Citrus Sinensis ID: 034201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN
Secondary Structure (PSIPRED)
cccccHHHHcccccEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccEEEEEccEEEEEEcccccHcHcccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKVRSSVKKMCEFCKIIKRRGRVYVICSANlkhkqrqgmstfaneglipftsvetnvkqeiapnhniRAGLAslipkkheswsIIYGWRASLASLLFKQGN
Flexible Loop (DISEMBL)
mkvrssvkkmcefckiikrrgrVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN
Low Complexity Region (SEG)
MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN
Disordered region (IsUnstruct)
********KMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLF****
Disordered Region (DISOPRED)
***RSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANE**********************************ESWSIIYGWRASLASLLFKQ**
Disordered Region (DISEMBL)
********KMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN
Disordered Region (DISPRO)
***RSSVKKMCEFCKIIKRRGRVYVICSANL************************************RAGLASLIPKKHESWSIIYGWRASLASLLFKQG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
B2G8V5	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.842	5e-11
A5VLI2	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.842	5e-11
Q74L67	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.842	6e-11
Q03PY0	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.815	8e-11
Q046A3	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.842	8e-11
P73300	38	50S ribosomal protein L36	N/A	no	0.376	1.0	0.789	1e-10
B3WAJ5	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.763	1e-10
Q035A6	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.763	1e-10
Q03ED9	39	50S ribosomal protein L36	yes	no	0.376	0.974	0.815	1e-10
Q38UT4	38	50S ribosomal protein L36	yes	no	0.376	1.0	0.763	2e-10

>sp|B2G8V5|RL36_LACRJ 50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVKKMCE CKI+KR GRV VICSAN KHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

Lactobacillus reuteri (strain JCM 1112) (taxid: 557433)

>sp|A5VLI2|RL36_LACRD 50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpmJ PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVKKMCE CKI+KR GRV VICSAN KHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

Lactobacillus reuteri (strain DSM 20016) (taxid: 557436)

>sp|Q74L67|RL36_LACJO 50S ribosomal protein L36 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpmJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVK MCE CKIIKR+GRV VICSAN KHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKIIKRQGRVMVICSANPKHKQRQG 38

Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) (taxid: 257314)

>sp|Q03PY0|RL36_LACBA 50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpmJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVK MCE CK+IKR+GRV VICSAN KHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38

Lactobacillus brevis (strain ATCC 367 / JCM 1170) (taxid: 387344)

>sp|Q046A3|RL36_LACGA 50S ribosomal protein L36 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpmJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 32/38 (84%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVK MCE CKIIKR GRV VICSAN KHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKIIKRHGRVMVICSANPKHKQRQG 38

Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) (taxid: 324831)

>sp|P73300|RL36_SYNY3 50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpmJ PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 35/38 (92%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+SVKKMC+ C++I+RRGRV VICSAN KHKQRQG
Sbjct: 1  MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|B3WAJ5|RL36_LACCB 50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) GN=rpmJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVKKMCE CK+++R+GRV +ICSAN KHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

Lactobacillus casei (strain BL23) (taxid: 543734)

>sp|Q035A6|RL36_LACC3 50S ribosomal protein L36 OS=Lactobacillus casei (strain ATCC 334) GN=rpmJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVKKMCE CK+++R+GRV +ICSAN KHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

Lactobacillus casei (strain ATCC 334) (taxid: 321967)

>sp|Q03ED9|RL36_PEDPA 50S ribosomal protein L36 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpmJ PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVK MCE CKII+R+GRV VICSAN KHKQRQG
Sbjct: 1  MKVRPSVKTMCEHCKIIRRKGRVMVICSANPKHKQRQG 38

Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) (taxid: 278197)

>sp|Q38UT4|RL36_LACSS 50S ribosomal protein L36 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpmJ PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR SVK MCE CK+IKR+GRV +IC+AN KHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIKRKGRVMIICAANPKHKQRQG 38

Lactobacillus sakei subsp. sakei (strain 23K) (taxid: 314315)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
147794982	100	hypothetical protein VITISV_039227 [Viti	0.990	1.0	0.722	1e-35
225445521	100	PREDICTED: uncharacterized protein LOC10	0.990	1.0	0.722	3e-35
224144216	132	predicted protein [Populus trichocarpa]	0.960	0.734	0.663	6e-31
118481183	97	unknown [Populus trichocarpa]	0.960	1.0	0.663	8e-31
224090431	97	predicted protein [Populus trichocarpa]	0.960	1.0	0.663	4e-30
449465743	100	PREDICTED: uncharacterized protein LOC10	0.990	1.0	0.623	4e-29
449465741	117	PREDICTED: uncharacterized protein LOC10	0.990	0.854	0.623	6e-29
388516553	99	unknown [Lotus japonicus]	0.970	0.989	0.65	3e-28
388501868	99	unknown [Lotus japonicus]	0.970	0.989	0.65	4e-28
357478111	101	50S ribosomal protein L36 [Medicago trun	0.970	0.970	0.617	6e-27

