Citrus Sinensis ID: 034047

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MKCKSYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK
Secondary Structure (PSIPRED)
cccccEEEEEEEEHHHHHcccEEEcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEEEHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHcc
Coil and Loop (DISEMBL)
mkcksyelTFSVIGLVQETSTCALNSIQLLHIVfnpmadeeiadpkkyleeackpkCVKSLIEYEACIKRieaddtgskhctgqyfdylscvdkcvapklftqlk
Flexible Loop (DISEMBL)
MKCKSYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK
Low Complexity Region (SEG)
MKCKSYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK
Disordered region (IsUnstruct)
****SYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLF****
Disordered Region (DISOPRED)
****SYELTFSVIGLVQETSTCALNSIQLLHI********EIADPKKYLEEACKPKCVKSLIEYEACIK**********HCTGQYFDYLSCVDKCVAPKLFTQLK
Disordered Region (DISEMBL)
MKCKSYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK
Disordered Region (DISPRO)
*KCKSYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKCKSYELTFSVIGLVQETSTCALNSIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
P48504	69	Cytochrome b-c1 complex s	N/A	no	0.657	1.0	0.666	9e-23
Q1ZXP3	69	Probable cytochrome b-c1	yes	no	0.571	0.869	0.426	1e-07
Q5M9I5	89	Cytochrome b-c1 complex s	yes	no	0.609	0.719	0.378	2e-05
P07919	91	Cytochrome b-c1 complex s	yes	no	0.609	0.703	0.378	3e-05
P99028	89	Cytochrome b-c1 complex s	yes	no	0.609	0.719	0.378	7e-05
Q8SPH5	91	Cytochrome b-c1 complex s	N/A	no	0.609	0.703	0.378	9e-05
P00126	91	Cytochrome b-c1 complex s	yes	no	0.609	0.703	0.363	0.0002

>sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           M+DEE+ DPK  LE +CKPKCV+ L EY+AC KR+E D++G KHCTGQYFDY  C+DKCV
Sbjct: 1   MSDEEVVDPKATLEVSCKPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCV 60

Query: 97  APKLFTQLK 105
           A KLF  LK
Sbjct: 61  AAKLFDHLK 69

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)

>sp|Q1ZXP3|QCR6_DICDI Probable cytochrome b-c1 complex subunit 6 OS=Dictyostelium discoideum GN=uqcrh PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 46  KKYLEEACKPKCVKSLIEYEACIKRIEADDTGSK-HCTGQYFDYLSCVDKCVAPKLFTQL 104
           K  ++E C   C KS   Y+AC  R+   +   K +C GQ+ +++ C+DKCV PKLF QL
Sbjct: 9   KGPIQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQL 68

Query: 105 K 105
           K
Sbjct: 69  K 69

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5M9I5|QCR6_RAT Cytochrome b-c1 complex subunit 6, mitochondrial OS=Rattus norvegicus GN=Uqcrh PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E+C +R+ +     + CT + FD+L   D CVA K
Sbjct: 24  LVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83

Query: 100 LFTQLK 105
           LF  LK
Sbjct: 84  LFKSLK 89

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Rattus norvegicus (taxid: 10116)

>sp|P07919|QCR6_HUMAN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Homo sapiens GN=UQCRH PE=1 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C +R+ +     + CT + FD+L   D CVA K
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHCVAHK 85

Query: 100 LFTQLK 105
           LF  LK
Sbjct: 86  LFNNLK 91

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Homo sapiens (taxid: 9606)

>sp|P99028|QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochondrial OS=Mus musculus GN=Uqcrh PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C  R+ +     + CT + FD+L   D CVA K
Sbjct: 24  LVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83

Query: 100 LFTQLK 105
           LF  LK
Sbjct: 84  LFKNLK 89

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Mus musculus (taxid: 10090)

>sp|Q8SPH5|QCR6_MACFA Cytochrome b-c1 complex subunit 6, mitochondrial OS=Macaca fascicularis GN=UQCRH PE=3 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C KR+ +     + CT +  D+L   D CVA K
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDKRVSSRSRTEEDCTEELLDFLHARDHCVAYK 85

