575)
T ss_dssp             ----SSEEEEEEESSC
T ss_pred             ----CCeEEEEEEEEc
Confidence                245677766643

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=85.75  E-value=4.2  Score=24.52  Aligned_cols=56  Identities=11%  Similarity=0.191  Sum_probs=35.9

Q ss_pred             CeeeeeEeCCcchHHHHHHHHHhhCCCCCc---CCC-CC-CCceEEEEcCcccCCCCcccccCCCCCC
Q 033923           17 ADIGPSKFSPTTTVASLKEKIISRWPKEKE---NGP-KT-VNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus        17 ~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~---i~p-~~-~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .... ++++...||++|.+.+...++. +.   +.. .. ....++.-+|+....     +.-+++||
T Consensus        18 ~~~~-~~~~~~~Tv~~ll~~L~~~~p~-~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gD   78 (89)
T 3po0_A           18 RTVR-VDVDGDATVGDALDALVGAHPA-LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGD   78 (89)
T ss_dssp             SEEE-EECCTTCBHHHHHHHHHHHCGG-GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTC
T ss_pred             CeEE-EECCCCCcHHHHHHHHHHHCcH-HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCC
Confidence            3444 8888788999999999988762 10   000 00 023677788887765     34567777

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=85.68  E-value=8.6  Score=29.06  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=52.4

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC---------cccCCCCcccccCCC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG---------KILEDNMTIAESRLP   76 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G---------k~L~D~~tL~~~~i~   76 (108)
                      .+.++|.+++|.... +.+++++|+.+|=+.|....+    +.  +.+..-|.+.-         +.|+-++++.+-+..
T Consensus        85 ~~~~~V~l~dg~~~~-~~vd~~tt~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~  157 (371)
T 3ivf_A           85 QRPLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARIG----IT--NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE  157 (371)
T ss_dssp             EEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHTT----CS--CGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred             eeEEEEECcCCCEEE-EEECCCCCHHHHHHHHHHHcC----CC--CccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence            467889999999887 999999999999999999988    43  26677776642         345555566554433


Q ss_pred             CCCCCCcceEEEEEec
Q 033923           77 VVELPGTAITMHVVLR   92 (108)
Q Consensus        77 ~~~~~~~~~tvhlv~~   92 (108)
                      ..      .++++-++
T Consensus       158 ~~------~~l~frvK  167 (371)
T 3ivf_A          158 EH------ETLLLRRK  167 (371)
T ss_dssp             TT------CEEEEEEC
T ss_pred             CC------ceEEEEEE
Confidence            22      25666554

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=85.25  E-value=0.68  Score=31.00  Aligned_cols=33  Identities=9%  Similarity=0.064  Sum_probs=29.4

Q ss_pred             eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923           21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA   60 (108)
Q Consensus        21 ~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~   60 (108)
                      .+.+..++|+.+||+.|+...|    ++   ++.|||-..
T Consensus        59 ~~rv~k~~~~~~~~~~va~~lg----~~---~~~~RlW~~   91 (130)
T 2kvr_A           59 VFKVLKNSSLAEFVQSLSQTMG----FP---QDQIRLWPM   91 (130)
T ss_dssp             EEECCTTSBHHHHHHHHHHHHC----CC---GGGCEEEEC
T ss_pred             eEEEeccCcHHHHHHHHHHHhC----CC---cccEEEEEe
Confidence            3788899999999999999999    78   899999654

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=84.22  E-value=5.5  Score=24.62  Aligned_cols=68  Identities=16%  Similarity=0.207  Sum_probs=43.3

Q ss_pred             ceEEEEEEeC------CCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCC---C--CCCCceEEEEcCcccCCCCcccc
Q 033923            5 DLIELKFRLA------DGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENG---P--KTVNNVQLIHAGKILEDNMTIAE   72 (108)
Q Consensus         5 ~~i~i~~r~~------~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~---p--~~~~~qRLIy~Gk~L~D~~tL~~   72 (108)
                      ..++|+|++-      .|. ... ++++...||++|.+.+...++. +...   +  .-.....+.-+|+....     +
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~-~e~~~~~Tv~~Ll~~L~~~~p~-l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~   80 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEE-IELPEGARVRDLIEEIKKRHEK-FKEEVFGEGYDEDADVNIAVNGRYVSW-----D   80 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEE-EEECTTCBHHHHHHHHHHHCGG-GGGSCBCSSSCTTSSBEEEETTBCCCT-----T
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHhHChh-HHHHhhccccccCCcEEEEECCEECCC-----C
Confidence            3567777774      343 444 8888889999999999987652 1000   0  00245678888887753     4


Q ss_pred             cCCCCCC
Q 033923           73 SRLPVVE   79 (108)
Q Consensus        73 ~~i~~~~   79 (108)
                      ..+++||
T Consensus        81 ~~L~dGD   87 (98)
T 1vjk_A           81 EELKDGD   87 (98)
T ss_dssp             CBCCTTC
T ss_pred             CCCCCCC
Confidence            5677787

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=84.04  E-value=11  Score=33.45  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=58.0

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCC-CcCCCCCCCceEEEEcCc-----ccCC-CCcccccCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIHAGK-----ILED-NMTIAESRL   75 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~-~~i~p~~~~~qRLIy~Gk-----~L~D-~~tL~~~~i   75 (108)
                      .++.+.|-+-+.+|..+. +++..+.|+.++|+.|+.+-..- +-..-.+++.-.+.|-.+     .+.| .+.|.+...
T Consensus        48 ~~~~v~vd~LLPnGi~i~-~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~  126 (1092)
T 2y3a_A           48 SDGAISVDFLLPTGIYIQ-LEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRP  126 (1092)
T ss_dssp             CCSEEEEEEECTTCCEEE-EEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCB
T ss_pred             CCCceEEEEECCCceEEE-EEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeecc
Confidence            457899999999999887 99999999999999999872210 001123477778877433     2544 477888764


Q ss_pred             CCCCCCCcceEEEEEecC
Q 033923           76 PVVELPGTAITMHVVLRP   93 (108)
Q Consensus        76 ~~~~~~~~~~tvhlv~~~   93 (108)
                      -..       .+.|+-+.
T Consensus       127 ~~p-------~l~lve~~  137 (1092)
T 2y3a_A          127 FLP-------VLKLVTRS  137 (1092)
T ss_dssp             SSS-------CEEEEESC
T ss_pred             cce-------EEEEEecC
Confidence            322       67787773

>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}

Probab=83.29  E-value=3.7  Score=25.78  Aligned_cols=37  Identities=14%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             eEEEEEEeCCCCeeeeeEeC-CcchHHHHHHHHHhhCC
Q 033923            6 LIELKFRLADGADIGPSKFS-PTTTVASLKEKIISRWP   42 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~-~~~TV~~LK~~I~~~~~   42 (108)
                      +-.|.+|..+.++...+.++ ...+|.+||+.|..+..
T Consensus         6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k   43 (86)
T 2c7h_A            6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK   43 (86)
T ss_dssp             BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred             eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence            44677788877776667777 67899999999998776

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=83.07  E-value=8.6  Score=28.69  Aligned_cols=47  Identities=13%  Similarity=0.064  Sum_probs=37.1

Q ss_pred             eeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-ccCCC-CcccccC
Q 033923           21 PSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-ILEDN-MTIAESR   74 (108)
Q Consensus        21 ~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-~L~D~-~tL~~~~   74 (108)
                      .+.+.+..|+.+++++++.+.+    ++   ++.|.|+|.+. +.-|. ....+|.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~t~----i~---~~~q~~l~~~~~~~~~~~~~~~~~~  373 (396)
T 4eut_A          325 KIYIHSYNTATIFHELVYKQTK----II---SSNQELIYEGRRLVLEPGRLAQHFP  373 (396)
T ss_dssp             EEEECTTCBHHHHHHHHHHHHC----CC---STTEEEESSSSEECCCSSCBTTSSC
T ss_pred             EEEcCchhHHHHHHHHHHHhcC----CC---hhhhHHHhcCCCCCCCCCCccccCC
Confidence            3788899999999999999998    77   89999999994 44443 4444444

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=81.23  E-value=2.5  Score=26.68  Aligned_cols=51  Identities=8%  Similarity=0.132  Sum_probs=41.1

Q ss_pred             eEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923           22 SKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus        22 l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      -+++-..+++.||+.++.+.+    +.   -+.-.+--....|+++.+|.+-+++-..
T Consensus         7 qhmDI~epL~~Lk~LLe~Rl~----i~---L~~y~f~LQd~~L~~~k~LvdQcVqgeG   57 (89)
T 2juo_A            7 QAIDINEPIGNLKKLLEPRLQ----CS---LDAHEICLQDIQLDPDRSLFDQGVKTDG   57 (89)
T ss_dssp             EEEESSSBGGGHHHHSHHHHC----SC---CSSCEEEETTEECCTTSBTTTSSCCCCS
T ss_pred             hhccccCcHHHHHHHHHHHhc----CC---cccCeEEeeccccCCCccHHHhhccccc
Confidence            567778899999999999998    55   6666666677789999999998887443

>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C

Probab=80.92  E-value=7.9  Score=24.13  Aligned_cols=57  Identities=12%  Similarity=0.166  Sum_probs=45.5

Q ss_pred             eeEeCCcchHHHHHHHHHhhC-CCCCcCCCCCCCceEEEEcC--cccCCCCcccccCCCCCC
Q 033923           21 PSKFSPTTTVASLKEKIISRW-PKEKENGPKTVNNVQLIHAG--KILEDNMTIAESRLPVVE   79 (108)
Q Consensus        21 ~l~v~~~~TV~~LK~~I~~~~-~~~~~i~p~~~~~qRLIy~G--k~L~D~~tL~~~~i~~~~   79 (108)
                      -+-++.++|+.++-++++... |-.  ++|....-.|..+.|  +.|..+.|+++.+|.+-+
T Consensus        16 LV~VDt~dTmdqVA~kvA~HsVGrR--V~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e   75 (83)
T 2inc_C           16 LVPVDTEDTMDQVAEKCAYHSINRR--VHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE   75 (83)
T ss_dssp             EEEECTTCBHHHHHHHHHTTTBTTT--BCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred             EEEecCCCcHHHHHHHHhhhhccee--cCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence            378899999999999999643 222  444424478999999  999999999999999776

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=80.08  E-value=2  Score=31.79  Aligned_cols=78  Identities=9%  Similarity=-0.081  Sum_probs=53.6

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC-----cccCCCCcccccCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG-----KILEDNMTIAESRLPV   77 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G-----k~L~D~~tL~~~~i~~   77 (108)
                      ....+.++|.++||.... +.+++++|+.+|=+.|.+..+    +.  +.+..=|.|..     ..|+.++.+.+.... 
T Consensus        14 ~~~~~~~~V~lldgt~~~-~~vd~~tt~~el~~~v~~~l~----L~--e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~-   85 (296)
T 3qij_A           14 LYFQGHCKVSLLDDTVYE-CVVEKHAKGQDLLKRVCEHLN----LL--EEDYFGLAIWDNATSKTWLDSAKEIKKQVRG-   85 (296)
T ss_dssp             ---CCEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHT----CS--SGGGEEEEEEEETTEEEECCTTSBHHHHC---
T ss_pred             CCceEEEEEEccCCCEEE-EEECCCCCHHHHHHHHHHHcC----CC--CcceeEEEEEcCCCccchhccchhHHHhcCC-
Confidence            345689999999999887 999999999999999999988    43  15555555532     356667777665321 


