Citrus Sinensis ID: 034194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIERESNSHRHHHHHLPIILSFHSC
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEcccccccccEEEEEEEEHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
MQEDKKTMKVKKGWLAVQVGleeedggsrkfvipishlyhplFGQLLEKAREvygyntdgplrlpcsvddFLHLQWRIeresnshrhhhhhlpIILSFHSC
Flexible Loop (DISEMBL)
mqedkktmkvkkgwlavQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIERESNSHRHHHHhlpiilsfhsc
Low Complexity Region (SEG)
MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIERESNShrhhhhhLPIILSFHSC
Disordered region (IsUnstruct)
***********KGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRI***********************
Disordered Region (DISOPRED)
************GWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQ****************LPIILSFHSC
Disordered Region (DISEMBL)
***********KGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIERE********HHLPIILSFHSC
Disordered Region (DISPRO)
******TMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIERESN*********PI*L*F**C
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIERESNSHRHHHHHLPIILSFHSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.673	0.755	0.445	6e-09
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.673	0.739	0.432	1e-08
P33080	92	Auxin-induced protein X10	no	no	0.673	0.739	0.405	1e-07
P33079	93	Auxin-induced protein 10A	no	no	0.673	0.731	0.391	8e-07
P33081	82	Auxin-induced protein 15A	no	no	0.653	0.804	0.402	4e-06
P33082	82	Auxin-induced protein X15	no	no	0.653	0.804	0.361	4e-05

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 2  QEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGY-NTDG 60
          Q   K + V+KG+LAV VG +      R+FVIP+S+L  P F  LL +A E +GY + +G
Sbjct: 17 QASSKAVDVEKGYLAVYVGEK-----MRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNG 71

Query: 61 PLRLPCSVDDFLHL 74
           L +PCS D F H+
Sbjct: 72 GLTIPCSEDVFQHI 85

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 2  QEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYN-TDG 60
          +   K +   KG+LAV VG        ++FVIP+SHL  PLF  LL +A E +GY+   G
Sbjct: 17 EASSKVLDAPKGYLAVYVG-----ENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMG 71

Query: 61 PLRLPCSVDDFLHL 74
           L +PCS D F H+
Sbjct: 72 GLTIPCSEDLFQHI 85

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 6/74 (8%)

Query: 2  QEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYN-TDG 60
          Q   K+++V KG+L V VG +      R+F+IP+S+L  P F  LL +A E +GY+   G
Sbjct: 17 QASSKSVEVPKGYLVVYVGDK-----MRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMG 71

Query: 61 PLRLPCSVDDFLHL 74
           L +PC  D+FL +
Sbjct: 72 GLTIPCKEDEFLTV 85

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 2  QEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYN-TDG 60
          Q   K + V KG+ AV VG +      R+F IP+S+L  P F +LL +A E +GY+   G
Sbjct: 18 QAASKRVDVPKGYAAVYVGDK-----MRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMG 72

Query: 61 PLRLPCSVDDFLHL 74
           L +PC  ++FL++
Sbjct: 73 GLTIPCKEEEFLNV 86

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYN-TD 59
          +++  K     KG+LAV VG +      ++FVIP+S+L  P F  LL +A E +GY+   
Sbjct: 8  IRKASKAADAPKGYLAVYVGEK-----LKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPM 62

Query: 60 GPLRLPCSVDDF 71
          G L +PCS D F
Sbjct: 63 GGLTIPCSEDVF 74

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 1  MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYN-TD 59
          +++    +   KG+LAV VG +      ++FVIP+S++  P F  LL +A E +GY+   
Sbjct: 8  IRKASNAVDAPKGYLAVYVGEK-----MKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPM 62

