Citrus Sinensis ID: 034101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MAVAAAAYAGKYGIRAWQafkarpptarmrkfyeggfqpVMTRREAALILgvrestptekvkEAHRRVMVanhpdaggshyLASKINEAKDIMLrrtkgsnsaf
Flexible Loop (DISEMBL)
MAVAAAAYagkygirawqaFKARPPTARMRKfyeggfqpvMTRREAALIlgvrestptekvkeahRRVMVAnhpdaggshylaSKINEAKDIMLRRtkgsnsaf
Low Complexity Region (SEG)
MavaaaayaGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Disordered region (IsUnstruct)
****AAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGV****************************************************
Disordered Region (DISOPRED)
MAVAAAAYAGKYGIRA****************************EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDI************
Disordered Region (DISEMBL)
********AGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Disordered Region (DISPRO)
MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q8RV04	112	Mitochondrial import inne	yes	no	1.0	0.928	0.788	1e-43
Q9SF33	112	Mitochondrial import inne	no	no	0.903	0.839	0.829	2e-39
Q9LYY2	112	Mitochondrial import inne	no	no	0.903	0.839	0.797	3e-38
Q3ZBN8	116	Mitochondrial import inne	yes	no	0.894	0.801	0.495	5e-23
Q5RF34	116	Mitochondrial import inne	yes	no	0.894	0.801	0.485	3e-22
Q96DA6	116	Mitochondrial import inne	yes	no	0.894	0.801	0.485	3e-22
Q5RCP4	150	DnaJ homolog subfamily C	no	no	0.942	0.653	0.476	2e-21
Q9Y5T4	150	DnaJ homolog subfamily C	no	no	0.942	0.653	0.476	3e-21
Q78YY6	149	DnaJ homolog subfamily C	yes	no	0.884	0.617	0.485	9e-21
Q6PBT7	115	Mitochondrial import inne	no	no	0.884	0.8	0.485	4e-20

>sp|Q8RV04|TI141_ARATH Mitochondrial import inner membrane translocase subunit TIM14-1 OS=Arabidopsis thaliana GN=TIM14-1 PE=3 SV=1

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 93/104 (89%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           +AVAA A AG+YGI+AWQAFKARPP  +++KFYEGGFQP MT+REAALILGVRES   EK
Sbjct: 9   VAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAHR+VMVANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct: 69  VKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF33|TI142_ARATH Mitochondrial import inner membrane translocase subunit TIM14-2 OS=Arabidopsis thaliana GN=TIM14-2 PE=3 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 80/94 (85%)

Query: 11  KYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMV 70
           KYGI AWQAFK RP   RMRKFYEGGFQ  M RREAALILGVRES   EKVKEAHRRVMV
Sbjct: 19  KYGIEAWQAFKLRPVRPRMRKFYEGGFQATMNRREAALILGVRESVAAEKVKEAHRRVMV 78

Query: 71  ANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           ANHPDAGGSHYLASKINEAKD+ML +TK S SAF
Sbjct: 79  ANHPDAGGSHYLASKINEAKDMMLGKTKNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYY2|TI143_ARATH Mitochondrial import inner membrane translocase subunit TIM14-3 OS=Arabidopsis thaliana GN=TIM14-3 PE=3 SV=1

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 81/94 (86%)

Query: 11  KYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMV 70
           +YGI AWQAFKARP   RMR+FYEGGFQ  MTRREAALILGVRES   +KVKEAHRRVMV
Sbjct: 19  RYGILAWQAFKARPRVPRMRRFYEGGFQSSMTRREAALILGVRESVVADKVKEAHRRVMV 78

Query: 71  ANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           ANHPDAGGSHYLASKINEAKD+ML ++  S SAF
Sbjct: 79  ANHPDAGGSHYLASKINEAKDMMLGKSNNSGSAF 112

Component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ZBN8|TIM14_BOVIN Mitochondrial import inner membrane translocase subunit TIM14 OS=Bos taurus GN=DNAJC19 PE=3 SV=3

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 71/101 (70%), Gaps = 8/101 (7%)

Query: 1   MAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILGV 52
           + +AAA +AG+Y ++A         Q F++ P TA    +Y GGF+P MT+REAALILGV
Sbjct: 10  LTIAAAGFAGRYALQAMKHMEPQVKQVFQSLPKTAFSGGYYRGGFEPKMTKREAALILGV 69

Query: 53  RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 93
             +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++
Sbjct: 70  SPTANKAKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLL 110

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Bos taurus (taxid: 9913)

>sp|Q5RF34|TIM14_PONAB Mitochondrial import inner membrane translocase subunit TIM14 OS=Pongo abelii GN=DNAJC19 PE=3 SV=3

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 8/101 (7%)

Query: 1   MAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILGV 52
           + +AAA +AG+Y ++A         Q F++ P +A    +Y GGF+P MT+REAALILGV
Sbjct: 10  LTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGV 69

Query: 53  RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 93
             +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++
Sbjct: 70  SPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLL 110

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Pongo abelii (taxid: 9601)

>sp|Q96DA6|TIM14_HUMAN Mitochondrial import inner membrane translocase subunit TIM14 OS=Homo sapiens GN=DNAJC19 PE=1 SV=3

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 8/101 (7%)

Query: 1   MAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILGV 52
           + +AAA +AG+Y ++A         Q F++ P +A    +Y GGF+P MT+REAALILGV
Sbjct: 10  LTIAAAGFAGRYVLQAMKHMEPQVKQVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGV 69

Query: 53  RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 93
             +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++
Sbjct: 70  SPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLL 110

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Homo sapiens (taxid: 9606)

>sp|Q5RCP4|DJC15_PONAB DnaJ homolog subfamily C member 15 OS=Pongo abelii GN=DNAJC15 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 7/105 (6%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRREAALILGVR 53
           + VAA A+AG+Y  R W+  +        +  T  +  +Y+GGF+  M+RREA LILGV 
Sbjct: 45  LGVAAFAFAGRYAFRIWKPLEQVITETAKKISTPSLSSYYKGGFEKKMSRREAGLILGVS 104

Query: 54  ESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98
            S    K++ AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct: 105 PSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

Pongo abelii (taxid: 9601)

>sp|Q9Y5T4|DJC15_HUMAN DnaJ homolog subfamily C member 15 OS=Homo sapiens GN=DNAJC15 PE=1 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 7/105 (6%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRREAALILGVR 53
           + VAA A+AG+Y  R W+  +        +  T     +Y+GGF+  M+RREA LILGV 
Sbjct: 45  LGVAALAFAGRYAFRIWKPLEQVITETAKKISTPSFSSYYKGGFEQKMSRREAGLILGVS 104

Query: 54  ESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98
            S    K++ AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct: 105 PSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

Homo sapiens (taxid: 9606)

>sp|Q78YY6|DJC15_MOUSE DnaJ homolog subfamily C member 15 OS=Mus musculus GN=Dnajc15 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 9/101 (8%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRK--------FYEGGFQPVMTRREAALILGV 52
           + VAA A+AG+Y  + W+  + +  TA  RK        +Y+GGF+  M++REA+LILGV
Sbjct: 43  LGVAAVAFAGRYAFQIWKPLE-QVITATARKISSPSFSSYYKGGFEQKMSKREASLILGV 101

Query: 53  RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 93
             S    K++ AH+R+M+ NHPD GGS YLASKINEAKD++
Sbjct: 102 SPSAGKAKIRTAHKRIMILNHPDKGGSPYLASKINEAKDLL 142

Mus musculus (taxid: 10090)

>sp|Q6PBT7|TIM14_DANRE Mitochondrial import inner membrane translocase subunit TIM14 OS=Danio rerio GN=dnajc19 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 9/101 (8%)

Query: 1   MAVAAAAYAGKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILGV 52
           + +AAA + G+Y +RA         QA +A   +A    +Y GGF P M RREA+LILGV
Sbjct: 10  LTLAAAGFTGRYAVRAMKHMEPQVKQALEA-SKSAFGSGYYRGGFDPKMNRREASLILGV 68

Query: 53  RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 93
             +    K++EAHR++M+ NHPD GGS YLA+KINEAKD++
Sbjct: 69  SPTANKTKIREAHRKLMILNHPDRGGSPYLAAKINEAKDLL 109

Probable component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. May act as a co-chaperone that stimulate the ATP-dependent activity.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
224069344	112	predicted protein [Populus trichocarpa]	1.0	0.928	0.884	5e-47
18403957	112	chaperone DnaJ-domain containing protein	1.0	0.928	0.788	5e-42
297823385	112	DNAJ heat shock N-terminal domain-contai	1.0	0.928	0.759	3e-41
242052047	112	hypothetical protein SORBIDRAFT_03g00540	1.0	0.928	0.778	6e-41
168040967	112	predicted protein [Physcomitrella patens	1.0	0.928	0.798	9e-41
195639528	112	mitochondrial import inner membrane tran	1.0	0.928	0.769	1e-40
414876263	112	TPA: import inner membrane translocase s	1.0	0.928	0.759	2e-40
239985483	112	mitochondrial import inner membrane tran	1.0	0.928	0.759	2e-40
225439896	110	PREDICTED: mitochondrial import inner me	0.884	0.836	0.840	3e-40
297741562	129	unnamed protein product [Vitis vinifera]	0.884	0.713	0.840	3e-40

