Citrus Sinensis ID: 033924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGGGGGKR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccHHHHHHHHHHHHccccccccEHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MYRKQHKKDIAAEAVKKKrrstkkpysrsiVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTsksktqskgsmpkgaapkgpklgggggkr
Flexible Loop (DISEMBL)
myrkqhkkdiaaeavkkkrrstkkpysrsivgatleviqkrrtekpevrdaaREAALREIKerikktkdekrakkaevtsksktqskgsmpkgaapkgpklgggggkr
Low Complexity Region (SEG)
MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIkktkdekrakkaeVTSKSKTQSkgsmpkgaapkgpklgggggkR
Disordered region (IsUnstruct)
************************************************************************************************************
Disordered Region (DISOPRED)
*Y*************************RSIVGATLEVIQK********************************************************************
Disordered Region (DISEMBL)
***************************RSIVGATLEVIQKR***********REAALREIKERIK*******************************************
Disordered Region (DISPRO)
MY*****K**AAEAVKKKR**T*KPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKK*********************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAxxxxxxxxxxxxxxxxxxxxxVTSKSKTQSKGSMPKGAAPKGPKLGGGGGKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q9FUL4	186	60S ribosomal protein L24	N/A	no	0.953	0.553	0.875	8e-36
Q42347	164	60S ribosomal protein L24	yes	no	0.935	0.615	0.794	3e-31
O65743	164	60S ribosomal protein L24	N/A	no	0.870	0.573	0.842	6e-29
P38666	163	60S ribosomal protein L24	no	no	0.870	0.576	0.789	9e-28
P50888	162	60S ribosomal protein L24	N/A	no	0.787	0.524	0.870	8e-27
Q7SDU2	156	60S ribosomal protein L24	N/A	no	0.620	0.429	0.514	1e-09
Q6BNC2	156	60S ribosomal protein L24	yes	no	0.5	0.346	0.509	3e-07
Q6FXY9	155	60S ribosomal protein L24	yes	no	0.481	0.335	0.547	6e-07
P38665	155	60S ribosomal protein L24	yes	no	0.870	0.606	0.4	6e-07
Q9VJY6	155	60S ribosomal protein L24	yes	no	0.574	0.4	0.476	1e-06

>sp|Q9FUL4|RL24_PRUAV 60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1

 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 96/104 (92%), Gaps = 1/104 (0%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAA-PKGPKLGG 103
           KERIKKTKDEK+AKKAEVT   K+Q KGS+ KG A PKGPKLGG
Sbjct: 116 KERIKKTKDEKKAKKAEVTKSQKSQGKGSIAKGGAQPKGPKLGG 159

Prunus avium (taxid: 42229)

>sp|Q42347|RL241_ARATH 60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSK-SKTQSKGSMPKGAAPKGPKL 101
           KERIKKTKDEK+AKK E  SK  K+Q KG++PK AAPK  K+
Sbjct: 116 KERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKM 157

Might have an extraribosomal function in reinitiation of translation.

Arabidopsis thaliana (taxid: 3702)

>sp|O65743|RL24_CICAR 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 89/95 (93%), Gaps = 1/95 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           M+RKQHKKD A EAVKK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREI
Sbjct: 56  MFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKS-KTQSKGSMPKGA 94
           KERIKKTKDEK+AKKAEV SK+ K+Q KG++ KGA
Sbjct: 116 KERIKKTKDEKKAKKAEVASKAQKSQGKGNVQKGA 150

Cicer arietinum (taxid: 3827)

>sp|P38666|RL242_ARATH 60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 83/95 (87%), Gaps = 1/95 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAA 95
           KERIKKTKDEK+AKK E  SK + + K + PK AA
Sbjct: 116 KERIKKTKDEKKAKKVEFASKQQ-KVKANFPKAAA 149

Might have an extraribosomal function in reinitiation of translation of ETTIN and MONOPTEROS genes that are involved in the auxin-mediated gynoecium patterning.