Query: 60 GPLRLPCSVDDF 71
          G L +PCS + F
Sbjct: 63 GGLTIPCSEEVF 74

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
356507426	168	PREDICTED: uncharacterized protein LOC10	0.990	0.595	0.722	4e-34
225438339	103	PREDICTED: auxin-induced protein 6B-like	0.990	0.970	0.778	1e-33
224126755	105	SAUR family protein [Populus trichocarpa	0.970	0.933	0.776	3e-33
147774056	97	hypothetical protein VITISV_018522 [Viti	0.930	0.969	0.783	9e-32
224060467	106	SAUR family protein [Populus trichocarpa	0.990	0.943	0.730	6e-30
351723323	107	uncharacterized protein LOC100306049 [Gl	0.980	0.925	0.660	8e-28
357520185	107	Auxin-induced protein 6B [Medicago trunc	0.930	0.878	0.654	2e-27
351721577	101	uncharacterized protein LOC100306557 [Gl	0.930	0.930	0.673	6e-26
2995951	85	auxin-induced protein [Mesembryanthemum	0.772	0.917	0.705	2e-25
356527093	105	PREDICTED: auxin-induced protein 6B-like	0.930	0.895	0.619	3e-25

>gi|356507426|ref|XP_003522468.1| PREDICTED: uncharacterized protein LOC100809305 [Glycine max]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 91/108 (84%), Gaps = 8/108 (7%)

Query: 1   MQEDKKTMKVKKGWLAVQVGLEEED-GGS--RKFVIPISHLYHPLFGQLLEKAREVYGYN 57
           MQEDKK MKVKKG+LAVQVGLE++D GGS  ++FVIPIS+LYHPLF +LL+KAREVYGY+
Sbjct: 62  MQEDKK-MKVKKGFLAVQVGLEDDDEGGSSPQRFVIPISYLYHPLFKRLLDKAREVYGYH 120

Query: 58  TDGPLRLPCSVDDFLHLQWRIERES----NSHRHHHHHLPIILSFHSC 101
           TDGPL+LPCSVDDFLHL+WRI++ES    N H   HH LP  L FHSC
Sbjct: 121 TDGPLKLPCSVDDFLHLRWRIQKESTPNQNHHNQSHHRLPHALHFHSC 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438339|ref|XP_002272614.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 92/104 (88%), Gaps = 4/104 (3%)

Query: 1   MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDG 60
           MQE+KK MKVKKGWLAV+VGLEEEDGG ++FVIPIS+LYHPLF +LLEKA+EVYG++T G
Sbjct: 1   MQEEKK-MKVKKGWLAVEVGLEEEDGGFQRFVIPISYLYHPLFKRLLEKAQEVYGFHTAG 59

Query: 61  PLRLPCSVDDFLHLQWRIERESNS---HRHHHHHLPIILSFHSC 101
           PLRLPCSVDDFLHL+WRIERE+ S   H HHHHHL   LSFHSC
Sbjct: 60  PLRLPCSVDDFLHLRWRIERENGSHHNHHHHHHHLSGALSFHSC 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126755|ref|XP_002329465.1| SAUR family protein [Populus trichocarpa] gi|222870145|gb|EEF07276.1| SAUR family protein [Populus trichocarpa]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/103 (77%), Positives = 88/103 (85%), Gaps = 5/103 (4%)

Query: 2   QEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGP 61
           QEDKK  KVKKGWLAV+VGLEEEDGG ++FVIPIS+LYHPLF +LLEKA EVYGY+T GP
Sbjct: 5   QEDKK--KVKKGWLAVRVGLEEEDGGFQRFVIPISYLYHPLFKRLLEKAHEVYGYHTTGP 62

Query: 62  LRLPCSVDDFLHLQWRIERESNSHRHH---HHHLPIILSFHSC 101
           L LPCSVDDFLHL+WRIERES+ H HH   H HLP  LSFHSC
Sbjct: 63  LWLPCSVDDFLHLRWRIERESSHHSHHSNLHQHLPSSLSFHSC 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774056|emb|CAN76261.1| hypothetical protein VITISV_018522 [Vitis vinifera]

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 76/97 (78%), Positives = 86/97 (88%), Gaps = 3/97 (3%)

Query: 8   MKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCS 67
           MKVKKGWLAV+VGLEEEDGG ++FVIPIS+LYHPLF +LLEKA+EVYG++T GPLRLPCS
Sbjct: 1   MKVKKGWLAVEVGLEEEDGGFQRFVIPISYLYHPLFKRLLEKAQEVYGFHTAGPLRLPCS 60

