Citrus Sinensis ID: 034219

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MRHVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAALEPKIVVIMAGDDHPTRIARPSASTS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccEEEccccccc
Coil and Loop (DISEMBL)
mrhvatdltapsgaglvqwnsplpymfgGLLLVFGVIAVALMFLACchdkssitgpssgdqkdeksaeaidppaalepkIVVIMagddhptriarpsasts
Flexible Loop (DISEMBL)
mrhvatdltapsgaglvqWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEaidppaalepKIVVIMAGDDHPtriarpsasts
Low Complexity Region (SEG)
MRHVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAALEPKIVVIMAGDDHPTRIARPSASTS
Disordered region (IsUnstruct)
************GAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCH*******************************IVVIM*****************
Disordered Region (DISOPRED)
******************WNSPLPYMFGGLLLVFGVIAVALMFLAC********************************KIVVIMAGDDHPTRIARPSA***
Disordered Region (DISEMBL)
MRHVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSS****************AIDPPAALEPKIVVIMAGDDHPTR*********
Disordered Region (DISPRO)
***************LVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDK***********************AALEPKIVVIMAGDDHPTRIARP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRHVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAALEPKIVVIMAGDDHPTRIARPSASTS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q8S8A0	156	Protein GLUTAMINE DUMPER	yes	no	0.801	0.519	0.452	2e-13
O81775	158	Protein GLUTAMINE DUMPER	no	no	0.782	0.5	0.451	3e-12
Q9FHH5	148	Protein GLUTAMINE DUMPER	no	no	0.980	0.668	0.373	6e-11
Q9SW07	129	Protein GLUTAMINE DUMPER	no	no	0.821	0.643	0.348	1e-07
Q3E965	131	Protein GLUTAMINE DUMPER	no	no	0.772	0.595	0.407	4e-06
Q3E8L0	97	Protein GLUTAMINE DUMPER	no	no	0.851	0.886	0.301	7e-05

>sp|Q8S8A0|GDU4_ARATH Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana GN=GDU4 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 19  WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAID---PPAA 75
           W+SP+PY+FGGL  + G+IA AL+ LAC + + S +G  SG++ DE+           AA
Sbjct: 33  WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSGVKAASAA 92

Query: 76  LEPKIVVIMAGDDHPTRIARPSAS 99
            E K++VIMAGDD P  +A P+A+
Sbjct: 93  CEEKVLVIMAGDDLPRFLATPAAN 116

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.
Arabidopsis thaliana (taxid: 3702)

>sp|O81775|GDU1_ARATH Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana GN=GDU1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 19  WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKD-EKSAEAIDPPA--A 75
           W+SP+PY+FGGL  + G+IA AL+ LAC + + S +G   G   D EK + + D  A  A
Sbjct: 30  WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSGDKAANGA 89

Query: 76  LEPKIVVIMAGDDHPTRIARPS 97
            E K +VIMAG+D P  +A P+
Sbjct: 90  YEEKFLVIMAGEDLPRYLATPA 111

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Required the interaction with the RING-type E3 ubiquitin-protein ligase LOG2 to fulfill its function. Plays a role in the Gln export at hydathodes, at xylem parenchyma into xylem sap and from mesophyll into leaf apoplasm. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHH5|GDU3_ARATH Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 2   RHVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQ 61
            +V  + T   G     W+SP+PY+FGGL  + G+IA AL+ LAC + + S       +Q
Sbjct: 11  ENVEGNRTTMGGGPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQ 70

Query: 62  KDEKSAEAID--------PPAALEPKIVVIMAGDDHPTRIARPSAST 100
             E+  E  D         P AL  K +VIMAG+  PT +A PS  T
Sbjct: 71  SRERDLEVGDVKPDKTAVKPVALPEKFLVIMAGNVKPTYLATPSVKT 117

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators. Acts upstream genes involved in the salicylic acid (SA) pathway and in the geminivirus-host interaction.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW07|GDU2_ARATH Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana GN=GDU2 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 19  WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGP---SSGDQKDEKSAEAIDPPAA 75
           W+SP+PY+FGGL  +  +I VAL+ LAC + + S +      +GD     +         
Sbjct: 28  WHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDDAKPDNDTNKTKHTE 87

Query: 76  LEPKIVVIMAGDDHPTRIARPSASTS 101
           +  K +VIMAGD  PT +A P+  + 
Sbjct: 88  MPEKFLVIMAGDVRPTYLATPATRSE 113