Query: 100 LFTQLK 105
           LF  LK
Sbjct: 86  LFNNLK 91

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Macaca fascicularis (taxid: 9541)

>sp|P00126|QCR6_BOVIN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Bos taurus GN=UQCRH PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C +R+ +     + CT +  D+L   D CVA K
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 85

Query: 100 LFTQLK 105
           LF  LK
Sbjct: 86  LFNSLK 91

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
224085103	69	predicted protein [Populus trichocarpa]	0.657	1.0	0.797	2e-26
357152900	155	PREDICTED: uncharacterized protein LOC10	0.647	0.438	0.794	6e-26
21554004	69	putative ubiquinol--cytochrome-c reducta	0.657	1.0	0.753	8e-26
15218058	69	Ubiquinol-cytochrome C reductase hinge p	0.657	1.0	0.753	9e-26
388505426	69	unknown [Lotus japonicus]	0.657	1.0	0.782	2e-25
356558587	69	PREDICTED: cytochrome b-c1 complex subun	0.657	1.0	0.782	2e-25
388499608	69	unknown [Medicago truncatula]	0.657	1.0	0.782	3e-25
357445693	154	Cytochrome b-c1 complex subunit [Medicag	0.647	0.441	0.779	4e-25
449445858	69	PREDICTED: cytochrome b-c1 complex subun	0.657	1.0	0.768	5e-25
297844414	69	predicted protein [Arabidopsis lyrata su	0.647	0.985	0.75	5e-25

>gi|224085103|ref|XP_002307493.1| predicted protein [Populus trichocarpa] gi|222856942|gb|EEE94489.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 63/69 (91%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           MADEE  DPKKYLEEACKPKCV+ L+EY+AC+KRI+ D++G KHCTGQYFDY SCVDKCV
Sbjct: 1   MADEEPVDPKKYLEEACKPKCVRPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCV 60

Query: 97  APKLFTQLK 105
           APKLFT+LK
Sbjct: 61  APKLFTKLK 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357152900|ref|XP_003576272.1| PREDICTED: uncharacterized protein LOC100827916 [Brachypodium distachyon]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 60/68 (88%)

Query: 38  ADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVA 97
           ADEE  DPKKYLEE CKP+CVK L EYE C+KR+E+DDTG KHCTGQYFDYLSC+DKCVA
Sbjct: 88  ADEEPVDPKKYLEERCKPQCVKPLYEYERCVKRVESDDTGHKHCTGQYFDYLSCIDKCVA 147

Query: 98  PKLFTQLK 105
           PKLF +LK
Sbjct: 148 PKLFEKLK 155

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554004|gb|AAM63085.1| putative ubiquinol--cytochrome-c reductase [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 63/69 (91%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           MAD+E+ DPKKYLEE+CKPKCVK L+EY+AC+KRI++DD+G KHCTGQYFDY  C+DKCV
Sbjct: 1   MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQSDDSGHKHCTGQYFDYWQCIDKCV 60

Query: 97  APKLFTQLK 105
           APKLF +LK
Sbjct: 61  APKLFAKLK 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218058|ref|NP_172964.1| Ubiquinol-cytochrome C reductase hinge protein [Arabidopsis thaliana] gi|110740918|dbj|BAE98555.1| ubiquinol-cytochrome-c reductase like protein [Arabidopsis thaliana] gi|114050691|gb|ABI49495.1| At1g15120 [Arabidopsis thaliana] gi|227204459|dbj|BAH57081.1| AT1G15120 [Arabidopsis thaliana] gi|332191146|gb|AEE29267.1| Ubiquinol-cytochrome C reductase hinge protein [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 62/69 (89%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           MAD+E+ DPKKYLEE+CKPKCVK L+EY+AC+KRI+ DD+G KHCTGQYFDY  C+DKCV
Sbjct: 1   MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWQCIDKCV 60

Query: 97  APKLFTQLK 105
           APKLF +LK
Sbjct: 61  APKLFAKLK 69

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505426|gb|AFK40779.1| unknown [Lotus japonicus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           MADEE  DPK YLEE+CKPKCVK L+EY+AC+KRI  D+TG KHCTGQYFDY +CVDKCV
Sbjct: 1   MADEEPVDPKGYLEESCKPKCVKPLLEYQACVKRIHGDETGQKHCTGQYFDYWACVDKCV 60