>gi|224069344|ref|XP_002326335.1| predicted protein [Populus trichocarpa] gi|222833528|gb|EEE72005.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/104 (88%), Positives = 97/104 (93%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           MAVAA AYAG+YGI+AWQAFKARPPTARMRKFYEGGFQ VMTRREAALILGVREST  +K
Sbjct: 9   MAVAATAYAGRYGIQAWQAFKARPPTARMRKFYEGGFQSVMTRREAALILGVRESTAADK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAHRRVMVANHPDAGGSHYLASKINEAKDI+L +TKG  SAF
Sbjct: 69  VKEAHRRVMVANHPDAGGSHYLASKINEAKDILLGKTKGGGSAF 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403957|ref|NP_565824.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|75330641|sp|Q8RV04.1|TI141_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM14-1; AltName: Full=Chaperone DnaJ-domain containing protein 1 gi|20197532|gb|AAM15117.1| expressed protein [Arabidopsis thaliana] gi|20197993|gb|AAM15345.1| expressed protein [Arabidopsis thaliana] gi|21536803|gb|AAM61135.1| DNAJ protein-like [Arabidopsis thaliana] gi|110737575|dbj|BAF00729.1| hypothetical protein [Arabidopsis thaliana] gi|114050699|gb|ABI49499.1| At2g35795 [Arabidopsis thaliana] gi|330254068|gb|AEC09162.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 93/104 (89%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           +AVAA A AG+YGI+AWQAFKARPP  +++KFYEGGFQP MT+REAALILGVRES   EK
Sbjct: 9   VAVAATALAGRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAHR+VMVANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct: 69  VKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823385|ref|XP_002879575.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325414|gb|EFH55834.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 93/104 (89%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           +AVAA A AG+YGI+AWQAFKARPP  +++KFY+GGFQP MT+REAALILG+R+S   EK
Sbjct: 9   VAVAATALAGRYGIQAWQAFKARPPRPKIKKFYDGGFQPTMTKREAALILGIRQSVAAEK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAHR+VMVANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct: 69  VKEAHRKVMVANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052047|ref|XP_002455169.1| hypothetical protein SORBIDRAFT_03g005400 [Sorghum bicolor] gi|241927144|gb|EES00289.1| hypothetical protein SORBIDRAFT_03g005400 [Sorghum bicolor]

 Score =  171 bits (432), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 91/104 (87%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           +AVAA A AG+YGI+AWQA+KARP   RMRKFYEGGFQP+M RREAALILGVRE+   EK
Sbjct: 9   LAVAATALAGRYGIQAWQAYKARPIVPRMRKFYEGGFQPMMNRREAALILGVRETANAEK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAH+RVMVANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 69  VKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168040967|ref|XP_001772964.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675697|gb|EDQ62189.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 91/104 (87%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           ++VAAAA AGKY I AWQAFKARP TARMRKFYEGGFQPVMTRREAALILGVRES   +K
Sbjct: 9   LSVAAAAMAGKYSIEAWQAFKARPATARMRKFYEGGFQPVMTRREAALILGVRESAAQDK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAHRRVM ANHPDAGGS ++ASKINEAKD +L + +GS SAF
Sbjct: 69  VKEAHRRVMQANHPDAGGSDFIASKINEAKDHLLGQKRGSGSAF 112

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195639528|gb|ACG39232.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/104 (76%), Positives = 90/104 (86%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           +AVAA A AG+YG++AWQA+KARP   RMRKFYEGGFQP M RREAALILGVRE+   EK
Sbjct: 9   LAVAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRETANAEK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAH+RVMVANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 69  VKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414876263|tpg|DAA53394.1| TPA: import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 90/104 (86%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           +A+AA A AG+YG++AWQA+KARP   RMRKFYEGGFQP M RREAALILGVRE+   EK
Sbjct: 9   LAIAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRETANAEK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAH+RVMVANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 69  VKEAHKRVMVANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239985483|ref|NP_001146932.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays] gi|195605332|gb|ACG24496.1| mitochondrial import inner membrane translocase subunit TIM14 [Zea mays]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/104 (75%), Positives = 90/104 (86%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEK 60
           +AVAA A AG+YG++AWQA+KARP   RMRKFYEGGFQP M RREAALILGVRE+   EK
Sbjct: 9   LAVAATALAGRYGVQAWQAYKARPIVPRMRKFYEGGFQPTMNRREAALILGVRETANAEK 68

Query: 61  VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           VKEAH+RVM+ANHPDAGGSHYLASKINEAKD++  +TKG  SAF
Sbjct: 69  VKEAHKRVMIANHPDAGGSHYLASKINEAKDVLSGKTKGGGSAF 112

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439896|ref|XP_002279532.1| PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-like [Vitis vinifera]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 88/94 (93%), Gaps = 2/94 (2%)

Query: 11  KYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMV 70
           +YGI+AWQAFKARPPT  +RKFYEGGFQP MTRREAALILG+RESTP +KVKEAHR+VMV
Sbjct: 19  RYGIQAWQAFKARPPT--LRKFYEGGFQPTMTRREAALILGIRESTPADKVKEAHRKVMV 76

Query: 71  ANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           ANHPDAGGSHYLASKINEAKD+ML +T+GS SAF
Sbjct: 77  ANHPDAGGSHYLASKINEAKDMMLGKTRGSESAF 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741562|emb|CBI32694.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 88/94 (93%), Gaps = 2/94 (2%)

Query: 11  KYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMV 70
           +YGI+AWQAFKARPPT  +RKFYEGGFQP MTRREAALILG+RESTP +KVKEAHR+VMV
Sbjct: 38  RYGIQAWQAFKARPPT--LRKFYEGGFQPTMTRREAALILGIRESTPADKVKEAHRKVMV 95

Query: 71  ANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
           ANHPDAGGSHYLASKINEAKD+ML +T+GS SAF
Sbjct: 96  ANHPDAGGSHYLASKINEAKDMMLGKTRGSESAF 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2828254	112	AT2G35795 [Arabidopsis thalian	0.913	0.848	0.8	2.6e-38
TAIR|locus:2075004	112	AT3G09700 "AT3G09700" [Arabido	0.913	0.848	0.831	1.5e-37
TAIR|locus:2143488	112	AT5G03030 "AT5G03030" [Arabido	0.913	0.848	0.8	2.7e-36
UNIPROTKB|Q3ZBN8	116	DNAJC19 "Mitochondrial import	0.778	0.698	0.543	7.2e-20
UNIPROTKB|Q96DA6	116	DNAJC19 "Mitochondrial import	0.778	0.698	0.530	2.5e-19
UNIPROTKB|F1SGA9	116	DNAJC19 "Uncharacterized prote	0.778	0.698	0.530	2.5e-19
ZFIN|ZDB-GENE-040801-216	149	dnajc15 "DnaJ (Hsp40) homolog,	0.807	0.563	0.494	6.5e-19
UNIPROTKB|E1BXD6	148	DNAJC15 "Uncharacterized prote	0.855	0.601	0.479	1.7e-18
UNIPROTKB|Q9Y5T4	150	DNAJC15 "DnaJ homolog subfamil	0.855	0.593	0.468	2.8e-18
UNIPROTKB|A1A4R3	149	DNAJC15 "Uncharacterized prote	0.855	0.597	0.468	3.6e-18

TAIR|locus:2828254 AT2G35795 [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 76/95 (80%), Positives = 86/95 (90%)

Query:    10 GKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVM 69
             G+YGI+AWQAFKARPP  +++KFYEGGFQP MT+REAALILGVRES   EKVKEAHR+VM
Sbjct:    18 GRYGIQAWQAFKARPPRPKIKKFYEGGFQPTMTKREAALILGVRESVAAEKVKEAHRKVM 77

Query:    70 VANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
             VANHPDAGGSH+LASKINEAKD+ML +TK S SAF
Sbjct:    78 VANHPDAGGSHFLASKINEAKDVMLGKTKNSGSAF 112

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2075004 AT3G09700 "AT3G09700" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 79/95 (83%), Positives = 81/95 (85%)

Query:    10 GKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVM 69
             GKYGI AWQAFK RP   RMRKFYEGGFQ  M RREAALILGVRES   EKVKEAHRRVM
Sbjct:    18 GKYGIEAWQAFKLRPVRPRMRKFYEGGFQATMNRREAALILGVRESVAAEKVKEAHRRVM 77

Query:    70 VANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
             VANHPDAGGSHYLASKINEAKD+ML +TK S SAF
Sbjct:    78 VANHPDAGGSHYLASKINEAKDMMLGKTKNSGSAF 112

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2143488 AT5G03030 "AT5G03030" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 76/95 (80%), Positives = 82/95 (86%)

Query:    10 GKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVM 69
             G+YGI AWQAFKARP   RMR+FYEGGFQ  MTRREAALILGVRES   +KVKEAHRRVM
Sbjct:    18 GRYGILAWQAFKARPRVPRMRRFYEGGFQSSMTRREAALILGVRESVVADKVKEAHRRVM 77

Query:    70 VANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104
             VANHPDAGGSHYLASKINEAKD+ML ++  S SAF
Sbjct:    78 VANHPDAGGSHYLASKINEAKDMMLGKSNNSGSAF 112

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q3ZBN8 DNAJC19 "Mitochondrial import inner membrane translocase subunit TIM14" [Bos taurus (taxid:9913)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/81 (54%), Positives = 60/81 (74%)

Query:    18 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 77
             Q F++ P TA    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD G
Sbjct:    35 QVFQSLPKTAFSGGYYRGGFEPKMTKREAALILGVSPTANKAKIRDAHRRIMLLNHPDKG 94

Query:    78 GSHYLASKINEAKDIMLRRTK 98
             GS Y+A+KINEAKD++  + K
Sbjct:    95 GSPYIAAKINEAKDLLEGQAK 115

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q96DA6 DNAJC19 "Mitochondrial import inner membrane translocase subunit TIM14" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query:    18 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 77
             Q F++ P +A    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD G
Sbjct:    35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKG 94

Query:    78 GSHYLASKINEAKDIMLRRTK 98
             GS Y+A+KINEAKD++  + K
Sbjct:    95 GSPYIAAKINEAKDLLEGQAK 115

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0007601 "visual perception" evidence=IMP

