Citrus Sinensis ID: 034169

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSRAFSKRSMSSI
Secondary Structure (PSIPRED)
cccEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEccEEEEEEEEcccEEEEEEEccccccccHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccEEEEEEEccccEEEEEEcccccccccHHHccccccc
Coil and Loop (DISEMBL)
MATTACFIIVsrneipiyeaevgsavkreDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLcyfttlgmmmgsraFSKRSMSSI
Flexible Loop (DISEMBL)
mattacfiivsrneipiyEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSRAFSKRSMSSI
Low Complexity Region (SEG)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSRAFSKRSMSSI
Disordered region (IsUnstruct)
***TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMMM*************
Disordered Region (DISOPRED)
**TTACFIIVSRNEIPIYE****************QFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTL*****************
Disordered Region (DISEMBL)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSRA*********
Disordered Region (DISPRO)
*ATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLG****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSRAFSKRSMSSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q9VUZ1	139	Probable trafficking prot	yes	no	0.725	0.532	0.480	2e-14
Q5RES6	140	Trafficking protein parti	yes	no	0.754	0.55	0.425	5e-14
Q9CQP2	140	Trafficking protein parti	yes	no	0.754	0.55	0.425	6e-14
P0DI82	140	Trafficking protein parti	yes	no	0.754	0.55	0.425	6e-14
P0DI81	140	Trafficking protein parti	yes	no	0.754	0.55	0.425	6e-14
E2QV03	140	Trafficking protein parti	no	no	0.754	0.55	0.425	6e-14
F1SRI0	140	Trafficking protein parti	yes	no	0.754	0.55	0.425	6e-14
Q3T0F2	140	Trafficking protein parti	yes	no	0.754	0.55	0.425	6e-14
Q08CN0	140	Trafficking protein parti	yes	no	0.754	0.55	0.412	2e-13
Q28IG8	140	Trafficking protein parti	yes	no	0.754	0.55	0.412	2e-13

>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2 OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 3/77 (3%)

Query: 3  TTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLK 59
          +T  F+IV +N+ PIYE E   V   +++ED   L QFI HAALD+V +  W T+ M LK
Sbjct: 2  STYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLK 61

Query: 60 AIDRFNDLVVSVYVTAG 76
          +IDRFN   VS ++TA 
Sbjct: 62 SIDRFNQWFVSAFITAS 78

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1 OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Prevents transcriptional repression and induction of cell death by ENO1. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens GN=TRAPPC2 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Prevents transcriptional repression and induction of cell death by ENO1 (By similarity). May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris GN=TRAPPC2 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Canis familiaris (taxid: 9615)

>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Sus scrofa (taxid: 9823)

>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio GN=trappc2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F++V  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Danio rerio (taxid: 7955)

>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus tropicalis GN=trappc2 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G    ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
297743416	129	unnamed protein product [Vitis vinifera]	0.843	0.666	0.853	9e-37
449459192	135	PREDICTED: trafficking protein particle	0.852	0.644	0.836	2e-36
224075712	135	predicted protein [Populus trichocarpa]	0.754	0.570	0.935	7e-36
224115772	135	predicted protein [Populus trichocarpa]	0.852	0.644	0.826	1e-35
359482681	135	PREDICTED: LOW QUALITY PROTEIN: traffick	0.852	0.644	0.826	2e-35
145337812	135	SNARE-like protein [Arabidopsis thaliana	0.852	0.644	0.804	3e-35
119720824	135	putative TRAPP subunit [Brassica rapa]	0.852	0.644	0.793	5e-35
351724257	135	uncharacterized protein LOC100527093 [Gl	0.852	0.644	0.804	7e-35
6730745	81	unknown protein; 47435-46588 [Arabidopsi	0.774	0.975	0.898	8e-35
388511673	135	unknown [Lotus japonicus]	0.754	0.570	0.896	2e-34

>gi|297743416|emb|CBI36283.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 81/89 (91%), Gaps = 3/89 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA+TACFIIVSRN+IPIYEAEVGSAVK+EDAAQ HQFILHAALD+VQDLAWTTSAMFLKA
Sbjct: 1  MASTACFIIVSRNDIPIYEAEVGSAVKKEDAAQQHQFILHAALDVVQDLAWTTSAMFLKA 60