>gi|147794982|emb|CAN71764.1| hypothetical protein VITISV_039227 [Vitis vinifera]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQE 60
           MKVRSSVKKMCE+C+ +KRRGRVYV+C+AN KHKQRQGMSTFA+EG +P  S E N KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  IAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           I+ NH ++ GLAS+IPKK E  S++YGWRASLASLLFKQ N
Sbjct: 61  ISXNHRLQGGLASIIPKKPEP-SMMYGWRASLASLLFKQXN 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445521|ref|XP_002285234.1| PREDICTED: uncharacterized protein LOC100250810 isoform 2 [Vitis vinifera] gi|297738962|emb|CBI28207.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQE 60
           MKVRSSVKKMCE+C+ +KRRGRVYV+C+AN KHKQRQGMSTFA+EG +P  S E N KQE
Sbjct: 1   MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61  IAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           I+ NH ++ GLAS+IPKK E  S++YGWRASLASLLFKQ N
Sbjct: 61  ISRNHRLQGGLASIIPKKPEP-SMMYGWRASLASLLFKQVN 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144216|ref|XP_002325223.1| predicted protein [Populus trichocarpa] gi|222866657|gb|EEF03788.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 4/101 (3%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQE 60
           MKVRSSVKKMCEFC+I+KRRGR+YVICS+N KHKQRQG +TFA  GLI   S ET     
Sbjct: 36  MKVRSSVKKMCEFCQIVKRRGRIYVICSSNPKHKQRQGFATFAYSGLI---SAETTAPPR 92

Query: 61  IAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           I P+ ++  GLASL+PKK+E  S +YGWRA L+S LFKQGN
Sbjct: 93  IVPSQSMGIGLASLLPKKYEP-STMYGWRAGLSSFLFKQGN 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481183|gb|ABK92543.1| unknown [Populus trichocarpa]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 4/101 (3%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQE 60
           MKVRSSVKKMCEFC+I+KRRGR+YVICS+N KHKQRQG +TFA  GLI   S ET     
Sbjct: 1   MKVRSSVKKMCEFCQIVKRRGRIYVICSSNPKHKQRQGFATFAYSGLI---SAETTAPPR 57

Query: 61  IAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           I P+ ++  GLASL+PKK+E  S +YGWRA L+S LFKQGN
Sbjct: 58  IVPSQSMGIGLASLLPKKYEP-STMYGWRAGLSSFLFKQGN 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090431|ref|XP_002308985.1| predicted protein [Populus trichocarpa] gi|222854961|gb|EEE92508.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 79/101 (78%), Gaps = 4/101 (3%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQE 60
           MKVRSSVKKMCEFC+I+KRRGR+YVIC++N KHKQRQG ST A  GLI   S ET+  Q 
Sbjct: 1   MKVRSSVKKMCEFCQIVKRRGRIYVICNSNPKHKQRQGFSTLAYGGLI---SAETSAPQG 57

Query: 61  IAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           I P+ +   GLA+LIPKKHE  S +YGWRA L+S +FKQGN
Sbjct: 58  IIPSQSTGVGLATLIPKKHEP-SAMYGWRADLSSFVFKQGN 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465743|ref|XP_004150587.1| PREDICTED: uncharacterized protein LOC101223220 isoform 2 [Cucumis sativus] gi|449465745|ref|XP_004150588.1| PREDICTED: uncharacterized protein LOC101223220 isoform 3 [Cucumis sativus] gi|449465747|ref|XP_004150589.1| PREDICTED: uncharacterized protein LOC101223220 isoform 4 [Cucumis sativus] gi|449523620|ref|XP_004168821.1| PREDICTED: uncharacterized LOC101223220 isoform 2 [Cucumis sativus] gi|449523622|ref|XP_004168822.1| PREDICTED: uncharacterized LOC101223220 isoform 3 [Cucumis sativus] gi|449523624|ref|XP_004168823.1| PREDICTED: uncharacterized LOC101223220 isoform 4 [Cucumis sativus]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQE 60
           MKVRSSVKKMCEFC+ +KR+GRVY+ CS+N KHKQRQG+STFA+EG  P     T VKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQE 60

Query: 61  IAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           I P+ ++R GLASLIP+K+E  ++  GWR  LAS+L K+ N
Sbjct: 61  ILPSQSLRTGLASLIPQKNEP-TMFLGWRMGLASILLKKHN 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465741|ref|XP_004150586.1| PREDICTED: uncharacterized protein LOC101223220 isoform 1 [Cucumis sativus] gi|449523618|ref|XP_004168820.1| PREDICTED: uncharacterized LOC101223220 isoform 1 [Cucumis sativus]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETNVKQE 60
           MKVRSSVKKMCEFC+ +KR+GRVY+ CS+N KHKQRQG+STFA+EG  P     T VKQE
Sbjct: 18  MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQE 77

