Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 106
PRK03381 774
PRK03381, PRK03381, PII uridylyl-transferase; Prov
3e-04 TIGR03571 298
TIGR03571, lucif_BA3436, luciferase-type oxidoredu
0.001 TIGR01693 850
TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans
0.003
>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional
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Score = 38.0 bits (89), Expect = 3e-04
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 21 RASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGL 80
R ++A AV P+V+ + PDAT++E+ DR G L AL+ G+
Sbjct: 679 REAAAAAVPVRR-----PAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGV 733
Query: 81 NVVKANV 87
+V A V
Sbjct: 734 DVRWARV 740
>gnl|CDD|234266 TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family
Back Show alignment and domain information
Score = 36.1 bits (84), Expect = 0.001
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 46 IDLDSDPDATIVEITFGDRLG--ALLDTMNALKNLGLNVV 83
+DL DPD I G R G AL++ ++AL+ G+N V
Sbjct: 233 LDLSEDPDEPPTPIRLGYRTGRNALIELLDALREAGVNHV 272
This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81 [Unknown function, Enzymes of unknown specificity]. Length = 298
>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase
Back Show alignment and domain information
Score = 35.5 bits (82), Expect = 0.003
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 14 SATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMN 73
SA R R AV P+V I + ATI+E+ DR G L
Sbjct: 751 SARRARRRRLQHFAV------------PPRVTILNTASRKATIMEVRALDRPGLLARVGR 798
Query: 74 ALKNLGLNVVKANV 87
L+ LGL++ A +
Sbjct: 799 TLEELGLSIQSAKI 812
This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
106
cd04895 72
ACT_ACR_1 ACT domain-containing protein which is c
99.9 cd04897 75
ACT_ACR_3 ACT domain-containing protein which is c
99.88 PRK01759 854
glnD PII uridylyl-transferase; Provisional
99.83 PRK05007 884
PII uridylyl-transferase; Provisional
99.83 cd04896 75
ACT_ACR-like_3 ACT domain-containing protein which
99.82 COG2844 867
GlnD UTP:GlnB (protein PII) uridylyltransferase [P
99.71 TIGR01693 850
UTase_glnD [Protein-PII] uridylyltransferase. This
99.69 PRK04374 869
PII uridylyl-transferase; Provisional
99.69 PRK00275 895
glnD PII uridylyl-transferase; Provisional
99.66 cd04925 74
ACT_ACR_2 ACT domain-containing protein which is c
99.64 PRK03381 774
PII uridylyl-transferase; Provisional
99.63 cd04927 76
ACT_ACR-like_2 Second ACT domain, of a novel type
99.63 PRK05092 931
PII uridylyl-transferase; Provisional
99.62 cd04900 73
ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,
99.6 PRK03059 856
PII uridylyl-transferase; Provisional
99.6 TIGR01693 850
UTase_glnD [Protein-PII] uridylyltransferase. This
99.41 PRK01759 854
glnD PII uridylyl-transferase; Provisional
99.41 cd04926 72
ACT_ACR_4 C-terminal ACT domain, of a novel type o
99.36 PRK05007 884
PII uridylyl-transferase; Provisional
99.34 cd04899 70
ACT_ACR-UUR-like_2 C-terminal ACT domains of the b
99.29 PRK05092 931
PII uridylyl-transferase; Provisional
99.02 cd04928 68
ACT_TyrKc Uncharacterized, N-terminal ACT domain o
98.97 cd04873 70
ACT_UUR-ACR-like ACT domains of the bacterial sign
98.95 PRK00275 895
glnD PII uridylyl-transferase; Provisional
98.87 PRK03381 774
PII uridylyl-transferase; Provisional
98.85 PF01842 66
ACT: ACT domain; InterPro: IPR002912 The ACT domai
98.78 PRK03059 856
PII uridylyl-transferase; Provisional
98.6 PRK04374 869
PII uridylyl-transferase; Provisional
98.46 PRK00227 693
glnD PII uridylyl-transferase; Provisional
98.4 PF13740 76
ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
98.27 cd04870 75
ACT_PSP_1 CT domains found N-terminal of phosphose
98.14 cd04894 69
ACT_ACR-like_1 ACT domain-containing protein which
98.06 cd04875 74
ACT_F4HF-DF N-terminal ACT domain of formyltetrahy
98.05 cd04893 77
ACT_GcvR_1 ACT domains that comprise the Glycine C
97.94 cd04869 81
ACT_GcvR_2 ACT domains that comprise the Glycine C
97.93 PF13291 80
ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
97.86 cd04872 88
ACT_1ZPV ACT domain proteins similar to the yet un
97.7 PRK00194 90
hypothetical protein; Validated
97.69 cd04877 74
ACT_TyrR N-terminal ACT domain of the TyrR protein
97.64 cd04887 74
ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te
97.6 COG2844 867
GlnD UTP:GlnB (protein PII) uridylyltransferase [P
97.53 cd04878 72
ACT_AHAS N-terminal ACT domain of the Escherichia
97.48 cd04881 79
ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin
97.46 cd04886 73
ACT_ThrD-II-like C-terminal ACT domain of biodegra
97.41 cd04879 71
ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te
97.4 cd02116 60
ACT ACT domains are commonly involved in specifica
97.34 cd04889 56
ACT_PDH-BS-like C-terminal ACT domain of the monof
97.25 PRK11589 190
gcvR glycine cleavage system transcriptional repre
97.22 cd04908 66
ACT_Bt0572_1 N-terminal ACT domain of a novel prot
97.22 PRK11589 190
gcvR glycine cleavage system transcriptional repre
97.21 cd04903 71
ACT_LSD C-terminal ACT domain of the L-serine dehy
97.15 cd04874 72
ACT_Af1403 N-terminal ACT domain of the yet unchar
97.13 cd04876 71
ACT_RelA-SpoT ACT domain found C-terminal of the R
97.07 cd04888 76
ACT_PheB-BS C-terminal ACT domain of a small (~147
96.97 cd04882 65
ACT_Bt0572_2 C-terminal ACT domain of a novel prot
96.97 PRK06027 286
purU formyltetrahydrofolate deformylase; Reviewed
96.92 COG3830 90
ACT domain-containing protein [Signal transduction
96.64 cd04909 69
ACT_PDH-BS C-terminal ACT domain of the monofuncti
96.63 PRK08577 136
hypothetical protein; Provisional
96.47 cd04884 72
ACT_CBS C-terminal ACT domain of the cystathionine
96.41 PRK13011 286
formyltetrahydrofolate deformylase; Reviewed
96.36 cd04905 80
ACT_CM-PDT C-terminal ACT domain of the bifunction
96.34 TIGR00655 280
PurU formyltetrahydrofolate deformylase. This mode
96.29 PRK13010 289
purU formyltetrahydrofolate deformylase; Reviewed
96.29 cd04902 73
ACT_3PGDH-xct C-terminal ACT (regulatory) domain o
96.06 PRK04435 147
hypothetical protein; Provisional
96.04 cd04901 69
ACT_3PGDH C-terminal ACT (regulatory) domain of D-
96.02 PRK11092 702
bifunctional (p)ppGpp synthetase II/ guanosine-3',
95.95 cd04883 72
ACT_AcuB C-terminal ACT domain of the Bacillus sub
95.85 TIGR00119 157
acolac_sm acetolactate synthase, small subunit. ac
95.77 TIGR00691 683
spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (
95.71 PRK07334 403
threonine dehydratase; Provisional
95.68 COG0317 701
SpoT Guanosine polyphosphate pyrophosphohydrolases
95.57 PRK10872 743
relA (p)ppGpp synthetase I/GTP pyrophosphokinase;
95.52 PRK00227 693
glnD PII uridylyl-transferase; Provisional
95.45 COG2716 176
GcvR Glycine cleavage system regulatory protein [A
95.28 CHL00100 174
ilvH acetohydroxyacid synthase small subunit
95.27 PRK11895 161
ilvH acetolactate synthase 3 regulatory subunit; R
95.19 PRK08178 96
acetolactate synthase 1 regulatory subunit; Review
94.74 COG2716 176
GcvR Glycine cleavage system regulatory protein [A
94.48 cd04904 74
ACT_AAAH ACT domain of the nonheme iron-dependent,
94.21 cd04898 77
ACT_ACR-like_4 ACT domain-containing protein which
94.15 PRK06737 76
acetolactate synthase 1 regulatory subunit; Valida
93.87 cd04931 90
ACT_PAH ACT domain of the nonheme iron-dependent a
93.8 PRK13562 84
acetolactate synthase 1 regulatory subunit; Provis
93.79 cd04871 84
ACT_PSP_2 ACT domains found N-terminal of phosphos
93.76 cd04880 75
ACT_AAAH-PDT-like ACT domain of the nonheme iron-d
93.48 PRK11152 76
ilvM acetolactate synthase 2 regulatory subunit; P
93.12 PRK08818 370
prephenate dehydrogenase; Provisional
92.03 COG4747 142
ACT domain-containing protein [General function pr
91.62 PF13840 65
ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2
91.26 cd04929 74
ACT_TPH ACT domain of the nonheme iron-dependent a
91.2 cd04891 61
ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-
91.17 cd04885 68
ACT_ThrD-I Tandem C-terminal ACT domains of threon
91.17 COG0788 287
PurU Formyltetrahydrofolate hydrolase [Nucleotide
90.74 PRK11899 279
prephenate dehydratase; Provisional
90.47 PRK06382 406
threonine dehydratase; Provisional
90.32 PF13710 63
ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
90.09 TIGR00719 208
sda_beta L-serine dehydratase, iron-sulfur-depende
90.03 cd04906 85
ACT_ThrD-I_1 First of two tandem C-terminal ACT do
89.81 cd04913 75
ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-
89.06 COG4747 142
ACT domain-containing protein [General function pr
89.04 cd04930 115
ACT_TH ACT domain of the nonheme iron-dependent ar
88.74 PRK06349 426
homoserine dehydrogenase; Provisional
88.69 cd04868 60
ACT_AK-like ACT domains C-terminal to the catalyti
88.05 PRK11790 409
D-3-phosphoglycerate dehydrogenase; Provisional
86.91 COG0077 279
PheA Prephenate dehydratase [Amino acid transport
86.58 PRK10622 386
pheA bifunctional chorismate mutase/prephenate deh
86.13 TIGR01127 380
ilvA_1Cterm threonine dehydratase, medium form. A
85.26 cd04919 66