Query: 61 IDRFNDLVVSVYVTAGHDL---CYFTTLG 86
          IDRFNDLVVSVYVTAGH L   C+F   G
Sbjct: 61 IDRFNDLVVSVYVTAGHILLLICFFQPKG 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459192|ref|XP_004147330.1| PREDICTED: trafficking protein particle complex subunit 2-like [Cucumis sativus] gi|449508705|ref|XP_004163387.1| PREDICTED: trafficking protein particle complex subunit 2-like [Cucumis sativus]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/92 (83%), Positives = 82/92 (89%), Gaps = 5/92 (5%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61 IDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSR 92
          +DRFNDLVVSVYVTAGH     T L ++  SR
Sbjct: 61 VDRFNDLVVSVYVTAGH-----TRLMLLHDSR 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075712|ref|XP_002304731.1| predicted protein [Populus trichocarpa] gi|222842163|gb|EEE79710.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN+IPIYEAEVGSA KREDAAQ+HQFILHAALDIVQDLAWTTSAM+LKA
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGSATKREDAAQMHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61 IDRFNDLVVSVYVTAGH 77
          IDRFND+VVSVYVTAGH
Sbjct: 61 IDRFNDMVVSVYVTAGH 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115772|ref|XP_002332053.1| predicted protein [Populus trichocarpa] gi|222831939|gb|EEE70416.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 82/92 (89%), Gaps = 5/92 (5%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSR++IPIYEAEVGSA KREDAAQ+HQFILHAALDIVQDLAWTTSAM+LKA
Sbjct: 1  MATTACFIIVSRDDIPIYEAEVGSATKREDAAQMHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61 IDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSR 92
          IDRFNDLVVSVYVTAGH     T L ++  SR
Sbjct: 61 IDRFNDLVVSVYVTAGH-----TRLMLLHDSR 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482681|ref|XP_003632807.1| PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 2-like [Vitis vinifera]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 82/92 (89%), Gaps = 5/92 (5%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA+TACFIIVSRN+IPIYEAEVGSAVK+EDAAQ HQFILHAALD+VQDLAWTTSAMFLKA
Sbjct: 1  MASTACFIIVSRNDIPIYEAEVGSAVKKEDAAQQHQFILHAALDVVQDLAWTTSAMFLKA 60

Query: 61 IDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSR 92
          IDRFNDLVVSVYVTAGH     T L ++  SR
Sbjct: 61 IDRFNDLVVSVYVTAGH-----TRLMLLHDSR 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145337812|ref|NP_178165.2| SNARE-like protein [Arabidopsis thaliana] gi|332198292|gb|AEE36413.1| SNARE-like protein [Arabidopsis thaliana]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 80/92 (86%), Gaps = 5/92 (5%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 IDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSR 92
          +DRFNDLVVSVYVTAGH     T L ++  SR
Sbjct: 61 VDRFNDLVVSVYVTAGH-----TRLMLLHDSR 87

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119720824|gb|ABL97982.1| putative TRAPP subunit [Brassica rapa]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 81/92 (88%), Gaps = 5/92 (5%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA TACF+IV+RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFMIVARNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 IDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSR 92
          +DRFNDLVVSVYVTAGH     T L ++  SR
Sbjct: 61 VDRFNDLVVSVYVTAGH-----TRLMLLHDSR 87

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724257|ref|NP_001238587.1| uncharacterized protein LOC100527093 [Glycine max] gi|255631540|gb|ACU16137.1| unknown [Glycine max]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 81/92 (88%), Gaps = 5/92 (5%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN+IPIYEAEVG A KREDAAQLHQFILHAALDIVQDLAWTTSAM+LK+
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKS 60

Query: 61 IDRFNDLVVSVYVTAGHDLCYFTTLGMMMGSR 92
          +DRFN+LVVSVYVTAGH     T L ++  SR
Sbjct: 61 VDRFNELVVSVYVTAGH-----TRLMLLHDSR 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6730745|gb|AAF27135.1|AC018849_23 unknown protein; 47435-46588 [Arabidopsis thaliana] gi|32815883|gb|AAP88335.1| At1g80500 [Arabidopsis thaliana]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/79 (89%), Positives = 75/79 (94%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 IDRFNDLVVSVYVTAGHDL 79
          +DRFNDLVVSVYVTAGH L
Sbjct: 61 VDRFNDLVVSVYVTAGHIL 79

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511673|gb|AFK43898.1| unknown [Lotus japonicus]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/77 (89%), Positives = 75/77 (97%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
          MATTACFIIVSRN+IPIYEAEVG A KREDAAQLHQFILHAALD+VQDLAWTTSAM+LK+
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60

