Citrus Sinensis ID: 034179

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MCKPVVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccccccEEEEEEEcHHcccccccccEEEEccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccEEEEcccHHHHcccccccccEEEEEEcHHHcccccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
mckpvvgssgvplIARKMKFVEDAIKFYMGVLaasedpcllvsaasfkaPLLKAVSWMEnnsekffcsqsdgahcwtlfstaaygkrnkvpqVFLHINVCLV
Flexible Loop (DISEMBL)
mckpvvgssgvpliaRKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAygkrnkvpqVFLHINVCLV
Low Complexity Region (SEG)
MCKPVVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Disordered region (IsUnstruct)
*********GVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCL*
Disordered Region (DISOPRED)
********SGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFF*SQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Disordered Region (DISEMBL)
********SGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Disordered Region (DISPRO)
*CKPVVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCKPVVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQVFLHINVCLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
255580905	467	conserved hypothetical protein [Ricinus	0.833	0.182	0.543	3e-16
224130614	496	predicted protein [Populus trichocarpa]	0.843	0.173	0.5	1e-15
147823103	2691	hypothetical protein VITISV_000598 [Viti	0.833	0.031	0.488	2e-15
449443231	545	PREDICTED: uncharacterized protein LOC10	0.843	0.157	0.489	3e-15
449483109	536	PREDICTED: uncharacterized protein LOC10	0.843	0.160	0.489	3e-15
225463946	467	PREDICTED: uncharacterized protein LOC10	0.833	0.182	0.477	5e-14
296087896	518	unnamed protein product [Vitis vinifera]	0.833	0.164	0.477	6e-14
108862915	456	expressed protein [Oryza sativa Japonica	0.843	0.188	0.436	8e-13
222617407	481	hypothetical protein OsJ_36748 [Oryza sa	0.843	0.178	0.436	1e-12
115489414	497	Os12g0597400 [Oryza sativa Japonica Grou	0.843	0.173	0.436	1e-12

>gi|255580905|ref|XP_002531271.1| conserved hypothetical protein [Ricinus communis] gi|223529104|gb|EEF31084.1| conserved hypothetical protein [Ricinus communis]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 7/92 (7%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAAS-FKAPLLKAV---SWMEN 60
           ++ SSG+PLIAR+MK ++  +     +LAA E+P  + S AS F+   +K V   SWM N
Sbjct: 243 LLASSGLPLIARQMKKLD--LSPIWALLAAFEEPLPIPSGASPFEGAFVKGVDSISWMGN 300

Query: 61  NSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
           NS K F SQS+G HCWT FSTAA+GKRNKVPQ
Sbjct: 301 NSMKLF-SQSNGPHCWTFFSTAAFGKRNKVPQ 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 6/92 (6%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAAS-FKAPLLKAV---SWMEN 60
           ++ SSG+PLIAR+MK +   +     +LAA EDP  + + A+ F+   +K V   SWM N
Sbjct: 267 LLASSGLPLIARQMKTL--GLSSIWALLAAFEDPLPIPTGATPFEGAFVKGVDSLSWMGN 324

Query: 61  NSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
           NS K   S+++  HCWT FSTAAYGKRNKVPQ
Sbjct: 325 NSAKLLGSKTNSPHCWTFFSTAAYGKRNKVPQ 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823103|emb|CAN66330.1| hypothetical protein VITISV_000598 [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 3/88 (3%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEK 64
           ++ SSG+PL+AR+MK +E  +     +LAA EDP  +    +F    + ++SWM NN++K
Sbjct: 558 LLASSGLPLVARQMKKLE--LSSIWALLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKK 614

Query: 65  FFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
              S S G HCWT FSTAA+GKRNKVPQ
Sbjct: 615 LLHSLSSGPHCWTFFSTAAFGKRNKVPQ 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443231|ref|XP_004139383.1| PREDICTED: uncharacterized protein LOC101219713 [Cucumis sativus]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 8/94 (8%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAAS---FKAPLLKAV---SWM 58
           ++ +SG+PLIAR+MK +E  +     +LAA EDP      A    F+   +K V   SWM
Sbjct: 269 LLSTSGLPLIARQMKRLE--LSSIWALLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWM 326

Query: 59  ENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
            NN++KF   Q DG HCWT  STAAYGK+NKVPQ
Sbjct: 327 ANNNKKFLNFQKDGPHCWTFLSTAAYGKQNKVPQ 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483109|ref|XP_004156495.1| PREDICTED: uncharacterized protein LOC101226129 [Cucumis sativus]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 8/94 (8%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAAS---FKAPLLKAV---SWM 58
           ++ +SG+PLIAR+MK +E  +     +LAA EDP      A    F+   +K V   SWM
Sbjct: 269 LLSTSGLPLIARQMKRLE--LSSIWALLAAFEDPLPFPDTAEKFPFEGAFVKGVDSLSWM 326