ACT_AK-Hom3_2 ACT domains located C-terminal to th
84.78 COG1707 218
ACT domain-containing protein [General function pr
84.0 cd04922 66
ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona
83.86 COG2150 167
Predicted regulator of amino acid metabolism, cont
83.7 PRK08198 404
threonine dehydratase; Provisional
81.02 PRK06545 359
prephenate dehydrogenase; Validated
80.22
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Hide alignment and domain information
Probab=99.90 E-value=1.3e-23 Score=139.62 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=49.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+|||||.++||||||++|+++|+++||+|++|||+|+|||++|+|||+|.+
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~ 51 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL 51 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC
Confidence 699999999999999999999999999999999999999999999999875
This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=99.88 E-value=9.6e-23 Score=136.50 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=49.7
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+|||||.++||||||++|+++|.++||+|+.|+|+|+||+++|+|||+|.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~ 51 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD 51 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC
Confidence 699999999999999999999999999999999999999999999999875
This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK01759 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.83 E-value=1.4e-20 Score=167.02 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=64.1
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|||++|+++|+|||.+.||||||++|+++|.++|++|+.|||+|.||+++|+|||+|.+
T Consensus 767 ~~~~-~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~ 833 (854)
T PRK01759 767 FHVK-TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ 833 (854)
T ss_pred CCCC-CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC
Confidence 3567 899999999999999999999999999999999999999999999999999999999999864
>PRK05007 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.83 E-value=2e-20 Score=166.53 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=64.1
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|||++|+++|+|||.+.||||||++|+++|.++||+|+.|||+|.||+++|+|||+|.+
T Consensus 792 ~~~~-~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~ 858 (884)
T PRK05007 792 FNVP-TEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD 858 (884)
T ss_pred CCCC-CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC
Confidence 4567 899999999999999999999999999999999999999999999999999999999999864
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=99.82 E-value=2.6e-20 Score=124.78 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=46.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE--ecCCceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF--LDSSGKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is--T~Ger~~DvFYVTD~ 103 (106)
|++||.++|||||||+|+++|+++||+|+.|||+ |.||+++|+||| |.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~ 50 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS 50 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC
Confidence 7999999999999999999999999999999999 999999999999 44
This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=99.71 E-value=2.2e-17 Score=148.15 Aligned_cols=67 Identities=28% Similarity=0.359 Sum_probs=64.6
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
.+|+ |+|.|.|+.+...|++||.+.||||||++++++|.++||+|+.|||+|.||+++|+|||||..
T Consensus 775 f~i~-p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~ 841 (867)
T COG2844 775 FPIP-PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD 841 (867)
T ss_pred eccC-CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc
Confidence 5677 999999999999999999999999999999999999999999999999999999999999875
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase
Back Show alignment and domain information
Probab=99.69 E-value=8.5e-17 Score=141.86 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=63.5
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|||+.|+++|+|+|.+.||||||++|+++|.++|++|+.|+|+|.|++++|+|||++..
T Consensus 763 ~~~~-~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~ 829 (850)
T TIGR01693 763 FAVP-PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF 829 (850)
T ss_pred CCCC-CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC
Confidence 3456 899999999999999999999999999999999999999999999999999999999999754
This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
>PRK04374 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.69 E-value=1.1e-16 Score=143.12 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=64.3
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.|+|+.++.+|+|+|.+.||||||++|+++|.++||+|+.|+|+|.|++++|+|||+|.+
T Consensus 780 ~~~~-~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~ 846 (869)
T PRK04374 780 FRFA-PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH 846 (869)
T ss_pred CCCC-CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 5577 899999999999999999999999999999999999999999999999999999999999865
>PRK00275 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.66 E-value=3.3e-16 Score=140.01 Aligned_cols=67 Identities=25% Similarity=0.272 Sum_probs=63.9
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..++ |+|.|+|+.+..+|+|+|.+.||||||++|+++|.++||+|+.|+|.|.|++++|+|||+|.+
T Consensus 798 ~~~~-~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~ 864 (895)
T PRK00275 798 FAFP-TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD 864 (895)
T ss_pred CCCC-CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence 3566 899999999999999999999999999999999999999999999999999999999999864
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=99.64 E-value=6.2e-16 Score=100.36 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=48.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
|||||.+.||||||++|+++|.++|++|+.|+|.|.|+++.|+|||+|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~ 50 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE 50 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence 79999999999999999999999999999999999999999999999854
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK03381 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.63 E-value=9.1e-16 Score=135.32 Aligned_cols=67 Identities=31% Similarity=0.383 Sum_probs=63.7
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..+| |+|.++|+.+..+|+|+|.+.||||||++|+++|.++|++|+.|+|.|.|++++|+|||+|.+
T Consensus 691 ~~~~-~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 691 PAAP-PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred CCCC-cEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 4456 899999999999999999999999999999999999999999999999999999999999875
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=99.63 E-value=1.6e-15 Score=99.40 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=47.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
++||.+.||||||++++++|+++||+|+.|+|.| .|+++.|+|||+|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~ 51 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR 51 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence 6899999999999999999999999999999996 999999999999864
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK05092 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.62 E-value=1.6e-15 Score=135.49 Aligned_cols=67 Identities=30% Similarity=0.458 Sum_probs=63.7
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..++ |+|.|||+.++.+|+|+|.+.||||||++|+++|.++|++|+.|+|.|.|++++|+|||+|.+
T Consensus 827 ~~~~-~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~ 893 (931)
T PRK05092 827 FHVP-PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF 893 (931)
T ss_pred CCCC-CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC
Confidence 4566 899999999999999999999999999999999999999999999999999999999999854
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains
Back Show alignment and domain information
Probab=99.60 E-value=4.1e-15 Score=95.52 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=47.3
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEEeecc
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY 104 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYVTD~~ 104 (106)
++-|+|.+.||||||++++++|..+||+|+.|+|.|. +++++|+|||+|.+
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 4678999999999999999999999999999999987 68999999999764
This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK03059 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.60 E-value=3.5e-15 Score=132.97 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=62.5
Q ss_pred CCcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 37 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 37 ~~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
..+| |+|.|+|+.++.+|+|+|.+.||||||++|+++|..+||+|+.|+|.|.|++++|+|||++.