Query: 97  APKLFTQLK 105
           APKLFT+LK
Sbjct: 61  APKLFTKLK 69

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558587|ref|XP_003547586.1| PREDICTED: cytochrome b-c1 complex subunit 6 [Glycine max] gi|255630456|gb|ACU15586.1| unknown [Glycine max]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           MADEE  D K+YLEE+CKPKCVK L+EY+ACIKRI  DD+G KHCTGQYFDY SC+DKCV
Sbjct: 1   MADEEPVDQKRYLEESCKPKCVKPLLEYQACIKRIHGDDSGQKHCTGQYFDYWSCIDKCV 60

Query: 97  APKLFTQLK 105
           APKLFT+LK
Sbjct: 61  APKLFTKLK 69

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499608|gb|AFK37870.1| unknown [Medicago truncatula]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           MADEE  DPKK LEE+CKPKCV+ L+EY+ACIKRI+ DD+G KHCTGQYFDY  CVDKCV
Sbjct: 1   MADEEPVDPKKLLEESCKPKCVRPLLEYQACIKRIQGDDSGQKHCTGQYFDYWYCVDKCV 60

Query: 97  APKLFTQLK 105
           APKLFT+LK
Sbjct: 61  APKLFTKLK 69

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445693|ref|XP_003593124.1| Cytochrome b-c1 complex subunit [Medicago truncatula] gi|355482172|gb|AES63375.1| Cytochrome b-c1 complex subunit [Medicago truncatula]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 60/68 (88%)

Query: 38  ADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVA 97
           ADEE  DPKK LEE+CKPKCV+ L+EY+ACIKRI+ DD+G KHCTGQYFDY  CVDKCVA
Sbjct: 87  ADEEPVDPKKLLEESCKPKCVRPLLEYQACIKRIQGDDSGQKHCTGQYFDYWYCVDKCVA 146

Query: 98  PKLFTQLK 105
           PKLFT+LK
Sbjct: 147 PKLFTKLK 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445858|ref|XP_004140689.1| PREDICTED: cytochrome b-c1 complex subunit 6-like [Cucumis sativus] gi|449528698|ref|XP_004171340.1| PREDICTED: cytochrome b-c1 complex subunit 6-like [Cucumis sativus]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 61/69 (88%)

Query: 37  MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
           MADEE  D K+YLEEACKPKCVK L+EY+AC+KRI+ DD+G KHCTGQYFDY SC+DKCV
Sbjct: 1   MADEEPVDQKRYLEEACKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWSCIDKCV 60

Query: 97  APKLFTQLK 105
           APKL T+LK
Sbjct: 61  APKLLTKLK 69

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844414|ref|XP_002890088.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335930|gb|EFH66347.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 61/68 (89%)

Query: 38  ADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVA 97
           AD+E+ DPKKYLEE+CKPKCVK L+EY+AC+KRI+ DD+G KHCTGQYFDY  C+DKCVA
Sbjct: 2   ADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDYWHCIDKCVA 61

Query: 98  PKLFTQLK 105
           PKLF +LK
Sbjct: 62  PKLFAKLK 69

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2037838	166	AT1G15120 [Arabidopsis thalian	0.657	0.415	0.671	5.9e-25
TAIR|locus:2045730	62	AT2G01090 "AT2G01090" [Arabido	0.580	0.983	0.655	1.5e-21
DICTYBASE|DDB_G0271774	69	uqcrh "ubiquinol-cytochrome-c	0.542	0.826	0.431	1.1e-09
GENEDB_PFALCIPARUM|PF14_0248	88	PF14_0248 "ubiquinol-cytochrom	0.619	0.738	0.384	1.1e-09
UNIPROTKB|Q8ILJ5	88	PF14_0248 "Cytochrome b-c1 com	0.619	0.738	0.384	1.1e-09
RGD|1305987	89	Uqcrh "ubiquinol-cytochrome c	0.638	0.752	0.391	9.7e-09
UNIPROTKB|E2RR27	91	UQCRH "Cytochrome b-c1 complex	0.638	0.736	0.391	1.2e-08
UNIPROTKB|F1NHW5	74	UQCRH "Cytochrome b-c1 complex	0.638	0.905	0.391	1.6e-08
UNIPROTKB|P07919	91	UQCRH "Cytochrome b-c1 complex	0.638	0.736	0.391	1.6e-08
UNIPROTKB|F1S3W0	91	UQCRH "Cytochrome b-c1 complex	0.638	0.736	0.376	1.6e-08