Arabidopsis thaliana (taxid: 3702)

>sp|P50888|RL24_HORVU 60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/85 (87%), Positives = 79/85 (92%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQ 85
           KERIKKTKDEK+AKKAEVT   K+Q
Sbjct: 116 KERIKKTKDEKKAKKAEVTKSQKSQ 140

Hordeum vulgare (taxid: 4513)

>sp|Q7SDU2|RL24_NEUCR 60S ribosomal protein L24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-24 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR AA++E 
Sbjct: 54  LYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAARLAAIKES 112

Query: 61  KERIKKTK 68
           K + ++T+
Sbjct: 113 KAKKQETQ 120

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6BNC2|RL24_DEBHA 60S ribosomal protein L24 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RPL24 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREA 55
           +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+ 
Sbjct: 54  LYRRQHKKGISEESAKRRTRKTVKN-QRAIVGASLELIKERRSQKPSDRKAARDV 107

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6FXY9|RL24_CANGA 60S ribosomal protein L24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL24 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 53
           +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R
Sbjct: 54  LYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKR 105

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|P38665|RL24_KLULA 60S ribosomal protein L24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPL24 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 6/100 (6%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R+   +  
Sbjct: 54  LYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRDEKKKAD 112

Query: 61  KERIKKTKDEKRAKKAEVTSK-----SKTQSKGSMPKGAA 95
           KE+ K  K  ++++KA++ +      SK Q+KG+  K AA
Sbjct: 113 KEKKKADKAARKSEKAKLAAAQGSKVSKQQAKGAFQKVAA 152

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24 OS=Drosophila melanogaster GN=RpL24 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           +YR++H+K I  EA KK+ R T+K + R+IVGA+L  I  +R  KPEVR A R+ A++  
Sbjct: 54  LYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVA 112

Query: 61  KER 63
           KE+
Sbjct: 113 KEQ 115

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
224084006	155	predicted protein [Populus trichocarpa]	0.953	0.664	0.893	2e-43
224122388	163	predicted protein [Populus trichocarpa]	0.879	0.582	0.884	2e-38
357124341	161	PREDICTED: 60S ribosomal protein L24-lik	0.981	0.658	0.805	6e-38
52783264	186	RecName: Full=60S ribosomal protein L24	0.953	0.553	0.875	3e-34
388512319	162	unknown [Lotus japonicus]	0.814	0.543	0.876	2e-33
343172474	163	60S ribosomal protein L24-1, partial [Si	0.759	0.503	0.890	4e-32
224134781	163	predicted protein [Populus trichocarpa]	0.879	0.582	0.863	8e-31
224077342	163	predicted protein [Populus trichocarpa]	0.879	0.582	0.873	1e-30
297741090	198	unnamed protein product [Vitis vinifera]	0.870	0.474	0.906	2e-30
359490349	163	PREDICTED: 60S ribosomal protein L24 [Vi	0.870	0.576	0.906	5e-30

>gi|224084006|ref|XP_002335364.1| predicted protein [Populus trichocarpa] gi|222833671|gb|EEE72148.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/103 (89%), Positives = 99/103 (96%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIAAE +KK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREI
Sbjct: 53  MYRKQHKKDIAAETIKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 112

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGG 103
           KERIKKTKDEKRAKKAEVT+K +  SKGS+PKGAAPKGPKLGG
Sbjct: 113 KERIKKTKDEKRAKKAEVTAKVQKSSKGSVPKGAAPKGPKLGG 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122388|ref|XP_002318822.1| predicted protein [Populus trichocarpa] gi|224147380|ref|XP_002336467.1| predicted protein [Populus trichocarpa] gi|118481582|gb|ABK92733.1| unknown [Populus trichocarpa] gi|222835080|gb|EEE73529.1| predicted protein [Populus trichocarpa] gi|222859495|gb|EEE97042.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/95 (88%), Positives = 91/95 (95%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIAAE +KK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIAAETIKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAA 95
           KERIKKTKDEKRAKKAEVT+K +  SKGS+PKGAA
Sbjct: 116 KERIKKTKDEKRAKKAEVTAKVQKSSKGSVPKGAA 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357124341|ref|XP_003563859.1| PREDICTED: 60S ribosomal protein L24-like [Brachypodium distachyon]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 93/108 (86%), Gaps = 2/108 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGA+L+VIQK+R EKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGASLDVIQKKRAEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGGGGGKR 108
           KERIKKTKDEKRAKK EVT   KT  KG+ PK    K PKLGGGGGKR
Sbjct: 116 KERIKKTKDEKRAKKVEVTKSHKTAGKGNAPKPG--KAPKLGGGGGKR 161

