Citrus Sinensis ID: 033997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccEEEcEEEccccEEEEEEccEEccccccccEEEEEccEEEcEEEcccccccEEEEEcccccccccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccHcccHHccHHHHHHHHcccccccEEEEccEEEEEcccHHHHEHHccccEEEEEEEHccccEEEEEEEEHcHcccccccccEEEEHHHHHHccc
Coil and Loop (DISEMBL)
maemvgprlysccncrnhvalhddvisksfqgrngraFLFSHamnivvgpkedrqlmTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW
Flexible Loop (DISEMBL)
MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAyeetqkykegkfilekskiakenw
Low Complexity Region (SEG)
MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW
Disordered region (IsUnstruct)
******PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFIL**********
Disordered Region (DISOPRED)
****VGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW
Disordered Region (DISEMBL)
MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW
Disordered Region (DISPRO)
****VGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9T096	106	Protein yippee-like At4g2	yes	no	1.0	1.0	0.801	1e-48
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.924	0.771	0.591	5e-32
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.924	0.771	0.591	5e-32
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.924	0.771	0.591	6e-32
Q65Z56	127	Protein yippee-like 4 OS=	N/A	no	0.924	0.771	0.591	6e-32
Q6NWI4	119	Protein yippee-like 3 OS=	yes	no	0.924	0.823	0.602	1e-31
Q9ESC7	118	Protein yippee-like 1 OS=	no	no	0.924	0.830	0.581	2e-31
O60688	119	Protein yippee-like 1 OS=	no	no	0.924	0.823	0.581	2e-31
Q9DG42	119	Protein yippee-like 1 OS=	N/A	no	0.924	0.823	0.581	2e-31
Q65Z59	119	Protein yippee-like 1 OS=	N/A	no	0.924	0.823	0.581	2e-31

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 85/106 (80%), Positives = 94/106 (88%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MA+ +GPRLYSCCNCRNHV LHDD+ISK+FQGR GRAFLFSHAMNIVVGPKEDR L+TGL
Sbjct: 1   MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVAD+ C DC   LGWKYERAYE +QKYKEGKFI EK+KI KE+W
Sbjct: 61  HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 78/98 (79%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG +GRA+LF+  +N+  GP E R L+TGLH+VAD+F
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C  C+  LGWKYE+A+E +QKYKEGK+I+E S + K+N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDN 124

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 78/98 (79%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG +GRA+LF+  +N+  GP E R L+TGLH+VAD+F
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C  C+  LGWKYE+A+E +QKYKEGK+I+E S + K+N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDN 124

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 78/98 (79%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG +GRA+LF+  +N+  GP E R L+TGLH+VAD+F
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C  C+  LGWKYE+A+E +QKYKEGK+I+E S + K+N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDN 124

Homo sapiens (taxid: 9606)

>sp|Q65Z56|YPEL4_CHLAE Protein yippee-like 4 OS=Chlorocebus aethiops GN=YPEL4 PE=2 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 78/98 (79%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG +GRA+LF+  +N+  GP E R L+TGLH+VAD+F
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C  C+  LGWKYE+A+E +QKYKEGK+I+E S + K+N
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDN 124

Chlorocebus aethiops (taxid: 9534)

>sp|Q6NWI4|YPEL3_DANRE Protein yippee-like 3 OS=Danio rerio GN=ypel3 PE=3 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 77/98 (78%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HDD+ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct: 19  RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C +C   LGWKYE+A+E +QKYKEGKFI+E S + K+N
Sbjct: 79  CENCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKDN 116

May be involved in proliferation and apoptosis in myeloid precursor cells.

Danio rerio (taxid: 7955)

>sp|Q9ESC7|YPEL1_MOUSE Protein yippee-like 1 OS=Mus musculus GN=Ypel1 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 77/98 (78%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Mus musculus (taxid: 10090)

>sp|O60688|YPEL1_HUMAN Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 77/98 (78%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Homo sapiens (taxid: 9606)

>sp|Q9DG42|YPEL1_COTJA Protein yippee-like 1 OS=Coturnix coturnix japonica GN=YPEL1 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 77/98 (78%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

Coturnix coturnix japonica (taxid: 93934)

>sp|Q65Z59|YPEL1_CHLAE Protein yippee-like 1 OS=Chlorocebus aethiops GN=YPEL1 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 77/98 (78%)

Query: 8   RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
           R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct: 19  RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query: 68  CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN 105
           C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N
Sbjct: 79  CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDN 116

May play a role in epithelioid conversion of fibroblasts.

Chlorocebus aethiops (taxid: 9534)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
224053739	106	predicted protein [Populus trichocarpa]	1.0	1.0	0.915	1e-52
255555711	106	fad NAD binding oxidoreductases, putativ	1.0	1.0	0.905	2e-52
115488582	109	Os12g0484700 [Oryza sativa Japonica Grou	1.0	0.972	0.877	8e-52
77555722	106	Yippee-like protein At4g27740, putative	1.0	1.0	0.877	9e-52
242085524	106	hypothetical protein SORBIDRAFT_08g01487	1.0	1.0	0.867	3e-51
357153211	107	PREDICTED: protein yippee-like At4g27745	0.990	0.981	0.876	4e-51
351721698	106	uncharacterized protein LOC100527552 [Gl	1.0	1.0	0.858	1e-50
388509814	106	unknown [Lotus japonicus]	1.0	1.0	0.839	2e-50
225426633	106	PREDICTED: protein yippee-like At4g27745	1.0	1.0	0.886	3e-50
224075199	106	predicted protein [Populus trichocarpa]	1.0	1.0	0.886	3e-50