Query: 61 IDRFNDLVVSVYVTAGH 77
          +DRFN+LVVSVYVTAGH
Sbjct: 61 VDRFNELVVSVYVTAGH 77

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2198983	135	AT1G80500 "AT1G80500" [Arabido	0.754	0.570	0.909	1.5e-33
UNIPROTKB|G1K394	147	TRAPPC2 "Trafficking protein p	0.872	0.605	0.391	1.4e-14
UNIPROTKB|G5EA75	144	TRAPPC2 "Trafficking protein p	0.794	0.562	0.428	1.8e-14
UNIPROTKB|Q3T0F2	140	TRAPPC2 "Trafficking protein p	0.754	0.55	0.425	1e-13
UNIPROTKB|E2QV03	140	TRAPPC2 "Trafficking protein p	0.754	0.55	0.425	1e-13
UNIPROTKB|F5H785	113	TRAPPC2 "Trafficking protein p	0.754	0.681	0.425	1e-13
UNIPROTKB|P0DI81	140	TRAPPC2 "Trafficking protein p	0.754	0.55	0.425	1e-13
UNIPROTKB|P0DI82	140	TRAPPC2P1 "Trafficking protein	0.754	0.55	0.425	1e-13
UNIPROTKB|F1SRI0	140	TRAPPC2 "Trafficking protein p	0.754	0.55	0.425	1e-13
RGD|1306925	140	Trappc2 "trafficking protein p	0.754	0.55	0.425	1.3e-13

TAIR|locus:2198983 AT1G80500 "AT1G80500" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:     1 MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
             MA TACFIIV RN+IPIYEAEVGSA KREDAAQLHQFILHAALD+VQDLAWTTSAMFLK+
Sbjct:     1 MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query:    61 IDRFNDLVVSVYVTAGH 77
             +DRFNDLVVSVYVTAGH
Sbjct:    61 VDRFNDLVVSVYVTAGH 77

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|G1K394 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 36/92 (39%), Positives = 58/92 (63%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHDLCYFTTLGMMM 89
             LK +D+FN+  VS +VTAGH L +   +  +M
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHILTFLVKMRFIM 92

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|G5EA75 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/84 (42%), Positives = 55/84 (65%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGHDLCY 81
             LK +D+FN+  VS +VTAGH L Y
Sbjct:    61 LKTVDKFNEWFVSAFVTAGHILIY 84

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q3T0F2 TRAPPC2 "Trafficking protein particle complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGH 77
             LK +D+FN+  VS +VTAGH
Sbjct:    61 LKTVDKFNEWFVSAFVTAGH 80

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2QV03 TRAPPC2 "Trafficking protein particle complex subunit 2" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGH 77
             LK +D+FN+  VS +VTAGH
Sbjct:    61 LKTVDKFNEWFVSAFVTAGH 80

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F5H785 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGH 77
             LK +D+FN+  VS +VTAGH
Sbjct:    61 LKTVDKFNEWFVSAFVTAGH 80

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|P0DI81 TRAPPC2 "Trafficking protein particle complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGH 77
             LK +D+FN+  VS +VTAGH
Sbjct:    61 LKTVDKFNEWFVSAFVTAGH 80

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0001501 "skeletal system development" evidence=IMP

GO:0044325 "ion channel binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|P0DI82 TRAPPC2P1 "Trafficking protein particle complex subunit 2 protein TRAPPC2P1" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGH 77
             LK +D+FN+  VS +VTAGH
Sbjct:    61 LKTVDKFNEWFVSAFVTAGH 80

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1SRI0 TRAPPC2 "Trafficking protein particle complex subunit 2" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAE---VGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGH 77
             LK +D+FN+  VS +VTAGH
Sbjct:    61 LKTVDKFNEWFVSAFVTAGH 80

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

RGD|1306925 Trappc2 "trafficking protein particle complex 2" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query:     1 MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
             M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct:     1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query:    58 LKAIDRFNDLVVSVYVTAGH 77
             LK +D+FN+  VS +VTAGH
Sbjct:    61 LKTVDKFNEWFVSAFVTAGH 80

GO:0001501 "skeletal system development" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030008 "TRAPP complex" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.2003.1 annotation not avaliable (134 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	102
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	3e-28
COG5603	136	COG5603, TRS20, Subunit of TRAPP, an ER-Golgi teth	4e-14

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score = 98.8 bits (247), Expect = 3e-28
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 9  IVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLV 68
          I+ + + P+YE E  S  K      L+QFI HA+LDIV++L W T+ M+L  +D FNDL 
Sbjct: 1  IIGKKDNPLYEQEFSSEGKTSIPKHLNQFIAHASLDIVEELQWKTNNMYLGLVDSFNDLA 60

Query: 69 VSVYVTAGH 77
          VS YVT  H
Sbjct: 61 VSGYVTNTH 69

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

>gnl|CDD|227890 COG5603, TRS20, Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