T Consensus 770 ~~~~-~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~ 835 (856)
T PRK03059 770 FPIT-PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS 835 (856)
T ss_pred CCCC-ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC
Confidence 4566 89999999999999999999999999999999999999999999999999999999999754
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase
Back Show alignment and domain information
Probab=99.41 E-value=9.7e-13 Score=116.37 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=60.7
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYVTD~~ 104 (106)
|.|.++|..+..+|.|+|.+.||||||++|+.+|..+||+|+.|+|. |.|++++|+|||+|.+
T Consensus 656 ~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 79999999999999999999999999999999999999999999999 8999999999999865
This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
>PRK01759 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.41 E-value=1e-12 Score=117.29 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=61.0
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
|.|.|+|+.+..+|.|+|.+.||||||++|+.+|..+||+|+.|+|.| .+++++|+|||+|.+
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~ 728 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN 728 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999988 999999999999875
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=99.36 E-value=4.2e-12 Score=81.80 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=47.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
|-|+|...||||+|++++++|+++|++|++|+|.|.++++.|+|||+|.+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~ 51 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN 51 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC
Confidence 56899999999999999999999999999999999989999999999864
This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK05007 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.34 E-value=4.1e-12 Score=113.75 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=60.8
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC-ceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-r~~DvFYVTD~~ 104 (106)
|.|.|+|+.+..+|.|+|.+.||||||++|+.+|..+||+|+.|+|.|.++ ++.|+|||+|.+
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~ 752 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD 752 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC
Confidence 899999999999999999999999999999999999999999999999888 999999999875
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains
Back Show alignment and domain information
Probab=99.29 E-value=2e-11 Score=75.77 Aligned_cols=50 Identities=34% Similarity=0.420 Sum_probs=47.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
|+++|.+.||||+|.+++++|.++|++|..+++.+.++++.|.|||.+.+
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~ 50 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD 50 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence 78999999999999999999999999999999999999999999998754
This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK05092 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=99.02 E-value=1.4e-09 Score=97.65 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=59.6
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
+.|.+.++.+..+|.|.|.+.||||||.+|+.+|..+|++|+.|+|.| .++.+.|+|||+|.+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~ 783 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF 783 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence 799999999999999999999999999999999999999999999988 788899999998754
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains
Back Show alignment and domain information
Probab=98.97 E-value=2.7e-09 Score=70.47 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=43.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEEeecc
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY 104 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYVTD~~ 104 (106)
|-|.++|||||+.+++.+|..+||+|+.|+|-|- .+++.|+|+|+|.+
T Consensus 4 I~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~ 52 (68)
T cd04928 4 ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK 52 (68)
T ss_pred EEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence 5688999999999999999999999999999964 56899999999875
This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
Back Show alignment and domain information
Probab=98.95 E-value=5.6e-09 Score=63.78 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=46.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
+.+.|...||||+|++++++|+++|++|..+++.+.+++..++|+|.+.+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 46889999999999999999999999999999999988999999997654
This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
>PRK00275 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=98.87 E-value=1.1e-08 Score=92.29 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=56.0
Q ss_pred CEEEEeCCCC---CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSD---PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss---~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYVTD~~ 104 (106)
|.|.+.+... ..+|.|-|.+.|||||+.+++.+|..+||+|+.|+|. |..+.+.|+|||+|.+
T Consensus 689 ~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred CeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 5677877775 5899999999999999999999999999999999995 5566899999999865
>PRK03381 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=98.85 E-value=1.5e-08 Score=90.01 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 40 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 40 p~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
..|.|.+.++. ...|.|.|.+.|||||+.+|+.+|..+|+||..|+|.|.++++.|+|+|++.+
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~ 649 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF 649 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence 34799999888 99999999999999999999999999999999999999888999999999753
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold
Back Show alignment and domain information
Probab=98.78 E-value=3.5e-08 Score=59.61 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=42.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC--ceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge--r~~DvFYVTD~ 103 (106)
|.|.|...||||+|.+++++|.++|+||..+++.+.++ +....+.+.|.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~ 51 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE 51 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence 57899999999999999999999999999999999988 55555555543
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
>PRK03059 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=98.60 E-value=2e-07 Score=83.80 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=57.5
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYVTD~~ 104 (106)
|.|.+.++.....|-|-|.+.|||||+..++.+|..+||+|..|+|. |..+.+.|+|+|+|.+
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 57779888888999999999999999999999999999999999995 5677899999998764
>PRK04374 PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=98.46 E-value=9.3e-07 Score=79.93 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=55.1
Q ss_pred CEEEE-eCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEEeecc
Q 033987 42 PKVII-DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY 104 (106)
Q Consensus 42 prV~I-DN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYVTD~~ 104 (106)
|.|.+ ........|-|-|.+.|||||+..|+.+|..+||+|..|+|.| ..+.+.|+|+|+|.+
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~ 741 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD 741 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence 44444 4466778999999999999999999999999999999999998 677899999999865
>PRK00227 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=98.40 E-value=2.3e-07 Score=82.46 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=49.8
Q ss_pred CCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 40 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 40 p~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
.+|+|.+.. +|+||.+.||+|+|+.++++|- +|..|+++|.|..++|+||++..
T Consensus 623 ~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~ 676 (693)
T PRK00227 623 GITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG 676 (693)
T ss_pred CCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc
Confidence 448999886 8999999999999999999999 89999999999999999999753
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A
Back Show alignment and domain information
Probab=98.27 E-value=4.5e-06 Score=54.07 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=40.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEe
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 101 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVT 101 (106)
-||.|.+.||||++++++++|.+.|.||...+.++-|+++.=.+-|.
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~ 49 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS 49 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence 47999999999999999999999999999999999999988777663
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)
Back Show alignment and domain information
Probab=98.14 E-value=6.6e-06 Score=52.83 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
+|.|.+.||||++++++++|+++|+||...+-.+.++++.=.|.|
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v 45 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILV 45 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEE
Confidence 578999999999999999999999999999888888776555555
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=98.06 E-value=7.9e-06 Score=54.82 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
|+|.|.-+|+.||=-|+.+++.+.||+|.++.++|+|.|..=+|.|.-.
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~ 49 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR 49 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence 6899999999999999999999999999999999999999999999643
This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)
Back Show alignment and domain information
Probab=98.05 E-value=1.2e-05 Score=51.20 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=36.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
||.|.+.||||++.+|++.|+++|++|...+-.++-+ ...|++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~--~~~f~~ 43 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPD--SGRFFM 43 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCC--CCeEEE
Confidence 5889999999999999999999999999998886322 234665
This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains
Back Show alignment and domain information
Probab=97.94 E-value=2.9e-05 Score=50.48 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=36.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
-|+.+.+.||||+.+.|++.|+++|.||...+....++++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 3788999999999999999999999999999999977766
This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains
Back Show alignment and domain information
Probab=97.93 E-value=3.3e-05 Score=49.07 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=37.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc--eeEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG--KHNKFAI 100 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger--~~DvFYV 100 (106)
+|.|.+.||||++.+|++.|.++|++|......+.+.. -...|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~ 47 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKA 47 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEE
Confidence 47899999999999999999999999999999988732 2345543
This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A
Back Show alignment and domain information
Probab=97.86 E-value=9.6e-05 Score=47.34 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
.-+-++|.+.||+|+|.+|+++|.+.|++|....+.+..
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~ 43 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNK 43 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEec
Confidence 446689999999999999999999999999999999953
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein
Back Show alignment and domain information
Probab=97.70 E-value=8e-05 Score=48.97 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=36.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCcee
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 95 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~ 95 (106)
-++.+.+.||||+++++++.|++.|+||....-.+.++++.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~ 42 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFT 42 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccE
Confidence 37899999999999999999999999999998888766543
This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK00194 hypothetical protein; Validated
Back Show alignment and domain information
Probab=97.69 E-value=4.6e-05 Score=49.93 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=35.9
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
.-++.|.+.||||++.++++.|++.|+||....-.+.++++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~ 43 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYF 43 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCee
Confidence 45899999999999999999999999999988877766543
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein
Back Show alignment and domain information
Probab=97.64 E-value=0.00013 Score=46.53 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=32.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
++|.+.||+|+|.+|+++|++.|.+|....+.+.
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 7899999999999999999999999999999876
ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains
Back Show alignment and domain information
Probab=97.60 E-value=0.00042 Score=43.12 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++|...||||+|.+|+++|++.|.+|.........
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec
Confidence 68999999999999999999999999988887753
The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=97.53 E-value=0.0003 Score=64.60 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=57.9
Q ss_pred CEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc-eeEEEEEeecc
Q 033987 42 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAITKAY 104 (106)
Q Consensus 42 prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger-~~DvFYVTD~~ 104 (106)
|-|.+-+......|=|-|.+.|+|.|+..++.++...|++|+.|.|-|--+. +.|+|+|.|.+
T Consensus 672 ~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~ 735 (867)
T COG2844 672 PLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD 735 (867)
T ss_pred cceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence 6788888888899999999999999999999999999999999999997775 99999999765
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)
Back Show alignment and domain information
Probab=97.48 E-value=0.00094 Score=39.84 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=37.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEEee
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITK 102 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYVTD 102 (106)
+.+...||+|+|.++++.|.+.|.+|.+....+. ++......+.++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 6788999999999999999999999999998876 555455554444
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains
Back Show alignment and domain information
Probab=97.46 E-value=0.00086 Score=40.69 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=36.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC-ceeEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAIT 101 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-r~~DvFYVT 101 (106)
.+.|...||+|+|.+++++|.+.|.+|.+....+..+ ......+++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 4788999999999999999999999999998766532 333444443
The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains
Back Show alignment and domain information
Probab=97.41 E-value=0.00078 Score=40.30 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
+.|...||||+|.+++++|.+.|++|.+-.....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999987776554
This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)
Back Show alignment and domain information
Probab=97.40 E-value=0.00087 Score=39.77 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=36.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC--CceeEEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAI 100 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G--er~~DvFYV 100 (106)
+.|...||+|+|.+++++|.+.|++|....+...+ +...=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56889999999999999999999999999998865 343444444
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
Back Show alignment and domain information
Probab=97.34 E-value=0.0017 Score=34.95 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=36.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC-CceeEEEEEee
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 102 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G-er~~DvFYVTD 102 (106)
|.+...|++|+|.++.++|.+.|++|......... ......++..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46788999999999999999999999999987754 33445554443
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
Back Show alignment and domain information
Probab=97.25 E-value=0.0016 Score=38.95 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=38.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC-CceeEEEEEee
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK 102 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G-er~~DvFYVTD 102 (106)
++|.-.||||.|.++++.|.+.|+||...++...+ +...=.|-+-|
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988755 67776665544
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Back Show alignment and domain information
Probab=97.22 E-value=0.00059 Score=52.28 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=39.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC--ceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge--r~~DvFYV 100 (106)
-.|+|.+.||||+++++++.|++.|+||..=+=.+++. +-.+.|..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~ 143 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHI 143 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEE
Confidence 57899999999999999999999999999888888775 55666654
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains
Back Show alignment and domain information
Probab=97.22 E-value=0.0012 Score=41.09 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=34.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 93 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 93 (106)
-+.|.-.|+||.|.++++.|.+.|+||...++...++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 46788999999999999999999999999999877664
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Back Show alignment and domain information
Probab=97.21 E-value=0.00058 Score=52.32 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=44.4
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
..++-||.|.+.||||+.+.|+++|+++|+||...+.+.-|+.+.=.+-|
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 35788999999999999999999999999999999999999887655544
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit
Back Show alignment and domain information
Probab=97.15 E-value=0.0031 Score=37.60 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+.+...||+|.|.++++.|.+.|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 577899999999999999999999999888766
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a
Back Show alignment and domain information
Probab=97.13 E-value=0.0039 Score=37.37 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
.+.+...|++|+|.++.+.|.+.|++|.+.......