Q ss_pred             CCCCCcceEEEEEecC
Q 033923           78 VELPGTAITMHVVLRP   93 (108)
Q Consensus        78 ~~~~~~~~tvhlv~~~   93 (108)
                           .+..+++-++-
T Consensus        86 -----~~~~l~frvkf   96 (296)
T 3qij_A           86 -----VPWNFTFNVKF   96 (296)
T ss_dssp             ------CCEEEEEESS
T ss_pred             -----CCcEEEEEEEE
Confidence                 13466666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	8e-33
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	2e-18
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	4e-08
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	3e-06
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-05
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	8e-05
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	9e-05
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	2e-04
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	4e-04
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	7e-04
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	0.002
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	0.003
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	0.004

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  108 bits (270), Expect = 8e-33
 Identities = 50/97 (51%), Positives = 70/97 (72%)

Query: 3   GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK 62
             + +E+KFRL DG+DIGP  F   TTV++LKE +IS WP+EKENGPKTV  V+LI AGK
Sbjct: 4   VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGK 63

Query: 63  ILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKK 99
           +LE++ T+ + R PV  L G   TMHV+++  + +K+
Sbjct: 64  VLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKE 100

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.9 bits (176), Expect = 2e-18
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 1   MAGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKE-KENGPKTVNNVQLIH 59
               D+I L+  L  G       FSP  + + + + +   WP + +E    + N ++LI+
Sbjct: 11  HVPADMINLRLILVSGKTK-EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY 69

Query: 60  AGKILEDNMTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNTHNH 106
            G+ L  N+T+   +LP     G    MH+V R +LP+       + 
Sbjct: 70  QGRFLHGNVTLGALKLP----FGKTTVMHLVARETLPEPNSQGQRSG 112

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 4e-08
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 23  KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG 82
                 +V  LK  +   +P+          + +LI++GK+L D+  + +      +   
Sbjct: 25  SGDRGWSVGHLKAHLSRVYPERPR-----PEDQRLIYSGKLLLDHQCLRDLLPKQEK--- 76

Query: 83  TAITMHVVLRPSLPDKKG 100
               +H+V         G
Sbjct: 77  -RHVLHLVCNVKSGPSSG 93

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (93), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 27 TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT 86
            +++ LK+ I  +     E+ P     + LI+ G+ L+D+ T+    +          T
Sbjct: 37 GYSISFLKQLIAGKLQ---ESVPDP-ELIDLIYCGRKLKDDQTLDFYGI------QPGST 86

Query: 87 MHVVLR 92
          +HV+ +
Sbjct: 87 VHVLRK 92

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (87), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 13/68 (19%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          +P +TV   KE I      +    P  V N +LI++GKIL+D+ T+    +      G  
Sbjct: 18 APESTVLQFKEAI-----NKANGIP--VANQRLIYSGKILKDDQTVESYHIQ----DGH- 65

Query: 85 ITMHVVLR 92
           ++H+V  
Sbjct: 66 -SVHLVKS 72

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 8e-05
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 15/87 (17%)

Query: 7  IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILED 66
          +E+  +  D              V   KE I         + P      +LI+ G++L+D
Sbjct: 1  LEVLVKTLDSQTR-TFIVGAQMNVKEFKEHI-----AASVSIP--SEKQRLIYQGRVLQD 52

Query: 67 NMTIAESRLPVVELPGTAITMHVVLRP 93
          +  + E  +           +H+V R 
Sbjct: 53 DKKLQEYNV-------GGKVIHLVERA 72

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 9e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRL-PVVELPGT 83
            ++TV  LK  +     +     P   +  +L    ++L+D  T+ E         P  
Sbjct: 18 KESSTVFELKRIV-----EGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQA 70

Query: 84 AITMHVVLRPS 94
            T+ +  R  
Sbjct: 71 PATVGLAFRAD 81

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 4  EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI 63
          ++ + +  R   G      +   T TVA LK+++        E      +   L   GK 
Sbjct: 1  DEPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQV-----SGLEGVQ--DDLFWLTFEGKP 52

Query: 64 LEDNMTIAESRLPVVELPGTAITMHVVLR 92
          LED + + E  L     P +  T+ + LR
Sbjct: 53 LEDQLPLGEYGLK----PLS--TVFMNLR 75

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAE 72
           P  TV  LKEKI +   ++       V   +LI+AGKIL D++ I +
Sbjct: 20 EPDETVKVLKEKIEAEKGRDA----FPVAGQKLIYAGKILSDDVPIRD 63

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 7e-04
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 24 FSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT 83
             T  V+ +K KI      E    P      +L + G  ++D+ ++A   +      G 
Sbjct: 28 LPLTDQVSVIKVKI-----HEATGMP--AGKQKLQYEGIFIKDSNSLAYYNM----ANGA 76

Query: 84 AITMHVVLR 92
             +H+ L+
Sbjct: 77 --VIHLALK 83

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (74), Expect = 0.002
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 25 SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
          S   T+  L+E++         +        +L + GK LE+  T+ +  +         
Sbjct: 20 SRKATIEELRERV-----WALFDVR--PECQRLFYRGKQLENGYTLFDYDVG----LND- 67

Query: 85 ITMHVVLRP 93
            + +++RP
Sbjct: 68 -IIQLLVRP 75

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.003
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 14/87 (16%)

Query: 25  SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA 84
            P  TV +LKEKI S   K+       V   +LI+AGKIL D+  + E ++         
Sbjct: 18  DPEETVKALKEKIESEKGKD----AFPVAGQKLIYAGKILNDDTALKEYKID----EKN- 68

Query: 85  ITMHVVLR----PSLPDKKGGNTHNHL 107
             + V++      S P       H+H 
Sbjct: 69  -FVVVMVTKPKAVSTPAPATLEHHHHH 94

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.9 bits (72), Expect = 0.004
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 2   AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISR--WPKEKENGPKTVN------ 53
           +G   + ++    DG  +         TV  LK+ I       +E+E G + ++      
Sbjct: 3   SGSSGMTVRVCKMDGEVMPVV-VVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWR 61

Query: 54  NVQLIHAGKILEDN-MTIAESRLPVVELPGTAITMHVVLRPSLPDKKGGNT 103
              L  AG+ L ++   + +  +           +  + +     +K G +
Sbjct: 62  TYHLTSAGEKLTEDRKKLRDYGI----RNRD--EVSFIKKLG---QKSGPS 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.96
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.93
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.89
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.89
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.88
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.88
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.87
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.86
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.86
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.85
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.85
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.84
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.83
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.83
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.82
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.82
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.82
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.8
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.8
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.8
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.8
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.79
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.78
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.77
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.76
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.74
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.71
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.68
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.68
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.63
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.62
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.61
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.51
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.51
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.41
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.4
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.06
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.95
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	97.86
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	97.46
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	96.02
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	94.02
d1s3si_	50	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.35
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	91.02
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	87.24
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	85.04
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	84.59
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	84.57
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	80.26

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=4.7e-29  Score=164.27  Aligned_cols=97  Identities=52%  Similarity=0.909  Sum_probs=89.2

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      .++.++|+||+.+|+++.++.+++++||.+||++|++.|+.+|+-.|.++++|||||+||+|+|+.+|++|+|..|+.++
T Consensus         4 ~~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~   83 (101)
T d1se9a_           4 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG   83 (101)
T ss_dssp             SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred             ccceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCC
Confidence            57899999999999998779999999999999999999998876556568999999999999999999999999998777


Q ss_pred             cceEEEEEecCCCCCCC
Q 033923           83 TAITMHVVLRPSLPDKK   99 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~~~   99 (108)
                      .+++||||+|++.+.++
T Consensus        84 ~~~tmHlVvrpp~~~~~  100 (101)
T d1se9a_          84 AVTTMHVIIQAPVTEKE  100 (101)
T ss_dssp             CCEEEEEEECCCSSCCC
T ss_pred             CceEEEEEeCCCCCccC
Confidence            88999999999888765

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.7e-25  Score=148.54  Aligned_cols=98  Identities=27%  Similarity=0.514  Sum_probs=85.2

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCc-CCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKE-NGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~-i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      .++.++|+|++.+|+++. |.|++++||.+||++|+..|+.+|+ ..+..+++|||||+||+|.|+.+|++|+|.+|+  
T Consensus        13 ~~~~i~i~v~~l~Gk~~~-~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~--   89 (116)
T d1wgha_          13 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--   89 (116)
T ss_dssp             CSSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC--
T ss_pred             CCCeEEEEEEEcCCCEEE-EEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCC--
Confidence            568899999999999998 9999999999999999999998874 223339999999999999999999999999886  


Q ss_pred             CcceEEEEEecCCCCCCCCCCCCC
Q 033923           82 GTAITMHVVLRPSLPDKKGGNTHN  105 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~~~~~~~~~~  105 (108)
                        ..+|||++|+..+.++.+.+.+
T Consensus        90 --~~~lhlv~r~~~~~p~s~~~~~  111 (116)
T d1wgha_          90 --TTVMHLVARETLPEPNSQGQRS  111 (116)
T ss_dssp             --EEEEEEEECSSCSSSCCSSCCC
T ss_pred             --EEEEEEEeCCCCCCCCcccccC
Confidence              5579999998877777665543

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-23  Score=130.82  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=77.6

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      ++...++|+||+.+|+++. ++|++++||.+||++|+.+.+    +|   +++|||||+||.|+|+.+|++|+|.+++  
T Consensus         3 ~~s~~mqI~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~g----ip---~~~qrLi~~Gk~L~d~~tL~~y~I~~~s--   72 (87)
T d1wh3a_           3 SGSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQQG----LP---KKQQQLEFQGQVLQDWLGLGIYGIQDSD--   72 (87)
T ss_dssp             CCSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHHTC----CC---TTTEEEEETTEECCSSSBHHHHTCCTTE--
T ss_pred             CCCCcEEEEEECCCCCEEE-EEECCcCcHHHHHHHHHHHHC----cC---hHHeEEEeeceEcCCCCcHHHcCCCCCC--
Confidence            4678899999999999998 999999999999999999999    88   9999999999999999999999999997  


Q ss_pred             CcceEEEEEecCCCCCC
Q 033923           82 GTAITMHVVLRPSLPDK   98 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~~~   98 (108)
                          +|||+.+.++++.
T Consensus        73 ----tl~l~~r~~~gp~   85 (87)
T d1wh3a_          73 ----TLILSKKKGSGPS   85 (87)
T ss_dssp             ----EEEEEECSCCCSC
T ss_pred             ----EEEEEecCCCCCC
Confidence                9999999887654

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.3e-23  Score=129.48  Aligned_cols=79  Identities=20%  Similarity=0.302  Sum_probs=74.2

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      +..++|+||+.+|+++. +++++++||++||++|++..+    +|   +++|||||+||.|+|+.+|++|+|++++    
T Consensus         1 g~e~qi~Vk~~~G~~~~-l~V~~~~tV~~lK~~I~~~~~----ip---~~~qrLi~~Gk~L~d~~tL~~y~I~~~s----   68 (80)
T d1ttna1           1 GYECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAAEG----VE---PGSQRWFFSGRPLTDKMKFEELKIPKDY----   68 (80)
T ss_dssp             CCSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHTTC----CC---STTCEEEETTEECCTTSHHHHCCCSSSC----
T ss_pred             CCeEEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHHhC----CC---cccEEEEECceEcCCCCcHHHcCCCCCC----
Confidence            46799999999999998 999999999999999999999    88   9999999999999999999999999997    


Q ss_pred             ceEEEEEecCCCC
Q 033923           84 AITMHVVLRPSLP   96 (108)
Q Consensus        84 ~~tvhlv~~~~~~   96 (108)
                        ++||+++.+.+
T Consensus        69 --ti~lvi~~p~~   79 (80)
T d1ttna1          69 --VVQVIVSQPVQ   79 (80)
T ss_dssp             --EEEEECCCSSC
T ss_pred             --EEEEEecCCCC
Confidence              99999987654

