Citrus Sinensis ID: 034008

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MQSDRSDSRGLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
mqsdrsdsrglntqrtqsltgsgdtrgkHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLrnveaipdpllpitngplnplwdrwferpkesrgcrcwil
Flexible Loop (DISEMBL)
mqsdrsdsrglntqrtqsltgsgdtrgkhRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRnveaipdpllpitngplnplwdrwferpkesrgcrcwil
Low Complexity Region (SEG)
MQSDRSDSRGLNTQRTQSLTGSGDTRGKHRIQAELKrleqetrfleeeleqlDKTEKASAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL
Disordered region (IsUnstruct)
****************************************************************TLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWI*
Disordered Region (DISOPRED)
******************************IQAELKRLEQETRFLEEEL*******K*SAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL
Disordered Region (DISEMBL)
***************************KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL
Disordered Region (DISPRO)
*************************RGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSDRSDSRGLNTQRTQSLTGSGDTRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q93V47	100	Guanine nucleotide-bindin	yes	no	0.943	1.0	0.594	5e-23
Q9FDX9	98	Guanine nucleotide-bindin	no	no	0.754	0.816	0.6	2e-22

>sp|Q93V47|GG2_ARATH Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis thaliana GN=GG2 PE=1 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 77/106 (72%), Gaps = 6/106 (5%)

Query: 1   MQSDRSDSRGLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASA 60
           M++  S+S G  + R        DTRGKHRIQAELKRLEQE RFLEEELEQL+K + ASA
Sbjct: 1   MEAGSSNSSGQLSGRVV------DTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASA 54

Query: 61  ACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL 106
           +C E L +V++ PDPLLP T GP+N  WD+WFE PKE++ C C IL
Sbjct: 55  SCKEFLDSVDSKPDPLLPETTGPVNATWDQWFEGPKEAKRCGCSIL 100

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Involved in the abscisic acid (ABA) and ethylene signaling pathways. Regulates basipetal transport of auxin (IAA) in roots and hypocotyls, and thus modulates root architecture (e.g. lateral root formation). The heterotrimeric G-protein controls defense responses to necrotrophic and vascular fungi probably by modulating cell wall-related genes expression; involved in resistance to Plectosphaerella cucumerina.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX9|GG1_ARATH Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana GN=GG1 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 57/80 (71%)

Query: 27  GKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLNP 86
           GKHRI AEL R+EQE  FLE+EL++++ T+  S  C E L  +E  PDPLLP+TNGPLN 
Sbjct: 19  GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGPDPLLPLTNGPLNL 78

Query: 87  LWDRWFERPKESRGCRCWIL 106
            WDRWFE P    GCRC IL
Sbjct: 79  GWDRWFEGPNGGEGCRCLIL 98

Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction. Involved in the abscisic acid (ABA) and ethylene signaling pathways. Regulates acropetal transport of auxin (IAA) in roots and hypocotyls, and thus modulates root architecture (e.g. lateral root formation). The heterotrimeric G-protein controls defense responses to necrotrophic and vascular fungi probably by modulating cell wall-related genes expression; involved in resistance to fungal pathogens such as Alternaria brassicicola, Plectosphaerella cucumerina and Fusarium oxysporum.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
255552003	106	conserved hypothetical protein [Ricinus	1.0	1.0	0.783	2e-40
224134793	109	predicted protein [Populus trichocarpa]	1.0	0.972	0.752	3e-40
449465703	104	PREDICTED: guanine nucleotide-binding pr	0.952	0.971	0.708	1e-32
225432852	105	PREDICTED: uncharacterized protein LOC10	0.981	0.990	0.663	1e-26
357440557	109	hypothetical protein MTR_1g071100 [Medic	0.839	0.816	0.606	2e-26
356535325	106	PREDICTED: uncharacterized protein LOC10	0.990	0.990	0.663	2e-25
294462125	111	unknown [Picea sitchensis]	0.990	0.945	0.564	4e-25
356576549	106	PREDICTED: uncharacterized protein LOC10	0.990	0.990	0.644	1e-24
388517813	107	unknown [Lotus japonicus]	0.990	0.981	0.666	1e-24
388500546	109	unknown [Medicago truncatula]	0.839	0.816	0.584	2e-24

>gi|255552003|ref|XP_002517046.1| conserved hypothetical protein [Ricinus communis] gi|223543681|gb|EEF45209.1| conserved hypothetical protein [Ricinus communis]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/106 (78%), Positives = 89/106 (83%)

