Citrus Sinensis ID: 034199


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRHQG
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccHHHHHccHHHHHHHHHccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccEEccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHcc
MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQqglkgnsyrLLFGDLKENSIELKeakarplslddniairVNPFLHKLVRILScglvrhqg
melplksiALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLrqqglkgnsyrLLFGDLKENSIELKeakarplslddniAIRVNPFLHKLVRILScglvrhqg
MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRHQG
*****KSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLV****
**LPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLK*****************DNIAIRVNPFLHKLVRILSCGLVRHQG
MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRHQG
*ELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRHQG
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGLVRHQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query101 2.2.26 [Sep-21-2011]
Q9SHG5 519 Cytochrome P450 72C1 OS=A no no 0.841 0.163 0.458 2e-18
Q05047 524 Secologanin synthase OS=C N/A no 0.871 0.167 0.438 8e-17
O48786 520 Cytochrome P450 734A1 OS= no no 0.722 0.140 0.312 1e-05
Q6Z6D6 557 Cytochrome P450 734A2 OS= no no 0.702 0.127 0.342 3e-05
Q69XM6 538 Cytochrome P450 734A4 OS= no no 0.683 0.128 0.366 8e-05
B9X287 542 Cytochrome P450 734A6 OS= no no 0.683 0.127 0.319 0.0008
>sp|Q9SHG5|C72C1_ARATH Cytochrome P450 72C1 OS=Arabidopsis thaliana GN=CYP72C1 PE=2 SV=2 Back     alignment and function desciption
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 59/85 (69%)

Query: 5  LKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELK 64
          ++ + L   ++ +L W WR +NWVWLRPK+LEK+L++QG  GNSYR+L GD++E++   +
Sbjct: 7  VRKVFLIGFLILILNWVWRAVNWVWLRPKRLEKYLKKQGFSGNSYRILMGDMRESNQMDQ 66

Query: 65 EAKARPLSLDDNIAIRVNPFLHKLV 89
           A + PL LD +   R+ PFLH  V
Sbjct: 67 VAHSLPLPLDADFLPRMMPFLHHTV 91




Atypical cytochrome P450 involved in brassinosteroids (BRs) inactivation and regulation of BRs homeostasis. Does not possess carbon 26 hydroxylase activity and may inactivate BRs by hydroxylation of carbons other than C-26. Acts in association with CYP734A1 to inactivate BRs and modulate photomorphogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|Q05047|C72A1_CATRO Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1 Back     alignment and function description
>sp|O48786|C734A_ARATH Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z6D6|C7342_ORYSJ Cytochrome P450 734A2 OS=Oryza sativa subsp. japonica GN=CYP734A2 PE=2 SV=1 Back     alignment and function description
>sp|Q69XM6|C7344_ORYSJ Cytochrome P450 734A4 OS=Oryza sativa subsp. japonica GN=CYP734A4 PE=2 SV=1 Back     alignment and function description
>sp|B9X287|C7346_ORYSJ Cytochrome P450 734A6 OS=Oryza sativa subsp. japonica GN=CYP734A6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query101
224105979 518 cytochrome P450 [Populus trichocarpa] gi 0.891 0.173 0.611 4e-24
224119126 518 cytochrome P450 [Populus trichocarpa] gi 0.891 0.173 0.6 1e-23
224119134 518 cytochrome P450 [Populus trichocarpa] gi 0.891 0.173 0.6 1e-23
224113635104 cytochrome P450 [Populus trichocarpa] gi 0.891 0.865 0.6 1e-23
22411914696 predicted protein [Populus trichocarpa] 0.891 0.937 0.588 3e-23
359494197 526 PREDICTED: secologanin synthase-like [Vi 0.831 0.159 0.595 2e-22
359494591 391 PREDICTED: secologanin synthase-like [Vi 0.831 0.214 0.595 2e-22
147795635 518 hypothetical protein VITISV_015554 [Viti 0.821 0.160 0.566 2e-22
147816915 299 hypothetical protein VITISV_032612 [Viti 0.821 0.277 0.542 4e-22
147858656193 hypothetical protein VITISV_020336 [Viti 0.811 0.424 0.597 6e-22
>gi|224105979|ref|XP_002333744.1| cytochrome P450 [Populus trichocarpa] gi|222838385|gb|EEE76750.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 67/90 (74%)