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52783264|sp|Q9FUL4.1|RL24_PRUAV RecName: Full=60S ribosomal protein L24 gi|10180025|gb|AAG13986.1|AF298827_1 60S ribosomal protein L24 [Prunus avium]

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 96/104 (92%), Gaps = 1/104 (0%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAA-PKGPKLGG 103
           KERIKKTKDEK+AKKAEVT   K+Q KGS+ KG A PKGPKLGG
Sbjct: 116 KERIKKTKDEKKAKKAEVTKSQKSQGKGSIAKGGAQPKGPKLGG 159

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512319|gb|AFK44221.1| unknown [Lotus japonicus]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 84/89 (94%), Gaps = 1/89 (1%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           M+RKQHKKDIA EA +KKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI
Sbjct: 56  MFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKS-KTQSKG 88
           KER+KKTKDEKRAKKAEV +K+ K+Q KG
Sbjct: 116 KERVKKTKDEKRAKKAEVQTKAQKSQGKG 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172474|gb|AEL98941.1| 60S ribosomal protein L24-1, partial [Silene latifolia] gi|343172476|gb|AEL98942.1| 60S ribosomal protein L24-1, partial [Silene latifolia]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/82 (89%), Positives = 80/82 (97%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           +YRKQHKKDI+AEAVKK+RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct: 56  VYRKQHKKDISAEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKS 82
           KERIKKTKDEKRAKKAEV +K+
Sbjct: 116 KERIKKTKDEKRAKKAEVMAKT 137

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134781|ref|XP_002321904.1| predicted protein [Populus trichocarpa] gi|222868900|gb|EEF06031.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/95 (86%), Positives = 91/95 (95%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIAAE +KK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIAAETIKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAA 95
           KERIKKTKDEK+AKKAEV +K++  SKGS+PKGAA
Sbjct: 116 KERIKKTKDEKKAKKAEVMAKAQKSSKGSLPKGAA 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077342|ref|XP_002305219.1| predicted protein [Populus trichocarpa] gi|118487980|gb|ABK95811.1| unknown [Populus trichocarpa] gi|222848183|gb|EEE85730.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/95 (87%), Positives = 90/95 (94%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIAAE VKK+RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIAAETVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAA 95
           KERIKKTKDEK+AKKAEV SK++  SKGS+PKGAA
Sbjct: 116 KERIKKTKDEKKAKKAEVMSKAQKSSKGSLPKGAA 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741090|emb|CBI31821.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/96 (90%), Positives = 92/96 (95%), Gaps = 2/96 (2%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIAAEAVKKKRR+ KKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI
Sbjct: 91  MYRKQHKKDIAAEAVKKKRRTAKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 150

Query: 61  KERIKKTKDEKRAKKAEVTSKS-KTQSKGSMPKGAA 95
           KERIKKTKDEK+AKKAEV +K+ KTQSKG +PKGAA
Sbjct: 151 KERIKKTKDEKKAKKAEVMAKTQKTQSKG-VPKGAA 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490349|ref|XP_002279048.2| PREDICTED: 60S ribosomal protein L24 [Vitis vinifera]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/96 (90%), Positives = 92/96 (95%), Gaps = 2/96 (2%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDIAAEAVKKKRR+ KKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIAAEAVKKKRRTAKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 115

Query: 61  KERIKKTKDEKRAKKAEVTSKS-KTQSKGSMPKGAA 95
           KERIKKTKDEK+AKKAEV +K+ KTQSKG +PKGAA
Sbjct: 116 KERIKKTKDEKKAKKAEVMAKTQKTQSKG-VPKGAA 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2040555	164	RPL24A "ribosomal protein L24"	0.592	0.390	0.890	4.6e-25
TAIR|locus:2085246	163	STV1 "SHORT VALVE1" [Arabidops	0.592	0.392	0.890	4.6e-25
ASPGD|ASPL0000074183	160	AN8704 [Emericella nidulans (t	0.574	0.387	0.492	6.4e-12
POMBASE|SPAC6G9.09c	149	rpl2401 "60S ribosomal protein	0.574	0.416	0.507	1e-11
POMBASE|SPCC330.14c	149	rpl2402 "60S ribosomal protein	0.574	0.416	0.507	1e-11
DICTYBASE|DDB_G0280229	127	rpl24 "S60 ribosomal protein L	0.574	0.488	0.539	1.7e-11
CGD|CAF0006998	155	RPL24A [Candida albicans (taxi	0.564	0.393	0.516	2.2e-11
SGD|S000002999	155	RPL24A "Ribosomal 60S subunit	0.574	0.4	0.492	5.2e-10
SGD|S000003380	155	RPL24B "Ribosomal 60S subunit	0.574	0.4	0.492	5.2e-10
FB|FBgn0032518	155	RpL24 "Ribosomal protein L24"	0.574	0.4	0.476	6.6e-10