>gi|224053739|ref|XP_002297955.1| predicted protein [Populus trichocarpa] gi|222845213|gb|EEE82760.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 97/106 (91%), Positives = 102/106 (96%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MAE+VGPRLYSCCNCRNHVALHDDVISK+FQGR+GRAFLFSHAMN++VGPKEDR LMTGL
Sbjct: 1   MAEVVGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNVMVGPKEDRHLMTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVADV CSDCR VLGWKYERAYEETQKYKEGKFILEKSKI KENW
Sbjct: 61  HTVADVSCSDCREVLGWKYERAYEETQKYKEGKFILEKSKIVKENW 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555711|ref|XP_002518891.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223541878|gb|EEF43424.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  209 bits (532), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/106 (90%), Positives = 101/106 (95%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MA +VGPRLYSCCNCRNHVALHDDVISK+FQGR+GRAFLFSHAMN+ VGPKEDRQLMTGL
Sbjct: 1   MAALVGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNMTVGPKEDRQLMTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVADV+CSDC  VLGWKYERAYEETQKYKEGKFILEKSKI KENW
Sbjct: 61  HTVADVYCSDCHEVLGWKYERAYEETQKYKEGKFILEKSKIVKENW 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115488582|ref|NP_001066778.1| Os12g0484700 [Oryza sativa Japonica Group] gi|113649285|dbj|BAF29797.1| Os12g0484700 [Oryza sativa Japonica Group]

 Score =  207 bits (526), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 93/106 (87%), Positives = 101/106 (95%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MAE+VGPR+YSCCNCRNHV LHDD+ISK+FQGRNGRAFLFSHAMN+VVG KEDRQLMTGL
Sbjct: 4   MAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGL 63

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVAD++C+DCR VLGWKYERAYEETQKYKEGKFI EKSKI KENW
Sbjct: 64  HTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 109

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77555722|gb|ABA98518.1| Yippee-like protein At4g27740, putative [Oryza sativa Japonica Group] gi|125536637|gb|EAY83125.1| hypothetical protein OsI_38341 [Oryza sativa Indica Group] gi|125579350|gb|EAZ20496.1| hypothetical protein OsJ_36103 [Oryza sativa Japonica Group] gi|215768213|dbj|BAH00442.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  207 bits (526), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 93/106 (87%), Positives = 101/106 (95%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MAE+VGPR+YSCCNCRNHV LHDD+ISK+FQGRNGRAFLFSHAMN+VVG KEDRQLMTGL
Sbjct: 1   MAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVAD++C+DCR VLGWKYERAYEETQKYKEGKFI EKSKI KENW
Sbjct: 61  HTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 106

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242085524|ref|XP_002443187.1| hypothetical protein SORBIDRAFT_08g014870 [Sorghum bicolor] gi|241943880|gb|EES17025.1| hypothetical protein SORBIDRAFT_08g014870 [Sorghum bicolor]

 Score =  205 bits (521), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/106 (86%), Positives = 100/106 (94%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MAE+VGPR+YSCC CRNHV LHDD+ISK+FQGRNGRAFLFSHAMN+VVG KEDRQLMTGL
Sbjct: 1   MAELVGPRVYSCCTCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVAD++C+DCR VLGWKYERAYEETQKYKEGKFI EKSKI KENW
Sbjct: 61  HTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 106

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357153211|ref|XP_003576376.1| PREDICTED: protein yippee-like At4g27745-like [Brachypodium distachyon]

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 100/105 (95%)

Query: 2   AEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLH 61
           AE+VGPR+YSCCNCRNHV LHDDV+SK+FQGRNGRAFLFSHAMN+VVG KEDRQLMTGLH
Sbjct: 3   AELVGPRVYSCCNCRNHVCLHDDVVSKAFQGRNGRAFLFSHAMNVVVGAKEDRQLMTGLH 62

Query: 62  TVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           TVAD++CS+CR VLGWKYERAYEETQKYKEGKFI EKSKI KENW
Sbjct: 63  TVADIYCSECREVLGWKYERAYEETQKYKEGKFIFEKSKIVKENW 107

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721698|ref|NP_001237730.1| uncharacterized protein LOC100527552 [Glycine max] gi|255632600|gb|ACU16650.1| unknown [Glycine max]

 Score =  203 bits (516), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/106 (85%), Positives = 99/106 (93%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MAE++GPRLYSC NCRNHV+LHDD+ISK+F GRNGRAFLFSHAMNIV GPKEDR L+TGL
Sbjct: 1   MAELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVAGPKEDRHLLTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVADV+C DCR VLGWKYERAYE +QKYKEGKFILEKSKIAKENW
Sbjct: 61  HTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIAKENW 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509814|gb|AFK42973.1| unknown [Lotus japonicus]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 89/106 (83%), Positives = 99/106 (93%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           M E++GPRLYSCCNCRNHV+LHDD+ISK+FQG+NGRAFLFSHAMN+V GPKEDR L+TGL
Sbjct: 1   MGELIGPRLYSCCNCRNHVSLHDDIISKAFQGKNGRAFLFSHAMNVVTGPKEDRHLLTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVADV+C DCR VLGWKYERAYE +QKYKEGKFILEKSKI KENW
Sbjct: 61  HTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKENW 106