Query: 1  MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENS 60
          M + + SI ++IV V VL WAWRVLNWVW RPKK+E+ LRQQG  G  YRLLFGD KENS
Sbjct: 1  MTVTVTSILVSIVYVAVLRWAWRVLNWVWFRPKKVERCLRQQGFAGKPYRLLFGDWKENS 60

Query: 61 IELKEAKARPLSLDDNIAIRVNPFLHKLVR 90
            LKEA+ +P+ L D +  RV PFLH+LV+
Sbjct: 61 DMLKEARTKPIGLSDALLPRVMPFLHQLVK 90




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119126|ref|XP_002331331.1| cytochrome P450 [Populus trichocarpa] gi|222873914|gb|EEF11045.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119134|ref|XP_002331333.1| cytochrome P450 [Populus trichocarpa] gi|222873916|gb|EEF11047.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113635|ref|XP_002332522.1| cytochrome P450 [Populus trichocarpa] gi|222832634|gb|EEE71111.1| cytochrome P450 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119146|ref|XP_002331336.1| predicted protein [Populus trichocarpa] gi|222873919|gb|EEF11050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494197|ref|XP_002265784.2| PREDICTED: secologanin synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359494591|ref|XP_003634812.1| PREDICTED: secologanin synthase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147795635|emb|CAN67740.1| hypothetical protein VITISV_015554 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147816915|emb|CAN71060.1| hypothetical protein VITISV_032612 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858656|emb|CAN80407.1| hypothetical protein VITISV_020336 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query101
TAIR|locus:2089521 512 CYP72A15 ""cytochrome P450, fa 0.831 0.164 0.476 6.6e-18
TAIR|locus:2089596 512 CYP72A13 ""cytochrome P450, fa 0.831 0.164 0.452 1.7e-17
TAIR|locus:2089586 512 CYP72A11 ""cytochrome P450, fa 0.831 0.164 0.440 6.3e-17
TAIR|locus:2089561 514 CYP72A10 ""cytochrome P450, fa 0.891 0.175 0.422 2.2e-16
TAIR|locus:2089526 512 CYP72A7 ""cytochrome P450, fam 0.801 0.158 0.395 7.4e-16
TAIR|locus:2089621 512 CYP72A14 ""cytochrome P450, fa 0.920 0.181 0.410 1.5e-15
TAIR|locus:2089531 515 CYP72A8 ""cytochrome P450, fam 0.831 0.163 0.4 3.3e-14
TAIR|locus:2089546 508 CYP72A9 ""cytochrome P450, fam 0.821 0.163 0.422 8.6e-14
UNIPROTKB|Q69XM6 538 CYP734A4 "Cytochrome P450 734A 0.811 0.152 0.333 2e-06
TAIR|locus:2041399 572 CYP709B2 ""cytochrome P450, fa 0.792 0.139 0.369 6e-06
TAIR|locus:2089521 CYP72A15 ""cytochrome P450, family 72, subfamily A, polypeptide 15"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 225 (84.3 bits), Expect = 6.6e-18, P = 6.6e-18
 Identities = 40/84 (47%), Positives = 57/84 (67%)

Query:     1 MELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENS 60
             ME+ + S+ +++V+  V  W WR L WVW +PK LE +LR+QGL G  Y  L GDLK+N 
Sbjct:     1 MEISVASVTISVVLAVVSWWIWRTLQWVWFKPKMLEHYLRRQGLAGTPYTPLVGDLKKNF 60