TAIR|locus:2037838 AT1G15120 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 47/70 (67%), Positives = 58/70 (82%)

Query:    26 SIQLLHIVFNPMADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQY 85
             S+    + FN MAD+E+ DPKKYLEE+CKPKCVK L+EY+AC+KRI+ DD+G KHCTGQY
Sbjct:    58 SVFSFQLTFN-MADDEVVDPKKYLEESCKPKCVKPLLEYQACVKRIQGDDSGHKHCTGQY 116

Query:    86 FDYLSCVDKC 95
             FDY  C+DKC
Sbjct:   117 FDYWQCIDKC 126

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2045730 AT2G01090 "AT2G01090" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 40/61 (65%), Positives = 52/61 (85%)

Query:    37 MADEEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
             M +E++ D K+Y EE+CKPKCVK L+EY+AC+KRI+ D++G KHCTGQYFDY  CVDKCV
Sbjct:     1 MPEEDVVDQKRYFEESCKPKCVKPLLEYQACVKRIQDDESGHKHCTGQYFDYWHCVDKCV 60

Query:    97 A 97
             +
Sbjct:    61 S 61

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

DICTYBASE|DDB_G0271774 uqcrh "ubiquinol-cytochrome-c reductase hinge protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query:    49 LEEACKPKCVKSLIEYEACIKRIEADDTGSK-HCTGQYFDYLSCVDKCVAPKLFTQLK 105
             ++E C   C KS   Y+AC  R+   +   K +C GQ+ +++ C+DKCV PKLF QLK
Sbjct:    12 IQEGCASGCEKSWSAYQACSGRVAKLEHDEKANCLGQFLEHVQCIDKCVGPKLFAQLK 69

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF14_0248 PF14_0248 "ubiquinol-cytochrome c reductase hinge protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query:    40 EEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
             +   DP+  LE+ C  KCV+ + EY+ C+ R+ A      +C GQY +   C+D CVA  
Sbjct:    23 DRTVDPRIELEKKCAVKCVRPVNEYQNCVSRVRARTDNKGNCLGQYEELYICIDHCVAKD 82

Query:   100 LFTQL 104
             LF  L
Sbjct:    83 LFNYL 87

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

UNIPROTKB|Q8ILJ5 PF14_0248 "Cytochrome b-c1 complex subunit 6" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query:    40 EEIADPKKYLEEACKPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
             +   DP+  LE+ C  KCV+ + EY+ C+ R+ A      +C GQY +   C+D CVA  
Sbjct:    23 DRTVDPRIELEKKCAVKCVRPVNEYQNCVSRVRARTDNKGNCLGQYEELYICIDHCVAKD 82

Query:   100 LFTQL 104
             LF  L
Sbjct:    83 LFNYL 87

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

RGD|1305987 Uqcrh "ubiquinol-cytochrome c reductase hinge protein" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:    39 DEEIADPKKYLEEACKP--KCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
             +EE+ DP   + E C+   KCVK+    E+C +R+ +     + CT + FD+L   D CV
Sbjct:    21 EEELVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARDHCV 80

Query:    97 APKLFTQLK 105
             A KLF  LK
Sbjct:    81 AHKLFKSLK 89

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IC

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|E2RR27 UQCRH "Cytochrome b-c1 complex subunit 6" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query:    39 DEEIADPKKYLEEACKP--KCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
             +EE+ DP   + E C+   KCVK+    E C +R+ +     + CT + FD+L   D CV
Sbjct:    23 EEELVDPLTTVREQCEQLEKCVKARERLELCDQRVSSRSQTEEDCTEELFDFLHARDHCV 82