 Score = 63.0 bits (153), Expect = 4e-14
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 4  TACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60
               I+   + P+YE E     K    E    L+QFI+HA+LDIV  L W+ +  +   
Sbjct: 2  GEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDC 61

Query: 61 IDRFNDLVVSVYVT 74
          +D F DL +S Y+ 
Sbjct: 62 LDSFGDLRISAYIM 75

Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	100.0
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	99.96
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.95
KOG3444	121	consensus Uncharacterized conserved protein [Funct	99.93
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	96.3
KOG3369	199	consensus Transport protein particle (TRAPP) compl	92.38
KOG3368	140	consensus Transport protein particle (TRAPP) compl	88.82

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-34  Score=204.04  Aligned_cols=85  Identities=48%  Similarity=0.797  Sum_probs=77.2

Q ss_pred             eEEEEEEcCCCCeeEEEEccC----CCcchhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCceE
Q 034169            4 TACFIIVSRNEIPIYEAEVGS----AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDL   79 (102)
Q Consensus         4 ~~~~aIVG~~d~PLYe~~~~s----~~~~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~iK   79 (102)
                      +.||||||+.|+|+||.|++.    ..++++.++++|||+|||||+|||.+|++++||||.||+|++|.||||||+|+||
T Consensus         2 ~~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~i~   81 (139)
T KOG3487|consen    2 TAYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASHIR   81 (139)
T ss_pred             ceEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCcEE
Confidence            349999999999999999993    3347889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCcee
Q 034169           80 CYFTTLGMM   88 (102)
Q Consensus        80 fil~~~~~~   88 (102)
                      |+++-.++-
T Consensus        82 f~mlh~~~~   90 (139)
T KOG3487|consen   82 FIMLHINRA   90 (139)
T ss_pred             EEEEeeccc
Confidence            998644443

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=99.96  E-value=1.9e-29  Score=177.92  Aligned_cols=89  Identities=30%  Similarity=0.472  Sum_probs=69.4

Q ss_pred             EEcCCCCeeEEEEccCCCcch--hHHHHHHHHHHhhhhhHHHhhhc-cCccccccccccCCeEEEEEEeCCceEEEEeeC
Q 034169            9 IVSRNEIPIYEAEVGSAVKRE--DAAQLHQFILHAALDIVQDLAWT-TSAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTL   85 (102)
Q Consensus         9 IVG~~d~PLYe~~~~s~~~~~--~~~~~~qfi~HaSLDiVeE~~w~-t~~~YLk~ld~f~~~~VsayvT~~~iKfil~~~   85 (102)
                      |||++|+|||++++++++...  ...++.||++|+|||+|||++|. ++++|||.||++++|+||||+|+|++|||++..
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~   80 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD   80 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence            899999999999999876432  24677999999999999999999 999999999999999999999999999999876


Q ss_pred             ---ceeecc--hhhhhh
Q 034169           86 ---GMMMGS--RAFSKR   97 (102)
Q Consensus        86 ---~~~~~~--~~~~~~   97 (102)
                         +..+|+  +.||++
T Consensus        81 ~~~~~~~d~~ik~fF~~   97 (132)
T PF04628_consen   81 MSDNSIRDEDIKQFFKE   97 (132)
T ss_dssp             GGG-S--HHHHHHHHHH
T ss_pred             cccCCcchHHHHHHHHH
Confidence               444443  466665

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.95  E-value=5.8e-28  Score=171.62  Aligned_cols=93  Identities=29%  Similarity=0.512  Sum_probs=83.2

Q ss_pred             eEEEEEEcCCCCeeEEEEccC---CCcchhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCceEE
Q 034169            4 TACFIIVSRNEIPIYEAEVGS---AVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHDLC   80 (102)
Q Consensus         4 ~~~~aIVG~~d~PLYe~~~~s---~~~~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~iKf   80 (102)
                      ..|+||||++|+|+||+++++   .++++..++++|||+|||||+|+.++|+.|..|+++||.|.+..|+||++|++.||
T Consensus         2 ~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf   81 (136)
T COG5603           2 GEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKF   81 (136)
T ss_pred             CceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceE
Confidence            359999999999999999994   34567889999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCceeecc-hhhhh
Q 034169           81 YFTTLGMMMGS-RAFSK   96 (102)
Q Consensus        81 il~~~~~~~~~-~~~~~   96 (102)
                      +++-.++-++| |+|+.
T Consensus        82 ~~iH~n~s~~N~rsF~q   98 (136)
T COG5603          82 LFIHQNQSRKNARSFLQ   98 (136)
T ss_pred             EEEeccchhhhHHHHHH
Confidence            99877766665 56653