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426633|ref|XP_002280984.1| PREDICTED: protein yippee-like At4g27745 isoform 1 [Vitis vinifera] gi|225426635|ref|XP_002280996.1| PREDICTED: protein yippee-like At4g27745 isoform 2 [Vitis vinifera] gi|147811930|emb|CAN65880.1| hypothetical protein VITISV_028720 [Vitis vinifera] gi|297742419|emb|CBI34568.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 99/106 (93%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           M E+VGPRLYSCCNCRNHVALHDDVISK+FQGR+GRAFLFSHAMN+ VGPKEDR LMTGL
Sbjct: 1   MGEVVGPRLYSCCNCRNHVALHDDVISKAFQGRHGRAFLFSHAMNVNVGPKEDRHLMTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVADVFC DC  VLGWKYERAYEE+QKYKEGKFILEKSKI KENW
Sbjct: 61  HTVADVFCCDCCQVLGWKYERAYEESQKYKEGKFILEKSKIVKENW 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075199|ref|XP_002304574.1| predicted protein [Populus trichocarpa] gi|222842006|gb|EEE79553.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 100/106 (94%)

Query: 1   MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
           MAE+VGPRLYSCC+CRNHVALHDDVISK+FQGR+GRAFLFSHA+NI+VGPKEDRQLMTGL
Sbjct: 1   MAEVVGPRLYSCCHCRNHVALHDDVISKAFQGRHGRAFLFSHALNIMVGPKEDRQLMTGL 60

Query: 61  HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
           HTVADV CSDCR VLGWKYERAYEETQKYKEGKFILE   I KENW
Sbjct: 61  HTVADVDCSDCRGVLGWKYERAYEETQKYKEGKFILENLNIVKENW 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	1.0	1.0	0.801	3e-46
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.952	0.782	0.613	1.3e-31
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.933	0.779	0.59	1.6e-31
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.933	0.779	0.59	1.6e-31
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.933	0.779	0.59	1.6e-31
ZFIN|ZDB-GENE-030516-4	119	ypel3 "yippee-like 3" [Danio r	0.933	0.831	0.6	3.3e-31
UNIPROTKB|A6QLE8	119	YPEL1 "YPEL1 protein" [Bos tau	0.933	0.831	0.58	5.4e-31
UNIPROTKB|E2RE07	119	YPEL1 "Uncharacterized protein	0.933	0.831	0.58	5.4e-31
UNIPROTKB|O60688	119	YPEL1 "Protein yippee-like 1"	0.933	0.831	0.58	5.4e-31
UNIPROTKB|F1RL01	119	YPEL1 "Uncharacterized protein	0.933	0.831	0.58	5.4e-31

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 85/106 (80%), Positives = 94/106 (88%)

Query:     1 MAEMVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL 60
             MA+ +GPRLYSCCNCRNHV LHDD+ISK+FQGR GRAFLFSHAMNIVVGPKEDR L+TGL
Sbjct:     1 MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query:    61 HTVADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKENW 106
             HTVAD+ C DC   LGWKYERAYE +QKYKEGKFI EK+KI KE+W
Sbjct:    61 HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKEDW 106

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 62/101 (61%), Positives = 74/101 (73%)

Query:     4 MVGPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTV 63
             + GP +  C NC+ H+ LHD +ISK FQGR+G AFLF    NI VGP EDR L TG+H V
Sbjct:     9 LTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRTLTTGMHIV 68

Query:    64 ADVFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKE 104
             AD++C DC   LGWKYE A EE+QKYK GK+ILEK+KI KE
Sbjct:    69 ADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEKAKIQKE 109

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 59/100 (59%), Positives = 79/100 (79%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HD++ISKSFQG +GRA+LF+  +N+  GP E R L+TGLH+VAD+F
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C  C+  LGWKYE+A+E +QKYKEGK+I+E S + K+N W
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGW 126

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 59/100 (59%), Positives = 79/100 (79%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HD++ISKSFQG +GRA+LF+  +N+  GP E R L+TGLH+VAD+F
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C  C+  LGWKYE+A+E +QKYKEGK+I+E S + K+N W
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGW 126

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 59/100 (59%), Positives = 79/100 (79%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HD++ISKSFQG +GRA+LF+  +N+  GP E R L+TGLH+VAD+F
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C  C+  LGWKYE+A+E +QKYKEGK+I+E S + K+N W
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIEMSHMVKDNGW 126

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-030516-4 ypel3 "yippee-like 3" [Danio rerio (taxid:7955)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 60/100 (60%), Positives = 78/100 (78%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HDD+ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct:    19 RRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIY 78

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C +C   LGWKYE+A+E +QKYKEGKFI+E S + K+N W
Sbjct:    79 CENCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKDNGW 118

GO:0007420 "brain development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|A6QLE8 YPEL1 "YPEL1 protein" [Bos taurus (taxid:9913)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 58/100 (58%), Positives = 78/100 (78%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|E2RE07 YPEL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 58/100 (58%), Positives = 78/100 (78%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|O60688 YPEL1 "Protein yippee-like 1" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 58/100 (58%), Positives = 78/100 (78%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct:    19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0031641 "regulation of myelination" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RL01 YPEL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 58/100 (58%), Positives = 78/100 (78%)

Query:     8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVF 67
             R YSC +CR H+A HD++ISKSFQG  GRA+LF+  +N+  GP E+R L+TGLH VAD++
Sbjct:    19 RTYSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIY 78

Query:    68 CSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKEN-W 106
             C +C+  LGWKYE A+E +QKYKEGKFI+E + + K+N W
Sbjct:    79 CENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGW 118

