Citrus Sinensis ID: 034015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC
Secondary Structure (PSIPRED)
cEEEEEEEccccccEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccEEEEEccccccHcHEEEEEHHHHHHHHHHHcccccccccccHHHHccccccccEEEEEEEEcccEEEEEEEEcccccHHHHHcEEEEEEEEc
Coil and Loop (DISEMBL)
MIACVAVvghqnnplyiqSFTEADDALKLHHIVHCSLDVVdervnnpkksgptlnetflgllyptenykvygYLTNTKVKFILVTTdldvrdadvrnVSVTISFKC
Flexible Loop (DISEMBL)
MIACVAVVghqnnplyIQSFTEADDALKLHHIVHCSLDVVDERvnnpkksgptlnetflglLYPTENYKVYGYLTNTKVKFILVTTdldvrdadvrnvsvtisfkc
Low Complexity Region (SEG)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC
Disordered region (IsUnstruct)
*IACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVN*******TLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTI****
Disordered Region (DISOPRED)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVD****************FLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC
Disordered Region (DISEMBL)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC
Disordered Region (DISPRO)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q54CU7	140	Trafficking protein parti	yes	no	0.867	0.657	0.535	2e-24
B2RYU6	139	Trafficking protein parti	yes	no	0.915	0.697	0.49	6e-22
Q9UL33	140	Trafficking protein parti	yes	no	0.915	0.692	0.49	6e-22
Q9JME7	139	Trafficking protein parti	yes	no	0.915	0.697	0.49	6e-22
Q5M8X5	139	Trafficking protein parti	yes	no	0.915	0.697	0.5	7e-22
A6H7F7	139	Trafficking protein parti	yes	no	0.915	0.697	0.49	2e-21
B5XGE7	139	Trafficking protein parti	N/A	no	0.915	0.697	0.47	5e-21
B5FXJ6	139	Trafficking protein parti	yes	no	0.915	0.697	0.48	5e-21
Q5RBK9	109	Trafficking protein parti	yes	no	0.716	0.697	0.480	4e-14
O13732	148	Uncharacterized protein C	yes	no	0.886	0.635	0.287	1e-05

>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 77/99 (77%), Gaps = 7/99 (7%)

Query: 2  IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
          I CVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + KK     ++ +
Sbjct: 4  IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMY 60

Query: 59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVR 96
          LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++
Sbjct: 61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK 99

Dictyostelium discoideum (taxid: 44689)

>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 3/100 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein OS=Homo sapiens GN=TRAPPC2L PE=1 SV=1

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 3/100 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus musculus GN=Trappc2l PE=2 SV=1

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 3/100 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 74/100 (74%), Gaps = 3/100 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  CVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSM 99

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Xenopus tropicalis (taxid: 8364)

>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos taurus GN=TRAPPC2L PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 3/100 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein OS=Salmo salar GN=trappc2l PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 72/100 (72%), Gaps = 3/100 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S     + LK H+ VH SLDVV+E+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSM 99

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Salmo salar (taxid: 8030)

>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 3/100 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S    ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Taeniopygia guttata (taxid: 59729)

>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNT 77
          LLYPTE+YK++  L N+
Sbjct: 60 LLYPTEDYKMFRKLHNS 76

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|O13732|YDOC_SCHPO Uncharacterized protein C15A10.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15A10.12c PE=4 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 2   IACVAVVGHQNNPLYIQSFTEADDAL--KLHHIVHCSLDVVDERVNNPKKSGPTLNETFL 59
           +  +++ G ++  LY++     +  L  +  ++   SLDV+++ VN+ +++    N+ FL
Sbjct: 6   LVFLSIAGPKDEQLYLEIIDPKEKHLLARYQYLGELSLDVINDLVNDGERTS---NDCFL 62

Query: 60  GLLYPTENYKVYGYLTNTKVKFILVTTDLD--VRDADVRNV 98
           GLL   E+   Y + +NTKVKFIL     D  V++ ++R +
Sbjct: 63  GLLGVEEDISTYAFYSNTKVKFILAVKAPDYVVKETEIRQL 103

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
225428065	143	PREDICTED: trafficking protein particle	0.915	0.678	0.989	5e-50
449454229	143	PREDICTED: trafficking protein particle	0.915	0.678	0.958	3e-49
224105143	143	predicted protein [Populus trichocarpa]	0.915	0.678	0.979	9e-49
356568553	143	PREDICTED: trafficking protein particle	0.915	0.678	0.958	2e-48
356531840	143	PREDICTED: uncharacterized protein LOC10	0.915	0.678	0.958	2e-48
357507945	143	Trafficking protein particle complex sub	0.915	0.678	0.948	3e-48
242050020	143	hypothetical protein SORBIDRAFT_02g03142	0.915	0.678	0.917	1e-47
357507947	115	Trafficking protein particle complex sub	0.915	0.843	0.948	1e-47
32526668	395	hypothetical protein [Oryza sativa Japon	0.915	0.245	0.886	2e-47
326521478	181	predicted protein [Hordeum vulgare subsp	0.915	0.535	0.896	3e-47

>gi|225428065|ref|XP_002279626.1| PREDICTED: trafficking protein particle complex subunit 2-like protein [Vitis vinifera] gi|297744593|emb|CBI37855.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (511), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 96/97 (98%), Positives = 96/97 (98%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454229|ref|XP_004144858.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Cucumis sativus] gi|449519966|ref|XP_004167005.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Cucumis sativus]

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 96/97 (98%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS 97

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105143|ref|XP_002313700.1| predicted protein [Populus trichocarpa] gi|118482540|gb|ABK93191.1| unknown [Populus trichocarpa] gi|118483113|gb|ABK93465.1| unknown [Populus trichocarpa] gi|222850108|gb|EEE87655.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/97 (97%), Positives = 95/97 (97%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSG TLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGLTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568553|ref|XP_003552475.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Glycine max]

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYP ENYKVYGYLTNTKVKFILVTTDLDV+DADVRN
Sbjct: 61 LLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRN 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531840|ref|XP_003534484.1| PREDICTED: uncharacterized protein LOC100527601 [Glycine max]

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYP ENYKVYGYLTNTKVKFILVTTDLDV+DADVRN
Sbjct: 61 LLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRN 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507945|ref|XP_003624261.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula] gi|355499276|gb|AES80479.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYP ENYKVYGYLTNTKVKFILVTTD+DV+DADVRN
Sbjct: 61 LLYPIENYKVYGYLTNTKVKFILVTTDIDVKDADVRN 97

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050020|ref|XP_002462754.1| hypothetical protein SORBIDRAFT_02g031420 [Sorghum bicolor] gi|241926131|gb|EER99275.1| hypothetical protein SORBIDRAFT_02g031420 [Sorghum bicolor]

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/97 (91%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLY+QSFTEADDALKLHHIVHCSLDV+DERVNNPK+S PTLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYLQSFTEADDALKLHHIVHCSLDVIDERVNNPKRSAPTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFI+VTTDLDV+DAD RN
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADARN 97

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507947|ref|XP_003624262.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula] gi|355499277|gb|AES80480.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYP ENYKVYGYLTNTKVKFILVTTD+DV+DADVRN
Sbjct: 61 LLYPIENYKVYGYLTNTKVKFILVTTDIDVKDADVRN 97

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32526668|dbj|BAC79191.1| hypothetical protein [Oryza sativa Japonica Group]

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/97 (88%), Positives = 93/97 (95%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHH+VHCSLDV+DERVNNPK++ P LNETFLG
Sbjct: 254 MIVCVAVVGHQNNPLYLQSFTEADDALKLHHVVHCSLDVIDERVNNPKRNAPALNETFLG 313

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDV+DAD RN
Sbjct: 314 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADARN 350

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326521478|dbj|BAK00315.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 94/97 (96%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHH+VHCSLDV+DERVNNPK+S PTLNETFLG
Sbjct: 39  MIVCVAVVGHQNNPLYLQSFTEADDALKLHHVVHCSLDVIDERVNNPKRSAPTLNETFLG 98

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
           LLYPTENYKVYGYLTNTKVKF++VTTDLDV+DAD RN
Sbjct: 99  LLYPTENYKVYGYLTNTKVKFLMVTTDLDVKDADARN 135

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2051457	140	AT2G20930 "AT2G20930" [Arabido	0.915	0.692	0.907	1.2e-44
DICTYBASE|DDB_G0292690	140	trappc2l "trafficking protein	0.867	0.657	0.545	5.9e-25
UNIPROTKB|H3BP13	241	TRAPPC2L "Trafficking protein	0.915	0.402	0.49	5.5e-22
UNIPROTKB|Q9UL33	140	TRAPPC2L "Trafficking protein	0.915	0.692	0.49	5.5e-22
RGD|1304906	139	Trappc2l "trafficking protein	0.915	0.697	0.49	5.5e-22
MGI|MGI:1916295	139	Trappc2l "trafficking protein	0.915	0.697	0.49	7e-22
UNIPROTKB|A6H7F7	139	TRAPPC2L "Trafficking protein	0.915	0.697	0.49	1.5e-21
UNIPROTKB|E1BYR2	139	TRAPPC2L "Uncharacterized prot	0.915	0.697	0.48	2.4e-21
UNIPROTKB|E2RB28	140	TRAPPC2L "Uncharacterized prot	0.915	0.692	0.475	1.7e-20
UNIPROTKB|F1MIB4	139	TRAPPC2L "Trafficking protein	0.820	0.625	0.5	5.1e-19

TAIR|locus:2051457 AT2G20930 "AT2G20930" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 88/97 (90%), Positives = 92/97 (94%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             MI CVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNPKKSG TLNE FLG
Sbjct:     1 MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query:    61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
             LLYPT NYKVYGYLTNTKVKFILVTTDLDVRD DVR+
Sbjct:    61 LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRS 97

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

DICTYBASE|DDB_G0292690 trappc2l "trafficking protein particle complex subunit 2-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 54/99 (54%), Positives = 78/99 (78%)

Query:     2 IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
             I CVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + KK  P+  + +
Sbjct:     4 IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKL-PS--DMY 60

Query:    59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVR 96
             LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++
Sbjct:    61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK 99

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|H3BP13 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 49/100 (49%), Positives = 75/100 (75%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9UL33 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 49/100 (49%), Positives = 75/100 (75%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1304906 Trappc2l "trafficking protein particle complex 2-like" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 49/100 (49%), Positives = 75/100 (75%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

MGI|MGI:1916295 Trappc2l "trafficking protein particle complex 2-like" [Mus musculus (taxid:10090)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 49/100 (49%), Positives = 74/100 (74%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|A6H7F7 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Bos taurus (taxid:9913)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 49/100 (49%), Positives = 74/100 (74%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E1BYR2 TRAPPC2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 48/100 (48%), Positives = 73/100 (73%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S    ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKAMVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2RB28 TRAPPC2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 48/101 (47%), Positives = 74/101 (73%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKV-YGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             LLYPTE+YK+ YGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    60 LLYPTEDYKIKYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 100

GO:0005737 "cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1MIB4 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 45/90 (50%), Positives = 68/90 (75%)

Query:    11 QNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKV 70
             QN PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKV
Sbjct:    11 QNYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKV 69

Query:    71 YGYLTNTKVKFILV--TTDLDVRDADVRNV 98
             YGY+TN+KVKF++V  +++  +RD ++R++
Sbjct:    70 YGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99

GO:0005737 "cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54CU7	TPC2L_DICDI	No assigned EC number	0.5353	0.8679	0.6571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036140001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (143 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027363001	SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_4, whole genome shotg [...] (186 aa)				•	•		•		0.539

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	1e-30

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score =  105 bits (263), Expect = 1e-30
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 7  VVGHQNNPLYIQSFTEADDALK----LHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLL 62
          ++G ++NPLY Q F+              I H SLD+V+E            N  +LGL+
Sbjct: 1  IIGKKDNPLYEQEFSSEGKTSIPKHLNQFIAHASLDIVEELQWKT-------NNMYLGLV 53

Query: 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
              +  V GY+TNT +KFIL+      RD D++ 
Sbjct: 54 DSFNDLAVSGYVTNTHIKFILLHDSSTERDDDIKQ 88

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
KOG3444	121	consensus Uncharacterized conserved protein [Funct	100.0
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	99.98
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	99.96
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.93
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	97.25
KOG3368	140	consensus Transport protein particle (TRAPP) compl	96.3
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	95.46
KOG3369	199	consensus Transport protein particle (TRAPP) compl	94.31

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=9.5e-35  Score=194.12  Aligned_cols=103  Identities=57%  Similarity=0.942  Sum_probs=97.2

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCchhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEEEEecCCeE
Q 034015            1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (106)
Q Consensus         1 mi~~~aIIg~~d~PLy~~~~~~~~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~K   80 (106)
                      |++|+|++|++|+|||+.++++.+++|++|+..|+|||+|||+....+|...+++++|||+|++.++++||||+|||++|
T Consensus         1 m~v~~av~g~kn~~lyi~s~t~~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNTkVK   80 (121)
T KOG3444|consen    1 MLVCLAVAGPKNEPLYIESITPKEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNTKVK   80 (121)
T ss_pred             CEEEEEEEcCCCCccEEEecCcHHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEeccEEE
Confidence            89999999999999999999988999999999999999999999887787778899999999999999999999999999


Q ss_pred             EEEEEcCCC--CCchhHHHHhhhcc
Q 034015           81 FILVTTDLD--VRDADVRNVSVTIS  103 (106)
Q Consensus        81 fil~~~~~~--~~d~~Ik~ff~~i~  103 (106)
                      ||+++++++  +||+|||++|...|
T Consensus        81 FIlvvdssd~avreteiRsv~r~~h  105 (121)
T KOG3444|consen   81 FILVVDSSDYAVRETEIRSVFRILH  105 (121)
T ss_pred             EEEEEcCCcceehhHHHHHHHHHHH
Confidence            999998764  89999999998765

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=99.98  E-value=1.4e-32  Score=189.80  Aligned_cols=92  Identities=42%  Similarity=0.772  Sum_probs=73.8

Q ss_pred             EEcCCCCeeEEEcCCCchh------HHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEEEEecCCeE
Q 034015            7 VVGHQNNPLYIQSFTEADD------ALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (106)
Q Consensus         7 IIg~~d~PLy~~~~~~~~~------~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~K   80 (106)
                      |||++|+|||+++++++++      ...+||++|+|||+|||++|.+      +.++|||.|+++++++||||+|+||+|
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~------~~~~yLg~l~~~~~~~vygyvT~t~~K   74 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKS------SSDMYLGLLDPFEDYKVYGYVTNTGIK   74 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCS------SSCSEEEEEEEETTEEEEEEETTT--E
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhc------ccccccCceehhhhHHHHhhhccCcee
Confidence            7999999999999998632      2349999999999999999971      179999999999999999999999999


Q ss_pred             EEEEEc--CCCCCchhHHHHhhhccc
Q 034015           81 FILVTT--DLDVRDADVRNVSVTISF  104 (106)
Q Consensus        81 fil~~~--~~~~~d~~Ik~ff~~i~~  104 (106)
                      |||+++  ....+|++||+||++||-
T Consensus        75 fvl~~~~~~~~~~d~~ik~fF~~vh~  100 (132)
T PF04628_consen   75 FVLVHDMSDNSIRDEDIKQFFKEVHE  100 (132)
T ss_dssp             EEEEECGGG-S--HHHHHHHHHHHHH
T ss_pred             EEEEEecccCCcchHHHHHHHHHHHH
Confidence            999998  345799999999999973

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.1e-30  Score=176.03  Aligned_cols=94  Identities=27%  Similarity=0.448  Sum_probs=87.1

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCc--------hhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEE
Q 034015            1 MIACVAVVGHQNNPLYIQSFTEA--------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (106)
Q Consensus         1 mi~~~aIIg~~d~PLy~~~~~~~--------~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vyg   72 (106)
                      |.+|+||||+.|+|+|+.+++..        +.....||++|+|||+|||.+|.+       ++||||.+|+++++.|+|
T Consensus         1 m~~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~-------snmYLktVDkfne~~VSA   73 (139)
T KOG3487|consen    1 MTAYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTT-------SNMYLKTVDKFNELFVSA   73 (139)
T ss_pred             CceEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHhhcceeEEE
Confidence            78999999999999999999832        345668999999999999999976       799999999999999999


Q ss_pred             EEecCCeEEEEEEcCCCCCchhHHHHhhhcc
Q 034015           73 YLTNTKVKFILVTTDLDVRDADVRNVSVTIS  103 (106)
Q Consensus        73 yvT~t~~Kfil~~~~~~~~d~~Ik~ff~~i~  103 (106)
                      |||++++||+++|..+  .|++||+|||+++
T Consensus        74 yvTas~i~f~mlh~~~--~~~~ik~Ffqev~  102 (139)
T KOG3487|consen   74 YVTASHIRFIMLHINR--ADDNIKLFFQEVH  102 (139)
T ss_pred             EEccCcEEEEEEeecc--ccccHHHHHHHHH
Confidence            9999999999999988  6999999999987

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.93  E-value=1.9e-26  Score=156.34  Aligned_cols=95  Identities=20%  Similarity=0.356  Sum_probs=86.5

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCc-------hhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEEE
Q 034015            1 MIACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGY   73 (106)
Q Consensus         1 mi~~~aIIg~~d~PLy~~~~~~~-------~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vygy   73 (106)
                      |-.++||||++|+|+|+.++++.       ...+..||++|+|||+++.++|+.       +.+|+|+|+.+.+..++||
T Consensus         1 M~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsv-------N~~Y~~~~d~f~~l~IsAY   73 (136)
T COG5603           1 MGEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSV-------NTSYFDCLDSFGDLRISAY   73 (136)
T ss_pred             CCceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHh-------hhHHHHHHHhhCCeEEEEE
Confidence            77899999999999999999854       224668999999999999999976       7899999999999999999


Q ss_pred             EecCCeEEEEEEcCCCCCchhHHHHhhhccc
Q 034015           74 LTNTKVKFILVTTDLDVRDADVRNVSVTISF  104 (106)
Q Consensus        74 vT~t~~Kfil~~~~~~~~d~~Ik~ff~~i~~  104 (106)
                      ++++|+||+++|+..  .++.+|+||||||.
T Consensus        74 i~pSgmkf~~iH~n~--s~~N~rsF~qevHe  102 (136)
T COG5603          74 IMPSGMKFLFIHQNQ--SRKNARSFLQEVHE  102 (136)
T ss_pred             EccCCceEEEEeccc--hhhhHHHHHHHHHH
Confidence            999999999999876  78899999999984

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=97.25  E-value=0.013  Score=40.81  Aligned_cols=86  Identities=17%  Similarity=0.281  Sum_probs=48.4

Q ss_pred             EEEEEEEcCCCCeeEEEcCCCc---------hhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEE
Q 034015            2 IACVAVVGHQNNPLYIQSFTEA---------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (106)
Q Consensus         2 i~~~aIIg~~d~PLy~~~~~~~---------~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vyg   72 (106)
                      |..+=|+++...-||-+++...         +++.+.=+=.--||-.+-.++.............-+. ...++.|+++-
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~-~~~T~~yklh~   79 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFE-SFETDTYKLHC   79 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEE-EEEESS-EEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEE-EEEeCCEEEEE
Confidence            4678899999999999998763         1233322333445666666655321111000111232 25578999999


Q ss_pred             EEecCCeEEEEEEcCC
Q 034015           73 YLTNTKVKFILVTTDL   88 (106)
Q Consensus        73 yvT~t~~Kfil~~~~~   88 (106)
                      |.|.||+|||++++..
T Consensus        80 ~eT~TGlKFvl~td~~   95 (142)
T PF04099_consen   80 FETPTGLKFVLITDPN   95 (142)
T ss_dssp             EE-TTS-EEEEEE-TT
T ss_pred             EEcCcCcEEEEEecCC
Confidence            9999999999999875

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.1  Score=36.52  Aligned_cols=90  Identities=23%  Similarity=0.311  Sum_probs=62.4

Q ss_pred             EEEEEEcCCCCeeEEEcCCCc-------hhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEEEEe
Q 034015            3 ACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLT   75 (106)
Q Consensus         3 ~~~aIIg~~d~PLy~~~~~~~-------~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vygyvT   75 (106)
                      .-+=|-+++.+-||-++-...       +++.++=|=.-.||--+-+++...     +.++.++  =+++..|+++=|.|
T Consensus         4 y~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~-----d~k~~f~--sy~Ts~YklhfyeT   76 (140)
T KOG3368|consen    4 YNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPG-----DVKDGFL--SYKTSKYKLHFYET   76 (140)
T ss_pred             EEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCC-----CcccCee--EEeeceeEEEEEEc
Confidence            446677888888887765433       455666666677888887777643     1234443  35678899999999


Q ss_pred             cCCeEEEEEEcCCCCCchhHHHHhhhc
Q 034015           76 NTKVKFILVTTDLDVRDADVRNVSVTI  102 (106)
Q Consensus        76 ~t~~Kfil~~~~~~~~d~~Ik~ff~~i  102 (106)
                      +||+|||+.++.+   -..+|.+.+.|
T Consensus        77 ptglk~vl~Tdpk---~~~ir~vLq~I  100 (140)
T KOG3368|consen   77 PTGLKFVLNTDPK---AGSIRDVLQYI  100 (140)
T ss_pred             CCCcEEEEecCCC---cccHHHHHHHH
Confidence            9999999999763   34566665554

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=95.46  E-value=0.027  Score=38.62  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=51.3

Q ss_pred             EEEEEcCCCCeeEEEcCCCchhHHHH--HHHHHhhhhhhhhhccCCCCCCCCCccccccc----ceeecCeEEEEEEecC
Q 034015            4 CVAVVGHQNNPLYIQSFTEADDALKL--HHIVHCSLDVVDERVNNPKKSGPTLNETFLGL----LYPTENYKVYGYLTNT   77 (106)
Q Consensus         4 ~~aIIg~~d~PLy~~~~~~~~~~l~~--~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~----l~~~~~~~vygyvT~t   77 (106)
                      -+-||++....+|-++|++.+.++..  -.++-++|-=|.......        -+|-|.    +--+..+...=|.|-|
T Consensus         5 ~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~--------~p~~gssg~~~l~~~~f~m~I~qT~T   76 (134)
T COG5122           5 QFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQT--------IPLPGSSGRLVLYFRNFVMTIFQTTT   76 (134)
T ss_pred             EEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhc--------ccCCCCCceEEEEeccEEEEEEEecC
Confidence            46789999999999999887555543  234444454444433221        112222    2235678889999999


Q ss_pred             CeEEEEEEcCC
Q 034015           78 KVKFILVTTDL   88 (106)
Q Consensus        78 ~~Kfil~~~~~   88 (106)
                      |+|||++.+.+
T Consensus        77 G~kFV~~~~k~   87 (134)
T COG5122          77 GTKFVFVAEKR   87 (134)
T ss_pred             CcEEEEEecCC
Confidence            99999999764

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=0.66  Score=34.06  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             ecCeEEEEEEecCCeEEEEEEcCC
Q 034015           65 TENYKVYGYLTNTKVKFILVTTDL   88 (106)
Q Consensus        65 ~~~~~vygyvT~t~~Kfil~~~~~   88 (106)
                      ++.+..+.|.|-||+|||++.+..
T Consensus       128 tdtF~l~~~QTlTG~KFVvis~~~  151 (199)
T KOG3369|consen  128 TDTFTLHIFQTLTGTKFVVIAEPG  151 (199)
T ss_pred             eccEEEEEEEccCCcEEEEEecCC
Confidence            578999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	5e-30
2j3w_A	142	Sedlin, trafficking protein particle complex prote	3e-20
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	1e-06

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae} Length = 162

 Score =  103 bits (259), Expect = 5e-30
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 2   IACVAVVGHQNNPLYIQSF----TEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNET 57
              V+++   + P+ I        E +D LK + + + SLD  +  +          ++ 
Sbjct: 10  PCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLD---SKP 66

Query: 58  FLGLLYPTENYKVYGYL-TNTKVKFILVTTDLDVRDADVRNVSVTISFK 105
            L  ++  E   V+  L   T +K ++      +  AD    ++   F+
Sbjct: 67  LLKSIFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFE 115

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score = 78.5 bits (193), Expect = 3e-20
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 2  IACVAVVGHQNNPLYIQSFT-------EADDALKLHHIVHCSLDVVDERVNNPKKSGPTL 54
               +VGH +NP++   F        + D       I H +LD+VDE +          
Sbjct: 6  SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLS 58

Query: 55 NETFLGLLYPTENYKVYGYLTNTKVKFILVT 85
          N  +L  +     + V  ++T   ++FI++ 
Sbjct: 59 NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLH 89

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 9   GHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENY 68
            +  +  + +    +++ L L  + H    +  +       SG  +          T+ +
Sbjct: 91  NYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEM--------LETDTF 142

Query: 69  KVYGYLTNTKVKFILVTTDLDVRDADVRNV 98
           K++ Y T T +KF+++    D R A + ++
Sbjct: 143 KLHCYQTLTGIKFVVLA---DPRQAGIDSL 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	99.97
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.95
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	99.81
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	99.67
3cue_C	159	Transport protein particle 18 kDa subunit; membran	99.66
3cue_A	219	Transport protein particle 23 kDa subunit; membran	98.69

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-32  Score=193.92  Aligned_cols=97  Identities=20%  Similarity=0.330  Sum_probs=84.0

Q ss_pred             EEEEEEcCCCCeeEEEcCCCc----hhHHHHHHHHHhhhhhhhhhc--cCCCCCCCCCcccccccceeecCeEEEEEE-e
Q 034015            3 ACVAVVGHQNNPLYIQSFTEA----DDALKLHHIVHCSLDVVDERV--NNPKKSGPTLNETFLGLLYPTENYKVYGYL-T   75 (106)
Q Consensus         3 ~~~aIIg~~d~PLy~~~~~~~----~~~l~~~fi~h~SLDiiee~~--~~~~~~~~~~~~~yLg~l~~~~~~~vygyv-T   75 (106)
                      .|+||||++|+|||++.+++.    +++|++||++|+|||+|||++  |.+    ++ .++|||+|+++++++||||+ |
T Consensus        11 ~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s----~~-~~~~LglL~~~e~~~VYGy~iT   85 (162)
T 3pr6_A           11 CFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHS----LD-SKPLLKSIFQLEGVSVFAMLIK   85 (162)
T ss_dssp             SEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCC----SS-SSCCCEEEEEETTEEEEEEECT
T ss_pred             eEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccc----cc-cccccceEeecCCeEEEEEEEc
Confidence            589999999999999999875    357999999999999999999  532    22 35799999999999999997 9


Q ss_pred             cCCeEEEEEEcCC---CCCc--hhHHHHhhhccc
Q 034015           76 NTKVKFILVTTDL---DVRD--ADVRNVSVTISF  104 (106)
Q Consensus        76 ~t~~Kfil~~~~~---~~~d--~~Ik~ff~~i~~  104 (106)
                      |||+|||++++++   ..+|  ++||+||+++|-
T Consensus        86 nt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~  119 (162)
T 3pr6_A           86 QTGLKIVIGFEQKSLSGADDEFEAINQIFETVRK  119 (162)
T ss_dssp             TTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEccCCcccccchHHHHHHHHHHHHH
Confidence            9999999999874   4788  899999999973

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.95  E-value=2.2e-27  Score=164.68  Aligned_cols=93  Identities=23%  Similarity=0.408  Sum_probs=85.2

Q ss_pred             EEEEEEEcCCCCeeEEEcCCCc-------hhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEEEE
Q 034015            2 IACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (106)
Q Consensus         2 i~~~aIIg~~d~PLy~~~~~~~-------~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vygyv   74 (106)
                      ++|++|||++|+|||++++++.       +..+.+||++|+|||++|++.|.+       +++|||.+++++++++|||+
T Consensus         6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~-------~~~~l~~~~~~~~y~v~~~~   78 (142)
T 2j3w_A            6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-------NNMYLKTVDKFNEWFVSAFV   78 (142)
T ss_dssp             CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-------SCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC-------CcceeEeeecccceEEEEEE
Confidence            4899999999999999999874       345778899999999999999964       68999999999999999999


Q ss_pred             ecCCeEEEEEEcCCCCCchhHHHHhhhcc
Q 034015           75 TNTKVKFILVTTDLDVRDADVRNVSVTIS  103 (106)
Q Consensus        75 T~t~~Kfil~~~~~~~~d~~Ik~ff~~i~  103 (106)
                      |+||+|||++++.+  ++++||++|++|+
T Consensus        79 T~tg~Kfvl~~d~~--~~~~i~~~~~~iy  105 (142)
T 2j3w_A           79 TAGHMRFIMLHDVR--QEDGIKNFFTDVY  105 (142)
T ss_dssp             CTTCCEEEEEESSC--CHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCC--CcHHHHHHHHHHH
Confidence            99999999999875  7999999999987

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=99.81  E-value=1.2e-19  Score=126.25  Aligned_cols=92  Identities=14%  Similarity=0.089  Sum_probs=76.5

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCc-------hh-HHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEE
Q 034015            1 MIACVAVVGHQNNPLYIQSFTEA-------DD-ALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (106)
Q Consensus         1 mi~~~aIIg~~d~PLy~~~~~~~-------~~-~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vyg   72 (106)
                      |+.|++|||++|+|||.++++..       ++ ....++++|+.+|++++..|.+       +..++..+ ++++|++||
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~-------~~~~~~~~-~t~~ykl~~   73 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLD-------MKDGFLSF-QTSRYKLHY   73 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSC-------CSSCEEEE-ECSSCEEEE
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCC-------CCCceEEE-ecCCEEEEE
Confidence            58999999999999999999652       23 3446788888888888887754       34467666 899999999


Q ss_pred             EEecCCeEEEEEEcCCCCCchhHHHHhhhcc
Q 034015           73 YLTNTKVKFILVTTDLDVRDADVRNVSVTIS  103 (106)
Q Consensus        73 yvT~t~~Kfil~~~~~~~~d~~Ik~ff~~i~  103 (106)
                      |+|+||+|||++++.   ++++||+||++|+
T Consensus        74 ~~T~TgiKFvl~td~---~~~~i~~~l~~iy  101 (145)
T 2j3t_C           74 YETPTGIKVVMNTDL---GVGPIRDVLHHIY  101 (145)
T ss_dssp             EECTTSCEEEEEECT---TCCCCHHHHHHHH
T ss_pred             EEcCCCCEEEEEecC---CcchHHHHHHHHH
Confidence            999999999999975   5778999999987

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=99.67  E-value=9.4e-17  Score=118.42  Aligned_cols=87  Identities=21%  Similarity=0.299  Sum_probs=70.6

Q ss_pred             EEEcCCCCeeEEEcCCCc---hhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEEEEecCCeEEE
Q 034015            6 AVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI   82 (106)
Q Consensus         6 aIIg~~d~PLy~~~~~~~---~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfi   82 (106)
                      .|+|++|+|||++.+.+.   ++.+.+..++| |||.|++++|...+      ...+ ....+++|++|||+|+||+|||
T Consensus        85 ~iigk~N~PLyir~f~~~l~sn~~L~lag~lh-SLd~i~~klsp~~~------s~g~-~~~~T~~ykl~~y~T~TgiKFV  156 (219)
T 2j3t_D           85 YLGNPANYPVSIRFGRPRLTSNEKLMLASMFH-SLFAIGSQLSPEQG------SSGI-EMLETDTFKLHCYQTLTGIKFV  156 (219)
T ss_dssp             HTTCGGGCSEEEEEECCCCCHHHHHHHHHHHH-HHHHHHHHTCSSSS------CCSC-SEEEESSCEEEEEECTTSCEEE
T ss_pred             eeecCCCCceEEEecCCCCChhHHHHHHHHHH-HHHHHHHHhCCCCC------CCCe-eEEecCceEEEEEEcCCCCEEE
Confidence            478999999999999875   33455566999 99999999986421      1223 3447899999999999999999


Q ss_pred             EEEcCCCCCchhHHHHhhhcc
Q 034015           83 LVTTDLDVRDADVRNVSVTIS  103 (106)
Q Consensus        83 l~~~~~~~~d~~Ik~ff~~i~  103 (106)
                      ++++.   +++++|++|++|+
T Consensus       157 Lltd~---~~~~ir~~l~~Iy  174 (219)
T 2j3t_D          157 VLADP---RQAGIDSLLRKIY  174 (219)
T ss_dssp             EEECT---TCCCHHHHHHHHH
T ss_pred             EEecC---CchHHHHHHHHHH
Confidence            99975   6889999999987