Query: 61  IAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           I P+ ++R GLASLIP+K+E  ++  GWR  LAS+L K+ N
Sbjct: 78  ILPSQSLRTGLASLIPQKNEP-TMFLGWRMGLASILLKKHN 117

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516553|gb|AFK46338.1| unknown [Lotus japonicus]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 79/100 (79%), Gaps = 2/100 (2%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVE-TNVKQ 59
          MKVRSSVKKMCEFCK +KRRGRVYVICSAN KHKQRQGMSTFANEG     S+E ++ KQ
Sbjct: 1  MKVRSSVKKMCEFCKTVKRRGRVYVICSANPKHKQRQGMSTFANEGPSNPVSLEISSAKQ 60

Query: 60 EIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQ 99
          EI     +R G AS+ P++H S S++YGWR  L+S+LF++
Sbjct: 61 EIRLPLTLRPGPASIFPRRH-SLSMLYGWRVGLSSILFRK 99

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501868|gb|AFK39000.1| unknown [Lotus japonicus]

 Score =  128 bits (321), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 79/100 (79%), Gaps = 2/100 (2%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVE-TNVKQ 59
          MKVRSSVKKMCEFCK +KRRGRVYVICSAN KHKQRQGMSTFANEG     S+E ++ KQ
Sbjct: 1  MKVRSSVKKMCEFCKTVKRRGRVYVICSANPKHKQRQGMSTFANEGPSNPVSLEISSAKQ 60

Query: 60 EIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQ 99
          EI     +R G AS+ P++H S S++YGWR  L+S+LF++
Sbjct: 61 EIRLPLTLRPGPASIFPQRH-SLSMLYGWRVGLSSILFRK 99

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478111|ref|XP_003609341.1| 50S ribosomal protein L36 [Medicago truncatula] gi|355510396|gb|AES91538.1| 50S ribosomal protein L36 [Medicago truncatula] gi|388510640|gb|AFK43386.1| unknown [Medicago truncatula]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 77/102 (75%), Gaps = 4/102 (3%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTSVETN---V 57
           MKVRSSVKKMCE+C+ IKR+GRVY++C+AN KHKQRQGMSTFA E      SVE +    
Sbjct: 1   MKVRSSVKKMCEYCRTIKRKGRVYIMCTANPKHKQRQGMSTFAYEAPSHQLSVEISSSCA 60

Query: 58  KQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQ 99
            QEI P H  R GLAS+IP++H S S++YGWR  LAS+L K+
Sbjct: 61  AQEIKPLHTSRTGLASIIPQRH-SLSMLYGWRVGLASILSKK 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2149299	103	AT5G20180 [Arabidopsis thalian	0.990	0.970	0.605	7.3e-27
ASPGD|ASPL0000017226	109	AN10477 [Emericella nidulans (	0.376	0.348	0.684	2e-10
UNIPROTKB|P0A7Q6	38	rpmJ "50S ribosomal subunit pr	0.376	1.0	0.710	1.1e-09
CGD|CAL0001889	123	orf19.760 [Candida albicans (t	0.366	0.300	0.675	2.2e-09
SGD|S000007224	93	RTC6 "Protein involved in tran	0.366	0.397	0.621	2.2e-09
UNIPROTKB|P0C458	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	3.6e-09
UNIPROTKB|P0C459	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	3.6e-09
UNIPROTKB|P62727	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	3.6e-09
UNIPROTKB|Q6ENE0	37	rpl36 "50S ribosomal protein L	0.366	1.0	0.657	3.6e-09
TIGR_CMR|BA_0134	37	BA_0134 "ribosomal protein L36	0.366	1.0	0.684	5.9e-09

TAIR|locus:2149299 AT5G20180 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 63/104 (60%), Positives = 75/104 (72%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQGMSTFANEGLIPFTS-VETNVKQ 59
             MKVRSSVKKMCEFCK +KRRGRVYVICS+N KHKQRQG S+FA EG+ P     E    Q
Sbjct:     1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query:    60 EIA--PNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
             E+   P   + AGLASL+ K+    +  +GWR+ LAS+LFKQGN
Sbjct:    61 ELVRLPGQGVSAGLASLLHKRPMP-TAYFGWRSGLASILFKQGN 103

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

ASPGD|ASPL0000017226 AN10477 [Emericella nidulans (taxid:162425)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 26/38 (68%), Positives = 32/38 (84%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             MK RSSVK++CE CK ++R+ RVY+ICS N KHKQRQG
Sbjct:    71 MKTRSSVKRLCEGCKPVRRKNRVYIICSKNPKHKQRQG 108

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P0A7Q6 rpmJ "50S ribosomal subunit protein L36" [Escherichia coli K-12 (taxid:83333)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             MKVR+SVKK+C  CKI+KR G + VICSA  KHKQRQG
Sbjct:     1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