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65Z59	YPEL1_CHLAE	No assigned EC number	0.5816	0.9245	0.8235	N/A	no
Q65Z58	YPEL2_CHLAE	No assigned EC number	0.5714	0.9245	0.8235	N/A	no
Q65Z54	YPEL3_ORYLA	No assigned EC number	0.5918	0.9245	0.8235	N/A	no
Q65Z57	YPEL3_CHLAE	No assigned EC number	0.5816	0.9245	0.8235	N/A	no
Q65Z93	YPEL4_MOUSE	No assigned EC number	0.5918	0.9245	0.7716	yes	no
Q9U3G6	YPL1_CAEEL	No assigned EC number	0.5445	0.9528	0.7372	yes	no
Q96NS1	YPEL4_HUMAN	No assigned EC number	0.5918	0.9245	0.7716	yes	no
Q9T096	YIPL6_ARATH	No assigned EC number	0.8018	1.0	1.0	yes	no
Q6NWI4	YPEL3_DANRE	No assigned EC number	0.6020	0.9245	0.8235	yes	no
Q5XID5	YPEL4_RAT	No assigned EC number	0.5918	0.9245	0.7716	yes	no
Q9W2X7	YPL1_DROME	No assigned EC number	0.5816	0.9245	0.8596	yes	no
Q2YDI3	YPEL2_BOVIN	No assigned EC number	0.5714	0.9245	0.8235	yes	no
Q9DG42	YPEL1_COTJA	No assigned EC number	0.5816	0.9245	0.8235	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I0745 hypothetical protein (106 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	2e-56

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  169 bits (431), Expect = 2e-56
 Identities = 63/99 (63%), Positives = 79/99 (79%)

Query: 6   GPRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVAD 65
           G R+YSC +C+ H+ALH D+ISKSF GR+GRA+LF+  +N+V G  EDRQ++TGLHTV D
Sbjct: 11  GGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQMLTGLHTVRD 70

Query: 66  VFCSDCRVVLGWKYERAYEETQKYKEGKFILEKSKIAKE 104
           +FC  C   LGWKYE AYEE+QKYKEGKFILE++ I K 
Sbjct: 71  IFCVGCGTTLGWKYEFAYEESQKYKEGKFILERALITKI 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	100.0
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	96.03
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.9
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.68
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.39
PRK05508	119	methionine sulfoxide reductase B; Provisional	93.22
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	91.28
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	89.62
COG0229	140	Conserved domain frequently associated with peptid	85.97
PF14976	150	FAM72: FAM72 protein	84.95
KOG0856	146	consensus Predicted pilin-like transcription facto	81.22

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=7.3e-52  Score=295.44  Aligned_cols=104  Identities=59%  Similarity=1.116  Sum_probs=99.6

Q ss_pred             cccC-CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033997            3 EMVG-PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYER   81 (106)
Q Consensus         3 ~l~g-~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   81 (106)
                      +|++ ++.|+|++|+||||+++|||||+|+|++|+||||++|+||+.|+.|+|.|+||+|+|+||+|+.|++.|||||+.
T Consensus         8 ~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~~GWkYe~   87 (122)
T KOG3399|consen    8 MLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTGLGWKYEH   87 (122)
T ss_pred             HhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCCcceeeee
Confidence            4555 368999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccccccceEEEEeccccccC-C
Q 033997           82 AYEETQKYKEGKFILEKSKIAKEN-W  106 (106)
Q Consensus        82 A~e~sqkYKEGkfIlE~~~i~~~~-w  106 (106)
                      |||+||||||||||||+++|.+++ |
T Consensus        88 a~e~sQkyKEGk~ilE~~~i~~~~g~  113 (122)
T KOG3399|consen   88 AYEKSQKYKEGKFILELAEIFKPEGW  113 (122)
T ss_pred             ccCchhhhcCcchHHHHHHhcCCCCc
Confidence            999999999999999999999976 5

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=100.00  E-value=2.4e-34  Score=194.30  Aligned_cols=89  Identities=56%  Similarity=1.057  Sum_probs=85.2

Q ss_pred             eEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceec----EEEeeeecccCCCceeeEEEeecc
Q 033997            9 LYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGL----HTVADVFCSDCRVVLGWKYERAYE   84 (106)
Q Consensus         9 ~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~----h~V~DI~C~~C~~~lGWkY~~A~e   84 (106)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+||+|++|++.|||||+.|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7778888999999999    999999999999999999999999


Q ss_pred             cccccccceEEEEeccccc
Q 033997           85 ETQKYKEGKFILEKSKIAK  103 (106)
Q Consensus        85 ~sqkYKEGkfIlE~~~i~~  103 (106)
                      + |+||||+||||++.|..
T Consensus        77 ~-~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASISS   94 (96)
T ss_pred             h-HhhhCCEEEEEhhHEEE
Confidence            9 99999999999998863

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=96.03  E-value=0.0031  Score=44.79  Aligned_cols=86  Identities=15%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             eEEcccCcCCCCCCCCeeeeeecCCC----ceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeecc
Q 033997            9 LYSCCNCRNHVALHDDVISKSFQGRN----GRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYE   84 (106)
Q Consensus         9 ~y~C~~C~thLa~~~~liSk~f~G~~----G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e   84 (106)
                      .+.|++|.+.++..+||-.-  .++|    .+.  |...+.+...|.+.....-+.+....|+|..|+..+|-.+..---
T Consensus         4 ~llC~kC~~~~C~~~DIr~i--e~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~   79 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKI--ENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGV   79 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEE--TTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTE
T ss_pred             EEECCCCCceeEchhheEEe--cCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCc
Confidence            48899999999999998764  1111    222  335666666666544445588899999999999999987654332


