Citrus Sinensis ID: 034040

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEEcccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
mtsssapsrKALSKIASNRLQKELVEwqvnppagfkhkVTDNLQRWIIEvngapgtlyanetfelqvdfpehypmeapqviflppaplhphiysnghiclgiasf
Flexible Loop (DISEMBL)
mtsssapsrkaLSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF
Low Complexity Region (SEG)
MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF
Disordered region (IsUnstruct)
**********************ELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI***
Disordered Region (DISOPRED)
*********************KELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF
Disordered Region (DISEMBL)
*************KIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF
Disordered Region (DISPRO)
**************IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9FMM0	161	Probable ubiquitin-conjug	yes	no	0.971	0.633	0.862	2e-49
Q9FWT2	161	Probable ubiquitin-conjug	no	no	0.971	0.633	0.872	4e-49
P42743	161	Ubiquitin-conjugating enz	no	no	0.971	0.633	0.833	1e-47
O23239	161	Probable ubiquitin-conjug	no	no	0.971	0.633	0.794	5e-46
Q55EY8	149	Probable ubiquitin-conjug	yes	no	0.819	0.577	0.5	1e-21
Q8VDW4	151	Ubiquitin-conjugating enz	yes	no	0.819	0.569	0.477	7e-19
B5DEI4	151	Ubiquitin-conjugating enz	no	no	0.819	0.569	0.477	9e-19
Q96B02	151	Ubiquitin-conjugating enz	yes	no	0.819	0.569	0.477	9e-19
A6H795	151	Ubiquitin-conjugating enz	yes	no	0.819	0.569	0.477	9e-19
Q28FC1	151	Ubiquitin-conjugating enz	yes	no	0.819	0.569	0.477	2e-18

>sp|Q9FMM0|UBC18_ARATH Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1

 Score =  193 bits (491), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSS+PSRKALSKIA NRLQKEL EWQVNPP GFKH+VTDNLQ+W+IEV GAPGTLYAN
Sbjct: 1   MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET+ LQV+FP+HYPMEAPQVIF+PPAPLHPHIYSNGHICL I
Sbjct: 61  ETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDI 102

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q9FWT2|UBC16_ARATH Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 96/102 (94%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           M+SS APSRK LSKIA+NRLQKELVEWQ+NPP GFKHKVTDNLQRWIIEV GAPGTLYAN
Sbjct: 1   MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           +T++LQVDFPEHYPME+PQVIFL PAPLHPHIYSNGHICL I
Sbjct: 61  DTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDI 102

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P42743|UBC15_ARATH Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 94/102 (92%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSAPSRKALSKIA NRLQKEL EWQ+NPP GF+HKVTDNLQ+W I+V GAPGTLYAN
Sbjct: 1   MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQV+FPEHYPMEAPQV+F+ PAP HPHIYSNGHICL I
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDI 102

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|O23239|UBC17_ARATH Probable ubiquitin-conjugating enzyme E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1

 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 93/102 (91%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSS  +RK L+KIA+NRLQKE +EWQ NPP+GFKH+V+DNLQRWIIEV+G PGTLYAN
Sbjct: 1   MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQV+FPEHYPMEAPQVIF  PAPLHPHIYSNGHICL +
Sbjct: 61  ETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDV 102

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q55EY8|UBE2W_DICDI Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 59/86 (68%)

Query: 17  SNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPME 76
           + RLQKEL++ + NPP        DNL +W+I V+G  G++Y  E F+LQ  F   YP++
Sbjct: 6   AKRLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLD 65

Query: 77  APQVIFLPPAPLHPHIYSNGHICLGI 102
           +P+VIF+   P+HPHIYSNGHICL I
Sbjct: 66  SPEVIFIGTPPIHPHIYSNGHICLSI 91

Catalyzes the covalent attachment of ubiquitin to other proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8VDW4|UBE2W_MOUSE Ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=1 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 19  RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   YP 
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 76  EAPQVIFLPP-APLHPHIYSNGHICLGIAS 104
           ++PQV+F     P+HPH+YSNGHICL I +
Sbjct: 67  DSPQVMFTGENIPIHPHVYSNGHICLSILT 96

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Catalyzes monoubiquitination. Involved in degradation of misfolded chaperone substrates by mediating monoubiquitination of STUB1/CHIP, leading to recruitment of ATXN3 to monoubiquitinated STUB1/CHIP, and restriction of the length of ubiquitin chain attached to STUB1/CHIP substrates by ATXN3. After UV irradiation, but not after mitomycin-C (MMC) treatment, acts as a specific E2 ubiquitin-conjugating enzyme for the Fanconi anemia complex by associating with E3 ubiquitin-protein ligase FANCL and catalyzing monoubiquitination of FANCD2, a key step in the DNA damage pathway. In vitro catalyzes 'Lys-11'-linked polyubiquitination.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|B5DEI4|UBE2W_RAT Ubiquitin-conjugating enzyme E2 W OS=Rattus norvegicus GN=Ube2w PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 19  RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   YP 
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 76  EAPQVIFLPP-APLHPHIYSNGHICLGIAS 104
           ++PQV+F     P+HPH+YSNGHICL I +
Sbjct: 67  DSPQVMFTGENIPVHPHVYSNGHICLSILT 96

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Catalyzes monoubiquitination. Involved in degradation of misfolded chaperone substrates by mediating monoubiquitination of STUB1/CHIP, leading to recruitment of ATXN3 to monoubiquitinated STUB1/CHIP, and restriction of the length of ubiquitin chain attached to STUB1/CHIP substrates by ATXN3. After UV irradiation, but not after mitomycin-C (MMC) treatment, acts as a specific E2 ubiquitin-conjugating enzyme for the Fanconi anemia complex by associating with E3 ubiquitin-protein ligase FANCL and catalyzing monoubiquitination of FANCD2, a key step in the DNA damage pathway. In vitro catalyzes 'Lys-11'-linked polyubiquitination.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q96B02|UBE2W_HUMAN Ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 19  RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   YP 
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 76  EAPQVIFLPP-APLHPHIYSNGHICLGIAS 104
           ++PQV+F     P+HPH+YSNGHICL I +
Sbjct: 67  DSPQVMFTGENIPVHPHVYSNGHICLSILT 96

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Catalyzes monoubiquitination. Involved in degradation of misfolded chaperone substrates by mediating monoubiquitination of STUB1/CHIP, leading to recruitment of ATXN3 to monoubiquitinated STUB1/CHIP, and restriction of the length of ubiquitin chain attached to STUB1/CHIP substrates by ATXN3. After UV irradiation, but not after mitomycin-C (MMC) treatment, acts as a specific E2 ubiquitin-conjugating enzyme for the Fanconi anemia complex by associating with E3 ubiquitin-protein ligase FANCL and catalyzing monoubiquitination of FANCD2, a key step in the DNA damage pathway. In vitro catalyzes 'Lys-11'-linked polyubiquitination.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|A6H795|UBE2W_BOVIN Ubiquitin-conjugating enzyme E2 W OS=Bos taurus GN=UBE2W PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 19  RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   YP 
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 76  EAPQVIFLPP-APLHPHIYSNGHICLGIAS 104
           ++PQV+F     P+HPH+YSNGHICL I +
Sbjct: 67  DSPQVMFTGENIPVHPHVYSNGHICLSILT 96

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Catalyzes monoubiquitination. Involved in degradation of misfolded chaperone substrates by mediating monoubiquitination of STUB1/CHIP, leading to recruitment of ATXN3 to monoubiquitinated STUB1/CHIP, and restriction of the length of ubiquitin chain attached to STUB1/CHIP substrates by ATXN3. After UV irradiation, but not after mitomycin-C (MMC) treatment, acts as a specific E2 ubiquitin-conjugating enzyme for the Fanconi anemia complex by associating with E3 ubiquitin-protein ligase FANCL and catalyzing monoubiquitination of FANCD2, a key step in the DNA damage pathway. In vitro catalyzes 'Lys-11'-linked polyubiquitination.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q28FC1|UBE2W_XENTR Ubiquitin-conjugating enzyme E2 W OS=Xenopus tropicalis GN=ube2w PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 4/90 (4%)

Query: 19  RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           RLQKEL+  Q  PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   YP 
Sbjct: 7   RLQKELLALQNEPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 76  EAPQVIFLPP-APLHPHIYSNGHICLGIAS 104
           ++PQV+F     P+HPH+YSNGHICL I +
Sbjct: 67  DSPQVMFTGDNIPVHPHVYSNGHICLSILT 96

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Catalyzes monoubiquitination. Involved in degradation of misfolded chaperone substrate and DNA repair.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
148841111	161	ubiquitin conjugating enzyme [Gossypium	0.971	0.633	0.931	6e-51
225458159	161	PREDICTED: probable ubiquitin-conjugatin	0.971	0.633	0.901	6e-50
225431261	161	PREDICTED: probable ubiquitin-conjugatin	0.971	0.633	0.911	2e-49
449457512	161	PREDICTED: probable ubiquitin-conjugatin	0.971	0.633	0.901	1e-48
224082922	161	predicted protein [Populus trichocarpa]	0.971	0.633	0.892	1e-48
224097075	161	predicted protein [Populus trichocarpa]	0.971	0.633	0.901	2e-48
224066115	161	predicted protein [Populus trichocarpa]	0.971	0.633	0.872	3e-48
224133782	161	predicted protein [Populus trichocarpa]	0.971	0.633	0.892	3e-48
255560990	161	Ubiquitin-conjugating enzyme E2-18 kDa,	0.971	0.633	0.901	7e-48
255538766	161	Ubiquitin-conjugating enzyme E2-18 kDa,	0.971	0.633	0.862	9e-48

>gi|148841111|gb|ABR14728.1| ubiquitin conjugating enzyme [Gossypium hirsutum]

 Score =  204 bits (518), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/102 (93%), Positives = 99/102 (97%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSA SRKALSKIA NRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGT+YAN
Sbjct: 1   MTSSSAHSRKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTIYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPEHYPMEAPQVIF+PPAPLHPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFIPPAPLHPHIYSNGHICLDI 102

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458159|ref|XP_002280882.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Vitis vinifera] gi|147844523|emb|CAN82081.1| hypothetical protein VITISV_011314 [Vitis vinifera] gi|302142559|emb|CBI19762.3| unnamed protein product [Vitis vinifera]

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 99/102 (97%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSAPSRK LSKIA NRLQKELVEWQVNPPAGFKHKVTDNLQRW+IEVNGAPGTLYAN
Sbjct: 1   MTSSSAPSRKVLSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           E+++LQVDFPE+YPMEAPQV+F+PPAPLHPHIYSNGHICL I
Sbjct: 61  ESYQLQVDFPENYPMEAPQVVFVPPAPLHPHIYSNGHICLDI 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431261|ref|XP_002274933.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 16 [Vitis vinifera] gi|297735076|emb|CBI17438.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/102 (91%), Positives = 98/102 (96%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSA SRKALSKIA NRLQKELVEWQVNPPAGFKHKVTDNLQRW+IEV+GAPGTLYAN
Sbjct: 1   MTSSSATSRKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVHGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           E+++LQVDFPEHYPMEAPQVIFL PAPLHPHIYSNGHICL I
Sbjct: 61  ESYQLQVDFPEHYPMEAPQVIFLQPAPLHPHIYSNGHICLDI 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457512|ref|XP_004146492.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 16-like [Cucumis sativus]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 96/102 (94%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSS  + KALSKIA NRLQKELVEWQVNPPAGFKHKVTDNLQRW+IEVNGAPGTLYAN
Sbjct: 1   MTSSSDSALKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPEHYPMEAPQVIFL PAPLHPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDI 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082922|ref|XP_002306892.1| predicted protein [Populus trichocarpa] gi|118487824|gb|ABK95735.1| unknown [Populus trichocarpa] gi|222856341|gb|EEE93888.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (499), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/102 (89%), Positives = 96/102 (94%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSA SRKALSKIA NRLQKEL EWQ+NPP+GFKHKVTDNLQRW+IEVNGA GTLYAN
Sbjct: 1   MTSSSALSRKALSKIACNRLQKELAEWQLNPPSGFKHKVTDNLQRWVIEVNGAAGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPEHYPMEAPQVIF PPAPLHPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFAPPAPLHPHIYSNGHICLDI 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097075|ref|XP_002310827.1| predicted protein [Populus trichocarpa] gi|222853730|gb|EEE91277.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 96/102 (94%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSA +RKALSKIA NRLQKELVEWQVNPP GFKHKVTDNLQRW+IEV GAPGTLYAN
Sbjct: 1   MTSSSATTRKALSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVIEVIGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPEHYPMEAPQVIFL PAPLHPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDI 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066115|ref|XP_002302012.1| predicted protein [Populus trichocarpa] gi|118484075|gb|ABK93923.1| unknown [Populus trichocarpa] gi|222843738|gb|EEE81285.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/102 (87%), Positives = 95/102 (93%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSA SRKALSKIA NRLQKEL EWQ++PP+GFKHKVTDNLQRW+IE NGA GTLYAN
Sbjct: 1   MTSSSASSRKALSKIACNRLQKELTEWQLSPPSGFKHKVTDNLQRWVIEANGAAGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPEHYPMEAPQVIF PPAPLHPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFAPPAPLHPHIYSNGHICLDI 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133782|ref|XP_002327679.1| predicted protein [Populus trichocarpa] gi|222836764|gb|EEE75157.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/102 (89%), Positives = 95/102 (93%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSS  +RKALSKIA NRLQKELVEWQVNPP GFKHKVTDNLQRW+IEV GAPGTLYAN
Sbjct: 1   MTSSSTTTRKALSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVIEVIGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPEHYPMEAPQVIFL PAPLHPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDI 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560990|ref|XP_002521507.1| Ubiquitin-conjugating enzyme E2-18 kDa, putative [Ricinus communis] gi|223539185|gb|EEF40778.1| Ubiquitin-conjugating enzyme E2-18 kDa, putative [Ricinus communis]

 Score =  194 bits (492), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 96/102 (94%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSA SRKALSKIA NRLQKELVEWQVNPP+GFKHKVTDNLQRW+IEV GAPGTLYAN
Sbjct: 1   MTSSSAASRKALSKIACNRLQKELVEWQVNPPSGFKHKVTDNLQRWVIEVIGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPEHYPMEAPQVIFL PAP HPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPEHYPMEAPQVIFLHPAPPHPHIYSNGHICLDI 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538766|ref|XP_002510448.1| Ubiquitin-conjugating enzyme E2-18 kDa, putative [Ricinus communis] gi|223551149|gb|EEF52635.1| Ubiquitin-conjugating enzyme E2-18 kDa, putative [Ricinus communis]

 Score =  193 bits (491), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 88/102 (86%), Positives = 95/102 (93%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           MTSSSA SRK L KIA +RLQKEL EWQ+NPP GFKHKVTDNLQRW+IEVNGAPGTLYAN
Sbjct: 1   MTSSSATSRKVLGKIACSRLQKELAEWQLNPPTGFKHKVTDNLQRWVIEVNGAPGTLYAN 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ET++LQVDFPE+YPMEAPQVIF+PPAPLHPHIYSNGHICL I
Sbjct: 61  ETYQLQVDFPENYPMEAPQVIFIPPAPLHPHIYSNGHICLDI 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2159981	161	UBC18 "AT5G42990" [Arabidopsis	0.971	0.633	0.862	4.2e-47
TAIR|locus:2018447	161	UBC16 "AT1G75440" [Arabidopsis	0.971	0.633	0.872	8.8e-47
TAIR|locus:2028255	161	ATUBC2-1 "AT1G45050" [Arabidop	0.971	0.633	0.833	2.7e-45
TAIR|locus:2115425	161	UBC17 "AT4G36410" [Arabidopsis	0.971	0.633	0.794	1.3e-43
DICTYBASE|DDB_G0268938	149	ube2w "ubiquitin-conjugating e	0.819	0.577	0.5	4.9e-21
UNIPROTKB|F1NEJ7	154	UBE2W "Uncharacterized protein	0.876	0.597	0.458	3.5e-20
UNIPROTKB|F1Q244	151	UBE2W "Uncharacterized protein	0.847	0.589	0.483	4.4e-20
UNIPROTKB|F1NEJ6	151	UBE2W "Uncharacterized protein	0.838	0.582	0.467	1.2e-19
MGI|MGI:1914049	151	Ube2w "ubiquitin-conjugating e	0.8	0.556	0.488	2.5e-19
RGD|6503620	161	Ube2w "ubiquitin-conjugating e	0.819	0.534	0.477	2.5e-19

TAIR|locus:2159981 UBC18 "AT5G42990" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 88/102 (86%), Positives = 96/102 (94%)

Query:     1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
             MTSSS+PSRKALSKIA NRLQKEL EWQVNPP GFKH+VTDNLQ+W+IEV GAPGTLYAN
Sbjct:     1 MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYAN 60

Query:    61 ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             ET+ LQV+FP+HYPMEAPQVIF+PPAPLHPHIYSNGHICL I
Sbjct:    61 ETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDI 102

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2018447 UBC16 "AT1G75440" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 89/102 (87%), Positives = 96/102 (94%)

Query:     1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
             M+SS APSRK LSKIA+NRLQKELVEWQ+NPP GFKHKVTDNLQRWIIEV GAPGTLYAN
Sbjct:     1 MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYAN 60

Query:    61 ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             +T++LQVDFPEHYPME+PQVIFL PAPLHPHIYSNGHICL I
Sbjct:    61 DTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDI 102

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006301 "postreplication repair" evidence=RCA

TAIR|locus:2028255 ATUBC2-1 "AT1G45050" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 85/102 (83%), Positives = 94/102 (92%)

Query:     1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
             MTSSSAPSRKALSKIA NRLQKEL EWQ+NPP GF+HKVTDNLQ+W I+V GAPGTLYAN
Sbjct:     1 MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYAN 60

Query:    61 ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             ET++LQV+FPEHYPMEAPQV+F+ PAP HPHIYSNGHICL I
Sbjct:    61 ETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDI 102

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0009910 "negative regulation of flower development" evidence=IGI

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2115425 UBC17 "AT4G36410" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 81/102 (79%), Positives = 93/102 (91%)

Query:     1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
             MTSSS  +RK L+KIA+NRLQKE +EWQ NPP+GFKH+V+DNLQRWIIEV+G PGTLYAN
Sbjct:     1 MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYAN 60

Query:    61 ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             ET++LQV+FPEHYPMEAPQVIF  PAPLHPHIYSNGHICL +
Sbjct:    61 ETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDV 102

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

DICTYBASE|DDB_G0268938 ube2w "ubiquitin-conjugating enzyme E2W" [Dictyostelium discoideum (taxid:44689)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 43/86 (50%), Positives = 59/86 (68%)

Query:    17 SNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPME 76
             + RLQKEL++ + NPP        DNL +W+I V+G  G++Y  E F+LQ  F   YP++
Sbjct:     6 AKRLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLD 65

Query:    77 APQVIFLPPAPLHPHIYSNGHICLGI 102
             +P+VIF+   P+HPHIYSNGHICL I
Sbjct:    66 SPEVIFIGTPPIHPHIYSNGHICLSI 91

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|F1NEJ7 UBE2W "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 44/96 (45%), Positives = 64/96 (66%)

Query:    11 ALSKIASNRLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQV 67
             +L+ + + RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L  
Sbjct:     2 SLTAVVNKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 61

Query:    68 DFPEHYPMEAPQVIFLPP-APLHPHIYSNGHICLGI 102
              F   YP ++PQV+F     P+HPH+YSNGHICL I
Sbjct:    62 KFSSRYPFDSPQVMFTGDNIPVHPHVYSNGHICLSI 97

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

UNIPROTKB|F1Q244 UBE2W "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 45/93 (48%), Positives = 61/93 (65%)

Query:    14 KIASNRLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
             KI   RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F 
Sbjct:     2 KIREKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query:    71 EHYPMEAPQVIFLPP-APLHPHIYSNGHICLGI 102
               YP ++PQV+F     P+HPH+YSNGHICL I
Sbjct:    62 SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSI 94

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|F1NEJ6 UBE2W "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query:    15 IASNRLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
             + + RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F  
Sbjct:     3 VVNKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSS 62

Query:    72 HYPMEAPQVIFLPP-APLHPHIYSNGHICLGI 102
              YP ++PQV+F     P+HPH+YSNGHICL I
Sbjct:    63 RYPFDSPQVMFTGDNIPVHPHVYSNGHICLSI 94

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

MGI|MGI:1914049 Ube2w "ubiquitin-conjugating enzyme E2W (putative)" [Mus musculus (taxid:10090)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/88 (48%), Positives = 59/88 (67%)

Query:    19 RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
             RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   YP 
Sbjct:     7 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query:    76 EAPQVIFLPP-APLHPHIYSNGHICLGI 102
             ++PQV+F     P+HPH+YSNGHICL I
Sbjct:    67 DSPQVMFTGENIPIHPHVYSNGHICLSI 94

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006281 "DNA repair" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=ISO;IDA;IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO;IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

GO:0071218 "cellular response to misfolded protein" evidence=IMP

RGD|6503620 Ube2w "ubiquitin-conjugating enzyme E2W" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/90 (47%), Positives = 60/90 (66%)

Query:    17 SNRLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
             + RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   Y
Sbjct:    15 NKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 74

Query:    74 PMEAPQVIFLPP-APLHPHIYSNGHICLGI 102
             P ++PQV+F     P+HPH+YSNGHICL I
Sbjct:    75 PFDSPQVMFTGENIPVHPHVYSNGHICLSI 104

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

GO:0071218 "cellular response to misfolded protein" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMM0	UBC18_ARATH	6, ., 3, ., 2, ., 1, 9	0.8627	0.9714	0.6335	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.946
3rd Layer	6.3.2	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014543001 RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (161 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	7e-33
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	3e-28
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	1e-27
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	5e-21
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	9e-13
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	2e-11

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  110 bits (278), Expect = 7e-33
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 19  RLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           RLQKEL E   +PP G       DNL  W + + G  GT Y    F+L ++FPE YP + 
Sbjct: 1   RLQKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKP 60

Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P+V F      HP++  +G ICL I
Sbjct: 61  PKVKFTTK-IYHPNVDPSGEICLDI 84

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 99.3 bits (248), Expect = 3e-28
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 19  RLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPME 76
           RL KEL E + +PP GF     D  NL  W   + G PGT Y    F+L ++FPE YP +
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFK 60

Query: 77  APQVIFLPPAPLHPHIYSNGHICLGI 102
            P+V F+     HP++ S+G ICL I
Sbjct: 61  PPKVKFITK-IYHPNVDSSGEICLDI 85

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 97.7 bits (244), Expect = 1e-27
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 17  SNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           S RLQKEL + + +PP+G   + V +NL  W   + G P T Y    F+L ++FPE YP 
Sbjct: 1   SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60

Query: 76  EAPQVIFLPPAPLHPHIYSNGHICLGI 102
           + P+V F+     HP++  NG ICL I
Sbjct: 61  KPPKVRFVTK-IYHPNVDENGKICLSI 86

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 81.2 bits (201), Expect = 5e-21
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFP 70
           S  A  RL KEL + Q +PP G        DNL  W   + G P T Y    F+L ++FP
Sbjct: 3   SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFP 62

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           E YP + P+V F      HP++  +G++CL I
Sbjct: 63  EDYPFKPPKVRFTTKI-FHPNVDPSGNVCLDI 93

Length = 153

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 59.8 bits (145), Expect = 9e-13
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
            S R++KE      +PP G K +    N + + I + G  GT Y    ++L++  PE YP
Sbjct: 3   ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYP 62

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ME P+V FL     HP+I   G ICL I
Sbjct: 63  MEPPKVRFLTKI-YHPNIDKLGRICLDI 89

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 15  IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A+ R+QKE  +   +PP+        +NL RW   + G   + YA   F L + FP  Y
Sbjct: 1   MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDY 60

Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 61  PFKPPKVQFTTKI-YHPNINSNGSICLDI 88

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.97
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.97
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.97
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.93
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.92
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.86
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.66
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.64
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.54
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.32
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	98.35
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.08
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.64
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	97.61
KOG3357	167	consensus Uncharacterized conserved protein [Funct	97.56
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	96.87
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.82
smart00591	107	RWD domain in RING finger and WD repeat containing	96.47
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	92.84
KOG4018	215	consensus Uncharacterized conserved protein, conta	91.64
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	84.75
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	83.26
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	80.08

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-39  Score=216.69  Aligned_cols=89  Identities=38%  Similarity=0.747  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      .+.+||++|+++|+++++.++++.+ ++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.| +||||||
T Consensus         5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t-~i~HPNV   83 (153)
T COG5078           5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT-KIFHPNV   83 (153)
T ss_pred             hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc-CCcCCCc
Confidence            3899999999999999999999999 55 9999999999999999999999999999999999999999999 8999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      |++|+|||+||+
T Consensus        84 ~~~G~vCLdIL~   95 (153)
T COG5078          84 DPSGNVCLDILK   95 (153)
T ss_pred             CCCCCChhHHHh
Confidence            999999999985

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-39  Score=214.34  Aligned_cols=88  Identities=43%  Similarity=0.782  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      +.+||.||+++|++++++|+++.+ ++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.| +||||||+.
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T-kIyHPNI~~   80 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT-KIYHPNIDS   80 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec-ccccCCcCc
Confidence            356999999999999999999998 899999999999999999999999999999999999999999999 899999999


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      .|+|||+||+
T Consensus        81 ~G~IclDILk   90 (148)
T KOG0417|consen   81 NGRICLDILK   90 (148)
T ss_pred             cccchHHhhh
Confidence            9999999996

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-37  Score=200.35  Aligned_cols=92  Identities=34%  Similarity=0.695  Sum_probs=89.4

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP   90 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP   90 (105)
                      |+..+-+||++|+++++++++.|++..+ ++|+..|.++|+||.+|||+||+|++.|.|.++||.+||.|+|.| ++|||
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs-~mFHP   79 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS-KMFHP   79 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee-eccCC
Confidence            5678899999999999999999999999 999999999999999999999999999999999999999999999 99999


Q ss_pred             cccCCCceEEecCC
Q 034040           91 HIYSNGHICLGIAS  104 (105)
Q Consensus        91 nv~~~G~iCl~iL~  104 (105)
                      |||++|.+||+||+
T Consensus        80 Nvya~G~iClDiLq   93 (152)
T KOG0419|consen   80 NVYADGSICLDILQ   93 (152)
T ss_pred             CcCCCCcchHHHHh
Confidence            99999999999985

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=7.3e-36  Score=201.51  Aligned_cols=88  Identities=38%  Similarity=0.676  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      +.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||++
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t-~i~HPNV~~   81 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLT-KIYHPNIDK   81 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEec-CCeeceECC
Confidence            579999999999999999999998 889999999999999999999999999999999999999999999 899999999


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|+||+++|+
T Consensus        82 ~G~iCl~iL~   91 (152)
T PTZ00390         82 LGRICLDILK   91 (152)
T ss_pred             CCeEECccCc
Confidence            9999999984

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=3.2e-35  Score=197.45  Aligned_cols=88  Identities=38%  Similarity=0.676  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      +.+||++|+++|++++++|+.+.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPNv~~   80 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTT-KIYHPNINS   80 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEec-CcccceECC
Confidence            468999999999999999999999 889999999999999999999999999999999999999999999 899999999


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|.||+++|+
T Consensus        81 ~G~iCl~il~   90 (147)
T PLN00172         81 NGSICLDILR   90 (147)
T ss_pred             CCEEEcccCc
Confidence            9999999984

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-34  Score=186.18  Aligned_cols=92  Identities=29%  Similarity=0.637  Sum_probs=88.6

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      |+..++|||++|+++|..++++|+.+.+  ++|.+.|.++|.||++|+|+||.|-.++.||.+||.+||+++|.- .+||
T Consensus         1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc-~~fH   79 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC-EMFH   79 (165)
T ss_pred             CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec-cccc
Confidence            4567899999999999999999999998  899999999999999999999999999999999999999999999 8999


Q ss_pred             ccccCCCceEEecCC
Q 034040           90 PHIYSNGHICLGIAS  104 (105)
Q Consensus        90 Pnv~~~G~iCl~iL~  104 (105)
                      |||+++|+||++||+
T Consensus        80 PNiy~dG~VCISILH   94 (165)
T KOG0426|consen   80 PNIYPDGRVCISILH   94 (165)
T ss_pred             CcccCCCeEEEEEee
Confidence            999999999999985

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-33  Score=188.06  Aligned_cols=88  Identities=33%  Similarity=0.702  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      +..-|+++|++|++.+..|+.+..  +.|+++|.|.|+||++|.|+||.|+..+.||.+||.+||+++|.| ++||||||
T Consensus         6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s-~mwHPNvy   84 (171)
T KOG0425|consen    6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS-KMWHPNVY   84 (171)
T ss_pred             hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh-hhcCCCcC
Confidence            567889999999999999999998  569999999999999999999999999999999999999999999 99999999


Q ss_pred             CCCceEEecCC
Q 034040           94 SNGHICLGIAS  104 (105)
Q Consensus        94 ~~G~iCl~iL~  104 (105)
                      ++|+||++||.
T Consensus        85 ~~G~vCISILH   95 (171)
T KOG0425|consen   85 EDGDVCISILH   95 (171)
T ss_pred             CCCCEEEEeec
Confidence            99999999995

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-33  Score=190.18  Aligned_cols=91  Identities=34%  Similarity=0.618  Sum_probs=85.6

Q ss_pred             ccHHHHHHHHHHHHHHhhCC---CCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040           12 LSKIASNRLQKELVEWQVNP---PAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP   87 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~---~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i   87 (105)
                      |+. +.+||++|++++.+++   ..|+.+.. ++|+.+..+.|.||+|||||||.|.++|.+|++|||+||+|+|.| +|
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~T-kI   78 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFIT-KI   78 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeee-ee
Confidence            455 8999999999999987   67888888 889999999999999999999999999999999999999999999 99


Q ss_pred             ccccccC-CCceEEecCC
Q 034040           88 LHPHIYS-NGHICLGIAS  104 (105)
Q Consensus        88 ~HPnv~~-~G~iCl~iL~  104 (105)
                      |||||++ +|.|||+||+
T Consensus        79 wHPnVSs~tGaICLDilk   96 (200)
T KOG0418|consen   79 WHPNVSSQTGAICLDILK   96 (200)
T ss_pred             ecCCCCcccccchhhhhh
Confidence            9999986 9999999985

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=7.7e-33  Score=183.83  Aligned_cols=85  Identities=46%  Similarity=0.867  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCCC
Q 034040           19 RLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG   96 (105)
Q Consensus        19 Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~G   96 (105)
                      ||++|+++++++++.|+.+.+ ++ |+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|+||||+.+|
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t-~i~HPni~~~G   79 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLT-PIFHPNIDENG   79 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESS-S-SBTTB-TTS
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccc-ccccccccccc
Confidence            899999999999999999998 64 9999999999999999999999999999999999999999999 79999999999


Q ss_pred             ceEEecCC
Q 034040           97 HICLGIAS  104 (105)
Q Consensus        97 ~iCl~iL~  104 (105)
                      +||+++|+
T Consensus        80 ~icl~~l~   87 (140)
T PF00179_consen   80 RICLDILN   87 (140)
T ss_dssp             BBGHGGGT
T ss_pred             cchhhhhh
Confidence            99999985

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.97  E-value=1.2e-31  Score=178.32  Aligned_cols=86  Identities=40%  Similarity=0.816  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCCC
Q 034040           18 NRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNG   96 (105)
Q Consensus        18 ~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~G   96 (105)
                      +||++|+++++++++.|+.+.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.| +++||||+.+|
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~-~i~HpnV~~~G   80 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT-KIYHPNVDENG   80 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC-CcccCCCCCCC
Confidence            7999999999999999999999 779999999999999999999999999999999999999999999 89999999999


Q ss_pred             ceEEecCC
Q 034040           97 HICLGIAS  104 (105)
Q Consensus        97 ~iCl~iL~  104 (105)
                      +||+++|+
T Consensus        81 ~icl~~l~   88 (141)
T cd00195          81 KICLSILK   88 (141)
T ss_pred             CCchhhcC
Confidence            99999986

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.7e-32  Score=177.98  Aligned_cols=94  Identities=32%  Similarity=0.644  Sum_probs=88.7

Q ss_pred             ccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCc
Q 034040           10 KALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPL   88 (105)
Q Consensus        10 ~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~   88 (105)
                      ........|||++|+..|+....+|+++.+ +||++.|.++|.||.+|+|+|-.|++.+.||.+||++||.|+|+|| .|
T Consensus        24 v~~~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp-c~  102 (175)
T KOG0421|consen   24 VVDGHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP-CF  102 (175)
T ss_pred             cccCchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc-cc
Confidence            333567899999999999999999999999 7899999999999999999999999999999999999999999995 99


Q ss_pred             cccccCCCceEEecCC
Q 034040           89 HPHIYSNGHICLGIAS  104 (105)
Q Consensus        89 HPnv~~~G~iCl~iL~  104 (105)
                      |||||-.|.|||+||+
T Consensus       103 HPNVD~~GnIcLDILk  118 (175)
T KOG0421|consen  103 HPNVDLSGNICLDILK  118 (175)
T ss_pred             CCCccccccchHHHHH
Confidence            9999999999999985

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.6e-31  Score=172.86  Aligned_cols=104  Identities=84%  Similarity=1.368  Sum_probs=101.5

Q ss_pred             CCCCCCCCcccccHHHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeE
Q 034040            1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV   80 (105)
Q Consensus         1 m~~s~~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v   80 (105)
                      ||||+++++..++.++.+||+||+.+++.+++.|+.....+|+.+|.+.+.|-+||.|+|-.|.+.+.||+.||++.|+|
T Consensus         1 mtss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV   80 (161)
T KOG0427|consen    1 MTSSSAPSRKALSKIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV   80 (161)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCccccccCCCceEEecCC
Q 034040           81 IFLPPAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        81 ~f~tp~i~HPnv~~~G~iCl~iL~  104 (105)
                      -|..|...||+||++|.|||+||-
T Consensus        81 mF~~~~P~HPHiYSNGHICL~iL~  104 (161)
T KOG0427|consen   81 MFVGPAPLHPHIYSNGHICLDILY  104 (161)
T ss_pred             EEecCCCCCCceecCCeEEEEeec
Confidence            999988899999999999999983

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-31  Score=175.21  Aligned_cols=92  Identities=38%  Similarity=0.784  Sum_probs=86.7

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee---c---CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV---T---DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~---~---~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      ||..+..||+.|-+.+.++.+-|+.+.+   .   .|+..|+|.|.|+.||+||||.|++++.||++||.+||+++|.+|
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p   80 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP   80 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence            4667799999999999999999999998   1   378999999999999999999999999999999999999999996


Q ss_pred             CCccccccCCCceEEecCC
Q 034040           86 APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        86 ~i~HPnv~~~G~iCl~iL~  104 (105)
                       .||||||++|.|||+||+
T Consensus        81 -l~HPNVypsgtVcLsiL~   98 (158)
T KOG0424|consen   81 -LFHPNVYPSGTVCLSILN   98 (158)
T ss_pred             -CcCCCcCCCCcEehhhhc
Confidence             999999999999999996

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.97  E-value=5.3e-30  Score=171.17  Aligned_cols=86  Identities=41%  Similarity=0.785  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCC
Q 034040           18 NRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN   95 (105)
Q Consensus        18 ~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~   95 (105)
                      +||++|+++++++++.|+.+.+ + +|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.+ .++||||+++
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~-~i~Hp~i~~~   79 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFIT-KIYHPNVDSS   79 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeC-CceEeeECCC
Confidence            5999999999999999999888 5 49999999999999999999999999999999999999999999 6999999999


Q ss_pred             CceEEecCC
Q 034040           96 GHICLGIAS  104 (105)
Q Consensus        96 G~iCl~iL~  104 (105)
                      |+||+++|.
T Consensus        80 G~icl~~l~   88 (145)
T smart00212       80 GEICLDILK   88 (145)
T ss_pred             CCEehhhcC
Confidence            999999885

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-29  Score=165.15  Aligned_cols=88  Identities=33%  Similarity=0.597  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      .+.+||+||+++|++++...+....  ++|++.|.+.|. |++.||..|.|+++|.||.+|||+||+|.|.| +||||||
T Consensus         2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~t-kiYHpNV   79 (153)
T KOG0422|consen    2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKT-KIYHPNV   79 (153)
T ss_pred             chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeee-eeccCCC
Confidence            4679999999999999887665554  679999999999 78889999999999999999999999999999 9999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      |+.|.||++||.
T Consensus        80 De~gqvClPiis   91 (153)
T KOG0422|consen   80 DEKGQVCLPIIS   91 (153)
T ss_pred             CCCCceeeeeee
Confidence            999999999985

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.5e-26  Score=158.87  Aligned_cols=90  Identities=28%  Similarity=0.521  Sum_probs=82.9

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH   91 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn   91 (105)
                      +..+.|||+|||+.|++++.+++.+.+ ++|+.+|+.+|.||+||||+||.|+.+|.||.+||++||.|+++||..   .
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG---R   79 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG---R   79 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC---c
Confidence            567899999999999999999999999 999999999999999999999999999999999999999999999732   2


Q ss_pred             ccCCCceEEecCCC
Q 034040           92 IYSNGHICLGIASF  105 (105)
Q Consensus        92 v~~~G~iCl~iL~~  105 (105)
                      +-.+-|+||+|-+|
T Consensus        80 FktntRLCLSiSDf   93 (244)
T KOG0894|consen   80 FKTNTRLCLSISDF   93 (244)
T ss_pred             eecCceEEEecccc
Confidence            44577899999876

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.2e-26  Score=155.30  Aligned_cols=84  Identities=20%  Similarity=0.647  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC-
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-   94 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~-   94 (105)
                      -|||..|+..|..   .+..+.. ++++.+++|.+.||.+|||+||+|++++.+|++||++.|+|.|.+ |||||||+. 
T Consensus         5 ~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvn-KIfHPNIDe~   80 (189)
T KOG0416|consen    5 KRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVN-KIFHPNIDEA   80 (189)
T ss_pred             ccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccccee-eccCCCchhc
Confidence            5899999988876   5667877 778999999999999999999999999999999999999999999 999999996 


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|.|||+.|+
T Consensus        81 SGsVCLDViN   90 (189)
T KOG0416|consen   81 SGSVCLDVIN   90 (189)
T ss_pred             cCccHHHHHh
Confidence            9999999875

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-26  Score=156.69  Aligned_cols=97  Identities=29%  Similarity=0.562  Sum_probs=91.9

Q ss_pred             CCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040            7 PSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus         7 ~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      .|.++.....++.+++|++++...+++|+.|.+ ++|..+.++.|.||.||||++|+|++++.+.++||.+||+-.|+| 
T Consensus         2 ~snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlT-   80 (223)
T KOG0423|consen    2 ASNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLT-   80 (223)
T ss_pred             CcccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeee-
Confidence            345677778899999999999999999999999 899999999999999999999999999999999999999999999 


Q ss_pred             CCccccccCCCceEEecCC
Q 034040           86 APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        86 ~i~HPnv~~~G~iCl~iL~  104 (105)
                      +||||||-.+|+||.+.|+
T Consensus        81 KIFHPNVaaNGEICVNtLK   99 (223)
T KOG0423|consen   81 KIFHPNVAANGEICVNTLK   99 (223)
T ss_pred             eeccCCcccCceehhhhhh
Confidence            9999999999999999875

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.3e-25  Score=150.53  Aligned_cols=93  Identities=27%  Similarity=0.527  Sum_probs=76.9

Q ss_pred             CcccccHHHHHHHHHHHHHHhhCCCCCeEEee---cCCcc--ceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040            8 SRKALSKIASNRLQKELVEWQVNPPAGFKHKV---TDNLQ--RWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus         8 ~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~---~~~~~--~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f   82 (105)
                      +.....+.++-||++|+.++.-  +++++...   .++..  +++++|. |+++.|+||.|+|++.+|+.||++||+|.+
T Consensus        21 ~~~~~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkC   97 (184)
T KOG0420|consen   21 STRKKVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKC   97 (184)
T ss_pred             cccccccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeee
Confidence            4445556778888888887754  55655432   33443  5999998 888899999999999999999999999999


Q ss_pred             ecCCCccccccCCCceEEecCC
Q 034040           83 LPPAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        83 ~tp~i~HPnv~~~G~iCl~iL~  104 (105)
                      +| +|||||||.+|.|||+||+
T Consensus        98 lt-kV~HPNId~~GnVCLnILR  118 (184)
T KOG0420|consen   98 LT-KVYHPNIDLDGNVCLNILR  118 (184)
T ss_pred             ee-ccccCCcCCcchHHHHHHH
Confidence            99 9999999999999999985

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=8e-22  Score=140.16  Aligned_cols=91  Identities=31%  Similarity=0.626  Sum_probs=80.5

Q ss_pred             cccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      +..+.+.|||+||.++|+ ++-+.+.+.+ ++|+++|+++|.||.||-||||+|+.+|.||.+||++||.+-.+||+.  
T Consensus         7 N~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG--   83 (314)
T KOG0428|consen    7 NLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG--   83 (314)
T ss_pred             cccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC--
Confidence            345688999999999998 7777888888 999999999999999999999999999999999999999999999732  


Q ss_pred             ccccCCCceEEecCCC
Q 034040           90 PHIYSNGHICLGIASF  105 (105)
Q Consensus        90 Pnv~~~G~iCl~iL~~  105 (105)
                       .+.-+-+|||+|-+|
T Consensus        84 -RFE~nkKiCLSISgy   98 (314)
T KOG0428|consen   84 -RFEVNKKICLSISGY   98 (314)
T ss_pred             -ceeeCceEEEEecCC
Confidence             244577899999876

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1e-16  Score=131.14  Aligned_cols=90  Identities=26%  Similarity=0.531  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC-CCccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP-APLHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp-~i~HPnv   92 (105)
                      ...+..+.|.+-|..+.+.|+.|.. ++.+....+.|.|++||||.+|+|.|.+.||++||..||.|...+- -.++||.
T Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl  930 (1101)
T KOG0895|consen  851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL  930 (1101)
T ss_pred             HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence            4455556677777788999999999 9999999999999999999999999999999999999999999984 3479999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      |.+|+|||+||+
T Consensus       931 y~~g~vc~s~l~  942 (1101)
T KOG0895|consen  931 YEDGKVCLSLLN  942 (1101)
T ss_pred             ccccceehhhhc
Confidence            999999999996

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.1e-15  Score=125.32  Aligned_cols=95  Identities=29%  Similarity=0.543  Sum_probs=87.4

Q ss_pred             ccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC--C
Q 034040           10 KALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP--A   86 (105)
Q Consensus        10 ~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp--~   86 (105)
                      ..-+....+|+++|++-+.++.+.|+.+.+ +.++....++|.||.|+||++|+|.|.|.||..||..||.|.++|.  .
T Consensus       277 k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~  356 (1101)
T KOG0895|consen  277 KPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV  356 (1101)
T ss_pred             CccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence            334567789999999999999999999998 8999999999999999999999999999999999999999999983  2


Q ss_pred             CccccccCCCceEEecCC
Q 034040           87 PLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        87 i~HPnv~~~G~iCl~iL~  104 (105)
                      .+.||.|.+|+||+++|.
T Consensus       357 R~nPNlYn~GKVcLslLg  374 (1101)
T KOG0895|consen  357 RLNPNLYNDGKVCLSLLG  374 (1101)
T ss_pred             eecCCcccCceEEeeeee
Confidence            679999999999999983

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=4.3e-14  Score=99.40  Aligned_cols=87  Identities=22%  Similarity=0.347  Sum_probs=77.7

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCC--CCCeEEEecCCCcc
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM--EAPQVIFLPPAPLH   89 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~--~pP~v~f~tp~i~H   89 (105)
                      .....--|..|+....+.+-+|+++.+ -.|-+.|.++|++..| .|.||+|+|.|.+|++||.  .-|+|.|.+ .++|
T Consensus        17 ~i~qey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q-~vfH   94 (258)
T KOG0429|consen   17 NILQEYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQ-SVFH   94 (258)
T ss_pred             HHHHHHHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeec-cccc
Confidence            344556788899999999999999999 6888999999999887 9999999999999999994  579999999 6999


Q ss_pred             ccccC-CCceEEe
Q 034040           90 PHIYS-NGHICLG  101 (105)
Q Consensus        90 Pnv~~-~G~iCl~  101 (105)
                      |+|.+ ++.+|++
T Consensus        95 P~icp~skeLdl~  107 (258)
T KOG0429|consen   95 PLICPKSKELDLN  107 (258)
T ss_pred             cccCCCccceeHh
Confidence            99997 8999985

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4e-12  Score=83.28  Aligned_cols=83  Identities=29%  Similarity=0.392  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee---cCC--ccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV---TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~---~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      .+.-||.+|+.+=++...+|.....   .+|  +..|...|.||+.|+||+.+|.++|..-++||..||.|+|.| ++--
T Consensus         5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~t-kinm   83 (138)
T KOG0896|consen    5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGT-KINM   83 (138)
T ss_pred             ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEE-Eeee
Confidence            3566899999888887666655544   233  468999999999999999999999999999999999999999 9988


Q ss_pred             ccccC-CCce
Q 034040           90 PHIYS-NGHI   98 (105)
Q Consensus        90 Pnv~~-~G~i   98 (105)
                      +.|.. +|.|
T Consensus        84 ~gvn~~~g~V   93 (138)
T KOG0896|consen   84 NGVNSSNGVV   93 (138)
T ss_pred             cccccCCCcc
Confidence            88875 6554

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=98.35  E-value=3e-07  Score=61.20  Aligned_cols=83  Identities=24%  Similarity=0.431  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEE
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f   82 (105)
                      ..-..||..||+.|-+-      +.. +++-.+|.-.-.-++||-|.|.          .|.+++.+|..||..||.|..
T Consensus        23 ~~W~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l   96 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL   96 (161)
T ss_dssp             HHHHHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred             HHHHHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence            56789999999998551      111 1111233322233555555552          345666779999999999988


Q ss_pred             ecCCCccccccCCCceEEec
Q 034040           83 LPPAPLHPHIYSNGHICLGI  102 (105)
Q Consensus        83 ~tp~i~HPnv~~~G~iCl~i  102 (105)
                      ..-.--..-.|..|+|||++
T Consensus        97 PeLdGKTaKMYRGGkIClt~  116 (161)
T PF08694_consen   97 PELDGKTAKMYRGGKICLTD  116 (161)
T ss_dssp             GGGTTT-SSBCCCCBB---T
T ss_pred             cccCCchhhhhcCceEeeec
Confidence            74223344567899999975

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.08  E-value=7.3e-06  Score=54.03  Aligned_cols=42  Identities=36%  Similarity=0.810  Sum_probs=38.1

Q ss_pred             CCCEEEEEEECCCCCCCCCCeEEEecCCC--ccccccCCCceEE
Q 034040           59 ANETFELQVDFPEHYPMEAPQVIFLPPAP--LHPHIYSNGHICL  100 (105)
Q Consensus        59 ~gg~f~~~i~fp~~yP~~pP~v~f~tp~i--~HPnv~~~G~iCl  100 (105)
                      .|+.+.+.|.||++||..||.|....+.-  +=|||+.+|.+|+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl   77 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCL   77 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEE
Confidence            68999999999999999999999987532  7899999999999

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.64  E-value=9.8e-05  Score=48.10  Aligned_cols=59  Identities=29%  Similarity=0.559  Sum_probs=37.7

Q ss_pred             cceEEEEEcCCCCCCCCCEEE--EEEECCCCCCCCCCeEEEecC-----CCccccccCCCceEEecC
Q 034040           44 QRWIIEVNGAPGTLYANETFE--LQVDFPEHYPMEAPQVIFLPP-----APLHPHIYSNGHICLGIA  103 (105)
Q Consensus        44 ~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~tp-----~i~HPnv~~~G~iCl~iL  103 (105)
                      .+--+.+.|--.=.|+|..|.  +.|.+|.+||.+||.+.....     +.-| +||++|+|.++.|
T Consensus        29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~-~Vd~~G~v~~pyL   94 (121)
T PF05743_consen   29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSH-HVDSNGRVYLPYL   94 (121)
T ss_dssp             EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCC-CB-TTSBB-SHHH
T ss_pred             hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCC-eECCCCCEeCchh
Confidence            333444444111268898886  566789999999999977642     2234 9999999988765

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=2.1e-05  Score=50.61  Aligned_cols=42  Identities=19%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             EEEEEECCCCCCCCCCeEEEecCCCccccccCCCceEEecCC
Q 034040           63 FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        63 f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~G~iCl~iL~  104 (105)
                      ..+.+.|+++||+.||.+|...|.+-.--|-.+|+||+.||.
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt   54 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT   54 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc
Confidence            456678999999999999888876555556679999999874

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.00014  Score=47.97  Aligned_cols=84  Identities=23%  Similarity=0.454  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCE----------EEEEEECCCCCCCCCCeEEE
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANET----------FELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~----------f~~~i~fp~~yP~~pP~v~f   82 (105)
                      ...-..||..|++.|-..    +... +++-..|.-.-.-++||-|-|.+          |.+++.+|-.||-.+|.+..
T Consensus        25 ~~~wvqrlkeey~sli~y----vqnn-k~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial   99 (167)
T KOG3357|consen   25 GDLWVQRLKEEYQSLIAY----VQNN-KSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL   99 (167)
T ss_pred             chHHHHHHHHHHHHHHHH----HHhC-cccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence            345678999999998551    1111 23334454444557788887743          45566679999999999877


Q ss_pred             ecCCCccccccCCCceEEe
Q 034040           83 LPPAPLHPHIYSNGHICLG  101 (105)
Q Consensus        83 ~tp~i~HPnv~~~G~iCl~  101 (105)
                      .--..-.-..|..|+|||.
T Consensus       100 peldgktakmyrggkiclt  118 (167)
T KOG3357|consen  100 PELDGKTAKMYRGGKICLT  118 (167)
T ss_pred             cccCchhhhhhcCceEeec
Confidence            6321222345789999986

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.0056  Score=46.21  Aligned_cols=59  Identities=20%  Similarity=0.319  Sum_probs=43.4

Q ss_pred             CccceEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecC----CCccccccCCCceEEecCC
Q 034040           42 NLQRWIIEVNGAPGTLYANETFEL--QVDFPEHYPMEAPQVIFLPP----APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        42 ~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~yP~~pP~v~f~tp----~i~HPnv~~~G~iCl~iL~  104 (105)
                      +.+...++|.    .+|.|..|.+  .|.+.+.||..||.+.....    .-.|-+|+++|+|.|+.|+
T Consensus        51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh  115 (365)
T KOG2391|consen   51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH  115 (365)
T ss_pred             chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc
Confidence            3444444444    3788988875  55679999999999965532    1238999999999999885

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.82  E-value=0.0035  Score=39.05  Aligned_cols=68  Identities=15%  Similarity=0.296  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEc--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNG--APGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      ..+...|+..|+.--+... ... ..+...+.+.+..  ...+.-..-.+.+.+.||++||..+|.|.+.++
T Consensus         3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~   73 (113)
T PF05773_consen    3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP   73 (113)
T ss_dssp             HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence            3567788888877544443 112 3344556666621  233344556899999999999999999998874