Query: 68  VDDFLHLQWRIERESNS---HRHHHHHLPIILSFHSC 101
           VDDFLHL+WRIERE+ S   H HHHHHL   LSFHSC
Sbjct: 61  VDDFLHLRWRIERENGSHHNHHHHHHHLSGALSFHSC 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060467|ref|XP_002300214.1| SAUR family protein [Populus trichocarpa] gi|222847472|gb|EEE85019.1| SAUR family protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 89/104 (85%), Gaps = 4/104 (3%)

Query: 1   MQEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDG 60
           MQEDKK+ KVKKGWLAV+VGLE+ED G ++FVIPIS+LYHPLF +LLEKA EVYGY+T G
Sbjct: 4   MQEDKKS-KVKKGWLAVRVGLEDEDCGFQRFVIPISYLYHPLFKRLLEKAHEVYGYHTTG 62

Query: 61  PLRLPCSVDDFLHLQWRIERE---SNSHRHHHHHLPIILSFHSC 101
           PLR+PCSVDDFLHL+WRIE+E    + H HH HHLP  LSF+SC
Sbjct: 63  PLRVPCSVDDFLHLRWRIEKESSHHSHHSHHQHHLPSSLSFYSC 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723323|ref|NP_001236763.1| uncharacterized protein LOC100306049 [Glycine max] gi|255627391|gb|ACU14040.1| unknown [Glycine max]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 85/106 (80%), Gaps = 7/106 (6%)

Query: 3   EDKKTMKVKKGWLAVQVGLEEEDGGS---RKFVIPISHLYHPLFGQLLEKAREVYGYNTD 59
           +D+K MKVKKG+L VQVGLE+++ G    ++FVIPIS+L HPLF +LL+KAREVYGY+TD
Sbjct: 2   QDEKKMKVKKGFLGVQVGLEDDEEGGYSPQRFVIPISYLSHPLFKRLLDKAREVYGYHTD 61

Query: 60  GPLRLPCSVDDFLHLQWRIERESNS----HRHHHHHLPIILSFHSC 101
           GPL+LPCSVDDFLHL+WRIE+ES      H H HH LP  L FHSC
Sbjct: 62  GPLKLPCSVDDFLHLRWRIEKESAPNQNHHNHSHHRLPHALHFHSC 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520185|ref|XP_003630381.1| Auxin-induced protein 6B [Medicago truncatula] gi|355524403|gb|AET04857.1| Auxin-induced protein 6B [Medicago truncatula]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 82/107 (76%), Gaps = 13/107 (12%)

Query: 8   MKVKKGWLAVQVGLEEE----DG----GSRKFVIPISHLYHPLFGQLLEKAREVYGYNTD 59
           MKVKKGWLAVQVG EEE    DG     S++F+IPIS+LYHPLF  LL+KA E+YGYNTD
Sbjct: 1   MKVKKGWLAVQVGSEEEHSQVDGVTVSDSQRFLIPISYLYHPLFNHLLDKAYEIYGYNTD 60

Query: 60  GPLRLPCSVDDFLHLQWRIERESNSHRHHHHH-----LPIILSFHSC 101
           GPL+LPCSVDDFLHL+WRIE+ES  + HHH H     +P  L F+SC
Sbjct: 61  GPLKLPCSVDDFLHLRWRIEKESTPYHHHHQHHHHHLIPHALYFNSC 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721577|ref|NP_001236702.1| uncharacterized protein LOC100306557 [Glycine max] gi|255628871|gb|ACU14780.1| unknown [Glycine max]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 79/101 (78%), Gaps = 7/101 (6%)

Query: 8   MKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCS 67
           MKVKKGWLAVQV  E   GGS++FVIPIS+LYHPLF  LL+KA EVYGY+T+GPL+LPCS
Sbjct: 1   MKVKKGWLAVQVEEEGGGGGSQRFVIPISYLYHPLFKHLLDKAYEVYGYHTEGPLKLPCS 60