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 467889999999999999999999999988887753
a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains
Back Show alignment and domain information
Probab=97.07 E-value=0.004 Score=35.40 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 93 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 93 (106)
+.|...|++|+|.++.+.|.+.|++|....+...++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~ 37 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDG 37 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCC
Confidence 4678899999999999999999999999998877633
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a
Back Show alignment and domain information
Probab=96.97 E-value=0.0028 Score=39.32 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
++|...||||+|.++.++|++.|.+|..-...+.
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 6889999999999999999999999998876553
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains
Back Show alignment and domain information
Probab=96.97 E-value=0.0026 Score=38.12 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=31.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++.|.-.||||.|.++.+.|.+.|.+|........+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467888999999999999999999999888765554
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Back Show alignment and domain information
Probab=96.92 E-value=0.0031 Score=50.56 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=36.7
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe--cCC
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSS 92 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT--~Ge 92 (106)
-..-+|.|.+.||||+.++|+++|+++|+||....-.+ .++
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g 46 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG 46 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence 34568999999999999999999999999999999988 444
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=96.64 E-value=0.0026 Score=44.59 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=28.8
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
..||.|.+.||||+-+.+.++|+++|+||..
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 4589999999999999999999999999975
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)
Back Show alignment and domain information
Probab=96.63 E-value=0.01 Score=36.52 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=35.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCceeEEEEEe
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFAIT 101 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~~DvFYVT 101 (106)
+.|.-.||||.|.++++.|.+.|++|........ +....-.|.+.
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 6678899999999999999999999998877664 21333355553
The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK08577 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=96.47 E-value=0.023 Score=40.37 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=36.5
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
......-+.|.+.||+|+|.+++++|++.|.+|......+..
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 334478899999999999999999999999999988877654
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria
Back Show alignment and domain information
Probab=96.41 E-value=0.019 Score=36.02 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=29.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
+.|.-.||||-|.++++.|++.|.+|.+-...-.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4678899999999999999999999987766554
This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Back Show alignment and domain information
Probab=96.36 E-value=0.0096 Score=47.95 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=35.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
-+|.|.+.||||+..++++.|+++|+||....-.+ +...+.|+.
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~--~~~~~~F~m 51 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFD--DRLSGRFFM 51 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeee--cCCCCeEEE
Confidence 57899999999999999999999999998766553 233445543
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme
Back Show alignment and domain information
Probab=96.34 E-value=0.032 Score=35.80 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=34.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC-ceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge-r~~DvFYV 100 (106)
|-+.+.-.|+||.|.++.+.|++.|+||.+-.....++ ...=.|||
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v 48 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI 48 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE
Confidence 44666778999999999999999999998775544432 22345666
The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
>TIGR00655 PurU formyltetrahydrofolate deformylase
Back Show alignment and domain information
Probab=96.29 E-value=0.01 Score=47.71 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=32.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
+|.|.+.||||+.+.|++.|+++|+||....-..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~ 36 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD 36 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence 68899999999999999999999999999877664
This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Back Show alignment and domain information
Probab=96.29 E-value=0.0079 Score=48.63 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=31.9
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.-||.|.+.||||+.+.|++.|+++|+||....=.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 34899999999999999999999999999987764
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)
Back Show alignment and domain information
Probab=96.06 E-value=0.02 Score=34.93 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=32.5
Q ss_pred EEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe--cCCceeEEEE
Q 033987 58 EITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSSGKHNKFA 99 (106)
Q Consensus 58 EV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT--~Ger~~DvFY 99 (106)
-+...|+||.|.++++.|++.|++|..-.... .++...=+|.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~ 46 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLS 46 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEE
Confidence 45789999999999999999999998877655 3444443333
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
>PRK04435 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=96.04 E-value=0.032 Score=40.77 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=41.1
Q ss_pred EEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 45 IIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 45 ~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
-|+.....+..-+.+...||||+|.+|.++|++.|.||..-......
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~ 106 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPL 106 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCC
Confidence 36667889999999999999999999999999999999987765543
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria
Back Show alignment and domain information
Probab=96.02 E-value=0.0049 Score=37.56 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=30.2
Q ss_pred EEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCc
Q 033987 58 EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG 93 (106)
Q Consensus 58 EV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger 93 (106)
=+.+.||||+|.+++++|.+.|.+|......+.++.
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~ 38 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEI 38 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCE
Confidence 357899999999999999999999988776655433
The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Back Show alignment and domain information
Probab=95.95 E-value=0.024 Score=50.96 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=42.9
Q ss_pred EEEEeCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 43 KVIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 43 rV~IDN~ss-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
.|.++.+.+ ...+-|+|.+.||+|+|.+|+++|++.|.+|.+....+..+..
T Consensus 614 ~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~ 666 (702)
T PRK11092 614 AVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRV 666 (702)
T ss_pred EeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCE
Confidence 367776533 3566799999999999999999999999999999988876433
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB
Back Show alignment and domain information
Probab=95.85 E-value=0.068 Score=32.78 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=30.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+-+.+.-.|+||.|..+.+.|.+.|++|.+....-
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~ 36 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence 35778899999999999999999999999776543
This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
>TIGR00119 acolac_sm acetolactate synthase, small subunit
Back Show alignment and domain information
Probab=95.77 E-value=0.057 Score=40.46 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++.|...|+||.|.+++..|++.|+||.+-.+...+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~ 38 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE 38 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC
Confidence 588999999999999999999999999888777655
acetohydroxyacid synthase is a synonym.
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family
Back Show alignment and domain information
Probab=95.71 E-value=0.037 Score=49.43 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=42.7
Q ss_pred EEEEeCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 43 KVIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 43 rV~IDN~ss-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
.|.++.+.. ..-+-|+|.+.||+|+|.+|+.+|.+.|.+|.+..+.+..+..
T Consensus 598 ~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~ 650 (683)
T TIGR00691 598 EVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKRE 650 (683)
T ss_pred EEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCE
Confidence 366765433 4567799999999999999999999999999999998875433
(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
>PRK07334 threonine dehydratase; Provisional
Back Show alignment and domain information
Probab=95.68 E-value=0.045 Score=45.13 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=34.4
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
.+-|+|.+.||+|+|.+|+++|++.+.+|.+....+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4789999999999999999999999999999998765
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Back Show alignment and domain information
Probab=95.57 E-value=0.049 Score=49.47 Aligned_cols=56 Identities=25% Similarity=0.159 Sum_probs=47.9
Q ss_pred EEEEeCC-CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEE
Q 033987 43 KVIIDLD-SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 98 (106)
Q Consensus 43 rV~IDN~-ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvF 98 (106)
-|..+++ ....-.=|+|.+.||+|||.+|+++|.+.+.||.+....++++++.+..
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~ 671 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ 671 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence 4777877 4577788999999999999999999999999999999988866665544
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Back Show alignment and domain information
Probab=95.52 E-value=0.068 Score=48.68 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=40.5
Q ss_pred EEEeCCCC-CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 44 VIIDLDSD-PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 44 V~IDN~ss-~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
|.+++..+ ....-|+|.+.||+|||.+|+.+|++.+++|....+.+..
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~ 703 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDT 703 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 66765423 3556799999999999999999999999999999998764
>PRK00227 glnD PII uridylyl-transferase; Provisional
Back Show alignment and domain information
Probab=95.45 E-value=0.048 Score=49.12 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=40.7
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEee
Q 033987 55 TIVEITF-GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 102 (106)
Q Consensus 55 TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD 102 (106)
-.+.|.. +|++|+|..++.+|+-.|++|++|.+.+ ++.++..|-|..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~ 594 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA 594 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec
Confidence 4666777 9999999999999999999999999999 555578998863
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=95.28 E-value=0.0077 Score=46.70 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=44.5
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
..+|-||.+.+.||||+...++|+..+.|.|+..++++..|+.+.=+--|
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li 51 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI 51 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE
Confidence 35778999999999999999999999999999999999999987655443
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Back Show alignment and domain information
Probab=95.27 E-value=0.069 Score=40.74 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=31.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.|...||||+|.+++..|++.|+||.+=.+..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 6889999999999999999999999999888754
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Back Show alignment and domain information
Probab=95.19 E-value=0.11 Score=39.08 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
++.|...|+||.|.+|+..|++.|.||.+-.+.-..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te 39 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTE 39 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecC
Confidence 578999999999999999999999999887765543
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Back Show alignment and domain information
Probab=94.74 E-value=0.18 Score=35.64 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=35.5
Q ss_pred CCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC
Q 033987 48 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 92 (106)
Q Consensus 48 N~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 92 (106)
|.+...+| +.|...|+||+|..|+..|+.-|.||.+=.+.--++
T Consensus 3 ~~~~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~ 46 (96)
T PRK08178 3 NTTHDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQD 46 (96)
T ss_pred CCCCCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCC
Confidence 34445555 799999999999999999999999999876654333
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=94.48 E-value=0.035 Score=43.11 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=30.2
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
+...--.++|.+.||||++.++++.|..+|++|..