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6e-23  Score=128.53  Aligned_cols=75  Identities=23%  Similarity=0.349  Sum_probs=72.1

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||+.+|+++. +++++++||.+||++|++..+    +|   +++|||||+||.|+|+.+|++|+|++++      +
T Consensus         3 M~I~Vk~~~g~t~~-l~v~~~~tV~~lK~~i~~~~g----ip---~~~qrLi~~Gk~L~d~~tL~~y~I~~~s------t   68 (78)
T d2zeqa1           3 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAKRQG----VP---ADQLRVIFAGKELPNHLTVQNCDLEQQS------I   68 (78)
T ss_dssp             EEEEEESSSSSCEE-EEECTTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEEECTTCBGGGSSCCTTC------E
T ss_pred             eEEEEEcCCCCEEE-EEEcccccHHHHHHHHHHHHC----cC---hhHeEEEEeeeEcCCCCCHHHcCCCCCC------E
Confidence            68999999999998 999999999999999999999    88   8999999999999999999999999997      9


Q ss_pred             EEEEecCCC
Q 033923           87 MHVVLRPSL   95 (108)
Q Consensus        87 vhlv~~~~~   95 (108)
                      +||+.|+++
T Consensus        69 i~lv~R~rg   77 (78)
T d2zeqa1          69 VHIVQRPRR   77 (78)
T ss_dssp             EEEEESSCC
T ss_pred             EEEEeccCC
Confidence            999999986

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-22  Score=125.86  Aligned_cols=76  Identities=28%  Similarity=0.374  Sum_probs=72.2

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||+.+|+++. +++++++||.+||++|+...+    +|   +++|||+|+||.|+|+.+|++|+|++++      +
T Consensus         1 MqI~Vk~l~G~~~~-l~v~~~~tV~~lK~~I~~~~g----i~---~~~qrL~~~Gk~L~d~~tL~~y~i~~~s------~   66 (76)
T d1ogwa_           1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEG----IP---PDQQRLIFAGKQLEDGRTLSDYNIQKES------T   66 (76)
T ss_dssp             CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC------E
T ss_pred             CEEEEEcCCCCEEE-EEECCCCcHHHHHHhhhhhcC----CC---hHHEEeEECCeEcCCCCCHHHcCCCCCC------E
Confidence            47999999999998 999999999999999999999    88   9999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +||+++.+++
T Consensus        67 I~L~~rlrgG   76 (76)
T d1ogwa_          67 LHLVLRLRGG   76 (76)
T ss_dssp             EEEEECTTCC
T ss_pred             EEEEEecCCC
Confidence            9999998874

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.7e-22  Score=125.25  Aligned_cols=76  Identities=25%  Similarity=0.257  Sum_probs=72.1

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ++.++|+||..+|+++. +++++++||.+||++|++..+    ++   +++|||+|+||.|+|+.+|++|+|.+++    
T Consensus         1 d~~~qi~Vk~~~G~~~~-l~v~~~~tV~~lK~~I~~~~g----i~---~~~qrL~~~gk~L~d~~tL~~y~I~~~s----   68 (76)
T d1z2ma2           1 DEPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG----VQ---DDLFWLTFEGKPLEDQLPLGEYGLKPLS----   68 (76)
T ss_dssp             CCCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBGGGGTCCTTC----
T ss_pred             CCCEEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHhc----CC---hhHeEEEECCeECCCCCcHHHcCCCCCC----
Confidence            36799999999999998 999999999999999999999    88   9999999999999999999999999997    


Q ss_pred             ceEEEEEecC
Q 033923           84 AITMHVVLRP   93 (108)
Q Consensus        84 ~~tvhlv~~~   93 (108)
                        ++|+++|.
T Consensus        69 --ti~l~lRL   76 (76)
T d1z2ma2          69 --TVFMNLRL   76 (76)
T ss_dssp             --EEEEEECC
T ss_pred             --EEEEEEeC
Confidence              99999874

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=1.8e-22  Score=124.45  Aligned_cols=73  Identities=26%  Similarity=0.340  Sum_probs=69.3

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      +.|+||+.+|+++. ++|++++||++||++|+++.+    ++   +++|||||+||.|+|+.+|++|+|++++      +
T Consensus         1 M~I~Vk~~~G~~~~-l~V~~~~tV~~lK~~i~~~~g----i~---~~~qrLi~~Gk~L~d~~tL~~y~I~~~s------t   66 (73)
T d1bt0a_           1 MLIKVKTLTGKEIE-IDIEPTDTIDRIKERVEEKEG----IP---PVQQRLIYAGKQLADDKTAKDYNIEGGS------V   66 (73)
T ss_dssp             CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhC----CC---hHHEEEEECCeEcCCCCcHHHcCCCCCC------E
Confidence            46899999999998 999999999999999999999    88   9999999999999999999999999997      9


Q ss_pred             EEEEecC
Q 033923           87 MHVVLRP   93 (108)
Q Consensus        87 vhlv~~~   93 (108)
                      +|+++|.
T Consensus        67 i~lvlrL   73 (73)
T d1bt0a_          67 LHLVLAL   73 (73)
T ss_dssp             EEEEECC
T ss_pred             EEEEeeC
Confidence            9999874

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.8e-22  Score=126.75  Aligned_cols=79  Identities=27%  Similarity=0.344  Sum_probs=70.1

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||+.+|+++. ++|++++||++||++|+++.+.+. ++   +++|||||+||.|+|+.+|++|+|.+++      +
T Consensus         1 M~I~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~~~~~-i~---~~~qrLi~~Gk~L~d~~tL~~y~I~~~s------~   69 (95)
T d1uela_           1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDA-FP---VAGQKLIYAGKILNDDTALKEYKIDEKN------F   69 (95)
T ss_dssp             CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHCTTT-CC---TTTEEEEETTEECCTTSBGGGGTCCSSS------E
T ss_pred             CEEEEEeCCCCEEE-EEECCCccHHHHHHHHHhhhcccC-CC---ccceEEEECCeEccCCCcHHHcCCCCCC------E
Confidence            47899999999998 999999999999999998876332 56   8999999999999999999999999997      9


Q ss_pred             EEEEecCCCC
Q 033923           87 MHVVLRPSLP   96 (108)
Q Consensus        87 vhlv~~~~~~   96 (108)
                      +||+++.+.+
T Consensus        70 i~lv~~~~~~   79 (95)
T d1uela_          70 VVVMVTKPKA   79 (95)
T ss_dssp             EEEEESSCCC
T ss_pred             EEEEECCCCC
Confidence            9999875443

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-22  Score=124.36  Aligned_cols=73  Identities=21%  Similarity=0.288  Sum_probs=68.4

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceE
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAIT   86 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~t   86 (108)
                      ++|+||+.+|+++. ++|++++||.+||++|++..+    +|   +++|||||+||.|+|+.+|++|+|+ ++      +
T Consensus         1 m~I~Vk~~~g~~~~-l~V~~~~tV~~lK~~I~~~~g----ip---~~~qrLi~~Gk~L~d~~tL~dy~i~-~~------t   65 (73)
T d1wx9a1           1 LEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVS----IP---SEKQRLIYQGRVLQDDKKLQEYNVG-GK------V   65 (73)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHC----CC---TTTCCCEETTEECCSSSBHHHHTCT-TE------E
T ss_pred             CEEEEEcCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---hHHEEEEECCeEccCCCCHHHhCCC-CC------E
Confidence            58999999999998 999999999999999999999    88   9999999999999999999999995 65      8


Q ss_pred             EEEEecCC
Q 033923           87 MHVVLRPS   94 (108)
Q Consensus        87 vhlv~~~~   94 (108)
                      +||+.|++
T Consensus        66 i~lv~r~P   73 (73)
T d1wx9a1          66 IHLVERAP   73 (73)
T ss_dssp             EBCCCSSC
T ss_pred             EEEEecCC
Confidence            99999874

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.9e-21  Score=120.32  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=68.4

Q ss_pred             EEEEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            7 IELKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         7 i~i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      ++|+||+.+|+ ++....+++++||.+||++|+.+.+    +|   +++|||||+||.|+|+.+|++|+|.+++      
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~g----ip---~~~qrLi~~Gk~L~d~~tL~~y~I~~~s------   67 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD----VR---PECQRLFYRGKQLENGYTLFDYDVGLND------   67 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC----CC---TTTEEEEETTEECCSSSBHHHHTCCTTC------
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHC----CC---chhcEEEEEeeEecCCCCHHHcCCCCCC------
Confidence            57999999995 5652369999999999999999999    88   9999999999999999999999999997      


Q ss_pred             EEEEEecCC
Q 033923           86 TMHVVLRPS   94 (108)
Q Consensus        86 tvhlv~~~~   94 (108)
                      ++||++||.
T Consensus        68 ~i~lv~rpd   76 (76)
T d1wy8a1          68 IIQLLVRPD   76 (76)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEccC
Confidence            999999973

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.2e-21  Score=120.11  Aligned_cols=74  Identities=24%  Similarity=0.324  Sum_probs=68.1

Q ss_pred             EEEEEEeCCCC-eeeee-EeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            7 IELKFRLADGA-DIGPS-KFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         7 i~i~~r~~~g~-~~~~l-~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ++|+||+.+|+ ++. + .+++++||++||++|+++.+    +|   +++|||||+||.|+|+.+|++|+|++++     
T Consensus         1 M~I~Vktl~Gk~t~~-l~~v~~~~tV~~lK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~y~I~~~s-----   67 (76)
T d2faza1           1 MWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQELFH----VE---PGLQRLFYRGKQMEDGHTLFDYEVRLND-----   67 (76)
T ss_dssp             EEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTCBTTTTTCCTTC-----
T ss_pred             CEEEEEeCCCCcEEE-EecCCCCCCHHHHHHHHHHHHC----cC---hHHeEEEEeeEeccCCCcHHHcCCCCCC-----
Confidence            57999999997 565 6 49999999999999999999    88   9999999999999999999999999997     


Q ss_pred             eEEEEEecCC
Q 033923           85 ITMHVVLRPS   94 (108)
Q Consensus        85 ~tvhlv~~~~   94 (108)
                       ++||++|.+
T Consensus        68 -ti~lv~r~s   76 (76)
T d2faza1          68 -TIQLLVRQS   76 (76)
T ss_dssp             -EEEEEECCC
T ss_pred             -EEEEEEEcC
Confidence             999999863

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.6e-21  Score=119.17  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=69.3

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--cCcccCCCCcccccCCCCCCCCCcc
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--AGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      ++|+||+.+|+++. +++++++||.+||++|+.+.+    +|   +++|||||  +||.|+|+.+|++|||.+|+     
T Consensus         1 ~~l~Vk~l~G~~~~-v~V~~~~tV~~lK~~I~~~~g----ip---~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~-----   67 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQKIG----VH---AFQQRLAVHPSGVALQDRVPLASQGLGPGS-----   67 (76)
T ss_dssp             CEEEEEESSSCEEE-EECCSSCCHHHHHHHHHHHHC----CC---GGGEEEEEETTCCBCCSSSCSGGGTCCTTC-----
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhc----cC---CccEEEEEcCCCeeccCCCcHHHcCCCCCC-----
Confidence            47899999999998 999999999999999999999    88   99999999  79999999999999999998     