GO:0016021 "integral to membrane" evidence=NAS

GO:0006626 "protein targeting to mitochondrion" evidence=NAS;TAS

GO:0048806 "genitalia development" evidence=IMP

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1SGA9 DNAJC19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query:    18 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 77
             Q F++ P +A    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD G
Sbjct:    35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKG 94

Query:    78 GSHYLASKINEAKDIMLRRTK 98
             GS Y+A+KINEAKD++  + K
Sbjct:    95 GSPYIAAKINEAKDLLEGQAK 115

GO:0048806 "genitalia development" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-040801-216 dnajc15 "DnaJ (Hsp40) homolog, subfamily C, member 15" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 45/91 (49%), Positives = 62/91 (68%)

Query:    10 GKYGIRAWQAF------KARP-PTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 62
             G+Y    W+         A+  P++    +Y+GGF+  MTRREA+LILG+  ++   KV+
Sbjct:    53 GRYAFHLWRPLGQVITEAAKKFPSSSFSAYYKGGFEQKMTRREASLILGISPTSTKTKVR 112

Query:    63 EAHRRVMVANHPDAGGSHYLASKINEAKDIM 93
             EAHRR+MV NHPD GGS YLA+KINEAKD++
Sbjct:   113 EAHRRIMVLNHPDKGGSPYLAAKINEAKDLL 143

GO:0048793 "pronephros development" evidence=IEA

UNIPROTKB|E1BXD6 DNAJC15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 46/96 (47%), Positives = 63/96 (65%)

Query:    10 GKYGIRAWQAF-KARPPTAR------MRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 62
             G+Y    W+   +A   TA+      +  +Y+GGF+  M+RREA+LILGV  S    K++
Sbjct:    52 GRYAFHLWKPLGQAITETAKKISTSSLSLYYKGGFEQKMSRREASLILGVSPSADKAKIR 111

Query:    63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98
              AHRR+M+ NHPD GGS YLA+KINEAKD++   TK
Sbjct:   112 AAHRRIMILNHPDKGGSPYLATKINEAKDLLESSTK 147

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y5T4 DNAJC15 "DnaJ homolog subfamily C member 15" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 45/96 (46%), Positives = 60/96 (62%)

Query:    10 GKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 62
             G+Y  R W+  +        +  T     +Y+GGF+  M+RREA LILGV  S    K++
Sbjct:    54 GRYAFRIWKPLEQVITETAKKISTPSFSSYYKGGFEQKMSRREAGLILGVSPSAGKAKIR 113

Query:    63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98
              AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct:   114 TAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A1A4R3 DNAJC15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 45/96 (46%), Positives = 62/96 (64%)

Query:    10 GKYGIRAWQAF-KARPPTAR------MRKFYEGGFQPVMTRREAALILGVRESTPTEKVK 62
             G+Y  + W+   +    TA+         +Y+GGF+  M+RREA+LILGV  S    K++
Sbjct:    53 GRYAFQIWKPLGQVITETAKKISTPSFSSYYKGGFEQKMSRREASLILGVSPSASKAKIR 112

Query:    63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98
              AHRR+M+ NHPD GGS YLA+KINEAKD++   TK
Sbjct:   113 AAHRRIMILNHPDKGGSPYLATKINEAKDLLEATTK 148

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYY2	TI143_ARATH	No assigned EC number	0.7978	0.9038	0.8392	no	no
Q5RF34	TIM14_PONAB	No assigned EC number	0.4851	0.8942	0.8017	yes	no
Q96DA6	TIM14_HUMAN	No assigned EC number	0.4851	0.8942	0.8017	yes	no
Q5B4H1	TIM14_EMENI	No assigned EC number	0.5	0.9230	0.9142	yes	no
Q3ZBN8	TIM14_BOVIN	No assigned EC number	0.4950	0.8942	0.8017	yes	no
Q4WI88	TIM14_ASPFU	No assigned EC number	0.5106	0.8846	0.8761	yes	no
Q54QN1	TIM14_DICDI	No assigned EC number	0.3867	0.9423	0.8672	yes	no
Q9SF33	TI142_ARATH	No assigned EC number	0.8297	0.9038	0.8392	no	no
Q8RV04	TI141_ARATH	No assigned EC number	0.7884	1.0	0.9285	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	2e-22
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-05
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	9e-05
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	1e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	0.003
pfam00226	63	pfam00226, DnaJ, DnaJ domain	0.004

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 83.7 bits (207), Expect = 2e-22
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 14/109 (12%)

Query: 1   MAVAAAAYAGKYGIRAWQAFKARPPT--------------ARMRKFYEGGFQPVMTRREA 46
           +       A +YG R  +  K                   +   K    GF+  M++ EA
Sbjct: 8   LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEA 67

Query: 47  ALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 95
             IL +  +   E+++EAH+++M+ NHPD GGS Y+ASK+NEAKD++L+
Sbjct: 68  YKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLLK 116

Length = 116

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPD---AGGSHYLASKINEAKDIMLRRT 97
          M +++   +LGV ++   +++++A+R++    HPD   +  +H    +INEA D++L + 
Sbjct: 1  MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKD 60

Query: 98 K 98
          K
Sbjct: 61 K 61

Length = 372

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 36.8 bits (86), Expect = 9e-05
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLAS-----KINEAKDIM 93
          ILGV      +++K+A+R++ +  HPD        +     +INEA +++
Sbjct: 6  ILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVL 55

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLA----SKINEAKDI 92
          ILGV      E++K+A+R++ +  HPD       A     +INEA ++
Sbjct: 5  ILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEV 52

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 20/76 (26%)

Query: 24 PPTARMR------KFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG 77
              R +      K YE              +L + +   T ++K+A+R++ + +HPD G
Sbjct: 16 FDGGRRKREVDNEKLYE--------------VLNLSKDCTTSEIKKAYRKLAIKHHPDKG 61

Query: 78 GSHYLASKINEAKDIM 93
          G      +I+ A +++
Sbjct: 62 GDPEKFKEISRAYEVL 77

Length = 421

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 32.9 bits (76), Expect = 0.004
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD----AGGSHYLASKINEAKDI 92
          ILGV      E++K+A+R++ +  HPD       +     +INEA ++
Sbjct: 5  ILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEV 52

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	99.93
PTZ00100	116	DnaJ chaperone protein; Provisional	99.91
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	99.86
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.75
KOG3442	132	consensus Uncharacterized conserved protein [Funct	99.73
PHA03102	153	Small T antigen; Reviewed	99.68
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.68
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.68
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.64
PRK14296	372	chaperone protein DnaJ; Provisional	99.63
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.61
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.59
PRK14288	369	chaperone protein DnaJ; Provisional	99.59
PRK14286	372	chaperone protein DnaJ; Provisional	99.58
PRK14279	392	chaperone protein DnaJ; Provisional	99.57
PRK14299	291	chaperone protein DnaJ; Provisional	99.57
PRK14287	371	chaperone protein DnaJ; Provisional	99.57
PRK14282	369	chaperone protein DnaJ; Provisional	99.56
PRK14276	380	chaperone protein DnaJ; Provisional	99.55
PRK14298	377	chaperone protein DnaJ; Provisional	99.54
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.54
PRK14285	365	chaperone protein DnaJ; Provisional	99.54
PRK14280	376	chaperone protein DnaJ; Provisional	99.53
PRK14301	373	chaperone protein DnaJ; Provisional	99.53
PRK10767	371	chaperone protein DnaJ; Provisional	99.53
PRK14294	366	chaperone protein DnaJ; Provisional	99.53
PRK14283	378	chaperone protein DnaJ; Provisional	99.53
PRK14297	380	chaperone protein DnaJ; Provisional	99.52
PRK14278	378	chaperone protein DnaJ; Provisional	99.52
PRK14295	389	chaperone protein DnaJ; Provisional	99.52
PRK14277	386	chaperone protein DnaJ; Provisional	99.51
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.51
PRK14281	397	chaperone protein DnaJ; Provisional	99.5
PRK14291	382	chaperone protein DnaJ; Provisional	99.49
PHA02624	647	large T antigen; Provisional	99.49
PRK14300	372	chaperone protein DnaJ; Provisional	99.47
PRK14284	391	chaperone protein DnaJ; Provisional	99.45
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.45
PRK14290	365	chaperone protein DnaJ; Provisional	99.45
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.44
PRK14289	386	chaperone protein DnaJ; Provisional	99.44
PRK14292	371	chaperone protein DnaJ; Provisional	99.44
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.43
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.42
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.41
PRK14293	374	chaperone protein DnaJ; Provisional	99.4
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.36
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.33
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.31
PRK05014	171	hscB co-chaperone HscB; Provisional	99.26
PRK01356	166	hscB co-chaperone HscB; Provisional	99.24
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.23
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.22
PRK00294	173	hscB co-chaperone HscB; Provisional	99.21
PRK03578	176	hscB co-chaperone HscB; Provisional	99.2
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.09
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.08
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.04
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.98
PRK01773	173	hscB co-chaperone HscB; Provisional	98.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.83
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.79
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	98.77
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.75
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.7
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.6
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	97.89
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.51
PF13446	62	RPT: A repeated domain in UCH-protein	97.37
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.77
KOG0431	453	consensus Auxilin-like protein and related protein	96.22
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	95.06
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.64
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	86.75

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.3e-25  Score=147.50  Aligned_cols=98  Identities=60%  Similarity=0.929  Sum_probs=91.6

Q ss_pred             ChHhHHHHHHHHHHH----HHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034101            1 MAVAAAAYAGKYGIR----AWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDA   76 (104)
Q Consensus         1 ~~ia~~~~~~ra~~~----A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk   76 (104)
                      ++|+++++.||++++    +|+.+...+..+.+.+||.++|++.||..||..||||+++++.+.||++||+++..||||+
T Consensus         9 ~gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~   88 (112)
T KOG0723|consen    9 LGVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDR   88 (112)
T ss_pred             HHHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcC
Confidence            367888999999999    8888888888888899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccccc
Q 034101           77 GGSHYLASKINEAKDIMLRRTK   98 (104)
Q Consensus        77 ~gs~~~~~~i~~Ay~~L~~~~k   98 (104)
                      |||||...+||+|+++|+....
T Consensus        89 GGSPYlAsKINEAKdlLe~~~~  110 (112)
T KOG0723|consen   89 GGSPYLASKINEAKDLLEGTSL  110 (112)
T ss_pred             CCCHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999986543