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=4.5e-26  Score=159.71  Aligned_cols=86  Identities=14%  Similarity=0.260  Sum_probs=77.2

Q ss_pred             eEEEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhhhc-------cCccccccccccCCeEEEEEEeCC
Q 034169            4 TACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWT-------TSAMFLKAIDRFNDLVVSVYVTAG   76 (102)
Q Consensus         4 ~~~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~w~-------t~~~YLk~ld~f~~~~VsayvT~~   76 (102)
                      .+|++++|++|+|||.+.+..    .|.+...||.+|+|||+|||+...       ++++|||++++.++|+||||+|||
T Consensus         2 ~v~~av~g~kn~~lyi~s~t~----~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNT   77 (121)
T KOG3444|consen    2 LVCLAVAGPKNEPLYIESITP----KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNT   77 (121)
T ss_pred             EEEEEEEcCCCCccEEEecCc----HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEecc
Confidence            579999999999999999864    366677899999999999999853       479999999999999999999999


Q ss_pred             ceEEEEe---eCceeecchh
Q 034169           77 HDLCYFT---TLGMMMGSRA   93 (102)
Q Consensus        77 ~iKfil~---~~~~~~~~~~   93 (102)
                      ++|||++   ++.++||+|-
T Consensus        78 kVKFIlvvdssd~avretei   97 (121)
T KOG3444|consen   78 KVKFILVVDSSDYAVRETEI   97 (121)
T ss_pred             EEEEEEEEcCCcceehhHHH
Confidence            9999986   6899999973

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=96.30  E-value=0.089  Score=37.60  Aligned_cols=83  Identities=11%  Similarity=-0.043  Sum_probs=47.7

Q ss_pred             EEEEEEcCCCCeeEEEEccCCC-----cchhHHHHHHHHHHhhhhhHHHhhhcc-------CccccccccccCCeEEEEE
Q 034169            5 ACFIIVSRNEIPIYEAEVGSAV-----KREDAAQLHQFILHAALDIVQDLAWTT-------SAMFLKAIDRFNDLVVSVY   72 (102)
Q Consensus         5 ~~~aIVG~~d~PLYe~~~~s~~-----~~~~~~~~~qfi~HaSLDiVeE~~w~t-------~~~YLk~ld~f~~~~Vsay   72 (102)
                      +.|-|+++...-+|-+++....     +..+.+.+.=+=.--||-.+=.++...       +.-.++. ...+.|++..|
T Consensus         2 yslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~-~~T~~yklh~~   80 (142)
T PF04099_consen    2 YSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFES-FETDTYKLHCF   80 (142)
T ss_dssp             EEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEE-EEESS-EEEEE
T ss_pred             eEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEE-EEeCCEEEEEE
Confidence            5688999999999999998643     222222222233333455555554431       1122322 34778999999


Q ss_pred             EeCCceEEEEeeCcee
Q 034169           73 VTAGHDLCYFTTLGMM   88 (102)
Q Consensus        73 vT~~~iKfil~~~~~~   88 (102)
                      -|+|++|||++++...
T Consensus        81 eT~TGlKFvl~td~~~   96 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNV   96 (142)
T ss_dssp             E-TTS-EEEEEE-TTC
T ss_pred             EcCcCcEEEEEecCCC
Confidence            9999999999988776

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.38  E-value=0.97  Score=34.66  Aligned_cols=35  Identities=6%  Similarity=0.076  Sum_probs=31.9

Q ss_pred             cCCeEEEEEEeCCceEEEEeeCceeecchhhhhhh
Q 034169           64 FNDLVVSVYVTAGHDLCYFTTLGMMMGSRAFSKRS   98 (102)
Q Consensus        64 f~~~~VsayvT~~~iKfil~~~~~~~~~~~~~~~~   98 (102)
                      +..+....|.|-|++||+++++.+.-..|++.|+-
T Consensus       128 tdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLrKi  162 (199)
T KOG3369|consen  128 TDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLRKI  162 (199)
T ss_pred             eccEEEEEEEccCCcEEEEEecCCchhHHHHHHHH
Confidence            56788999999999999999999999999999874

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.82  E-value=5.6  Score=29.15  Aligned_cols=82  Identities=15%  Similarity=0.071  Sum_probs=55.8