Q ss_pred             eEEEEEecC
Q 033923           85 ITMHVVLRP   93 (108)
Q Consensus        85 ~tvhlv~~~   93 (108)
                       ++||+++.
T Consensus        68 -~i~lv~~~   75 (76)
T d1z2ma1          68 -TVLLVVDK   75 (76)
T ss_dssp             -EEEEEECC
T ss_pred             -EEEEEEEC
Confidence             99999875

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-20  Score=120.28  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             CCCceEEEEEEeCCCC--eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            2 AGEDLIELKFRLADGA--DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~--~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      .+...++|+|+..++.  ++. +++++++||.+||++|++.++.+  ++   +++|||||+||+|+|+.+|++|....++
T Consensus         3 sgs~~i~l~Ik~~~~~~~~~~-~~v~~~~TV~~LK~~I~~~~~~~--~~---~~~qrLIy~Gk~L~D~~~L~d~~~~~~~   76 (93)
T d1wgda_           3 SGSSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPER--PR---PEDQRLIYSGKLLLDHQCLRDLLPKQEK   76 (93)
T ss_dssp             CCSCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTTC--CC---TTTCEEEETTEECCSSSCHHHHSCSSSC
T ss_pred             CCCCcEEEEEECCCCCceeEE-EEcCCCCcHHHHHHHHHHHcCCC--CC---hHHEEEEECCeEccCCCCHHHhCcccCC
Confidence            3566789999998775  466 89999999999999999998743  45   8999999999999999999999876554


Q ss_pred             CCCcceEEEEEecCCCCCC
Q 033923           80 LPGTAITMHVVLRPSLPDK   98 (108)
Q Consensus        80 ~~~~~~tvhlv~~~~~~~~   98 (108)
                          ..+||||+++..++.
T Consensus        77 ----~~viHLV~~~~~~p~   91 (93)
T d1wgda_          77 ----RHVLHLVCNVKSGPS   91 (93)
T ss_dssp             ----SEEEEEECCCCCCCC
T ss_pred             ----CCEEEEEecCCCCCC
Confidence                369999998876543

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.2e-20  Score=115.10  Aligned_cols=72  Identities=25%  Similarity=0.326  Sum_probs=65.5

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      +++|+|+.. ++++. +++++++||.+||++|+...+    +|   +++|||||+||.|+|+.+|++|+|.+|+      
T Consensus         1 si~I~Vk~~-~~~~~-i~v~~~~tV~~lK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~~~~I~~g~------   65 (73)
T d2bwfa1           1 SLNIHIKSG-QDKWE-VNVAPESTVLQFKEAINKANG----IP---VANQRLIYSGKILKDDQTVESYHIQDGH------   65 (73)
T ss_dssp             EEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBTGGGTCCTTC------
T ss_pred             CEEEEEEeC-CeEEE-EEECCCChHHHHHHHHHHHHC----cC---hHHeEEEECCeEccCCCcHHHCCCCCCC------
Confidence            477888875 44576 999999999999999999999    88   9999999999999999999999999997      


Q ss_pred             EEEEEec
Q 033923           86 TMHVVLR   92 (108)
Q Consensus        86 tvhlv~~   92 (108)
                      ++|||.+
T Consensus        66 ~i~lV~~   72 (73)
T d2bwfa1          66 SVHLVKS   72 (73)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEee
Confidence            9999986

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-20  Score=117.34  Aligned_cols=75  Identities=27%  Similarity=0.375  Sum_probs=67.4

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      .++|+||+.+|+++. +++++++||++||++|+...|.+. +|   +++|||||+||.|+|+.+|++|+|.+++      
T Consensus         2 ~~~i~vk~l~g~~~~-l~v~~~~TV~~lK~~i~~~~g~~~-i~---~~~qrLi~~Gk~L~D~~tL~~y~I~~~s------   70 (77)
T d1oqya4           2 AVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDA-FP---VAGQKLIYAGKILSDDVPIRDYRIDEKN------   70 (77)
T ss_dssp             CCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTCSSS-CC---STEEEEESSSSEECSSSBTTTTCCCTTS------
T ss_pred             cEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHhcCCCC-CC---hHHEEeEECCcCccCCCcHHHcCCCCCC------
Confidence            578999999999998 999999999999999999887321 56   8999999999999999999999999997      


Q ss_pred             EEEEEe
Q 033923           86 TMHVVL   91 (108)
Q Consensus        86 tvhlv~   91 (108)
                      ++++++
T Consensus        71 ~i~~~v   76 (77)
T d1oqya4          71 FVVVMV   76 (77)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            777765

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.5e-20  Score=117.67  Aligned_cols=78  Identities=27%  Similarity=0.368  Sum_probs=71.1

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ..+++|+|++.++ ++. +++++++||++||++|++..+    ++   ++.|||||+||.|+|+.+|++|+|.+|+    
T Consensus         5 ~~~i~I~Vkt~~~-~~~-~~V~~~~tV~~lK~~i~~~~g----i~---~~~qrL~~~Gk~L~D~~tL~~y~i~~gs----   71 (84)
T d1yqba1           5 PHLIKVTVKTPKD-KED-FSVTDTCTIQQLKEEISQRFK----AH---PDQLVLIFAGKILKDPDSLAQCGVRDGL----   71 (84)
T ss_dssp             TTEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTSBHHHHTCCTTC----
T ss_pred             CCEEEEEEEcCCC-cEE-EEECCCCcHHHHHHHHHHHHC----cC---chhEEEEEeeeeccccCcHHHcCCCCCC----
Confidence            4569999999866 466 999999999999999999999    88   9999999999999999999999999997    


Q ss_pred             ceEEEEEecCCCC
Q 033923           84 AITMHVVLRPSLP   96 (108)
Q Consensus        84 ~~tvhlv~~~~~~   96 (108)
                        +|||++++...
T Consensus        72 --ti~lv~r~~~~   82 (84)
T d1yqba1          72 --TVHLVIKRQHR   82 (84)
T ss_dssp             --EEEEEECCCCS
T ss_pred             --EEEEEECCCCC
Confidence              99999998654

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.1e-20  Score=117.53  Aligned_cols=75  Identities=17%  Similarity=0.206  Sum_probs=68.5

Q ss_pred             EEEEEEe----------CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCC
Q 033923            7 IELKFRL----------ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLP   76 (108)
Q Consensus         7 i~i~~r~----------~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~   76 (108)
                      +.|+|+.          .+|+++. +++++++||++||++|+++.+    +|   +++|||+|+||.|+|+.+|++|+|.
T Consensus         2 vti~v~~p~~~~~~~~~L~G~~~~-l~v~~~~tV~~lK~~I~~~~~----ip---~~~q~Li~~Gk~L~D~~tL~dY~I~   73 (86)
T d1zkha1           2 VSIKVQVPNMQDKTEWKLNGQVLV-FTLPLTDQVSVIKVKIHEATG----MP---AGKQKLQYEGIFIKDSNSLAYYNMA   73 (86)
T ss_dssp             EEEEEECCCCSSSSSSSCSSCEEE-EEECTTSBHHHHHHHHHHHTC----CC---TTTEEEEETTEEECTTSBHHHHTCC
T ss_pred             eEEEEEcCCCCcccccccCCeEEE-EEECCCChHHHHHHHHHhhhc----CC---hHHEEEEeCCcCcCCCCCHHHcCCC
Confidence            5667766          4788888 999999999999999999999    88   9999999999999999999999999


Q ss_pred             CCCCCCcceEEEEEecCCC
Q 033923           77 VVELPGTAITMHVVLRPSL   95 (108)
Q Consensus        77 ~~~~~~~~~tvhlv~~~~~   95 (108)
                      +|+      ++||+++.+|
T Consensus        74 ~gs------ti~l~~r~RG   86 (86)
T d1zkha1          74 NGA------VIHLALKERG   86 (86)
T ss_dssp             TTE------EEEEEESCCC
T ss_pred             CCC------EEEEEEecCC
Confidence            997      9999999764

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.7e-20  Score=115.73  Aligned_cols=71  Identities=15%  Similarity=0.259  Sum_probs=67.4

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcce
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAI   85 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~   85 (108)
                      .++|+|+...|+++. +++++++||.+||++|+.+.+    ++   +++|||+|+||.|+|+.+|++|+|.+|+      
T Consensus         1 mi~i~vk~~~Gk~~~-v~V~~~~tV~~lK~~I~~~~~----i~---~~~q~Li~~Gk~L~d~~tL~~y~I~~gs------   66 (73)
T d1m94a_           1 MIEVVVNDRLGKKVR-VKCLAEDSVGDFKKVLSLQIG----TQ---PNKIVLQKGGSVLKDHISLEDYEVHDQT------   66 (73)
T ss_dssp             CEEEEEEETTTEEEE-EEECTTSBHHHHHHHHHHHHC----CT---TTSEEEESSSCEECTTSBHHHHTCCTTE------
T ss_pred             CeEEEEECCCCCEEE-EEECCcCcHHHHHHHHHHhhc----cc---ccEEEEEEEeEEecccCcHHHcCCCCCC------
Confidence            478999999999998 999999999999999999999    78   8999999999999999999999999997      


Q ss_pred             EEEEE
Q 033923           86 TMHVV   90 (108)
Q Consensus        86 tvhlv   90 (108)
                      ++||.
T Consensus        67 tl~L~   71 (73)
T d1m94a_          67 NLELY   71 (73)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            89885

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=118.65  Aligned_cols=75  Identities=24%  Similarity=0.370  Sum_probs=68.7

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +...|+|+|+...+ .+. +++++++||.+||++|+...+    ++   +++|||||+||.|.|+.+|++|+|.+|+   
T Consensus        29 ~~~~i~V~Vk~~~~-~~~-i~V~~~~tV~~LK~~I~~~~g----i~---~~~qrLi~~Gk~L~D~~tL~~~~I~~g~---   96 (103)
T d1j8ca_          29 EPKIIKVTVKTPKE-KEE-FAVPENSSVQQFKEAISKRFK----SQ---TDQLVLIFAGKILKDQDTLIQHGIHDGL---   96 (103)
T ss_dssp             CCCCEEEEEECSSC-EEE-EEECTTCCHHHHHHHHHHHHC----SC---SSSEEEEETTEEESTTSCGGGTTCSSSE---
T ss_pred             CCCeEEEEEECCCc-cEE-EEECCCChHHHHHHHHHHHHC----cC---HHHeeeeeeeecccCCCcHHHcCCCCCC---
Confidence            45679999998776 456 999999999999999999999    88   8999999999999999999999999997   


Q ss_pred             cceEEEEEec
Q 033923           83 TAITMHVVLR   92 (108)
Q Consensus        83 ~~~tvhlv~~   92 (108)
                         +|||++|
T Consensus        97 ---~I~lvlr  103 (103)
T d1j8ca_          97 ---TVHLVIK  103 (103)
T ss_dssp             ---EEEEEEC
T ss_pred             ---EEEEEEC
Confidence               9999986

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.7e-20  Score=116.66  Aligned_cols=76  Identities=21%  Similarity=0.311  Sum_probs=69.3

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      .+..++|+|++.+++ .. +++++++||++||++|++..+    ++   ++.|||+|+||.|+|+.+|++|+|.+|+   
T Consensus         7 ~~~~i~v~Vk~~~~~-~~-i~v~~~~tV~~lK~~I~~~~~----v~---~~~qrL~f~Gk~L~d~~tL~~~gI~~gs---   74 (83)
T d1wx8a1           7 SSRIIRVSVKTPQDC-HE-FFLAENSNVRRFKKQISKYLH----CN---ADRLVLIFTGKILRDQDILSQRGILDGS---   74 (83)
T ss_dssp             CSCEEEEEEECSSSE-EE-EEEETTCCHHHHHHHHHHHTC----SC---TTTBCCEETTEECCTTSCHHHHTCCTTE---
T ss_pred             CCCeEEEEEEcCCCc-EE-EEECCCChHHHHHHHHHHHhC----CC---hhHEEEEEEhhccccCCcHHHcCCCCCC---
Confidence            457799999987654 55 999999999999999999999    78   8999999999999999999999999997   