Query: 68  VDDFLHLQWRIERESNS-------HRHHHHHLPIILSFHSC 101
           VDDFLHL+WRIE+ES +       H HHH  LP  L FH+C
Sbjct: 61  VDDFLHLRWRIEKESTTHHHHQHHHHHHHRQLPHALYFHAC 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2995951|gb|AAC08401.1| auxin-induced protein [Mesembryanthemum crystallinum]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 73/85 (85%), Gaps = 7/85 (8%)

Query: 8  MKVKKGWLAVQVGLEEED---GG----SRKFVIPISHLYHPLFGQLLEKAREVYGYNTDG 60
          MKVKKG++AVQVGLE E+   GG    S++FVIPIS+LY+PLF  LL+KAREVYGY+ DG
Sbjct: 1  MKVKKGYMAVQVGLEVEEEYYGGTSEESQRFVIPISYLYNPLFVGLLDKAREVYGYHADG 60

Query: 61 PLRLPCSVDDFLHLQWRIERESNSH 85
          PL+LPCSVDDFL L+WRIERE++SH
Sbjct: 61 PLKLPCSVDDFLDLRWRIERENSSH 85

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527093|ref|XP_003532148.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 80/105 (76%), Gaps = 11/105 (10%)

Query: 8   MKVKKGWLAVQVGLEEEDGG---SRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRL 64
           MKVKKGWLAVQV  E E+ G   S++FVIPIS+L HPLF  LL+KA EVYGY+T+GPL+L
Sbjct: 1   MKVKKGWLAVQVEEETEEAGGVGSQRFVIPISYLCHPLFKHLLDKAYEVYGYHTEGPLKL 60

Query: 65  PCSVDDFLHLQWRIERESNS--------HRHHHHHLPIILSFHSC 101
           PCSVDDFLHL+WRI++ES++        + HHH  LP  L FH+C
Sbjct: 61  PCSVDDFLHLRWRIQKESSTHHHHNHNHNHHHHRQLPHALYFHAC 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2168611	142	AT5G53590 "AT5G53590" [Arabido	0.732	0.521	0.445	1.4e-14
TAIR|locus:2134598	122	AT4G00880 "AT4G00880" [Arabido	0.702	0.581	0.472	2.1e-13
TAIR|locus:2127555	160	AT4G22620 "AT4G22620" [Arabido	0.722	0.456	0.453	9.1e-13
TAIR|locus:2139124	157	AT4G12410 "AT4G12410" [Arabido	0.742	0.477	0.423	3.9e-12
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.693	0.514	0.444	5e-12
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.742	0.619	0.387	8.2e-12
TAIR|locus:2101771	170	AT3G60690 [Arabidopsis thalian	0.752	0.447	0.397	2.8e-11
TAIR|locus:2050832	162	SAUR36 "AT2G45210" [Arabidopsi	0.792	0.493	0.378	4.5e-11
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.643	0.406	0.485	5.2e-10
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.702	0.755	0.432	8.4e-10

TAIR|locus:2168611 AT5G53590 "AT5G53590" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 33/74 (44%), Positives = 52/74 (70%)

Query:    10 VKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVD 69
             V KG +A+ VG E+++ G  +FV+P+  L HPLF  LL++A + YG+  DGP+ +PC VD
Sbjct:    46 VPKGCVAIMVGHEDDEEGLHRFVVPLVFLSHPLFLDLLKEAEKEYGFKHDGPITIPCGVD 105

Query:    70 DFLHLQWRIERESN 83
             +F H+Q  I+ E++
Sbjct:   106 EFKHVQEVIDEETH 119

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2134598 AT4G00880 "AT4G00880" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 35/74 (47%), Positives = 51/74 (68%)

Query:     9 KVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSV 68
             KV KG LAV+VG  EE     +FVIP+ +  HPLFGQLL++A E +G+   G + +PC V
Sbjct:    27 KVPKGCLAVKVGQGEEQ---ERFVIPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHV 83

Query:    69 DDFLHLQWRIERES 82
             ++F ++Q  I+RE+
Sbjct:    84 EEFRYVQGLIDREN 97

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2127555 AT4G22620 "AT4G22620" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 34/75 (45%), Positives = 47/75 (62%)