TAIR|locus:2040555 RPL24A "ribosomal protein L24" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct:    56 MYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

Query:    61 KERI 64
             KERI
Sbjct:   116 KERI 119

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2085246 STV1 "SHORT VALVE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/64 (89%), Positives = 61/64 (95%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct:    56 MYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115

Query:    61 KERI 64
             KERI
Sbjct:   116 KERI 119

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

ASPGD|ASPL0000074183 AN8704 [Emericella nidulans (taxid:162425)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 31/63 (49%), Positives = 48/63 (76%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             +YR+QHKK I+ E  KK+ R   K   R+IVGA+L+VI++RR+++PE R AAR+ A+++ 
Sbjct:    54 LYRRQHKKGISEEVAKKRTRRVVKS-QRAIVGASLDVIKERRSQRPEARAAARQQAIKDA 112

Query:    61 KER 63
             KE+
Sbjct:   113 KEK 115

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

POMBASE|SPAC6G9.09c rpl2401 "60S ribosomal protein L24 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 32/63 (50%), Positives = 47/63 (74%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ 
Sbjct:    54 LYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQR 112

Query:    61 KER 63
             K++
Sbjct:   113 KDK 115

GO:0002181 "cytoplasmic translation" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

POMBASE|SPCC330.14c rpl2402 "60S ribosomal protein L24 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 32/63 (50%), Positives = 47/63 (74%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ 
Sbjct:    54 LYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQR 112

Query:    61 KER 63
             K++
Sbjct:   113 KDK 115

GO:0002181 "cytoplasmic translation" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

DICTYBASE|DDB_G0280229 rpl24 "S60 ribosomal protein L24" [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/63 (53%), Positives = 45/63 (71%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++R +KPEV+ AA E A REI
Sbjct:    54 VYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREI 112

Query:    61 KER 63
             KE+
Sbjct:   113 KEK 115

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAF0006998 RPL24A [Candida albicans (taxid:5476)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/62 (51%), Positives = 47/62 (75%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             +YR+ HKK I+ EA KK+ R T K + R+IVGA+LE+I++RR++KP  R AAR++ L + 
Sbjct:    54 LYRRHHKKGISEEAAKKRTRKTVK-HQRAIVGASLELIKERRSQKPSDRKAARDSKLAKD 112

Query:    61 KE 62
             KE
Sbjct:   113 KE 114

GO:0005829 "cytosol" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

SGD|S000002999 RPL24A "Ribosomal 60S subunit protein L24A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 31/63 (49%), Positives = 42/63 (66%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  
Sbjct:    54 LFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKAN 112

Query:    61 KER 63
             KE+
Sbjct:   113 KEK 115

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

SGD|S000003380 RPL24B "Ribosomal 60S subunit protein L24B" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 31/63 (49%), Positives = 42/63 (66%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  
Sbjct:    54 LFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKAN 112

Query:    61 KER 63
             KE+
Sbjct:   113 KEK 115

GO:0005737 "cytoplasm" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0005840 "ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

FB|FBgn0032518 RpL24 "Ribosomal protein L24" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query:     1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             +YR++H+K I  EA KK+ R T+K + R+IVGA+L  I  +R  KPEVR A R+ A++  
Sbjct:    54 LYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVA 112

Query:    61 KER 63
             KE+
Sbjct:   113 KEQ 115

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0005840 "ribosome" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42347	RL241_ARATH	No assigned EC number	0.7941	0.9351	0.6158	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.2940.6.1	annotation not avaliable (155 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VIII0532	SubName- Full=Putative uncharacterized protein; (112 aa)			•	•					0.474
	estExt_fgenesh4_pm.C_LG_X0765	SubName- Full=Putative uncharacterized protein; (113 aa)			•	•					0.455
	estExt_fgenesh4_kg.C_LG_VIII0028	SubName- Full=Putative uncharacterized protein; (113 aa)			•	•					0.452
	estExt_Genewise1_v1.C_LG_X2037	hypothetical protein (112 aa)			•	•					0.449
	eugene3.00150266	hypothetical protein (316 aa)			•						0.426
	gw1.155.177.1	hypothetical protein (132 aa)			•						0.423
	eugene3.53030001	hypothetical protein (183 aa)			•						0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG1722	155	consensus 60s ribosomal protein L24 [Translation,	99.97
PTZ00033	125	60S ribosomal protein L24; Provisional	99.87