Q ss_pred             cccccccceEEEEe
Q 033997           85 ETQKYKEGKFILEK   98 (106)
Q Consensus        85 ~sqkYKEGkfIlE~   98 (106)
                      +==-.|.-.|+++.
T Consensus        80 ~LP~L~iksfvv~~   93 (123)
T PF11648_consen   80 ELPCLKIKSFVVEL   93 (123)
T ss_dssp             EEEEE-GGGEEEEE
T ss_pred             cccEEEeeeeeeee
Confidence            22334555566443

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.90  E-value=0.021  Score=41.15  Aligned_cols=72  Identities=21%  Similarity=0.409  Sum_probs=44.9

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeeccc
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEE   85 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e~   85 (106)
                      .-+|.|+.|+++|=+++.    -|....|=.-.+..+..-.+...+|..  -|+.. ..|.|..|+..||=-......+
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~~R-~Ev~C~~Cg~HLGHVF~DGp~~  106 (124)
T PF01641_consen   35 EGIYVCAVCGTPLFSSDT----KFDSGCGWPSFWQPIPGDAVKEREDFS--HGMVR-TEVRCARCGSHLGHVFDDGPPP  106 (124)
T ss_dssp             SEEEEETTTS-EEEEGGG----EETSSSSSSEESSCSSTTSEEEEEEEC--TSSEE-EEEEETTTCCEEEEEESTSSTT
T ss_pred             CEEEEcCCCCCccccCcc----cccCCcCCccccCcCChHHEEEecccc--CCceE-EEEEecCCCCccccEeCCCCCC
Confidence            348999999999987653    566555654445444332333333332  24544 4789999999999876655543

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.68  E-value=0.034  Score=40.64  Aligned_cols=66  Identities=20%  Similarity=0.462  Sum_probs=42.3

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecc-cccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHA-MNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v-~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|+++|-++++    -|.-..|=.-.+..+ -|. +...+|+.  -|+.. ..|.|..|+..||=-..
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~-V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~  104 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEV-VAYERDES--HGMIR-TEVRCRNCDAHLGHVFD  104 (134)
T ss_pred             CeEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCc-eEEeecCC--CCcEE-EEEEecCCCCccCcccC
Confidence            347999999999988765    455555544444444 222 22333332  24444 47999999999997554

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.39  E-value=0.035  Score=40.97  Aligned_cols=68  Identities=19%  Similarity=0.394  Sum_probs=43.4

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYER   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|.++|=++++    -|.-..|=.-.+..+-.-.+...+|+.  -|+.. ..|.|..|+..||=-...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~D  108 (142)
T PRK00222         41 KGIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDTS--HGMVR-TEVRCANCDSHLGHVFPD  108 (142)
T ss_pred             CeEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeeccC--CCceE-EEEEeCCCCCccCcccCC
Confidence            348999999999988754    566666655555554322222233332  23322 478999999999976543

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=93.22  E-value=0.097  Score=37.66  Aligned_cols=64  Identities=22%  Similarity=0.438  Sum_probs=42.5

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|.++|=++++    -|.-..|=.-.+..+-|. +...+|..   | + =..|.|..|+..||=-..
T Consensus        31 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~-v~~~~D~~---~-~-RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         31 KGTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKGA-VKRIPDAD---G-R-RTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             CeEEEecCCCCccccccc----cccCCCCCcccCcccccc-eEEEecCC---C-c-EEEEEeCCCCCccCcccC
Confidence            348999999999988765    566666654445554332 33334443   2 2 357999999999997443

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=91.28  E-value=0.16  Score=41.10  Aligned_cols=64  Identities=22%  Similarity=0.439  Sum_probs=42.1

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|+++|=++++    -|.-.+|=.-.++.+-|-+.- .++..   |+  =..|.|..|++.||--..
T Consensus        34 ~G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~~-~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         34 KGVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVKR-LPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             CcEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccEE-EEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            348999999999988764    455555544446555443222 22222   32  478999999999997554

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=89.62  E-value=0.34  Score=42.12  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYER   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|+++|=+++    .-|....|=.-.+..+-+-.+...+|.+  -|++. ..|.|..|++.||--...
T Consensus       416 ~G~y~c~~c~~pLf~s~----~Kf~sg~GWPsF~~~i~~~~v~~~~d~s--~g~~R-~Ev~c~~c~~HLGHvf~d  483 (521)
T PRK14018        416 PGIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKVVTEHDDFS--YNMRR-TEVRSRAADSHLGHVFPD  483 (521)
T ss_pred             CEEEEecCCCCccccCc----ccccCCCCCcccCcccCcCceEEeeccC--CCceE-EEEEECCCCCcCCcccCC
Confidence            44899999999998885    3566666655545544322233333332  24444 379999999999976544

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=85.97  E-value=1.1  Score=33.12  Aligned_cols=64  Identities=25%  Similarity=0.457  Sum_probs=42.8

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceee
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGW   77 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGW   77 (106)
                      +-+|.|+.|..+|=++++    -|.-..|=--.+.-+..-.+...+|+  .-|++.+ .|.|..|++.||=
T Consensus        40 ~GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~Rt-EVrc~~c~sHLGH  103 (140)
T COG0229          40 KGIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVRT-EVRCANCDSHLGH  103 (140)
T ss_pred             CceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEEE-EEEecCCCCcccc
Confidence            348999999999988765    45555554444444444344444443  3455554 6899999999996

>PF14976 FAM72: FAM72 protein

Probab=84.95  E-value=2  Score=32.15  Aligned_cols=62  Identities=19%  Similarity=0.400  Sum_probs=39.3