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=96.47  E-value=0.025  Score=34.85  Aligned_cols=26  Identities=42%  Similarity=0.740  Sum_probs=22.5

Q ss_pred             CCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           60 NETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        60 gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      .-.+.+.+.||++||..+|.|.+.++
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC
Confidence            34588999999999999999998873

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=92.84  E-value=1.1  Score=29.39  Aligned_cols=52  Identities=23%  Similarity=0.622  Sum_probs=38.2

Q ss_pred             CCeEEee-cCCccceEEEEEc--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           33 AGFKHKV-TDNLQRWIIEVNG--APGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        33 ~~~~~~~-~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      .|+.... .+.-..|.+ |.+  -+.+.|.+..=.+.|.+|+.||..+|-+-+..|
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P   66 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP   66 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence            4555555 444456666 666  334479999999999999999999988777765

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=91.64  E-value=0.81  Score=32.64  Aligned_cols=69  Identities=23%  Similarity=0.326  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCC--CCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           20 LQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPG--TLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        20 l~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~--tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      ...|+..|...-+.-+....+.+...+.+.|.--.+  .-+.| .+.+.+.++++||..+|-+.+..++-++
T Consensus         7 Qe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~~~~~~~   77 (215)
T KOG4018|consen    7 QEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAFENENLE   77 (215)
T ss_pred             HHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecccccccc
Confidence            455666666544333312223333346666663222  12223 7889999999999999999665544443

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=84.75  E-value=4.3  Score=30.25  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      ....++|.+|+.++..+.  .+.+..+++....++.+..  .    .....++|.++.+||.++|.+...-|
T Consensus        98 ~~~ys~ll~EIe~IGW~k--l~~i~~d~~ls~i~l~~~D--~----~R~H~l~l~l~~~yp~~~p~~~~~~P  161 (291)
T PF09765_consen   98 PQYYSNLLKEIEAIGWDK--LVQIQFDDDLSTIKLKIFD--S----SRQHYLELKLPSNYPFEPPSCSLDLP  161 (291)
T ss_dssp             -GGC-CHHHHHHHHHCGC--CEEEEE-CCCSEEEEEEET--T----CEEEEEEEETTTTTTTSEEEECS-TT
T ss_pred             cHHHHHHHHHHHHhcccc--ceEEecCCCccEEEEEEEc--C----CceEEEEEEECCCCCCCCceeeCCCC
Confidence            445678889999886633  3344447888888888872  1    26789999999999999998655544

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.26  E-value=7.1  Score=33.15  Aligned_cols=67  Identities=21%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEE-EEEEECCCCCCCC-CCeEEEecC
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETF-ELQVDFPEHYPME-APQVIFLPP   85 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f-~~~i~fp~~yP~~-pP~v~f~tp   85 (105)
                      ..-|.+|+.-|-. +..++.+.. +-.-..-.+.+.+|-. +-+|-+| ++.|.||.+||.+ +|++.|.-|
T Consensus       422 pQnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  422 PQNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence            3456667766633 233443432 2222445556666544 3344444 7888999999974 799999864

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=80.08  E-value=1.9  Score=29.46  Aligned_cols=37  Identities=30%  Similarity=0.538  Sum_probs=26.6

Q ss_pred             EEEEECCCCCCCCCCeEEEecCCCc---cccccCC-----CceEEe
Q 034040           64 ELQVDFPEHYPMEAPQVIFLPPAPL---HPHIYSN-----GHICLG  101 (105)
Q Consensus        64 ~~~i~fp~~yP~~pP~v~f~tp~i~---HPnv~~~-----G~iCl~  101 (105)
                      .+.|.|+.+||..+|.|.++- +-|   +|++...     ..+||-
T Consensus        56 ~~~i~~~~~~~~~~P~v~~lR-~dFP~~lpH~~~~~~~~p~~lCl~  100 (162)
T PF14457_consen   56 RVAIVFPPDSPLSAPEVPALR-KDFPGNLPHQNPGPEGEPVSLCLY  100 (162)
T ss_pred             eEEEEecCCCCCCCccchhhH-hhCCCCCCccCCCCCCCCccceEe
Confidence            467899999999999776664 222   4777654     568985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		5e-20
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		5e-16
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		8e-16
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		5e-12
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		2e-11
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-11
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		7e-11
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-11
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		8e-11
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		8e-11
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		1e-10
1jas_A	152	Hsubc2b Length = 152		1e-10
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		1e-10
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		2e-10
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		6e-10
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		8e-10
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		1e-09
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		1e-09
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-09
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		1e-09
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-09
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-09
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-09
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		2e-09
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		2e-09
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		3e-09
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-09
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		3e-09
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		3e-09
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		3e-09
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		3e-09
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		5e-09
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-08
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-08
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-08
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-08
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-08
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-08
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-08
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		2e-08
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		3e-08
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		3e-08
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		5e-08
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		5e-08
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		6e-08
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		6e-08
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		8e-08
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		9e-08
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		9e-08
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		9e-08
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		9e-08
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-07
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		1e-07
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-07
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-07
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		2e-07
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		3e-07
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		4e-07
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		4e-07
3jvz_A	146	E2~ubiquitin-Hect Length = 146		4e-07
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		6e-07
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		1e-06
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		1e-06
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-06
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-06
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		3e-06
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-06
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		4e-06
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		6e-06
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		6e-06
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		1e-05
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-05
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-05
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-05
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		2e-05
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		2e-05
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		3e-05
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		3e-05
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		4e-05
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-05
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		4e-05
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		4e-05
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		5e-05
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		5e-05
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		5e-05
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		6e-05
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		7e-05
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		9e-05
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		1e-04
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		1e-04
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		1e-04
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		2e-04
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		2e-04
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		6e-04

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 19  RLQKELVEWQVNPPAGF---KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           RLQKEL+  Q +PP G    +  V +++ +WI+++ GAPGTLY  E F+L   F   YP 
Sbjct: 26  RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 85
Query: 76  EAPQVIFLPP-APLHPHIYSNGHICLGIAS 104
           ++PQV+F     P+HPH+YSNGHICL I +
Sbjct: 86  DSPQVMFTGENIPVHPHVYSNGHICLSILT 115

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           A+ R+QKEL  +  NPP      V   N++ WI++  G   T+YANE +++++ FP++YP
Sbjct: 21  ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ P V FL   P H H+YSNG ICL +
Sbjct: 81  LKPPIVYFLQKPPKHTHVYSNGDICLSV 108

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           A+ R+QKEL  +  NPP      V  +N++ WI++  G   T+YANE ++L++ FP+ YP
Sbjct: 7   ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ P V FL   P H H+YSNG ICL +
Sbjct: 67  LKPPIVYFLQKPPKHTHVYSNGDICLSL 94

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKH--KVTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
           +SK A  RL KEL +   + P G     K  +N+  W   + G P T YA+  F  +++F
Sbjct: 1   MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P+ YP+  P++ F  P+ LHP+IY NG +C+ I
Sbjct: 61  PKDYPLSPPKLTFT-PSILHPNIYPNGEVCISI 92

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 7   PSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           PS  A       RLQ+EL+   ++   G      +DNL +W+  ++GA GT+Y +  ++L
Sbjct: 22  PSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKL 81
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            ++FP  YP  AP V FL P   HP++ + G+I L I
Sbjct: 82  SLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNISLDI 117

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTD------NLQRWIIEVNGAPGTLYANETFELQ 66
           S +   RLQ+E  +W+ + P GF  K         +L  W + + G P T +    ++L 
Sbjct: 8   SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 67  VDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           + FPE YP   P+  F PP   HP++Y +G +CL I
Sbjct: 68  MAFPEEYPTRPPKCRFTPPL-FHPNVYPSGTVCLSI 102

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 11  ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
           ++S +   RLQ+E  +W+ + P GF      K   + +LQ+W   + G  GT +A   + 
Sbjct: 2   SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 65  LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           + V++P  YP + P+V F P    HP++Y +G ICL I
Sbjct: 62  ITVEYPNEYPSKPPKVKF-PAGFYHPNVYPSGTICLSI 98

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+QKEL + Q +PPA      V D+L  W   + G P + Y    F L V FP  Y
Sbjct: 19  MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P++ F      HP+I SNG ICL I
Sbjct: 79  PFKPPKIAFTTKI-YHPNINSNGSICLDI 106

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 14  KIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72
           ++A  R+QKEL + Q +PPA      V D+L  W   + G P + Y    F L V FP  
Sbjct: 6   EMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD 65
Query: 73  YPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           YP + P++ F      HP+I SNG ICL I
Sbjct: 66  YPFKPPKIAFTTKI-YHPNINSNGSICLDI 94

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+QKEL + Q +PPA      V D+L  W   + G P + Y    F L V FP  Y
Sbjct: 3   MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P++ F      HP+I SNG ICL I
Sbjct: 63  PFKPPKIAFTTKI-YHPNINSNGSICLDI 90

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S +   RLQ+E  +W+ + P GF      K   + +LQ+W   + G  GT +A   + +
Sbjct: 1   MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            V++P  YP + P+V F P    HP++Y +G ICL I
Sbjct: 61  TVEYPNEYPSKPPKVKF-PAGFYHPNVYPSGTICLSI 96

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
           +S  A  RL ++    Q +PP G     ++N + +W   + G  GT + + TF+L ++F 
Sbjct: 1   MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           E YP + P V FL     HP++Y++G ICL I
Sbjct: 61  EEYPNKPPTVRFLSKM-FHPNVYADGSICLDI 91

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 13  SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           + +A  R+QKEL E Q +PP       V D++  W   + G   + Y    F L V FP 
Sbjct: 2   AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPV 61
Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            YP +AP+V F+     HP+I  NG ICL I
Sbjct: 62  DYPFKAPRVTFMTKV-YHPNINKNGVICLDI 91

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 11  ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
           A+  +A  R+QKEL + Q +PPA      V D+L  W   + G   + Y    F L + F
Sbjct: 2   AMGSMALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHF 61
Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P  YP + P+V F      HP+I SNG ICL I
Sbjct: 62  PTDYPFKPPKVAFTTKI-YHPNINSNGSICLDI 93

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 20  LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           L+++L E   NP  GF   + D+  L RW + + G P TLY    F+  + FP+ YP+  
Sbjct: 22  LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P++ F+     HP++  NG +C+ I
Sbjct: 82  PKMKFITEI-WHPNVDKNGDVCISI 105

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 5   SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
           + PSR+        RL ++  + Q +PPAG     T DN+  W   + G   T + + TF
Sbjct: 2   TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 53
Query: 64  ELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           +L ++F E YP + P V F+     HP++Y++G ICL I
Sbjct: 54  KLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDI 91

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 5   SAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETF 63
           + PSR+        RL ++  + Q +PPAG     T DN+  W   + G   T + + TF
Sbjct: 5   TTPSRR--------RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTF 56
Query: 64  ELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           +L ++F E YP + P V F+     HP++Y++G ICL I
Sbjct: 57  KLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDI 94

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+QKEL + Q +PPA  +   V D+L  W   + G P + Y    F L V FP  Y
Sbjct: 7   MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P++ F      HP+I SNG I L I
Sbjct: 67  PFKPPKIAFTTKI-YHPNINSNGSIKLDI 94

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 13  SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           S +A  R+QKEL +   +PPA      V D+L  W   + G P + Y    F L + FP 
Sbjct: 2   SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61
Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            YP + P+V F      HP+I SNG ICL I
Sbjct: 62  DYPFKPPKVAFTTRI-YHPNINSNGSICLDI 91

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHKVTDN-LQRWIIEVNGAPGTLYANETFELQVDFP 70
           +S  A  RL ++    Q +PPAG      DN +  W   + G   T +   TF+L + F 
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           E YP + P V F+     HP+IY++G ICL I
Sbjct: 61  EDYPNKPPTVRFVSRM-FHPNIYADGSICLDI 91

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 11  ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
           ++S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+
Sbjct: 5   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 65  LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           L++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 65  LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 101

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 11  ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
           ++S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+
Sbjct: 2   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 65  LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           L++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 62  LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 98

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 11  ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
           ++S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+
Sbjct: 1   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 65  LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           L++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 61  LRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 97

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 99

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
           +S  A  RL ++    + + P G     + DN+  W   + G   T Y + TF L ++F 
Sbjct: 1   MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           E YP + P V FL     HP++Y+NG ICL I
Sbjct: 61  EEYPNKPPHVKFLSEM-FHPNVYANGEICLDI 91

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 99

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP +Y +G +CL I
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPL-FHPQVYPSGTVCLSI 99

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 96

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 99

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 3   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 63  RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSI 98

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           +S R+ KEL + + +PP       V D+L  W   + G   + YA   F L + FP  YP
Sbjct: 3   SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P++ F      HP+I +NG+ICL I
Sbjct: 63  FKPPKISFTTKI-YHPNINANGNICLDI 89

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 17  SNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           ++RL++EL      PP G    +  D +     ++ G   T Y    F+L+V  PE YP 
Sbjct: 6   ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 76  EAPQVIFLPPAPLHPHIYSNGHICLGIASF 105
           E PQ+ FL P   HP+I S G ICL +   
Sbjct: 66  EPPQIRFLTPI-YHPNIDSAGRICLDVLKL 94

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 19  RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           R+ KE       PP G     V +N + + I +NG  GT Y   T++L++  PE YPME 
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P+V FL     HP+I   G ICL I
Sbjct: 65  PKVRFLTKI-YHPNIDKLGRICLDI 88

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 19  RLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           R+ KE       PP G     V +N + + I +NG  GT Y   T++L++  PE YPME 
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P+V FL     HP+I   G ICL I
Sbjct: 65  PKVRFLTKI-YHPNIDKLGRICLDI 88

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 16  ASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           ++ R+QKEL E  ++PP    AG K    DN+  W   + G PG++Y    F L + F  
Sbjct: 4   SAKRIQKELAEITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDITFSP 60
Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            YP + P+V F      H +I S G ICL I
Sbjct: 61  DYPFKPPKVTFRTRI-YHCNINSQGVICLDI 90

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 17  SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
           S RLQ+EL    ++   G       DNL +W+  ++G   T+Y +  ++L ++FP  YP 
Sbjct: 11  SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 76  EAPQVIFLPPAPLHPHIYSNGHICLGI 102
           + P V F  P   HP++  +G+ICL I
Sbjct: 71  KPPVVKFTTPC-WHPNVDQSGNICLDI 96

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 11  ALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
           A+  +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + F
Sbjct: 2   AMGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 61
Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P  YP + P+V F      HP+I SNG ICL I
Sbjct: 62  PTDYPFKPPKVAFTTRI-YHPNINSNGSICLDI 93

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ +EL +   +PP+      V D+L  W   + G   + YA   F L + FP  Y
Sbjct: 1   MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 61  PFKPPKVNFTTRI-YHPNINSNGSICLDI 88

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 12  LSKIASNRLQKELVEWQVNPP----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQV 67
           L   ++ R+QKEL +  ++PP    AG K    DN+  W   + G PG++Y    F L +
Sbjct: 45  LLSTSAKRIQKELADITLDPPPNCSAGPKG---DNIYEWRSTILGPPGSVYEGGVFFLDI 101
Query: 68  DFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            F   YP + P+V F      H +I S G ICL I
Sbjct: 102 TFTPEYPFKPPKVTFRTRI-YHCNINSQGVICLDI 135

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++  +G +CL I
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPL-FHPNVAPSGTVCLSI 99

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
           ++ +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP
Sbjct: 8   MNSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             YP + P+V F      HP+I SNG ICL I
Sbjct: 68  TDYPFKPPKVAFTTRI-YHPNINSNGSICLDI 98

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 20  LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           L+K+L + +  P  GF   + D+  + +W + V G P TLY    F+  +DFP  YP + 
Sbjct: 8   LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P++ F+     HP+I   G++C+ I
Sbjct: 68  PKMKFISEI-WHPNIDKEGNVCISI 91

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++Y +G + L I
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVSLSI 96

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
           ++ +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP
Sbjct: 8   MNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 67
Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             YP + P+V F      HP+I SNG ICL I
Sbjct: 68  TDYPFKPPKVAFTTRI-YHPNINSNGSICLDI 98

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 9   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 69  PFKPPKVAFTTRI-YHPNINSNGSICLDI 96

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
           +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ F + YP   P+  F PP   HP++Y +G + L I
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVXLSI 96

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP
Sbjct: 4   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P+V F      HP+I SNG ICL I
Sbjct: 64  FKPPKVAFTTRI-YHPNINSNGSICLDI 90

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP
Sbjct: 1   ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P+V F      HP+I SNG ICL I
Sbjct: 61  FKPPKVAFTTRI-YHPNINSNGSICLDI 87

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 19  MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 79  PFKPPKVAFTTRI-YHPNINSNGSICLDI 106

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 3   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 63  PFKPPKVAFTTRI-YHPNINSNGSICLDI 90

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 3   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 63  PFKPPKVAFTTRI-YHPNINSNGSICLDI 90

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 3   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 63  PFKPPKVAFTTRI-YHPNINSNGSICLDI 90

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 1   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 61  PFKPPKVAFTTRI-YHPNINSNGSICLDI 88

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W     G   + Y    F L + FP  Y
Sbjct: 3   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 63  PFKPPKVAFTTRI-YHPNINSNGSICLDI 90

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 41  DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
           DNL+ + + + G   + Y +  FEL++  P+ YPMEAP+V FL     HP+I   G ICL
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRICL 88
Query: 101 GI 102
            +
Sbjct: 89  DV 90

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 41  DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
           DNL+ + + + G   + Y +  FEL++  P+ YPMEAP+V FL     HP+I   G ICL
Sbjct: 32  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRICL 90
Query: 101 GI 102
            +
Sbjct: 91  DV 92

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 3   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICL 100
           P + P+V F      HP+I SNG ICL
Sbjct: 63  PFKPPKVAFTTRI-YHPNINSNGSICL 88

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 23  ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
           EL   Q  P  GF+  + D  +L  W + + G P T Y    F+ ++ FP  YP   P  
Sbjct: 15  ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAF 74
Query: 81  IFLPPAPLHPHIYSNGHICLGI 102
            FL     HP+IY  G +C+ I
Sbjct: 75  RFLTKM-WHPNIYETGDVCISI 95

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 23  ELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
           EL   Q  P  GF+  + D  +L  W + + G P T Y    F+ ++ FP  YP   P  
Sbjct: 12  ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAF 71
Query: 81  IFLPPAPLHPHIYSNGHICLGI 102
            FL     HP+IY  G +C+ I
Sbjct: 72  RFLTKM-WHPNIYETGDVCISI 92

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           AS R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP
Sbjct: 1   ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P+V F      HP+I SNG I L I
Sbjct: 61  FKPPKVAFTTRI-YHPNINSNGSISLDI 87

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           A  R+ KEL +   +PP       V D++  W   + G   + Y+   F L + FP  YP
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P+V F      HP+I S G ICL I
Sbjct: 82  FKPPKVNFTTKI-YHPNINSQGAICLDI 108

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 1   MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG I L I
Sbjct: 61  PFKPPKVAFTTRI-YHPNINSNGSISLDI 88

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 4   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG I L I
Sbjct: 64  PFKPPKVAFTTRI-YHPNINSNGSISLDI 91

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA  +   V D++  W   + G   + Y    F L + FP  Y
Sbjct: 1   MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP I SNG I L I
Sbjct: 61  PFKPPKVAFTTRI-YHPAINSNGSISLDI 88

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 19  MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG I L I
Sbjct: 79  PFKPPKVAFTTRI-YHPNINSNGSIXLDI 106

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 3   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG I L I
Sbjct: 63  PFKPPKVAFTTRI-YHPNINSNGSISLDI 90

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 41  DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
           DNL+ + + + G   + Y +  FEL++  P+ YPMEAP+V FL     HP+I   G I L
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRISL 88
Query: 101 GI 102
            +
Sbjct: 89  DV 90

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 1   MTSSSAPSRKALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGT 56
           MT      R +++ IA  R++   KE+++ +       K  + D N      E+ G P T
Sbjct: 7   MTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT 66
Query: 57  LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
            Y    ++L++  PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 67  PYEGGRYQLEIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 112

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPE 71
           S +AS R+ KEL + Q  PP   ++  +D+    +      P    Y  + F L++ FP 
Sbjct: 2   SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPP 61
Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
            YP + P + F      HP++  NG ICL I S
Sbjct: 62  EYPFKPPMIKFTTKI-YHPNVDENGQICLPIIS 93

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 41  DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
           DNL+ + + + G   + Y +  FEL++  P+ YPMEAP+V FL     HP I   G I L
Sbjct: 30  DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPAIDRLGRISL 88
Query: 101 GI 102
            +
Sbjct: 89  DV 90

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 15  IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTL-YANETFELQVDFPEHY 73
           +AS R+ KEL + Q  PP   ++  +D+    +      P    Y  + F L++ FP  Y
Sbjct: 1   MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
           P + P + F      HP++  NG ICL I S
Sbjct: 61  PFKPPMIKFTTKI-YHPNVDENGQICLPIIS 90

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18  NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM 
Sbjct: 11  RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 77  APQVIFLPPAPLHPHIYSNGHICLGI 102
           AP+V F+     HP++   G ICL I
Sbjct: 71  APKVRFMTKI-YHPNVDKLGRICLDI 95

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18  NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM 
Sbjct: 8   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 77  APQVIFLPPAPLHPHIYSNGHICLGI 102
           AP+V F+     HP++   G ICL I
Sbjct: 68  APKVRFMTKI-YHPNVDKLGRICLDI 92

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18  NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM 
Sbjct: 4   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 77  APQVIFLPPAPLHPHIYSNGHICLGI 102
           AP+V F+     HP++   G ICL I
Sbjct: 64  APKVRFMTKI-YHPNVDKLGRICLDI 88

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18  NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM 
Sbjct: 6   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 77  APQVIFLPPAPLHPHIYSNGHICLGI 102
           AP+V F+     HP++   G ICL I
Sbjct: 66  APKVRFMTKI-YHPNVDKLGRICLDI 90

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18  NRLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPME 76
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM 
Sbjct: 9   RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 77  APQVIFLPPAPLHPHIYSNGHICLGI 102
           AP+V F+     HP++   G ICL I
Sbjct: 69  APKVRFMTKI-YHPNVDKLGRICLDI 93

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVD 68
           S  AS RL KEL E +      F++   D  NL  W  +I  +  P   Y    F ++++
Sbjct: 2   SMAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEIN 58
Query: 69  FPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
           FP  YP + P++ F      HP+I   G +CL + S
Sbjct: 59  FPAEYPFKPPKITFKTKI-YHPNIDEKGQVCLPVIS 93

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 42  NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
           +L +W   ++G   T Y N  F + ++ P  YPM  P++ F+    LH ++ S  G ICL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 101 GI 102
            I
Sbjct: 106 NI 107

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRW--IIEVNGAPGTLYANETFELQVDFPE 71
           AS RL KEL E +      F++   D  NL  W  +I  +  P   Y    F ++++FP 
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEINFPA 59
Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
            YP + P++ F      HP+I   G +CL + S
Sbjct: 60  EYPFKPPKITFKTKI-YHPNIDEKGQVCLPVIS 91

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
           ++  A  RL  E  +  +NPP G        +N   W   + G   T +    F   + F
Sbjct: 6   MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 65
Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P  YP+  P++ F      HP+IY +G +C+ I
Sbjct: 66  PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISI 97

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
           ++  A  RL  E  +  +NPP G        +N   W   + G   T +    F   + F
Sbjct: 4   MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 63
Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P  YP+  P++ F      HP+IY +G +C+ I
Sbjct: 64  PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISI 95

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDF 69
           ++  A  RL  E  +  +NPP G        +N   W   + G   T +    F   + F
Sbjct: 3   MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSF 62
Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P  YP+  P++ F      HP+IY +G +C+ I
Sbjct: 63  PLDYPLSPPKMRFTCEM-FHPNIYPDGRVCISI 94

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 42  NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
           +L +W   ++G   T Y N  F + ++ P  YPM  P++ F+    LH ++ S  G ICL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 101 GI 102
            I
Sbjct: 106 NI 107

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 42  NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICL 100
           +L +W   ++G   T Y N  F + ++ P  YPM  P++ F+    LH ++ S  G ICL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 101 GI 102
            I
Sbjct: 106 NI 107

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 11  ALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQ 66
           A++ IA  R++   KE+++ +       K  + D N      E+ G P T Y    ++L+
Sbjct: 4   AMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 63
Query: 67  VDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
           +  PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 64  IKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 99

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 16  ASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           A  RL  E  +  +NPP G        +N   W   + G   T +    F   + FP  Y
Sbjct: 4   ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P+  P++ F      HP+IY +G +C+ I
Sbjct: 64  PLSPPKMRFTCEM-FHPNIYPDGRVCISI 91

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 36  KHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI- 92
           KH+VT    L  ++++  G  GT Y    ++++VD P+ YP ++P + F+     HP+I 
Sbjct: 41  KHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKI-FHPNID 99
Query: 93  YSNGHICLGI 102
            ++G +CL +
Sbjct: 100 EASGTVCLDV 109

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 12  LSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQV 67
           ++ IA  R++   KE+++ +       K  + D N      E+ G P T Y    ++L++
Sbjct: 54  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 68  DFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
             PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 114 KIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 148

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 11  ALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQ 66
           +++ IA  R++   KE+++ +       K  + D N      E+ G P T Y    ++L+
Sbjct: 2   SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 67  VDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
           +  PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 62  IKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 97

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 11  ALSKIASNRLQ---KELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQ 66
            ++ IA  R++   KE+++ +       K  + D N      E+ G P T Y    ++L+
Sbjct: 1   GMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 60
Query: 67  VDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
           +  PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 61  IKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 96