>KOG1722 consensus 60s ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.3e-32  Score=206.17  Aligned_cols=102  Identities=51%  Similarity=0.730  Sum_probs=92.4

Q ss_pred             ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhh
Q 033924            1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTS   80 (108)
Q Consensus         1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk~~kKa~ka~~~~   80 (108)
                      |||++|+||++||++++|+|++++.|||+|||+|||+|+++|||+||||+|+||++|+++||++++.++++++.+++.++
T Consensus        54 LyR~khkKg~~ee~~kkrtrrt~k~~qRaI~GasL~~I~~KRn~kpevR~a~Re~alK~aKe~~ka~k~ak~A~K~~~as  133 (155)
T KOG1722|consen   54 LYRKKHKKGIQEEAAKKRTRRTVKKFQRAIVGASLDVILEKRNQKPEVRKAAREAALKKAKEKKKATKAAKKAKKAKSAS  133 (155)
T ss_pred             HHHHHhhcchhHHHHHHHhhhhhhhhhhhhccccHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            79999999999999999999999889999999999999999999999999999999999999999999999876666555


Q ss_pred             hhhhccCCCCCCCCCCCCCccCCCC
Q 033924           81 KSKTQSKGSMPKGAAPKGPKLGGGG  105 (108)
Q Consensus        81 ~~k~~~k~~~~k~~~~~~p~~gg~~  105 (108)
                      ..   .++.+.+++.+++|+|||+.
T Consensus       134 ~~---k~qk~~k~~k~aaprVggkr  155 (155)
T KOG1722|consen  134 AP---KKQKAKKNAKVAAPRVGGKR  155 (155)
T ss_pred             cc---cccchhhhhhhhcccccCCC
Confidence            32   22778889999999999874

>PTZ00033 60S ribosomal protein L24; Provisional

Probab=99.87  E-value=5.3e-23  Score=150.71  Aligned_cols=67  Identities=30%  Similarity=0.400  Sum_probs=63.3

Q ss_pred             ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhH
Q 033924            1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK   68 (108)
Q Consensus         1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk   68 (108)
                      +|||+|+||++||+.++|+++++ ++||+|||+|||+|+++|||+||||.|++++||+++||++++.+
T Consensus        58 ~yRr~~kK~~~e~~~kkR~~rtv-K~qRaivg~sLe~I~~kR~~k~evr~aar~~a~r~~Ke~~~~~k  124 (125)
T PTZ00033         58 TYRRINRKTTTDRVQRRRAARTV-KVQRAIVGADLSYIQEVRAYVQKVDRSAKAKAVRAEKAERKAAK  124 (125)
T ss_pred             HHHHHhCCcchhHHHHHHhcCCc-cchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            59999999999999999999998 69999999999999999999999999999999999999988653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	108
3izr_Z	162	Localization Of The Large Subunit Ribosomal Protein		1e-27
3izs_Z	155	Localization Of The Large Subunit Ribosomal Protein		7e-07
2zkr_u	157	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-06

>pdb|3IZR|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 162

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 63/64 (98%)
Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           MYRKQHKKDI AEAVKK+RR+TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREI
Sbjct: 56  MYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREI 115
Query: 61  KERI 64
           KERI
Sbjct: 116 KERI 119

>pdb|3IZS|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 155

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 53
           ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A R
Sbjct: 54  LFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANR 105

>pdb|2ZKR|UU Chain u, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 1   MYRKQHKKDIAAEAVKKK-RRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALR 58
           +YR++HKK  + E  KK+ RR+ K  + R+I GA+L  I  +R +KPEVR A RE A+R
Sbjct: 54  LYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	3e-08
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	2e-07
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	2e-05
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	6e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 157

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
           +YR++HKK  + E  KK+ R   K + R+I GA+L  I  +R +KPEVR A RE A+R  
Sbjct: 54  LYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAA 112