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.91  E-value=5.6e-24  Score=142.49  Aligned_cols=94  Identities=36%  Similarity=0.610  Sum_probs=81.2

Q ss_pred             hHhHHHHHHHHHHHHHHHHHhCCCchh----------hhhh----hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHH
Q 034101            2 AVAAAAYAGKYGIRAWQAFKARPPTAR----------MRKF----YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRR   67 (104)
Q Consensus         2 ~ia~~~~~~ra~~~A~~~~~~~~~~~~----------~~~~----~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~   67 (104)
                      ++.++.+++|+++++|++....++...          .+.+    ...++...|+.+|||+||||+++++.+||+++||+
T Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRr   88 (116)
T PTZ00100          9 TFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASKERIREAHKQ   88 (116)
T ss_pred             HHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            455668999999999998887654221          2332    25689999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 034101           68 VMVANHPDAGGSHYLASKINEAKDIMLR   95 (104)
Q Consensus        68 l~~~~HPDk~gs~~~~~~i~~Ay~~L~~   95 (104)
                      |++++|||++||++.+++|++||++|.+
T Consensus        89 La~~~HPDkgGs~~~~~kIneAyevL~k  116 (116)
T PTZ00100         89 LMLRNHPDNGGSTYIASKVNEAKDLLLK  116 (116)
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999963

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=99.86  E-value=3.8e-22  Score=135.61  Aligned_cols=98  Identities=28%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             ChHhHHHHHHHHHHHHHHHHHhCCCchh-h-hhh----hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCC
Q 034101            1 MAVAAAAYAGKYGIRAWQAFKARPPTAR-M-RKF----YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHP   74 (104)
Q Consensus         1 ~~ia~~~~~~ra~~~A~~~~~~~~~~~~-~-~~~----~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HP   74 (104)
                      |+|+|+.++||||.+||||+..+.+... + +..    ........||.+||++||||++..+.++|.+.|.+|+..|+|
T Consensus         9 iiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~   88 (127)
T PF03656_consen    9 IIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP   88 (127)
T ss_dssp             ------------------------------------------------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence            5899999999999999999995433211 1 111    111234589999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHhccccc
Q 034101           75 DAGGSHYLASKINEAKDIMLRRTK   98 (104)
Q Consensus        75 Dk~gs~~~~~~i~~Ay~~L~~~~k   98 (104)
                      ++|||+|++++|..|+++|..+.+
T Consensus        89 ~kGGSfYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   89 SKGGSFYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             CCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987653

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1e-18  Score=136.11  Aligned_cols=60  Identities=30%  Similarity=0.432  Sum_probs=55.6

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|+||||+.++|.+|||+|||+|+++||||+|. +   .++|++|++|||+|+|++||+
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa   64 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA   64 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            45568899999999999999999999999999999986 4   589999999999999999986

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=9e-18  Score=112.95  Aligned_cols=98  Identities=26%  Similarity=0.325  Sum_probs=81.7

Q ss_pred             ChHhHHHHHHHHHHHHHHHHHhCCCchhhhhh--------hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 034101            1 MAVAAAAYAGKYGIRAWQAFKARPPTARMRKF--------YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVAN   72 (104)
Q Consensus         1 ~~ia~~~~~~ra~~~A~~~~~~~~~~~~~~~~--------~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~   72 (104)
                      |||+|+.++||||.+||||...+.......+-        -.......||.+||.+||+|++..+.++|.+.|.+|+..|
T Consensus         8 iIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~yehLFevN   87 (132)
T KOG3442|consen    8 IIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRYEHLFEVN   87 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhcc
Confidence            58999999999999999998876544332111        0011124599999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhccccc
Q 034101           73 HPDAGGSHYLASKINEAKDIMLRRTK   98 (104)
Q Consensus        73 HPDk~gs~~~~~~i~~Ay~~L~~~~k   98 (104)
                      .+.+|||+|++++|-+|.|.|..+.+
T Consensus        88 dkskGGSFYLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   88 DKSKGGSFYLQSKVFRAKERLDEELK  113 (132)
T ss_pred             CcccCcceeehHHHHHHHHHHHHHHH
Confidence            99999999999999999999987665

>PHA03102 Small T antigen; Reviewed

Probab=99.68  E-value=8.7e-17  Score=112.41  Aligned_cols=59  Identities=22%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 034101           43 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~  101 (104)
                      .+++++||||++++  |.++||++||++++++|||+||+++.|++||+||++|.++.++..
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~   64 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR   64 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence            57999999999999  999999999999999999999999999999999999999988765

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.6e-17  Score=125.48  Aligned_cols=63  Identities=24%  Similarity=0.394  Sum_probs=56.9

Q ss_pred             CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ....+.++.|+||||+.+++..|||+|||+|++++|||||.+    .+.|++|+.||+||+|+.+|+
T Consensus        10 ~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk   76 (336)
T KOG0713|consen   10 EAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK   76 (336)
T ss_pred             hhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            344556788999999999999999999999999999999874    389999999999999999986

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.68  E-value=6.6e-17  Score=128.06  Aligned_cols=63  Identities=21%  Similarity=0.362  Sum_probs=58.6

Q ss_pred             CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCC
Q 034101           38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...|...++|+||||++++|.+|||++||+|++++|||++++.+.|++|++||++|+++.||+
T Consensus        22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~   84 (421)
T PTZ00037         22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK   84 (421)
T ss_pred             cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence            345566899999999999999999999999999999999999999999999999999999884

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.64  E-value=6.8e-16  Score=90.97  Aligned_cols=53  Identities=26%  Similarity=0.395  Sum_probs=49.3

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhcccc
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-----SHYLASKINEAKDIMLRRT   97 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-----s~~~~~~i~~Ay~~L~~~~   97 (104)
                      ++|+||||+++++.++|+++|+++++.+|||+++     ..+.|.+|++||++|.++.
T Consensus         2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999999999987     4588999999999999874

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.2e-16  Score=122.35  Aligned_cols=60  Identities=28%  Similarity=0.514  Sum_probs=54.8

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |+..++|+||||+++++.+|||++||+|++++|||++.   ..+.|++|++||++|+|+.||+
T Consensus         1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~   63 (372)
T PRK14296          1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK   63 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence            45568999999999999999999999999999999975   3488999999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.61  E-value=1.7e-15  Score=87.73  Aligned_cols=51  Identities=29%  Similarity=0.417  Sum_probs=47.3

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcc
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLR   95 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~   95 (104)
                      ++|++|||+++++.++|+++|+++++.+|||+++    +.+.|.+|++||++|.+
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999999987    46889999999999975

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.59  E-value=3e-15  Score=89.50  Aligned_cols=56  Identities=30%  Similarity=0.439  Sum_probs=51.0

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSH----YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~-gs~----~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||+++++.++|+++|+++++.+|||++ ++.    +.+..|++||++|.++.+|+
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~   61 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR   61 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence            579999999999999999999999999999995 445    78999999999999988764

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.3e-15  Score=118.80  Aligned_cols=57  Identities=25%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||++++|.+|||++||+|+++||||++. +   .+.|++|++||++|+++.||+
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~   63 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA   63 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence            47899999999999999999999999999999975 2   478999999999999999874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.8e-15  Score=118.10  Aligned_cols=60  Identities=32%  Similarity=0.396  Sum_probs=54.4

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |+..++|+||||+++++.+|||++||+|++++|||++.    ..+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   64 (372)
T PRK14286          1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ   64 (372)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence            45568999999999999999999999999999999975    2489999999999999999874

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.8e-15  Score=117.79  Aligned_cols=58  Identities=26%  Similarity=0.359  Sum_probs=53.6

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|+||||+++++.+|||++||+|++++|||+++ +   .+.|++|++||++|+|+.||+
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~   69 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK   69 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence            368999999999999999999999999999999976 3   488999999999999999985

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.6e-15  Score=113.78  Aligned_cols=60  Identities=27%  Similarity=0.391  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|+||||++++|.+|||++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~   63 (291)
T PRK14299          1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR   63 (291)
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHH
Confidence            445689999999999999999999999999999999863   488999999999999988763

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=3.6e-15  Score=116.39  Aligned_cols=60  Identities=27%  Similarity=0.403  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|++|||+++++.+|||++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~   63 (371)
T PRK14287          1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA   63 (371)
T ss_pred             CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence            344689999999999999999999999999999999854   478999999999999999875

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=3.7e-15  Score=116.12  Aligned_cols=60  Identities=25%  Similarity=0.356  Sum_probs=54.2

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|+||||+++++.+|||++||+|++++|||++..     .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   65 (369)
T PRK14282          1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA   65 (369)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence            445689999999999999999999999999999999752     478999999999999999885

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=5.4e-15  Score=115.66  Aligned_cols=60  Identities=23%  Similarity=0.304  Sum_probs=54.4

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|+||||+++++.+||+++||+|++++|||++.+   .+.|++|++||++|.++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   63 (380)
T PRK14276          1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA   63 (380)
T ss_pred             CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence            344689999999999999999999999999999999754   588999999999999999875

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=9.4e-15  Score=114.29  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|+||||+++++.+||+++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~   64 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA   64 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence            3589999999999999999999999999999999754   478999999999999999875

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=5.7e-15  Score=113.99  Aligned_cols=56  Identities=25%  Similarity=0.350  Sum_probs=52.4