Q ss_pred             cceEEEEEecC
Q 033923           83 TAITMHVVLRP   93 (108)
Q Consensus        83 ~~~tvhlv~~~   93 (108)
                         +|||++|.
T Consensus        75 ---~I~lv~r~   82 (83)
T d1wx8a1          75 ---TVHVVVRS   82 (83)
T ss_dssp             ---EEECCBCC
T ss_pred             ---EEEEEEeC
Confidence               99999875

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.8e-20  Score=120.04  Aligned_cols=75  Identities=16%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      +..++|+|+...|+++. ++|++++||++||++|+.+.+    +|   +++|||+|+||+|+|+.+|++|+|.+|+    
T Consensus        26 ~~~i~V~V~~~~Gk~~~-v~V~p~~TV~~LK~~I~~~~g----ip---~~~qrLi~~Gk~L~D~~tL~dygI~~Gs----   93 (100)
T d1uh6a_          26 ATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTG----TR---WNKIVLKKWYTIFKDHVSLGDYEIHDGM----   93 (100)
T ss_dssp             CCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHHHC----CC---GGGCEEEETTEECCSSCBHHHHTCCTTE----
T ss_pred             CceEEEEEECCCCCEEE-EEECCcChHHHHHHHHHHHHC----CC---cceEEEEEEeecccCcCCHHHcCCCCCC----
Confidence            45689999999999998 999999999999999999999    88   9999999999999999999999999997    


Q ss_pred             ceEEEEEec
Q 033923           84 AITMHVVLR   92 (108)
Q Consensus        84 ~~tvhlv~~   92 (108)
                        +|||..+
T Consensus        94 --tI~L~~~  100 (100)
T d1uh6a_          94 --NLELYYQ  100 (100)
T ss_dssp             --EEEEECC
T ss_pred             --EEEEEEC
Confidence              9998753

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=2e-19  Score=119.39  Aligned_cols=79  Identities=24%  Similarity=0.266  Sum_probs=70.6

Q ss_pred             eEEEEEEe---CCCCeeeeeEeCC-cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            6 LIELKFRL---ADGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         6 ~i~i~~r~---~~g~~~~~l~v~~-~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      .+.|+|+.   .+|+++. +.+.+ ++||.+||++|+++.+    +|   ++.|||+|+||.|+|+.+|++|+|.+++  
T Consensus        27 ~~ti~V~v~~~~~G~~i~-l~v~~~sdtV~~lK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~tL~~ynI~~gs--   96 (111)
T d1we6a_          27 PATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGEIQ----IP---ANKQKLSGKAGFLKDNMSLAHYNVGAGE--   96 (111)
T ss_dssp             CEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHHTT----CC---TTTSEEECSSSBCCTTSBTTTTTCSSSC--
T ss_pred             CEEEEEEcccCCCCeEEE-EEecCCccHHHHHHHHHHHHHC----CC---ccceEEEEeeEEccccCCHHHcCCCCCC--
Confidence            45556655   3688888 99987 9999999999999999    88   9999999999999999999999999998  


Q ss_pred             CcceEEEEEecCCCCCC
Q 033923           82 GTAITMHVVLRPSLPDK   98 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~~~   98 (108)
                          +|||+++.+++..
T Consensus        97 ----ti~L~lr~rGG~~  109 (111)
T d1we6a_          97 ----ILTLSLRERSGPS  109 (111)
T ss_dssp             ----EEEEECSSCCSSC
T ss_pred             ----EEEEEeeCCCCCC
Confidence                9999999998764

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.7e-19  Score=115.09  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=69.4

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC-CCCcccccCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLPVVEL   80 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~-D~~tL~~~~i~~~~~   80 (108)
                      .+...++|+||+.+|+.+. +++++++||.+||++|+.       ++   +++|||||+||.|. |..+|++|+|.+++ 
T Consensus         3 ~~~s~m~i~vK~l~~~~~~-v~v~~~~TV~~lK~~i~~-------~~---~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~-   70 (95)
T d1wiaa_           3 SGSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFP-------GQ---ESQMKLIYQGRLLQDPARTLSSLNITNNC-   70 (95)
T ss_dssp             CCCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSS-------ST---TTTCEEEETTEECCCSSCBTTTTTCCTTE-
T ss_pred             CCCCcEEEEEEcCCCCEEE-EEECCcCcHHHHHHHHhc-------CC---cceeEEEECCEEcccCCCCHHHcCCCCCC-
Confidence            4667899999999999998 999999999999999863       34   68999999999996 56899999999997 


Q ss_pred             CCcceEEEEEecCCCCC
Q 033923           81 PGTAITMHVVLRPSLPD   97 (108)
Q Consensus        81 ~~~~~tvhlv~~~~~~~   97 (108)
                           +|||+++++...
T Consensus        71 -----~v~l~~~~~~~~   82 (95)
T d1wiaa_          71 -----VIHCHRSPPGAA   82 (95)
T ss_dssp             -----EEEEECCCCCCC
T ss_pred             -----EEEEEEcCCCCC
Confidence                 999999876553

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-19  Score=117.71  Aligned_cols=84  Identities=18%  Similarity=0.103  Sum_probs=72.4

Q ss_pred             CCceEEEEE--EeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC
Q 033923            3 GEDLIELKF--RLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         3 ~~~~i~i~~--r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~   80 (108)
                      |..+++|++  |...|+++. +++++++||.+||++|++..+    ++   +++|||||+||.|+|+.+|++|+|.+++ 
T Consensus        14 g~ati~V~~~~~~~~g~~~~-lev~~~~TV~~LK~~I~~~~g----i~---~~~qkLi~~Gk~L~d~~tL~~~gI~~~s-   84 (100)
T d1wjua_          14 GIATIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAETFG----LQ---ENYIKIVINKKQLQLGKTLEEQGVAHNV-   84 (100)
T ss_dssp             CEEEEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHHTT----CC---STTCEEEETTEECCTTSBHHHHTCCSSE-
T ss_pred             ceEEEEEEEeeccCCCeEEE-EEECCCcHHHHHHHHHHHHHC----CC---CeeEEEEEcccCcCCCcCHHHcCCCCCC-
Confidence            334566666  446789998 999999999999999999999    88   8999999999999999999999999996 


Q ss_pred             CCcceEEEEEecCCCCCCCC
Q 033923           81 PGTAITMHVVLRPSLPDKKG  100 (108)
Q Consensus        81 ~~~~~tvhlv~~~~~~~~~~  100 (108)
                           ++|++.....+.+.+
T Consensus        85 -----~i~vi~~~~~~~p~s   99 (100)
T d1wjua_          85 -----KAMVLELKQSSGPSS   99 (100)
T ss_dssp             -----EEEEECCCCCCCSCC
T ss_pred             -----EEEEEEcCCCCCCCC
Confidence                 899888776665544

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=9e-19  Score=113.12  Aligned_cols=80  Identities=9%  Similarity=0.077  Sum_probs=71.6

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~   81 (108)
                      ++...++|+|+..+++.+. +++++++||.+||++|++..+    +|   +++|||||+||.|+|+ +|++|+|.+|+  
T Consensus         3 s~s~~~~I~VK~~~~~~~~-v~v~~~~tV~~lK~~i~~~~g----vp---~~~QkLi~~Gk~L~d~-tL~~~gi~~g~--   71 (96)
T d1wgga_           3 SGSSGYSVTVKWGKEKFEG-VELNTDEPPMVFKAQLFALTG----VQ---PARQKVMVKGGTLKDD-DWGNIKMKNGM--   71 (96)
T ss_dssp             SCCCEEEEEEEETTEEEEE-EEEESSSCHHHHHHHHHHHTC----CC---TTTSCCEETTEECCSS-CCCSCCCCSSC--
T ss_pred             CCCCceEEEEEeCCCCEEE-EEECCCCcHHHHHHHhhhhcC----cc---ceeeEEeecCcccCCC-cHHHCCCCCCC--
Confidence            4678899999999998777 999999999999999999999    88   9999999999999986 79999999998  


Q ss_pred             CcceEEEEEecCCCC
Q 033923           82 GTAITMHVVLRPSLP   96 (108)
Q Consensus        82 ~~~~tvhlv~~~~~~   96 (108)
                          +|||+......
T Consensus        72 ----~i~lv~t~~~~   82 (96)
T d1wgga_          72 ----TVLMMGSADAL   82 (96)
T ss_dssp             ----EEECCCCCCCC
T ss_pred             ----EEEEEeeCCcC
Confidence                99998764433

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2e-18  Score=112.83  Aligned_cols=81  Identities=9%  Similarity=0.101  Sum_probs=70.4

Q ss_pred             CCceEEEEE----EeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC-CCCcccccCCCC
Q 033923            3 GEDLIELKF----RLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLPV   77 (108)
Q Consensus         3 ~~~~i~i~~----r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~-D~~tL~~~~i~~   77 (108)
                      +...+.|+|    |..+|.++. +++++++||.+||++|+.+.+    +|   +++|||||+||.|. |..+|++|+|.+
T Consensus         4 ~~~~m~itV~~~~~~~~~~t~~-l~V~~~~tV~~LK~~Ie~~~g----ip---~~~Q~Li~~Gk~L~dd~~tL~~~gI~~   75 (102)
T d1v5oa_           4 GSSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESG----VP---AEEAQIVYMEQLLTDDHCSLGSYGLKD   75 (102)
T ss_dssp             CSCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHHTC----CC---GGGBCEEETTEEECCSSSBHHHHTCCT
T ss_pred             CcCCEEEEEEecccCCCCCEEE-EEECCcccHHHHHHHHHHHhC----CC---cceEEEEeCCeEeecccCCHHHcCCCC
Confidence            445567777    556789988 999999999999999999999    88   99999999999995 567999999999


Q ss_pred             CCCCCcceEEEEEecCCCCC
Q 033923           78 VELPGTAITMHVVLRPSLPD   97 (108)
Q Consensus        78 ~~~~~~~~tvhlv~~~~~~~   97 (108)
                      |+      +|||+.+.....
T Consensus        76 g~------~i~l~~r~~~~~   89 (102)
T d1v5oa_          76 GD------MVVLLQKDNVGL   89 (102)
T ss_dssp             TE------EEEECBCCCCCC
T ss_pred             CC------EEEEEECCCCCC
Confidence            97      999998876554

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-18  Score=114.47  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             EEEEeCCCC-eeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCC-CCcceE
Q 033923            9 LKFRLADGA-DIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVEL-PGTAIT   86 (108)
Q Consensus         9 i~~r~~~g~-~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~-~~~~~t   86 (108)
                      |+|++..++ ++. +++++++||.+||++|++..+    ++   +++|||||+||.|+|+.+|++|||..+++ +.++.+
T Consensus         2 ifv~i~~~k~Ti~-l~v~~~~TV~~lK~~I~~~~g----ip---~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~   73 (103)
T d2c9wb1           2 VFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILK----RP---PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT   73 (103)
T ss_dssp             EEEEEEEBTEEEE-EEECTTSBHHHHHHHHHHHHC----CC---GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEE
T ss_pred             EEEEEeCCCEEEE-EEeCCCCcHHHHHHHHHHHhC----CC---cccEEEEECCEEcCCCCCHHHcCCCcccccccCCcE
Confidence            555555565 555 999999999999999999999    88   99999999999999999999999987765 467789