CGD|CAL0001889 orf19.760 [Candida albicans (taxid:5476)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query:     2 KVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             KVR+SVK MC+ C ++KR+GRVYV C +N KHKQRQG
Sbjct:    87 KVRTSVKCMCKDCYLVKRKGRVYVYCKSNGKHKQRQG 123

GO:0005739 "mitochondrion" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

SGD|S000007224 RTC6 "Protein involved in translation" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query:     2 KVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             KVR+SVKK C  C +++R+GRVY+ C +N KHKQRQG
Sbjct:    57 KVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG 93

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IGI;IMP

GO:0005739 "mitochondrion" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=ISA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|P0C458 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza sativa (taxid:4530)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             MK+R+SV+K+C  C++I+RRGR+ VICS N KHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C459 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             MK+R+SV+K+C  C++I+RRGR+ VICS N KHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P62727 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             MK+R+SV+K+C  C++I+RRGR+ VICS N KHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

UNIPROTKB|Q6ENE0 rpl36 "50S ribosomal protein L36, chloroplastic" [Oryza nivara (taxid:4536)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 25/38 (65%), Positives = 33/38 (86%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             MK+R+SV+K+C  C++I+RRGR+ VICS N KHKQRQG
Sbjct:     1 MKIRASVRKICTKCRLIRRRGRIRVICS-NPKHKQRQG 37

GO:0009536 "plastid" evidence=IC

TIGR_CMR|BA_0134 BA_0134 "ribosomal protein L36" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query:     1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
             MKVR SVK +CE CK+I+RRG+V VIC  N KHKQ+QG
Sbjct:     1 MKVRPSVKPICEKCKVIRRRGKVMVICE-NPKHKQKQG 37

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q035A6	RL36_LACC3	No assigned EC number	0.7631	0.3762	1.0	yes	no
Q7V9Y2	RL36_PROMA	No assigned EC number	0.7368	0.3762	1.0	yes	no
Q5LXT4	RL36_STRT1	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q03IH4	RL36_STRTD	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q1JE36	RL36_STRPB	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q04G63	RL36_OENOB	No assigned EC number	0.7631	0.3762	0.9743	yes	no
A2RNN0	RL36_LACLM	No assigned EC number	0.7368	0.3762	1.0	yes	no
Q839E1	RL36_ENTFA	No assigned EC number	0.7631	0.3762	1.0	yes	no
C1CAN5	RL36_STRP7	No assigned EC number	0.7368	0.3762	1.0	yes	no
A5VLI2	RL36_LACRD	No assigned EC number	0.8421	0.3762	0.9743	yes	no
C1CPB1	RL36_STRZT	No assigned EC number	0.7368	0.3762	1.0	yes	no
B9DSX3	RL36_STRU0	No assigned EC number	0.7105	0.3762	1.0	yes	no
C1CIC0	RL36_STRZP	No assigned EC number	0.7368	0.3762	1.0	yes	no
Q1GBJ5	RL36_LACDA	No assigned EC number	0.7894	0.3762	1.0	yes	no
Q1J8Z0	RL36_STRPF	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q5M2D6	RL36_STRT2	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q02W48	RL36_LACLS	No assigned EC number	0.7368	0.3762	1.0	yes	no
B3WAJ5	RL36_LACCB	No assigned EC number	0.7631	0.3762	1.0	yes	no
Q046A3	RL36_LACGA	No assigned EC number	0.8421	0.3762	1.0	yes	no
B2G8V5	RL36_LACRJ	No assigned EC number	0.8421	0.3762	0.9743	yes	no
B5XJ59	RL36_STRPZ	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q04BZ2	RL36_LACDB	No assigned EC number	0.7894	0.3762	1.0	yes	no
P0DE51	RL36_STRPQ	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q88XW3	RL36_LACPL	No assigned EC number	0.7631	0.3762	0.9743	yes	no
Q5FM68	RL36_LACAC	No assigned EC number	0.7894	0.3762	1.0	yes	no
Q1JJ38	RL36_STRPD	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q38UT4	RL36_LACSS	No assigned EC number	0.7631	0.3762	1.0	yes	no
B1I8M1	RL36_STRPI	No assigned EC number	0.7368	0.3762	1.0	yes	no
Q1JNZ4	RL36_STRPC	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q03PY0	RL36_LACBA	No assigned EC number	0.8157	0.3762	0.9743	yes	no
P0A493	RL36_LACLA	No assigned EC number	0.7368	0.3762	1.0	yes	no
C1CC29	RL36_STRZJ	No assigned EC number	0.7368	0.3762	1.0	yes	no
P0A496	RL36_STRR6	No assigned EC number	0.7368	0.3762	1.0	yes	no
P0A495	RL36_STRPN	No assigned EC number	0.7368	0.3762	1.0	yes	no
A2RC37	RL36_STRPG	No assigned EC number	0.7105	0.3762	1.0	yes	no
B4U523	RL36_STREM	No assigned EC number	0.7105	0.3762	1.0	yes	no
Q03ED9	RL36_PEDPA	No assigned EC number	0.8157	0.3762	0.9743	yes	no
P66308	RL36_STRMU	No assigned EC number	0.7105	0.3762	1.0	yes	no
A9BCM7	RL36_PROM4	No assigned EC number	0.7368	0.3762	1.0	yes	no
A3CK87	RL36_STRSV	No assigned EC number	0.7368	0.3762	1.0	yes	no
Q74L67	RL36_LACJO	No assigned EC number	0.8421	0.3762	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016911001	RecName- Full=Ribosomal protein L36; (100 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00015322001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (167 aa)	•			•			•		0.815
	GSVIVG00019749001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)	•			•	•				0.769
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)	•			•					0.730
	GSVIVG00035173001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (116 aa)	•			•	•				0.724
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•					0.714
	GSVIVG00003076001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (340 aa)	•			•					0.703
	GSVIVG00026031001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)	•			•	•				0.685
	GSVIVG00035276001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence;; DNA-dependent RNA p [...] (310 aa)	•			•					0.653
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)	•			•	•				0.650
	GSVIVG00035271001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)	•			•	•				0.646

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam00444	38	pfam00444, Ribosomal_L36, Ribosomal protein L36	8e-20
COG0257	38	COG0257, RpmJ, Ribosomal protein L36 [Translation,	9e-19
PRK00465	37	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewe	1e-17
TIGR01022	37	TIGR01022, rpmJ_bact, ribosomal protein L36, bacte	1e-14
PRK00831	41	PRK00831, rpmJ, 50S ribosomal protein L36; Validat	1e-09
CHL00029	26	CHL00029, rpl36, ribosomal protein L36	4e-08

>gnl|CDD|201231 pfam00444, Ribosomal_L36, Ribosomal protein L36

 Score = 74.5 bits (184), Expect = 8e-20
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVRSSVKK C+ CKI++R+GRVYVIC  N +HKQRQG
Sbjct: 1  MKVRSSVKKRCKDCKIVRRKGRVYVICKTNPRHKQRQG 38

Length = 38

>gnl|CDD|223335 COG0257, RpmJ, Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

 Score = 72.0 bits (177), Expect = 9e-19
 Identities = 28/38 (73%), Positives = 32/38 (84%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+SVKK C  CKI++R+GRVYVIC  N KHKQRQG
Sbjct: 1  MKVRASVKKRCRDCKIVRRKGRVYVICKKNPKHKQRQG 38

Length = 38

>gnl|CDD|179039 PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed

 Score = 69.2 bits (170), Expect = 1e-17
 Identities = 28/38 (73%), Positives = 32/38 (84%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+SVKK+CE CK+IKR+G V VIC  N KHKQRQG
Sbjct: 1  MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG 37

Length = 37

>gnl|CDD|130094 TIGR01022, rpmJ_bact, ribosomal protein L36, bacterial type

 Score = 61.3 bits (149), Expect = 1e-14
 Identities = 29/38 (76%), Positives = 32/38 (84%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+SVKK+CE CKIIKR+G V VIC  N KHKQRQG
Sbjct: 1  MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37

Proteins found by this model occur exclusively in bacteria and organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 37

>gnl|CDD|179138 PRK00831, rpmJ, 50S ribosomal protein L36; Validated

 Score = 49.2 bits (118), Expect = 1e-09
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 1  MKVRSSVKKMCEF---CKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+S+K +      C++++R+GRVYVI   N + K RQG
Sbjct: 1  MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG 41

Length = 41

>gnl|CDD|176970 CHL00029, rpl36, ribosomal protein L36

 Score = 44.9 bits (107), Expect = 4e-08
 Identities = 16/26 (61%), Positives = 25/26 (96%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVI 26
          MK+R+SV+K+CE C++I+RRGR++VI
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIFVI 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF00444	38	Ribosomal_L36: Ribosomal protein L36; InterPro: IP	99.91
KOG4122	38	consensus Mitochondrial/chloroplast ribosomal prot	99.91
PRK00465	37	rpmJ 50S ribosomal protein L36; Reviewed	99.91
COG0257	38	RpmJ Ribosomal protein L36 [Translation, ribosomal	99.91
TIGR01022	37	rpmJ_bact ribosomal protein L36, bacterial type. P	99.9
PRK00831	41	rpmJ 50S ribosomal protein L36; Validated	99.89
CHL00029	26	rpl36 ribosomal protein L36	99.42

>PF00444 Ribosomal_L36: Ribosomal protein L36; InterPro: IPR000473 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.91  E-value=1.4e-25  Score=135.50  Aligned_cols=38  Identities=63%  Similarity=1.139  Sum_probs=33.9

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|||++|++|++|+|+|||||||++|||||||||
T Consensus         1 MKVr~slk~~c~~C~~vrR~gr~~Vick~nprhKqrQg   38 (38)
T PF00444_consen    1 MKVRSSLKKRCKDCYVVRRKGRLYVICKKNPRHKQRQG   38 (38)
T ss_dssp             -BESSS-S-SSSTSEEEEETTEEEEEESSSGGGCEEE-
T ss_pred             CcchhhhhhcCCCCceEEECCEEEEECCCCCchhccCC
Confidence            99999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L36 is the smallest protein from the large subunit of the prokaryotic ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [] can be grouped into: bacterial L36; algal and plant chloroplast L36; Cyanelle L36. L36 is a small basic and cysteine-rich protein of 37 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBO_6 2HGU_8 2HGJ_8 1DGZ_A 1DFE_A 2HGQ_8 1VSP_b 1VSA_b 3PIP_4 1VOU_6 ....

>KOG4122 consensus Mitochondrial/chloroplast ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.3e-25  Score=136.53  Aligned_cols=38  Identities=61%  Similarity=1.117  Sum_probs=37.5

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|||++|++||+|+|+||+||||++|||||||||
T Consensus         1 fKvk~svkk~C~~Cy~VrRrgR~yViC~~~prHKqrqg   38 (38)
T KOG4122|consen    1 FKVKASVKKRCKDCYLVRRRGRVYVICKTHPRHKQRQG   38 (38)
T ss_pred             CchhHHHHHhhhhceEEEEcccEEEEcCCCcchhhhcC
Confidence            89999999999999999999999999999999999997

>PRK00465 rpmJ 50S ribosomal protein L36; Reviewed

Probab=99.91  E-value=3.8e-25  Score=133.44  Aligned_cols=37  Identities=76%  Similarity=1.180  Sum_probs=36.5

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|+||||| +|||||||||
T Consensus         1 MKVr~SvKk~c~~C~vvrR~gr~~Vic-~nprhKqRQg   37 (37)
T PRK00465          1 MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG   37 (37)
T ss_pred             CcchhhhhhcCCCCEEEEECCEEEEEc-CCCCcccccC
Confidence            999999999999999999999999999 7999999998

>COG0257 RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=4.1e-25  Score=134.41  Aligned_cols=38  Identities=74%  Similarity=1.209  Sum_probs=37.7

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|+|++|++|++|||+|++||||++|||||||||
T Consensus         1 MKV~~SvK~~c~~CkivrRkGrv~VIck~~prhKqrQg   38 (38)
T COG0257           1 MKVRASVKKRCRDCKIVRRKGRVYVICKKNPKHKQRQG   38 (38)
T ss_pred             CccccccccccCCceEEEecCEEEEEeCCCcchhhhcC
Confidence            99999999999999999999999999999999999998

>TIGR01022 rpmJ_bact ribosomal protein L36, bacterial type

Probab=99.90  E-value=1.6e-24  Score=130.78  Aligned_cols=37  Identities=78%  Similarity=1.189  Sum_probs=36.2

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      ||||+|||++|++|++|||+|+|||||+ |||||||||
T Consensus         1 MKVr~SvKk~c~~C~vvrR~grv~Vick-~prhKqRQG   37 (37)
T TIGR01022         1 MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG   37 (37)
T ss_pred             CcchhhhhhhCcCCeEEEECCEEEEEeC-CCCccccCC
Confidence            9999999999999999999999999997 799999998

Proteins found by this model occur exclusively in bacteria and organelles.

>PRK00831 rpmJ 50S ribosomal protein L36; Validated

Probab=99.89  E-value=4.5e-24  Score=131.26  Aligned_cols=38  Identities=50%  Similarity=0.871  Sum_probs=36.5

Q ss_pred             Ccccchhhhc---CCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKM---CEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~---C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|||++   |++|++|||+|++||||++|||||||||
T Consensus         1 MKVr~SvKk~~~~~~~c~vvrR~grv~Vick~nprhKqRQG   41 (41)
T PRK00831          1 MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG   41 (41)
T ss_pred             CchhhhhhhhhccCCCCEEEEeCCEEEEEcCCCCcccccCC
Confidence            9999999994   5999999999999999999999999998

>CHL00029 rpl36 ribosomal protein L36

Probab=99.42  E-value=8.2e-14  Score=78.62  Aligned_cols=26  Identities=62%  Similarity=1.308  Sum_probs=25.5

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEE
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVI   26 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyVi   26 (101)
                      ||||+|||++|++|++|||+|++|||
T Consensus         1 MKVr~Svkk~c~~c~ivrR~g~v~Vi   26 (26)
T CHL00029          1 MKIRASVRKICEKCRLIRRRGRIFVI   26 (26)
T ss_pred             CcccccccccCCCCEEEeecCEEEEC
Confidence            99999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
3bbo_6	104	Homology Model For The Spinach Chloroplast 50s Subu		3e-27
1nwx_4	37	Complex Of The Large Ribosomal Subunit From Deinoco		4e-10
1nkw_4	36	Crystal Structure Of The Large Ribosomal Subunit Fr		2e-09
2j03_9	37	Structure Of The Thermus Thermophilus 70s Ribosome		5e-09
1p85_4	38	Real Space Refined Coordinates Of The 50s Subunit F		6e-09
1pnu_4	35	Crystal Structure Of A Streptomycin Dependent Ribos		1e-08
3fin_9	35	T. Thermophilus 70s Ribosome In Complex With Mrna,		1e-07

>pdb|3BBO|6 Chain 6, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 104

Iteration: 1
 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 75/105 (71%), Gaps = 5/105 (4%)
Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQ-GMSTFANEGLIPFT-SVETNVK 58
           MKVRSSVKKMCEFCK +KRRGRVYVICS+N KHKQRQ G S+FA EG+ P     E    
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIAS 60
Query: 59  QEIA--PNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
           QE+   P   + AGLASL+ K+    +  +GWR+ LAS+LFKQGN
Sbjct: 61  QELVRLPGQGVSAGLASLLHKRPMP-TAYFGWRSGLASILFKQGN 104

>pdb|1NWX|4 Chain 4, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 37

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVRSSVKKMC+ CK+++R GRV VICS N+KHKQRQG
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37

>pdb|1NKW|4 Chain 4, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 36

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%), Gaps = 1/37 (2%)
Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQ 37
          MKVRSSVKKMC+ CK+++R GRV VICS N+KHKQRQ
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQ 36

>pdb|1P85|4 Chain 4, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 38

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+SVKK+C  CKI+KR G + VICSA  KHKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

>pdb|1PNU|4 Chain 4, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 35

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%), Gaps = 1/36 (2%)
Query: 2  KVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQ 37
          KVRSSVKKMC+ CK+++R GRV VICS N+KHKQRQ
Sbjct: 1  KVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQ 35

>pdb|3FIN|9 Chain 9, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 35

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Query: 2  KVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQ 37
          KVR+SVK++C+ CK+I+R GRVYVIC  N KHKQRQ
Sbjct: 1  KVRASVKRICDKCKVIRRHGRVYVICE-NPKHKQRQ 35

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3bbo_6	104	Ribosomal protein L36; large ribosomal subunit, sp	8e-38
3r8s_4	38	50S ribosomal protein L36; protein biosynthesis, R	5e-19
2zjr_4	37	50S ribosomal protein L36; ribosome, large ribosom	6e-18

>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 104

 Score =  121 bits (305), Expect = 8e-38
 Identities = 61/105 (58%), Positives = 74/105 (70%), Gaps = 5/105 (4%)

Query: 1   MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG-MSTFANEGLIP---FTSVETN 56
           MKVRSSVKKMCEFCK +KRRGRVYVICS+N KHKQRQG  S+FA EG+ P   F     +
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIAS 60

Query: 57  VKQEIAPNHNIRAGLASLIPKKHESWSIIYGWRASLASLLFKQGN 101
            +    P   + AGLASL+ K+    +  +GWR+ LAS+LFKQGN
Sbjct: 61  QELVRLPGQGVSAGLASLLHKRPMP-TAYFGWRSGLASILFKQGN 104

>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ... Length = 38

 Score = 72.1 bits (177), Expect = 5e-19
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+SVKK+C  CKI+KR G + VICSA  KHKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ... Length = 37

 Score = 69.4 bits (170), Expect = 6e-18
 Identities = 29/38 (76%), Positives = 34/38 (89%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVRSSVKKMC+ CK+++R GRV VICS N+KHKQRQG
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3bbo_6	104	Ribosomal protein L36; large ribosomal subunit, sp	100.0
3r8s_4	38	50S ribosomal protein L36; protein biosynthesis, R	99.92
2zjr_4	37	50S ribosomal protein L36; ribosome, large ribosom	99.9

>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=8.5e-54  Score=303.28  Aligned_cols=100  Identities=60%  Similarity=0.950  Sum_probs=37.8

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC-cccccccC--CCCC-cccccccccccccccccccccccccc
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG-MSTFANEG--LIPF-TSVETNVKQEIAPNHNIRAGLASLIP   76 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG-~~t~a~~~--~~~p-~~~e~~~~~~i~~~~~~~~g~as~~~   76 (101)
                      ||||+|||++|++|++|||+||||||||+||||||||| |+|+|+++  |+|| .|.|++++++|.|+|++++||||++|
T Consensus         1 MKVRaSlKk~C~~CkvVRRkGRvyVICK~NPRHKQRQG~~~T~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gla~~~~   80 (104)
T 3bbo_6            1 MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGGFSSFAYEGITPSPLFAEPIASQELVRLPGQGVSAGLASLLH   80 (104)
T ss_dssp             CBCCSCCCCCSTTBCCEEETTEEEBCBSSCGGGCBCCC------------------------------------------
T ss_pred             CccchhhHHhhccCeEEEECCEEEEEcCCCcchhhhccceeeeeccCCCCCCccccccccccccccccccccccceeccc
Confidence            99999999999999999999999999999999999999 99999999  7777 55566669999999999999999999


Q ss_pred             CCCCcchhhcchhhhhhhhhhhcCC
Q 034201           77 KKHESWSIIYGWRASLASLLFKQGN  101 (101)
Q Consensus        77 ~~~~~~s~~~~wr~glas~l~k~~n  101 (101)
                      +||| |||+||||+|||||||+|||
T Consensus        81 ~~~~-~s~~~~wr~glas~l~~~~~  104 (104)
T 3bbo_6           81 KRPM-PTAYFGWRSGLASILFKQGN  104 (104)
T ss_dssp             -------------------------
T ss_pred             cCcC-cchhhCchhhHHHHhhccCC
Confidence            9999 99999999999999999998

>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...

Probab=99.92  E-value=1.4e-26  Score=139.57  Aligned_cols=38  Identities=71%  Similarity=1.111  Sum_probs=37.7

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|+|||||++|||||||||
T Consensus         1 MKVr~Svk~~c~~C~vvrR~grv~Vick~nPrhKqRQG   38 (38)
T 3r8s_4            1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG   38 (38)
T ss_dssp             CEECSCCCCCSTTEEEEEETTEEEEEETTCGGGCEECC
T ss_pred             CccchhhhhhccCCeEEEECCEEEEEeCCCCchhhcCC
Confidence            99999999999999999999999999999999999998

>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...

Probab=99.90  E-value=1.8e-25  Score=133.89  Aligned_cols=37  Identities=78%  Similarity=1.301  Sum_probs=36.6

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|||||||+ |||||||||
T Consensus         1 MKVr~slk~~c~~C~vvrR~grv~Vick-nPrhKqrQg   37 (37)
T 2zjr_4            1 MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG   37 (37)
T ss_dssp             CEECSSCCCCSTTCCCEECSSCEEECCS-SSTTCEECC
T ss_pred             CccchhHHHhhcCCEEEEECCEEEEECC-CCcccccCC
Confidence            9999999999999999999999999999 999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d2qam41	38	g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherich	3e-20
d2zjr41	37	g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococc	1e-18

>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]} Length = 38

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Escherichia coli [TaxId: 562]

 Score = 74.2 bits (183), Expect = 3e-20
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVR+SVKK+C  CKI+KR G + VICSA  KHKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG 38

>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]} Length = 37

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 70.0 bits (172), Expect = 1e-18
 Identities = 29/38 (76%), Positives = 34/38 (89%), Gaps = 1/38 (2%)

Query: 1  MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG 38
          MKVRSSVKKMC+ CK+++R GRV VICS N+KHKQRQG
Sbjct: 1  MKVRSSVKKMCDNCKVVRRHGRVLVICS-NVKHKQRQG 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d2qam41	38	Ribosomal protein L36 {Escherichia coli [TaxId: 56	99.92
d2zjr41	37	Ribosomal protein L36 {Deinococcus radiodurans [Ta	99.91

>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.3e-27  Score=141.80  Aligned_cols=38  Identities=71%  Similarity=1.111  Sum_probs=37.7

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      |||++|||++|++|++|||+|+|||||++|||||||||
T Consensus         1 MKVr~svKk~C~~C~ivrR~Grv~ViCk~nPrHKQRQG   38 (38)
T d2qam41           1 MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG   38 (38)
T ss_dssp             CCCCSCCCCCSTTBCCCCBTTBCCCCBSSCGGGCCCCC
T ss_pred             CccchhhhhhCCCCeEEEecCEEEEEeCCCCcccccCC
Confidence            99999999999999999999999999999999999998

>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Ribosomal protein L36
superfamily: Ribosomal protein L36
family: Ribosomal protein L36
domain: Ribosomal protein L36
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.91  E-value=4.6e-26  Score=135.56  Aligned_cols=37  Identities=76%  Similarity=1.291  Sum_probs=36.2

Q ss_pred             CcccchhhhcCCCceEEEeCCEEEEEcCCCCCcccccC
Q 034201            1 MKVRSSVKKMCEFCKIIKRRGRVYVICSANLKHKQRQG   38 (101)
Q Consensus         1 MKVRsSlKk~C~~C~vVRRkGRlyViCk~NPRHKQRQG   38 (101)
                      ||||+|||++|++|++|||+|+||||| +|||||||||
T Consensus         1 MKVr~SvKk~C~~C~virR~g~v~ViC-~npkHKQRQG   37 (37)
T d2zjr41           1 MKVRSSVKKMCDNCKVVRRHGRVLVIC-SNVKHKQRQG   37 (37)
T ss_dssp             CEECSSCCCCSTTCCCEECSSCEEECC-SSSTTCEECC
T ss_pred             CccchhhhhhccCceEEEeCCEEEEEe-CCCCccccCC
Confidence            999999999999999999999999999 5999999998