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.66  E-value=2.2e-16  Score=111.29  Aligned_cols=93  Identities=17%  Similarity=0.215  Sum_probs=68.2

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCC-------------chhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecC
Q 034015            1 MIACVAVVGHQNNPLYIQSFTE-------------ADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTEN   67 (106)
Q Consensus         1 mi~~~aIIg~~d~PLy~~~~~~-------------~~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~   67 (106)
                      |++|+.|||++++|||.+++..             .+++.++.+-++.||+.+.+++....     ..+.|  .+.++++
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~-----~~~~f--~~~~T~~   74 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGS-----VKNDI--RSISTGK   74 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSS-----SCCCE--EEEECSS
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCC-----CCCCe--EEEeeCC
Confidence            4789999999999999999853             13445545444445555555543221     12445  5677899


Q ss_pred             eEEEEEEecCCeEEEEEEcCCCCCchhHHHHhhhcc
Q 034015           68 YKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTIS  103 (106)
Q Consensus        68 ~~vygyvT~t~~Kfil~~~~~~~~d~~Ik~ff~~i~  103 (106)
                      |++|||+|+||+|||++++.   +++++|++|++|+
T Consensus        75 ykl~~~eT~TgiKFvl~td~---~~~~i~~~l~~iy  107 (159)
T 3cue_C           75 YRVHTYCTASGLWFVLLSDF---KQQSYTQVLQYIY  107 (159)
T ss_dssp             CBEEEECCSSCCEEEEECCS---SSSCTHHHHHHHH
T ss_pred             EEEEEEEeCCCCEEEEEeCC---CcchHHHHHHHHH
Confidence            99999999999999999975   5889999999987

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=98.69  E-value=2.3e-07  Score=68.29  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=35.2

Q ss_pred             ceeecCeEEEEEEecCCeEEEEEEcCCC---------------------CCchhHHHHhhhcc
Q 034015           62 LYPTENYKVYGYLTNTKVKFILVTTDLD---------------------VRDADVRNVSVTIS  103 (106)
Q Consensus        62 l~~~~~~~vygyvT~t~~Kfil~~~~~~---------------------~~d~~Ik~ff~~i~  103 (106)
                      +...++|++|||+|+||+||||+++...                     ++|++||+||++|+
T Consensus       121 ~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VY  183 (219)
T 3cue_A          121 QLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVY  183 (219)
T ss_dssp             EEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHH
T ss_pred             EEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHH
Confidence            3457899999999999999999998642                     22489999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	1e-21

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.7 bits (199), Expect = 1e-21
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 2  IACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTL 54
               +VGH +NP++   F          D       I H +LD+VDE +          
Sbjct: 4  SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLS 56

Query: 55 NETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADV 95
          N  +L  +     + V  ++T   ++FI++           
Sbjct: 57 NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKN 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	99.96
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	82.87

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.8e-30  Score=177.10  Aligned_cols=92  Identities=23%  Similarity=0.418  Sum_probs=85.3

Q ss_pred             EEEEEEcCCCCeeEEEcCCCc-------hhHHHHHHHHHhhhhhhhhhccCCCCCCCCCcccccccceeecCeEEEEEEe
Q 034015            3 ACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLT   75 (106)
Q Consensus         3 ~~~aIIg~~d~PLy~~~~~~~-------~~~l~~~fi~h~SLDiiee~~~~~~~~~~~~~~~yLg~l~~~~~~~vygyvT   75 (106)
                      ++++|||++|+|||+++|++.       +..+..||++|+|||++|+++|.+       +++|||+|+++++++||||+|
T Consensus         5 y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~-------~~~~l~~l~~~~~~~v~~y~T   77 (140)
T d2j3wa1           5 FYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-------NNMYLKTVDKFNEWFVSAFVT   77 (140)
T ss_dssp             EEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-------SCSEEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccC-------CCccceeEEecCCEEEEEEEc
Confidence            799999999999999999764       446779999999999999999976       689999999999999999999


Q ss_pred             cCCeEEEEEEcCCCCCchhHHHHhhhcc
Q 034015           76 NTKVKFILVTTDLDVRDADVRNVSVTIS  103 (106)
Q Consensus        76 ~t~~Kfil~~~~~~~~d~~Ik~ff~~i~  103 (106)
                      +||+||||+++.+  +++.+|+||++++
T Consensus        78 ~tg~Kfvl~td~~--~~~~i~~~~~~v~  103 (140)
T d2j3wa1          78 AGHMRFIMLHDVR--QEDGIKNFFTDVY  103 (140)
T ss_dssp             TTCCEEEEEESSC--CHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCC--cchHHHHHHHHHH
Confidence            9999999999887  8899999999986