T Consensus 88 a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~ 122 (176)
T COG2716 88 ANPAPVWVYVDANDRPGIVEEFTALFDGHGINIEN 122 (176)
T ss_pred CCCceEEEEEEecCCccHHHHHHHHHHhcCCchhh
Confidence 33444578999999999999999999999999864
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)
Back Show alignment and domain information
Probab=94.21 E-value=0.093 Score=33.74 Aligned_cols=28 Identities=18% Similarity=0.508 Sum_probs=23.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
+-+.-.|+||.|+++.+.|++.|+|+.+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~ 30 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTH 30 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEE
Confidence 3344588999999999999999999875
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)
Back Show alignment and domain information
Probab=94.15 E-value=0.015 Score=39.98 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=30.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
||+++.-||-.+||++-+|+.||..|-+|.|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIg 34 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIG 34 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhh
Confidence 79999999999999999999999999999995
This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Back Show alignment and domain information
Probab=93.87 E-value=0.32 Score=32.69 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=30.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.+.+...|+||.|..++..|+.-|.||.+=.+.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg 36 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLN 36 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence 478999999999999999999999999988776
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)
Back Show alignment and domain information
Probab=93.80 E-value=0.18 Score=34.43 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=36.0
Q ss_pred eCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEE
Q 033987 47 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 100 (106)
Q Consensus 47 DN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYV 100 (106)
++......|-+-+.-.|+||.|+++.+.|++.|+|+.+=.=--- +....=.|||
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV 61 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI 61 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 33344445666667799999999999999999999875322211 2222446666
ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Back Show alignment and domain information
Probab=93.79 E-value=0.13 Score=35.60 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
++.+...|+||.|..++..|...|.||.+=.++--
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~T 38 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHS 38 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEeccc
Confidence 57889999999999999999999999999887643
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)
Back Show alignment and domain information
Probab=93.76 E-value=0.043 Score=36.51 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.5
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCcEEEE
Q 033987 56 IVEITFGD-RLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 56 VVEV~a~D-RpGLL~di~~aL~dLgL~I~~ 84 (106)
||.|-++| +.|.++.|+++|+++|+||..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 57789999 999999999999999999863
The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)
Back Show alignment and domain information
Probab=93.48 E-value=0.15 Score=32.09 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=28.9
Q ss_pred EeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEE
Q 033987 60 TFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 100 (106)
Q Consensus 60 ~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYV 100 (106)
.-.|+||.|.++.+.|++.|+||.+-.=.- .++...=.|||
T Consensus 5 ~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i 46 (75)
T cd04880 5 SLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV 46 (75)
T ss_pred EeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence 346999999999999999999998762221 23233345555
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Back Show alignment and domain information
Probab=93.12 E-value=0.17 Score=33.91 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=31.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.+...|+||.|..++..+..-|.||.+=.+.-
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence 5789999999999999999999999999887765
>PRK08818 prephenate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=92.03 E-value=0.51 Score=39.53 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=35.5
Q ss_pred cEEEEEEeC-CcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 54 ATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~-DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
.+-+-+.-. |+||.|+++...|.+.|+||.+=.+ .......-.|||
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i 341 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI 341 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence 444555554 9999999999999999999998888 444434555887
>COG4747 ACT domain-containing protein [General function prediction only]
Back Show alignment and domain information
Probab=91.62 E-value=0.4 Score=36.08 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=35.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
-|.|+..||||=|..++.+|++.|+||+.=.|+--||--
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 378999999999999999999999999999999888743
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D
Back Show alignment and domain information
Probab=91.26 E-value=0.51 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCcEEEEEEeC----CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITFG----DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a~----DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
++...|.|.+. |.||.+..+.++|.+.|++|..-.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45667777777 899999999999999999997655
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes
Back Show alignment and domain information
Probab=91.20 E-value=0.41 Score=31.40 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=29.3
Q ss_pred EEeCCcccHHHHHHHHHHhCCcEEEEEEEEec-CCceeEEEEE
Q 033987 59 ITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI 100 (106)
Q Consensus 59 V~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~-Ger~~DvFYV 100 (106)
+.-.|+||.|+++.+.|++.|+++.+=.=--- ++...=.|||
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i 47 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV 47 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence 44479999999999999999999875332221 2223446666
ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins
Back Show alignment and domain information
Probab=91.17 E-value=1.1 Score=25.55 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.4
Q ss_pred eCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 61 FGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 61 a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
..|++|.+.++.++|.+.|++|..-...
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4788999999999999999999876553
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)
Back Show alignment and domain information
Probab=91.17 E-value=0.88 Score=28.38 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 58 EITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 58 EV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.|.-.||||-|..+.+.|.. |.||..-+=.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~ 31 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR 31 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence 57789999999999999999 9998865443
This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=90.74 E-value=0.61 Score=38.70 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=34.1
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
...++.|+..|++|+.+.|+..|.+.|+||..+.-.+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 5689999999999999999999999999999887764
>PRK11899 prephenate dehydratase; Provisional
Back Show alignment and domain information
Probab=90.47 E-value=0.56 Score=37.88 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=35.3
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYV 100 (106)
.|-+-+.-.||||.|+++.++|++.|+|+.+=.=- +.++-..=.|||
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i 241 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA 241 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE
Confidence 56677777899999999999999999998763322 123334668887
>PRK06382 threonine dehydratase; Provisional
Back Show alignment and domain information
Probab=90.32 E-value=0.49 Score=39.18 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=33.3
Q ss_pred CCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 51 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 51 s~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
..+.+-++|.-.||||.|.++++.|.+.|.||.+-..
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~ 363 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEV 363 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 5678899999999999999999999999999976554
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B
Back Show alignment and domain information
Probab=90.09 E-value=1.3 Score=28.08 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 63 DRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 63 DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
|+||.|..|+..|..-|.+|.+=.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~ 27 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP 27 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence 789999999999999999999988887
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit
Back Show alignment and domain information
Probab=90.03 E-value=1.1 Score=34.24 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=42.4
Q ss_pred EEEEeC---CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCcee
Q 033987 43 KVIIDL---DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKH 95 (106)
Q Consensus 43 rV~IDN---~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~~ 95 (106)
.|.||. +..+....+=+...||||.+-.++..|.+.|+||..-.+.-. |+.++
T Consensus 134 iv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai 191 (208)
T TIGR00719 134 ITEINGFAIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL 191 (208)
T ss_pred EEEECCEEEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE
Confidence 566665 456666677788899999999999999999999999988764 44444
This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)
Back Show alignment and domain information
Probab=89.81 E-value=1.9 Score=28.21 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=22.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~ 84 (106)
++.|.-.||||-|..+.++|. |-+|..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~ 29 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITE 29 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence 688999999999999999999 445543
This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins
Back Show alignment and domain information
Probab=89.06 E-value=1.3 Score=26.40 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 62 GDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 62 ~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
.|++|.+.++.++|.+.|++|..-.-
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 68999999999999999999985543
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
>COG4747 ACT domain-containing protein [General function prediction only]
Back Show alignment and domain information
Probab=89.04 E-value=1.4 Score=33.20 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=32.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 92 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 92 (106)
-|+-|.-.|+||-|..|+.+|.+.++|+.-++-.+.-.
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek 107 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK 107 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC
Confidence 46788889999999999999999999999887765444
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)
Back Show alignment and domain information
Probab=88.74 E-value=1.1 Score=31.91 Aligned_cols=32 Identities=3% Similarity=0.178 Sum_probs=26.6
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKA 85 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A 85 (106)
.|-+-+.-.|+||.|+++.+.|++.|+|+.+=
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~I 72 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHL 72 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEE
Confidence 35555666999999999999999999998753
ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
>PRK06349 homoserine dehydrogenase; Provisional
Back Show alignment and domain information
Probab=88.69 E-value=1.6 Score=36.62 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=39.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 103 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~ 103 (106)
-.+.+...|+||.|.+++..|.+.|++|.+-.-....+.....++||+.