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 40  TDNLQRWIIEVNGAPGTLY--ANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGH 97
           TD +  WI++V     ++Y  A  T++L V F + YP E P V F+ P    P +   G 
Sbjct: 46  TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPV-YSPLVTGEGG 104
Query: 98  IC 99
           IC
Sbjct: 105 IC 106

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 22  KELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQV 80
           KE+     +PP G K     ++L    + + G  GT YA   F +++   + +P   P+ 
Sbjct: 20  KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 79
Query: 81  IFLPPAPLHPHIYSNGHICLGI 102
            FL     HP++ +NG IC+ +
Sbjct: 80  YFLTKI-FHPNVGANGEICVNV 100

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 19  RLQKELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           RLQKEL + +          + D N   W+  + G  GT Y    F L +  P  YP   
Sbjct: 27  RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 78  PQVIFLPPAPLHPHIYS-NGHICLGI 102
           P++ F+     HP+I S  G ICL +
Sbjct: 87  PKIKFVTKI-WHPNISSQTGAICLDV 111

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 50  VNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPA----PLHPHIYSNGHICLGI 102
           + G   T YAN  FE  V FP+ YP   P V            +P++Y++G +CL I
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSI 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	3e-38
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	5e-37
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	6e-37
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-27
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	2e-27
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	6e-27
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	7e-27
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	8e-27
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	3e-26
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	4e-26
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	5e-26
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	5e-26
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	7e-26
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-25
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	1e-25
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	2e-25
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	4e-25
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	5e-25
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	1e-24
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	2e-24
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	5e-24
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	6e-24
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	7e-24
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	7e-24
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	1e-23
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	2e-23
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	4e-23
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	4e-23
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	6e-22
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	6e-22
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-21
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	2e-21
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	2e-21
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	2e-21
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-21
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	5e-21
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	9e-21
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	1e-20
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	1e-20
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-20
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	3e-20
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	4e-20
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	5e-20
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	5e-20
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	8e-20
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	9e-20
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	9e-20
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	5e-19
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	6e-19
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	1e-17

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  123 bits (312), Expect = 3e-38
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYAN 60
           T       K     A+ R+QKEL  +  NPP      V   N++ WI++  G   T+YAN
Sbjct: 7   TVEKHIKTKYNLGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYAN 66

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           E +++++ FP++YP++ P V FL   P H H+YSNG ICL +
Sbjct: 67  EVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSV 108

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  120 bits (303), Expect = 5e-37
 Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           A+ R+QKEL  +  NPP      V  +N++ WI++  G   T+YANE ++L++ FP+ YP
Sbjct: 7   ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++ P V FL   P H H+YSNG ICL +
Sbjct: 67  LKPPIVYFLQKPPKHTHVYSNGDICLSL 94

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  120 bits (303), Expect = 6e-37
 Identities = 46/104 (44%), Positives = 64/104 (61%), Gaps = 5/104 (4%)

Query: 3   SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK---HKVTDNLQRWIIEVNGAPGTLYA 59
           SS    R +++     RLQKEL+  Q +PP G       V +++ +WI+++ GAPGTLY 
Sbjct: 11  SSGLVPRGSMAS-MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYE 69

Query: 60  NETFELQVDFPEHYPMEAPQVIFL-PPAPLHPHIYSNGHICLGI 102
            E F+L   F   YP ++PQV+F     P+HPH+YSNGHICL I
Sbjct: 70  GEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSI 113

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 97.8 bits (244), Expect = 1e-27
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           S  A  RL ++    + + P G     + DN+  W   + G   T Y + TF L ++F E
Sbjct: 2   STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 61

Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            YP + P V FL     HP++Y+NG ICL I
Sbjct: 62  EYPNKPPHVKFLSE-MFHPNVYANGEICLDI 91

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 96.6 bits (241), Expect = 2e-27
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           S  A  RL ++    Q +PPAG       +N+  W   + G   T +   TF+L + F E
Sbjct: 2   STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSE 61

Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            YP + P V F+     HP+IY++G ICL I
Sbjct: 62  DYPNKPPTVRFVSR-MFHPNIYADGSICLDI 91

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 95.8 bits (239), Expect = 6e-27
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 13  SKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFELQ 66
           S +   RLQ+E  +W+ + P GF      K   + +LQ+W   + G  GT +A   + + 
Sbjct: 2   SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPIT 61

Query: 67  VDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           V++P  YP + P+V F      HP++Y +G ICL I
Sbjct: 62  VEYPNEYPSKPPKVKFPAGF-YHPNVYPSGTICLSI 96

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 96.2 bits (240), Expect = 7e-27
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 3   SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANE 61
           SS    R ++   A   L ++  + + N   G   K V++++  W +E+ G   +++   
Sbjct: 11  SSGLVPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGL 70

Query: 62  TFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN-GHICLGI 102
            F+L + F   Y    P V F+   P HP++  + G  C+  
Sbjct: 71  VFQLTIHFTSEYNYAPPVVKFITI-PFHPNVDPHTGQPCIDF 111

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 95.8 bits (239), Expect = 8e-27
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 7   PSRKALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYAN 60
                 S +   RLQ+E  +W+ + P GF            +L  W + + G P T +  
Sbjct: 2   HHHHHHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEG 61

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             ++L + FPE YP   P+  F PP   HP++Y +G +CL I
Sbjct: 62  GLYKLTMAFPEEYPTRPPKCRFTPP-LFHPNVYPSGTVCLSI 102

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 94.2 bits (235), Expect = 3e-26
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYA 59
           MT+S            S RLQ+EL    ++   G       DNL +W+  ++G   T+Y 
Sbjct: 1   MTTSKERHS------VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYE 54

Query: 60  NETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           +  ++L ++FP  YP + P V F  P   HP++  +G+ICL I
Sbjct: 55  SLKYKLTLEFPSDYPYKPPVVKFTTP-CWHPNVDQSGNICLDI 96

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 93.4 bits (233), Expect = 4e-26
 Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           S +A  R+QKEL +   +PPA      V D+L  W   + G P + Y    F L + FP 
Sbjct: 2   SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61

Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            YP + P+V F      HP+I SNG ICL I
Sbjct: 62  DYPFKPPKVAFTTRI-YHPNINSNGSICLDI 91

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 94.0 bits (234), Expect = 5e-26
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVT--DNLQRWIIEVNGAPGTLYANETFELQVDFP 70
           +  A  RL  E  +  +NPP G        +N   W   + G   T +    F   + FP
Sbjct: 1   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFP 60

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             YP+  P++ F      HP+IY +G +C+ I
Sbjct: 61  LDYPLSPPKMRFTCEM-FHPNIYPDGRVCISI 91

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 94.0 bits (234), Expect = 5e-26
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHK--VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
           SK A  RL KEL +   + P G        +N+  W   + G P T YA+  F  +++FP
Sbjct: 2   SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFP 61

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           + YP+  P++ F P   LHP+IY NG +C+ I
Sbjct: 62  KDYPLSPPKLTFTPSI-LHPNIYPNGEVCISI 92

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 93.6 bits (233), Expect = 7e-26
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYAN 60
              + PS  A       RLQ+EL+   ++   G      +DNL +W+  ++GA GT+Y +
Sbjct: 17  RKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYED 76

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             ++L ++FP  YP  AP V FL P   HP++ + G+I L I
Sbjct: 77  LRYKLSLEFPSGYPYNAPTVKFLTP-CYHPNVDTQGNISLDI 117

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 92.8 bits (231), Expect = 1e-25
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 11  ALSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFE 64
            +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+
Sbjct: 3   HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 62

Query: 65  LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           L++ F + YP   P+  F PP   HP++Y +G +CL I
Sbjct: 63  LRMLFKDDYPSSPPKCKFEPP-LFHPNVYPSGTVCLSI 99

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 92.8 bits (231), Expect = 1e-25
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYAN 60
              S+       + A  R+ KEL +   +PP       V D++  W   + G   + Y+ 
Sbjct: 8   HHHSSGRENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSG 67

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             F L + FP  YP + P+V F      HP+I S G ICL I
Sbjct: 68  GVFFLNIHFPSDYPFKPPKVNFTTKI-YHPNINSQGAICLDI 108

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 92.4 bits (230), Expect = 2e-25
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 4   SSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANET 62
                      +A  R+ KEL +   +PPA      V D++  W   + G   + Y    
Sbjct: 8   HPMSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGV 67

Query: 63  FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           F L + FP  YP + P+V F      HP+I SNG ICL I
Sbjct: 68  FFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDI 106

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 91.7 bits (228), Expect = 4e-25
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFP 70
           S  +   L  EL   Q  P  GF+  + D  +L  W + + G P T Y    F+ ++ FP
Sbjct: 5   SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFP 64

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             YP   P   FL     HP+IY  G +C+ I
Sbjct: 65  IDYPYSPPAFRFLTKM-WHPNIYETGDVCISI 95

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 92.1 bits (229), Expect = 5e-25
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYAN 60
           +  S      L   ++ R+QKEL +  ++PP         DN+  W   + G PG++Y  
Sbjct: 35  SKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEG 94

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             F L + F   YP + P+V F      H +I S G ICL I
Sbjct: 95  GVFFLDITFTPEYPFKPPKVTFRTRIY-HCNINSQGVICLDI 135

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 90.5 bits (225), Expect = 1e-24
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 1   MTSSSAPSRKA--LSKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGT 56
           M SS      +  L    S  L+++L E   NP  GF   + D  +L RW + + G P T
Sbjct: 1   MGSSHHHHHHSSGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDT 60

Query: 57  LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           LY    F+  + FP+ YP+  P++ F+     HP++  NG +C+ I
Sbjct: 61  LYEGGVFKAHLTFPKDYPLRPPKMKFITE-IWHPNVDKNGDVCISI 105

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 89.6 bits (223), Expect = 2e-24
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 4   SSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANET 62
           S   + + L       + KE+     +PP G K     ++L    + + G  GT YA   
Sbjct: 2   SMNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGL 61

Query: 63  FELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           F +++   + +P   P+  FL     HP++ +NG IC+ +
Sbjct: 62  FRMKLLLGKDFPASPPKGYFLTKI-FHPNVGANGEICVNV 100

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 88.5 bits (220), Expect = 5e-24
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 11  ALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
             +     R+ KE  +   +P  G       DNL+ + + + G   + Y +  FEL++  
Sbjct: 1   GSAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYL 60

Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P+ YPMEAP+V FL     HP+I   G ICL +
Sbjct: 61  PDDYPMEAPKVRFLTKI-YHPNIDRLGRICLDV 92

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 88.1 bits (219), Expect = 6e-24
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 11  ALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
           A S     R+ KE       P  G K      N + + + + G   + +   TF+L++  
Sbjct: 1   AGSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFL 60

Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           PE YPM AP+V F+     HP++   G ICL I
Sbjct: 61  PEEYPMAAPKVRFMTKI-YHPNVDKLGRICLDI 92

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 88.6 bits (220), Expect = 7e-24
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYAN 60
           +++++ S + +S +    L KE+ E + N P   K H    N               Y  
Sbjct: 2   SATASDSTRRVS-VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQG 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             F+ + + P+ Y M  P+V  L     HP+I   G ICL +
Sbjct: 61  GKFQFETEVPDAYNMVPPKVKCLTKI-WHPNITETGEICLSL 101

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 88.6 bits (220), Expect = 7e-24
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           S   ++RL++EL      PP G    +  D +     ++ G   T Y    F+L+V  PE
Sbjct: 2   SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE 61

Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            YP E PQ+ FL P   HP+I S G ICL +
Sbjct: 62  RYPFEPPQIRFLTPI-YHPNIDSAGRICLDV 91

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 91.9 bits (228), Expect = 1e-23
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 15  IASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  Y
Sbjct: 3   MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62

Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG I L I
Sbjct: 63  PFKPPKVAFTTRI-YHPNINSNGSISLDI 90

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 86.9 bits (216), Expect = 2e-23
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 11  ALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDF 69
            + +    R+ KE       PP G     V +N + + I +NG  GT Y   T++L++  
Sbjct: 1   GIPR----RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFL 56

Query: 70  PEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           PE YPME P+V FL     HP+I   G ICL I
Sbjct: 57  PEQYPMEPPKVRFLTKI-YHPNIDKLGRICLDI 88

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 86.7 bits (215), Expect = 4e-23
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 4   SSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETF 63
                    +  A  R+QK++ E  +           D+L  + + +       Y +  F
Sbjct: 15  EEEKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKF 73

Query: 64  ELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
                  + YP + P+V        HP+I   G++ L I
Sbjct: 74  VFSFKVGQGYPHDPPKVKCETM-VYHPNIDLEGNVALNI 111

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 87.5 bits (217), Expect = 4e-23
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 3   SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANE 61
           SS   +          RLQKEL + +         H    N   W+  + G  GT Y   
Sbjct: 11  SSGRENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGG 70

Query: 62  TFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN-GHICLGI 102
            F L +  P  YP   P++ F+     HP+I S  G ICL +
Sbjct: 71  HFTLAITIPNDYPYNPPKIKFVTKI-WHPNISSQTGAICLDV 111

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 84.1 bits (208), Expect = 6e-22
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYAN 60
           + SS  S++A    A+ RL+++ +  + +P        +  N+  W   V G   T Y  
Sbjct: 2   SMSSTSSKRA-PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEG 60

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGIASF 105
             +  ++ FP  +P + P +  + P   +     N  +CL I  F
Sbjct: 61  GYYHGKLIFPREFPFKPPSIYMITP---NGRFKCNTRLCLSITDF 102

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 83.2 bits (206), Expect = 6e-22
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 16  ASNRLQKELVEWQVNPP-----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
            S RL  EL   Q          G +      L  W   + G PGT++ N  + L +   
Sbjct: 22  RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           ++YP   P V F         + + G +    
Sbjct: 82  DNYPDSPPTVKFDTKI-EMSCVDNCGRVIKNN 112

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 81.9 bits (203), Expect = 2e-21
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFP 70
           S +AS R+ KEL + Q  PP   ++  +D  N+  W   +       Y  + F L++ FP
Sbjct: 2   SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFP 60

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             YP + P + F      HP++  NG ICL I
Sbjct: 61  PEYPFKPPMIKFTTKI-YHPNVDENGQICLPI 91

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 82.7 bits (204), Expect = 2e-21
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 2   TSSSAP---SRKALSKIASNRLQKELVEWQVNPPAGFKH----KVTDNLQRWIIEVNGA- 53
           +S   P      + S  AS+RL KEL +   +            + D+L  W +++    
Sbjct: 11  SSGLVPRGSGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVD 70

Query: 54  PGTLYAN-----------ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P +   +           E   L   F +++P + P V  + P     ++   G +C+ +
Sbjct: 71  PDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMEL 130

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 81.6 bits (202), Expect = 2e-21
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 10  KALSKIASNRLQKELVEWQVNPPAGFKH----KVTDNLQRWIIEVNGAPGTLYANETFEL 65
            A++ IA  R+++E  E   +            V +N      E+ G P T Y    ++L
Sbjct: 3   MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 62

Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
           ++  PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 63  EIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 99

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 81.6 bits (202), Expect = 2e-21
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72
           +  A  R+QK++ E  +           D+L  + + +       Y +  F       + 
Sbjct: 4   ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 62

Query: 73  YPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           YP + P+V        HP+I   G++CL I
Sbjct: 63  YPHDPPKVKCETM-VYHPNIDLEGNVCLNI 91

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 81.2 bits (201), Expect = 3e-21
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           AS RL KEL E +      F++   D  NL  W   +       Y    F ++++FP  Y
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61

Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P++ F      HP+I   G +CL +
Sbjct: 62  PFKPPKITFKTKI-YHPNIDEKGQVCLPV 89

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 80.9 bits (200), Expect = 5e-21
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 11  ALSKIASNRLQKELVEWQ---------VNPPAGFKHKVT----DNLQRWIIEVNGAPGTL 57
           A++    +R+ KE               NP  G    +      +L +W   ++G   T 
Sbjct: 2   AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTP 61

Query: 58  YANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI-YSNGHICLGI 102
           Y N  F + ++ P  YPM  P++ F+    LH ++  + G ICL I
Sbjct: 62  YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNI 107

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 80.0 bits (198), Expect = 9e-21
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
            + R+ KE+   + +P A    +     ++        G PGT Y    F + ++ P  Y
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 74  PMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
           P + P++ F      HP+I S  G ICL I
Sbjct: 62  PFKPPKMQFDTKV-YHPNISSVTGAICLDI 90

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 80.2 bits (198), Expect = 1e-20
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 16/108 (14%)

Query: 10  KALSKIASNRLQKELVEWQVNPPAGFKHKVT-------------DNLQRWIIEVNGAPGT 56
            ++  I++ R+ K+L        A  +   +             D +  WI++V     +
Sbjct: 3   GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADS 62

Query: 57  LYANE--TFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           +Y     T++L V F + YP E P V F+ P    P +   G IC  +
Sbjct: 63  VYGGAGNTYQLSVLFSDDYPHEPPTVRFVTP-VYSPLVTGEGGICDRM 109

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 80.1 bits (198), Expect = 1e-20
 Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 3   SSSAPSRKALSKI--ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYAN 60
           SS    R ++S       R+  ++++   +        +   L  ++++  G  GT Y  
Sbjct: 11  SSGLVPRGSMSSPSPGKRRMDTDVIKLIESKHEVT---ILGGLNEFVVKFYGPQGTPYEG 67

Query: 61  ETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI-YSNGHICLGI 102
             ++++VD P+ YP ++P + F+     HP+I  ++G +CL +
Sbjct: 68  GVWKVRVDLPDKYPFKSPSIGFMNKI-FHPNIDEASGTVCLDV 109

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 80.6 bits (199), Expect = 2e-20
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
            + R+ KE+   + +P A    +     ++        G PGT Y    F + ++ P  Y
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62

Query: 74  PMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
           P + P++ F      HP+I S  G ICL I
Sbjct: 63  PFKPPKMQFDTKV-YHPNISSVTGAICLDI 91

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 78.5 bits (194), Expect = 3e-20
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 18  NRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPME 76
             L ++  ++     AG+       + Q + +  +G  GT Y    +++ V  P+ YP  
Sbjct: 2   TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFA 61

Query: 77  APQVIFLPPAPLHPHI-YSNGHICLGI 102
           +P + F+    LHP++  ++G +CL +
Sbjct: 62  SPSIGFMNKL-LHPNVDEASGSVCLDV 87

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 78.1 bits (193), Expect = 4e-20
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 16  ASNRLQKELVEWQVNPP-----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
            + RL +EL + +          G        + +W   + G P + + N  + L +D  
Sbjct: 7   RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 66

Query: 71  EHYPMEAPQVIFLPPAPLHPHIY-SNGHICLGI 102
            +YP   P+V F+      P +  + G +    
Sbjct: 67  PNYPDSPPKVTFISKI-NLPCVNPTTGEVQTDF 98

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 78.2 bits (193), Expect = 5e-20
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 1   MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGF-----KHKVTDNLQRWIIEVNGAPG 55
            +         +    + RL +EL E Q     G      +      L RW   + G P 
Sbjct: 11  SSGLVPRGSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPR 70

Query: 56  TLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHI----CLGI 102
           T+Y N  + L+++    YP   P V F+        + S+  +     + +
Sbjct: 71  TIYENRIYSLKIECGPKYPEAPPFVRFVTK-INMNGVNSSNGVVDPRAISV 120

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 79.4 bits (196), Expect = 5e-20
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 13  SKIASNRLQKELVEWQ---VNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVD 68
           + IA  R+++E  E            K   V +N      E+ G P T Y    ++L++ 
Sbjct: 3   ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIK 62

Query: 69  FPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
            PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 63  IPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 96

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 78.6 bits (194), Expect = 8e-20
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 3   SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIE----VNGAPGTL 57
            +S+  +  LS  A  RL+++L    + P          D+  R        +       
Sbjct: 18  ENSSSIQPNLS-AARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGY 76

Query: 58  YANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           Y   +    +DF E YP+E P+V+ L     HP+I   G++CL I
Sbjct: 77  YNYGSINFNLDFNEVYPIEPPKVVCLKK-IFHPNIDLKGNVCLNI 120

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 79.6 bits (196), Expect = 9e-20
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 3   SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKH----KVTDNLQRWIIEVNGAPGTLY 58
            +   S   ++ IA  R+++E  E   +            V +N      E+ G P T Y
Sbjct: 45  MADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPY 104

Query: 59  ANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLGI 102
               ++L++  PE YP   P+V F+     HP+I S  G ICL I
Sbjct: 105 EGGRYQLEIKIPETYPFNPPKVRFITKI-WHPNISSVTGAICLDI 148

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 77.9 bits (192), Expect = 9e-20
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQVNPPAGF-----KHKVTDNLQRWIIEVNGAPGT 56
                   K +    + RL +EL E Q     G      +      L RW   + G P T
Sbjct: 22  LEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT 81

Query: 57  LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHI----CLGI 102
           +Y N  + L+++    YP   P V F+        + S+  +     + +
Sbjct: 82  IYENRIYSLKIECGPKYPEAPPFVRFVTKI-NMNGVNSSNGVVDPRAISV 130

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 76.4 bits (188), Expect = 5e-19
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 2   TSSSAPSRKALSKIASNRLQKELVEWQ-------------VNPPAGFK-HKVTDNLQRWI 47
               A ++   +     RL KEL + Q              +   G     V  ++ RW 
Sbjct: 19  FQGMATAQPRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWR 78

Query: 48  IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN-GHICLGI 102
             + G  GT Y    F L +  P  YP   P++ F+     HP+I S  G ICL I
Sbjct: 79  GFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKI-WHPNISSQTGAICLDI 133

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 75.9 bits (187), Expect = 6e-19
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 6   APSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFEL 65
                A +  ++ R + + +    +    +    +D +  + +E  G  GT Y + T+ L
Sbjct: 3   GSMSGAGNLRSNRRREMDYMRLCNSTRKVY---PSDTVAEFWVEFKGPEGTPYEDGTWML 59

Query: 66  QVDFPEHYPMEAPQVIFLPPAPLHPHI-YSNGHICLGI 102
            V  P  YP ++P + F     LHP++   +G +CL +
Sbjct: 60  HVQLPSDYPFKSPSIGFCNRI-LHPNVDERSGSVCLDV 96

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 74.7 bits (183), Expect = 1e-17
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 3   SSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVT-----DNLQRWIIEVNGAPGTL 57
           S    +  A S   + RL +E V    + P      V      + L    + + G   T 
Sbjct: 64  SQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTP 123

Query: 58  YANETFELQVDFPEHYPMEAPQVIFL----PPAPLHPHIYSNGHICLGI 102
           YAN  FE  V FP+ YP   P V            +P++Y++G +CL I
Sbjct: 124 YANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSI 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.98
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.98
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.98
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.94
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.82
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.61
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.28
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	96.94
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.89
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	96.74
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	95.87
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	95.75
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	94.94
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	92.38
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	91.96

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.3e-38  Score=213.76  Aligned_cols=100  Identities=25%  Similarity=0.487  Sum_probs=91.1

Q ss_pred             CCCCCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040            4 SSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus         4 s~~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f   82 (105)
                      |.+.+.+.++..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|
T Consensus         2 ~~~~~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f   81 (158)
T 1zdn_A            2 SMNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYF   81 (158)
T ss_dssp             ------CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred             cccccccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEe
Confidence            445577789999999999999999999999999999 8899999999999999999999999999999999999999999


Q ss_pred             ecCCCccccccCCCceEEecCC
Q 034040           83 LPPAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        83 ~tp~i~HPnv~~~G~iCl~iL~  104 (105)
                      .| ++|||||+.+|+|||++|+
T Consensus        82 ~t-~i~HPnv~~~G~iCl~iL~  102 (158)
T 1zdn_A           82 LT-KIFHPNVGANGEICVNVLK  102 (158)
T ss_dssp             SS-CCCCTTBCTTSBBCHHHHT
T ss_pred             cc-CcccCCCCCCCEEehhhcC
Confidence            99 7999999999999999884

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4.3e-37  Score=208.66  Aligned_cols=91  Identities=37%  Similarity=0.775  Sum_probs=86.7

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      |++.+.+||++|+++|+++++.|+++.+ + +|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| ++||
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~H   79 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP-SILH   79 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCSC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC-CCcc
Confidence            4568899999999999999999999998 4 69999999999999999999999999999999999999999999 7999


Q ss_pred             ccccCCCceEEecC
Q 034040           90 PHIYSNGHICLGIA  103 (105)
Q Consensus        90 Pnv~~~G~iCl~iL  103 (105)
                      |||+.+|+|||+||
T Consensus        80 PNv~~~G~iCl~iL   93 (165)
T 2ucz_A           80 PNIYPNGEVCISIL   93 (165)
T ss_dssp             TTBCTTSBBCCGGG
T ss_pred             CCCCCCCcEeehhh
Confidence            99999999999999

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9.9e-38  Score=206.32  Aligned_cols=97  Identities=43%  Similarity=0.924  Sum_probs=88.6

Q ss_pred             CCCcccccHHHHHHHHHHHHHHhhCCCCCeEEe--e-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040            6 APSRKALSKIASNRLQKELVEWQVNPPAGFKHK--V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus         6 ~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~--~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f   82 (105)
                      ......|+.. .+||++|+++|++++++|+.+.  + ++|++.|+++|.||+|||||||.|+++|.||++||++||+|+|
T Consensus        14 ~~~~~~Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F   92 (136)
T 2a7l_A           14 LVPRGSMASM-QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF   92 (136)
T ss_dssp             CCCGGGGTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEE
T ss_pred             cccchhccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEE
Confidence            3455666654 4999999999999999999875  5 7899999999999999999999999999999999999999999


Q ss_pred             ecCCCc--cccccCCCceEEecCC
Q 034040           83 LPPAPL--HPHIYSNGHICLGIAS  104 (105)
Q Consensus        83 ~tp~i~--HPnv~~~G~iCl~iL~  104 (105)
                      .| ++|  ||||+.+|+|||++|+
T Consensus        93 ~T-~i~~~HPNV~~~G~ICL~iL~  115 (136)
T 2a7l_A           93 TG-ENIPVHPHVYSNGHICLSILT  115 (136)
T ss_dssp             ES-SCCCCBTTBCTTCBBCCGGGT
T ss_pred             eC-CCcCCCccCCCCCeEEchhcC
Confidence            99 798  9999999999999984

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-37  Score=208.12  Aligned_cols=90  Identities=32%  Similarity=0.637  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      ..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| ++|||||
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv   86 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT-PCWHPNV   86 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeC-CcccCCC
Confidence            35789999999999999999999998 789999999999999999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|+|||++|+
T Consensus        87 ~~~G~iCl~iL~   98 (156)
T 2e2c_A           87 DQSGNICLDILK   98 (156)
T ss_dssp             CTTCBBCCGGGT
T ss_pred             ccCceEECcccc
Confidence            999999999984

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.2e-37  Score=202.40  Aligned_cols=89  Identities=42%  Similarity=0.837  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC-ccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP-LHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i-~HPnv   92 (105)
                      .+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++ |||||
T Consensus        20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~~HPnv   98 (136)
T 2h2y_A           20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQ-KPPKHTHV   98 (136)
T ss_dssp             SHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-SCCCCTTB
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeC-CCCCCCcC
Confidence            5789999999999999999999988 889999999999999999999999999999999999999999999 66 99999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|+|||++|+
T Consensus        99 ~~~G~ICl~iL~  110 (136)
T 2h2y_A           99 YSNGDICLSVLG  110 (136)
T ss_dssp             CTTCCBCCGGGT
T ss_pred             CCCCEEECcccc
Confidence            999999999985

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=3.3e-37  Score=210.18  Aligned_cols=92  Identities=35%  Similarity=0.682  Sum_probs=87.3

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP   90 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP   90 (105)
                      |++.+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t-~i~HP   79 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS-EMFHP   79 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccccc-CCccC
Confidence            3446789999999999999999999998 889999999999999999999999999999999999999999999 79999


Q ss_pred             cccCCCceEEecCC
Q 034040           91 HIYSNGHICLGIAS  104 (105)
Q Consensus        91 nv~~~G~iCl~iL~  104 (105)
                      ||+.+|+|||++|+
T Consensus        80 NI~~~G~ICl~iL~   93 (169)
T 1ayz_A           80 NVYANGEICLDILQ   93 (169)
T ss_dssp             TBCTTSBBCCGGGT
T ss_pred             CCCCCCeEeehhhc
Confidence            99999999999985

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=3.9e-37  Score=200.79  Aligned_cols=89  Identities=43%  Similarity=0.842  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC-ccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP-LHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i-~HPnv   92 (105)
                      .+.+||++|+++++++++.|+.+.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++ |||||
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~~HPnv   84 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ-KPPKHTHV   84 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-SCCCBTTB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeC-CCCCCCcC
Confidence            4679999999999999999999988 889999999999999999999999999999999999999999999 66 99999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|+|||++|+
T Consensus        85 ~~~G~iCl~iL~   96 (125)
T 2fo3_A           85 YSNGDICLSLLG   96 (125)
T ss_dssp             CTTSBBCCGGGT
T ss_pred             CCCCEEEchhcC
Confidence            999999999984

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.2e-36  Score=204.05  Aligned_cols=91  Identities=37%  Similarity=0.690  Sum_probs=87.5

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH   91 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn   91 (105)
                      +..+.+||++|+++|+++++.|+++.+ ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++||||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPn   80 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMT-KVYHPN   80 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEec-Ccccce
Confidence            457899999999999999999999999 889999999999999999999999999999999999999999999 799999


Q ss_pred             ccCCCceEEecCC
Q 034040           92 IYSNGHICLGIAS  104 (105)
Q Consensus        92 v~~~G~iCl~iL~  104 (105)
                      |+.+|+||+++|+
T Consensus        81 v~~~G~iCl~iL~   93 (151)
T 4gpr_A           81 INKNGVICLDILK   93 (151)
T ss_dssp             BCTTCBBCCGGGT
T ss_pred             ECCCCEEEccccc
Confidence            9999999999984

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-36  Score=207.14  Aligned_cols=91  Identities=35%  Similarity=0.623  Sum_probs=87.6

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH   91 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn   91 (105)
                      +..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPN   80 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT-PIYHPN   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeec-CCcccc
Confidence            457899999999999999999999999 889999999999999999999999999999999999999999999 799999


Q ss_pred             ccCCCceEEecCC
Q 034040           92 IYSNGHICLGIAS  104 (105)
Q Consensus        92 v~~~G~iCl~iL~  104 (105)
                      |+.+|+|||++|+
T Consensus        81 v~~~G~iCl~iL~   93 (169)
T 1yh2_A           81 IDSAGRICLDVLK   93 (169)
T ss_dssp             BCTTCBBCCGGGS
T ss_pred             CCcCCeEeccccc
Confidence            9999999999996

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=8.2e-37  Score=207.72  Aligned_cols=97  Identities=30%  Similarity=0.564  Sum_probs=87.6

Q ss_pred             CCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040            7 PSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus         7 ~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      +........+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| 
T Consensus        13 ~~~~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-   91 (166)
T 2ayv_A           13 GRENLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTT-   91 (166)
T ss_dssp             ------CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-
T ss_pred             ccccccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeecc-
Confidence            334445567899999999999999999999998 889999999999999999999999999999999999999999999 


Q ss_pred             CCccccccCCCceEEecCC
Q 034040           86 APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        86 ~i~HPnv~~~G~iCl~iL~  104 (105)
                      +||||||+.+|+|||++|+
T Consensus        92 ~i~HPNI~~~G~ICL~iL~  110 (166)
T 2ayv_A           92 KIYHPNINSQGAICLDILK  110 (166)
T ss_dssp             CCCBTTBCTTCBBCCGGGT
T ss_pred             CCcCCcCCCCCeEEccccc
Confidence            7999999999999999985

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=8.8e-37  Score=204.77  Aligned_cols=92  Identities=35%  Similarity=0.679  Sum_probs=87.6

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP   90 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP   90 (105)
                      |++.+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| ++|||
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HP   79 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS-RMFHP   79 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEec-CcccC
Confidence            3456789999999999999999999988 889999999999999999999999999999999999999999999 79999


Q ss_pred             cccCCCceEEecCC
Q 034040           91 HIYSNGHICLGIAS  104 (105)
Q Consensus        91 nv~~~G~iCl~iL~  104 (105)
                      ||+.+|+|||++|+
T Consensus        80 nv~~~G~iCl~iL~   93 (152)
T 2aak_A           80 NIYADGSICLDILQ   93 (152)
T ss_dssp             TBCTTSBBCCGGGT
T ss_pred             CCCCCCEEechhhc
Confidence            99999999999985

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.1e-37  Score=209.27  Aligned_cols=98  Identities=21%  Similarity=0.516  Sum_probs=91.7

Q ss_pred             CCCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040            6 APSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus         6 ~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      .-....|+..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|
T Consensus        14 ~~~~~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T   93 (169)
T 1yrv_A           14 LVPRGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT   93 (169)
T ss_dssp             -CCTTGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred             ccccCccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecC
Confidence            3456678888999999999999999999999998 889999999999999999999999999999999999999999999


Q ss_pred             CCCccccc-cCCCceEEecCC
Q 034040           85 PAPLHPHI-YSNGHICLGIAS  104 (105)
Q Consensus        85 p~i~HPnv-~~~G~iCl~iL~  104 (105)
                       +|||||| +.+|+|||++|+
T Consensus        94 -~i~HPNI~~~~G~ICL~iL~  113 (169)
T 1yrv_A           94 -IPFHPNVDPHTGQPCIDFLD  113 (169)
T ss_dssp             -CCCCTTBCTTTCCBCCHHHH
T ss_pred             -CCccCcccCCCCeEeehhhc
Confidence             7999999 789999999984

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.3e-37  Score=210.46  Aligned_cols=92  Identities=34%  Similarity=0.641  Sum_probs=86.3

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP   90 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP   90 (105)
                      ++..+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| +||||
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-~i~HP  105 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT-PCYHP  105 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESS-CCCST
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEec-CCccC
Confidence            6778899999999999999999999998 789999999999999999999999999999999999999999999 79999


Q ss_pred             cccCCCceEEecCC
Q 034040           91 HIYSNGHICLGIAS  104 (105)
Q Consensus        91 nv~~~G~iCl~iL~  104 (105)
                      ||+.+|+|||++|+
T Consensus       106 NV~~~G~ICL~iL~  119 (179)
T 1i7k_A          106 NVDTQGNISLDILK  119 (179)
T ss_dssp             TBCTTCBBCCGGGT
T ss_pred             ccccCCeEEcccCc
Confidence            99999999999984

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=2.3e-36  Score=205.34  Aligned_cols=93  Identities=33%  Similarity=0.629  Sum_probs=87.9

Q ss_pred             cccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      .....+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|||
T Consensus        15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T-~i~H   93 (165)
T 2c4o_A           15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT-RIYH   93 (165)
T ss_dssp             -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCB
T ss_pred             cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEec-CCcC
Confidence            34457899999999999999999999999 889999999999999999999999999999999999999999999 7999


Q ss_pred             ccccCCCceEEecCC
Q 034040           90 PHIYSNGHICLGIAS  104 (105)
Q Consensus        90 Pnv~~~G~iCl~iL~  104 (105)
                      |||+.+|+|||++|+
T Consensus        94 PnV~~~G~ICl~iL~  108 (165)
T 2c4o_A           94 PNINSNGSICLDILR  108 (165)
T ss_dssp             TTBCTTCBBCCGGGT
T ss_pred             CcCCCCCeEeehhhc
Confidence            999999999999985

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.6e-36  Score=205.57  Aligned_cols=89  Identities=29%  Similarity=0.607  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      .+.+||++|+++|+++++.|+++.+ + +|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| ++|||||
T Consensus         3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPNV   81 (164)
T 3h8k_A            3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTC-EMFHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCCTTB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcC-CCccCCC
Confidence            5789999999999999999999988 4 49999999999999999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|+|||++|+
T Consensus        82 ~~~G~iCl~iL~   93 (164)
T 3h8k_A           82 YPDGRVCISILH   93 (164)
T ss_dssp             CTTSBBCCGGGS
T ss_pred             CCCCcEeeeccc
Confidence            999999999995

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=1.5e-36  Score=203.27  Aligned_cols=90  Identities=38%  Similarity=0.695  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      ..+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv   81 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT-RIYHPNI   81 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEec-CcccCcC
Confidence            35789999999999999999999998 889999999999999999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|+|||++|+
T Consensus        82 ~~~G~iCl~iL~   93 (150)
T 1z2u_A           82 NSNGSICLDILR   93 (150)
T ss_dssp             CTTCBBCCGGGT
T ss_pred             CCCCeEeecccc
Confidence            999999999985

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.3e-37  Score=206.35  Aligned_cols=88  Identities=31%  Similarity=0.554  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      .+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||||+
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv~   83 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT-KIYHPNVD   83 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCCTTBC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeec-CcccCcCc
Confidence            4569999999999999999999999 889999999999999999999999999999999999999999999 79999999


Q ss_pred             CCCceEEecC
Q 034040           94 SNGHICLGIA  103 (105)
Q Consensus        94 ~~G~iCl~iL  103 (105)
                      .+|+|||++|
T Consensus        84 ~~G~iCl~iL   93 (154)
T 2c2v_B           84 KLGRICLDIL   93 (154)
T ss_dssp             TTCBBCCHHH
T ss_pred             cCCeEEchhc
Confidence            9999999987

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-36  Score=205.47  Aligned_cols=92  Identities=34%  Similarity=0.762  Sum_probs=86.5

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-cC-----CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TD-----NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~-----~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      .|..+.+||+||+++|+++++.|+.+.+ ++     |++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| 
T Consensus         7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t-   85 (163)
T 3rcz_B            7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP-   85 (163)
T ss_dssp             --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC-
Confidence            4568899999999999999999999998 44     8999999999999999999999999999999999999999999 


Q ss_pred             CCccccccCCCceEEecCC
Q 034040           86 APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        86 ~i~HPnv~~~G~iCl~iL~  104 (105)
                      +||||||+.+|+|||++|+
T Consensus        86 ~i~HPnV~~~G~iCl~iL~  104 (163)
T 3rcz_B           86 PLFHPNVYPSGTVCLSILN  104 (163)
T ss_dssp             CCCSTTBCTTSBBCCGGGC
T ss_pred             CCccCCCCCCCcEeccccC
Confidence            7999999999999999985

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=1.9e-36  Score=204.22  Aligned_cols=92  Identities=35%  Similarity=0.738  Sum_probs=85.8

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-c-----CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-----DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      |+..+.+||++|+++|+++++.|+.+.+ +     +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| 
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-   79 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA-   79 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT-
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC-
Confidence            3456889999999999999999999987 3     38999999999999999999999999999999999999999999 


Q ss_pred             CCccccccCCCceEEecCC
Q 034040           86 APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        86 ~i~HPnv~~~G~iCl~iL~  104 (105)
                      ++|||||+.+|+|||++|+
T Consensus        80 ~i~HPnv~~~G~iCl~iL~   98 (157)
T 2gjd_A           80 GFYHPNVYPSGTICLSILN   98 (157)
T ss_dssp             TCCCTTBCTTSBBCCGGGC
T ss_pred             CCccCCCCCCCcEeeeccc
Confidence            8999999999999999996

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=2.5e-36  Score=206.33  Aligned_cols=92  Identities=33%  Similarity=0.708  Sum_probs=87.3

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-c-CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-T-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      .+..+.+||+||+++|+++++.|+++.+ + +|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +|||
T Consensus        14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T-~i~H   92 (172)
T 2awf_A           14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT-EIWH   92 (172)
T ss_dssp             CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCC
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccC-CCcc
Confidence            3557899999999999999999999998 4 79999999999999999999999999999999999999999999 7999


Q ss_pred             ccccCCCceEEecCC
Q 034040           90 PHIYSNGHICLGIAS  104 (105)
Q Consensus        90 Pnv~~~G~iCl~iL~  104 (105)
                      |||+.+|+|||++|+
T Consensus        93 PNV~~~G~IClsiL~  107 (172)
T 2awf_A           93 PNVDKNGDVCISILH  107 (172)
T ss_dssp             TTBCTTCBBCCGGGS
T ss_pred             CCCCCCCcEehhhcC
Confidence            999999999999985

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=3e-36  Score=203.92  Aligned_cols=93  Identities=33%  Similarity=0.670  Sum_probs=87.5

Q ss_pred             cccHHHHHHHHHHHHHHhhCCCCCeEEee-c-----CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040           11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-T-----DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~-----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      .|+..+.+||++|+++|+++++.|+.+.+ +     +|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   82 (161)
T 2grr_A            3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP   82 (161)
T ss_dssp             -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence            36778899999999999999999999987 3     58999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCceEEecCC
Q 034040           85 PAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        85 p~i~HPnv~~~G~iCl~iL~  104 (105)
                       ++|||||+.+|+|||++|+
T Consensus        83 -~i~HPnv~~~G~iCl~iL~  101 (161)
T 2grr_A           83 -PLFHPNVYPSGTVCLSILE  101 (161)
T ss_dssp             -CCCSTTBCTTSBBCCGGGC
T ss_pred             -CcccCCCCCCCeEeehhcC
Confidence             7999999999999999986

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=5.6e-36  Score=202.18  Aligned_cols=94  Identities=32%  Similarity=0.600  Sum_probs=87.8

Q ss_pred             ccccHHHHHHHHHHHHHHhhC---CCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           10 KALSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        10 ~~~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      +.|+..+.+||++|+++|+++   ++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| 
T Consensus         3 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-   81 (159)
T 2bep_A            3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT-   81 (159)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeC-
Confidence            467788999999999999985   578999998 889999999999999999999999999999999999999999999 


Q ss_pred             CCccccccC-CCceEEecCC
Q 034040           86 APLHPHIYS-NGHICLGIAS  104 (105)
Q Consensus        86 ~i~HPnv~~-~G~iCl~iL~  104 (105)
                      +||||||+. +|+|||++|+
T Consensus        82 ~i~HPni~~~~G~iCl~iL~  101 (159)
T 2bep_A           82 KIWHPNISSVTGAICLDILK  101 (159)
T ss_dssp             CCCBTTBCTTTCBBCCGGGT
T ss_pred             CCCccCCCCCCCEEeChhhh
Confidence            799999995 9999999985

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=4.3e-36  Score=206.87  Aligned_cols=90  Identities=31%  Similarity=0.652  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH   91 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn   91 (105)
                      ..+.+||++|+++|+++++.|+++.+  ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++||||
T Consensus         6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPn   84 (183)
T 3rz3_A            6 PSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT-KMWHPN   84 (183)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecC-CCccCC
Confidence            46799999999999999999999994  789999999999999999999999999999999999999999999 799999


Q ss_pred             ccCCCceEEecCC
Q 034040           92 IYSNGHICLGIAS  104 (105)
Q Consensus        92 v~~~G~iCl~iL~  104 (105)
                      |+++|+|||++|+
T Consensus        85 V~~~G~iClsiL~   97 (183)
T 3rz3_A           85 IYETGDVCISILH   97 (183)
T ss_dssp             BCTTSBBCCTTC-
T ss_pred             CCCCCcEehhhcC
Confidence            9999999999995

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=6.2e-36  Score=200.14  Aligned_cols=87  Identities=38%  Similarity=0.679  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCC
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN   95 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~   95 (105)
                      .+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||||+.+
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv~~~   81 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT-KIYHPNIDKL   81 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-CCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEecc-CCccCCCCCC
Confidence            58999999999999999999998 889999999999999999999999999999999999999999999 7999999999


Q ss_pred             CceEEecCC
Q 034040           96 GHICLGIAS  104 (105)
Q Consensus        96 G~iCl~iL~  104 (105)
                      |+|||++|+
T Consensus        82 G~iCl~iL~   90 (149)
T 2r0j_A           82 GRICLDILK   90 (149)
T ss_dssp             CBBCCGGGT
T ss_pred             CEEechhcC
Confidence            999999985

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=4.8e-36  Score=203.86  Aligned_cols=96  Identities=25%  Similarity=0.460  Sum_probs=87.9

Q ss_pred             CCcccccHHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040            7 PSRKALSKIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus         7 ~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      +++...++.+.+||++|+++|+++++.|+++.+  ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         6 ~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t   84 (167)
T 3fn1_B            6 SDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLT   84 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECS
T ss_pred             CCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecC
Confidence            444555668899999999999999999999986  57899999998 899999999999999999999999999999999


Q ss_pred             CCCccccccCCCceEEecCC
Q 034040           85 PAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        85 p~i~HPnv~~~G~iCl~iL~  104 (105)
                       +||||||+.+|+|||++|+
T Consensus        85 -~i~HPnv~~~G~iCl~iL~  103 (167)
T 3fn1_B           85 -KIWHPNITETGEICLSLLR  103 (167)
T ss_dssp             -CCCCSSBCTTCCBCCGGGS
T ss_pred             -CcccCCCCCCCEEechhhc
Confidence             7999999999999999985

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=3.5e-36  Score=202.48  Aligned_cols=88  Identities=34%  Similarity=0.642  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      +.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| ++|||||+.
T Consensus         6 ~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv~~   84 (155)
T 1jat_A            6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT-KIYHPNIDR   84 (155)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECS-CCCBTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeec-ccccCCCCC
Confidence            469999999999999999999998 889999999999999999999999999999999999999999999 799999999


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|+|||++|+
T Consensus        85 ~G~iCl~iL~   94 (155)
T 1jat_A           85 LGRICLDVLK   94 (155)
T ss_dssp             TCCBCCGGGT
T ss_pred             CCEEEchhhc
Confidence            9999999984

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.7e-35  Score=205.60  Aligned_cols=90  Identities=33%  Similarity=0.658  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      ..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| +||||||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T-~i~HPNV  125 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRT-RIYHCNI  125 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCBTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccC-CCccceE
Confidence            56899999999999999999999999 889999999999999999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|+|||++|+
T Consensus       126 ~~~G~ICL~iL~  137 (194)
T 3bzh_A          126 NSQGVICLDILK  137 (194)
T ss_dssp             CTTCBBCCGGGT
T ss_pred             CCCCceechhhh
Confidence            999999999984

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=1e-35  Score=199.01  Aligned_cols=88  Identities=28%  Similarity=0.564  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      +.+||++|+++|+++++.|+.+.+ ++ |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPni~   80 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-KVYHPNIS   80 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeC-CCccCCCc
Confidence            469999999999999999999998 55 8999999999999999999999999999999999999999999 79999999


Q ss_pred             C-CCceEEecCC
Q 034040           94 S-NGHICLGIAS  104 (105)
Q Consensus        94 ~-~G~iCl~iL~  104 (105)
                      . +|+|||++|+
T Consensus        81 ~~~G~iCl~iL~   92 (149)
T 1fxt_A           81 SVTGAICLDILK   92 (149)
T ss_dssp             SSSCCBCCHHHH
T ss_pred             CCCCeEeCCcCC
Confidence            8 9999999873

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-35  Score=205.18  Aligned_cols=91  Identities=31%  Similarity=0.570  Sum_probs=82.5

Q ss_pred             cHHHHHHHHHHHHHHhhCCC-------------CCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCC
Q 034040           13 SKIASNRLQKELVEWQVNPP-------------AGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAP   78 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~-------------~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP   78 (105)
                      +..+.+||++|+++|+++++             .|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||
T Consensus        30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP  109 (193)
T 2f4z_A           30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP  109 (193)
T ss_dssp             --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence            45678999999999999876             7999998 889999999999999999999999999999999999999


Q ss_pred             eEEEecCCCcccccc-CCCceEEecCC
Q 034040           79 QVIFLPPAPLHPHIY-SNGHICLGIAS  104 (105)
Q Consensus        79 ~v~f~tp~i~HPnv~-~~G~iCl~iL~  104 (105)
                      +|+|.| +||||||+ .+|+|||++|+
T Consensus       110 ~V~F~T-~i~HPNI~~~~G~ICL~iL~  135 (193)
T 2f4z_A          110 KMKFVT-KIWHPNISSQTGAICLDILK  135 (193)
T ss_dssp             EEEESS-CCCBTTBCTTTCBBCCGGGT
T ss_pred             eEEEec-CCccCCCcCCCCEEECcccc
Confidence            999999 79999999 59999999985

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=2.1e-35  Score=207.91  Aligned_cols=92  Identities=28%  Similarity=0.551  Sum_probs=87.1

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP   90 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP   90 (105)
                      .++.+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||
T Consensus        20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T-~i~HP   98 (216)
T 2pwq_A           20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVT-KIWHP   98 (216)
T ss_dssp             CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBT
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccC-CCcCC
Confidence            4457899999999999999999999999 889999999999999999999999999999999999999999999 79999


Q ss_pred             ccc-CCCceEEecCC
Q 034040           91 HIY-SNGHICLGIAS  104 (105)
Q Consensus        91 nv~-~~G~iCl~iL~  104 (105)
                      ||+ .+|+|||++|+
T Consensus        99 NI~~~~G~ICL~iL~  113 (216)
T 2pwq_A           99 NISSQTGAICLDVLK  113 (216)
T ss_dssp             TBCTTTCBBCCHHHH
T ss_pred             CCcCCCCEEEchhhc
Confidence            999 59999999873

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=5.8e-35  Score=197.58  Aligned_cols=93  Identities=27%  Similarity=0.386  Sum_probs=84.9

Q ss_pred             cccHHHHHHHHHHHHHHhhCCCCC-eEEee--cCC--ccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           11 ALSKIASNRLQKELVEWQVNPPAG-FKHKV--TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~~~~~-~~~~~--~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      .+...+.+||+||+++|++++++| +.+.+  ++|  ++.|+++|.||++||||||.|+++|.||++||++||+|+|.| 
T Consensus        21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T-   99 (160)
T 2a4d_A           21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT-   99 (160)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB-
T ss_pred             eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEec-
Confidence            345779999999999999998888 67776  444  899999999999999999999999999999999999999999 


Q ss_pred             CCcccccc-CCCceEEecCC
Q 034040           86 APLHPHIY-SNGHICLGIAS  104 (105)
Q Consensus        86 ~i~HPnv~-~~G~iCl~iL~  104 (105)
                      +||||||+ .+|+||+++|+
T Consensus       100 ~i~HPNV~~~~G~ICl~iL~  119 (160)
T 2a4d_A          100 KINMNGVNSSNGVVDPRAIS  119 (160)
T ss_dssp             CCCCTTBCTTTCBBCGGGSH
T ss_pred             CceeCCEECCCCEEehhhcC
Confidence            79999999 69999999885

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=7.4e-35  Score=209.19  Aligned_cols=96  Identities=31%  Similarity=0.581  Sum_probs=88.9

Q ss_pred             CcccccHHHHHHHHHHHHHHhhC---CCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe
Q 034040            8 SRKALSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFL   83 (105)
Q Consensus         8 ~~~~~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~   83 (105)
                      ++..|+..+.+||++|+++|+++   ++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.
T Consensus        50 s~~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~  129 (253)
T 3e46_A           50 SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFI  129 (253)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             ccccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeec
Confidence            44678889999999999999987   478999999 88999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccC-CCceEEecCC
Q 034040           84 PPAPLHPHIYS-NGHICLGIAS  104 (105)
Q Consensus        84 tp~i~HPnv~~-~G~iCl~iL~  104 (105)
                      | +||||||+. +|+|||+||+
T Consensus       130 T-~i~HPNV~~~~G~ICL~iL~  150 (253)
T 3e46_A          130 T-KIWHPNISSVTGAICLDILK  150 (253)
T ss_dssp             S-CCCBTTBCTTTCBBCCGGGT
T ss_pred             C-CCccCCccCCCCeeeccccc
Confidence            9 799999995 9999999984

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=3.6e-35  Score=204.72  Aligned_cols=92  Identities=32%  Similarity=0.610  Sum_probs=84.9

Q ss_pred             ccHHHHHHHHHHHHHHhhC---CCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040           12 LSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP   87 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i   87 (105)
                      |+..+.+||++|+++|+++   ++.|+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +|
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i   80 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT-KI   80 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCcccccc-Cc
Confidence            4556799999999999987   368999999 889999999999999999999999999999999999999999999 89


Q ss_pred             ccccccC-CCceEEecCC
Q 034040           88 LHPHIYS-NGHICLGIAS  104 (105)
Q Consensus        88 ~HPnv~~-~G~iCl~iL~  104 (105)
                      |||||+. +|+|||++|+
T Consensus        81 ~HPnv~~~~G~iCl~iL~   98 (201)
T 3k9o_A           81 WHPNISSVTGAICLDILK   98 (201)
T ss_dssp             CBTTBCTTTCBBCCGGGT
T ss_pred             ccCCCcCCCCeeeCcccc
Confidence            9999995 9999999984

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-34  Score=199.97  Aligned_cols=98  Identities=21%  Similarity=0.448  Sum_probs=79.7

Q ss_pred             CCCCCCCCcccccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCe
Q 034040            1 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQ   79 (105)
Q Consensus         1 m~~s~~~~~~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~   79 (105)
                      |+++++.   ..+..+.+||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+
T Consensus         3 mss~~~~---~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~   79 (187)
T 2f4w_A            3 MSSTSSK---RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS   79 (187)
T ss_dssp             --------------CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCE
T ss_pred             CCccCCC---CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCc
Confidence            6555533   34567899999999999999999999998 8899999999999999999999999999999999999999


Q ss_pred             EEEecCCCccccccCCCceEEecCC
Q 034040           80 VIFLPPAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        80 v~f~tp~i~HPnv~~~G~iCl~iL~  104 (105)
                      |+|.| +  ||||+.+|+|||+||+
T Consensus        80 v~f~T-~--~~~~~~~G~ICL~iL~  101 (187)
T 2f4w_A           80 IYMIT-P--NGRFKCNTRLCLSITD  101 (187)
T ss_dssp             EEECS-C--CSSBCTTSCBC-----
T ss_pred             ccccC-C--CceeccCCeEeeeccc
Confidence            99999 5  9999999999999994

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=9.1e-35  Score=195.48  Aligned_cols=87  Identities=32%  Similarity=0.608  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEE-ee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKH-KV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~-~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      .+.+||++|+++|+++++.|+.+ .+ ++|++.|+++|. |++|||+||.|+|+|.||++||++||+|+|.| ++|||||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnV   81 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT-KIYHPNV   81 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESS-CCCBTTB
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeC-CCccCcC
Confidence            46899999999999999999999 56 789999999999 99999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecC
Q 034040           93 YSNGHICLGIA  103 (105)
Q Consensus        93 ~~~G~iCl~iL  103 (105)
                      +.+|+|||++|
T Consensus        82 ~~~G~iCl~iL   92 (155)
T 1wzv_A           82 DENGQICLPII   92 (155)
T ss_dssp             CTTCBCCCGGG
T ss_pred             CCCCeEeecCC
Confidence            99999999998

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=1.9e-34  Score=194.37  Aligned_cols=92  Identities=26%  Similarity=0.369  Sum_probs=84.4

Q ss_pred             cccHHHHHHHHHHHHHHhhC-CCCCeEEee-c-C--CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           11 ALSKIASNRLQKELVEWQVN-PPAGFKHKV-T-D--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~-~~~~~~~~~-~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      ..+..+.+||++|+++|+++ ++.|+++.+ + +  |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| 
T Consensus        17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t-   95 (156)
T 2q0v_A           17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT-   95 (156)
T ss_dssp             SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB-
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc-
Confidence            44557789999999999998 788999988 3 3  4899999999999999999999999999999999999999999 


Q ss_pred             CCccccccCCCce---EEecC
Q 034040           86 APLHPHIYSNGHI---CLGIA  103 (105)
Q Consensus        86 ~i~HPnv~~~G~i---Cl~iL  103 (105)
                      +||||||+.+|+|   ||++|
T Consensus        96 ~i~HPNV~~~G~icisCL~iL  116 (156)
T 2q0v_A           96 KIEMSCVDNCGRVIKNNLHIL  116 (156)
T ss_dssp             CCCCTTBCTTSBBCGGGSHHH
T ss_pred             ccccCCCccCCeEehhhcccc
Confidence            7999999999999   88776

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=3.6e-34  Score=195.60  Aligned_cols=94  Identities=27%  Similarity=0.505  Sum_probs=82.6

Q ss_pred             cccHHHHHHHHHHHHHHhh-C-C------CC---CeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCC
Q 034040           11 ALSKIASNRLQKELVEWQV-N-P------PA---GFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA   77 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~p   77 (105)
                      +|+..+.+||++|+++|++ . +      +.   ++.+.+  ++|++.|+++|.||++|||+||.|+|+|.||++||++|
T Consensus         2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P   81 (172)
T 2y9m_A            2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP   81 (172)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence            5778899999999999998 4 3      33   455555  67999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCcccccc-CCCceEEecCC
Q 034040           78 PQVIFLPPAPLHPHIY-SNGHICLGIAS  104 (105)
Q Consensus        78 P~v~f~tp~i~HPnv~-~~G~iCl~iL~  104 (105)
                      |+|+|.|++||||||+ .+|+|||++|+
T Consensus        82 P~v~f~t~~i~HPni~~~~G~iCl~iL~  109 (172)
T 2y9m_A           82 PKISFMQNNILHCNVKSATGEICLNILK  109 (172)
T ss_dssp             CEEEECTTSCCCTTEETTTTEECCGGGS
T ss_pred             CEEEEeeCCeecCCCcCCCCEEeccccC
Confidence            9999999559999996 79999999985

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.4e-34  Score=196.46  Aligned_cols=91  Identities=23%  Similarity=0.380  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHHHHHHHhhCCCCCeEEe-e-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040           10 KALSKIASNRLQKELVEWQVNPPAGFKHK-V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP   87 (105)
Q Consensus        10 ~~~s~~~~~Rl~~E~~~l~~~~~~~~~~~-~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i   87 (105)
                      ...++.+.+||++|+++|  ++++|+++. + ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.| +|
T Consensus        21 ~~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t-~i   96 (180)
T 2nvu_C           21 SKKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-MV   96 (180)
T ss_dssp             CCSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECS-CC
T ss_pred             cCCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceec-cC
Confidence            444567899999999999  578899998 5 78999999998 999999999999999999999999999999999 79


Q ss_pred             ccccccCCCceEEecCC
Q 034040           88 LHPHIYSNGHICLGIAS  104 (105)
Q Consensus        88 ~HPnv~~~G~iCl~iL~  104 (105)
                      |||||+.+|+|||++|+
T Consensus        97 ~HPNV~~~G~iCl~iL~  113 (180)
T 2nvu_C           97 YHPNIDLEGNVALNILR  113 (180)
T ss_dssp             CBTTBCTTSBBCCGGGT
T ss_pred             ccCCCCCCCcEEccccc
Confidence            99999999999999984

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=6.1e-35  Score=198.50  Aligned_cols=92  Identities=27%  Similarity=0.539  Sum_probs=85.5

Q ss_pred             cccHHHHHHHHHHHHHHhhCC------------CCCeEEee-cCCccceEEEEEcCCCCCCC--CCEEEEEEECCCCCCC
Q 034040           11 ALSKIASNRLQKELVEWQVNP------------PAGFKHKV-TDNLQRWIIEVNGAPGTLYA--NETFELQVDFPEHYPM   75 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~~------------~~~~~~~~-~~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~yP~   75 (105)
                      .|++.+.+||++|+++|++++            +.++.+.+ ++|++.|+++|.||++|||+  ||.|+++|.||++||+
T Consensus         4 ~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~   83 (167)
T 4ds2_A            4 SMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPH   83 (167)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTT
T ss_pred             cccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCC
Confidence            455567899999999999976            67888888 89999999999999999999  9999999999999999


Q ss_pred             CCCeEEEecCCCccccccCCCceEEecC
Q 034040           76 EAPQVIFLPPAPLHPHIYSNGHICLGIA  103 (105)
Q Consensus        76 ~pP~v~f~tp~i~HPnv~~~G~iCl~iL  103 (105)
                      +||+|+|.| ++|||||+.+|+|||++|
T Consensus        84 ~pP~v~f~t-~i~HPnv~~~G~iCl~il  110 (167)
T 4ds2_A           84 EPPTVRFVT-PVYSPLVTGEGGICDRMV  110 (167)
T ss_dssp             SCCEEEESS-CCCCSSCCTTSCCCTHHH
T ss_pred             CCCEEEEeC-CcccccCCCCCEEEcccC
Confidence            999999999 799999999999999987

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=195.18  Aligned_cols=91  Identities=27%  Similarity=0.386  Sum_probs=83.1

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCC-eEEee--cCC--ccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040           13 SKIASNRLQKELVEWQVNPPAG-FKHKV--TDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP   87 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~-~~~~~--~~~--~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i   87 (105)
                      ...+.+||++|+++|++++++| +.+.+  ++|  ++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +|
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T-~i  111 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT-KI  111 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECB-CC
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEec-cc
Confidence            3457899999999999998888 66765  344  899999999999999999999999999999999999999999 79


Q ss_pred             cccccc-CCCceEEecCC
Q 034040           88 LHPHIY-SNGHICLGIAS  104 (105)
Q Consensus        88 ~HPnv~-~~G~iCl~iL~  104 (105)
                      |||||+ .+|+||+++|+
T Consensus       112 ~HPNV~~~~G~ICl~iL~  129 (170)
T 2hlw_A          112 NMNGVNSSNGVVDPRAIS  129 (170)
T ss_dssp             CCSSBCSSSCBBCTTTCH
T ss_pred             ccCCEeCCCCEEEhhhcC
Confidence            999999 79999999884

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.3e-34  Score=192.12  Aligned_cols=87  Identities=25%  Similarity=0.444  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEe-e-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHK-V-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH   91 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn   91 (105)
                      +.+.+||++|+++|  ++++|+++. + ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.| +|||||
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPn   80 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-MVYHPN   80 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECS-CCCBTT
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEec-CCccCc
Confidence            36789999999999  568899998 5 78999999988 999999999999999999999999999999999 799999


Q ss_pred             ccCCCceEEecCC
Q 034040           92 IYSNGHICLGIAS  104 (105)
Q Consensus        92 v~~~G~iCl~iL~  104 (105)
                      |+.+|+|||++|+
T Consensus        81 v~~~G~iCl~iL~   93 (160)
T 1y8x_A           81 IDLEGNVCLNILR   93 (160)
T ss_dssp             BCTTCBBCCGGGT
T ss_pred             CCCCCeEEcccch
Confidence            9999999999984

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=6.8e-35  Score=205.22  Aligned_cols=88  Identities=28%  Similarity=0.563  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cC-CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~-~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      +.+||++|+++|+++++.|+++.+ ++ +++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+
T Consensus         3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T-~i~HPNI~   81 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-KVYHPNIS   81 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETT-TCCCSSSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccC-CCccCcCc
Confidence            579999999999999999999998 54 5679999999999999999999999999999999999999999 79999999


Q ss_pred             C-CCceEEecCC
Q 034040           94 S-NGHICLGIAS  104 (105)
Q Consensus        94 ~-~G~iCl~iL~  104 (105)
                      . +|+|||++|+
T Consensus        82 ~~~G~ICL~iL~   93 (215)
T 1tte_A           82 SVTGAICLDILR   93 (215)
T ss_dssp             SSSSCCCSSTTT
T ss_pred             CCCCEEECccCC
Confidence            9 9999999985

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=1.1e-33  Score=187.06  Aligned_cols=88  Identities=22%  Similarity=0.374  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHhhC-CCCCeEEee-c-C--CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           15 IASNRLQKELVEWQVN-PPAGFKHKV-T-D--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~-~~~~~~~~~-~-~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      .+.+||+||+++++++ ++.|+++.+ + +  |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +|||
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~H   84 (138)
T 1jat_B            6 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS-KINL   84 (138)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB-CCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEc-cccc
Confidence            5679999999999998 788999988 3 3  4899999999999999999999999999999999999999999 7999


Q ss_pred             ccccCC-Cce--EEecC
Q 034040           90 PHIYSN-GHI--CLGIA  103 (105)
Q Consensus        90 Pnv~~~-G~i--Cl~iL  103 (105)
                      |||+.+ |+|  ||++|
T Consensus        85 Pnv~~~~G~i~~cL~~l  101 (138)
T 1jat_B           85 PCVNPTTGEVQTDFHTL  101 (138)
T ss_dssp             TTBCTTTCBBCTTSHHH
T ss_pred             CCEeCCCCEEeeecccC
Confidence            999985 999  89876

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=4.3e-34  Score=192.01  Aligned_cols=88  Identities=31%  Similarity=0.576  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      .+.+||++|+++|+++++.|+.+..  ++|++.|+++|. |++|||+||.|+++|.||++||++||+|+|.| ++|||||
T Consensus         2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t-~i~HPnv   79 (154)
T 1c4z_D            2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKT-KIYHPNI   79 (154)
T ss_dssp             --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESS-CCCCTTB
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeC-CCccccC
Confidence            3568999999999999999998665  679999999998 99999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|+|||++|+
T Consensus        80 ~~~G~iCl~iL~   91 (154)
T 1c4z_D           80 DEKGQVCLPVIS   91 (154)
T ss_dssp             CTTCBBCCTTTS
T ss_pred             CCCCEEECCCCC
Confidence            999999999984

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=194.41  Aligned_cols=85  Identities=22%  Similarity=0.610  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      .+.+||++|+++|+.   .|+.+.+.+|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus        25 ~a~~RL~kEl~~l~~---~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t-~i~HPNV~~  100 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE---SKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN-KIFHPNIDE  100 (179)
T ss_dssp             HHHHHHHHHHHHHHH---SSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCBTTBCT
T ss_pred             HHHHHHHHHHHhcCc---CCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEec-CCccCcCCC
Confidence            589999999999985   5788877567899999999999999999999999999999999999999999 799999998


Q ss_pred             -CCceEEecC
Q 034040           95 -NGHICLGIA  103 (105)
Q Consensus        95 -~G~iCl~iL  103 (105)
                       +|+|||++|
T Consensus       101 ~~G~ICL~iL  110 (179)
T 2z5d_A          101 ASGTVCLDVI  110 (179)
T ss_dssp             TTCBBCHHHH
T ss_pred             CCCeEecccc
Confidence             999999987

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=7.9e-34  Score=190.56  Aligned_cols=85  Identities=24%  Similarity=0.583  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      +.+||++|++++++.   |+.+.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+.
T Consensus         3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPni~~   78 (152)
T 2onu_A            3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN-KLLHPNVDE   78 (152)
T ss_dssp             CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCTTBCT
T ss_pred             HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEec-CCccCcCcC
Confidence            458999999999873   788888 889999999999999999999999999999999999999999999 799999995


Q ss_pred             -CCceEEecCC
Q 034040           95 -NGHICLGIAS  104 (105)
Q Consensus        95 -~G~iCl~iL~  104 (105)
                       +|+|||++|+
T Consensus        79 ~~G~iCl~il~   89 (152)
T 2onu_A           79 ASGSVCLDVIN   89 (152)
T ss_dssp             TTCBBCHHHHH
T ss_pred             cCCeEeccccc
Confidence             9999999873

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=202.40  Aligned_cols=96  Identities=29%  Similarity=0.531  Sum_probs=87.1

Q ss_pred             cccccHHHHHHHHHHHHHHhhCCCCC----eEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEe
Q 034040            9 RKALSKIASNRLQKELVEWQVNPPAG----FKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFL   83 (105)
Q Consensus         9 ~~~~s~~~~~Rl~~E~~~l~~~~~~~----~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~   83 (105)
                      ...++..+.+||++|+++|+++++.|    +.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.
T Consensus        70 ~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           70 NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            34678899999999999999987775    44555 88999999999999999999999999999999999999999999


Q ss_pred             cC----CCccccccCCCceEEecCC
Q 034040           84 PP----APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        84 tp----~i~HPnv~~~G~iCl~iL~  104 (105)
                      |+    .+|||||+.+|+|||+||+
T Consensus       150 T~~g~~~ifHPNV~~~G~ICLsiL~  174 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYNDGKVCLSILN  174 (323)
T ss_dssp             CSTTTTCCCBTTBCTTCBBCCGGGT
T ss_pred             ccCCCcccccCCCCcCCeEechhhc
Confidence            93    2999999999999999995

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.98  E-value=1.5e-32  Score=207.81  Aligned_cols=90  Identities=33%  Similarity=0.612  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      +.+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++|||||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnv   80 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTT-RIYHPNI   80 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESS-CCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeec-ccccccc
Confidence            46899999999999999999999999 889999999999999999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +++|+|||++|+
T Consensus        81 ~~~G~iCl~il~   92 (399)
T 4ddg_A           81 NSNGSISLDILR   92 (399)
T ss_dssp             CTTCBBCCGGGT
T ss_pred             CCCCeEeCcccc
Confidence            999999999984

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.98  E-value=1.6e-32  Score=190.04  Aligned_cols=90  Identities=26%  Similarity=0.460  Sum_probs=82.8

Q ss_pred             cccHHHHHHHHHHHHHHhhCCCCCeEEe----e-cCCcc---ceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEE
Q 034040           11 ALSKIASNRLQKELVEWQVNPPAGFKHK----V-TDNLQ---RWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~----~-~~~~~---~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f   82 (105)
                      ...+.+.+||++|+++|+  .++|+++.    + ++|++   .|+++|. |++|||+||.|+++|.||++||++||+|+|
T Consensus        25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f  101 (190)
T 3o2u_A           25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC  101 (190)
T ss_dssp             CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred             CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence            334578999999999998  67899997    6 78999   9999997 788999999999999999999999999999


Q ss_pred             ecCCCccccccCCCceEEecCC
Q 034040           83 LPPAPLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        83 ~tp~i~HPnv~~~G~iCl~iL~  104 (105)
                      .| +||||||+.+|+||+++|+
T Consensus       102 ~t-~i~HPnV~~~G~iCl~iL~  122 (190)
T 3o2u_A          102 LK-KIFHPNIDLKGNVCLNILR  122 (190)
T ss_dssp             CS-CCCCTTBCTTSBBCCGGGT
T ss_pred             ec-CcccCCCCCCCeEechhcc
Confidence            99 7999999999999999984

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.98  E-value=8.6e-33  Score=188.68  Aligned_cols=86  Identities=24%  Similarity=0.532  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      .+.+||++|+++|++++. ++  ..++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.| +||||||+.
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v--~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t-~i~HPNi~~   87 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV--YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN-RILHPNVDE   87 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE--EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHhCCC-CC--CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeec-CcccccCcc
Confidence            567999999999999874 43  34889999999999999999999999999999999999999999999 899999995


Q ss_pred             -CCceEEecCC
Q 034040           95 -NGHICLGIAS  104 (105)
Q Consensus        95 -~G~iCl~iL~  104 (105)
                       +|+|||++|+
T Consensus        88 ~~G~iCl~iL~   98 (171)
T 1yf9_A           88 RSGSVCLDVIN   98 (171)
T ss_dssp             TTCBBCHHHHH
T ss_pred             cCCeEeccccc
Confidence             9999999873

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.97  E-value=5.5e-33  Score=191.84  Aligned_cols=97  Identities=22%  Similarity=0.400  Sum_probs=86.8

Q ss_pred             CCcccccHHHHHHHHHHHHHHhhCC---CCCeEEee-cCCccceEEEEEcC-CCCCCCC-----------CEEEEEEECC
Q 034040            7 PSRKALSKIASNRLQKELVEWQVNP---PAGFKHKV-TDNLQRWIIEVNGA-PGTLYAN-----------ETFELQVDFP   70 (105)
Q Consensus         7 ~~~~~~s~~~~~Rl~~E~~~l~~~~---~~~~~~~~-~~~~~~w~~~i~gp-~~tpy~g-----------g~f~~~i~fp   70 (105)
                      ..+..|+..+.+||++|+++|++++   +.++.+.+ ++|++.|+++|.|| ++|||+|           |.|+|+|.||
T Consensus        19 ~g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp   98 (186)
T 1zuo_A           19 SGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK   98 (186)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             CCcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence            3456678889999999999999987   68899988 88999999999997 9999998           8999999999


Q ss_pred             CCCCCCCCeEEEecCCCccc-cccCCCceEEecCC
Q 034040           71 EHYPMEAPQVIFLPPAPLHP-HIYSNGHICLGIAS  104 (105)
Q Consensus        71 ~~yP~~pP~v~f~tp~i~HP-nv~~~G~iCl~iL~  104 (105)
                      ++||++||+|+|.| .+||| ||+.+|+|||+||+
T Consensus        99 ~~YP~~PP~V~f~t-pi~hPnnV~~~G~ICL~iL~  132 (186)
T 1zuo_A           99 DNFPFDPPFVRVVL-PVLSGGYVLGGGALCMELLT  132 (186)
T ss_dssp             TTTTSSCCEEEEEE-SCEESTTBCGGGBBCCGGGS
T ss_pred             CCCCCCCCeEEEeC-CccCCCccCCCCcEEeccCC
Confidence            99999999999999 69999 69999999999994

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.94  E-value=3e-28  Score=164.39  Aligned_cols=85  Identities=21%  Similarity=0.383  Sum_probs=77.6

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEE
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVI   81 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~   81 (105)
                      ...-.+||++|+++|.+      ++.+ ++|...|.+++.||+||+|+||          .|+++|.||++||++||+|+
T Consensus        30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~  103 (172)
T 2z6o_A           30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA  103 (172)
T ss_dssp             THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred             cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence            35569999999999998      2444 7799999999999999999999          99999999999999999999


Q ss_pred             EecCCCccccccCCCceEEecC
Q 034040           82 FLPPAPLHPHIYSNGHICLGIA  103 (105)
Q Consensus        82 f~tp~i~HPnv~~~G~iCl~iL  103 (105)
                      |.+..++|||||.+|+|||+||
T Consensus       104 F~~~~~~hpnmY~~G~ICLdIL  125 (172)
T 2z6o_A          104 VPELDGKTAKMYRGGKICLTDH  125 (172)
T ss_dssp             CGGGTTTCSSBCTTSBBCCCTT
T ss_pred             eCCCCCCCCCCCCCCcEechhh
Confidence            9993399999999999999998

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.82  E-value=2.3e-21  Score=128.66  Aligned_cols=84  Identities=20%  Similarity=0.385  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEE
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f   82 (105)
                      ..=..||.+|++.|-+      ++.. +++-.+|...+.||+||+|+|+          .|++++.||.+||.+||.|+|
T Consensus        33 ~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F  106 (168)
T 3kpa_A           33 DKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL  106 (168)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence            4578999999999954      1222 3455789999999999999999          999999999999999999999


Q ss_pred             ecCCCccccccCCCceEEecC
Q 034040           83 LPPAPLHPHIYSNGHICLGIA  103 (105)
Q Consensus        83 ~tp~i~HPnv~~~G~iCl~iL  103 (105)
                      .+..++|||+|.+|+|||+++
T Consensus       107 p~ldgkt~kmYr~GkICLdIh  127 (168)
T 3kpa_A          107 PELEGKTVKMYRGGKICMTTH  127 (168)
T ss_dssp             GGGTTTCSSEETTTEECCCTT
T ss_pred             ccccCcCccccCCCcEEeccc
Confidence            994489999999999999985

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.61  E-value=7e-16  Score=104.11  Aligned_cols=86  Identities=17%  Similarity=0.190  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhhCCCCCeEE----ee-cCCccceEEEEEcCCCCCCCCCE---EEEEEECCCCCCCCCCeEEEecC----
Q 034040           18 NRLQKELVEWQVNPPAGFKH----KV-TDNLQRWIIEVNGAPGTLYANET---FELQVDFPEHYPMEAPQVIFLPP----   85 (105)
Q Consensus        18 ~Rl~~E~~~l~~~~~~~~~~----~~-~~~~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~yP~~pP~v~f~tp----   85 (105)
                      +|..+|+.++.+.- +++..    .. +|...++.+.+.|.-..+|+|+.   |.+.|.||++||++||.|.|.++    
T Consensus        31 ~~~~~dv~~~l~~y-p~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m  109 (162)
T 3r3q_A           31 RTTFHDSLALLDNF-HSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  109 (162)
T ss_dssp             HHHHHHHHHHHHHC-TTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred             hHHHHHHHHHHHhC-CCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence            55667777775532 23333    23 56667788888887778999998   88999999999999999977431    


Q ss_pred             --C---Cc-cccccCCCceEEecCC
Q 034040           86 --A---PL-HPHIYSNGHICLGIAS  104 (105)
Q Consensus        86 --~---i~-HPnv~~~G~iCl~iL~  104 (105)
                        +   |+ |||||++|+||+++|+
T Consensus       110 ~~~~~~I~~hpnVD~~G~I~lpyL~  134 (162)
T 3r3q_A          110 NTISSSLPIQEYIDSNGWIALPILH  134 (162)
T ss_dssp             TTSCTTSTHHHHBCTTSBBCCGGGG
T ss_pred             cccccccCCCCCCCCCCcEeCcccc
Confidence              1   77 9999999999999984

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.28  E-value=4e-12  Score=84.39  Aligned_cols=60  Identities=22%  Similarity=0.395  Sum_probs=52.1

Q ss_pred             cCCccceEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecC-----CCccccccCCCceEEecCC
Q 034040           40 TDNLQRWIIEVNGAPGTLYANETFEL--QVDFPEHYPMEAPQVIFLPP-----APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        40 ~~~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~yP~~pP~v~f~tp-----~i~HPnv~~~G~iCl~iL~  104 (105)
                      ..++..|.++|.    .+|+|+.|.+  .|.||++||++||.| |.+|     ...|||||.+|+||+++|+
T Consensus        50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~  116 (146)
T 3obq_A           50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH  116 (146)
T ss_dssp             TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH
T ss_pred             hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc
Confidence            468899999998    3899999995  899999999999999 7765     1489999999999998763

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=96.94  E-value=0.014  Score=36.71  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhCCCCCeEEee-c--CCccceEEEEEcCCCCCCC--CCEEEEEEECCCCCCCCCCeEEEec
Q 034040           19 RLQKELVEWQVNPPAGFKHKV-T--DNLQRWIIEVNGAPGTLYA--NETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        19 Rl~~E~~~l~~~~~~~~~~~~-~--~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      ....|+..|+.--+.-+.... .  .....+.+.+..+.+..-+  .-.+.+.+.||++||..+|.|.+.+
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            567899999876555555443 2  1234455555432221111  2367899999999999999998877

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.89  E-value=0.0059  Score=38.51  Aligned_cols=67  Identities=22%  Similarity=0.330  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      ..+...|+..|+.--+..+.+. .+....+.+.+..-.+..-+.-.+.+.+.||++||..||.+.+.+
T Consensus        12 ~e~q~~EleaL~sIy~d~~~~~-~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           12 GEEQRNELEALESIYPDSFTVL-SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEC-CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHccCceEEc-cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            4566789999987654444432 222356666665322222233478899999999999999998876

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.035  Score=35.35  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEeec-------CCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKVT-------DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~~-------~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      ...+-..|+..|+.--+..+.....       +....+.+.+....+ .-..-.+.+.+.+|++||..+|.|.+.++
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            3455677898887754444332222       124677788774332 11234678999999999999999998763

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=95.87  E-value=0.059  Score=35.23  Aligned_cols=68  Identities=19%  Similarity=0.140  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHHHHhhCCC--CCeEEeec--------------CC-c--cceEEEEEcCCCCCCCCCEEEEEEECCCCC
Q 034040           13 SKIASNRLQKELVEWQVNPP--AGFKHKVT--------------DN-L--QRWIIEVNGAPGTLYANETFELQVDFPEHY   73 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~--~~~~~~~~--------------~~-~--~~w~~~i~gp~~tpy~gg~f~~~i~fp~~y   73 (105)
                      ......+-..|+..|...-+  .-+.+...              .+ .  ..+.+.+.-. + +  ...+.+.|.+|.+|
T Consensus        12 ~~~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~-~-~--~~~i~L~v~lP~~Y   87 (154)
T 2daw_A           12 VKESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIE-E-P--KVKIDLQVTMPHSY   87 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEET-T-T--TEEEEEEEEECSST
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecC-C-C--CceEEEEEEcCCCC
Confidence            34445556678888877543  44544310              01 1  3445444422 1 1  13789999999999


Q ss_pred             CCCCCeEEEec
Q 034040           74 PMEAPQVIFLP   84 (105)
Q Consensus        74 P~~pP~v~f~t   84 (105)
                      |..+|.|...+
T Consensus        88 P~~~P~i~l~~   98 (154)
T 2daw_A           88 PYLALQLFGRS   98 (154)
T ss_dssp             TSSCCEEEEEC
T ss_pred             CCCCCcEEEEe
Confidence            99999999887

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=95.75  E-value=0.061  Score=34.05  Aligned_cols=67  Identities=19%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEeec-C-----CccceEEEEEcCCC-C-CCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKVT-D-----NLQRWIIEVNGAPG-T-LYANETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~~-~-----~~~~w~~~i~gp~~-t-py~gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      ..+...|+..|+.--+..+..... .     ....+.+.+.. .+ + .-..-.+.+.+.||++||..+|.|.+.+
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYP-QGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECC-TTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEec-CCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            456678999988765444444322 1     13456666652 21 1 0012368899999999999999998854

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.94  E-value=0.046  Score=34.34  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhhCCCC--CeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040           19 RLQKELVEWQVNPPA--GFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        19 Rl~~E~~~l~~~~~~--~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      +...|+..|+.--+.  .+.+..  ..+...+.+.+..... .=..-.+.+.+.+|++||..+|.|.+.+
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGF-MDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTT-TTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCC-CCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            356788888764322  333322  1234577777764221 0012368899999999999999997665

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=92.38  E-value=0.59  Score=31.71  Aligned_cols=60  Identities=18%  Similarity=0.369  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCc
Q 034040           18 NRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPL   88 (105)
Q Consensus        18 ~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~   88 (105)
                      .+|.+|+.++      |+.-..  +.+....++.+.-.     .|....++|.++.+||.++|.+...-|..+
T Consensus         4 ~~li~Ei~~i------GW~~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~   65 (186)
T 3zqs_A            4 SSLIEEIGTL------GWDKLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPVPF   65 (186)
T ss_dssp             CSHHHHHHHH------CGGGEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSSCC
T ss_pred             HHHHHHHHHh------CCceeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCCCc
Confidence            3678888888      443322  67788888888842     478999999999999999999887776444

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=91.96  E-value=0.1  Score=33.84  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             EEEEEEECCCCCCCCCCeEEEec
Q 034040           62 TFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        62 ~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      .+.+.+.+|.+||..||.+.+.+
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~   96 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRS   96 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEEC
T ss_pred             eEEEEEECCCCCCCCCCeEEEEc
Confidence            57889999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	5e-20
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	6e-20
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	3e-18
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	9e-18
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-18
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	9e-18
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	3e-17
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	1e-16
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	5e-16
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-15
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	1e-14
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-14
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-14
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	4e-14
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	7e-14
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	8e-14
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	3e-13
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	3e-13
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-13
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	4e-13
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	2e-12
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	2e-12
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	4e-12
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-12
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	8e-12
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	1e-11
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-11
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	2e-11
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	3e-11
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	5e-11
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-07

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 5e-20
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 16  ASNRLQKELVEWQVNPPAGFK---HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72
              RLQKEL+  Q +PP G       V +++ +WI+++ GAPGTLY  E F+L   F   
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63

Query: 73  YPMEAPQVIFLPPAPL-HPHIYSNGHICLGI 102
           YP ++PQV+F       HPH+YSNGHICL I
Sbjct: 64  YPFDSPQVMFTGENIPVHPHVYSNGHICLSI 94

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 76.8 bits (188), Expect = 6e-20
 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 15  IASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +A  R+QKEL +   +PPA      V D+L  W   + G P + Y    F L + FP  Y
Sbjct: 1   MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60

Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P+V F      HP+I SNG ICL I
Sbjct: 61  PFKPPKVAFTTR-IYHPNINSNGSICLDI 88

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 71.3 bits (174), Expect = 3e-18
 Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 19  RLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           R+QKEL  +  NPP      V  +N++ WI++  G   T+YANE ++L++ FP+ YP++ 
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61

Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P V FL   P H H+YSNG ICL +
Sbjct: 62  PIVYFLQKPPKHTHVYSNGDICLSL 86

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 9e-18
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           ++ R+QKEL E  ++PP         DN+  W   + G PG++Y    F L + F   YP
Sbjct: 3   SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 62

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P+V F      H +I S G ICL I
Sbjct: 63  FKPPKVTFRTR-IYHCNINSQGVICLDI 89

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 71.4 bits (174), Expect = 9e-18
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFP 70
           SK A  RL KEL +   + P G         N+  W   + G P T YA+  F  +++FP
Sbjct: 1   SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFP 60

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           + YP+  P++ F P   LHP+IY NG +C+ I
Sbjct: 61  KDYPLSPPKLTFTPS-ILHPNIYPNGEVCISI 91

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 70.5 bits (172), Expect = 9e-18
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 17  SNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           S  L+++L E   NP  GF   + D  +L RW + + G P TLY    F+  + FP+ YP
Sbjct: 1   SLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYP 60

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           +  P++ F+     HP++  NG +C+ I
Sbjct: 61  LRPPKMKFITE-IWHPNVDKNGDVCISI 87

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 69.8 bits (170), Expect = 3e-17
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           +S  L+K+L + +  P  GF   + D  ++ +W + V G P TLY    F+  +DFP  Y
Sbjct: 1   SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P++ F+     HP+I   G++C+ I
Sbjct: 61  PQKPPKMKFISE-IWHPNIDKEGNVCISI 88

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 1e-16
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 15  IASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFELQVD 68
           IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L++ 
Sbjct: 2   IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 61

Query: 69  FPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           F + YP   P+  F PP   HP++Y +G + L I
Sbjct: 62  FKDDYPSSPPKCKFEPPLF-HPNVYPSGTVSLSI 94

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 67.1 bits (163), Expect = 5e-16
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 1  MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYA 59
          MT+S    R ++SK    RLQ+EL    ++   G       DNL +W+  ++G   T+Y 
Sbjct: 1  MTTSK--ERHSVSK----RLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYE 54

Query: 60 NETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHIC 99
          +  ++L ++FP  YP + P V+       HP++  +G+IC
Sbjct: 55 SLKYKLTLEFPSDYPYK-PPVVKFTTPCWHPNVDQSGNIC 93

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 64.0 bits (155), Expect = 6e-15
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 13 SKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
          S  A  RL ++    + + P G     + DN+  W   + G   T Y + TF L ++F E
Sbjct: 1  STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDE 60

Query: 72 HYPMEAPQVIFLPPAPLHPHIYSNGHIC 99
           YP + P V FL     HP++Y+NG IC
Sbjct: 61 EYPNKPPHVKFLSE-MFHPNVYANGEIC 87

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 1e-14
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 17  SNRLQKELVEWQVNPPAGFKHKVTD-----NLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           + RL +EL E Q     G      +      L RW   + G P T+Y N  + L+++   
Sbjct: 7   NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGP 66

Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICLGIAS 104
            YP   P V F+    ++    SNG +     S
Sbjct: 67  KYPEAPPFVRFVTKINMNGVNSSNGVVDPRAIS 99

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 62.5 bits (151), Expect = 2e-14
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 19  RLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           R+ KE  +   +P  G   +   DNL+ + + + G   + Y +  FEL++  P+ YPMEA
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66

Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P+V FL     HP+I   G ICL +
Sbjct: 67  PKVRFLTKIY-HPNIDRLGRICLDV 90

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 2e-14
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEH 72
           +  A  R+QK++ E  +           D+L  + + +       Y +  F       + 
Sbjct: 1   ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 59

Query: 73  YPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           YP + P  +       HP+I   G++CL I
Sbjct: 60  YPHD-PPKVKCETMVYHPNIDLEGNVCLNI 88

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 61.7 bits (149), Expect = 4e-14
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPE 71
           +  +  RL ++  + Q +PPAG     T DN+  W   + G   T + + TF+L ++F E
Sbjct: 1   TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 60

Query: 72  HYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
            YP + P  +       HP++Y++G ICL
Sbjct: 61  EYPNK-PPTVKFISKMFHPNVYADGSICL 88

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 61.4 bits (148), Expect = 7e-14
 Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 19  RLQKELVEWQ-------------VNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFE 64
           RL KEL + Q              +   G     V  ++ RW   + G  GT Y    F 
Sbjct: 5   RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 64

Query: 65  LQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           L +  P  YP   P++ F+            G ICL I
Sbjct: 65  LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDI 102

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 8e-14
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 19  RLQKELVEWQVNPPAGFKHKVTD-NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEA 77
           R+ KE       P  G K +  + N + + + + G   + +   TF+L++  PE YPM A
Sbjct: 6   RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 65

Query: 78  PQVIFLPPAPLHPHIYSNGHICLGI 102
           P+V F+     HP++   G ICL I
Sbjct: 66  PKVRFMTKIY-HPNVDKLGRICLDI 89

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 59.7 bits (144), Expect = 3e-13
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 16 ASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPM 75
          ++ R + + +    +    +    +D +  + +E  G  GT Y + T+ L V  P  YP 
Sbjct: 1  SNRRREMDYMRLCNSTRKVY---PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 57

Query: 76 EAPQVIFLPPAPLHPHIYSNGHIC 99
          ++P + F      HP++       
Sbjct: 58 KSPSIGFCNRIL-HPNVDERSGSV 80

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 3e-13
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 16  ASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           A+ RL+++ +  + +P        +  N+  W   V G   T Y    +  ++ FP  +P
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 61

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P +  + P   +     N  +CL I
Sbjct: 62  FKPPSIYMITP---NGRFKCNTRLCLSI 86

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 4e-13
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           AS R+ KEL + Q  PP   ++  +D  N+  W   +       Y  + F L++ FP  Y
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEY 59

Query: 74  PMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           P + P + F      HP++  NG ICL I
Sbjct: 60  PFKPPMIKFTTK-IYHPNVDENGQICLPI 87

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.5 bits (138), Expect = 2e-12
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 12 LSKIASNRLQKELVEWQVNPPAGFK----HKVTDNLQRWIIEVNGAPGTLYANETFELQV 67
          ++ IA  R+++E  E   +            V +N      E+ G P T Y    ++L++
Sbjct: 1  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query: 68 DFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHIC 99
            PE YP   P+V F+     HP+I S  G IC
Sbjct: 61 KIPETYPFNPPKVRFITKIW-HPNISSVTGAIC 92

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 2e-12
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 12 LSKIASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFP 70
          +   A   L ++  + + N   G   K V++++  W +E+ G   +++    F+L + F 
Sbjct: 1  MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFT 60

Query: 71 EHYPMEAPQVIFLPPAPLHPHIYSNGHIC 99
            Y    P V F+            G  C
Sbjct: 61 SEYNYAPPVVKFITIPFHPNVDPHTGQPC 89

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 56.2 bits (135), Expect = 4e-12
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 13  SKIASN-RLQKELVEWQVNPP-----AGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQ 66
           SK+  N RL +EL + +          G        + +W   + G P + + N  + L 
Sbjct: 1   SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 60

Query: 67  VDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
           +D   +YP   P+V F+    L     + G +    
Sbjct: 61  IDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 96

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 56.3 bits (135), Expect = 4e-12
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 16 ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHY 73
           + R+ KE+   + +P A    +     ++        G PGT Y    F + ++ P  Y
Sbjct: 2  RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 74 PMEAPQVIFLPPAPLHPHIYSNGHIC 99
          P + P++ F      HP+I S     
Sbjct: 62 PFKPPKMQFDTKVY-HPNISSVTGAI 86

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 8e-12
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 16  ASNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
            ++RL++EL      PP G    +  D +     ++ G   T Y    F+L+V  PE YP
Sbjct: 3   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGIASF 105
            E PQ+ FL P   HP+I S G ICL +   
Sbjct: 63  FEPPQIRFLTP-IYHPNIDSAGRICLDVLKL 92

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 1e-11
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 16/106 (15%)

Query: 13  SKIASNRLQKELVEWQVNPPAGFK----HKVTDNLQRWIIEVNGAP------------GT 56
           S  AS+RL KEL +   +            + D+L  W +++                  
Sbjct: 2   SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 61

Query: 57  LYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLGI 102
               E   L   F +++P + P V  + P     ++   G +C+ +
Sbjct: 62  KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMEL 107

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 2e-11
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 16  ASNRLQKELVEWQVNPPAGFKHK-VTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
              RLQ+EL+   ++   G      +DNL +W+  ++GA GT+Y +  ++L ++FP  YP
Sbjct: 2   VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 61

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
             AP V FL P   HP++ + G+I L I
Sbjct: 62  YNAPTVKFLTP-CYHPNVDTQGNISLDI 88

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 2e-11
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 41  DNLQRWIIEVNGAPGTLYANETFELQVD--FPEHYPMEAPQVIFLPPAPL----HPHIYS 94
           D   R ++ + G     Y   T+ + +     + YP   P     P + +      H+ +
Sbjct: 44  DGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDA 103

Query: 95  NGHICLGI 102
           NG I L  
Sbjct: 104 NGKIYLPY 111

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 3e-11
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 12  LSKIASNRLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFP 70
           L       + KE+     +PP G K     ++L    + + G  GT YA   F +++   
Sbjct: 3   LPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLG 62

Query: 71  EHYPMEAPQVIFLPPAPLHPHIYSNGHICL 100
           + +P   P+  FL     HP++ +NG IC+
Sbjct: 63  KDFPASPPKGYFLTK-IFHPNVGANGEICV 91

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 5e-11
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 17  SNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYP 74
           S RL KEL E +      F++   D  NL  W   +       Y    F ++++FP  YP
Sbjct: 1   SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQG-LIVPDNPPYDKGAFRIEINFPAEYP 59

Query: 75  MEAPQVIFLPPAPLHPHIYSNGHICLGI 102
            + P++ F      HP+I   G +CL +
Sbjct: 60  FKPPKITFKTKIY-HPNIDEKGQVCLPV 86

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (105), Expect = 1e-07
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 13/85 (15%)

Query: 31  PPAGFKHKVTDNLQRWIIEVNGAPGTLYANET---FELQVDFPEHYPMEAPQVIFLPPA- 86
            P       +D   + ++ + G   T     +     + +  P  YP++ P +       
Sbjct: 39  RPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENF 98

Query: 87  ---------PLHPHIYSNGHICLGI 102
                    P+  +I SNG I L I
Sbjct: 99  DMNTISSSLPIQEYIDSNGWIALPI 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.97
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.97
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.78
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.64
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	98.17
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.93
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	94.88
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	91.26
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	89.99

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=1.6e-36  Score=203.91  Aligned_cols=91  Identities=37%  Similarity=0.758  Sum_probs=87.0

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP   90 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP   90 (105)
                      |..|+|||++|+++|++++++|+.+.+  ++|++.|+++|.||+||||+||.|++.|.||++||++||+|+|.| .+|||
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HP   79 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP-SILHP   79 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCSCT
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeec-Cceec
Confidence            457899999999999999999999998  579999999999999999999999999999999999999999999 79999


Q ss_pred             cccCCCceEEecCC
Q 034040           91 HIYSNGHICLGIAS  104 (105)
Q Consensus        91 nv~~~G~iCl~iL~  104 (105)
                      ||+.+|+||+++|+
T Consensus        80 nv~~~G~vCl~il~   93 (164)
T d2ucza_          80 NIYPNGEVCISILH   93 (164)
T ss_dssp             TBCTTSBBCCGGGS
T ss_pred             eEcCCCCeeecccc
Confidence            99999999999984

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=197.99  Aligned_cols=87  Identities=47%  Similarity=0.990  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee---cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC--cccc
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV---TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP--LHPH   91 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~---~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i--~HPn   91 (105)
                      .|||++|+++|++++++|+.+..   ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| ++  ||||
T Consensus         5 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t-~~~~~Hpn   83 (117)
T d2a7la1           5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTG-ENIPVHPH   83 (117)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEES-SCCCCBTT
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeC-CCcccccc
Confidence            59999999999999999998875   578999999999999999999999999999999999999999999 56  8999


Q ss_pred             ccCCCceEEecCC
Q 034040           92 IYSNGHICLGIAS  104 (105)
Q Consensus        92 v~~~G~iCl~iL~  104 (105)
                      |+.+|+||+++|+
T Consensus        84 v~~~G~iCl~~l~   96 (117)
T d2a7la1          84 VYSNGHICLSILT   96 (117)
T ss_dssp             BCTTCBBCCGGGT
T ss_pred             CcCCCeEEeecCc
Confidence            9999999999985

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=2.9e-36  Score=199.29  Aligned_cols=89  Identities=38%  Similarity=0.701  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      +|+|||++|+++|+++++.|+++.+ ++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.| .++||||+
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnV~   79 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTT-RIYHPNIN   79 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEec-CCceeeEC
Confidence            4789999999999999999999998 899999999999999999999999999999999999999999999 79999999


Q ss_pred             CCCceEEecCC
Q 034040           94 SNGHICLGIAS  104 (105)
Q Consensus        94 ~~G~iCl~iL~  104 (105)
                      ++|+||+++|+
T Consensus        80 ~~G~iCl~~l~   90 (147)
T d1z2ua1          80 SNGSICLDILR   90 (147)
T ss_dssp             TTCBBCCGGGT
T ss_pred             CCCCEeeehhc
Confidence            99999999985

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=3e-36  Score=199.94  Aligned_cols=89  Identities=34%  Similarity=0.703  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      .+.|||++|+++|+++++.|+++.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| ++|||||+
T Consensus         3 pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t-~i~HPnI~   81 (149)
T d1z3da1           3 PSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS-KMFHPNVY   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCTTBC
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecC-cccceeEc
Confidence            5779999999999999999999999 899999999999999999999999999999999999999999999 79999999


Q ss_pred             CCCceEEecCC
Q 034040           94 SNGHICLGIAS  104 (105)
Q Consensus        94 ~~G~iCl~iL~  104 (105)
                      .+|+||+++|+
T Consensus        82 ~~G~iCl~~l~   92 (149)
T d1z3da1          82 ADGSICLDILQ   92 (149)
T ss_dssp             TTCBBCCGGGT
T ss_pred             CCCCEEecccc
Confidence            99999999875

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=3e-36  Score=201.50  Aligned_cols=89  Identities=33%  Similarity=0.642  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      .+.|||++|+++|+++++.|+.+.+ ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| .++||||+
T Consensus         9 ~~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hpnv~   87 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT-PCWHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred             hHHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccc-cCcCCCCC
Confidence            4488999999999999999999999 899999999999999999999999999999999999999999999 79999999


Q ss_pred             CCCceEEecCC
Q 034040           94 SNGHICLGIAS  104 (105)
Q Consensus        94 ~~G~iCl~iL~  104 (105)
                      .+|+||+++|.
T Consensus        88 ~~G~icl~~l~   98 (156)
T d2e2ca_          88 QSGNICLDILK   98 (156)
T ss_dssp             TTCBBCCGGGT
T ss_pred             CCCCccccccC
Confidence            99999999884

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=6.9e-36  Score=198.89  Aligned_cols=89  Identities=35%  Similarity=0.634  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      .+.+||++|+++|+++++.|+++.+ ++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.| .+|||||+
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t-~i~HPnV~   80 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLT-PIYHPNID   80 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccC-CCCcCCcC
Confidence            5789999999999999999999999 899999999999999999999999999999999999999999999 79999999


Q ss_pred             CCCceEEecCC
Q 034040           94 SNGHICLGIAS  104 (105)
Q Consensus        94 ~~G~iCl~iL~  104 (105)
                      ++|+||+++|+
T Consensus        81 ~~g~icl~~l~   91 (154)
T d1yh2a1          81 SAGRICLDVLK   91 (154)
T ss_dssp             TTCBBCCGGGS
T ss_pred             CCCCccccccc
Confidence            99999999985

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=6.1e-36  Score=189.61  Aligned_cols=85  Identities=44%  Similarity=0.885  Sum_probs=82.3

Q ss_pred             HHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC-ccccccCCC
Q 034040           19 RLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP-LHPHIYSNG   96 (105)
Q Consensus        19 Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i-~HPnv~~~G   96 (105)
                      ||+||+++|++++++|+.+.+ ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| ++ +||||+++|
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t-~~~~hpni~~~G   80 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ-KPPKHTHVYSNG   80 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-SCCCBTTBCTTS
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEe-ccccCceECCCC
Confidence            899999999999999999999 899999999999999999999999999999999999999999999 65 899999999


Q ss_pred             ceEEecCC
Q 034040           97 HICLGIAS  104 (105)
Q Consensus        97 ~iCl~iL~  104 (105)
                      +||+++|+
T Consensus        81 ~iCl~il~   88 (109)
T d2fo3a1          81 DICLSLLG   88 (109)
T ss_dssp             BBCCGGGT
T ss_pred             eEEeeccc
Confidence            99999985

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=6.2e-36  Score=198.14  Aligned_cols=89  Identities=35%  Similarity=0.670  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      .+.|||++|+++|+++++.|+++.+ ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| +||||||+
T Consensus         2 ~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t-~i~HPnv~   80 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRT-RIYHCNIN   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeC-CCcCceEC
Confidence            5789999999999999999999999 899999999999999999999999999999999999999999999 79999999


Q ss_pred             CCCceEEecCC
Q 034040           94 SNGHICLGIAS  104 (105)
Q Consensus        94 ~~G~iCl~iL~  104 (105)
                      ++|+|||++|.
T Consensus        81 ~~G~iCl~~l~   91 (148)
T d1y6la_          81 SQGVICLDILK   91 (148)
T ss_dssp             TTCBBCCGGGT
T ss_pred             CCCeEEEEecC
Confidence            99999999874

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=192.25  Aligned_cols=86  Identities=33%  Similarity=0.746  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCC
Q 034040           18 NRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN   95 (105)
Q Consensus        18 ~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~   95 (105)
                      -||+||+++|++++++|+.+.+  ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| +++||||+.+
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hpni~~~   80 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT-EIWHPNVDKN   80 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCCCTTBCTT
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecC-CCCccccCCC
Confidence            4899999999999999999987  568999999999999999999999999999999999999999999 7999999999


Q ss_pred             CceEEecCC
Q 034040           96 GHICLGIAS  104 (105)
Q Consensus        96 G~iCl~iL~  104 (105)
                      |+||+++|+
T Consensus        81 G~iCl~iL~   89 (125)
T d2awfa1          81 GDVCISILH   89 (125)
T ss_dssp             CBBCCGGGS
T ss_pred             CEEEecccc
Confidence            999999984

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=197.50  Aligned_cols=90  Identities=34%  Similarity=0.679  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI   92 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv   92 (105)
                      ..|.|||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.| .+|||||
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t-~i~HPnI   80 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS-EMFHPNV   80 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCCTTB
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeecc-CCCccCC
Confidence            36789999999999999999999999 899999999999999999999999999999999999999999999 7999999


Q ss_pred             cCCCceEEecCC
Q 034040           93 YSNGHICLGIAS  104 (105)
Q Consensus        93 ~~~G~iCl~iL~  104 (105)
                      +.+|.||+++|.
T Consensus        81 ~~~G~icl~~l~   92 (153)
T d1ayza_          81 YANGEICLDILQ   92 (153)
T ss_dssp             CTTSBBCCGGGT
T ss_pred             CCCCcccccccc
Confidence            999999999874

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=7.7e-36  Score=198.03  Aligned_cols=91  Identities=22%  Similarity=0.548  Sum_probs=87.6

Q ss_pred             ccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccc
Q 034040           12 LSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHP   90 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HP   90 (105)
                      |+..|.+||+||+++++++++.|+++.+ ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| +++||
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t-~i~Hp   79 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT-IPFHP   79 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS-CCCCT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecc-ccccC
Confidence            6778999999999999999999999999 899999999999999999999999999999999999999999999 79999


Q ss_pred             ccc-CCCceEEecC
Q 034040           91 HIY-SNGHICLGIA  103 (105)
Q Consensus        91 nv~-~~G~iCl~iL  103 (105)
                      ||+ .+|+||+++|
T Consensus        80 nV~~~~G~iC~~~l   93 (148)
T d1yrva1          80 NVDPHTGQPCIDFL   93 (148)
T ss_dssp             TBCTTTCCBCCHHH
T ss_pred             ceecCccccccccc
Confidence            999 5899999987

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=196.69  Aligned_cols=93  Identities=26%  Similarity=0.520  Sum_probs=89.1

Q ss_pred             cccHHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           11 ALSKIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        11 ~~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      +++..+.|||++|+++|.+++++|+.+.+ ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| ++||
T Consensus         2 ~~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~H   80 (151)
T d1zdna1           2 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT-KIFH   80 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCC-CCCC
Confidence            56788999999999999999999999999 889999999999999999999999999999999999999999999 7999


Q ss_pred             ccccCCCceEEecCC
Q 034040           90 PHIYSNGHICLGIAS  104 (105)
Q Consensus        90 Pnv~~~G~iCl~iL~  104 (105)
                      |||+.+|+||+++|+
T Consensus        81 PnI~~~G~ic~~~l~   95 (151)
T d1zdna1          81 PNVGANGEICVNVLK   95 (151)
T ss_dssp             TTBCTTSBBCHHHHT
T ss_pred             ceecCCCCccccccc
Confidence            999999999998764

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=194.64  Aligned_cols=88  Identities=35%  Similarity=0.689  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      +.|||++|+++|+++++.|+++.+ ++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.| .+|||||+.
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnV~~   80 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT-PCYHPNVDT   80 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESS-CCCSTTBCT
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecC-CCCcccCCC
Confidence            579999999999999999999998 899999999999999999999999999999999999999999999 799999999


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|+||+++|.
T Consensus        81 ~G~icl~~l~   90 (146)
T d1i7ka_          81 QGNISLDILK   90 (146)
T ss_dssp             TCBBCCGGGT
T ss_pred             CCcccccccc
Confidence            9999999874

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=8.4e-35  Score=192.97  Aligned_cols=87  Identities=31%  Similarity=0.583  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCC
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN   95 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~   95 (105)
                      .|||++|+++|+++++.|+.+.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.| .++||||+.+
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPni~~~   82 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT-KIYHPNVDKL   82 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS-CCCBTTBCTT
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecC-CCCCceECCC
Confidence            48999999999999999999999 889999999999999999999999999999999999999999999 7999999999


Q ss_pred             CceEEecCC
Q 034040           96 GHICLGIAS  104 (105)
Q Consensus        96 G~iCl~iL~  104 (105)
                      |+||+++|+
T Consensus        83 G~icl~~l~   91 (149)
T d1j7db_          83 GRICLDILK   91 (149)
T ss_dssp             CBBCCGGGT
T ss_pred             CcEehHHhc
Confidence            999999884

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=193.84  Aligned_cols=89  Identities=33%  Similarity=0.666  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEee-cC-----CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCc
Q 034040           15 IASNRLQKELVEWQVNPPAGFKHKV-TD-----NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPL   88 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~~~~~~~~~-~~-----~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~   88 (105)
                      +|.+||++|+++|+++++.|+.+.+ ++     |+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.| .+|
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~   80 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP-PLF   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCC
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecc-ccc
Confidence            5899999999999999999999988 43     8999999999999999999999999999999999999999999 799


Q ss_pred             cccccCCCceEEecCC
Q 034040           89 HPHIYSNGHICLGIAS  104 (105)
Q Consensus        89 HPnv~~~G~iCl~iL~  104 (105)
                      ||||+.+|++|+++|.
T Consensus        81 HPnV~~~G~icl~~l~   96 (156)
T d2uyza1          81 HPNVYPSGTVSLSILE   96 (156)
T ss_dssp             STTBCTTSBBCCGGGC
T ss_pred             cccccccceeeecccC
Confidence            9999999999999984

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=192.01  Aligned_cols=87  Identities=34%  Similarity=0.654  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccCC
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSN   95 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~~   95 (105)
                      .|||++|+++|+++++.|+.+.+ ++|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|+| .+|||||+.+
T Consensus         5 ~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t-~i~HPnI~~~   83 (152)
T d1jata_           5 PKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT-KIYHPNIDRL   83 (152)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECS-CCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecC-CCCCCcCCCC
Confidence            58999999999999999999999 899999999999999999999999999999999999999999999 7999999999


Q ss_pred             CceEEecCC
Q 034040           96 GHICLGIAS  104 (105)
Q Consensus        96 G~iCl~iL~  104 (105)
                      |.+|+++|.
T Consensus        84 G~icl~~~~   92 (152)
T d1jata_          84 GRICLDVLK   92 (152)
T ss_dssp             CCBCCGGGT
T ss_pred             CCeeecccc
Confidence            999999874

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=2.7e-34  Score=192.53  Aligned_cols=87  Identities=32%  Similarity=0.690  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      ..||+||+++|++++++|+.+.+  ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.| .+|||||+.
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnI~~   80 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFIS-EIWHPNIDK   80 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECS-CCCCTTBCT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecC-CCCCcccCC
Confidence            46999999999999999999998  457999999999999999999999999999999999999999999 799999999


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|+||+++|+
T Consensus        81 ~G~vcl~~l~   90 (161)
T d1pzva_          81 EGNVCISILH   90 (161)
T ss_dssp             TSBBCCGGGC
T ss_pred             CCccchhhcC
Confidence            9999999984

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-34  Score=189.55  Aligned_cols=92  Identities=32%  Similarity=0.610  Sum_probs=86.3

Q ss_pred             ccHHHHHHHHHHHHHHhhC---CCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040           12 LSKIASNRLQKELVEWQVN---PPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP   87 (105)
Q Consensus        12 ~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i   87 (105)
                      |++.+.+||++|+++|+++   ...++.+.+ ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.| ++
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i   79 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT-KI   79 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecc-cC
Confidence            6889999999999999886   467899998 889999999999999999999999999999999999999999999 79


Q ss_pred             ccccccC-CCceEEecCC
Q 034040           88 LHPHIYS-NGHICLGIAS  104 (105)
Q Consensus        88 ~HPnv~~-~G~iCl~iL~  104 (105)
                      |||||+. +|+||++++.
T Consensus        80 ~Hpni~~~~g~ic~~~~~   97 (154)
T d2bepa1          80 WHPNISSVTGAICLDILK   97 (154)
T ss_dssp             CBTTBCTTTCBBCCGGGT
T ss_pred             CCCCeeCCCCcccccccc
Confidence            9999996 8999999874

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=189.75  Aligned_cols=86  Identities=30%  Similarity=0.578  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      .|||++|+++|++++..|+.+.+  ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.| .+|||||+.
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HPnV~~   78 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKT-KIYHPNIDE   78 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESS-CCCCTTBCT
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccC-CCCCcCCcc
Confidence            38999999999999999998777  67999999998 999999999999999999999999999999999 799999999


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|.||+++|+
T Consensus        79 ~G~icl~~l~   88 (144)
T d1c4zd_          79 KGQVCLPVIS   88 (144)
T ss_dssp             TCBBCCTTTS
T ss_pred             CCcccccccc
Confidence            9999999986

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=7.7e-34  Score=188.32  Aligned_cols=87  Identities=33%  Similarity=0.593  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      |.+||++|+++|+++++.|+.+.+  ++|+..|.+.| ||++|||+||.|+|+|.||++||++||+|+|.| +||||||+
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HpnI~   78 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTT-KIYHPNVD   78 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccC-CCCcceEC
Confidence            468999999999999999999888  56889999865 899999999999999999999999999999999 79999999


Q ss_pred             CCCceEEecCC
Q 034040           94 SNGHICLGIAS  104 (105)
Q Consensus        94 ~~G~iCl~iL~  104 (105)
                      ++|.||+++|+
T Consensus        79 ~~G~icl~~l~   89 (150)
T d1wzva1          79 ENGQICLPIIS   89 (150)
T ss_dssp             TTCBCCCGGGC
T ss_pred             CCCCccccccc
Confidence            99999999984

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=5.3e-33  Score=184.07  Aligned_cols=88  Identities=28%  Similarity=0.550  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccccc
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIY   93 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~   93 (105)
                      +.|||++|+++|+++++.|+++.+  ++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.| +||||||+
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t-~i~HpnI~   80 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDT-KVYHPNIS   80 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS-CCCBTTBC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecC-CCcCCccc
Confidence            689999999999999999999986  678999999999999999999999999999999999999999999 89999999


Q ss_pred             C-CCceEEecCC
Q 034040           94 S-NGHICLGIAS  104 (105)
Q Consensus        94 ~-~G~iCl~iL~  104 (105)
                      . +|.+|+++++
T Consensus        81 ~~~~~~~~~~~~   92 (149)
T d1fzya_          81 SVTGAICLDILK   92 (149)
T ss_dssp             TTTCCBCCGGGT
T ss_pred             CCcceeechhhc
Confidence            7 8889998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=3e-32  Score=182.80  Aligned_cols=88  Identities=32%  Similarity=0.616  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHhh-------------CCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEE
Q 034040           16 ASNRLQKELVEWQV-------------NPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVI   81 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~-------------~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~   81 (105)
                      ..+||+||+++|++             +...|+++.+ ++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            47899999999977             3566899998 899999999999999999999999999999999999999999


Q ss_pred             EecCCCcccccc-CCCceEEecCC
Q 034040           82 FLPPAPLHPHIY-SNGHICLGIAS  104 (105)
Q Consensus        82 f~tp~i~HPnv~-~~G~iCl~iL~  104 (105)
                      |.| .++||||+ .+|.||+++|.
T Consensus        82 F~t-~i~HPni~~~~G~icl~~l~  104 (161)
T d2f4za1          82 FVT-KIWHPNISSQTGAICLDILK  104 (161)
T ss_dssp             ESS-CCCBTTBCTTTCBBCCGGGT
T ss_pred             ecC-CCCCCceECCCCCeecCccc
Confidence            999 79999996 48999999874

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.97  E-value=2.2e-32  Score=182.78  Aligned_cols=87  Identities=24%  Similarity=0.452  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee--cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcccc
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPH   91 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPn   91 (105)
                      ++|.+||+||+++|++  ++++.+..  ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.| ++||||
T Consensus         2 ~~a~~Rl~kEl~~l~~--~~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t-~i~HPn   77 (157)
T d1y8xa1           2 SAAQLRIQKDINELNL--PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCET-MVYHPN   77 (157)
T ss_dssp             CHHHHHHHHHHHTCCC--CTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECS-CCCBTT
T ss_pred             CHHHHHHHHHHHHhCC--CCCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecc-cCCCcc
Confidence            4789999999999975  44555555  68999999988 899999999999999999999999999999999 799999


Q ss_pred             ccCCCceEEecCC
Q 034040           92 IYSNGHICLGIAS  104 (105)
Q Consensus        92 v~~~G~iCl~iL~  104 (105)
                      |+.+|+||++++.
T Consensus        78 v~~~G~ic~~~~~   90 (157)
T d1y8xa1          78 IDLEGNVCLNILR   90 (157)
T ss_dssp             BCTTCBBCCGGGT
T ss_pred             ccccceeeeeecc
Confidence            9999999999863

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.97  E-value=3.6e-31  Score=173.79  Aligned_cols=90  Identities=27%  Similarity=0.314  Sum_probs=80.5

Q ss_pred             cHHHHHHHHHHHHHHhhCCCCCeEEee-----cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCC
Q 034040           13 SKIASNRLQKELVEWQVNPPAGFKHKV-----TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAP   87 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~~~~~~~~-----~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i   87 (105)
                      -..+.+||+||+++++++.++++.+..     ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++
T Consensus         3 ~~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t-~i   81 (139)
T d2a4da1           3 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT-KI   81 (139)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB-CC
T ss_pred             ccchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEec-Cc
Confidence            357899999999999999988877766     236999999999999999999999999999999999999999999 79


Q ss_pred             ccccccC-CCceEEecC
Q 034040           88 LHPHIYS-NGHICLGIA  103 (105)
Q Consensus        88 ~HPnv~~-~G~iCl~iL  103 (105)
                      +||||+. +|.+|++.|
T Consensus        82 ~HpnV~~~~g~~~~~~l   98 (139)
T d2a4da1          82 NMNGVNSSNGVVDPRAI   98 (139)
T ss_dssp             CCTTBCTTTCBBCGGGS
T ss_pred             ccccCcCCCCEEcceec
Confidence            9999986 677776544

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.97  E-value=2.2e-31  Score=174.31  Aligned_cols=88  Identities=22%  Similarity=0.375  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHhhCC-CCCeEEee--cC--CccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCcc
Q 034040           15 IASNRLQKELVEWQVNP-PAGFKHKV--TD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLH   89 (105)
Q Consensus        15 ~~~~Rl~~E~~~l~~~~-~~~~~~~~--~~--~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~H   89 (105)
                      .+.+||+||+++++++. +.+++...  ++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.| +++|
T Consensus         4 p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t-~i~H   82 (136)
T d1jatb_           4 PRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS-KINL   82 (136)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB-CCCC
T ss_pred             chHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEec-cccc
Confidence            47899999999999985 45566655  33  4889999999999999999999999999999999999999999 7999


Q ss_pred             ccccC-CCceEEecC
Q 034040           90 PHIYS-NGHICLGIA  103 (105)
Q Consensus        90 Pnv~~-~G~iCl~iL  103 (105)
                      |||+. +|.||+++|
T Consensus        83 pnV~~~~G~icl~~l   97 (136)
T d1jatb_          83 PCVNPTTGEVQTDFH   97 (136)
T ss_dssp             TTBCTTTCBBCTTSH
T ss_pred             cccccCCCeEECCCC
Confidence            99995 799999976

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=174.05  Aligned_cols=86  Identities=21%  Similarity=0.439  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC
Q 034040           16 ASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS   94 (105)
Q Consensus        16 ~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~   94 (105)
                      |.|||++|+++|+++++.|+++.+ ++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.| .++|||+  
T Consensus         2 A~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t-~~~~~~~--   78 (157)
T d2f4wa1           2 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT-PNGRFKC--   78 (157)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECS-CCSSBCT--
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeC-CCcccCC--
Confidence            789999999999999999999999 899999999999999999999999999999999999999999999 5777666  


Q ss_pred             CCceEEecCC
Q 034040           95 NGHICLGIAS  104 (105)
Q Consensus        95 ~G~iCl~iL~  104 (105)
                      +|++|+.+|+
T Consensus        79 ~g~~~~~~l~   88 (157)
T d2f4wa1          79 NTRLCLSITD   88 (157)
T ss_dssp             TSCBC-----
T ss_pred             CCCeeeeecc
Confidence            4777766653

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.97  E-value=1e-30  Score=174.86  Aligned_cols=83  Identities=25%  Similarity=0.548  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEeecCCccceEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCeEEEecCCCccccccC-C
Q 034040           17 SNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-N   95 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp~i~HPnv~~-~   95 (105)
                      .|||++|+++|.+++..   +.++||+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.| .||||||++ +
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t-~i~HPnI~~~~   77 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN-RILHPNVDERS   77 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS-CCCBTTBCTTT
T ss_pred             chHHHHHHHHHhcCCCc---CCCCCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecC-CCCCCCCccCc
Confidence            58999999999987643   555789999999999999999999999999999999999999999999 799999986 8


Q ss_pred             CceEEecC
Q 034040           96 GHICLGIA  103 (105)
Q Consensus        96 G~iCl~iL  103 (105)
                      |+||+++|
T Consensus        78 G~vcl~il   85 (158)
T d1yf9a1          78 GSVCLDVI   85 (158)
T ss_dssp             CBBCHHHH
T ss_pred             cccccccc
Confidence            99999986

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.7e-30  Score=171.29  Aligned_cols=91  Identities=23%  Similarity=0.487  Sum_probs=80.3

Q ss_pred             cHHHHHHHHHHHHHHhhCCC--CC-eEEee-cCCccceEEEEEc-CCCCCCCCCE-----------EEEEEECCCCCCCC
Q 034040           13 SKIASNRLQKELVEWQVNPP--AG-FKHKV-TDNLQRWIIEVNG-APGTLYANET-----------FELQVDFPEHYPME   76 (105)
Q Consensus        13 s~~~~~Rl~~E~~~l~~~~~--~~-~~~~~-~~~~~~w~~~i~g-p~~tpy~gg~-----------f~~~i~fp~~yP~~   76 (105)
                      |..|.+||+||+++|+++..  .| +.+.. ++|+++|++.|.| |++|||+||.           |+++|.||++||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~   81 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD   81 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhh
Confidence            56789999999999998753  34 44555 7899999999999 8999999886           99999999999999


Q ss_pred             CCeEEEecCCCcccc-ccCCCceEEecCC
Q 034040           77 APQVIFLPPAPLHPH-IYSNGHICLGIAS  104 (105)
Q Consensus        77 pP~v~f~tp~i~HPn-v~~~G~iCl~iL~  104 (105)
                      ||+|+|.| .++||| ++.+|.||+++|.
T Consensus        82 PP~v~f~t-~i~hpn~~~~~G~iCl~iL~  109 (162)
T d1zuoa1          82 PPFVRVVL-PVLSGGYVLGGGALCMELLT  109 (162)
T ss_dssp             CCEEEEEE-SCEESTTBCGGGBBCCGGGS
T ss_pred             cceEEEEE-EeeccccccCCceeeccccc
Confidence            99999999 699998 5779999999984

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.9e-20  Score=120.02  Aligned_cols=86  Identities=20%  Similarity=0.271  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhhCC---CCCeEEee-cCCccceEEEEEcCCCCCCCCCEEEE--EEECCCCCCCCCCeEEEecC----CCc
Q 034040           19 RLQKELVEWQVNP---PAGFKHKV-TDNLQRWIIEVNGAPGTLYANETFEL--QVDFPEHYPMEAPQVIFLPP----APL   88 (105)
Q Consensus        19 Rl~~E~~~l~~~~---~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~yP~~pP~v~f~tp----~i~   88 (105)
                      +..+|+.++.+.-   .++..+.. +|+..+|.+.|.|+.+++|+||.|.+  .|.||++||++||.|.|.++    ..+
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            4456676666643   34555555 77889999999999999999999998  55689999999999988752    268


Q ss_pred             cccccCCCceEEecCC
Q 034040           89 HPHIYSNGHICLGIAS  104 (105)
Q Consensus        89 HPnv~~~G~iCl~iL~  104 (105)
                      ||||+.+|+||+++|+
T Consensus        98 h~~V~~~G~V~lp~L~  113 (141)
T d1s1qa_          98 GKHVDANGKIYLPYLH  113 (141)
T ss_dssp             SSSBCTTCBBCCHHHH
T ss_pred             CCeECCCCCCcchhhc
Confidence            9999999999999873

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.8e-16  Score=104.44  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhhCCC---CCeEEee-cCCccceEEEEEcCCCCCCCCCE---EEEEEECCCCCCCCCCeEEEecC----
Q 034040           17 SNRLQKELVEWQVNPP---AGFKHKV-TDNLQRWIIEVNGAPGTLYANET---FELQVDFPEHYPMEAPQVIFLPP----   85 (105)
Q Consensus        17 ~~Rl~~E~~~l~~~~~---~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~yP~~pP~v~f~tp----   85 (105)
                      .+|+.+|+.++.++-+   +...+.. +|....+.+.+.|.-..+|+|+.   +.+.|.||++||++||.|.|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            4577888888877533   2333333 56677888999998889999995   67888899999999999999863    


Q ss_pred             ------CCccccccCCCceEEecCC
Q 034040           86 ------APLHPHIYSNGHICLGIAS  104 (105)
Q Consensus        86 ------~i~HPnv~~~G~iCl~iL~  104 (105)
                            .++|||||.+|+||+++|+
T Consensus       101 ~~~~~~i~~hp~Vd~~G~V~lp~L~  125 (152)
T d1uzxa_         101 NTISSSLPIQEYIDSNGWIALPILH  125 (152)
T ss_dssp             CC----CGGGGGBCTTSCBCCHHHH
T ss_pred             cCCCcccccCCCCCCCCcEehHHhc
Confidence                  1679999999999999874

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.3e-07  Score=59.19  Aligned_cols=83  Identities=22%  Similarity=0.399  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEee-cCCccceEEEEEcCCCCCCCCC----------EEEEEEECCCCCCCCCCeEEE
Q 034040           14 KIASNRLQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNGAPGTLYANE----------TFELQVDFPEHYPMEAPQVIF   82 (105)
Q Consensus        14 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f   82 (105)
                      ..=..||..|++.|-+-      +.. +++-.+|.-.-.-++||-|.|.          .|.+++.+|..||..||.|..
T Consensus        24 e~W~~RLKEEy~aLI~Y------v~nNK~~dndWF~lesn~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi~l   97 (162)
T d2in1a1          24 ELWVQRLKEEYQSLIRY------VENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV   97 (162)
T ss_dssp             HHHHHHHHHHHHHHHHH------HHHHHHTTCCCEEEEECTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcceec
Confidence            45688999999998551      111 1111223222233555555542          345666779999999999987


Q ss_pred             ecCCCccccccCCCceEEec
Q 034040           83 LPPAPLHPHIYSNGHICLGI  102 (105)
Q Consensus        83 ~tp~i~HPnv~~~G~iCl~i  102 (105)
                      ..-..-..-.|..|+|||++
T Consensus        98 PeLdGKTaKMYRGGkIClt~  117 (162)
T d2in1a1          98 PELDGKTAKMYRGGKICLTD  117 (162)
T ss_dssp             GGGSSSCSSSCGGGBCCCCT
T ss_pred             cccCCchhhhhcCceeeccc
Confidence            64222233467899999975

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0039  Score=37.17  Aligned_cols=66  Identities=20%  Similarity=0.258  Sum_probs=43.0

Q ss_pred             HHHHHHHHhhCCCCCeEEee-cCCccceEEEEEc-CC---CCCCCCCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           20 LQKELVEWQVNPPAGFKHKV-TDNLQRWIIEVNG-AP---GTLYANETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        20 l~~E~~~l~~~~~~~~~~~~-~~~~~~w~~~i~g-p~---~tpy~gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      +..|+..|+.--+..+.... .++...+.+.|.- |.   +.-=......+.+.||++||..+|.+.+.++
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc
Confidence            56789999887666665554 4444444444432 11   1111124678888999999999999988763

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.081  Score=31.97  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhhCCCCCeEEee-cC-----CccceEEEEEcCC-CCCCCCCEEEEEEECCCCCCCCCCeEEEec
Q 034040           18 NRLQKELVEWQVNPPAGFKHKV-TD-----NLQRWIIEVNGAP-GTLYANETFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        18 ~Rl~~E~~~l~~~~~~~~~~~~-~~-----~~~~w~~~i~gp~-~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      .+-..|+..|+.--+.-+.... ..     ......+.+.... +.....-.+.|.+.||.+||..+|.+.+..
T Consensus        13 E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~   86 (137)
T d1ukxa_          13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEec
Confidence            3447788888775444444433 11     1123444444311 223334568999999999999999998876

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.07  Score=32.07  Aligned_cols=26  Identities=23%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             CCEEEEEEECCCCCCCCCCeEEEecC
Q 034040           60 NETFELQVDFPEHYPMEAPQVIFLPP   85 (105)
Q Consensus        60 gg~f~~~i~fp~~yP~~pP~v~f~tp   85 (105)
                      .-...+.+.+|.+||..+|.|.+.++
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~~~   90 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVRSV   90 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             CceEEEEEEecCcCCCcCCceeccCC
Confidence            34688999999999999999988773

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.15  Score=30.67  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             EEEEEEECCCCCCCCCCeEEEec
Q 034040           62 TFELQVDFPEHYPMEAPQVIFLP   84 (105)
Q Consensus        62 ~f~~~i~fp~~yP~~pP~v~f~t   84 (105)
                      ...+.+.+|++||..+|.|.+.+
T Consensus        69 ~i~L~~~lp~~YP~~~P~i~~~~   91 (141)
T d2dawa1          69 KIDLQVTMPHSYPYLALQLFGRS   91 (141)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEeCCCCCCCCCCceeec
Confidence            46788889999999999998876