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGG 103
           KE  K  +  K+   A   + +K   K  + K      P++GG
Sbjct: 113 KEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGG 155

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T Length = 158

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 1   MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 60
             R+  KK  A +  +KK++      +R+IVG +LE I +R+      + A  E A+RE+
Sbjct: 56  ARRRLWKKVKATDIAQKKKKRNVT-VARAIVGISLEEINRRKNLDASHKKAEAEKAVREL 114

Query: 61  KERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGG 103
           K++     ++KRA +       K   K    K   P G K G 
Sbjct: 115 KQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 36  EVIQKRRTEKP---EVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSK 87
           E I+K R E+    +  DAA +   +E +E+ KK  +E   +++E   K+K  ++
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	99.95
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	99.94
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	99.92
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	99.88

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.94  E-value=1.6e-28  Score=184.12  Aligned_cols=103  Identities=36%  Similarity=0.565  Sum_probs=2.6

Q ss_pred             ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhh
Q 033924            1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTS   80 (108)
Q Consensus         1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk~~kKa~ka~~~~   80 (108)
                      +||++|+||+++|+.++|+++++ +|||+|||+|||+|+++|||+||||.|+||+||+++||+++++++.++++++...+
T Consensus        54 ~yRr~~kK~~~~e~~KkR~r~~v-K~~R~ivg~sl~~I~~kR~qkpevr~a~r~~ai~~~Ke~kk~~~~~kk~~~~~~~~  132 (157)
T 2zkr_u           54 LYRRKHKKGQSEEIQKKRTRRAV-KFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKA  132 (157)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             HHHHHhcchHHHHHHHHHhcCcc-ceeHHHHHhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            69999999999999999999998 69999999999999999999999999999999999999999999999987654444


Q ss_pred             hhhhccCCCCCCCCCCCCCccCCC
Q 033924           81 KSKTQSKGSMPKGAAPKGPKLGGG  104 (108)
Q Consensus        81 ~~k~~~k~~~~k~~~~~~p~~gg~  104 (108)
                      ..+..+++..+++....+|+|||+
T Consensus       133 ~~~~~~~~k~~k~~~k~a~~v~g~  156 (157)
T 2zkr_u          133 PTKAAPKQKIVKPVKVSAPRVGGK  156 (157)
T ss_dssp             ------------------------
T ss_pred             ccccchhhhccccccccCCCCCCC
Confidence            334455566677777788999975

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T

Probab=99.92  E-value=2.8e-27  Score=177.59  Aligned_cols=94  Identities=26%  Similarity=0.345  Sum_probs=6.4

Q ss_pred             ChhhcccchHHHHHHHhhhhccCCCcccCccccCHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhh
Q 033924            1 MYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTS   80 (108)
Q Consensus         1 lyRR~hKKg~~ee~~kKr~rk~~k~~qRaIvGaSLe~I~~kRnqkpevR~A~Re~AireaKekkkakk~~kKa~ka~~~~   80 (108)
                      +||++|+||+++|++++|+++++ +|||+|||+|||+|+++|||+||||.|+||+||+++||+++++++.++++++..++
T Consensus        56 ~yRr~~kK~~~~e~~kkr~~r~v-K~~R~ivg~sl~~I~~kR~qkpe~r~a~re~ai~~~Kekkka~~~~kka~~a~~~~  134 (158)
T 4a17_T           56 ARRRLWKKVKATDIAQKKKKRNV-TVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGK  134 (158)
T ss_dssp             HHHHHHC-------------------------------------------------------------------------
T ss_pred             HHHHHhCCcchHHHHHHHhcCCc-ccchhhhhhhHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            59999999999999999999998 79999999999999999999999999999999999999999999999998876654


Q ss_pred             hh------hhccCCCCCCCCC
Q 033924           81 KS------KTQSKGSMPKGAA   95 (108)
Q Consensus        81 ~~------k~~~k~~~~k~~~   95 (108)
                      .+      +++++|.+++|.+
T Consensus       135 ~~~~~~~~k~~~kg~~~k~~~  155 (158)
T 4a17_T          135 DVKAAKKAETKKTKQPVGAKG  155 (158)
T ss_dssp             ---------------------
T ss_pred             cchhhhHhhhhcccccccccc
Confidence            32      6788888888754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00