Q ss_pred             EEEEecCCCCCC
Q 033923           87 MHVVLRPSLPDK   98 (108)
Q Consensus        87 vhlv~~~~~~~~   98 (108)
                      +||+++..+..+
T Consensus        74 ~~l~~~~~~~~~   85 (103)
T d2c9wb1          74 VGLAFRADDTFE   85 (103)
T ss_dssp             EEEEEEETTEEC
T ss_pred             EEEEEecCCCcc
Confidence            999998776543

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=6.2e-19  Score=115.69  Aligned_cols=80  Identities=15%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceE---------------EEEcCcccCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQ---------------LIHAGKILED   66 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qR---------------LIy~Gk~L~D   66 (108)
                      ++...++|+|+..+|+.+. ++|++++||.+||++|+...+    ++   +++||               |||+|+.|.|
T Consensus         3 sgss~M~v~Vk~~~G~~~~-v~V~~~~TV~~LK~~I~~~~~----ip---~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d   74 (105)
T d1v2ya_           3 SGSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYVQ----LK---QEREGGVQHISWSYVWRTYHLTSAGEKLTE   74 (105)
T ss_dssp             CCCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHH----HH---HHHTTCCCCCCHHHHHTTEEEESSSCEECC
T ss_pred             CCCCcEEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHHHC----cC---HHHhcccccccccccccceEEEECCEECcc
Confidence            4677899999999999998 999999999999999999988    77   78877               9999999976


Q ss_pred             C-CcccccCCCCCCCCCcceEEEEEecCCC
Q 033923           67 N-MTIAESRLPVVELPGTAITMHVVLRPSL   95 (108)
Q Consensus        67 ~-~tL~~~~i~~~~~~~~~~tvhlv~~~~~   95 (108)
                      + .+|++|+|.+++      +||||.+++.
T Consensus        75 ~~~tL~~~gI~~g~------~l~lv~r~~~   98 (105)
T d1v2ya_          75 DRKKLRDYGIRNRD------EVSFIKKLGQ   98 (105)
T ss_dssp             SSSBHHHHTCCSSE------EEEEEECSCS
T ss_pred             cCCCHHHcCCCCCC------EEEEEEecCC
Confidence            5 589999999997      9999999753

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=8.6e-18  Score=108.23  Aligned_cols=79  Identities=20%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPG   82 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~   82 (108)
                      +.+.+.|+|+. +++++. ++|++++||.+||++|++..+    +|   +++|||||+|+ |.|+.+|++|+|.+++   
T Consensus        14 ~~~~i~v~V~~-~~k~~~-i~v~~~~TV~~LK~~I~~~tg----vp---~~~q~Li~~g~-l~D~~tL~~~~I~~gs---   80 (95)
T d1v86a_          14 GKELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSITG----LP---PAMQKVMYKGL-VPEDKTLREIKVTSGA---   80 (95)
T ss_dssp             CCCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHHHC----SC---STTCCCBSSSB-CCSSSBHHHHCCCTTE---
T ss_pred             CccEEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHhC----CC---hhHEEEEeccc-ccCCCcHHHCCCCCCC---
Confidence            45678888874 777787 999999999999999999999    88   89999999997 8999999999999997   


Q ss_pred             cceEEEEEecCCCCC
Q 033923           83 TAITMHVVLRPSLPD   97 (108)
Q Consensus        83 ~~~tvhlv~~~~~~~   97 (108)
                         +|||+.+...++
T Consensus        81 ---~i~lvgs~~~gp   92 (95)
T d1v86a_          81 ---KIMVVGSTISGP   92 (95)
T ss_dssp             ---EEEECCSSCCCC
T ss_pred             ---EEEEEecCCCCC
Confidence               999997765543

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=9.5e-17  Score=103.64  Aligned_cols=58  Identities=22%  Similarity=0.309  Sum_probs=51.4

Q ss_pred             CcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEEEEecC
Q 033923           26 PTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMHVVLRP   93 (108)
Q Consensus        26 ~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvhlv~~~   93 (108)
                      .++||.+||++|++.++..   .|+ +++|||||+||.|+|+.+|++|+|.+|+      ++|||.|.
T Consensus        36 ~~~tV~~lK~~i~~~~~~~---~P~-p~~~rLIy~Gk~L~D~~tL~~y~I~~gs------tihLV~r~   93 (94)
T d1x1ma1          36 GGYSISFLKQLIAGKLQES---VPD-PELIDLIYCGRKLKDDQTLDFYGIQPGS------TVHVLRKS   93 (94)
T ss_dssp             CCCBHHHHHHHHHHHCTTT---CCC-SSSEEEEETTEECCTTCBHHHHTCCTTC------EEEEEESS
T ss_pred             CccCHHHHHHHHHHHcccC---CCC-hhheEEEECCeEECCCccHHHcCCCCCC------EEEEEEeC
Confidence            4789999999999998842   233 7999999999999999999999999997      99999874

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5.7e-17  Score=103.10  Aligned_cols=81  Identities=15%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE---EcCcccCCCCcccccCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI---HAGKILEDNMTIAESRLPVV   78 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI---y~Gk~L~D~~tL~~~~i~~~   78 (108)
                      ++-..+.|+|+. .|+.+..+++++++||.+||++|++..+    +|   +++||||   |.||.|+|+.+|++|+|.+|
T Consensus         3 s~s~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~----vp---~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g   74 (90)
T d1v5ta_           3 SGSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG----VL---PERQKLLGLKVKGKPAENDVKLGALKLKPN   74 (90)
T ss_dssp             CCCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC----CC---TTTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred             CCCCcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHc----CC---HHHhhhhhhccCCcCCCCcCcHHHcCCCCC
Confidence            345678888987 4455552479999999999999999999    88   9999999   58999999999999999999


Q ss_pred             CCCCcceEEEEEecCCCC
Q 033923           79 ELPGTAITMHVVLRPSLP   96 (108)
Q Consensus        79 ~~~~~~~tvhlv~~~~~~   96 (108)
                      +      +|||+.++..+
T Consensus        75 ~------~i~lv~s~~~~   86 (90)
T d1v5ta_          75 T------KIMMMGTRESG   86 (90)
T ss_dssp             E------EEEEECCCSSS
T ss_pred             C------EEEEEeeCCCC
Confidence            7      99999887654

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.1e-15  Score=98.32  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             CCceEEEEEEeC-CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-------ccCCCCcccccC
Q 033923            3 GEDLIELKFRLA-DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-------ILEDNMTIAESR   74 (108)
Q Consensus         3 ~~~~i~i~~r~~-~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-------~L~D~~tL~~~~   74 (108)
                      |...+.|+|... ++...+ .++++++||.+||++|+...|    +|   +++|||+|.|+       +++|+.+|++|+
T Consensus         4 gss~v~v~I~s~~~~~~~E-~r~~~~~TV~~LK~kle~~tG----ip---~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~   75 (95)
T d1v6ea_           4 GSSGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLELVVG----SP---ASCMELELYGADDKFYSKLDQEDALLGSYP   75 (95)
T ss_dssp             CCCCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHHHTC----SC---TTTCBCEEECSSSCEEEECCCSSSBTTSSS
T ss_pred             CCCcEEEEEEECCCCcEEE-EEeCCCCCHHHHHHHHHHHhC----cC---chhEEEEEeCCCCceeecccCCcCCHHHCC
Confidence            456788999883 565666 999999999999999999999    88   99999999998       689999999999


Q ss_pred             CCCCCCCCcceEEEEEecCCCCC
Q 033923           75 LPVVELPGTAITMHVVLRPSLPD   97 (108)
Q Consensus        75 i~~~~~~~~~~tvhlv~~~~~~~   97 (108)
                      +.+|.      +|||+.+.+.+.
T Consensus        76 i~dg~------~ihlvd~~p~~~   92 (95)
T d1v6ea_          76 VDDGC------RIHVIDHSGSGP   92 (95)
T ss_dssp             CCTTC------EEEEBCCSCCSS
T ss_pred             CCCCC------EEEEEeCCCCCC
Confidence            99997      999999887654

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.62  E-value=1.4e-15  Score=94.42  Aligned_cols=78  Identities=17%  Similarity=0.151  Sum_probs=70.9

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGT   83 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~   83 (108)
                      ++.|.|+++. +|..+. |.+.+++++..|++.++++.+    ++   ++++||+|.|+.|.|+.|+++|+|.+++    
T Consensus         2 ~~~I~ikv~~-~~~~~~-f~v~~~~~~~~l~~~~~~~~~----i~---~~~~~l~f~G~~l~~~~T~~~~~i~dgd----   68 (79)
T d1euvb_           2 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQG----KE---MDSLRFLYDGIRIQADQTPEDLDMEDND----   68 (79)
T ss_dssp             CSEEEEEEES-SSCEEE-EEEETTSCTHHHHHHHHHHTT----CC---GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred             CcEEEEEECC-CCeEEE-EEECCCCcHHHHHHHHHHHhC----CC---hHhEEEEECCEEeCCCCCHHHCCCCCCC----
Confidence            4568888875 678887 999999999999999999999    77   8999999999999999999999999998    


Q ss_pred             ceEEEEEecCCCC
Q 033923           84 AITMHVVLRPSLP   96 (108)
Q Consensus        84 ~~tvhlv~~~~~~   96 (108)
                        ++|++++..++
T Consensus        69 --~I~v~~~q~GG   79 (79)
T d1euvb_          69 --IIEAHREQIGG   79 (79)
T ss_dssp             --EEEEEECCBCC
T ss_pred             --EEEEEEeccCC
Confidence              99999998764

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=94.67  Aligned_cols=73  Identities=11%  Similarity=0.066  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCCeeeeeEe-----CCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccC-CCCcccccCCCCCCC
Q 033923            7 IELKFRLADGADIGPSKF-----SPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILE-DNMTIAESRLPVVEL   80 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v-----~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~-D~~tL~~~~i~~~~~   80 (108)
                      ++|+|.. .+..+. +++     ++++||++||++|+...+    +|   +++|||+|+|+.|. |+.+|++|+|.+|+ 
T Consensus         2 i~i~V~~-~~~~~~-i~v~~~~~~~~~Tv~~LK~~I~~~tg----vp---~~~QkL~~~G~~L~~d~~tL~~~gi~~g~-   71 (81)
T d1wxva1           2 LTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEVIG----VP---QSFQKLIFKGKSLKEMETPLSALGIQDGC-   71 (81)
T ss_dssp             EEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHHTC----CC---TTTCEEEETTEEECCSSSBHHHHTCCSSE-
T ss_pred             EEEEEEE-CCeeEE-EEEecCCCCCccHHHHHHHHHHHHHC----cC---HHHEEeeecCeEeCcCCCChHHCCCCCCC-
Confidence            4556533 444444 666     578999999999999999    88   99999999999995 66899999999997 


Q ss_pred             CCcceEEEEEecCC
Q 033923           81 PGTAITMHVVLRPS   94 (108)
Q Consensus        81 ~~~~~tvhlv~~~~   94 (108)
                           +++|+.+..
T Consensus        72 -----~i~lv~~~~   80 (81)
T d1wxva1          72 -----RVMLIGKKN   80 (81)
T ss_dssp             -----EEEEESCCS
T ss_pred             -----EEEEEEecC
Confidence                 999998754