Q ss_pred             eEEcccCcCCCCCCCCeeeeeecCCCceEEEeeccccccc----CCccceeeceec--------EEEeeeecccCCCcee
Q 033997            9 LYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVV----GPKEDRQLMTGL--------HTVADVFCSDCRVVLG   76 (106)
Q Consensus         9 ~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~----g~~~~r~m~TG~--------h~V~DI~C~~C~~~lG   76 (106)
                      +..|+.|.+-|+...           =||-|..+ .|+..    -||....-.+|.        =.++|+-|.+|+..||
T Consensus        15 ~L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~vG   82 (150)
T PF14976_consen   15 ILCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIVG   82 (150)
T ss_pred             EEECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCeee
Confidence            478999998887542           24555544 33332    222222323333        3899999999999999


Q ss_pred             eEEEee
Q 033997           77 WKYERA   82 (106)
Q Consensus        77 WkY~~A   82 (106)
                      +.....
T Consensus        83 YhV~~P   88 (150)
T PF14976_consen   83 YHVVVP   88 (150)
T ss_pred             eEEEEE
Confidence            887654

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=81.22  E-value=1.4  Score=32.81  Aligned_cols=67  Identities=19%  Similarity=0.383  Sum_probs=39.0

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|.++|-++.    .-|.-..|=--.|+.+-+=.+-..+|.+  -|.+ =.+|.|..|+..||--.+
T Consensus        52 ~GvY~C~~C~~pLykS~----tKfdsgcGWPAF~e~i~~gaI~r~~d~s--~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   52 EGVYVCAGCGTPLYKST----TKFDSGCGWPAFFEAIGPGAITRTPDNS--RGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CceEEEeecCCcccccc----ccccCCCCCchhhhccCCCceeeccccC--CCCc-ceEEEEeecCCceeeeec
Confidence            45899999999998764    3565555543334443111111111211  1122 347899999999997554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
3ga3_A	133	Interferon-induced helicase C domain-containing pr	94.56
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	94.51
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	93.68
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	93.27
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	92.71
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	92.64
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	92.15
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	92.11
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	92.09
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	91.46
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	91.26
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	89.73
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	87.49
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	87.05
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	84.24

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=94.56  E-value=0.034  Score=39.56  Aligned_cols=87  Identities=11%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             eEEcccCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeecccc
Q 033997            9 LYSCCNCRNHVALHDDVISK--SFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYEET   86 (106)
Q Consensus         9 ~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e~s   86 (106)
                      .+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+..-+...+. ..+...-..|.|. |+..+|-....---+=
T Consensus        12 kllCrkC~~~~C~g~DIR~ie~~HhVnv~p~F--~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~L   87 (133)
T 3ga3_A           12 TFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF--KELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLDL   87 (133)
T ss_dssp             EEEETTTCCEEEEGGGCEEETTTEEECCCTGG--GGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEEE
T ss_pred             EEEccCCCeeEEeccceEEeccceEEeeChhh--eeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEeccccC
Confidence            48999999999999997433  2111112221  233434322222233 4667888899999 9999997665433333


Q ss_pred             cccccceEEEEec
Q 033997           87 QKYKEGKFILEKS   99 (106)
Q Consensus        87 qkYKEGkfIlE~~   99 (106)
                      =-.|.-.|++|-.
T Consensus        88 P~LkIksFVve~~  100 (133)
T 3ga3_A           88 PCLKIRNFVVVFK  100 (133)
T ss_dssp             EEECGGGEEEEET
T ss_pred             ceEEEEEEEEEcC
Confidence            3456677777753

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=94.51  E-value=0.018  Score=41.54  Aligned_cols=92  Identities=17%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             CceEEcccCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEeecc
Q 033997            7 PRLYSCCNCRNHVALHDDVISK--SFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERAYE   84 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A~e   84 (106)
                      .-.+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+..+|..-.....+...-..|.|..|+..+|-....---
T Consensus        11 ~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~~   88 (145)
T 3eqt_A           11 HVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNF--SNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSV   88 (145)
T ss_dssp             GCEEEETTTCCEEEEGGGEEEETTTEEEECCGGG--GGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETTE
T ss_pred             heEEECCCCCeeEEeccceEEeccceEEeeChhh--eeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEeccc
Confidence            3459999999999999997433  1110111111  23333322322211113455677889999999999976654433


Q ss_pred             cccccccceEEEEecc
Q 033997           85 ETQKYKEGKFILEKSK  100 (106)
Q Consensus        85 ~sqkYKEGkfIlE~~~  100 (106)
                      +==-.|.-.|++|-..
T Consensus        89 ~LP~LkIksFVve~~~  104 (145)
T 3eqt_A           89 KLPVLKVRSMLLETPQ  104 (145)
T ss_dssp             EEEEECGGGEEEEETT
T ss_pred             cCceEeEEEEEEEcCC
Confidence            3444677778887643

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=93.68  E-value=0.032  Score=39.00  Aligned_cols=89  Identities=22%  Similarity=0.344  Sum_probs=54.9

Q ss_pred             CCceEEcccCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCCceeeEEEe
Q 033997            6 GPRLYSCCNCRNHVALHDDVISK--SFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCS--DCRVVLGWKYER   81 (106)
Q Consensus         6 g~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~   81 (106)
                      |+..+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+...+. .+. .-+.++-..|.|.  .|+..+|-....
T Consensus         2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   77 (121)
T 3lrr_A            2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY   77 (121)
T ss_dssp             CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEE
T ss_pred             CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEe
Confidence            56779999999999999997432  1111111111  22333322222 222 2356778889999  999999976654


Q ss_pred             ecccccccccceEEEEe
Q 033997           82 AYEETQKYKEGKFILEK   98 (106)
Q Consensus        82 A~e~sqkYKEGkfIlE~   98 (106)
                      ---+==-.|.-.|++|-
T Consensus        78 k~~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           78 KTFEIPVIKIESFVVED   94 (121)
T ss_dssp             TTEEEEEECGGGEEEEE
T ss_pred             ccccCceEEEEEEEEEe
Confidence            43334456777788876

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=93.27  E-value=0.11  Score=37.32  Aligned_cols=80  Identities=20%  Similarity=0.396  Sum_probs=52.3

Q ss_pred             CceEEcccCcCCCCCCCCe----------eeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCCc
Q 033997            7 PRLYSCCNCRNHVALHDDV----------ISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCS--DCRVV   74 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~l----------iSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~   74 (106)
                      .-.+.|++|.+.+++.+||          +.+.|.          ..+.+..-+...  ..-+...-..|+|.  .|+..
T Consensus        25 ~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~k--~f~d~~~~g~I~C~~~~Cg~~   92 (145)
T 2qfd_A           25 NKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKPK--QFSSFEKRAKIFCARQNCSHD   92 (145)
T ss_dssp             CCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSCC--CCSSEEEEEEEEECSTTTCCE
T ss_pred             ceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcccc--hhhceeCCceEEeCCcccCcc
Confidence            3459999999999999998          444554          222222111111  14445677899999  99999


Q ss_pred             eeeEEEeecccccccccceEEEEe
Q 033997           75 LGWKYERAYEETQKYKEGKFILEK   98 (106)
Q Consensus        75 lGWkY~~A~e~sqkYKEGkfIlE~   98 (106)
                      +|-.-.+---+-=-.|.-.|+||.
T Consensus        93 WG~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           93 WGIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEEETTEEEEEECGGGEEEEC
T ss_pred             hhceEEEccccCceEEEEEEEEEe
Confidence            987654433334456777888875

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=92.71  E-value=0.044  Score=39.54  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=42.3

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYER   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|.++|=++++    -|....|=.-.+.-+-+ .+...+|++  -|+.. ..|.|..|+..||=-...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCC
Confidence            347999999999987764    45555554443444433 333334432  24432 368999999999975543

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=92.64  E-value=0.07  Score=37.61  Aligned_cols=64  Identities=14%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             ceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEE
Q 033997            8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKY   79 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY   79 (106)
                      -+|.|+.|.++|=++++=    |....|=.-.++.+-.-.+-..+++.   |.. ...|.|..|+..||=-.
T Consensus        19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~~---~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEKN---RPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECSS---STT-CEEEECTTTTCCCEEEC
T ss_pred             EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEeccC---Cce-EEEEEEecCCCccCCcc
Confidence            489999999999888763    54444433323333211111122221   211 35799999999999643

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=92.15  E-value=0.08  Score=37.47  Aligned_cols=89  Identities=20%  Similarity=0.329  Sum_probs=51.3

Q ss_pred             CCceEEcccCcCCCCCCCCeeee--eecCCCceEEEeecccccccCCccceeeceecEEEeeeecc--cCCCceeeEEEe
Q 033997            6 GPRLYSCCNCRNHVALHDDVISK--SFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCS--DCRVVLGWKYER   81 (106)
Q Consensus         6 g~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~lGWkY~~   81 (106)
                      |...+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+..-+. .+. .-+.+.-..|.|.  .|+..+|-....
T Consensus         4 ~~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   79 (131)
T 4a2v_A            4 GQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKY   79 (131)
T ss_dssp             -CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEE
T ss_pred             cceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEee
Confidence            45679999999999999997332  1111111111  12223322221 222 2356778889999  999998875543


Q ss_pred             eccc-ccccccceEEEEe
Q 033997           82 AYEE-TQKYKEGKFILEK   98 (106)
Q Consensus        82 A~e~-sqkYKEGkfIlE~   98 (106)
                      ---+ ==-.|.-.|++|-
T Consensus        80 k~~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           80 LTFDNLPVIKIKSFVMES   97 (131)
T ss_dssp             TTEEEEEEECGGGEEECC
T ss_pred             cCcccCceEeEEEEEEEe
Confidence            2211 2246677777775

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=92.11  E-value=0.08  Score=38.23  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=41.9

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYER   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|.++|=++++    -|....|=.-.+.-+-.-.+...+|+++  |+.. ..|.|..|+..||=-...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s~--gm~R-tEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           41 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFSY--NMRR-TEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEET--TEEE-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCCC--CcEE-EEEEeCCCCCccCceeCC
Confidence            348999999999877653    4555556544444432211222334332  4332 478999999999975543

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=91.46  E-value=0.062  Score=39.50  Aligned_cols=66  Identities=23%  Similarity=0.457  Sum_probs=41.3

Q ss_pred             ceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      -+|.|+.|.++|=++++    -|....|=.-.++-+-+-.+...+|+.  -|+. -..|.|..|+..||=-..
T Consensus        72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGMT-RVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGCC-EEEEEETTTCCEEEEEES
T ss_pred             eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCcE-EEEEEeCCCCCccCcccC
Confidence            48999999999977764    455555654444444322222333332  2442 446899999999997553

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=91.26  E-value=0.076  Score=36.42  Aligned_cols=65  Identities=15%  Similarity=0.341  Sum_probs=38.8

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEE
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKY   79 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY   79 (106)
                      +-+|.|+.|.++|=++++    -|....|=.-.+.-+-.-.+...+|..   ++ .-..|.|..|+..||=-.
T Consensus        11 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~~---~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           11 PGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEHN---RS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECTT---ST-TEEEEEETTTCCEEEEEE
T ss_pred             CEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecCC---CC-CEEEEEeCCCCCccCccc
Confidence            347999999999877663    455555554444433211111112211   11 235899999999999755

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=89.73  E-value=0.069  Score=38.76  Aligned_cols=67  Identities=21%  Similarity=0.528  Sum_probs=41.8

Q ss_pred             ceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEe
Q 033997            8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYER   81 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~   81 (106)
                      -+|.|+.|.++|=++++    -|....|=.-.+.-+-.-.+...+|+.  -|+.. ..|.|..|+..||--...
T Consensus        60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMVR-CEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSCE-EEEEETTEEEEEEEEEEC
T ss_pred             EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCceE-EEEEeCCCCCcCCcccCC
Confidence            48999999999877753    465556644444444321222333332  23332 468999999999976543

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=87.49  E-value=0.07  Score=38.88  Aligned_cols=66  Identities=20%  Similarity=0.415  Sum_probs=38.0

Q ss_pred             ceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      -+|.|+.|.++|=++++    -|....|=--.+.-+-.-.+...+|.+  -|+.. ..|.|..|+..||=-..
T Consensus        49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~  114 (154)
T 3hcj_A           49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMIR-TEIVCARCDSHLGHVFP  114 (154)
T ss_dssp             EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTSC-EEEEETTTCCEEEEEES
T ss_pred             EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCceE-EEEEeCCCCCccCCccC
Confidence            48999999999977664    344444433333332211111122221  13321 47899999999997554

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=87.05  E-value=0.2  Score=40.00  Aligned_cols=67  Identities=13%  Similarity=0.144  Sum_probs=40.6

Q ss_pred             CceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|.++|=++++    -|....|=--.+.-+-.-.+...+|+++  |+. =..|.|..|+..||=-..
T Consensus       207 ~G~Y~c~~cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~-RtEv~c~~c~~HLGHVF~  273 (313)
T 3e0m_A          207 EGIYVDITTGEPLFFAKD----KFASGCGWPSFSRPLSKELIHYYKDLSH--GME-RIEVRSRSGSAHLGHVFT  273 (313)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSGGGEEEEEECCT--TCC-EEEEEESSSCCEEEEEES
T ss_pred             CeEEEecCCCccccCCCc----cccCCCCCcccCcccCCCceEEeecCCC--CcE-EEEEECCCCCCccCcccC
Confidence            348999999999877653    4555555444344332111222233321  443 247899999999997554

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=84.24  E-value=0.25  Score=35.46  Aligned_cols=67  Identities=16%  Similarity=0.347  Sum_probs=38.6

Q ss_pred             ceEEcccCcCCCCCCCCeeeeeecCCCceEEEeeccc-------ccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAM-------NIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~-------Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      -+|.|+.|.++|=++++    -|....|=.-.+.-+.       .-.+...+|++  -|+. =..|.|..|+..||=-+.
T Consensus        36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  108 (143)
T 2l1u_A           36 GMYHCVCCDSPLFSSEK----KYCSGTGWPSFSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVFP  108 (143)
T ss_dssp             EEEEESSSSCEEEEGGG----BCTTTTCCSBBSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEEC
T ss_pred             eEEEeCCCCCeeecCcc----cccCCCCChhhchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCcccC
Confidence            47999999999877754    4554445433233221       00111122221  2333 246899999999997654


Q ss_pred             e
Q 033997           81 R   81 (106)
Q Consensus        81 ~   81 (106)
                      .
T Consensus       109 D  109 (143)
T 2l1u_A          109 D  109 (143)
T ss_dssp             C
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	90.73
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	89.08

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=90.73  E-value=0.046  Score=37.56  Aligned_cols=68  Identities=12%  Similarity=0.113  Sum_probs=40.4

Q ss_pred             ceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEEee
Q 033997            8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYERA   82 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~~A   82 (106)
                      -+|.|+.|.++|=.+++    -|.-..|=.-.++.+-+-.+....+..  -|+-. ..|.|..|+..||=-....
T Consensus        41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~s--~gm~R-~Ev~C~~Cg~HLGHVF~DG  108 (144)
T d1l1da_          41 GIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--FNMRR-TEVRSRAADSHLGHVFPDG  108 (144)
T ss_dssp             EEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCS
T ss_pred             CceEeccccceeeehhh----cccCCccceeeccccccccccceeccc--ccccc-eeeEecCCCCccCcccCCC
Confidence            48999999999987654    355555533334444332222222211  12222 3789999999999755443

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.08  E-value=0.062  Score=36.86  Aligned_cols=65  Identities=18%  Similarity=0.194  Sum_probs=38.3

Q ss_pred             ceEEcccCcCCCCCCCCeeeeeecCCCceEEEeecccccccCCccceeeceecEEEeeeecccCCCceeeEEE
Q 033997            8 RLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE   80 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~lGWkY~   80 (106)
                      -+|.|+.|+++|=++++    -|.-..|=.-.++.+-+-+. ..+|..  -|+ .=..|.|..|+..||=-..
T Consensus        40 G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          40 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             EEEEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEE
T ss_pred             ceEEeccccchhhhhhh----hhccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCC
Confidence            47999999999987765    35444443333443332221 122221  111 1257899999999996553