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..|+||||+++++.+|||++||+|+++||||||++. +.|++|.+||++|+|+.||.
T Consensus         5 ~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~   61 (337)
T KOG0712|consen    5 KLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE   61 (337)
T ss_pred             ccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence            458999999999999999999999999999998864 99999999999999999874

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=8.7e-15  Score=114.01  Aligned_cols=57  Identities=23%  Similarity=0.457  Sum_probs=52.3

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.+|||++||+|++++|||++++    .+.|++|++||++|+++.+|.
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   63 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA   63 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence            578999999999999999999999999999999752    378999999999999998874

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=9.4e-15  Score=114.17  Aligned_cols=60  Identities=27%  Similarity=0.421  Sum_probs=54.2

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|+||||+++++.+|||++||+|++++|||++.   ..+.|++|++||++|+++.+|+
T Consensus         1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   63 (376)
T PRK14280          1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA   63 (376)
T ss_pred             CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence            34468999999999999999999999999999999975   3589999999999999999874

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1e-14  Score=113.91  Aligned_cols=60  Identities=23%  Similarity=0.393  Sum_probs=54.0

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |+..++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   64 (373)
T PRK14301          1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA   64 (373)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence            345689999999999999999999999999999999753    368999999999999999875

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=9.6e-15  Score=113.78  Aligned_cols=60  Identities=25%  Similarity=0.422  Sum_probs=53.8

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|+||||+++++.+|||++||+|++++|||+++ +   .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (371)
T PRK10767          1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA   64 (371)
T ss_pred             CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence            44568999999999999999999999999999999975 3   378999999999999998874

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=8.5e-15  Score=114.02  Aligned_cols=60  Identities=27%  Similarity=0.416  Sum_probs=54.3

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |...++|+||||+++++.+||+++||+|++++|||++++    .+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~   64 (366)
T PRK14294          1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG   64 (366)
T ss_pred             CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence            455789999999999999999999999999999999763    478999999999999998874

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1e-14  Score=113.98  Aligned_cols=58  Identities=24%  Similarity=0.366  Sum_probs=53.4

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|++|||+++++.+|||++||+|++++|||++.   ..+.|++|++||++|+++.+|+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~   64 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ   64 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence            468899999999999999999999999999999974   4589999999999999999874

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.5e-14  Score=113.17  Aligned_cols=59  Identities=22%  Similarity=0.403  Sum_probs=53.6

Q ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...++|+||||+++++.+||+++||+|++++|||++.+    .+.|++|++||++|+++.+|+
T Consensus         2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   64 (380)
T PRK14297          2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA   64 (380)
T ss_pred             CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence            34588999999999999999999999999999999752    378999999999999999885

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1e-14  Score=114.04  Aligned_cols=57  Identities=23%  Similarity=0.305  Sum_probs=52.7

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.+|||++||+|++++|||+++++   +.|++|++||++|+++.+|+
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   62 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR   62 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence            4789999999999999999999999999999998764   67999999999999998875

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.7e-14  Score=113.25  Aligned_cols=57  Identities=26%  Similarity=0.392  Sum_probs=52.5

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.+|||++||+|++++|||++.    ..+.|++|++||++|+++.+|+
T Consensus         9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   69 (389)
T PRK14295          9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK   69 (389)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence            58899999999999999999999999999999975    2488999999999999998774

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=1.8e-14  Score=112.97  Aligned_cols=57  Identities=32%  Similarity=0.413  Sum_probs=52.3

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.+||+++||+|++++|||++.+    .+.|++|++||++|+++.+|+
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~   65 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA   65 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence            589999999999999999999999999999999752    368999999999999998874

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.51  E-value=2e-14  Score=109.59  Aligned_cols=60  Identities=22%  Similarity=0.353  Sum_probs=54.1

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      |+..++|++|||+++++.+|||++||+|++++|||++.   ..+.|++|++||++|+++.+|+
T Consensus         1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~   63 (306)
T PRK10266          1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA   63 (306)
T ss_pred             CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHH
Confidence            44568899999999999999999999999999999975   4589999999999999988773

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=2.9e-14  Score=112.17  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=52.4

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.+|||++||+|++++|||++++    .+.|++|++||++|.++.+|+
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~   63 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR   63 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence            478999999999999999999999999999999863    478999999999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=4.2e-14  Score=110.69  Aligned_cols=57  Identities=30%  Similarity=0.384  Sum_probs=52.6

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.++||++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~   62 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK   62 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence            478999999999999999999999999999999853   588999999999999998874

>PHA02624 large T antigen; Provisional

Probab=99.49  E-value=6.6e-14  Score=114.98  Aligned_cols=60  Identities=20%  Similarity=0.273  Sum_probs=57.0

Q ss_pred             HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 034101           43 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS  102 (104)
Q Consensus        43 ~~ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~~  102 (104)
                      .+++|++|||++++  +.++||++||++++++|||+||+++.|++|++||++|.++.++.+.
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            46899999999999  9999999999999999999999999999999999999999988765

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=6.9e-14  Score=109.19  Aligned_cols=57  Identities=25%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||++++|.+||+++||++++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~   62 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA   62 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence            578999999999999999999999999999999753   478999999999999998774

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=8.4e-14  Score=109.32  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=51.5

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||+++++.+|||++||+|++++|||++.+    .+.|++|++||++|.++.+|+
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   61 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE   61 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence            57999999999999999999999999999999763    478999999999999998774

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.45  E-value=1e-13  Score=107.26  Aligned_cols=56  Identities=29%  Similarity=0.392  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||+++++.++||++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~   59 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA   59 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence            46999999999999999999999999999999853   478999999999999998774

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.45  E-value=1.1e-13  Score=107.67  Aligned_cols=57  Identities=26%  Similarity=0.344  Sum_probs=52.1

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.+||+++||+|++++|||++.+     .+.|++|++||++|+++.+|+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR   64 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence            478999999999999999999999999999999753     378999999999999998874

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.44  E-value=2.9e-13  Score=101.82  Aligned_cols=58  Identities=29%  Similarity=0.379  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhccc
Q 034101           39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----S-------HYLASKINEAKDIMLRR   96 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s-------~~~~~~i~~Ay~~L~~~   96 (104)
                      ..++..++|++|||++++|.++||++||+|++++|||+..    +       .+.+++|++||++|++.
T Consensus       195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999942    2       26899999999999864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=1.1e-13  Score=108.34  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=53.0

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|++|||+++++.+||+++||+|++++|||++. +   .+.|++|++||++|.++.+|+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   65 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS   65 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence            468999999999999999999999999999999975 2   478999999999999998875

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.44  E-value=1.8e-13  Score=106.63  Aligned_cols=57  Identities=25%  Similarity=0.366  Sum_probs=52.4

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.++|+++||+|++++|||++++   .+.|++|++||++|+++.+|+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~   61 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA   61 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence            367999999999999999999999999999999864   478999999999999998874

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.8e-13  Score=108.81  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=53.9

Q ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101           42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...-+|++|||..+++..+|+++||+|++++|||++++     .+.|+.|+.||+||++++.|+
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~   69 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA   69 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence            34678999999999999999999999999999999875     488999999999999998874

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=1.5e-13  Score=100.49  Aligned_cols=57  Identities=25%  Similarity=0.410  Sum_probs=52.5

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhcccccCCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDA----GGSHYLASKINEAKDIMLRRTKGSN  101 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk----~gs~~~~~~i~~Ay~~L~~~~k~~~  101 (104)
                      +.++||||+++++..|||++||+|.+++||||    +++.+.+..|+.||+.|.|...|.|
T Consensus       100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN  160 (230)
T KOG0721|consen  100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSREN  160 (230)
T ss_pred             CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHH
Confidence            45999999999999999999999999999999    5678899999999999999887754

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=3.9e-13  Score=100.93  Aligned_cols=59  Identities=27%  Similarity=0.405  Sum_probs=54.2

Q ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...+.|++|||+++++.++||++||+|++++|||++|+    +.+|.+||.||++|+|+.+|.
T Consensus        29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~   91 (279)
T KOG0716|consen   29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN   91 (279)
T ss_pred             chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence            35688999999999999999999999999999999775    488999999999999999874

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=2.9e-13  Score=107.91  Aligned_cols=60  Identities=22%  Similarity=0.284  Sum_probs=54.7

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ....|.|.+|||+++++.+||+++||++++.+||||+-|+       +.|++|.+|||+|+|+++|+
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa   72 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA   72 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            3446899999999999999999999999999999998754       77999999999999999885

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2.4e-13  Score=103.33  Aligned_cols=62  Identities=23%  Similarity=0.379  Sum_probs=55.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .+++.+++|+||||+.+++..|||.+|++|++++|||-+.   ....|++|.+|||+|.++.||+
T Consensus        38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~  102 (288)
T KOG0715|consen   38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ  102 (288)
T ss_pred             ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence            4455568999999999999999999999999999999864   4588999999999999999874

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=3.4e-13  Score=105.32  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=52.3

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.++|+++||+|++++|||++.   ..+.|++|++||++|+++.+|+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~   62 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA   62 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence            47899999999999999999999999999999975   3588999999999999998874

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=7.9e-13  Score=100.82  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s~---~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..|+|.||||+++++..+|+++||..++++|||+|+ +|   +.|+.|.+||++|.++..|+
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~   65 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA   65 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence            468999999999999999999999999999999986 33   88999999999999998774

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.33  E-value=1.8e-12  Score=110.48  Aligned_cols=60  Identities=22%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      +...++|+||||+++++..+||++||+|++++|||++.+   ...|++|++||++|+++.+|+
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk  632 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK  632 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence            345689999999999999999999999999999999763   478999999999999999885

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=4.3e-12  Score=88.79  Aligned_cols=58  Identities=28%  Similarity=0.346  Sum_probs=52.8