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=8e-14  Score=89.59  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             CceEEEEEEeC---CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcc-------c-CCCCcccc
Q 033923            4 EDLIELKFRLA---DGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKI-------L-EDNMTIAE   72 (108)
Q Consensus         4 ~~~i~i~~r~~---~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~-------L-~D~~tL~~   72 (108)
                      +..++|+|+..   +++.++ +++++++||.+||.+|+...+    +|   ++.|||+|.|+.       | .|+++|.+
T Consensus         7 ~~~iti~i~~~~~~~~~~~~-~kv~~~~TV~~LK~~i~~~~g----ip---~~~qrL~y~~~~~~~~~~~l~~d~~tL~~   78 (97)
T d1wjna_           7 GQLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRLLK----VP---VSELLLSYESSKMPGREIELENDLQPLQF   78 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTTTT----CC---TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred             CCeEEEEEEeCCCCCCceEE-EEcCCCCCHHHHHHHHHHHHC----cC---hHHeEEEecCCCCCcccceecCCCcCHhh
Confidence            46788999875   466777 999999999999999999999    88   999999999983       3 47899999


Q ss_pred             cCCCCCCCCCcceEEEEEe
Q 033923           73 SRLPVVELPGTAITMHVVL   91 (108)
Q Consensus        73 ~~i~~~~~~~~~~tvhlv~   91 (108)
                      |+|.+|+      ++||..
T Consensus        79 YgI~dg~------~I~V~~   91 (97)
T d1wjna_          79 YSVENGD------CLLVRW   91 (97)
T ss_dssp             GTCCTTC------EEEEEC
T ss_pred             ccCCCCC------EEEEEe
Confidence            9999998      888753

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.3e-14  Score=87.75  Aligned_cols=77  Identities=25%  Similarity=0.270  Sum_probs=71.8

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTA   84 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~   84 (108)
                      +.|.|+++..+|+.+. +.+.+++++..|++..+++.+    ++   ++++||+|.|+.|.++.|++++++.+|+     
T Consensus         1 e~I~ikv~~~dg~~v~-f~v~~~t~l~kl~~~y~~~~~----~~---~~~~~f~fdG~~l~~~~T~~~l~~edgD-----   67 (77)
T d2uyzb1           1 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQG----VP---MNSLRFLFEGQRIADNHTPKELGMEEED-----   67 (77)
T ss_dssp             CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHT----CC---GGGEEEEETTEECCTTCCHHHHTCCTTE-----
T ss_pred             CEEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhC----CC---hhHEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence            4689999999999998 999999999999999999988    67   8999999999999999999999999998     


Q ss_pred             eEEEEEecCCC
Q 033923           85 ITMHVVLRPSL   95 (108)
Q Consensus        85 ~tvhlv~~~~~   95 (108)
                       +++++++..|
T Consensus        68 -~Idv~~~q~G   77 (77)
T d2uyzb1          68 -VIEVYQEQTG   77 (77)
T ss_dssp             -EEEEEECCCC
T ss_pred             -EEEEEEecCC
Confidence             9999988654

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.41  E-value=8.9e-13  Score=83.58  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             eEEEEEEe-CCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-------ccCCCCcccccCCCC
Q 033923            6 LIELKFRL-ADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-------ILEDNMTIAESRLPV   77 (108)
Q Consensus         6 ~i~i~~r~-~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-------~L~D~~tL~~~~i~~   77 (108)
                      .+.|.|.. ..+..++ .++++++||++||++|+...|    +|   ++.|||+|.|+       +++|+.+|++|++.+
T Consensus         4 ~~~l~it~~~t~~~~E-~r~~~~~TV~~LK~kle~~~G----ip---~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~d   75 (90)
T d1t0ya_           4 VYDLEITTNATDFPME-KKYPAGMSLNDLKKKLELVVG----TT---VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD   75 (90)
T ss_dssp             EEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHHHC----CC---TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred             EEEEEEEECCCccEEE-EecCCCCCHHHHHHHHHHHHC----CC---hhheEEEEeCCCCCcccccccCCCCHHHCCCCC
Confidence            45566655 3455566 889999999999999999999    88   99999999998       567899999999999


Q ss_pred             CCCCCcceEEEEEecCCCC
Q 033923           78 VELPGTAITMHVVLRPSLP   96 (108)
Q Consensus        78 ~~~~~~~~tvhlv~~~~~~   96 (108)
                      |.      +|||+=...+.
T Consensus        76 G~------~Ihvvd~~~~~   88 (90)
T d1t0ya_          76 GY------RIHAVDVTGGN   88 (90)
T ss_dssp             SE------EEEEEECTTCC
T ss_pred             CC------EEEEEeCCCCC
Confidence            96      99998766554

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.2e-08  Score=59.62  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=60.6

Q ss_pred             EEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCC
Q 033923            7 IELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVE   79 (108)
Q Consensus         7 i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~   79 (108)
                      |.|+|+..+|+.+. +.+.++++...|.+...+..+    ++   ++.+||+|.|+.|..+.|.+++++.+|+
T Consensus         2 I~lkv~~~~g~~v~-f~vk~~t~l~kl~~~y~~~~~----~~---~~~~~f~fdG~~i~~~~Tp~~l~med~D   66 (72)
T d1wm3a_           2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQG----LS---MRQIRFRFDGQPINETDTPAQLEMEDED   66 (72)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHHHT----CC---TTTCEEEETTEECCTTCCTTTTTCCTTE
T ss_pred             EEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHHhC----CC---ccceEEEECCEEcCCCCCHHHcCCCCCC
Confidence            68899989999998 999999999999999998887    66   7899999999999999999999999998

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.40  E-value=3e-07  Score=58.10  Aligned_cols=70  Identities=23%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             EEEEEeCCCCeeeeeEeCC-cchHHHHHHHHHhhCCCCCcCCCCCCCceEEEE--------------cCcccCC-CCccc
Q 033923            8 ELKFRLADGADIGPSKFSP-TTTVASLKEKIISRWPKEKENGPKTVNNVQLIH--------------AGKILED-NMTIA   71 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~-~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy--------------~Gk~L~D-~~tL~   71 (108)
                      -|++|.-+|.. + ++++. ..||++||++|++..+    +|   .++|+|.-              .-..|.| ..+|+
T Consensus         2 iiRiRsrdG~e-R-v~v~~~~~Tl~~LK~~Ie~~L~----VP---v~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~   72 (94)
T d1wf9a1           2 MLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQDQLQ----IP---IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRIS   72 (94)
T ss_dssp             EEEEECSSCEE-E-EEECCTTSBHHHHHHHHHHHSC----CC---TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGG
T ss_pred             eEEEEecCCce-E-EEecCCCCcHHHHHHHHHHHhC----CC---cccceeecChhhhccCCccccchhhhccCCccCHH
Confidence            37899999964 4 88864 6899999999999999    88   89999933              2223554 46699


Q ss_pred             ccCCCCCCCCCcceEEEEEec
Q 033923           72 ESRLPVVELPGTAITMHVVLR   92 (108)
Q Consensus        72 ~~~i~~~~~~~~~~tvhlv~~   92 (108)
                      +|||.+|+      .+||.-.
T Consensus        73 sl~i~hGs------ivyL~y~   87 (94)
T d1wf9a1          73 SLNLAHGS------MVYLAYE   87 (94)
T ss_dssp             GTCCCTTC------EEECCCS
T ss_pred             HcCccCce------EEEEEee
Confidence            99999997      7887543

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=1.5e-05  Score=49.16  Aligned_cols=70  Identities=24%  Similarity=0.408  Sum_probs=56.9

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc--Cccc-CCCCcccccCCCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA--GKIL-EDNMTIAESRLPVV   78 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~--Gk~L-~D~~tL~~~~i~~~   78 (108)
                      ..++...|.||+.+|..+. ..|.++++|++|.+-+....+.   ..   .....|+..  -|.| +++.||.++|+.+.
T Consensus        10 e~~p~t~I~iRlPdG~~~~-~~F~~~~tl~dv~~~v~~~~~~---~~---~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s   82 (89)
T d1i42a_          10 EAEPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA---MA---ATSFVLMTTFPNKELADENQTLKEANLLNA   82 (89)
T ss_dssp             TTSCCEEEEEEETTTCCEE-EEECSSSCGGGHHHHHHHHCTT---TS---SCCEEEEETTTTEECCCCSSCSGGGTTCCS
T ss_pred             CCCCcEEEEEEcCCCCEEE-EEECCchhHHHHHHHHHHhCcc---CC---CCCEEEecCCCCcccCCCcCcHHHCCCcCc
Confidence            4567889999999999988 9999999999999999886542   23   567888876  4566 45799999999854

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.9e-05  Score=46.38  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=54.5

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC---CCCcccccCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE---DNMTIAESRLP   76 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~---D~~tL~~~~i~   76 (108)
                      |.|....|.||+.+|..+. -.|.+++||.+|.+-|.....     .   +....|+  |-.|.|.   ++.||.++|+-
T Consensus         1 n~e~~~~i~iRlPdG~~~~-~~F~~~~tl~~v~~~v~~~~~-----~---~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~   71 (82)
T d1h8ca_           1 NAEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVASKGF-----P---WDEYKLLSTFPRRDVTQLDPNKSLLEVKLF   71 (82)
T ss_dssp             CCCCCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHTC-----C---SSSEEEEETTTTEETTTCCTTSBHHHHCCC
T ss_pred             CCCCcEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHhcCC-----C---CCceEEEecCcccccccccccCCHHHCCCC
Confidence            4677889999999999988 899999999999999987532     3   4455554  4666673   46799999997


Q ss_pred             CCC
Q 033923           77 VVE   79 (108)
Q Consensus        77 ~~~   79 (108)
                      +..
T Consensus        72 p~~   74 (82)
T d1h8ca_          72 PQE   74 (82)
T ss_dssp             SEE
T ss_pred             CCC
Confidence            653

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=8e-05  Score=46.03  Aligned_cols=74  Identities=14%  Similarity=0.168  Sum_probs=56.8

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--cccC--CCCcccccCCCCC
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--KILE--DNMTIAESRLPVV   78 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k~L~--D~~tL~~~~i~~~   78 (108)
                      +++.+.|.||+.+|+.+. -.|..++||.+|.+-|.....     .   ....+|+...  +.+.  ++.||.++|+.+.
T Consensus        13 ~~~~~~i~iRlPdG~r~~-r~F~~~dtl~~l~~fv~~~~~-----~---~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~   83 (96)
T d2cr5a1          13 AEEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKVGY-----H---KSLYRLSTSFPRRALEVEGGSSLEDIGITVD   83 (96)
T ss_dssp             CSSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHHTC-----C---TTTEEEECSSSCCBCCCCSSCBHHHHTCSSC
T ss_pred             CCCeEEEEEECCCCCEEE-EEECCcccHHHHHHHHHHhcc-----C---cccceeecCCCceecCccCCCcHHHCCCCCC
Confidence            456789999999999987 899999999999999987654     2   4566676443  5553  3688999999866


Q ss_pred             CCCCcceEEEEEe
Q 033923           79 ELPGTAITMHVVL   91 (108)
Q Consensus        79 ~~~~~~~tvhlv~   91 (108)
                      .      +++|--
T Consensus        84 ~------~L~v~~   90 (96)
T d2cr5a1          84 T------VLNVEE   90 (96)
T ss_dssp             E------EEEEEE
T ss_pred             C------EEEEec
Confidence            3      665543

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00012  Score=47.56  Aligned_cols=69  Identities=17%  Similarity=0.204  Sum_probs=53.2