Query: 59  ENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
            NN++KF   Q DG HCWT  STAAYGK+NKVPQ
Sbjct: 327 ANNNKKFLNFQKDGPHCWTFLSTAAYGKQNKVPQ 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEK 64
           ++ SSG+PL+AR+MK +E  +     +LAA EDP  +    +F    + ++SWM NN++K
Sbjct: 243 LLASSGLPLVARQMKKLE--LSSIWALLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKK 299

Query: 65  FFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
              S   G HCWT FSTAA+GKRNKVPQ
Sbjct: 300 LLHSLGSGPHCWTFFSTAAFGKRNKVPQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEK 64
           ++ SSG+PL+AR+MK +E  +     +LAA EDP  +    +F    + ++SWM NN++K
Sbjct: 243 LLASSGLPLVARQMKKLE--LSSIWALLAAFEDPLPIPFEGAF-VKGVDSISWMANNTKK 299

Query: 65  FFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
              S   G HCWT FSTAA+GKRNKVPQ
Sbjct: 300 LLHSLGSGPHCWTFFSTAAFGKRNKVPQ 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108862915|gb|ABG22072.1| expressed protein [Oryza sativa Japonica Group]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLV---SAASFKAPLLKAV---SWM 58
           ++ +SG+PL+ R+MK ++  +     +LAA +DP  +    S  +F+   +K V   SWM
Sbjct: 225 LLSTSGLPLLTRQMKRLQ--LSSVWALLAAFQDPLPIPQTDSYGTFEGAFVKDVDSLSWM 282

Query: 59  ENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
            NN++K F  Q+    CWT FSTAAYGKRNKVPQ
Sbjct: 283 ANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQ 316

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617407|gb|EEE53539.1| hypothetical protein OsJ_36748 [Oryza sativa Japonica Group]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLV---SAASFKAPLLKAV---SWM 58
           ++ +SG+PL+ R+MK ++  +     +LAA +DP  +    S  +F+   +K V   SWM
Sbjct: 250 LLSTSGLPLLTRQMKRLQ--LSSVWALLAAFQDPLPIPQTDSYGTFEGAFVKDVDSLSWM 307

Query: 59  ENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
            NN++K F  Q+    CWT FSTAAYGKRNKVPQ
Sbjct: 308 ANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQ 341

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489414|ref|NP_001067194.1| Os12g0597400 [Oryza sativa Japonica Group] gi|77556443|gb|ABA99239.1| expressed protein [Oryza sativa Japonica Group] gi|113649701|dbj|BAF30213.1| Os12g0597400 [Oryza sativa Japonica Group] gi|215701342|dbj|BAG92766.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%)

Query: 5   VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLV---SAASFKAPLLKAV---SWM 58
           ++ +SG+PL+ R+MK ++  +     +LAA +DP  +    S  +F+   +K V   SWM
Sbjct: 266 LLSTSGLPLLTRQMKRLQ--LSSVWALLAAFQDPLPIPQTDSYGTFEGAFVKDVDSLSWM 323

Query: 59  ENNSEKFFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
            NN++K F  Q+    CWT FSTAAYGKRNKVPQ
Sbjct: 324 ANNTQKLFPLQTGRPECWTFFSTAAYGKRNKVPQ 357

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.833	0.174	0.420	2e-12

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 37/88 (42%), Positives = 57/88 (64%)

Query:     5 VVGSSGVPLIARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLKAVSWMENNSEK 64
             ++ +SG+PL+A++MK ++  +     +LAA +DP   V+        ++++SWM NNS K
Sbjct:   263 LLSASGLPLVAKQMKKLD--LSSIWALLAAFDDPLPTVNFEGAFVKGVESLSWMGNNSAK 320

Query:    65 FFCSQSDGAHCWTLFSTAAYGKRNKVPQ 92
                 ++   HCWT FSTAAYGK+NKVPQ
Sbjct:   321 LGNGRTP-PHCWTFFSTAAYGKQNKVPQ 347


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.134   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      102       102   0.00091  102 3  11 22  0.49    29
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.21u 0.12s 11.33t   Elapsed:  00:00:00
  Total cpu time:  11.21u 0.12s 11.33t   Elapsed:  00:00:00
  Start:  Mon May 20 15:35:54 2013   End:  Mon May 20 15:35:54 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_70000013 hypothetical protein (496 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.62
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	91.6

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.62  E-value=2.4e-16  Score=126.99  Aligned_cols=77  Identities=9%  Similarity=0.234  Sum_probs=65.9