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH----YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s~----~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..+.|+||||+++++..||+++||++++++|||+++ ++    +.|+.|++||++|.++.++.
T Consensus         5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~   67 (237)
T COG2214           5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA   67 (237)
T ss_pred             hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence            467899999999999999999999999999999976 33    88999999999999988774

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.26  E-value=1.1e-11  Score=88.05  Aligned_cols=56  Identities=18%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|++|||+++  .+..+|+++|+++++++|||+..+         .+.+..||+||++|+++.+|+
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra   68 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA   68 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence            57999999996  788999999999999999999532         246788999999999998875

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.24  E-value=1.2e-11  Score=87.40  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=48.9

Q ss_pred             HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|++|||+++  ++..+|+++|+++.+++|||+..+.       +.+..||+||++|+++.+|+
T Consensus         3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra   67 (166)
T PRK01356          3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA   67 (166)
T ss_pred             CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            57999999997  7899999999999999999997543       23579999999999998875

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.23  E-value=1.1e-11  Score=103.71  Aligned_cols=57  Identities=26%  Similarity=0.462  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.++||++||+|++++|||++++.   ..|++|++||++|+++.+|+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa   61 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA   61 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence            4689999999999999999999999999999997643   57899999999999998875

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=9.8e-12  Score=92.04  Aligned_cols=56  Identities=18%  Similarity=0.323  Sum_probs=51.8

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG------SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g------s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      +.|+||||..+++..+|+++|++|++++|||++.      ..+.|+.|+.+|.+|.|+++|+
T Consensus        15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~   76 (264)
T KOG0719|consen   15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA   76 (264)
T ss_pred             CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            7799999999999999999999999999999973      4588999999999999998874

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.21  E-value=2.6e-11  Score=86.33  Aligned_cols=59  Identities=14%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             CHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101           42 TRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ....++++|||++.  .+..+|+++||++.+++|||+..+         .+.+..||+||++|+++.+|+
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra   71 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA   71 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence            34567999999998  688999999999999999999532         245789999999999998875

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.20  E-value=3.5e-11  Score=85.82  Aligned_cols=57  Identities=21%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             HHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs--~-------~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++  .+..+|+++|+++.+++|||+..+  .       +.+..||.||++|+++.+|+
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra   73 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA   73 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence            588999999996  689999999999999999999542  1       33578999999999998875

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=5.4e-11  Score=89.40  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=53.2

Q ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..+++|++|||..+++..||.++||.|+++||||++.+   ..+|..|..||++|+++..++
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt   92 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRT   92 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHH
Confidence            35789999999999999999999999999999999753   478999999999999987765

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=6.8e-10  Score=95.90  Aligned_cols=73  Identities=16%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCC-HHHH
Q 034101            9 AGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES----TPTEKVKEAHRRVMVANHPDAGGS-HYLA   83 (104)
Q Consensus         9 ~~ra~~~A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~----~~~~eik~ayr~l~~~~HPDk~gs-~~~~   83 (104)
                      +.|..+.+|+.....+             +..|+.++|++||.|+-+    .+.+.||++|++|+.+||||||+. -++|
T Consensus      1259 fL~~~L~~W~~ElekK-------------P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemF 1325 (2235)
T KOG1789|consen 1259 FLRCCLATWYNELEKK-------------PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMF 1325 (2235)
T ss_pred             HHHHHHHHHHHHHhcC-------------CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            4567778888777665             678999999999999965    466999999999999999999975 4899


Q ss_pred             HHHHHHHHHhc
Q 034101           84 SKINEAKDIML   94 (104)
Q Consensus        84 ~~i~~Ay~~L~   94 (104)
                      -+||.|||+|.
T Consensus      1326 e~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1326 ERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHHHHHHH
Confidence            99999999998

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.7e-10  Score=91.92  Aligned_cols=57  Identities=19%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|.+|||++++|.++||+.||+++...|||||-.   .|.|+.|..||++|.+..+|.
T Consensus       235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~  294 (490)
T KOG0720|consen  235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK  294 (490)
T ss_pred             CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence            479999999999999999999999999999999864   488999999999999988874

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.98  E-value=6.1e-10  Score=87.29  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=53.6

Q ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHHhcccccCCC
Q 034101           42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHY-------LASKINEAKDIMLRRTKGSN  101 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~-------~~~~i~~Ay~~L~~~~k~~~  101 (104)
                      ...++|+||||..++++.||-++||+++.+||||.-.+.+       .|.-|..|.+||.++++|+.
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq  458 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ  458 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence            3468999999999999999999999999999999976653       57789999999999999873

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.91  E-value=1.9e-09  Score=76.75  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=49.0

Q ss_pred             HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~g--s-------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      +++++|||++.  .+...++++|+.+.+++|||+..  +       .+....||+||.+|+++.+|+
T Consensus         3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA   69 (173)
T PRK01773          3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA   69 (173)
T ss_pred             ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence            57899999997  89999999999999999999942  2       245688999999999998875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=3.4e-09  Score=84.11  Aligned_cols=60  Identities=25%  Similarity=0.392  Sum_probs=53.7

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C----HHHHHHHHHHHHHhcccccCCCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S----HYLASKINEAKDIMLRRTKGSNS  102 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s----~~~~~~i~~Ay~~L~~~~k~~~~  102 (104)
                      +.+||.|||+..+++..||+++||++++.||||++. +    .-+|+++-+||.+|.++.++.+.
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~  436 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF  436 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence            468999999999999999999999999999999964 4    35699999999999999988653

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.79  E-value=9.8e-09  Score=82.34  Aligned_cols=62  Identities=26%  Similarity=0.448  Sum_probs=53.2

Q ss_pred             hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCCC
Q 034101           33 YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGSN  101 (104)
Q Consensus        33 ~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~~  101 (104)
                      +..++++       |+||||+.+++..+||++||+|..++||||-..         .+...+|+.||+.|.+...|.|
T Consensus        94 ~~~~fDP-------yEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren  164 (610)
T COG5407          94 YRRGFDP-------YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN  164 (610)
T ss_pred             HHcCCCh-------HHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4455666       999999999999999999999999999999542         3668899999999999887754

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6e-09  Score=76.13  Aligned_cols=57  Identities=28%  Similarity=0.397  Sum_probs=50.1

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-----~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|.||||..+++.++|+++|+++++++|||++.+.     ..++++.+||++|.++.++.
T Consensus         3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~   64 (306)
T KOG0714|consen    3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK   64 (306)
T ss_pred             ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence            4789999999999888999999999999999996544     35788899999999988875

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.75  E-value=1.5e-08  Score=71.08  Aligned_cols=45  Identities=16%  Similarity=0.114  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 034101           56 TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        56 ~~~~eik~ayr~l~~~~HPDk~g--s-------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .+..+|+++|+++.+++|||+..  +       .+.++.||+||++|+++.+|+
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra   56 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA   56 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence            57899999999999999999842  1       256789999999999999875

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.6e-08  Score=73.85  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=46.8

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-H----HHHHHHHHHHHhcccc
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-Y----LASKINEAKDIMLRRT   97 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-~----~~~~i~~Ay~~L~~~~   97 (104)
                      .+|++|+|+|+++.++|++.||+|.+..|||+|.+. +    .|--|..||..|.++.
T Consensus        54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~  111 (250)
T KOG1150|consen   54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDK  111 (250)
T ss_pred             ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHH
Confidence            569999999999999999999999999999999865 3    3556889999998776

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.1e-07  Score=71.15  Aligned_cols=52  Identities=31%  Similarity=0.409  Sum_probs=47.5

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHH-Hhc
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKD-IML   94 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~-~L~   94 (104)
                      ..|++.||||.++++.++++.+|.+|++++|||.|.   |.+.|.+|.+||. +|.
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq  101 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999975   6799999999999 554

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=2.2e-05  Score=60.04  Aligned_cols=57  Identities=19%  Similarity=0.328  Sum_probs=49.7

Q ss_pred             HHHHHHhCCCCC---CCHHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRES---TPTEKVKEAHRRVMVANHPDAG------GSHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~---~~~~eik~ayr~l~~~~HPDk~------gs~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .+.|.+|||+.-   ++..+|.+++++.+.+||||+.      |..+.|.-|..||++|.+..+|.
T Consensus        43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~  108 (379)
T COG5269          43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRL  108 (379)
T ss_pred             hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHh
Confidence            567999999963   7889999999999999999983      35688999999999999988764

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00013  Score=51.75  Aligned_cols=50  Identities=28%  Similarity=0.441  Sum_probs=42.1

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDA---GGSH--------YLASKINEAKDIM   93 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk---~gs~--------~~~~~i~~Ay~~L   93 (104)
                      .+++.+||+....+..+|+++|+.++..+|||+   .|++        +.++++++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999999998   3332        4566677777654

>PF13446 RPT: A repeated domain in UCH-protein

Probab=97.37  E-value=0.0012  Score=39.05  Aligned_cols=48  Identities=23%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR   95 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~   95 (104)
                      |+.++||++||++++.+.+.|-.+|+....       .+|.....+.+|..+|-+
T Consensus         2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE   49 (62)
T ss_pred             CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence            889999999999999999999999999988       333455555666665543

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0027  Score=44.88  Aligned_cols=58  Identities=22%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             HHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG-------S--HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~g-------s--~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ....+.+||....  .+++.+...|-...++.|||+-+       +  .+...+||+||.+|.++.+|+
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA   75 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA   75 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence            4577899988765  67788888999999999999832       2  266789999999999998875

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.22  E-value=0.0059  Score=49.39  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=20.7

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCC
Q 034101           55 STPTEKVKEAHRRVMVANHPDA   76 (104)
Q Consensus        55 ~~~~~eik~ayr~l~~~~HPDk   76 (104)
                      -++..+||++|||-++..||||
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDK  420 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDK  420 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCccc
Confidence            3789999999999999999999