Query: 1   MQSDRSDSRGLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASA 60
           MQSDRSDS G  TQR  SL  S DTRGKHRIQAE+KRLEQETRFLE+ELEQLDK EKASA
Sbjct: 1   MQSDRSDSSGPITQRVNSLLSSTDTRGKHRIQAEVKRLEQETRFLEQELEQLDKMEKASA 60

Query: 61  ACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL 106
           AC E L NV+  PDPLLPIT G LNPLWDRWFE P+ES+GCRCW+L
Sbjct: 61  ACKEMLSNVDIRPDPLLPITKGLLNPLWDRWFEGPQESQGCRCWVL 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134793|ref|XP_002321907.1| predicted protein [Populus trichocarpa] gi|222868903|gb|EEF06034.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 88/109 (80%), Gaps = 3/109 (2%)

Query: 1   MQSDRSDSRGLNTQRTQSLTGSG---DTRGKHRIQAELKRLEQETRFLEEELEQLDKTEK 57
           M+SDRSDS G  TQR  SL  +    DTRGKHRIQAELKR+EQE RFLEEELEQLDK EK
Sbjct: 1   MESDRSDSSGPITQRVYSLGAAASATDTRGKHRIQAELKRIEQEARFLEEELEQLDKLEK 60

Query: 58  ASAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL 106
           AS AC E L NVE IPDPLLPITNGP+NPLWDRWFE P+ES+GC CWI 
Sbjct: 61  ASTACKEMLNNVETIPDPLLPITNGPMNPLWDRWFEGPRESKGCSCWIF 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465703|ref|XP_004150567.1| PREDICTED: guanine nucleotide-binding protein subunit gamma 2-like [Cucumis sativus] gi|449520986|ref|XP_004167513.1| PREDICTED: guanine nucleotide-binding protein subunit gamma 2-like [Cucumis sativus]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/103 (70%), Positives = 82/103 (79%), Gaps = 2/103 (1%)

Query: 6   SDSRGLNTQRTQSLTGSG--DTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACN 63
           S S    TQR QS + S   DTRGKHRIQAE+KRLEQE RFLEEELEQLDK +KAS  C 
Sbjct: 2   SQSASPITQRVQSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEEELEQLDKLDKASTKCK 61

Query: 64  ETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL 106
           E L NVE  PDPLLP+T+GP+NPLWDRWFE P++S+GCRCWIL
Sbjct: 62  EMLSNVETRPDPLLPLTHGPINPLWDRWFEGPQDSKGCRCWIL 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432852|ref|XP_002283821.1| PREDICTED: uncharacterized protein LOC100256197 [Vitis vinifera] gi|297737134|emb|CBI26335.3| unnamed protein product [Vitis vinifera]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 82/107 (76%), Gaps = 3/107 (2%)

Query: 1   MQSDRSDSR-GLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKAS 59
           MQS  S +   +N Q   S   + DTRGKHRI AELKRLEQE RFLEEELEQL+KTE+AS
Sbjct: 1   MQSGNSQAAPSINHQ--DSALAAADTRGKHRITAELKRLEQEARFLEEELEQLEKTERAS 58

Query: 60  AACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL 106
            AC E L  VE+ PDPLLP+T GP NP+WDRWFE P++S+GCRCWIL
Sbjct: 59  DACRELLSIVESRPDPLLPVTYGPANPIWDRWFEGPQDSQGCRCWIL 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440557|ref|XP_003590556.1| hypothetical protein MTR_1g071100 [Medicago truncatula] gi|355479604|gb|AES60807.1| hypothetical protein MTR_1g071100 [Medicago truncatula]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 72/89 (80%)

Query: 18  SLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLL 77
           S  G+ D RGKHRI AELKRL+Q+T+FL+EEL++L+KTE  SA C E L+N+++ PDPL+
Sbjct: 21  SADGATDKRGKHRILAELKRLQQDTKFLQEELDELEKTENVSAICKELLQNMDSRPDPLI 80

Query: 78  PITNGPLNPLWDRWFERPKESRGCRCWIL 106
           P  +GP+N LWDRWFE P++ + CRCWIL
Sbjct: 81  PEVHGPVNLLWDRWFEGPQDPQACRCWIL 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535325|ref|XP_003536197.1| PREDICTED: uncharacterized protein LOC100779336 [Glycine max]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 79/107 (73%), Gaps = 2/107 (1%)

Query: 1   MQSDRSDSRGLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASA 60
           M+S   +S    T R QSL+ S DTRGKHRI AELKRLEQE RFLEEELEQL+KTEKAS 
Sbjct: 1   MESGGPESASPMTHRVQSLS-SADTRGKHRIHAELKRLEQEARFLEEELEQLEKTEKAST 59