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 4788889999999999999999999999976554333356778888863
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)
Back Show alignment and domain information
Probab=88.05 E-value=1.1 Score=24.98 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=25.4
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCcEEEEEEE
Q 033987 56 IVEITFGD---RLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 56 VVEV~a~D---RpGLL~di~~aL~dLgL~I~~A~I 87 (106)
+|+|.+.+ .+|.+.++.++|.+.|++|..-.-
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45555554 899999999999999999976543
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Back Show alignment and domain information
Probab=86.91 E-value=1 Score=37.72 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=37.8
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEE
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF 98 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvF 98 (106)
..++++- .-.|+||.+..|+..|++.|+||..=++...|+.+.-+|
T Consensus 337 ~~~rlii-~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 337 GGHRLLH-IHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred CCceEEE-EeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 4456554 779999999999999999999998888888886665444
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=86.58 E-value=1.1 Score=36.69 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe-cCCceeEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI 100 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT-~Ger~~DvFYV 100 (106)
..|-+-+.-.|+||.|+++..+|+..|+|+.+=.=-= .+.-..=.|||
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i 241 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI 241 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE
Confidence 5788888888999999999999999999987633222 23333556766
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Back Show alignment and domain information
Probab=86.13 E-value=3.3 Score=34.83 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=35.4
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYV 100 (106)
.|-+-+...|+||.|+++-+.|++.|+|+.+=.=- +.+.-..=.|||
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi 344 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL 344 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE
Confidence 55555777899999999999999999998763322 234545677877
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form
Back Show alignment and domain information
Probab=85.26 E-value=1.2 Score=36.06 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
+.--+.|.-.||||.|.++.+.+.+.|.||..-.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~ 337 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKID 337 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 3337889999999999999999999999997653
A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3
Back Show alignment and domain information
Probab=84.78 E-value=5.8 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.1
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITFG---DRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
++|.+.+. +++|.+.++.++|.+.|+++..-.-++
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 45666665 789999999999999999997665443
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
>COG1707 ACT domain-containing protein [General function prediction only]
Back Show alignment and domain information
Probab=84.00 E-value=2.3 Score=33.83 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.4
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 92 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 92 (106)
+.+.+.+|||.|.+++..++++|-||.-|.-..+++
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~ 40 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKD 40 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhcc
Confidence 567889999999999999999999999887665544
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)
Back Show alignment and domain information
Probab=83.86 E-value=2.3 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.0
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 55 TIVEITF---GDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 55 TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
++|.|.+ .+++|++.++.++|.+.|+++..-.-
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4566666 48899999999999999999976543
This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Back Show alignment and domain information
Probab=83.70 E-value=2.3 Score=32.90 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=29.8
Q ss_pred CcEEEEEEe--CCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 53 DATIVEITF--GDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 53 ~~TVVEV~a--~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
..-|||+.. ++.||.|..++..|++.|++|.-+..
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 356788876 66799999999999999999998754
>PRK08198 threonine dehydratase; Provisional
Back Show alignment and domain information
Probab=81.02 E-value=3.2 Score=34.07 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
...+..-+.|.-.||||.|.++.+.|.+.|.||..-...
T Consensus 323 ~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 323 AAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 356667899999999999999999999999999876654
>PRK06545 prephenate dehydrogenase; Validated
Back Show alignment and domain information
Probab=80.22 E-value=2.8 Score=34.02 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 52 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 52 ~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+.+.-+-|.-.||||.|..++..|.+.|+||..-+|.-
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 45666778889999999999999999999999888843
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 106
2nyi_A 195
Unknown protein; protein structure initiative, PSI
98.86 1u8s_A 192
Glycine cleavage system transcriptional repressor,
98.69 2ko1_A 88
CTR148A, GTP pyrophosphokinase; homodimer, alpha+b
98.18 1zpv_A 91
ACT domain protein; structural genomics, PSI, prot
98.11 1u8s_A 192
Glycine cleavage system transcriptional repressor,
98.02 2nyi_A 195
Unknown protein; protein structure initiative, PSI
97.81 2jhe_A 190
Transcription regulator TYRR; aromatic hydrocarbon
97.7 3p96_A 415
Phosphoserine phosphatase SERB; ssgcid, structural
96.57 3n0v_A 286
Formyltetrahydrofolate deformylase; formyl transfe
96.26 3obi_A 288
Formyltetrahydrofolate deformylase; structural gen
96.24 3lou_A 292
Formyltetrahydrofolate deformylase; structural gen
96.23 2f1f_A 164
Acetolactate synthase isozyme III small subunit; f
96.15 3nrb_A 287
Formyltetrahydrofolate deformylase; N-terminal ACT
96.1 3o1l_A 302
Formyltetrahydrofolate deformylase; structural gen
95.95 1y7p_A 223
Hypothetical protein AF1403; structural genomics,
95.72 2pc6_A 165
Probable acetolactate synthase isozyme III (small;
95.6 2f06_A 144
Conserved hypothetical protein; structural genomic
95.47 2f06_A 144
Conserved hypothetical protein; structural genomic
95.03 2fgc_A 193
Acetolactate synthase, small subunit; regulatory s
93.81 1sc6_A 404
PGDH, D-3-phosphoglycerate dehydrogenase; alloster
91.99 2re1_A 167
Aspartokinase, alpha and beta subunits; structural
88.53 2qmw_A 267
PDT, prephenate dehydratase; APC85812, prephenate
87.82 2qmx_A 283
Prephenate dehydratase; APC86053, L-Phe inhibition
87.53 2re1_A 167
Aspartokinase, alpha and beta subunits; structural
86.96 3mwb_A 313
Prephenate dehydratase; L-Phe, PSI, MCSG, structur
85.48 2dt9_A 167
Aspartokinase; protein-ligand complex, regulatory
84.85 3luy_A 329
Probable chorismate mutase; structural genomics, A
83.52 3k5p_A 416
D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,
83.15 3p96_A 415
Phosphoserine phosphatase SERB; ssgcid, structural
82.99 2dtj_A 178
Aspartokinase; protein-ligand complex, regulatory
82.92 3mtj_A 444
Homoserine dehydrogenase; rossmann-fold, PSI, MCSG
81.89 2dtj_A 178
Aspartokinase; protein-ligand complex, regulatory
81.15 1ygy_A 529
PGDH, D-3-phosphoglycerate dehydrogenase; oxidored
81.14
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Back Hide alignment and structure
Probab=98.86 E-value=4e-09 Score=77.33 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=49.9
Q ss_pred CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC--CceeEEEEEee
Q 033987 49 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAITK 102 (106)
Q Consensus 49 ~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G--er~~DvFYVTD 102 (106)
+.+...++|+|.+.||||++++|+++|+++|+||..++..|.+ ++..|.||++.
T Consensus 88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~ 143 (195)
T 2nyi_A 88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS 143 (195)
T ss_dssp CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE
T ss_pred CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE
Confidence 4456779999999999999999999999999999999999999 88999999964
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Back Show alignment and structure
Probab=98.69 E-value=4.5e-08 Score=70.61 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC----ceeEEEEEee
Q 033987 48 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS----GKHNKFAITK 102 (106)
Q Consensus 48 N~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge----r~~DvFYVTD 102 (106)
++.+...++|+|.+.||||+|++|++.|++.|+||..++..|+++ +..|.||++.
T Consensus 87 ~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~ 145 (192)
T 1u8s_A 87 HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI 145 (192)
T ss_dssp CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE
T ss_pred CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE
Confidence 345567899999999999999999999999999999999999995 6899999964
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Back Show alignment and structure
Probab=98.18 E-value=6.7e-06 Score=51.27 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=40.6
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
..+.+.|...||||+|.+|+++|++.|++|....+.+.++.+..+|-+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v 51 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMI 51 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEE
Confidence 456789999999999999999999999999999998876655555543
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Back Show alignment and structure
Probab=98.11 E-value=1e-05 Score=51.32 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=36.4
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
...+.|.+.||||+|.+|+++|++.|.||......+.++.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~ 45 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYF 45 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEE
Confidence 46799999999999999999999999999999888766433
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Back Show alignment and structure
Probab=98.02 E-value=1.8e-05 Score=56.84 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=43.3
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEee
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 102 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD 102 (106)
..+|.|.+.||||+++.|+++|++.|+||..+.+.+.++++.=.|.|..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 4689999999999999999999999999999999988777766777643
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Back Show alignment and structure
Probab=97.81 E-value=7.8e-05 Score=54.37 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=42.0
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEe
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 101 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVT 101 (106)
..+|-|.+.|||||.+.|+.+|.++|+||..|++.+.++++.=.|.|.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~ 52 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS 52 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence 468999999999999999999999999999999998777654377764
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Back Show alignment and structure
Probab=97.70 E-value=5.1e-05 Score=51.47 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=33.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS 92 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge 92 (106)
|+|.+.||+|||.+|+++|.+.|++|....+.+.|.
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~ 38 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE
Confidence 789999999999999999999999999999988753
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Back Show alignment and structure
Probab=96.57 E-value=0.004 Score=48.76 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=37.6
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
..-+|.|.+.||||+.+.|++.|++.|.||....-...++++
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f 52 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRL 52 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEe
Confidence 456899999999999999999999999999999888777654
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Back Show alignment and structure
Probab=96.26 E-value=0.0061 Score=47.80 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=36.9
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
.-++.|.+.||||+.+.|++.|++.|+||....-.++. ..+.|+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~--~~g~Ffm 52 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDR--QSGRFFI 52 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET--TTTEEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccC--CCCeeEE
Confidence 36899999999999999999999999999988777543 2344554
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Back Show alignment and structure
Probab=96.24 E-value=0.0077 Score=47.27 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=33.7
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
..-++.|.+.||||+.+.|++.|++.|+||....-.++
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d 42 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND 42 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeec
Confidence 34689999999999999999999999999998877543
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Back Show alignment and structure
Probab=96.23 E-value=0.0076 Score=47.43 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=34.1
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
..-++.|.+.||||+.+.|++.|++.|+||....-.++
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d 46 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD 46 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec
Confidence 34689999999999999999999999999998887754
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Back Show alignment and structure
Probab=96.15 E-value=0.0097 Score=43.55 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
.++|...||||+|.+|+++|++.|.||.+..+....