Q ss_pred             ceEEEEEEcCCCCeeEEEEccCCCc---chhHHHHHHHHHHhhhhhHHHhhhcc--CccccccccccCCeEEEEEEeCCc
Q 034169            3 TTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTT--SAMFLKAIDRFNDLVVSVYVTAGH   77 (102)
Q Consensus         3 ~~~~~aIVG~~d~PLYe~~~~s~~~---~~~~~~~~qfi~HaSLDiVeE~~w~t--~~~YLk~ld~f~~~~VsayvT~~~   77 (102)
                      +-+-|-|-.++.+-||-.|-..++.   .++.++-.=|=.-.||--+=.|+...  ++-++  -++.+.|++.=|-||++
T Consensus         2 tiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~--sy~Ts~YklhfyeTptg   79 (140)
T KOG3368|consen    2 TIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFL--SYKTSKYKLHFYETPTG   79 (140)
T ss_pred             eEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCee--EEeeceeEEEEEEcCCC
Confidence            3455778888888999887764321   22333334476777887777776543  23222  35678899999999999


Q ss_pred             eEEEEeeCc
Q 034169           78 DLCYFTTLG   86 (102)
Q Consensus        78 iKfil~~~~   86 (102)
                      +||++.++.
T Consensus        80 lk~vl~Tdp   88 (140)
T KOG3368|consen   80 LKFVLNTDP   88 (140)
T ss_pred             cEEEEecCC
Confidence            999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
2j3w_A	142	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		4e-15
1h3q_A	140	Crystal Sturcture Of Sedl At 2.4 Angstroms Resoluti		4e-15

>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 142

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 3  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62
Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 63 LKTVDKFNEWFVSAFVTAGH 82

>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution Length = 140

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 1  MATTACFIIVSRNEIPIYEAEV---GSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
2j3w_A	142	Sedlin, trafficking protein particle complex prote	4e-22
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	5e-05

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score = 83.1 bits (205), Expect = 4e-22
 Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGS---AVKREDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E      A  ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 3  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 63 LKTVDKFNEWFVSAFVTAGH 82

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae} Length = 162

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 1  MATTACFI-IVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQD--LAWTTSAMF 57
          M+   CF+ ++  ++ PI       A    +    +  + + +LD  +   + W +    
Sbjct: 6  MSLRPCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSK 65

Query: 58 LKAIDRFNDLVVSVY 72
                F    VSV+
Sbjct: 66 PLLKSIFQLEGVSVF 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.96
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	99.92
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	99.83
3cue_C	159	Transport protein particle 18 kDa subunit; membran	99.62
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	99.54
3cue_A	219	Transport protein particle 23 kDa subunit; membran	97.92

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.96  E-value=1.1e-28  Score=175.08  Aligned_cols=97  Identities=36%  Similarity=0.592  Sum_probs=87.3

Q ss_pred             CCceEEEEEEcCCCCeeEEEEccCCCc---chhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCc
Q 034169            1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH   77 (102)
Q Consensus         1 m~~~~~~aIVG~~d~PLYe~~~~s~~~---~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~   77 (102)
                      |++.+||+|||++|+|||++++++.++   +++.+++.||++|++||++||+.|+++++|||.+|+|++|+||||+|+|+
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            777999999999999999999987543   45677888999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCce-eecchhhhhh
Q 034169           78 DLCYFTTLGM-MMGSRAFSKR   97 (102)
Q Consensus        78 iKfil~~~~~-~~~~~~~~~~   97 (102)
                      +||+++++.. --+-+.|+++
T Consensus        83 ~Kfvl~~d~~~~~~i~~~~~~  103 (142)
T 2j3w_A           83 MRFIMLHDVRQEDGIKNFFTD  103 (142)
T ss_dssp             CEEEEEESSCCHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHH
Confidence            9999998874 5566778776

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.3e-26  Score=167.12  Aligned_cols=92  Identities=11%  Similarity=0.066  Sum_probs=73.0

Q ss_pred             EEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhh--hccCc--cccccccccCCeEEEEEE-eCCceEE
Q 034169            6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLA--WTTSA--MFLKAIDRFNDLVVSVYV-TAGHDLC   80 (102)
Q Consensus         6 ~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~--w~t~~--~YLk~ld~f~~~~Vsayv-T~~~iKf   80 (102)
                      +++|||++|+|||++.+++.....+.....||++|+|||++||++  |++++  +|||+++++++++||||+ |+|++||
T Consensus        12 FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKf   91 (162)
T 3pr6_A           12 FVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKI   91 (162)
T ss_dssp             EEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEE
T ss_pred             EEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEE
Confidence            566999999999999998764333445667999999999999999  98865  799999999999999997 9999999