Q ss_pred             CCCC--CChhH-HHHhhhhhhcccccceeeehhccCCcccccccccccCcee--eeeeeeeCCCCCCCCCCCCCceEEEE
Q 034179            5 VVGS--SGVPL-IARKMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLK--AVSWMENNSEKFFCSQSDGAHCWTLF   79 (102)
Q Consensus         5 ~~~~--~~~p~-lA~~~~~~~m~~~pcWalMaaF~~pl~~~~~~~~dgafv~--~LsWiA~NSsKPg~~rr~g~e~Wvlh   79 (102)
                      ||.+  -.+|. |...+..+.|.  |||++|++|++|++.|    ++|.|+.  +|.||+||.+|||  +....+.||+|
T Consensus       164 LLt~~~~~~p~~l~~~~a~V~y~--Pc~s~~lg~~q~l~~P----~~G~~vdg~~laWla~d~sK~g--~~p~~~~~vvq  235 (331)
T COG3380         164 LLTTDADDLPAALRAALADVVYA--PCWSAVLGYPQPLDRP----WPGNFVDGHPLAWLARDASKKG--HVPDGEIWVVQ  235 (331)
T ss_pred             hcCcccccchHHHHHhhccceeh--hHHHHHhcCCccCCCC----CCCcccCCCeeeeeeccccCCC--CCCcCceEEEE
Confidence            4444  34455 66677777899  9999999999999999    9999998  9999999999999  45567899999


Q ss_pred             eChhhHhhcC
Q 034179           80 STAAYGKRNK   89 (102)
Q Consensus        80 AT~~wS~~Hk   89 (102)
                      |+|+||++|=
T Consensus       236 asp~wSr~h~  245 (331)
T COG3380         236 ASPDWSREHL  245 (331)
T ss_pred             eCchHHHHhh
Confidence            9999999983

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=91.60  E-value=0.36  Score=37.52  Aligned_cols=60  Identities=7%  Similarity=0.003  Sum_probs=40.3

Q ss_pred             hhhhhhcccccceeeehhccCCcccccccccccCcee-eeeeeeeCCCCCCCCCCCCCceEEEEeChhh
Q 034179           17 KMKFVEDAIKFYMGVLAASEDPCLLVSAASFKAPLLK-AVSWMENNSEKFFCSQSDGAHCWTLFSTAAY   84 (102)
Q Consensus        17 ~~~~~~m~~~pcWalMaaF~~pl~~~~~~~~dgafv~-~LsWiA~NSsKPg~~rr~g~e~WvlhAT~~w   84 (102)
                      ....+++.  +|+.+++.|++|+..+.  .+-+. +. +..|+.+++.+++   ..+..+++++...++
T Consensus       267 ~l~~~~~~--~~~~v~l~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  327 (419)
T TIGR03467       267 LLTALGYS--PITTVHLRLDRAVRLPA--PMVGL-VGGLAQWLFDRGQLAG---EPGYLAVVISAARDL  327 (419)
T ss_pred             HHhhcCCc--ceEEEEEEeCCCcCCCC--Ceeee-cCCceeEEEECCcCCC---CCCEEEEEEecchhh
Confidence            34455677  99999999999974330  02221 22 7899999988887   556667777765444

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.75
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.49

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.75  E-value=4.4e-09  Score=79.04  Aligned_cols=70  Identities=9%  Similarity=0.068  Sum_probs=54.5

Q ss_pred             HHHhhhhhhcccccceeeehhccCC--cccccccccccCcee---eeeeeeeCCCCCCCCCCCCCceEEEEeChhhHhhc
Q 034179           14 IARKMKFVEDAIKFYMGVLAASEDP--CLLVSAASFKAPLLK---AVSWMENNSEKFFCSQSDGAHCWTLFSTAAYGKRN   88 (102)
Q Consensus        14 lA~~~~~~~m~~~pcWalMaaF~~p--l~~~~~~~~dgafv~---~LsWiA~NSsKPg~~rr~g~e~WvlhAT~~wS~~H   88 (102)
                      ..+.+..+.+.  |||+++++|+++  ++.+    ++|.++.   .|.|+++|++|||+...++..+||+|++.+|+++|
T Consensus       181 ~~~~l~~~~~~--~~~~v~l~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~  254 (342)
T 3qj4_A          181 QRQQLEAVSYS--SRYALGLFYEAGTKIDVP----WAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTY  254 (342)
T ss_dssp             HHHHHHTCCBC--CEEEEEEECSSCC--CCS----CSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHT
T ss_pred             HHHHHhcCCcc--ccEEEEEEECCCCccCCc----eeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHh
Confidence            46667778899  999999999976  5566    8887775   59999999999981111234699999999999876


Q ss_pred             C
Q 034179           89 K   89 (102)
Q Consensus        89 k   89 (102)
                      .
T Consensus       255 ~  255 (342)
T 3qj4_A          255 L  255 (342)
T ss_dssp             T
T ss_pred             h
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00