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~ 40 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTD 40 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECS
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecC
Confidence 578999999999999999999999999998887533
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Back Show alignment and structure
Probab=96.10 E-value=0.0099 Score=46.61 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=36.9
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
..-++.|.+.||||+.+.|++.|++.|+||....-.++. ..+.|+.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~--~~g~Ffm 51 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDE--DSSKFFM 51 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET--TTTEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecC--CCCeEEE
Confidence 346899999999999999999999999999988775432 2334554
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Back Show alignment and structure
Probab=95.95 E-value=0.012 Score=46.69 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=33.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
-++.|.+.||||+.+.|++.|++.|+||....-.++
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 589999999999999999999999999999887765
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Back Show alignment and structure
Probab=95.72 E-value=0.013 Score=45.66 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecC
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS 91 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~G 91 (106)
.-++|...||+|+|.+|+++|++.+.||...+..+..
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 3478999999999999999999999999999999864
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Back Show alignment and structure
Probab=95.60 E-value=0.019 Score=42.14 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=31.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.|...||||+|.+|++.|++.|.||.+..+..
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~ 39 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAP 39 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEe
Confidence 5789999999999999999999999999988864
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Back Show alignment and structure
Probab=95.47 E-value=0.047 Score=37.05 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=34.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
.++-|.-.|+||.|.++.++|.+.|+||........+.+..=+|-+
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 5788888999999999999999999999776655233444334433
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Back Show alignment and structure
Probab=95.03 E-value=0.082 Score=35.83 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
-.+.|.-.||||.|.++.+.|++.|+||..-.+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 35677889999999999999999999999877754
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Back Show alignment and structure
Probab=93.81 E-value=0.24 Score=37.46 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=32.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecC
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDS 91 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~G 91 (106)
-.+.|...||||.|.+|++.|++.|.||.+=.+. |+.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted 67 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESET 67 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCC
Confidence 4688999999999999999999999999987775 443
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Back Show alignment and structure
Probab=91.99 E-value=0.45 Score=38.48 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=38.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
+-+.-.||||.|..|+++|.+.|+||..-++.+.|+.+.=+.-|
T Consensus 334 l~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 44778899999999999999999999999999988877655544
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Back Show alignment and structure
Probab=88.53 E-value=0.39 Score=33.66 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=33.0
Q ss_pred EEEEeCCCCCCcEEEEEEe-CCcccHHHHHHHHHHhCCcEEEEEEE
Q 033987 43 KVIIDLDSDPDATIVEITF-GDRLGALLDTMNALKNLGLNVVKANV 87 (106)
Q Consensus 43 rV~IDN~ss~~~TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A~I 87 (106)
-|..++ +.+.|.|.. .|+||.|.++.++|.+.|++|..-..
T Consensus 18 gIa~~~----~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 18 GIAFDK----NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEEEC----CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEEecC----CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 455543 557888885 89999999999999999999986544
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Back Show alignment and structure
Probab=87.82 E-value=0.6 Score=36.35 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=35.7
Q ss_pred CCcEEEEEEe---CCcccHHHHHHHHHHhCCcEEEEEEEEe---cCCceeEEEEE
Q 033987 52 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 100 (106)
Q Consensus 52 ~~~TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~IsT---~Ger~~DvFYV 100 (106)
...|-+-+.- .|+||.|+++.+.|++.|+|+.+ |.+ .+....=.|||
T Consensus 184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~Ffi 236 (267)
T 2qmw_A 184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSW--IESRPLKTQLGMYRFFV 236 (267)
T ss_dssp SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTCEEEEE
T ss_pred CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeE--EEEeecCCCCccEEEEE
Confidence 3456666666 89999999999999999999875 443 23334678887
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Back Show alignment and structure
Probab=87.53 E-value=0.58 Score=36.66 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=35.6
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe---cCCceeEEEEE
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 100 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT---~Ger~~DvFYV 100 (106)
..|-+-+.-.|+||.|+++.+.|++.|+|+.+ |.+ .+.-..=.|||
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~Ffv 247 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTK--IESRPSRKKAFEYLFYA 247 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTEEEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeE--EEeeEcCCCCcceEEEE
Confidence 35666666689999999999999999999875 444 34444778887
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Back Show alignment and structure
Probab=86.96 E-value=1 Score=31.52 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=32.3
Q ss_pred CCcEEEEEEeCC---cccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 52 PDATIVEITFGD---RLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 52 ~~~TVVEV~a~D---RpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
+..++|.|.+.+ +||.+..+.++|.+.|++|.. |+|
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~--ist 139 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM--IST 139 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE--EEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE--EEc
Confidence 468999999988 999999999999999999987 455
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Back Show alignment and structure
Probab=85.48 E-value=0.96 Score=36.00 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=34.8
Q ss_pred CcEEEEEEeC-CcccHHHHHHHHHHhCCcEEEEEEEEe---cCCceeEEEEE
Q 033987 53 DATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 100 (106)
Q Consensus 53 ~~TVVEV~a~-DRpGLL~di~~aL~dLgL~I~~A~IsT---~Ger~~DvFYV 100 (106)
..|-|-+.-. |+||.|+++.+.|++.|+|+.+ |.+ .+.-..=.|||
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~Ffi 249 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSR--IESRPTGQYLGHYFFSI 249 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEE--EEEEECSSSTTSEEEEE
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEE--EEEeecCCCCccEEEEE
Confidence 4576767774 9999999999999999999864 444 23333567887
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Back Show alignment and structure
Probab=84.85 E-value=0.65 Score=32.44 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCcEEEEEEe-CCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITF-GDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a-~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
.+.++|.|.+ .|+||.+.++.++|.+.|++|..-.
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~ 49 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMII 49 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 4567777766 7999999999999999999998743
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Back Show alignment and structure
Probab=83.52 E-value=1.3 Score=35.42 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHHHhCCcEEEEEEEEe---cCCceeEEEEE
Q 033987 62 GDRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 100 (106)
Q Consensus 62 ~DRpGLL~di~~aL~dLgL~I~~A~IsT---~Ger~~DvFYV 100 (106)
.|+||.|+++-..|++.|+|+.+ |.+ .+.-..=.|||
T Consensus 216 ~~~pGaL~~~L~~Fa~~gINLtk--IESRP~~~~~~~Y~Ffi 255 (329)
T 3luy_A 216 VTGPGVLANLLDVFRDAGLNMTS--FISRPIKGRTGTYSFIV 255 (329)
T ss_dssp CCSTTHHHHHHHHHHHTTCCEEE--EEEEEETTEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCcceEE--EEeeECCCCCccEEEEE
Confidence 38999999999999999999865 443 34444667887
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Back Show alignment and structure
Probab=83.15 E-value=3.3 Score=33.98 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=44.1
Q ss_pred CcCCCEEEEeCCCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 38 TIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 38 ~vp~prV~IDN~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
.|+.|.|.... .+...-|-+.-.|+||.|.+|.++|.+.|+||..=.-.|.|+.+
T Consensus 329 ~Vn~p~~~~~~--~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~ 383 (416)
T 3k5p_A 329 AVNFPQVQLPP--RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG 383 (416)
T ss_dssp BSSSCCCCCCC--CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE
T ss_pred eeeCCCcCCCC--CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE
Confidence 34445554432 33456788888999999999999999999999999999999975
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Back Show alignment and structure
Probab=82.99 E-value=6.7 Score=30.34 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=34.5
Q ss_pred CCcEEEEEEeCC-cccHHHHHHHHHHhCCcEEEEEEEEec
Q 033987 52 PDATIVEITFGD-RLGALLDTMNALKNLGLNVVKANVFLD 90 (106)
Q Consensus 52 ~~~TVVEV~a~D-RpGLL~di~~aL~dLgL~I~~A~IsT~ 90 (106)
...-++.+.++| ++|++.++++.|.+.|+||....--+.
T Consensus 99 ~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~ 138 (415)
T 3p96_A 99 PSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD 138 (415)
T ss_dssp CCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES
T ss_pred CCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC
Confidence 456689999999 999999999999999999988877764
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Back Show alignment and structure
Probab=82.92 E-value=1.1 Score=31.77 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=30.9
Q ss_pred CCcEEEEE-EeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 52 PDATIVEI-TFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 52 ~~~TVVEV-~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.+.|.| ...|+||.|.++.+.|.+.|++|..-..++
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~ 51 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV 51 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45677777 358999999999999999999988765543
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Back Show alignment and structure
Probab=81.89 E-value=1.3 Score=36.65 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=33.6
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCceeEEEEEee
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKFAITK 102 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~~DvFYVTD 102 (106)
.-.+.+...||||.|.+|+++|.+.|++|.+-.=.-. ++.......||.
T Consensus 359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th 409 (444)
T 3mtj_A 359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH 409 (444)
T ss_dssp EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred eeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence 3467788899999999999999999999987432211 112356666664
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Back Show alignment and structure
Probab=81.15 E-value=1.5 Score=31.09 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=32.4
Q ss_pred EEEEeCCCCCCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEE
Q 033987 43 KVIIDLDSDPDATIVEITFG---DRLGALLDTMNALKNLGLNVVK 84 (106)
Q Consensus 43 rV~IDN~ss~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~ 84 (106)
.|.++ ++..+|.|.+. ++||.+..+.++|.+.|++|..