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E965|GDU5_ARATH Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana GN=GDU5 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 19  WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAALEP 78
           W +P+PY+FGGL  + G+IA AL+ LAC + +  ++  +  ++K  +S E +    A E 
Sbjct: 28  WRTPVPYLFGGLAAMLGLIAFALLLLACSYWR--LSRQTEDEEKQTESGEKV-VAKAFEE 84

Query: 79  KIVVIMAGDDHPTRIARPSAS 99
           KI+VIMAG ++PT +A P A+
Sbjct: 85  KILVIMAGQNNPTFLATPVAA 105

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E8L0|GDU7_ARATH Protein GLUTAMINE DUMPER 7 OS=Arabidopsis thaliana GN=GDU7 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 7  DLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVAL--MFLACCHDKSSITGPSSGDQKDE 64
          D   P  + L   +SP+        ++ G+ A++L  M  AC H ++S     +   +++
Sbjct: 6  DSMVPVNSRLENMDSPILSKICAWGVMLGLFALSLFAMAYACYHKQTS-----NSCIEEK 60

Query: 65 KSAEAIDPPAALEPKIVVIMAGDDHPTRIARPS 97
          +  + +  P  +EPKIVVIMAG+++PT  A+P+
Sbjct: 61 QGKKQVLKPLDMEPKIVVIMAGNENPTFFAKPT 93

Probable subunit of an amino acid transporter involved in the regulation of the amino acid metabolism. Stimulates amino acid export by activating nonselective amino acid facilitators.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
255541916	88	conserved hypothetical protein [Ricinus	0.772	0.886	0.552	6e-19
224127552	106	predicted protein [Populus trichocarpa]	0.900	0.858	0.516	3e-16
255579958	115	conserved hypothetical protein [Ricinus	0.920	0.808	0.505	2e-15
388512417	98	unknown [Medicago truncatula]	0.851	0.877	0.477	2e-14
224127548	109	predicted protein [Populus trichocarpa]	0.782	0.724	0.468	2e-13
388496890	113	unknown [Medicago truncatula]	0.871	0.778	0.426	2e-13
255618736	118	conserved hypothetical protein [Ricinus	0.881	0.754	0.437	6e-13
224077576	106	predicted protein [Populus trichocarpa]	0.900	0.858	0.457	1e-12
255579956	124	conserved hypothetical protein [Ricinus	0.920	0.75	0.479	1e-12
298204421	119	unnamed protein product [Vitis vinifera]	0.801	0.680	0.458	2e-12

>gi|255541916|ref|XP_002512022.1| conserved hypothetical protein [Ricinus communis] gi|223549202|gb|EEF50691.1| conserved hypothetical protein [Ricinus communis]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 59/85 (69%), Gaps = 7/85 (8%)

Query: 16  LVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAA 75
           L QWN+PLPY+FGGL+L+ G ++VAL+ LAC H KSS        +K+EKS    D   A
Sbjct: 4   LAQWNTPLPYVFGGLVLIIGFMSVALIILACSHYKSS-------GEKEEKSRRTTDAVVA 56

Query: 76  LEPKIVVIMAGDDHPTRIARPSAST 100
           +E KI VIMAGD HPT +A+PSA T
Sbjct: 57  METKIAVIMAGDRHPTHLAKPSALT 81

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127552|ref|XP_002329306.1| predicted protein [Populus trichocarpa] gi|222870760|gb|EEF07891.1| predicted protein [Populus trichocarpa]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 5  ATDLTAPS-GAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKD 63
          A + TAP+  AG    NSP+PY+F  + L+FG++AVALM LAC + KSS T  ++  +  
Sbjct: 4  AFNSTAPAVHAGYQDRNSPIPYLFSSIGLMFGLVAVALMILACSYRKSSSTS-ATDPEVQ 62

Query: 64 EKSAEAIDPPAALEPKIVVIMAGDDHPTRIARP 96
          EKSA  ++  A +EPKIVVIMAGDD PT +A P
Sbjct: 63 EKSANQVEMKAEMEPKIVVIMAGDDRPTYLANP 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579958|ref|XP_002530814.1| conserved hypothetical protein [Ricinus communis] gi|223529635|gb|EEF31582.1| conserved hypothetical protein [Ricinus communis]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 66/99 (66%), Gaps = 6/99 (6%)

Query: 1  MRHVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGD 60
          MR V+   T    AG   W+SP+PY+FGGL L+ GVIAVAL+ LAC + K S++  S GD
Sbjct: 1  MRPVSNSTTT---AGFWHWSSPMPYLFGGLALMLGVIAVALIILACSYRK-SLSDESRGD 56