Query:    61 IELKEAKARPLSLDDNIAIRVNPF 84
               L EA+++PL L D+I+ RV P+
Sbjct:    61 TMLSEARSKPLKLTDDISPRVVPY 84




GO:0005506 "iron ion binding" evidence=IEA
GO:0009055 "electron carrier activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0019825 "oxygen binding" evidence=ISS
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2089596 CYP72A13 ""cytochrome P450, family 72, subfamily A, polypeptide 13"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089586 CYP72A11 ""cytochrome P450, family 72, subfamily A, polypeptide 11"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089561 CYP72A10 ""cytochrome P450, family 72, subfamily A, polypeptide 10"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089526 CYP72A7 ""cytochrome P450, family 72, subfamily A, polypeptide 7"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089621 CYP72A14 ""cytochrome P450, family 72, subfamily A, polypeptide 14"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089531 CYP72A8 ""cytochrome P450, family 72, subfamily A, polypeptide 8"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089546 CYP72A9 ""cytochrome P450, family 72, subfamily A, polypeptide 9"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69XM6 CYP734A4 "Cytochrome P450 734A4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2041399 CYP709B2 ""cytochrome P450, family 709, subfamily B, polypeptide 2"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
CYP72A47
cytochrome P450 (518 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query101
PLN02290 516 PLN02290, PLN02290, cytokinin trans-hydroxylase 4e-05
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase Back     alignment and domain information
 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 10 LTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKAR 69
          L I +  +L  A+  ++  +L P++++K + +QG++G   R L G++ + S  + ++ ++
Sbjct: 10 LVIFLTLLLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSK 69

Query: 70 PL-SLDDNIAIRVNP 83
           + S+  +I  R+ P
Sbjct: 70 DMDSIHHDIVGRLLP 84


Length = 516

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 101
PLN02290 516 cytokinin trans-hydroxylase 99.28
PTZ00404 482 cytochrome P450; Provisional 97.01
KOG0157 497 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfami 96.86
PLN02302 490 ent-kaurenoic acid oxidase 94.34
PLN00168 519 Cytochrome P450; Provisional 93.91
PLN02183 516 ferulate 5-hydroxylase 93.81
COG3898 531 Uncharacterized membrane-bound protein [Function u 93.62
KOG0158 499 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subf 93.03
PLN03234 499 cytochrome P450 83B1; Provisional 92.97
PLN02687 517 flavonoid 3'-monooxygenase 91.4
PLN02966 502 cytochrome P450 83A1 90.37
PLN02196 463 abscisic acid 8'-hydroxylase 90.21
PLN02738 633 carotene beta-ring hydroxylase 89.92
PLN03112 514 cytochrome P450 family protein; Provisional 89.11
PF07219108 HemY_N: HemY protein N-terminus; InterPro: IPR0108 87.2
KOG0156 489 consensus Cytochrome P450 CYP2 subfamily [Secondar 87.12
PLN02774 463 brassinosteroid-6-oxidase 86.43
PLN02394 503 trans-cinnamate 4-monooxygenase 85.96
>PLN02290 cytokinin trans-hydroxylase Back     alignment and domain information
Probab=99.28  E-value=6.2e-11  Score=95.28  Aligned_cols=80  Identities=19%  Similarity=0.402  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCC-CCCCccccccchHHHHHHHhcCc
Q 034199           17 VLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLS-LDDNIAIRVNPFLHKLVRILSCG   95 (101)
Q Consensus        17 ~~~~~~~~l~~lw~~P~rl~r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~-~sHDi~prV~P~~~~w~~~YG~~   95 (101)
                      +.-++++.++.+.|+|+|+++.++++|+.||++.+++||+.++.....++..++++ ..+|+..+..+++.+|.++||+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i   96 (516)
T PLN02290         17 LLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKR   96 (516)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCe
Confidence            44467788899999999999999999999999999999999998766666666666 46888888999999999999997


Q ss_pred             c
Q 034199           96 L   96 (101)
Q Consensus        96 ~   96 (101)
                      +
T Consensus        97 ~   97 (516)
T PLN02290         97 F   97 (516)
T ss_pred             E
Confidence            6