Query:    97 APKLFTQLK 105
             A KLF  LK
Sbjct:    83 AHKLFNSLK 91

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

UNIPROTKB|F1NHW5 UQCRH "Cytochrome b-c1 complex subunit 6" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query:    39 DEEIADPKKYLEEACKP--KCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
             +EE+ DP   + E C+   KCVK+    E C  R+ +     + CT + FD+L   D CV
Sbjct:     6 EEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCV 65

Query:    97 APKLFTQLK 105
             A KLF +LK
Sbjct:    66 AHKLFNKLK 74

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/69 (39%), Positives = 38/69 (55%)

Query:    39 DEEIADPKKYLEEACKP--KCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
             +EE+ DP   + E C+   KCVK+    E C +R+ +     + CT + FD+L   D CV
Sbjct:    23 EEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHCV 82

Query:    97 APKLFTQLK 105
             A KLF  LK
Sbjct:    83 AHKLFNNLK 91

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006119 "oxidative phosphorylation" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1S3W0 UQCRH "Cytochrome b-c1 complex subunit 6" [Sus scrofa (taxid:9823)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:    39 DEEIADPKKYLEEACKP--KCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCV 96
             +EE+ DP   + E C+   KC+K+    E C +R+ +     + CT + FD+L   D CV
Sbjct:    23 EEELVDPLTTVREQCEQIEKCIKARERLELCDQRVSSRSQTEEDCTEELFDFLHARDHCV 82

Query:    97 APKLFTQLK 105
             A KLF  LK
Sbjct:    83 AHKLFNSLK 91

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V0272 hypothetical protein (69 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
pfam02320	65	pfam02320, UCR_hinge, Ubiquinol-cytochrome C reduc	1e-22

>gnl|CDD|190277 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase hinge protein

 Score = 82.7 bits (205), Expect = 1e-22
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 44  DPKKYLEEAC--KPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLF 101
           DPK  L E C  K KCVK+  EY+ C++R+ +  +  + CT + FDYL C+D CVAPKLF
Sbjct: 2   DPKDTLREECKNKEKCVKAKHEYQECVERVNSRSSTKEDCTEELFDYLHCLDHCVAPKLF 61

Query: 102 TQLK 105
            +LK
Sbjct: 62  NKLK 65

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PF02320	65	UCR_hinge: Ubiquinol-cytochrome C reductase hinge	100.0
KOG4763	77	consensus Ubiquinol-cytochrome c reductase hinge p	99.96
PF05254	68	UPF0203: Uncharacterised protein family (UPF0203);	93.04
KOG3481	87	consensus Uncharacterized conserved protein [Funct	91.46
PLN03079	91	Uncharacterized protein At4g33100; Provisional	90.77

>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []

Probab=100.00  E-value=8.5e-34  Score=185.63  Aligned_cols=63  Identities=46%  Similarity=1.012  Sum_probs=57.2

Q ss_pred             CChhHHHHHHh--HhhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047           43 ADPKKYLEEAC--KPKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK  105 (105)
Q Consensus        43 vDP~~~LrEeC--~~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK  105 (105)
                      |||++.||++|  +++|++++++|++|++||+++++++|||+||||||+||+|||||||||++||
T Consensus         1 VDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCvD~CvapklF~~LK   65 (65)
T PF02320_consen    1 VDPKDALREECKETPKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCVDHCVAPKLFKKLK   65 (65)
T ss_dssp             --HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHHHHHHHHHHGGC--
T ss_pred             CCchHHHHHHhccchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence            79999999999  5999999999999999999999999999999999999999999999999998

The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....

>KOG4763 consensus Ubiquinol-cytochrome c reductase hinge protein [Energy production and conversion]

Probab=99.96  E-value=2.1e-30  Score=174.39  Aligned_cols=70  Identities=53%  Similarity=1.138  Sum_probs=67.7

Q ss_pred             CCCCcccCChhHHHHHHhH--hhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047           36 PMADEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK  105 (105)
Q Consensus        36 ~m~EEE~vDP~~~LrEeC~--~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK  105 (105)
                      -|++|..+||+..+||.|+  ++|++....|++|++||+++++|++||+|||||||||+|||||||||++||
T Consensus         6 ee~~E~vvDplt~~rE~C~~~~kcvK~~~~l~~C~~rv~s~s~tee~Ct~e~fDy~h~~DhCva~KlFa~LK   77 (77)
T KOG4763|consen    6 EEPEELVVDPLTYVRESCKQLPKCVKPLLELQACVKRVQSRSSTEEHCTGEYFDYWHCLDHCVAPKLFANLK   77 (77)
T ss_pred             hcchhhhccHHHHHHHHHHhhHHHhhHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            5778888899999999999  999999999999999999999999999999999999999999999999998

>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins

Probab=93.04  E-value=0.13  Score=33.89  Aligned_cols=41  Identities=24%  Similarity=0.673  Sum_probs=32.7

Q ss_pred             hhchhhHHHHHHHHhhhc-----cCCCCCCCchhhhhhhhhhhhhc
Q 034047           55 PKCVKSLIEYEACIKRIE-----ADDTGSKHCTGQYFDYLSCVDKC   95 (105)
Q Consensus        55 ~~C~~~~~~y~eC~eRV~-----s~~~~~E~C~eE~fDl~hCvD~C   95 (105)
                      |.|.+++..|+.|-.+==     ++......|.++|-+|..||..=
T Consensus         7 ~eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~a   52 (68)
T PF05254_consen    7 PECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKA   52 (68)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHH
Confidence            789999999999988743     23334468999999999998653

In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].

>KOG3481 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.46  E-value=0.26  Score=34.45  Aligned_cols=42  Identities=24%  Similarity=0.646  Sum_probs=34.3

Q ss_pred             hhchhhHHHHHHHHhh-----hccCCCCCCCchhhhhhhhhhhhhcc
Q 034047           55 PKCVKSLIEYEACIKR-----IEADDTGSKHCTGQYFDYLSCVDKCV   96 (105)
Q Consensus        55 ~~C~~~~~~y~eC~eR-----V~s~~~~~E~C~eE~fDl~hCvD~Cv   96 (105)
                      +.|.+++..|+.|-.+     +.++....+.|+.++-.|..||..=-
T Consensus        11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal   57 (87)
T KOG3481|consen   11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKAL   57 (87)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHH
Confidence            6799999999999765     44455677899999999999987644

>PLN03079 Uncharacterized protein At4g33100; Provisional

Probab=90.77  E-value=0.31  Score=34.27  Aligned_cols=41  Identities=17%  Similarity=0.554  Sum_probs=32.0

Q ss_pred             hhchhhHHHHHHHHhhhcc-----CCCCCCCchhhhhhhhhhhhhc
Q 034047           55 PKCVKSLIEYEACIKRIEA-----DDTGSKHCTGQYFDYLSCVDKC   95 (105)
Q Consensus        55 ~~C~~~~~~y~eC~eRV~s-----~~~~~E~C~eE~fDl~hCvD~C   95 (105)
                      +.|..++..|+.|=.|==+     +...+..|.+++-.|..||..=
T Consensus        16 ~eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~a   61 (91)
T PLN03079         16 SPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEH   61 (91)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHH
Confidence            4599999999999887432     3334568999999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
3cwb_H	77	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		2e-06
1bcc_H	78	Cytochrome Bc1 Complex From Chicken Length = 78		4e-06
1bgy_H	78	Cytochrome Bc1 Complex From Bovine Length = 78		2e-05
1qcr_H	60	Crystal Structure Of Bovine Mitochondrial Cytochrom		5e-04

>pdb|3CWB|H Chain H, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 77

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C  R+ +     + CT + FD+L   D CVA K
Sbjct: 12  LVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHK 71
Query: 100 LFTQLK 105
           LF +LK
Sbjct: 72  LFNKLK 77

>pdb|1BCC|H Chain H, Cytochrome Bc1 Complex From Chicken Length = 78

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C +R+ +     + CT + FD+L   D CVA K
Sbjct: 13  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHK 72
Query: 100 LFTQLK 105
           LF  LK
Sbjct: 73  LFNSLK 78

>pdb|1BGY|H Chain H, Cytochrome Bc1 Complex From Bovine Length = 78

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C +R+ +     + CT +  D+L   D CVA K
Sbjct: 13  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 72
Query: 100 LFTQLK 105
           LF  LK
Sbjct: 73  LFNSLK 78