Query: 61  ACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRG-CRCWIL 106
            C     NVE  PDPLLP T GPL+P WDRWFE P++S+  CRCWIL
Sbjct: 60  TCKVMPSNVETKPDPLLPSTVGPLSPAWDRWFEGPQDSKSCCRCWIL 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294462125|gb|ADE76615.1| unknown [Picea sitchensis]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 70/108 (64%), Gaps = 3/108 (2%)

Query: 2   QSDRSDSRGLNTQRTQSLT---GSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKA 58
           ++DRS S G    R Q         D  GKHR  AEL RL QE RFLEEELE LDK +KA
Sbjct: 4   ETDRSVSTGAQNGRPQDSKQPPTETDVGGKHRKLAELHRLNQEIRFLEEELEDLDKIDKA 63

Query: 59  SAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL 106
           ++AC E L  +E  PDPLL +T GP NP WDRWFE P ES GC+CWI+
Sbjct: 64  TSACKEMLLIIENTPDPLLSVTKGPENPAWDRWFEGPVESDGCKCWII 111

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576549|ref|XP_003556393.1| PREDICTED: uncharacterized protein LOC100812916 isoform 1 [Glycine max]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 80/107 (74%), Gaps = 2/107 (1%)

Query: 1   MQSDRSDSRGLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASA 60
           M+S   +S    T R QSL+ S DTRGKHRI AELKRLEQE RFLEEELEQL++ EKAS 
Sbjct: 1   MESGGPESASPMTHRVQSLS-SADTRGKHRIHAELKRLEQEARFLEEELEQLERMEKAST 59

Query: 61  ACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRG-CRCWIL 106
           +C   L NVE  PDPLLP + GPL+P WDRWFE P++S+  CRCWIL
Sbjct: 60  SCKIMLINVETKPDPLLPSSVGPLSPTWDRWFEGPQDSKSCCRCWIL 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517813|gb|AFK46968.1| unknown [Lotus japonicus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/108 (66%), Positives = 82/108 (75%), Gaps = 3/108 (2%)

Query: 1   MQSDRSDSRGLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASA 60
           MQS   +S    T+R QSL+ S DTRGKHRI AELKRLEQE RFLEEELEQL++ EKAS 
Sbjct: 1   MQSGGPESENPMTERAQSLS-SADTRGKHRIHAELKRLEQEARFLEEELEQLERMEKAST 59

Query: 61  ACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERP-KESRG-CRCWIL 106
           +C E L NVE  PDPLLP T GP+NP WDRWFE P ++S+G CRC IL
Sbjct: 60  SCKEMLSNVETRPDPLLPSTVGPVNPAWDRWFEGPHQDSKGCCRCSIL 107

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500546|gb|AFK38339.1| unknown [Medicago truncatula]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 70/89 (78%)

Query: 18  SLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLL 77
           S  G+ D RGKHRI AELKRL+Q+T+FL+EEL++L+KTE   A C E L+N+++ PDPL+
Sbjct: 21  SADGATDKRGKHRILAELKRLQQDTKFLQEELDELEKTENVPAICKELLQNMDSRPDPLI 80

Query: 78  PITNGPLNPLWDRWFERPKESRGCRCWIL 106
           P  +GP+N LWDRWFE P++ + CRC IL
Sbjct: 81  PEVHGPVNLLWDRWFEGPQDPQACRCRIL 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
UNIPROTKB|Q75WU1	93	RGG1 "Heterotrimeric G protein	0.801	0.913	0.494	1.1e-18
TAIR|locus:1005471648	100	AGG2 "G-protein gamma subunit	0.783	0.83	0.518	1.4e-18
TAIR|locus:2087398	98	GG1 "Ggamma-subunit 1" [Arabid	0.849	0.918	0.440	1.3e-15
UNIPROTKB|Q6YXX9	150	OSJNBa0026E05.11-1 "Os02g01378	0.735	0.52	0.371	9.4e-11

UNIPROTKB|Q75WU1 RGG1 "Heterotrimeric G protein gamma subunit 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 42/85 (49%), Positives = 51/85 (60%)

Query:    22 SGDTRGKHRIQAELKXXXXXXXXXXXXXXXXDKTEKASAACNETLRNVEAIPDPLLPITN 81
             +GDTRG+HRIQAELK                DKT+K SAA  E +   E+  DPLLP+T 
Sbjct:     9 AGDTRGRHRIQAELKKLEQEARFLEEELEELDKTDKVSAALQELMVTAESKADPLLPVTT 68

Query:    82 GPLNPLWDRWFERPKESRGCRCWIL 106
             GP    WDRWFE P++ R C+CW L
Sbjct:    69 GPACQSWDRWFEGPQDLRRCKCWFL 93

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1005471648 AGG2 "G-protein gamma subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/83 (51%), Positives = 53/83 (63%)

Query:    24 DTRGKHRIQAELKXXXXXXXXXXXXXXXXDKTEKASAACNETLRNVEAIPDPLLPITNGP 83
             DTRGKHRIQAELK                +K + ASA+C E L +V++ PDPLLP T GP
Sbjct:    18 DTRGKHRIQAELKRLEQEARFLEEELEQLEKMDNASASCKEFLDSVDSKPDPLLPETTGP 77

Query:    84 LNPLWDRWFERPKESRGCRCWIL 106
             +N  WD+WFE PKE++ C C IL
Sbjct:    78 VNATWDQWFEGPKEAKRCGCSIL 100

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0018342 "protein prenylation" evidence=IMP

GO:0018345 "protein palmitoylation" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2087398 GG1 "Ggamma-subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 41/93 (44%), Positives = 50/93 (53%)

Query:    14 QRTQSLTGSGDTRGKHRIQAELKXXXXXXXXXXXXXXXXDKTEKASAACNETLRNVEAIP 73
             ++ +S++  G   GKHRI AEL                 + T+  S  C E L  +E  P
Sbjct:     9 EQEESVSHGG---GKHRILAELARVEQEVAFLEKELKEVENTDIVSTVCEELLSVIEKGP 65

Query:    74 DPLLPITNGPLNPLWDRWFERPKESRGCRCWIL 106
             DPLLP+TNGPLN  WDRWFE P    GCRC IL
Sbjct:    66 DPLLPLTNGPLNLGWDRWFEGPNGGEGCRCLIL 98

GO:0005737 "cytoplasm" evidence=ISM

GO:0005525 "GTP binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010541 "acropetal auxin transport" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

UNIPROTKB|Q6YXX9 OSJNBa0026E05.11-1 "Os02g0137800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 29/78 (37%), Positives = 39/78 (50%)

Query:    27 GKHRIQAELKXXXXXXXXXXXXXXXXDKTEKASAACNETLRNVEAIPDPLLPITNGPLNP 86
             GKHR+ A +                 +  E ASAAC   + + E   DPLLP+T GP N 
Sbjct:    65 GKHRLSAAIARLDQELQSLQDELNELETMEPASAACQGVITSTEGKSDPLLPVTIGPENA 124

Query:    87 LWDRWFERPKESRGCRCW 104
              W+RWF+R + SR  + W
Sbjct:   125 SWERWFQRVRSSRSNKWW 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      106        90   0.00091  102 3  11 23  0.39    30
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  117 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.98u 0.12s 8.10t   Elapsed:  00:00:01
  Total cpu time:  7.98u 0.12s 8.10t   Elapsed:  00:00:01
  Start:  Fri May 10 11:29:51 2013   End:  Fri May 10 11:29:52 2013

GO:0005515 "protein binding" evidence=IPI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93V47	GG2_ARATH	No assigned EC number	0.5943	0.9433	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0005058701 hypothetical protein (109 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam00631	69	pfam00631, G-gamma, GGL domain	9e-06

>gnl|CDD|216034 pfam00631, G-gamma, GGL domain

 Score = 40.0 bits (94), Expect = 9e-06
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 31  IQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAI--PDPLLPITNGPLNPLW 88
           +     RL++E   L+EELE+  +  K S AC E +   E     DPLLP    P     
Sbjct: 1   MSQLKLRLKREIEQLKEELER--ERIKVSKACKELIDYCEQRSTKDPLLPGVWPP--NKE 56

Query: 89  DRWFERPKESRGCRCWIL 106
           + W E+        CWIL
Sbjct: 57  NPWIEKDGC-----CWIL 69

G-protein gamma like domains (GGL) are found in the gamma subunit of the heterotrimeric G protein complex and in regulators of G protein signaling (RGS) proteins. It is also found fused to an inactive Galpha in the Dictyostelium protein gbqA. G-gamma likely shares a common origin with the helical N-terminal unit of G-beta. All organisms that posses a G-beta possess a G-gamma. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF00631	68	G-gamma: GGL domain; InterPro: IPR015898 This entr	99.75
cd00068	57	GGL G protein gamma subunit-like motifs, the alpha	97.78
smart00224	63	GGL G protein gamma subunit-like motifs.	97.36
KOG4119	71	consensus G protein gamma subunit [Signal transduc	95.81
PRK14011	144	prefoldin subunit alpha; Provisional	95.52
PRK01203	130	prefoldin subunit alpha; Provisional	93.87
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	93.3
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	92.01
PRK03947	140	prefoldin subunit alpha; Reviewed	91.53
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	86.62
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	86.36
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.22
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	83.3
PF10458	66	Val_tRNA-synt_C: Valyl tRNA synthetase tRNA bindin	80.49

>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide

Probab=99.75  E-value=2.7e-19  Score=115.97  Aligned_cols=68  Identities=43%  Similarity=0.850  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCCCCchhHHhhhCCCCCCCcccccC
Q 034008           32 QAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLNPLWDRWFERPKESRGCRCWIL  106 (106)
Q Consensus        32 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp~n~sWdRWfegp~~s~~c~cwil  106 (106)
                      ++++.+|.+||.+|++||+. +++ +||.||++|++|+++.+|||||...||.+.+|..|+++    ++| ||||
T Consensus         1 ~~~~~~l~~ei~~L~~el~~-~r~-~vS~a~~~li~y~~~~~DPll~~~~~p~~~~~NPw~~~----~~~-C~il   68 (68)
T PF00631_consen    1 KQEKDQLKREIEQLRQELER-ERI-KVSKACKELIEYCESTPDPLLPGPWGPPSSSSNPWIEK----DGC-CWIL   68 (68)
T ss_dssp             -THHHHHHHHHHHHHHHHTS------HHHHHHHHHHHHHGTC-HHHHT--SS--GGGSTTCC-----STH-HHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcc-cce-eHHHHHHHHHHHhcCCCCceeCCCCCCCCccCCCCcCC----CCC-eeeC
Confidence            36788999999999999999 999 99999999999999999999999999999999999999    667 9985

The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....

>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors

Probab=97.78  E-value=4.7e-05  Score=48.49  Aligned_cols=51  Identities=35%  Similarity=0.446  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcC--CCCCccccCCCCCchh
Q 034008           36 KRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAI--PDPLLPITNGPLNPLW   88 (106)
Q Consensus        36 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~--pDPLLP~t~gp~n~sW   88 (106)
                      +.+.+++.+|..||.-  .--++|.||.+++.|++..  .||||+-..++.|+..
T Consensus         2 ~~~~~~veqLr~el~~--~RikvS~a~~~l~~y~e~~~~~Dpll~g~~~~~NP~~   54 (57)
T cd00068           2 DQLKKEVEQLRKELSR--ERLKVSKAAAELLKYCEQNAENDPLLTGPPSPSNPWI   54 (57)
T ss_pred             HHHHHHHHHHHHHHCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Confidence            4677888888888765  3668999999999999999  9999987776667643

>smart00224 GGL G protein gamma subunit-like motifs

Probab=97.36  E-value=0.00042  Score=44.92  Aligned_cols=41  Identities=39%  Similarity=0.480  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh--cCCCCCcc
Q 034008           36 KRLEQETRFLEEELEQLDKTEKASAACNETLRNVE--AIPDPLLP   78 (106)
Q Consensus        36 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP   78 (106)
                      +.+.+++.+|+.||+-  .--++|.||.+++.|++  ..-||||.
T Consensus         2 ~~~~~~ve~Lr~el~~--~RikvS~a~~~li~y~e~~~~~DP~l~   44 (63)
T smart00224        2 DQLRKEVEQLRKELSR--ERIKVSKAAEELLAYCEQHAEEDPLLT   44 (63)
T ss_pred             hHHHHHHHHHHHHHCC--ceehHHHHHHHHHHHHHcCCCCCCCcC
Confidence            5678889999988875  36689999999999999  45566664

>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]

Probab=95.81  E-value=0.029  Score=38.15  Aligned_cols=51  Identities=29%  Similarity=0.311  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCC--CCCccccCCCCCc
Q 034008           34 ELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIP--DPLLPITNGPLNP   86 (106)
Q Consensus        34 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLLP~t~gp~n~   86 (106)
                      ++.++..++..|..|+.. | -.++|.+|+|+.+|+|...  |||+-.-...+|+
T Consensus         8 ~~~q~k~~VeqLk~e~~~-~-R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~~NP   60 (71)
T KOG4119|consen    8 KKPQMKKEVEQLKLEANI-E-RIKVSKAAAELLEYCETHATEDPLLEGVPEKENP   60 (71)
T ss_pred             chHHHHHHHHHHHHHHHh-h-HhhHHHHHHHHHHHHHhcCccCccccCCccccCC
Confidence            455666777777777653 3 6789999999999999988  9998665555665

>PRK14011 prefoldin subunit alpha; Provisional

Probab=95.52  E-value=0.032  Score=41.51  Aligned_cols=54  Identities=20%  Similarity=0.311  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCC
Q 034008           30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGP   83 (106)
Q Consensus        30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp   83 (106)
                      .++.+|+.+.+||..|+.+|..|.....=-..|+|.+..+....+=|+|+|.|-
T Consensus         7 ~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~   60 (144)
T PRK14011          7 NQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGA   60 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCc
Confidence            567899999999999999999999888777899999998888888899998763

>PRK01203 prefoldin subunit alpha; Provisional

Probab=93.87  E-value=0.14  Score=37.95  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh--cCCCCCccccCCC
Q 034008           30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE--AIPDPLLPITNGP   83 (106)
Q Consensus        30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~t~gp   83 (106)
                      -+.++++.|++||..|+++|+.|.....=-..|.|.+....  ...+=|+|.|.|-
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~sl   59 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGI   59 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCc
Confidence            45789999999999999999999988777778888888764  4566788988763

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=93.30  E-value=0.22  Score=34.48  Aligned_cols=52  Identities=25%  Similarity=0.410  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcC--CCCCccccCC
Q 034008           31 IQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAI--PDPLLPITNG   82 (106)
Q Consensus        31 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~--pDPLLP~t~g   82 (106)
                      +++.+++|.+++..|+..+.+|+..-+--..+++++.++...  .+=|+|++.|
T Consensus         4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~   57 (126)
T TIGR00293         4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAG   57 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCC
Confidence            567888899999999999999888888888889999999876  3346787665

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=92.01  E-value=0.42  Score=35.92  Aligned_cols=54  Identities=22%  Similarity=0.390  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCC---CCCccccCC
Q 034008           29 HRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIP---DPLLPITNG   82 (106)
Q Consensus        29 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p---DPLLP~t~g   82 (106)
                      .++.|+++.|+++|..|+-++..|+..-.-=+-|++-++++.+..   -=|+|+..|
T Consensus         9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag   65 (145)
T COG1730           9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAG   65 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCC
Confidence            468899999999999999999999999988899999999998876   457777655

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=91.53  E-value=0.59  Score=33.08  Aligned_cols=53  Identities=26%  Similarity=0.485  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcC---CCCCccccCC
Q 034008           30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAI---PDPLLPITNG   82 (106)
Q Consensus        30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~---pDPLLP~t~g   82 (106)
                      .+++.++.|.++|..|+..+..|+..-+--..+++.+.++...   .+=|+|++.+
T Consensus        10 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~   65 (140)
T PRK03947         10 ELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAG   65 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCC
Confidence            5677889999999999999999999888888999999998853   3345666644

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=86.62  E-value=2.9  Score=28.62  Aligned_cols=48  Identities=25%  Similarity=0.315  Sum_probs=38.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008           28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP   75 (106)
Q Consensus        28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP   75 (106)
                      +....++|..|..+|..|+.+...++..=.-...|++++..|-...+.
T Consensus        76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~~~~e  123 (126)
T PF13863_consen   76 KEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVPKSPE  123 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            445677888888888888888888888877778999999988766554

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=86.36  E-value=2.3  Score=29.49  Aligned_cols=53  Identities=28%  Similarity=0.459  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhc---CCCCCccccCC
Q 034008           30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEA---IPDPLLPITNG   82 (106)
Q Consensus        30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves---~pDPLLP~t~g   82 (106)
                      -+++.++.|.++|..|+.++..|...-.--..+++.+..+..   ..+=|+|++.|
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~   58 (129)
T cd00584           3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAG   58 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCC
Confidence            356788889999999999999988888888888888888864   33456777654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.22  E-value=2.1  Score=31.12  Aligned_cols=38  Identities=34%  Similarity=0.502  Sum_probs=33.2

Q ss_pred             CCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 034008           21 GSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKA   58 (106)
Q Consensus        21 ~~~d~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~a   58 (106)
                      +.|..----|+++.|.+++-|+..|++||..|+.....
T Consensus        11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~   48 (120)
T PF12325_consen   11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDE   48 (120)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677778899999999999999999999999876544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=83.30  E-value=2.1  Score=26.54  Aligned_cols=25  Identities=44%  Similarity=0.721  Sum_probs=21.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008           28 KHRIQAELKRLEQETRFLEEELEQL   52 (106)
Q Consensus        28 khR~~ael~~LeqEi~fLeeEL~~L   52 (106)
                      ..|...+++++++++.-+|.|+++|
T Consensus        43 ~~~~r~~~~~~~k~l~~le~e~~~l   67 (68)
T PF06305_consen   43 RLRLRRRIRRLRKELKKLEKELEQL   67 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567778999999999999998875

>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6

Probab=80.49  E-value=2.9  Score=26.72  Aligned_cols=24  Identities=50%  Similarity=0.808  Sum_probs=20.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Q 034008           31 IQAELKRLEQETRFLEEELEQLDK   54 (106)
Q Consensus        31 ~~ael~~LeqEi~fLeeEL~~LE~   54 (106)
                      +.+|+.+|+.++.-++.++..+++
T Consensus         2 ~~~E~~rL~Kel~kl~~~i~~~~~   25 (66)
T PF10458_consen    2 VEAEIERLEKELEKLEKEIERLEK   25 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999888775

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
1got_G	73	GT-gamma; complex (GTP-binding/transducer), G prot	96.4
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	90.3
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	86.75
2wg5_A	109	General control protein GCN4, proteasome-activatin	85.31
3v5w_G	77	G gamma-I, guanine nucleotide-binding protein G(I)	81.57
2er8_A	72	Regulatory protein Leu3; Zn(2)Cys(6) binuclear clu	81.23
4dac_A	28	Computationally designed crystal forming protein;	80.86

>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*

Probab=96.40  E-value=0.00083  Score=44.39  Aligned_cols=56  Identities=29%  Similarity=0.352  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh--cCCCCCccccCCCCCch
Q 034008           30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE--AIPDPLLPITNGPLNPL   87 (106)
Q Consensus        30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~t~gp~n~s   87 (106)
                      +-++.+.+|.+++.+|..||. ++. -++|.+|.+++.|++  +.-||||+--..+.|+.
T Consensus        14 ~~~~~~~~lr~~veqLr~el~-~~R-ikVS~aa~~L~~Yce~~~~~DpLl~g~~~~~NPf   71 (73)
T 1got_G           14 EDLTEKDKLKMEVDQLKKEVT-LER-MLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPF   71 (73)
T ss_dssp             --CTHHHHHHHHHHHHHHHTT-CCC-CCHHHHHHHHHHHHHHHGGGCHHHHCCCGGGCTT
T ss_pred             cccccHHHHHHHHHHHHHHHC-Cch-hhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCC
Confidence            345688899999999999984 444 479999999999999  56999997333333543

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=90.30  E-value=0.44  Score=32.35  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhc--CCCCCccccCC
Q 034008           29 HRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEA--IPDPLLPITNG   82 (106)
Q Consensus        29 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP~t~g   82 (106)
                      .++++.+++|++++..|+..+..|+...+--.-|+|.+..+..  ..+=+.|.+.+
T Consensus         4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~   59 (133)
T 1fxk_C            4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAG   59 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCC
Confidence            4678899999999999999999999999988899999999884  33445665543

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=86.75  E-value=0.9  Score=25.31  Aligned_cols=25  Identities=36%  Similarity=0.504  Sum_probs=21.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008           29 HRIQAELKRLEQETRFLEEELEQLD   53 (106)
Q Consensus        29 hR~~ael~~LeqEi~fLeeEL~~LE   53 (106)
                      +|+..+-.+|.|||.-||=|+.-||
T Consensus         3 rrlkqknarlkqeiaaleyeiaale   27 (28)
T 3ra3_B            3 RRLKQKNARLKQEIAALEYEIAALE   27 (28)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            5777788899999999999988776

>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A

Probab=85.31  E-value=0.92  Score=30.87  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 034008           31 IQAELKRLEQETRFLEEELEQLDKTEKASAACNET   65 (106)
Q Consensus        31 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv   65 (106)
                      ++++++.|++|+..|++||+.|.+.+-.-.-|-|+
T Consensus        12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~   46 (109)
T 2wg5_A           12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDI   46 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence            57899999999999999999998865443333333

>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*

Probab=81.57  E-value=0.62  Score=31.19  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhc--CCCCCcc
Q 034008           35 LKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEA--IPDPLLP   78 (106)
Q Consensus        35 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP   78 (106)
                      |.++.+.+.-|.-|.. ++. -++|.+++||..|++.  ..||||-
T Consensus        15 i~q~rk~VeQLr~Ea~-i~R-ikVSqaaadL~~yc~~~~~~DpLl~   58 (77)
T 3v5w_G           15 IAQARKLVEQLKMEAN-IDR-IKVSKAAADLMAYCEAHAKEDPLLT   58 (77)
T ss_dssp             HHHHHHHHHHHHHHHS-SCC-CCHHHHHHHHHHHHHHSGGGCTTTS
T ss_pred             HHHHHHHHHHHHHHhc-cch-hhHHHHHHHHHHHHHhcCCCCCCcC
Confidence            4444455555554432 333 3699999999999987  6799984

>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A

Probab=81.23  E-value=1.3  Score=26.72  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 034008           32 QAELKRLEQETRFLEEELEQLDK   54 (106)
Q Consensus        32 ~ael~~LeqEi~fLeeEL~~LE~   54 (106)
                      ...|+.||++|..|+..|+.|+.
T Consensus        48 ~~~~~~Le~ri~~Le~~l~~l~~   70 (72)
T 2er8_A           48 RARNEAIEKRFKELTRTLTNLTS   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999988764

>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}

Probab=80.86  E-value=1.1  Score=24.94  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=18.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Q 034008           29 HRIQAELKRLEQETRFLEEELEQ   51 (106)
Q Consensus        29 hR~~ael~~LeqEi~fLeeEL~~   51 (106)
                      ..+-|.+++||.|++-||.|...
T Consensus         4 ykldanvkrlekevgklegevar   26 (28)
T 4dac_A            4 YKLDANVKRLEKEVGKLEGEVAR   26 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             eeccccHHHHHHHHhhhhhhhhh
Confidence            35678899999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1gg2g_	54	Transducin (heterotrimeric G protein), gamma chain	94.35
d1tbge_	68	Transducin (heterotrimeric G protein), gamma chain	93.43
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	93.1

>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Transducin (heterotrimeric G protein), gamma chain
family: Transducin (heterotrimeric G protein), gamma chain
domain: Transducin (heterotrimeric G protein), gamma chain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.35  E-value=0.036  Score=33.12  Aligned_cols=42  Identities=29%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh--cCCCCCcc
Q 034008           35 LKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE--AIPDPLLP   78 (106)
Q Consensus        35 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP   78 (106)
                      |.++.++|..|.-|+. ++ --++|.+|.|++.|+|  +.-||||-
T Consensus         2 i~q~rk~VeqLr~e~~-~~-RikvS~aa~~l~~y~e~~~~~Dpll~   45 (54)
T d1gg2g_           2 IAQARKLVEQLKMEAN-ID-RIKVSKAAADLMAYCEAHAKEDPLLT   45 (54)
T ss_dssp             HHHHHHHHHHHHHHHS-SC-CCCHHHHHHHHHHHHHHHGGGCTTTS
T ss_pred             HHHHHHHHHHHHHHhC-Cc-hhhHHHHHHHHHHHHHhcCcCCCCcC
Confidence            4567778888887764 23 3479999999999999  78899983

>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Transducin (heterotrimeric G protein), gamma chain
family: Transducin (heterotrimeric G protein), gamma chain
domain: Transducin (heterotrimeric G protein), gamma chain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.43  E-value=0.011  Score=37.22  Aligned_cols=45  Identities=31%  Similarity=0.509  Sum_probs=29.5

Q ss_pred             CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh--cCCCCCc
Q 034008           24 DTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE--AIPDPLL   77 (106)
Q Consensus        24 d~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLL   77 (106)
                      |+--+-.+.-+|.+|..|++        ++. -++|.+|.||..|++  +..||||
T Consensus         8 dmsd~~~lk~~VeQLr~Ea~--------i~R-~~VS~aa~dl~~yce~~~~~DpLl   54 (68)
T d1tbge_           8 DLTEKDKLKMEVDQLKKEVT--------LER-MLVSKCCEEFRDYVEERSGEDPLV   54 (68)
T ss_dssp             CCCTTHHHHHHHHHHHHHHT--------CCC-CCHHHHHHHHHHHHHTTTTSCHHH
T ss_pred             ccchHHHHHHHHHHHHHHhc--------Cch-hhHHHHHHHHHHHHHhcCCCCCcc
Confidence            33334444444444444443        333 379999999999999  6789997

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.10  E-value=0.066  Score=34.69  Aligned_cols=54  Identities=19%  Similarity=0.390  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCC--CCCccccCC
Q 034008           29 HRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIP--DPLLPITNG   82 (106)
Q Consensus        29 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLLP~t~g   82 (106)
                      +.+.+.++.|+++|..|+.+++.|+..-.--..+++.+..+..+.  +=|+|++.|
T Consensus         4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~   59 (133)
T d1fxkc_           4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAG   59 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCc
Confidence            468899999999999999999999888877777888887776543  346777765