>PTZ00404 cytochrome P450; Provisional Back     alignment and domain information
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism] Back     alignment and domain information
>PLN02302 ent-kaurenoic acid oxidase Back     alignment and domain information
>PLN00168 Cytochrome P450; Provisional Back     alignment and domain information
>PLN02183 ferulate 5-hydroxylase Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN03234 cytochrome P450 83B1; Provisional Back     alignment and domain information
>PLN02687 flavonoid 3'-monooxygenase Back     alignment and domain information
>PLN02966 cytochrome P450 83A1 Back     alignment and domain information
>PLN02196 abscisic acid 8'-hydroxylase Back     alignment and domain information
>PLN02738 carotene beta-ring hydroxylase Back     alignment and domain information
>PLN03112 cytochrome P450 family protein; Provisional Back     alignment and domain information
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins Back     alignment and domain information
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02774 brassinosteroid-6-oxidase Back     alignment and domain information
>PLN02394 trans-cinnamate 4-monooxygenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query101
3nxu_A 485 Cytochrome P450 3A4; alpha beta protein, cytochrom 96.22
3s79_A 503 Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD 94.33
3ld6_A 461 Lanosterol 14-alpha demethylase; cytochrome P450, 89.53
3k9v_A 482 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho 88.2
2cd8_A 436 Cytochrome P450 monooxygenase; oxidoreductase, PIK 86.45
3e6i_A 476 CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, mono 83.0
3swz_A 494 Steroid 17-alpha-hydroxylase/17,20 lyase; cytochro 82.87
2hi4_A 495 Cytochrome P450 1A2; CYP1A2, monooxygenase, drug m 82.35
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A* Back     alignment and structure
Probab=96.22  E-value=0.0025  Score=48.49  Aligned_cols=42  Identities=10%  Similarity=0.100  Sum_probs=33.1

Q ss_pred             HHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199           37 KFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL   96 (101)
Q Consensus        37 r~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~   96 (101)
                      ...+++|+.||++-.++||+.++.+                  ....++.+|.++||+++
T Consensus         9 ~~~k~~~~PGP~~~PliGn~~~~~~------------------~~~~~~~~~~~~yG~i~   50 (485)
T 3nxu_A            9 GLFKKLGIPGPTPLPFLGNILSYHK------------------GFCMFDMECHKKYGKVW   50 (485)
T ss_dssp             THHHHHTCCCCCCBTTTBTGGGGGG------------------CHHHHHHHHHHHHCSEE
T ss_pred             hHHhhCCCCCCCCcCeecCcHHhhc------------------ChHHHHHHHHHHcCCeE
Confidence            4678999999999999999866521                  12446789999999875



>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A* Back     alignment and structure
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A* Back     alignment and structure
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A* Back     alignment and structure
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A* Back     alignment and structure
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A* Back     alignment and structure
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A* Back     alignment and structure
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query101
d1tqna_ 472 Mammalian cytochrome P450 3a4 {Human (Homo sapiens 94.41
d3czha1 463 Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapie 80.39
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cytochrome P450
superfamily: Cytochrome P450
family: Cytochrome P450
domain: Mammalian cytochrome P450 3a4
species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41  E-value=0.011  Score=42.23  Aligned_cols=41  Identities=10%  Similarity=0.112  Sum_probs=31.4

Q ss_pred             HHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCccccccchHHHHHHHhcCcc
Q 034199           38 FLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVRILSCGL   96 (101)
Q Consensus        38 ~Lr~QGI~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~sHDi~prV~P~~~~w~~~YG~~~   96 (101)
                      .++|-||-||++=.++||+-++.+                  ...-++.+|.++||++|
T Consensus         5 ~~~~~~iPGP~~~P~iG~~~~~~~------------------~~~~~~~~~~~kyG~i~   45 (472)
T d1tqna_           5 LFKKLGIPGPTPLPFLGNILSYHK------------------GFCMFDMECHKKYGKVW   45 (472)
T ss_dssp             HHHHTTCCCCCCBTTTBTGGGGGG------------------CHHHHHHHHHHHHCSEE
T ss_pred             chhhcCCCCCCCcCceeEHHHhhC------------------CHHHHHHHHHHHhCCEE
Confidence            467889999998778899866532                  22347889999999875



>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure