Citrus Sinensis ID: 034029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MKPAAANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCCEQV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccEEcccccccccccccccc
Coil and Loop (DISEMBL)
mkpaaanttapidlwhspipylFTSLALVLVLIAVALVLLLCSYHkrysnsssgngrdqenqpavlpkvldpepkvVVIMagddkprylatqatisskpccceqv
Flexible Loop (DISEMBL)
mkpaaanttapidlwhSPIPYLFTSLALVLVLIAVALVLLLCSYHKRysnsssgngrdqenqpavlpkvldpepKVVVIMAGDDKPRYLATqatisskpccceqv
Low Complexity Region (SEG)
MKPAAANTTAPIDLWHSPIPYLFTSlalvlvliavalvlllCSYHKRYSNSSSGNGRDQENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCCEQV
Disordered region (IsUnstruct)
*********APIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKR***************************KVVVIMAGDDKPRYLATQATI**********
Disordered Region (DISOPRED)
***************HSPIPYLFTSLALVLVLIAVALVLLLC********************************KVVVIMAGDDKPRYLATQATISSKPCCC***
Disordered Region (DISEMBL)
********TAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRY*************QPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCCEQV
Disordered Region (DISPRO)
*************LWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKR**********************LDPEPKVVVIMAGDDKPRYLATQATISSKPC*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKPAAANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCCEQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q8S8A0	156	Protein GLUTAMINE DUMPER	yes	no	0.895	0.602	0.47	4e-15
O81775	158	Protein GLUTAMINE DUMPER	no	no	0.8	0.531	0.489	2e-14
Q9SW07	129	Protein GLUTAMINE DUMPER	no	no	0.923	0.751	0.442	2e-13
Q9FHH5	148	Protein GLUTAMINE DUMPER	no	no	0.838	0.594	0.436	4e-11
Q3E965	131	Protein GLUTAMINE DUMPER	no	no	0.704	0.564	0.454	1e-06
Q3EAV6	111	Protein GLUTAMINE DUMPER	no	no	0.771	0.729	0.435	0.0001
Q3E8L0	97	Protein GLUTAMINE DUMPER	no	no	0.714	0.773	0.357	0.0002

>sp|Q8S8A0|GDU4_ARATH Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 6   ANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHK-RYSNSSSGNGRDQENQPA 64
            N   PI  WHSP+PYLF  LA +L LIA AL++L CSY +   S   SG   D+E +  
Sbjct: 24  GNHRPPISPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESR 83

Query: 65  VLPKVLDP--EPKVVVIMAGDDKPRYLATQATISSKPCCC 102
              K      E KV+VIMAGDD PR+LAT A   +  C C
Sbjct: 84  SGVKAASAACEEKVLVIMAGDDLPRFLATPA---ANKCMC 120

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.
Arabidopsis thaliana (taxid: 3702)

>sp|O81775|GDU1_ARATH Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana GN=GDU1 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 15  WHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGR--DQENQPAVLPKVLDP 72
           WHSP+PYLF  LA +L LIA AL++L CSY  R S+S   +G+  D+E +     K  + 
Sbjct: 30  WHSPVPYLFGGLAAMLGLIAFALLILACSYW-RLSSSGEEDGQNVDEEKESRSGDKAANG 88

Query: 73  --EPKVVVIMAGDDKPRYLATQATISSKPCCC 102
             E K +VIMAG+D PRYLAT A    K C C
Sbjct: 89  AYEEKFLVIMAGEDLPRYLATPAM---KKCTC 117

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Required the interaction with the RING-type E3 ubiquitin-protein ligase LOG2 to fulfill its function. Plays a role in the Gln export at hydathodes, at xylem parenchyma into xylem sap and from mesophyll into leaf apoplasm. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW07|GDU2_ARATH Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana GN=GDU2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 4   AAANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSS-----SGNGRD 58
           A+++   P   WHSP+PYLF  LA +L LI VAL++L CSY  R S S+     +G+   
Sbjct: 17  ASSSMVVPHSPWHSPVPYLFGGLAAMLALICVALLILACSYW-RLSGSAERDLEAGDDAK 75

Query: 59  QENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCC 102
            +N          PE K +VIMAGD +P YLAT AT S + C C
Sbjct: 76  PDNDTNKTKHTEMPE-KFLVIMAGDVRPTYLATPATRSEQSCTC 118

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHH5|GDU3_ARATH Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 58/103 (56%), Gaps = 15/103 (14%)

Query: 10  APIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHK--RYSNSSSGNGRDQE------- 60
            P   WHSP+PYLF  LA +L LIA AL++L CSY +   Y +      R+++       
Sbjct: 23  GPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDVK 82

Query: 61  -NQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCC 102
            ++ AV P  L PE K +VIMAG+ KP YLAT    S K C C
Sbjct: 83  PDKTAVKPVAL-PE-KFLVIMAGNVKPTYLATP---SVKTCTC 120

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E965|GDU5_ARATH Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana GN=GDU5 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 15  WHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQENQPAVLPKVLDPEP 74
           W +P+PYLF  LA +L LIA AL+LL CSY  R S  +    +  E+   V+ K    E 
Sbjct: 28  WRTPVPYLFGGLAAMLGLIAFALLLLACSYW-RLSRQTEDEEKQTESGEKVVAKAF--EE 84

Query: 75  KVVVIMAGDDKPRYLAT 91
           K++VIMAG + P +LAT
Sbjct: 85  KILVIMAGQNNPTFLAT 101

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAV6|GDU6_ARATH Protein GLUTAMINE DUMPER 6 OS=Arabidopsis thaliana GN=GDU6 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 4/85 (4%)

Query: 9  TAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQENQPA---V 65
          T  +++W SP+PYLF  L L+++LIA+AL+ L+C+ H++ S+SS+ N  D+E+       
Sbjct: 4  TPKVEIWKSPVPYLFGGLFLLVLLIALALLSLVCT-HQKPSSSSNNNHMDEEDDVGDKDA 62

Query: 66 LPKVLDPEPKVVVIMAGDDKPRYLA 90
           P   +  PK+VVI+AGD+KP  LA
Sbjct: 63 KPITREYLPKIVVILAGDNKPTCLA 87

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E8L0|GDU7_ARATH Protein GLUTAMINE DUMPER 7 OS=Arabidopsis thaliana GN=GDU7 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 17 SPIPYLFTSLALVLVLIAVALVLL-LCSYHKRYSNS--SSGNGRDQENQPAVLPKVLDPE 73
          SPI     +  ++L L A++L  +    YHK+ SNS      G+ Q  +P      LD E
Sbjct: 20 SPILSKICAWGVMLGLFALSLFAMAYACYHKQTSNSCIEEKQGKKQVLKP------LDME 73

Query: 74 PKVVVIMAGDDKPRYLATQATISS 97
          PK+VVIMAG++ P + A    I++
Sbjct: 74 PKIVVIMAGNENPTFFAKPTQINA 97

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
224127540	88	predicted protein [Populus trichocarpa]	0.780	0.931	0.516	6e-15
255579958	115	conserved hypothetical protein [Ricinus	0.857	0.782	0.489	7e-15
356567160	123	PREDICTED: uncharacterized protein LOC10	0.961	0.821	0.450	8e-15
449438981	105	PREDICTED: protein GLUTAMINE DUMPER 4-li	0.857	0.857	0.514	1e-14
449531155	105	PREDICTED: protein GLUTAMINE DUMPER 4-li	0.857	0.857	0.514	2e-14
297821831	160	hypothetical protein ARALYDRAFT_481335 [	0.885	0.581	0.457	2e-14
255579956	124	conserved hypothetical protein [Ricinus	0.723	0.612	0.519	4e-14
297802864	157	hypothetical protein ARALYDRAFT_913294 [	0.8	0.535	0.5	1e-13
18400628	156	glutamine dumper 4 [Arabidopsis thaliana	0.895	0.602	0.47	2e-13
388505148	135	unknown [Medicago truncatula]	0.847	0.659	0.483	2e-13

>gi|224127540|ref|XP_002329303.1| predicted protein [Populus trichocarpa] gi|222870757|gb|EEF07888.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 11/93 (11%)

Query: 1  MKPAAANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQE 60
          M+P++ ++T+ I++W SP PYLF SL L+L +IAVAL  L CSY   Y NSS     DQE
Sbjct: 1  MRPSS-DSTSTINVWRSPTPYLFGSLGLLLAIIAVALTSLACSY---YRNSSG----DQE 52

Query: 61 NQPAVLPK---VLDPEPKVVVIMAGDDKPRYLA 90
           +PA +     VL  EP++VV+MAG+DKP YLA
Sbjct: 53 EKPAAMLTSMPVLHAEPEIVVVMAGEDKPTYLA 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579958|ref|XP_002530814.1| conserved hypothetical protein [Ricinus communis] gi|223529635|gb|EEF31582.1| conserved hypothetical protein [Ricinus communis]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 2/92 (2%)

Query: 1  MKPAA-ANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQ 59
          M+P + + TTA    W SP+PYLF  LAL+L +IAVAL++L CSY K  S+ S G+G ++
Sbjct: 1  MRPVSNSTTTAGFWHWSSPMPYLFGGLALMLGVIAVALIILACSYRKSLSDESRGDGHEE 60

Query: 60 ENQPAVLPKVLDP-EPKVVVIMAGDDKPRYLA 90
          +         +D  EPK+VVIMAGDD P +LA
Sbjct: 61 KPGAKQAELTVDSDEPKIVVIMAGDDNPTFLA 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567160|ref|XP_003551789.1| PREDICTED: uncharacterized protein LOC100781671 [Glycine max]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 1   MKPAAANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQE 60
           + P++    + +++W SPIPYLF  LA++L +I++ALV+L+CSY KR S SSS    D +
Sbjct: 7   VSPSSPMRASGVNIWKSPIPYLFGGLAVMLAIISMALVILVCSYRKRDSQSSSEVNEDVK 66

Query: 61  NQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCC 102
           +Q        + EP+V+VIMAGD  P YLA   T SS  C C
Sbjct: 67  SQAMANNLETNSEPEVLVIMAGDHNPTYLAKPIT-SSIFCTC 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438981|ref|XP_004137266.1| PREDICTED: protein GLUTAMINE DUMPER 4-like [Cucumis sativus]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 62/101 (61%), Gaps = 11/101 (10%)

Query: 3   PAAANTTAPIDL----WHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNG-- 56
           P+  N+T PID     WHSPIPYLFT LA+VL LIAVAL++L CSY     +S S +G  
Sbjct: 8   PSLRNSTDPIDTGFGNWHSPIPYLFTGLAIVLGLIAVALLVLSCSYLHSPPDSDSSSGPN 67

Query: 57  --RDQENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATI 95
              D+E  P       D EP +VVIMAGDD P + A QA I
Sbjct: 68  AATDEEKPPN---HSQDSEPTIVVIMAGDDNPTFFAKQAAI 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531155|ref|XP_004172553.1| PREDICTED: protein GLUTAMINE DUMPER 4-like [Cucumis sativus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 61/101 (60%), Gaps = 11/101 (10%)

Query: 3   PAAANTTAPIDL----WHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNG-- 56
           P+  N+T PID     WHSPIPYLFT LA VL LIAVAL++L CSY     +S S +G  
Sbjct: 8   PSLRNSTDPIDTGFGNWHSPIPYLFTGLATVLGLIAVALLVLSCSYLHSPPDSDSSSGPN 67

Query: 57  --RDQENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATI 95
              D+E  P       D EP +VVIMAGDD P + A QA I
Sbjct: 68  AATDEEKPPN---HSQDSEPTIVVIMAGDDNPTFFAKQAAI 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821831|ref|XP_002878798.1| hypothetical protein ARALYDRAFT_481335 [Arabidopsis lyrata subsp. lyrata] gi|297324637|gb|EFH55057.1| hypothetical protein ARALYDRAFT_481335 [Arabidopsis lyrata subsp. lyrata]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 62/105 (59%), Gaps = 12/105 (11%)

Query: 6   ANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYS----NSSSGNG----R 57
            N   PI  WHSP+PYLF  LA +L LIA AL++L CSY  R+S    +S  GNG     
Sbjct: 24  GNHRPPISPWHSPVPYLFGGLAAMLGLIAFALLILACSYW-RFSTTSDDSGEGNGGGVDE 82

Query: 58  DQENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCC 102
           ++E++  V       E K++VIMAGDD PR+LAT A   +  C C
Sbjct: 83  EKESRSGVKAASAAYEEKILVIMAGDDLPRFLATPA---ANKCMC 124

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579956|ref|XP_002530813.1| conserved hypothetical protein [Ricinus communis] gi|223529634|gb|EEF31581.1| conserved hypothetical protein [Ricinus communis]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 15 WHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQENQPAVLPKVLDP-E 73
          W SPIPYLF  LAL+L +IAVAL++L CSY K  SN S+ +G +++     +  ++D  E
Sbjct: 19 WSSPIPYLFGGLALILGIIAVALIILACSYRKSLSNESTEDGHEEKPGARQVEIMVDSDE 78

Query: 74 PKVVVIMAGDDKPRYLA 90
          PK+ VIMAGDD P +LA
Sbjct: 79 PKIAVIMAGDDNPTFLA 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802864|ref|XP_002869316.1| hypothetical protein ARALYDRAFT_913294 [Arabidopsis lyrata subsp. lyrata] gi|297315152|gb|EFH45575.1| hypothetical protein ARALYDRAFT_913294 [Arabidopsis lyrata subsp. lyrata]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 15  WHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGR--DQENQPAVLPKVLDP 72
           WHSP+PYLF  LA +L LIA AL++L CSY  R S+S  G+G+  D+E +     K    
Sbjct: 30  WHSPVPYLFGGLAAMLGLIAFALLILACSYW-RLSSSGEGDGQNVDEEKESRSGDKAAKG 88

Query: 73  --EPKVVVIMAGDDKPRYLATQATISSKPCCC 102
             E K +VIMAG+D PRYLAT A    K C C
Sbjct: 89  AYEEKFLVIMAGEDLPRYLATPAM---KKCTC 117

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400628|ref|NP_565577.1| glutamine dumper 4 [Arabidopsis thaliana] gi|75160399|sp|Q8S8A0.1|GDU4_ARATH RecName: Full=Protein GLUTAMINE DUMPER 4 gi|20198236|gb|AAM15477.1| Expressed protein [Arabidopsis thaliana] gi|88900418|gb|ABD57521.1| At2g24762 [Arabidopsis thaliana] gi|330252530|gb|AEC07624.1| glutamine dumper 4 [Arabidopsis thaliana]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 57/100 (57%), Gaps = 6/100 (6%)

Query: 6   ANTTAPIDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHK-RYSNSSSGNGRDQENQPA 64
            N   PI  WHSP+PYLF  LA +L LIA AL++L CSY +   S   SG   D+E +  
Sbjct: 24  GNHRPPISPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESR 83

Query: 65  VLPKVLDP--EPKVVVIMAGDDKPRYLATQATISSKPCCC 102
              K      E KV+VIMAGDD PR+LAT A   +  C C
Sbjct: 84  SGVKAASAACEEKVLVIMAGDDLPRFLATPA---ANKCMC 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505148|gb|AFK40640.1| unknown [Medicago truncatula]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 4/93 (4%)

Query: 12  IDLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYSNSSSGNGRDQENQPAVLPKV-- 69
           I +W SPIPYLF  LA++L+LI+VALV+L+CSY KR  +SS  +  D+E +  +   +  
Sbjct: 20  IKIWQSPIPYLFGGLAIMLILISVALVILVCSYKKR-GSSSQSSNSDEEMKQVMSKNIEK 78

Query: 70  LDPEPKVVVIMAGDDKPRYLATQATI-SSKPCC 101
           ++ EP+V+VIMAG+DKP Y+A    I +S P C
Sbjct: 79  INSEPEVLVIMAGEDKPTYIAKPIIITTSLPYC 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:505006270	156	GDU4 "AT2G24762" [Arabidopsis	0.885	0.596	0.393	9.4e-11
TAIR|locus:2117517	129	GDU2 "AT4G25760" [Arabidopsis	0.923	0.751	0.355	8.4e-10
TAIR|locus:2124894	158	GDU1 "glutamine dumper 1" [Ara	0.838	0.556	0.385	1.1e-09
TAIR|locus:1005716497	111	GDU6 "AT3G30725" [Arabidopsis	0.914	0.864	0.317	7.6e-09
TAIR|locus:504954872	148	GDU3 "AT5G57685" [Arabidopsis	0.838	0.594	0.349	6.8e-08
TAIR|locus:2149448	131	GDU5 "AT5G24920" [Arabidopsis	0.771	0.618	0.313	1e-06
TAIR|locus:2166635	97	GDU7 "AT5G38770" [Arabidopsis	0.476	0.515	0.425	3.9e-05

TAIR|locus:505006270 GDU4 "AT2G24762" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 39/99 (39%), Positives = 47/99 (47%)

Query:     7 NTTAPIDLWHSPIPYLFTSXXXXXXXXXXXXXXXXCSYHK-RYSNSSSGNGRDQENQPAV 65
             N   PI  WHSP+PYLF                  CSY +   S   SG   D+E +   
Sbjct:    25 NHRPPISPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRS 84

Query:    66 LPKVLDP--EPKVVVIMAGDDKPRYLATQATISSKPCCC 102
               K      E KV+VIMAGDD PR+LAT A  ++K C C
Sbjct:    85 GVKAASAACEEKVLVIMAGDDLPRFLATPA--ANK-CMC 120

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2117517 GDU2 "AT4G25760" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 37/104 (35%), Positives = 48/104 (46%)

Query:     4 AAANTTAPIDLWHSPIPYLFTSXXXXXXXXXXXXXXXXCSYHKRYSNSS-----SGNGRD 58
             A+++   P   WHSP+PYLF                  CSY  R S S+     +G+   
Sbjct:    17 ASSSMVVPHSPWHSPVPYLFGGLAAMLALICVALLILACSYW-RLSGSAERDLEAGDDAK 75

Query:    59 QENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCC 102
              +N          PE K +VIMAGD +P YLAT AT S + C C
Sbjct:    76 PDNDTNKTKHTEMPE-KFLVIMAGDVRPTYLATPATRSEQSCTC 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2124894 GDU1 "glutamine dumper 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 37/96 (38%), Positives = 46/96 (47%)

Query:    11 PIDLWHSPIPYLFTSXXXXXXXXXXXXXXXXCSYHKRYSNSSSGNGR--DQENQPAVLPK 68
             P   WHSP+PYLF                  CSY  R S+S   +G+  D+E +     K
Sbjct:    26 PQSPWHSPVPYLFGGLAAMLGLIAFALLILACSYW-RLSSSGEEDGQNVDEEKESRSGDK 84

Query:    69 VLDP--EPKVVVIMAGDDKPRYLATQATISSKPCCC 102
               +   E K +VIMAG+D PRYLAT A    K C C
Sbjct:    85 AANGAYEEKFLVIMAGEDLPRYLATPAM---KKCTC 117

GO:0005634 "nucleus" evidence=IDA

GO:0010585 "glutamine secretion" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISS;IDA

GO:0080143 "regulation of amino acid export" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1005716497 GDU6 "AT3G30725" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 33/104 (31%), Positives = 50/104 (48%)

Query:     9 TAPIDLWHSPIPYLFTSXXXXXXXXXXXXXXXXCSYHKRYSNSSSGNGRDQENQPA---V 65
             T  +++W SP+PYLF                  C+ H++ S+SS+ N  D+E+       
Sbjct:     4 TPKVEIWKSPVPYLFGGLFLLVLLIALALLSLVCT-HQKPSSSSNNNHMDEEDDVGDKDA 62

Query:    66 LPKVLDPEPKVVVIMAGDDKPRYLATQATI----SSKPCCCEQV 105
              P   +  PK+VVI+AGD+KP  LA    +    S   C C+ V
Sbjct:    63 KPITREYLPKIVVILAGDNKPTCLAVPVVVPPPTSIFRCNCDNV 106

GO:0003674 "molecular_function" evidence=ND

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:504954872 GDU3 "AT5G57685" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 36/103 (34%), Positives = 47/103 (45%)

Query:    11 PIDLWHSPIPYLFTSXXXXXXXXXXXXXXXXCSYHKR--YSNSSSGNGRDQE-------- 60
             P   WHSP+PYLF                  CSY +   Y +      R+++        
Sbjct:    24 PHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLEVGDVKP 83

Query:    61 NQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISSKPCCCE 103
             ++ AV P  L PE K +VIMAG+ KP YLAT    S K C C+
Sbjct:    84 DKTAVKPVAL-PE-KFLVIMAGNVKPTYLATP---SVKTCTCD 121

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016021 "integral to membrane" evidence=RCA