Q ss_pred             EEeeCc----eeec----chhhhhh
Q 034169           81 YFTTLG----MMMG----SRAFSKR   97 (102)
Q Consensus        81 il~~~~----~~~~----~~~~~~~   97 (102)
                      |++.+.    .++|    -++||++
T Consensus        92 Vl~~d~~~~~~~~D~~~~Ik~~F~~  116 (162)
T 3pr6_A           92 VIGFEQKSLSGADDEFEAINQIFET  116 (162)
T ss_dssp             EEEEEGGGCCCCHHHHHHHHHHHHH
T ss_pred             EEEEccCCcccccchHHHHHHHHHH
Confidence            987654    3444    3467764

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=99.83  E-value=2.8e-20  Score=132.53  Aligned_cols=95  Identities=13%  Similarity=-0.016  Sum_probs=83.5

Q ss_pred             ceEEEEEEcCCCCeeEEEEccCCC--c-c-hhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCce
Q 034169            3 TTACFIIVSRNEIPIYEAEVGSAV--K-R-EDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHD   78 (102)
Q Consensus         3 ~~~~~aIVG~~d~PLYe~~~~s~~--~-~-~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~i   78 (102)
                      +.+||+|||++|+|||+++++.++  + . ++...+.++++|+.+|++++..|.++.++++.+ ++++|+|++|+|+|++
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTGI   80 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTSC
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCCC
Confidence            579999999999999999997643  1 1 344455699999999999999999888999988 8999999999999999


Q ss_pred             EEEEeeCceeecchhhhhhh
Q 034169           79 LCYFTTLGMMMGSRAFSKRS   98 (102)
Q Consensus        79 Kfil~~~~~~~~~~~~~~~~   98 (102)
                      |||++++..--+-+.|+++-
T Consensus        81 KFvl~td~~~~~i~~~l~~i  100 (145)
T 2j3t_C           81 KVVMNTDLGVGPIRDVLHHI  100 (145)
T ss_dssp             EEEEEECTTCCCCHHHHHHH
T ss_pred             EEEEEecCCcchHHHHHHHH
Confidence            99999999888889999874

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.62  E-value=8.4e-16  Score=111.12  Aligned_cols=94  Identities=17%  Similarity=0.046  Sum_probs=75.2

Q ss_pred             ceEEEEEEcCCCCeeEEEEccCC----------CcchhHHHHHHHHHHhhhhhHHHhhhcc-CccccccccccCCeEEEE
Q 034169            3 TTACFIIVSRNEIPIYEAEVGSA----------VKREDAAQLHQFILHAALDIVQDLAWTT-SAMFLKAIDRFNDLVVSV   71 (102)
Q Consensus         3 ~~~~~aIVG~~d~PLYe~~~~s~----------~~~~~~~~~~qfi~HaSLDiVeE~~w~t-~~~YLk~ld~f~~~~Vsa   71 (102)
                      +.+||.|||++++|||++++...          ...++..++.+.++|+..+++++..|.. .+-|  ...+.++|++++
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f--~~~~T~~ykl~~   79 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI--RSISTGKYRVHT   79 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE--EEEECSSCBEEE
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe--EEEeeCCEEEEE
Confidence            57899999999999999999642          1134556678888888888888888865 2444  455678999999


Q ss_pred             EEeCCceEEEEeeCceeecchhhhhhh
Q 034169           72 YVTAGHDLCYFTTLGMMMGSRAFSKRS   98 (102)
Q Consensus        72 yvT~~~iKfil~~~~~~~~~~~~~~~~   98 (102)
                      |.|+|++|||++++..--+-+.|+|+-
T Consensus        80 ~eT~TgiKFvl~td~~~~~i~~~l~~i  106 (159)
T 3cue_C           80 YCTASGLWFVLLSDFKQQSYTQVLQYI  106 (159)
T ss_dssp             ECCSSCCEEEEECCSSSSCTHHHHHHH
T ss_pred             EEeCCCCEEEEEeCCCcchHHHHHHHH
Confidence            999999999999999888888998874

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=99.54  E-value=8.9e-15  Score=111.28  Aligned_cols=89  Identities=7%  Similarity=-0.001  Sum_probs=72.2