T Consensus 88 ~v~~~----~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ 128 (178)
T 2dtj_A 88 NVLYD----DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL 128 (178)
T ss_dssp EEEEE----SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred eEEEe----CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence 45554 46788888887 8999999999999999999987
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Back Show alignment and structure
Probab=81.14 E-value=4.3 Score=33.53 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=40.0
Q ss_pred CCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCceeEEE
Q 033987 50 SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKF 98 (106)
Q Consensus 50 ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~~DvF 98 (106)
..+....+-+.-.||||.+..++..|.+.|+||..-.+.-. |+.++=++
T Consensus 450 ~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i 500 (529)
T 1ygy_A 450 LRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILL 500 (529)
T ss_dssp EESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEE
T ss_pred ecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEE
Confidence 55667788899999999999999999999999999999764 44444343
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 106
d1u8sa1 86
putative transcriptional repressor VC2159 {Vibrio
98.31 d2f06a1 71
Hypothetical protein BT0572 {Bacteroides thetaiota
98.14 d1zpva1 83
UPF0237 protein SP0238 {Streptococcus pneumoniae [
98.1 d1u8sa2 93
putative transcriptional repressor VC2159 {Vibrio
97.92 d1y7pa2 77
Hypothetical protein AF1403, N-terminal domain {Ar
97.48 d2f06a2 70
Hypothetical protein BT0572 {Bacteroides thetaiota
97.4 d1ygya3 78
Phosphoglycerate dehydrogenase, regulatory (C-term
97.22 d1sc6a3 84
Phosphoglycerate dehydrogenase, regulatory (C-term
96.76 d2qmwa2 80
Prephenate dehydratase C-terminal domain {Staphylo
95.12 d2fgca2 78
Acetolactate synthase small subunit, IlvH {Thermot
95.1 d1phza1 97
Phenylalanine hydroxylase N-terminal domain {Rat (
94.27 d2pc6a2 77
Acetolactate synthase small subunit, IlvH {Nitroso
93.53 d2f1fa1 76
Acetolactate synthase small subunit, IlvH {Escheri
93.24 d2cdqa2 91
Aspartokinase {Thale cress (Arabidopsis thaliana)
87.51 d2hmfa2 67
Aspartokinase {Methanococcus jannaschii [TaxId: 21
80.21
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]
Probab=98.31 E-value=1.2e-06 Score=55.61 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=44.5
Q ss_pred CcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEe
Q 033987 53 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT 101 (106)
Q Consensus 53 ~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVT 101 (106)
.+-||.|.+.||||+++++++.|++.|+||...+..+.|+.+.=.+.|.
T Consensus 4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~ 52 (86)
T d1u8sa1 4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52 (86)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence 5678999999999999999999999999999999999999887666654
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.14 E-value=2.8e-06 Score=53.08 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=45.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEeecc
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY 104 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD~~ 104 (106)
||.|.-.||||-|++++++|.+.|+||+..+....+++..=+|-|-|.+
T Consensus 1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~ 49 (71)
T d2f06a1 1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMD 49 (71)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHH
T ss_pred CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHH
Confidence 6889999999999999999999999999999999999999999886643
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.10 E-value=1.1e-05 Score=50.33 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=39.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEE
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI 100 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYV 100 (106)
.||.|.+.||||+++++++.|++.|.||....-.+.++.+.=.+.+
T Consensus 3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v 48 (83)
T d1zpva1 3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV 48 (83)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEE
Confidence 5899999999999999999999999999999888877765444433
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]
Probab=97.92 E-value=1.3e-05 Score=51.30 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=34.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCC----ceeEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS----GKHNKFAI 100 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ge----r~~DvFYV 100 (106)
-|.|.+.||||++++|++.|++.|+||....=.++.. ...+.|+.
T Consensus 8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~ 56 (93)
T d1u8sa2 8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHI 56 (93)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEE
Confidence 3678899999999999999999999998877665432 23445654
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.48 E-value=5e-05 Score=47.64 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=27.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
=++|.+.||||+|.+|+.++++.|.||......+
T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~ 36 (77)
T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL 36 (77)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEE
T ss_pred eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeec
Confidence 4789999999999999999999999999988776
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.40 E-value=0.00027 Score=44.02 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=40.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCceeEEEEEee
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 102 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~DvFYVTD 102 (106)
+.|...||||.|.+++..|.+.|+||..-.+...++..+=.+-|.|
T Consensus 6 isV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~ 51 (70)
T d2f06a2 6 LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD 51 (70)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred EEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence 6789999999999999999999999999999988888776664443
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.22 E-value=0.00044 Score=43.15 Aligned_cols=45 Identities=27% Similarity=0.272 Sum_probs=36.8
Q ss_pred cEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEec--CCceeEEE
Q 033987 54 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKF 98 (106)
Q Consensus 54 ~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~--Ger~~DvF 98 (106)
-+.+-+.-.||||.|..|+++|.+.|+||...++++. |+.+.=++
T Consensus 3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi 49 (78)
T d1ygya3 3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILL 49 (78)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEE
T ss_pred ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEE
Confidence 3567788899999999999999999999999999774 44444333
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00074 Score=42.34 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=33.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCce
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK 94 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~ 94 (106)
-+-+.-.||||.|.+|++.|.+.|+||..-...+.++..
T Consensus 13 rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~ 51 (84)
T d1sc6a3 13 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG 51 (84)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE
T ss_pred EEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCc
Confidence 344557999999999999999999999999999888753
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]
Probab=95.12 E-value=0.013 Score=36.47 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=31.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE-ecCCceeEEEEE
Q 033987 57 VEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI 100 (106)
Q Consensus 57 VEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is-T~Ger~~DvFYV 100 (106)
+-+.-.||||.|+++-+.|++.|+|+.+=.=- ..|....=.|||
T Consensus 5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i 49 (80)
T d2qmwa2 5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV 49 (80)
T ss_dssp EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence 33445699999999999999999998764221 234444667877
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]
Probab=95.10 E-value=0.053 Score=34.10 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=34.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEecCCcee
Q 033987 55 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH 95 (106)
Q Consensus 55 TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT~Ger~~ 95 (106)
-.+.+...|+||+|..++..|+.-|.||.+-.++-..+...
T Consensus 4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~i 44 (78)
T d2fgca2 4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGL 44 (78)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTE
T ss_pred EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCe
Confidence 36788999999999999999999999999988876544433
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.27 E-value=0.019 Score=37.07 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=36.5
Q ss_pred CCCCCcEEEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe---cCCceeEEEEE
Q 033987 49 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL---DSSGKHNKFAI 100 (106)
Q Consensus 49 ~ss~~~TVVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT---~Ger~~DvFYV 100 (106)
......|-|-+...|+||.|+++.+.|++.|+|+.+ |.+ .+....=.|||
T Consensus 11 ~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~--IeSRP~~~~~~~Y~F~i 63 (97)
T d1phza1 11 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTH--IESRPSRLNKDEYEFFT 63 (97)
T ss_dssp CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTS--EEEEECSSCTTEEEEEE
T ss_pred CCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEE--EEeeccCCCCceEEEEE
Confidence 344556777777889999999999999999999764 333 23333456888
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]
Probab=93.53 E-value=0.029 Score=35.32 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=31.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEEe
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL 89 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~IsT 89 (106)
.+.+...|+||.|..++..|+.-|.||.+-.++-
T Consensus 4 tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~ 37 (77)
T d2pc6a2 4 IISLLMENEAGALSRVAGLFSARGYNIESLSVAP 37 (77)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEE
T ss_pred EEEEEEECCccHHHHHHHHHhccCcceEEEEEec
Confidence 4688899999999999999999999999988873
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.11 Score=32.51 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=30.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCcEEEEEEEE
Q 033987 56 IVEITFGDRLGALLDTMNALKNLGLNVVKANVF 88 (106)
Q Consensus 56 VVEV~a~DRpGLL~di~~aL~dLgL~I~~A~Is 88 (106)
.+.+...|+||+|..++..|+.-|.||.+-.++
T Consensus 3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~ 35 (76)
T d2f1fa1 3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVA 35 (76)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEE
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEc
Confidence 467888999999999999999999999998887
>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.51 E-value=0.25 Score=30.95 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCcEEEEEEeC---CcccHHHHHHHHHHhCCcEEEEEE
Q 033987 52 PDATIVEITFG---DRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 52 ~~~TVVEV~a~---DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
.+.++|.|.+. ++||.+..+-.+|.+.|++|..-.
T Consensus 11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is 48 (91)
T d2cdqa2 11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA 48 (91)
T ss_dssp EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence 35788999874 999999999999999999998754
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]
Probab=80.21 E-value=0.72 Score=27.21 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=26.5
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCcEEEEEE
Q 033987 55 TIVEITF---GDRLGALLDTMNALKNLGLNVVKAN 86 (106)
Q Consensus 55 TVVEV~a---~DRpGLL~di~~aL~dLgL~I~~A~ 86 (106)
.+|.|.+ .++||++..+..+|.+.|++|+.-.
T Consensus 2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIs 36 (67)
T d2hmfa2 2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIA 36 (67)
T ss_dssp EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHee
Confidence 3566665 6899999999999999999997543