GO:0032940 "secretion by cell" evidence=ISS

GO:0080143 "regulation of amino acid export" evidence=IMP

GO:0009615 "response to virus" evidence=IMP

GO:0019048 "virus-host interaction" evidence=IMP

TAIR|locus:2149448 GDU5 "AT5G24920" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 27/86 (31%), Positives = 40/86 (46%)

Query:    15 WHSPIPYLFTSXXXXXXXXXXXXXXXXCSYHKRYSNSSSGNGRDQENQPAVLPKVLDPEP 74
             W +P+PYLF                  CSY  R S  +    +  E+   V+ K    E 
Sbjct:    28 WRTPVPYLFGGLAAMLGLIAFALLLLACSYW-RLSRQTEDEEKQTESGEKVVAKAF--EE 84

Query:    75 KVVVIMAGDDKPRYLATQATISSKPC 100
             K++VIMAG + P +LAT   +++K C
Sbjct:    85 KILVIMAGQNNPTFLATP--VAAKIC 108

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2166635 GDU7 "AT5G38770" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query:    44 YHKRYSNSSSGNGRDQENQPAVLPKVLDPEPKVVVIMAGDDKPRYLATQATISS 97
             YHK+ SNS      +++ +  VL K LD EPK+VVIMAG++ P + A    I++
Sbjct:    48 YHKQTSNSCI---EEKQGKKQVL-KPLDMEPKIVVIMAGNENPTFFAKPTQINA 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105        89   0.00091  102 3  11 23  0.37    30
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.46u 0.17s 9.63t   Elapsed:  00:00:01
  Total cpu time:  9.46u 0.17s 9.63t   Elapsed:  00:00:01
  Start:  Fri May 10 12:21:26 2013   End:  Fri May 10 12:21:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0080143 "regulation of amino acid export" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01230017 hypothetical protein (88 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	89.33
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	87.72
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	85.97

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=89.33  E-value=0.47  Score=34.55  Aligned_cols=36  Identities=14%  Similarity=0.250  Sum_probs=24.1

Q ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034029           13 DLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYS   49 (105)
Q Consensus        13 ~~W~SPvPYLFgGLA~MlgLIAvALliLaCSy~K~~s   49 (105)
                      ..+..|+= ....|++|.|+|++.|||+-|-+|+...
T Consensus        59 h~fs~~~i-~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   59 HRFSEPAI-IGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             SSSS-TCH-HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cCccccce-eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34555542 4456889999999999998888765533

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=87.72  E-value=1.3  Score=26.82  Aligned_cols=30  Identities=13%  Similarity=0.443  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 034029           21 YLFTSLALVLVLIAVALVLLLCSYHKRYSN   50 (105)
Q Consensus        21 YLFgGLA~MlgLIAvALliLaCSy~K~~s~   50 (105)
                      -...|..+-+.+|.+..++-+|-|||...+
T Consensus         7 aIIv~V~vg~~iiii~~~~YaCcykk~~~~   36 (38)
T PF02439_consen    7 AIIVAVVVGMAIIIICMFYYACCYKKHRRQ   36 (38)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            356777888888888989999999997643

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=85.97  E-value=0.52  Score=33.67  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034029           13 DLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHKRYS   49 (105)
Q Consensus        13 ~~W~SPvPYLFgGLA~MlgLIAvALliLaCSy~K~~s   49 (105)
                      +..-+=.|||-+|=+++|.||-++|+.-.|.+||.+.
T Consensus        36 S~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~   72 (98)
T PF07204_consen   36 SSFVAYWPYLAAGGGLILILIIIALVCCCRAKHKTSA   72 (98)
T ss_pred             ehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHh
Confidence            3455567999999898888888888887888888543

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	90.91

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=90.91  E-value=0.71  Score=28.66  Aligned_cols=34  Identities=18%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHH---HHhhcccCCC
Q 034029           17 SPIPYLFTSLALVLVLIAVALVLL---LCSYHKRYSN   50 (105)
Q Consensus        17 SPvPYLFgGLA~MlgLIAvALliL---aCSy~K~~s~   50 (105)
                      +++|.-..-++++.||+-++|+++   -|-+.|+...
T Consensus         8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~   44 (54)
T 2knc_A            8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP   44 (54)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence            346666666677777777776655   5777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00