Q ss_pred             EEEEEcCCCCeeEEEEccCCCcchhHHHHHHHHHHhhhhhHHHhhhccC-ccccccccccCCeEEEEEEeCCceEEEEee
Q 034169            6 CFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTS-AMFLKAIDRFNDLVVSVYVTAGHDLCYFTT   84 (102)
Q Consensus         6 ~~aIVG~~d~PLYe~~~~s~~~~~~~~~~~qfi~HaSLDiVeE~~w~t~-~~YLk~ld~f~~~~VsayvT~~~iKfil~~   84 (102)
                      ...|+|++|+|||++.+.+... +....+...++| |||++++++|..+ ...+..+ .+++|+++||+|+|++||++++
T Consensus        83 ~~~iigk~N~PLyir~f~~~l~-sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~~-~T~~ykl~~y~T~TgiKFVLlt  159 (219)
T 2j3t_D           83 LEYLGNPANYPVSIRFGRPRLT-SNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEML-ETDTFKLHCYQTLTGIKFVVLA  159 (219)
T ss_dssp             HHHTTCGGGCSEEEEEECCCCC-HHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSEE-EESSCEEEEEECTTSCEEEEEE
T ss_pred             eeeeecCCCCceEEEecCCCCC-hhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeEE-ecCceEEEEEEcCCCCEEEEEe
Confidence            3568999999999999976432 223334567999 9999999999754 4566555 6899999999999999999999


Q ss_pred             Cceeecchhhhhh
Q 034169           85 LGMMMGSRAFSKR   97 (102)
Q Consensus        85 ~~~~~~~~~~~~~   97 (102)
                      +..--+-+.|+|+
T Consensus       160 d~~~~~ir~~l~~  172 (219)
T 2j3t_D          160 DPRQAGIDSLLRK  172 (219)
T ss_dssp             CTTCCCHHHHHHH
T ss_pred             cCCchHHHHHHHH
Confidence            9887788888887

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.00012  Score=55.69  Aligned_cols=32  Identities=13%  Similarity=0.042  Sum_probs=25.4

Q ss_pred             CccccccccccCCeEEEEEEeCCceEEEEeeCcee
Q 034169           54 SAMFLKAIDRFNDLVVSVYVTAGHDLCYFTTLGMM   88 (102)
Q Consensus        54 ~~~YLk~ld~f~~~~VsayvT~~~iKfil~~~~~~   88 (102)
                      ..+++..   .++|+||||+|+|++|||++++...
T Consensus       117 ~g~~~~~---Td~y~l~~f~T~TGiKFVlltd~~~  148 (219)
T 3cue_A          117 SGLRQLC---TDQFTMFIYQTLTGLKFVAISSSVM  148 (219)
T ss_dssp             SSCCEEE---ESSCEEEEEECTTSCEEEEEESSCC
T ss_pred             CceEEEE---eCCEEEEEEEcCCCCEEEEEecCCC
Confidence            3454433   5577899999999999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	6e-24

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.5 bits (214), Expect = 6e-24
 Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 3/80 (3%)

Query: 1  MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMF 57
          M+ +  F+IV  ++ P++E E     K   ++D   L+QFI HAALD+V +  W ++ M+
Sbjct: 1  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 58 LKAIDRFNDLVVSVYVTAGH 77
          LK +D+FN+  VS +VTAGH
Sbjct: 61 LKTVDKFNEWFVSAFVTAGH 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	99.97

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.4e-32  Score=192.22  Aligned_cols=97  Identities=35%  Similarity=0.577  Sum_probs=86.3

Q ss_pred             CCceEEEEEEcCCCCeeEEEEccCCCc---chhHHHHHHHHHHhhhhhHHHhhhccCccccccccccCCeEEEEEEeCCc
Q 034169            1 MATTACFIIVSRNEIPIYEAEVGSAVK---REDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGH   77 (102)
Q Consensus         1 m~~~~~~aIVG~~d~PLYe~~~~s~~~---~~~~~~~~qfi~HaSLDiVeE~~w~t~~~YLk~ld~f~~~~VsayvT~~~   77 (102)
                      |++++||+|||++|+|||+++|+++++   .++.+++.||++|+|||++||++|+++++|||+||++++|+||||+|+|+
T Consensus         1 ~~~~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg   80 (140)
T d2j3wa1           1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   80 (140)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             CccEEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCC
Confidence            899999999999999999999987653   36678899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCceeec-chhhhhh
Q 034169           78 DLCYFTTLGMMMG-SRAFSKR   97 (102)
Q Consensus        78 iKfil~~~~~~~~-~~~~~~~   97 (102)
                      +|||++++..--+ -+.|+++
T Consensus        81 ~Kfvl~td~~~~~~i~~~~~~  101 (140)
T d2j3wa1          81 MRFIMLHDVRQEDGIKNFFTD  101 (140)
T ss_dssp             CEEEEEESSCCHHHHHHHHHH
T ss_pred             cEEEEEeCCCcchHHHHHHHH
Confidence            9999988764333 3566664