Q ss_pred             CCCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE--EcCcccC---CCCcccccCCC
Q 033923            2 AGEDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI--HAGKILE---DNMTIAESRLP   76 (108)
Q Consensus         2 ~~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI--y~Gk~L~---D~~tL~~~~i~   76 (108)
                      ..++...|.||+.+|+.+. -.|..++||.+|.+.|.....     .   ....+|+  |--|.|.   .+.+|.+++|.
T Consensus        39 ~~~p~~~l~iRlPdG~r~~-r~F~~~~tl~~l~~~v~~~~~-----~---~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~  109 (124)
T d1wj4a_          39 VNGPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSKGY-----P---NERFELLTNFPRRKLSHLDYDITLQEAGLC  109 (124)
T ss_dssp             CSSCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHHHC-----C---TTTEEEECSSSCCEETSSCSSSCTTTTTCC
T ss_pred             CCCCceEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhccc-----C---CcceEEeecccccccccccccCcHHHcCCC
Confidence            4566789999999999998 999999999999999976532     2   3455554  3555663   36899999998


Q ss_pred             CCC
Q 033923           77 VVE   79 (108)
Q Consensus        77 ~~~   79 (108)
                      +..
T Consensus       110 P~~  112 (124)
T d1wj4a_         110 PQE  112 (124)
T ss_dssp             SSB
T ss_pred             CCC
Confidence            664

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.026  Score=33.55  Aligned_cols=70  Identities=16%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             EEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCcccCCCCcccccCCCCCCCCCcceEEE
Q 033923            9 LKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGKILEDNMTIAESRLPVVELPGTAITMH   88 (108)
Q Consensus         9 i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk~L~D~~tL~~~~i~~~~~~~~~~tvh   88 (108)
                      |.|...+|.... +.+.|++++.++-+..-++.+    +.   +++-.|-|.+|.|+=+.++.-.|++++.      .+-
T Consensus         3 V~Vl~~~~rR~~-VKvtP~t~l~~VL~eaC~k~~----~~---~~~~~Lkh~~k~ldLsl~~R~sgLpnna------kLE   68 (76)
T d2al3a1           3 VSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRRQD----FN---PSEYDLKFQRTVLDLSLQWRFANLPNNA------KLE   68 (76)
T ss_dssp             EEEECTTSCEEE-ECCCTTSBHHHHHHHHHHHTT----CC---GGGCEEEETTEEESSSCBHHHHCCCSSC------EEE
T ss_pred             EEEECCCCcEEE-EEeCCCcCHHHHHHHHHHHhC----CC---hhHceeeeCCEEcCccceeeecCCCCCC------EEE
Confidence            667788999888 999999999999999999999    55   7889999999999988999999999885      676


Q ss_pred             EEec
Q 033923           89 VVLR   92 (108)
Q Consensus        89 lv~~   92 (108)
                      |+-.
T Consensus        69 Lv~~   72 (76)
T d2al3a1          69 MVPV   72 (76)
T ss_dssp             EECS
T ss_pred             EEEc
Confidence            6644

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.02  E-value=0.12  Score=30.12  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             eEEEEEEeC------CCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCC----CCCCCceEEEEcCcccCCCCcccccCC
Q 033923            6 LIELKFRLA------DGADIGPSKFSPTTTVASLKEKIISRWPKEKENG----PKTVNNVQLIHAGKILEDNMTIAESRL   75 (108)
Q Consensus         6 ~i~i~~r~~------~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~----p~~~~~qRLIy~Gk~L~D~~tL~~~~i   75 (108)
                      ++.|+|++-      .|+....++++...||++|.+.|..+++.-...-    -......++.-+|+...++..     +
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d~~-----L   75 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEE-----L   75 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCB-----C
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCCcC-----c
Confidence            367777774      3544334899999999999999999886311000    000356778788888766544     5


Q ss_pred             CCCC
Q 033923           76 PVVE   79 (108)
Q Consensus        76 ~~~~   79 (108)
                      .+|+
T Consensus        76 ~~gD   79 (88)
T d1vjka_          76 KDGD   79 (88)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            5665

>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.35  E-value=0.018  Score=31.67  Aligned_cols=34  Identities=26%  Similarity=0.482  Sum_probs=10.4

Q ss_pred             CCceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHH
Q 033923            3 GEDLIELKFRLADGADIGPSKFSPTTTVASLKEKI   37 (108)
Q Consensus         3 ~~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I   37 (108)
                      ..++..|.||+.+|..+. -.|..+-||++|++-|
T Consensus        16 s~PtT~iQiRL~dG~R~v-~rFN~~Htv~dir~fI   49 (50)
T d1s3si_          16 AEPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFI   49 (50)
T ss_dssp             -----------------------CCCCHHHHHHHC
T ss_pred             CCCceEEEEEeCCCCEEE-EEccCccCHHHHHHhh
Confidence            456778999999999987 9999999999998754

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.02  E-value=0.29  Score=28.92  Aligned_cols=45  Identities=27%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             ceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923            5 DLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA   60 (108)
Q Consensus         5 ~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~   60 (108)
                      ..+.||+  .-+.++..+.++++.+..+|+++|..+..         ...++|-|.
T Consensus        11 ~~ikVKv--~~~~D~~~~~l~~~it~~dL~~kI~~rf~---------~~~~~lkY~   55 (85)
T d1ip9a_          11 KTTKIKF--YYKDDIFALMLKGDTTYKELRSKIAPRID---------TDNFKLQTK   55 (85)
T ss_dssp             CCEEEEE--CBTTCCEEEEECSCCCHHHHHHHHHHHHT---------SSCEEEEEC
T ss_pred             CCEEEEE--EECCcEEEEEeCCCCCHHHHHHHHHHHhC---------CCceEEEEE
Confidence            3445554  43333334999999999999999999876         456777664

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=1.7  Score=25.29  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=54.7

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcCc-----ccCCCCcccccCCCCCCC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAGK-----ILEDNMTIAESRLPVVEL   80 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~Gk-----~L~D~~tL~~~~i~~~~~   80 (108)
                      +++++|.++|+ +++ +.+++..+..+|=+.+.+..+    +.  ..+..=|-|..+     .|+.++.|....+..+. 
T Consensus         1 t~~v~V~~LD~-~~~-~~v~~~a~G~~l~~~Vc~~l~----L~--E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~-   71 (84)
T d1ef1a3           1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKTIG----LR--EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES-   71 (84)
T ss_dssp             CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCS-
T ss_pred             CEEEEEEEcCC-EEE-EEEcCCChHHHHHHHHHHHcC----Cc--ccccceEEEECCCCCeEeccCCCchhhhccCCCC-
Confidence            47899999998 587 999999999999999999888    42  155666655532     46777777776444332 


Q ss_pred             CCcceEEEEEec
Q 033923           81 PGTAITMHVVLR   92 (108)
Q Consensus        81 ~~~~~tvhlv~~   92 (108)
                         +.++++.++
T Consensus        72 ---~~~l~F~VK   80 (84)
T d1ef1a3          72 ---PLLFKFRAK   80 (84)
T ss_dssp             ---SEEEEEEES
T ss_pred             ---CEEEEEEEE
Confidence               567777665

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.04  E-value=2.3  Score=24.71  Aligned_cols=75  Identities=8%  Similarity=0.025  Sum_probs=52.5

Q ss_pred             eEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEcC--c--ccCCCCcccccCCCCCCCC
Q 033923            6 LIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHAG--K--ILEDNMTIAESRLPVVELP   81 (108)
Q Consensus         6 ~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~G--k--~L~D~~tL~~~~i~~~~~~   81 (108)
                      ++.++|.+.|+ +++ +.+++..+-.+|=+++.+..+    +.  ..+..=|-|..  .  .|+.++.|....+..+   
T Consensus         2 ~~~v~V~lLD~-~le-~~v~~~a~G~~L~d~Vc~~L~----L~--E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~---   70 (84)
T d1h4ra3           2 TFTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRTLG----LR--ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKE---   70 (84)
T ss_dssp             EEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHT----CC--CGGGEEEEEEETTEEEECCTTSBGGGSSCCCS---
T ss_pred             eEEEEEEEcCC-cEE-EEEcCCChHHHHHHHHHHHcC----Cc--ccccceEEEecCCceEEccCCCchhhhccCCC---
Confidence            67899999998 477 999999999999999999887    42  14444444433  2  5566677776644433   


Q ss_pred             CcceEEEEEec
Q 033923           82 GTAITMHVVLR   92 (108)
Q Consensus        82 ~~~~tvhlv~~   92 (108)
                       .+.++++.++
T Consensus        71 -~~~~~~F~VK   80 (84)
T d1h4ra3          71 -EPVTFHFLAK   80 (84)
T ss_dssp             -SSEEEEEEES
T ss_pred             -CCEEEEEEEE
Confidence             2566777665

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.59  E-value=1.3  Score=26.49  Aligned_cols=66  Identities=20%  Similarity=0.132  Sum_probs=45.1

Q ss_pred             CceEEEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc-C--cccCCCCccccc
Q 033923            4 EDLIELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA-G--KILEDNMTIAES   73 (108)
Q Consensus         4 ~~~i~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~-G--k~L~D~~tL~~~   73 (108)
                      ....-|+|=+.+|.+.. +.|++++|+.+|=+.+.++.+..  .. +...-.--+-. |  |.|+|.+.+-+.
T Consensus         7 ~~~~vvkv~~~dg~~k~-l~V~~~tTa~eV~~~l~~K~~~~--~~-~~f~L~E~~~~~~leR~L~d~E~vl~v   75 (100)
T d1wgra_           7 GRPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQRAHAL--SD-ETWGLVECHPHLALERGLEDHESVVEV   75 (100)
T ss_dssp             CSCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCSSSCC--CC-CCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred             CCceEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHHhCCC--CC-CCeEEEEecCCCcceeecCchHhHHHH
Confidence            45567888889999888 99999999999999999887731  11 11222222211 3  788887765554

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=1.6  Score=25.71  Aligned_cols=43  Identities=12%  Similarity=0.155  Sum_probs=36.4

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEEEc
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLIHA   60 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLIy~   60 (108)
                      .|+|+..  .|+. +++.+..+.++|.++|+++.+    .+   ++..+|-|+
T Consensus         7 ~vkVh~~--fTVa-l~v~~G~~y~~L~~lvs~KL~----l~---~~~~~LSY~   49 (82)
T d1oeya_           7 TLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKLE----LR---LEHTKLSYR   49 (82)
T ss_dssp             EEEEESS--SEEE-EEECTTCCHHHHHHHHHHHTT----CC---GGGCCEEEC
T ss_pred             EEEEEEE--EEEE-EEccCCCCHHHHHHHHHHHhC----CC---hhheEEEec
Confidence            4555553  6776 999999999999999999998    67   899999996

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.26  E-value=3.6  Score=23.50  Aligned_cols=43  Identities=9%  Similarity=-0.009  Sum_probs=35.9

Q ss_pred             EEEEEeCCCCeeeeeEeCCcchHHHHHHHHHhhCCCCCcCCCCCCCceEEE
Q 033923            8 ELKFRLADGADIGPSKFSPTTTVASLKEKIISRWPKEKENGPKTVNNVQLI   58 (108)
Q Consensus         8 ~i~~r~~~g~~~~~l~v~~~~TV~~LK~~I~~~~~~~~~i~p~~~~~qRLI   58 (108)
                      .|++-+++|+... +.+.|..||.++-.++.++.+    +.   ++...++
T Consensus         2 ~iRv~LPngq~T~-V~vrpG~tir~~L~k~l~kRg----l~---~~~~~V~   44 (73)
T d1wxma1           2 TVKVYLPNKQRTV-VTVRDGMSVYDSLDKALKVRG----LN---QDCCVVY   44 (73)
T ss_dssp             EEEEECSSSCEEE-EECCSSCBSHHHHHHHHHTTT----CC---SSSEEEE
T ss_pred             eEEEEcCCCCeEE-EEecCCCCHHHHHHHHHHHcC----CC---HHHEEEE
Confidence            3667779999876 999999999999999999999    77   5666653