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=95.06  E-value=0.07  Score=38.71  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=35.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccc
Q 034101           53 RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRR   96 (104)
Q Consensus        53 ~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~   96 (104)
                      ++++|.+||.+++.++..+|    +||.....+|..|||.|.-.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999998    58888999999999987644

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=0.022  Score=40.26  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhcccccC
Q 034101           56 TPTEKVKEAHRRVMVANHPDAGGSH---------YLASKINEAKDIMLRRTKG   99 (104)
Q Consensus        56 ~~~~eik~ayr~l~~~~HPDk~gs~---------~~~~~i~~Ay~~L~~~~k~   99 (104)
                      .+.+.++..|+.+...+|||+.++.         +.+..+|.||.+|+++.++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~r   67 (174)
T COG1076          15 IDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLR   67 (174)
T ss_pred             HHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3667788999999999999996532         3567799999999988765

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=86.75  E-value=0.98  Score=30.02  Aligned_cols=42  Identities=26%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCH--------HHHHHHHHHHHHhccc
Q 034101           55 STPTEKVKEAHRRVMVANHPDAGGSH--------YLASKINEAKDIMLRR   96 (104)
Q Consensus        55 ~~~~~eik~ayr~l~~~~HPDk~gs~--------~~~~~i~~Ay~~L~~~   96 (104)
                      ..+..+++.+-|....+.|||--++.        +-++.|+.=-+.|...
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            35678999999999999999975432        2234455545555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
2guz_A	71	Structure Of The Tim14-tim16 Complex Of The Mitocho		2e-16

>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The Mitochondrial Protein Import Motor Length = 71

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 32 FYEGGFQPVMTRREAALILGVRESTPTEK-VKEAHRRVMVANHPDAGGSHYLASKINEAK 90
          F +GGF P M  +EA  IL + E+T T+K +KE HR++M+ANHPD GGS +LA+KINEAK
Sbjct: 2  FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAK 61
Query: 91 DIMLRR 96
          D + +R
Sbjct: 62 DFLEKR 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
2guz_A	71	Mitochondrial import inner membrane translocase su	9e-31
2guz_B	65	Mitochondrial import inner membrane translocase su	7e-21
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-04
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	3e-04

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score =  102 bits (257), Expect = 9e-31
 Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 32 FYEGGFQPVMTRREAALILGVRESTPT-EKVKEAHRRVMVANHPDAGGSHYLASKINEAK 90
          F +GGF P M  +EA  IL + E+T T +K+KE HR++M+ANHPD GGS +LA+KINEAK
Sbjct: 2  FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAK 61

Query: 91 DIMLRRTK 98
          D + +R  
Sbjct: 62 DFLEKRGI 69

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 65

 Score = 77.6 bits (191), Expect = 7e-21
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 41 MTRREAALILGVRESTPT---EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 97
          MT  E+  IL + ES      +K+      +   N  + GGS YL SK+  A + +    
Sbjct: 1  MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWEL 60

Query: 98 K 98
           
Sbjct: 61 A 61

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 49 ILGV-RESTPTEK-VKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98
          +L + R+       +++A+++  +  HPD GGSH L  ++N           
Sbjct: 16 LLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVY 67

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 49 ILGV-RESTPTEK-VKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 93
          +LG+ R +      +++A+ +     HPD GG      K+N     M
Sbjct: 16 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKM 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
2guz_A	71	Mitochondrial import inner membrane translocase su	99.89
2guz_B	65	Mitochondrial import inner membrane translocase su	99.83
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.8
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.74
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.73
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.71
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.7
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.69
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.69
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.68
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.68
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.68
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.67
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.67
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.66
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.65
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.64
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.64
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.64
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.62
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.62
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.59
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.58
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.56
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.51
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.5
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.49
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.48
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.46
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.44
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.43
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.42
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.31
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.46

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.2e-23  Score=126.38  Aligned_cols=68  Identities=51%  Similarity=0.869  Sum_probs=64.5

Q ss_pred             hhcCCCCCCCCHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccC
Q 034101           32 FYEGGFQPVMTRREAALILGVRE-STPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKG   99 (104)
Q Consensus        32 ~~~~~~~~~m~~~ea~~iLgl~~-~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~   99 (104)
                      |+.+++...|+.+++|+||||++ +++.++|+++||+|++++|||++|+++.|++|++||++|+++..|
T Consensus         2 ~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A            2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             CcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            57889999999999999999999 799999999999999999999999999999999999999987655

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.5e-21  Score=116.03  Aligned_cols=58  Identities=29%  Similarity=0.420  Sum_probs=55.2

Q ss_pred             CCHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101           41 MTRREAALILGVRES---TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK   98 (104)
Q Consensus        41 m~~~ea~~iLgl~~~---~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k   98 (104)
                      ||.+||+.||||+++   ++.++|+++||+|+..||||+|||+|++++|++|+++|..+.+
T Consensus         1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~   61 (65)
T 2guz_B            1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELA   61 (65)
T ss_dssp             CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999   8999999999999999999999999999999999999987543

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.80  E-value=6.8e-20  Score=114.23  Aligned_cols=64  Identities=17%  Similarity=0.244  Sum_probs=58.7

Q ss_pred             CCHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 034101           41 MTRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF  104 (104)
Q Consensus        41 m~~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~~~~  104 (104)
                      ....++|+||||+++  ++.++||++||+|++++|||++|+.+.|++|++||++|+++.+|..+.|
T Consensus         8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~~   73 (79)
T 1faf_A            8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence            345789999999999  9999999999999999999999999999999999999999888876543

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=3.5e-18  Score=108.59  Aligned_cols=59  Identities=27%  Similarity=0.425  Sum_probs=55.5

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhcccccCCCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAG---GSHYLASKINEAKDIMLRRTKGSNS  102 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~---gs~~~~~~i~~Ay~~L~~~~k~~~~  102 (104)
                      .++|+||||+++++.++||++||+|++++|||++   +..+.|++|++||++|.++.+|+.+
T Consensus        27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~~   88 (90)
T 2ys8_A           27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPS   88 (90)
T ss_dssp             SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccCC
Confidence            5789999999999999999999999999999997   5679999999999999999999876

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.73  E-value=6.3e-18  Score=107.43  Aligned_cols=63  Identities=13%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccccc
Q 034101           36 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTK   98 (104)
Q Consensus        36 ~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k   98 (104)
                      +...+++..++|+||||+++++.++||++||+|++++|||++++     .+.|++|++||++|++...
T Consensus         8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~   75 (88)
T 1iur_A            8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            34678889999999999999999999999999999999999875     4889999999999998654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.7e-17  Score=106.90  Aligned_cols=65  Identities=20%  Similarity=0.168  Sum_probs=58.8

Q ss_pred             CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           36 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        36 ~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .....|+..++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|.++.+|+
T Consensus         9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   77 (99)
T 2yua_A            9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR   77 (99)
T ss_dssp             CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            34567888999999999999999999999999999999999863    689999999999999998764

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.4e-17  Score=102.95  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           40 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        40 ~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++..++|+||||+++++.++|+++||++++++|||++++    .+.|++|++||++|.++.+|+
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   67 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK   67 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            3455688999999999999999999999999999999764    588999999999999988764

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=2.3e-17  Score=104.18  Aligned_cols=60  Identities=23%  Similarity=0.290  Sum_probs=54.3

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++..++|+||||+++++.++|+++||+|++++|||++++   .+.|++|++||++|.++.+|+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~   66 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK   66 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence            445679999999999999999999999999999999876   578999999999999988764

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3.1e-17  Score=104.38  Aligned_cols=59  Identities=25%  Similarity=0.334  Sum_probs=54.5

Q ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhcccccCC
Q 034101           42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~-gs~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...++|+||||+++++.++|+++|++|++++|||++ ++.+.|++|++||++|+++.+|+
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~   65 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE   65 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence            446899999999999999999999999999999997 57899999999999999988764

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=3.1e-17  Score=102.00  Aligned_cols=59  Identities=20%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101           42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...++|+||||+++++.++|+++|+++++++|||++++     .+.|++|++||++|.++.+|+
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD   70 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            34688999999999999999999999999999999865     368999999999999998764

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.68  E-value=4.7e-17  Score=99.33  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.++|+++|+++++++|||++++ .+.|++|++||++|.++.+|+
T Consensus         8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~   65 (73)
T 2och_A            8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ   65 (73)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence            578999999999999999999999999999999764 799999999999999998764

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.6e-17  Score=102.45  Aligned_cols=61  Identities=25%  Similarity=0.281  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           40 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        40 ~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++..++|+||||+++++.++|+++|+++++++|||+++   +.+.|++|++||++|.++.+|+
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   66 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK   66 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence            345678999999999999999999999999999999985   4588999999999999988764

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.67  E-value=1.4e-17  Score=110.35  Aligned_cols=60  Identities=22%  Similarity=0.198  Sum_probs=56.4

Q ss_pred             HHHHHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 034101           43 RREAALILGVRESTPT--EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS  102 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~--~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~~  102 (104)
                      ..++|+||||+++++.  ++||++||+|++++|||++++.+.|++|++||++|.++.+|+..
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~   68 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQ   68 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCS
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHh
Confidence            4578999999999988  99999999999999999999999999999999999999999863

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=6.2e-17  Score=106.00  Aligned_cols=64  Identities=20%  Similarity=0.307  Sum_probs=57.0

Q ss_pred             CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           37 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        37 ~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ....++..++|+||||+++++.++||++||+|++++|||++++    .+.|++|++||++|.++.+|+
T Consensus        10 r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~   77 (109)
T 2ctw_A           10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN   77 (109)
T ss_dssp             CCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            3455666789999999999999999999999999999999874    588999999999999988764

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=6.5e-17  Score=102.63  Aligned_cols=58  Identities=26%  Similarity=0.339  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|+||||+++++.++|+++|++|++++|||++++     .+.|++|++||++|.++.+|+
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS   70 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4578999999999999999999999999999999764     478999999999999988763