Query:     4 DKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLR 63
             + KT  V +G L V VG   ED  +R+ V+P+ +  HPLFG+LLE+A  VYG+   G + 
Sbjct:    73 EPKTPTVPRGHLVVHVGESGED--TRRVVVPVIYFNHPLFGELLEQAERVYGFEQPGRIM 130

Query:    64 LPCSVDDFLHLQWRI 78
             +PC V DF  +Q RI
Sbjct:   131 IPCRVSDFEKVQMRI 145

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139124 AT4G12410 "AT4G12410" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 33/78 (42%), Positives = 51/78 (65%)

Query:     2 QEDKKTMKV-KKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDG 60
             ++ KK+ +V  +G L V VG  E D  +R+ V+P+ +  HPLFG+LLE+A  V+G++  G
Sbjct:    67 KDPKKSNRVVPRGHLVVHVG--ESDDDTRRVVVPVIYFNHPLFGELLEQAERVHGFDQPG 124

Query:    61 PLRLPCSVDDFLHLQWRI 78
              + +PC V DF  +Q RI
Sbjct:   125 RITIPCRVSDFEKVQLRI 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 32/72 (44%), Positives = 48/72 (66%)

Query:    10 VKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVD 69
             V KG LA++VG +EE+   ++FV+P+ +  HPLF QLL +A E YG+   G + +PC V+
Sbjct:    30 VPKGCLAIKVGSKEEE--KQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVE 87

Query:    70 DFLHLQWRIERE 81
              F ++Q  I RE
Sbjct:    88 VFRYVQDMINRE 99

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 31/80 (38%), Positives = 56/80 (70%)

Query:     5 KKTMKVK---KGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGP 61
             K+++KVK   KG LA++VG + E+   ++F++P+ +  HPLF QLL++A + YG++  G 
Sbjct:    16 KQSVKVKDVPKGCLAIKVGSQGEE--QQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGT 73

Query:    62 LRLPCSVDDFLHLQWRIERE 81
             + +PC V++F ++Q  I+ E
Sbjct:    74 ITIPCHVEEFRYVQALIDGE 93

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2101771 AT3G60690 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 31/78 (39%), Positives = 49/78 (62%)

Query:     5 KKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRL 64
             +K   V KG  AV +G  ++DG  ++ ++PI +  HPLFG+LL +A E +G++ +G + +
Sbjct:    83 EKPDPVPKGHSAVYIG--KKDGDFQRVLVPIVYFNHPLFGELLREAEEEFGFSQEGGITI 140

Query:    65 PCSVDDFLHLQWRIERES 82
             PC   DF  +Q RIE  S
Sbjct:   141 PCPYSDFKRVQTRIESGS 158

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2050832 SAUR36 "AT2G45210" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query:     3 EDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPL 62
             + KK   V +G LA+ VG  ++DG   + ++PI +  HPLFG+LL +A + YG+  +G +
Sbjct:    72 DHKKADPVPRGHLAIYVG--QKDGDCHRVLVPIVYFNHPLFGELLREAEKEYGFCHEGGI 129

Query:    63 RLPCSVDDFLHLQWRIERESNS 84
              +PC   DF  ++ RI   S+S
Sbjct:   130 TIPCLYSDFERVKTRIASGSSS 151

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:1900057 "positive regulation of leaf senescence" evidence=IMP

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 34/70 (48%), Positives = 43/70 (61%)

Query:    10 VKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVD 69
             V KG+LAV VG E      R+F+IP + L H LF  LLEKA E YG++  G L +PC V+
Sbjct:    79 VPKGYLAVYVGPE-----LRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVE 133

Query:    70 DFLHLQWRIE 79
              F +L   IE
Sbjct:   134 TFKYLLKCIE 143

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 32/74 (43%), Positives = 45/74 (60%)

Query:     2 QEDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTD-G 60
             Q  K+  +V KG +AV VG E E    ++FV+PIS+L HP F  LL +A E +G+N   G
Sbjct:    13 QSQKQQSRVPKGHVAVYVGEEMES--KKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIG 70

Query:    61 PLRLPCSVDDFLHL 74
              L +PC  + F+ L
Sbjct:    71 GLTIPCREETFVGL 84

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR26 SAUR family protein (77 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-27
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-09
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	3e-09
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-07

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 96.2 bits (240), Expect = 1e-27
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 10 VKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVD 69
          V KG  AV VG E     +R+FV+PIS+L HPLF +LL++A E +G++ DG L +PC V 
Sbjct: 35 VPKGHFAVYVGEE-----TRRFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVV 89

Query: 70 DFLHLQWRIE 79
           F HL W +E
Sbjct: 90 VFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 49.7 bits (118), Expect = 2e-09
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 10 VKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTD-GPLRLPCSV 68
          V KG +AV VG E+ +   ++FV+PIS L HP F + L +A E +G+N   G L +PC  
Sbjct: 35 VPKGHVAVYVG-EQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCRE 93

Query: 69 DDFLHL 74
          + FL L
Sbjct: 94 EVFLDL 99

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 49.7 bits (118), Expect = 3e-09
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 10  VKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGY-NTDGPLRLPCSV 68
           V KG +AV VG + E    ++FV+PIS+L HPLF + L +A E  G+ ++ G L +PC  
Sbjct: 39  VPKGHVAVYVGEQME---KKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCRE 95

Query: 69  DDFLHL 74
           + FLHL
Sbjct: 96  ESFLHL 101

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 44.4 bits (105), Expect = 3e-07
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 3  EDKKTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPL 62
          ED   + V KG   V VG         ++++PIS L HP F  LL++A E +G++ D  L
Sbjct: 33 EDGLPLDVPKGHFPVYVG-----ENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGL 87

Query: 63 RLPC 66
           +PC
Sbjct: 88 TIPC 91

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	99.98
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	88.35
PRK02315	233	adaptor protein; Provisional	85.8
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	83.38
PF05389	220	MecA: Negative regulator of genetic competence (Me	80.28

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.4e-34  Score=198.83  Aligned_cols=69  Identities=51%  Similarity=0.926  Sum_probs=65.6

Q ss_pred             ccCCCCCceEEEEeccccCCCCeeEEEEecCCCCchHHHHHHHHHHHhcCcCCCCCeEecccHHHHHHHHHHHh
Q 034194            6 KTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIE   79 (101)
Q Consensus         6 k~~~vpkG~~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~~LL~~AeEEfGf~~~G~L~IPC~~~~Fe~vl~~i~   79 (101)
                      +..++|+||+|||||+     +++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+|+
T Consensus        32 ~~~~vp~G~~~VyVG~-----~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   32 SESDVPKGHFAVYVGE-----ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             ccCCCCCCeEEEEeCc-----cceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            3578999999999996     47999999999999999999999999999999999999999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=197.24  Aligned_cols=68  Identities=37%  Similarity=0.642  Sum_probs=64.6

Q ss_pred             ccCCCCCceEEEEeccccCCCCeeEEEEecCCCCchHHHHHHHHHHHhcCcCCCCCeEecccHHHHHHHHHHH
Q 034194            6 KTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRI   78 (101)
Q Consensus         6 k~~~vpkG~~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~~LL~~AeEEfGf~~~G~L~IPC~~~~Fe~vl~~i   78 (101)
                      .+.+|||||||||||+     +++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+|
T Consensus        36 ~~~~vpkG~~aVyVG~-----~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         36 LPLDVPKGHFPVYVGE-----NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCCCCcEEEEECC-----CCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            4568999999999995     3799999999999999999999999999999999999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.98  E-value=9.2e-33  Score=193.99  Aligned_cols=71  Identities=39%  Similarity=0.680  Sum_probs=63.8

Q ss_pred             ccCCCCCceEEEEeccccCCCCeeEEEEecCCCCchHHHHHHHHHHHhcCcCC-CCCeEecccHHHHHHHHHH
Q 034194            6 KTMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNT-DGPLRLPCSVDDFLHLQWR   77 (101)
Q Consensus         6 k~~~vpkG~~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~~LL~~AeEEfGf~~-~G~L~IPC~~~~Fe~vl~~   77 (101)
                      .+.+|||||||||||++ ++.+++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++++..
T Consensus        31 ~~~~VPkGh~aVyVGe~-~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         31 SSDHVPKGHVAVYVGEQ-IEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             ccCCCCCCeEEEEECCC-CCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            44689999999999963 33457999999999999999999999999999997 6999999999999999863