>pdb|1QCR|H Chain H, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 60

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 55  PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQL 104
            KCVK+    E C +R+ +     + CT +  D+L   D CVA KLF  L
Sbjct: 11  EKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSL 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
1pp9_H	78	Ubiquinol-cytochrome C reductase complex 11 kDa P;	4e-24
3tgu_H	77	Mitochondrial ubiquinol-cytochrome C reductase 11	8e-24
3cx5_F	146	Cytochrome B-C1 complex subunit 6; complex III, el	3e-11

>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ... Length = 78

 Score = 86.5 bits (214), Expect = 4e-24
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 38  ADEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKC 95
            +EE+ DP   + E C+   KCVK+    E C +R+ +     + CT +  D+L   D C
Sbjct: 9   EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHC 68

Query: 96  VAPKLFTQLK 105
           VA KLF  LK
Sbjct: 69  VAHKLFNSLK 78

>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H* Length = 77

 Score = 85.7 bits (212), Expect = 8e-24
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 38  ADEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKC 95
            +EE+ DP   + E C+   KCVK+    E C  R+ +     + CT + FD+L   D C
Sbjct: 8   EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHC 67

Query: 96  VAPKLFTQLK 105
           VA KLF +LK
Sbjct: 68  VAHKLFNKLK 77

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146

 Score = 55.3 bits (132), Expect = 3e-11
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 39  DEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIE--------ADDTGSKHCTGQYFDY 88
           +EE+ D  + L E  K   +    +  YE C +R++        AD    + C  ++F  
Sbjct: 70  EEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHL 129

Query: 89  LSCVDKCVAPKLFTQLK 105
              +D   AP+LF +LK
Sbjct: 130 QHYLDTATAPRLFDKLK 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3tgu_H	77	Mitochondrial ubiquinol-cytochrome C reductase 11	100.0
1pp9_H	78	Ubiquinol-cytochrome C reductase complex 11 kDa P;	100.0
3cx5_F	146	Cytochrome B-C1 complex subunit 6; complex III, el	99.97

>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*

Probab=100.00  E-value=2.4e-35  Score=197.76  Aligned_cols=69  Identities=39%  Similarity=0.746  Sum_probs=65.4

Q ss_pred             CCCcccCChhHHHHHHhH--hhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047           37 MADEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK  105 (105)
Q Consensus        37 m~EEE~vDP~~~LrEeC~--~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK  105 (105)
                      -+|||+|||++.||++|+  ++|++++++|++|++||++++++++||+||||||+||+|||||||||++||
T Consensus         7 eeEeE~vDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCvD~CvapkLF~~LK   77 (77)
T 3tgu_H            7 EEEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK   77 (77)
T ss_dssp             --CCCCCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             cccccccCHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcHHHHHhcC
Confidence            457789999999999998  799999999999999999999999999999999999999999999999998

>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...

Probab=100.00  E-value=3.3e-35  Score=197.48  Aligned_cols=68  Identities=38%  Similarity=0.739  Sum_probs=63.2

Q ss_pred             CCcccCChhHHHHHHhH--hhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047           38 ADEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK  105 (105)
Q Consensus        38 ~EEE~vDP~~~LrEeC~--~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK  105 (105)
                      +|||+|||++.||++|+  ++|++++++|++|++||++++++++||+|||||||||+|||||||||++||
T Consensus         9 eeEE~vDp~~~l~e~C~~~~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCvD~CvapkLf~~LK   78 (78)
T 1pp9_H            9 EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK   78 (78)
T ss_dssp             ----CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred             hcccccChHHHHHHHHhcchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence            35789999999999998  899999999999999999999999999999999999999999999999998

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*

Probab=99.97  E-value=1.2e-31  Score=197.95  Aligned_cols=67  Identities=28%  Similarity=0.568  Sum_probs=60.9

Q ss_pred             CcccCChhHHHHHHhH--hhchhhHHHHHHHHhhhccCC--------CCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047           39 DEEIADPKKYLEEACK--PKCVKSLIEYEACIKRIEADD--------TGSKHCTGQYFDYLSCVDKCVAPKLFTQLK  105 (105)
Q Consensus        39 EEE~vDP~~~LrEeC~--~~C~~~~~~y~eC~eRV~s~~--------~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK  105 (105)
                      |||+|||++.||++|+  ++|++++++|++|++||++++        ++++||++|||||+||+|||||||||++||
T Consensus        70 EEE~vDPk~~LrEeC~~s~~C~~~~~~ydeCveRV~s~~e~~G~~~~~~~EdC~eE~Fdl~hCvD~CvAPKLF~~LK  146 (146)
T 3cx5_F           70 EEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK  146 (146)
T ss_dssp             ---CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             cccccChHHHHHHHhcCCchhHHHHHHHHHHHHHHHccccccccccCCCCcccHHHHHHHHhhHhhccCHHHHHhcC
Confidence            4579999999999999  899999999999999999854        268999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1ppjh_	66	f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrom	9e-22
d3cx5f1	74	f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cyt	2e-17

>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 66

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (195), Expect = 9e-22
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPK 99
           + DP   + E C+   KCVK+    E C +R+ +     + CT +  D+L   D CVA K
Sbjct: 1   LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 60

Query: 100 LFTQLK 105
           LF  LK
Sbjct: 61  LFNSLK 66

>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.4 bits (167), Expect = 2e-17
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 42  IADPKKYLEEACK--PKCVKSLIEYEACIKRIEA--------DDTGSKHCTGQYFDYLSC 91
           + D  + L E  K   +    +  YE C +R++         D    + C  ++F     
Sbjct: 1   VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHY 60

Query: 92  VDKCVAPKLFTQLK 105
           +D   AP+LF +LK
Sbjct: 61  LDTATAPRLFDKLK 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1ppjh_	66	Non-heme 11 kDa protein of cytochrome bc1 complex	100.0
d3cx5f1	74	Non-heme 11 kDa protein of cytochrome bc1 complex	99.97

>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-34  Score=187.43  Aligned_cols=64  Identities=38%  Similarity=0.734  Sum_probs=62.5

Q ss_pred             cCChhHHHHHHhH--hhchhhHHHHHHHHhhhccCCCCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047           42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFTQLK  105 (105)
Q Consensus        42 ~vDP~~~LrEeC~--~~C~~~~~~y~eC~eRV~s~~~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK  105 (105)
                      +|||++.||++|+  ++|++++++|++|++||++++.++|||+||||||+||+|||||||||++||
T Consensus         1 lVDp~~~lre~C~~~~~C~~~~~~~~eC~eRV~~~~~~~E~C~eE~fd~~hc~D~CvapkLF~~LK   66 (66)
T d1ppjh_           1 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK   66 (66)
T ss_dssp             CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred             CCCcHHHHHHHHhccHhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhcCHHHHHhcC
Confidence            5899999999997  899999999999999999999999999999999999999999999999998

>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.2e-33  Score=182.78  Aligned_cols=64  Identities=27%  Similarity=0.543  Sum_probs=59.8

Q ss_pred             cCChhHHHHHHhH--hhchhhHHHHHHHHhhhccCC--------CCCCCchhhhhhhhhhhhhcchhHHHhhhC
Q 034047           42 IADPKKYLEEACK--PKCVKSLIEYEACIKRIEADD--------TGSKHCTGQYFDYLSCVDKCVAPKLFTQLK  105 (105)
Q Consensus        42 ~vDP~~~LrEeC~--~~C~~~~~~y~eC~eRV~s~~--------~~~E~C~eE~fDl~hCvD~CvAPkLF~~LK  105 (105)
                      +|||++.|||+|+  ++|++++++|++|++||++++        +++|+|+||||||+||+|+|||||||++||
T Consensus         1 lVDpl~~lre~C~~~~~C~~~~~~y~eC~eRV~s~~e~~~~~~~~~~E~C~eE~fdl~hcvD~CvApkLF~~LK   74 (74)
T d3cx5f1           1 VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK   74 (74)
T ss_dssp             CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCChHHHHHHHHhccHhhHHHHHHHHHHHHHHHhcccCCCcCCCccccchHHHHHHHHHHHHHhccHHHHHhcC
Confidence            5899999999998  799999999999999999864        347999999999999999999999999998