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.65  E-value=1.3e-16  Score=100.69  Aligned_cols=58  Identities=21%  Similarity=0.307  Sum_probs=53.2

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|+||||+++++.++|+++||++++++|||+++   ..+.|++|++||++|.++.+|+
T Consensus        16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   76 (88)
T 2cug_A           16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT   76 (88)
T ss_dssp             SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence            458899999999999999999999999999999975   4689999999999999988764

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-16  Score=104.89  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=54.8

Q ss_pred             CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      +...++|+||||+++++.++|+++||+|++++|||++++    .+.|++|++||++|.++.+|+
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~   80 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA   80 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            445789999999999999999999999999999999874    689999999999999998764

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.64  E-value=1e-16  Score=98.63  Aligned_cols=56  Identities=27%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||+++++.++|+++|+++++++|||+++   +.+.|++|++||++|+++.+|+
T Consensus         4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   62 (77)
T 1hdj_A            4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence            5699999999999999999999999999999975   4689999999999999988764

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.64  E-value=2.8e-17  Score=104.41  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=56.2

Q ss_pred             CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHhcccccCC
Q 034101           38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----------SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----------s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...|+..++|+||||+++++.++||++||+|++++|||++.          ..+.|++|++||++|.++.+|+
T Consensus        10 ~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   82 (94)
T 1wjz_A           10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             CSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            34567789999999999999999999999999999999964          2478999999999999998764

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=4.1e-16  Score=107.26  Aligned_cols=62  Identities=19%  Similarity=0.270  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHhcccccCC
Q 034101           39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..|+..++|+||||+++++.++||++||+|++++|||++++          .+.|++|++||++|+++.+|+
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~   76 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR   76 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34666799999999999999999999999999999999653          278999999999999998875

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=4.6e-16  Score=100.46  Aligned_cols=56  Identities=25%  Similarity=0.322  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||+++++.++||++||++++++|||++++     .+.|++|++||++|.++.+|+
T Consensus         3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~   63 (99)
T 2lgw_A            3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE   63 (99)
T ss_dssp             CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            57999999999999999999999999999999864     378999999999999988764

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.59  E-value=4.7e-16  Score=101.46  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             HHHHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVREST-PTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~~-~~~eik~ayr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|+||||++++ +.++|+++||++++++|||++++       .+.|++|++||++|.++.+|+
T Consensus        14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~   79 (109)
T 2qsa_A           14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT   79 (109)
T ss_dssp             TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            46789999999999 99999999999999999999876       488999999999999998764

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.58  E-value=1.8e-16  Score=111.81  Aligned_cols=59  Identities=22%  Similarity=0.203  Sum_probs=52.0

Q ss_pred             HHHHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 034101           43 RREAALILGVRESTP--TEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN  101 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~--~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~  101 (104)
                      ..++|+||||+++++  .++||++||++++++|||++++.+.|++|++||++|+++.+|+.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~   70 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH   70 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            468999999999987  69999999999999999999999999999999999999988753

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.56  E-value=2e-16  Score=102.43  Aligned_cols=56  Identities=23%  Similarity=0.385  Sum_probs=51.2

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||+++++.++||++||+|++++|||++++    .+.|++|++||++|+++.+|+
T Consensus         4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   63 (103)
T 1bq0_A            4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA   63 (103)
T ss_dssp             CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHH
T ss_pred             CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            56999999999999999999999999999999763    578999999999999988764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.51  E-value=8.2e-15  Score=103.22  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.++||++||++++++|||+++    ..+.|++|++||++|.++.+|+
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~   62 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK   62 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence            36899999999999999999999999999999975    3578999999999999998764

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.50  E-value=1.7e-15  Score=115.62  Aligned_cols=63  Identities=22%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ...|+..++|+||||+++++.++||++||+|++++|||++.+   .+.|++|++||++|+++.+|+
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~   87 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA   87 (329)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhc
Confidence            456788999999999999999999999999999999999754   588999999999999998886

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.49  E-value=3.5e-15  Score=95.54  Aligned_cols=51  Identities=18%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcc
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLR   95 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~   95 (104)
                      ..|++|||+++++.++||++||++++++|||++++       .+.|+.|++||++|.+
T Consensus        34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            44899999999999999999999999999999642       3579999999999985

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.48  E-value=1.6e-14  Score=101.30  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             HHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVREST--PTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||++++  +.++|+++||++++++|||++++         .+.|+.|++||++|+++.+|+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~   68 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            579999999998  99999999999999999999653         257999999999999998874

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.44  E-value=7.6e-14  Score=100.56  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=50.9

Q ss_pred             HHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|+||||+++  ++.++|+++||+|++++|||++++         .+.|++||+||++|+++.+|+
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~  110 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG  110 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4578999999986  799999999999999999999652         246799999999999998874

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.43  E-value=9.8e-15  Score=103.60  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      +++|+||||+++++.++||++||++++++|||++.+       .+.|++|++||++|.++.+|+
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~  180 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP  180 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence            467999999999999999999999999999999642       468999999999999999886

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.42  E-value=8.2e-15  Score=95.84  Aligned_cols=53  Identities=17%  Similarity=0.092  Sum_probs=47.0

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhcccc
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----S-------HYLASKINEAKDIMLRRT   97 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s-------~~~~~~i~~Ay~~L~~~~   97 (104)
                      .++|+|||++. ++.++||++||++++++|||++.    +       .+.|++|++||++|+++.
T Consensus        41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            46799999986 99999999999999999999953    3       578999999999999864

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.31  E-value=1.8e-13  Score=96.86  Aligned_cols=58  Identities=14%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             HHHHHHHh------CCCC-CCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhcccccCC
Q 034101           43 RREAALIL------GVRE-STPTEKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        43 ~~ea~~iL------gl~~-~~~~~eik~ayr~l~~~~HPDk~g-s~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..++|+||      |+++ +++.++|+++||+|++++|||+++ +.+.|++|++||++|+++.+|+
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~   75 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRS   75 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHH
Confidence            34779999      4665 799999999999999999999987 6788999999999999998774

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.23  E-value=7.7e-13  Score=108.22  Aligned_cols=62  Identities=19%  Similarity=0.293  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ......++|+||||+++++.++||++||+|++++|||++++    .+.|++|++||++|+++.+|+
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~   81 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK   81 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHH
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHH
Confidence            34445789999999999999999999999999999999752    478999999999999998774

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.46  E-value=1.4e-07  Score=69.79  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=49.7

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGSN  101 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~k~~~  101 (104)
                      +.|.+||+....+.++++++|+++++.+|||+..++       +.|++|++||++|.|+.+|..
T Consensus       383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~  446 (450)
T 2y4t_A          383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK  446 (450)
T ss_dssp             CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred             hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence            457788999999999999999999999999997754       479999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.79
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.75
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.66
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.59
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.59
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.48
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.43

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.79  E-value=4.2e-20  Score=114.07  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=55.6

Q ss_pred             HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 034101           43 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS  102 (104)
Q Consensus        43 ~~ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~~  102 (104)
                      ..++|+||||++++  +.++|+++||++++++|||+||+++.|++||+||++|+++.+|...
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~   71 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHH
Confidence            46889999999986  9999999999999999999999999999999999999999877543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.75  E-value=1.2e-19  Score=118.35  Aligned_cols=57  Identities=23%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             HHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .+.|+||||+.++  +.++||++||+|++++|||+||+.+.|++|++||++|.++.+|+
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~   66 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYA   66 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHH
Confidence            5789999999997  78899999999999999999999999999999999999998876

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.2e-17  Score=100.43  Aligned_cols=57  Identities=23%  Similarity=0.387  Sum_probs=51.1

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||++++|.++|+++||++++++|||++++    .+.|.+|++||++|+++.+|.
T Consensus         3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~   63 (75)
T d1xbla_           3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA   63 (75)
T ss_dssp             CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHH
T ss_pred             CCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            367999999999999999999999999999999753    367999999999999998763

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.8e-16  Score=100.19  Aligned_cols=57  Identities=19%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHhcccccCC
Q 034101           44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      .++|+||||+++++.++|+++|++|++++|||++..          .+.|..|++||++|.++.+|+
T Consensus        16 ~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~   82 (94)
T d1wjza_          16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             cChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            479999999999999999999999999999999632          266899999999999988764

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.2e-16  Score=96.77  Aligned_cols=56  Identities=14%  Similarity=0.213  Sum_probs=50.4

Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccccc
Q 034101           43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTK   98 (104)
Q Consensus        43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k   98 (104)
                      ..++|+|||+++++|.+|||++||+|++++|||++++     .+.|+.|++||++|++...
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~   75 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999763     3679999999999986543

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.5e-16  Score=94.08  Aligned_cols=56  Identities=27%  Similarity=0.344  Sum_probs=51.3

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||++++|.++|+++|+++++++|||++.+   .+.+..|++||++|.++.+|+
T Consensus         4 dyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~   62 (77)
T d1hdja_           4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHH
Confidence            57999999999999999999999999999999754   478999999999999998764

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.1e-14  Score=88.27  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~g--s-------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ++|+||||+.+  ++.++|+++|+++++.+|||+..  +       ...++.|++||++|.++.+|+
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~   68 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            57999999986  56899999999999999999842  2       255788999999999998874

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=7.7e-15  Score=93.24  Aligned_cols=56  Identities=18%  Similarity=0.274  Sum_probs=50.1

Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 034101           45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS  100 (104)
Q Consensus        45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~~~k~~  100 (104)
                      ..|++|||++.++.++||++|+++++.+|||++.+       ...|+.|++||++|.++.+|+
T Consensus        34 ~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~   96 (98)
T d1nz6a_          34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP   96 (98)
T ss_dssp             CSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             cCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHh
Confidence            34889999999999999999999999999998543       357899999999999999886