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=1e-31  Score=189.48  Aligned_cols=70  Identities=41%  Similarity=0.698  Sum_probs=63.6

Q ss_pred             cCCCCCceEEEEeccccCCCCeeEEEEecCCCCchHHHHHHHHHHHhcCcCC-CCCeEecccHHHHHHHHHHHh
Q 034194            7 TMKVKKGWLAVQVGLEEEDGGSRKFVIPISHLYHPLFGQLLEKAREVYGYNT-DGPLRLPCSVDDFLHLQWRIE   79 (101)
Q Consensus         7 ~~~vpkG~~aVyVG~e~~~e~~kRfvVpv~~L~hP~F~~LL~~AeEEfGf~~-~G~L~IPC~~~~Fe~vl~~i~   79 (101)
                      ..+|||||+|||||++   ++++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++++..-+
T Consensus        36 ~~~vpkGh~aVYVG~~---~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~~  106 (108)
T PLN03219         36 SGLVPKGHVAVYVGEQ---MEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSHQ  106 (108)
T ss_pred             CCCCCCCeEEEEECCC---CCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhhh
Confidence            3579999999999963   358999999999999999999999999999996 699999999999999998643

>PRK02899 adaptor protein; Provisional

Probab=88.35  E-value=0.44  Score=36.26  Aligned_cols=24  Identities=29%  Similarity=0.796  Sum_probs=21.2

Q ss_pred             hHHHHHHHHHHHhcCcCCCCCeEe
Q 034194           41 PLFGQLLEKAREVYGYNTDGPLRL   64 (101)
Q Consensus        41 P~F~~LL~~AeEEfGf~~~G~L~I   64 (101)
                      -+|.++|++|..|+||..+|+|+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccCCeEEE
Confidence            467778999999999998999986

>PRK02315 adaptor protein; Provisional

Probab=85.80  E-value=0.65  Score=36.05  Aligned_cols=24  Identities=21%  Similarity=0.544  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHHhcCcCCCCCeEe
Q 034194           41 PLFGQLLEKAREVYGYNTDGPLRL   64 (101)
Q Consensus        41 P~F~~LL~~AeEEfGf~~~G~L~I   64 (101)
                      -+|.++|++|..|+||..+|+|+|
T Consensus        39 ~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         39 EFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHhccccCcccCCeEEE
Confidence            579999999999999999999986

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=83.38  E-value=1.4  Score=28.46  Aligned_cols=53  Identities=19%  Similarity=0.142  Sum_probs=41.3

Q ss_pred             eEEEEecCCCC-ch--HHHHHHHHHHHhcCcCCCCCeEecccHHHHHHHHHHHhhc
Q 034194           29 RKFVIPISHLY-HP--LFGQLLEKAREVYGYNTDGPLRLPCSVDDFLHLQWRIERE   81 (101)
Q Consensus        29 kRfvVpv~~L~-hP--~F~~LL~~AeEEfGf~~~G~L~IPC~~~~Fe~vl~~i~~~   81 (101)
                      ++|.++.+.|. +|  .|..|++.......-+.+|.+-|-++...|++|+..+...
T Consensus         8 ~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    8 TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            89999999887 44  7888888652222224679999999999999999999984

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation

Probab=80.28  E-value=0.54  Score=35.56  Aligned_cols=25  Identities=40%  Similarity=0.748  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHhcCcCCCCCeEe
Q 034194           40 HPLFGQLLEKAREVYGYNTDGPLRL   64 (101)
Q Consensus        40 hP~F~~LL~~AeEEfGf~~~G~L~I   64 (101)
                      +-+|.++|++|.+|+||..+|+|+|
T Consensus        38 e~fF~~ileea~~e~~F~~~~~l~~   62 (220)
T PF05389_consen   38 EEFFYSILEEADEEHGFENDGPLTF   62 (220)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            4579999999999999998999986

It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00