Query: 61 QKDEK--SAEAIDPPAALEPKIVVIMAGDDHPTRIARPS 97
            +EK  + +A     + EPKIVVIMAGDD+PT +A+P 
Sbjct: 57 GHEEKPGAKQAELTVDSDEPKIVVIMAGDDNPTFLAKPK 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512417|gb|AFK44270.1| unknown [Medicago truncatula]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 4/90 (4%)

Query: 12  SGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLAC-CHDKSSITGPSSGDQKDEKSAEAI 70
           +G G     SP PY+FGGL L+  +IA AL+ LAC C + S  T     ++KD K+ E +
Sbjct: 5   AGGGFKNVTSPTPYLFGGLALMLAIIAFALIILACTCQENSLSTNAGGYEEKDTKNVEMV 64

Query: 71  DPPAALEPKIVVIMAGDDHPTRIARPSAST 100
                LEPKIVVIMAGD +PT +A+P +ST
Sbjct: 65  ---VDLEPKIVVIMAGDTNPTYLAKPLSST 91

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127548|ref|XP_002329305.1| predicted protein [Populus trichocarpa] gi|222870759|gb|EEF07890.1| predicted protein [Populus trichocarpa]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%)

Query: 18 QWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAALE 77
           WNSP+ Y+F GL L+ G+I VAL+ LAC + KS         + DEK A+ ++     E
Sbjct: 20 HWNSPVAYVFVGLALMLGLITVALIILACSYRKSLSNSSRREAELDEKPAKQVEIQVDFE 79

Query: 78 PKIVVIMAGDDHPTRIARP 96
          PK+VVIMAGD++PT +A+P
Sbjct: 80 PKVVVIMAGDENPTYLAKP 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496890|gb|AFK36511.1| unknown [Medicago truncatula]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 14  AGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAID-P 72
           A L   +SP+PY+FGG+ LV GVIA+AL+ +A    K   +  S+ D++   +   +D  
Sbjct: 21  ASLRNLSSPIPYLFGGIALVLGVIAIALLIIAYSFRKQYSSSTSTNDEEKSSNMHVVDMD 80

Query: 73  PAALEPKIVVIMAGDDHPTRIARPSASTS 101
             +LEPKIVV+MAG+ +PT +A+P +S S
Sbjct: 81  QVSLEPKIVVVMAGESNPTYLAKPVSSIS 109

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255618736|ref|XP_002539968.1| conserved hypothetical protein [Ricinus communis] gi|223500659|gb|EEF22415.1| conserved hypothetical protein [Ricinus communis]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 7/96 (7%)

Query: 9   TAPS-GAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGP------SSGDQ 61
           +APS   G   WNSP+PY+FGGL L+ G+IA+ALM LAC +  SS +         + ++
Sbjct: 11  SAPSVNGGFQHWNSPVPYLFGGLALMLGLIAMALMILACSYKNSSPSNNSSPRDHQAAEE 70

Query: 62  KDEKSAEAIDPPAALEPKIVVIMAGDDHPTRIARPS 97
           K     +  +    +EPKIVVIMAGD +PT  A+P+
Sbjct: 71  KSRHDHKRAELQMEMEPKIVVIMAGDHNPTYFAKPA 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077576|ref|XP_002305310.1| predicted protein [Populus trichocarpa] gi|222848274|gb|EEE85821.1| predicted protein [Populus trichocarpa]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 3/94 (3%)

Query: 5  ATDLTAPSGA--GLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQK 62
          +T+ TA   A  G   WNSP+ Y+F GL  + G+I V+L+ LAC   KS     +S + +
Sbjct: 4  STNSTAGGSAHGGFWHWNSPVAYVFVGLAFMLGLITVSLIILACSSGKSLSNSSTS-EAE 62

Query: 63 DEKSAEAIDPPAALEPKIVVIMAGDDHPTRIARP 96
          DEKSA+ ++     EP IVVIMAGDD+PT +A+P
Sbjct: 63 DEKSAKQVEIQVEFEPNIVVIMAGDDNPTYLAKP 96

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579956|ref|XP_002530813.1| conserved hypothetical protein [Ricinus communis] gi|223529634|gb|EEF31581.1| conserved hypothetical protein [Ricinus communis]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 3/96 (3%)

Query: 1  MRHVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGD 60
          MR  +   TA + AG   W+SP+PY+FGGL L+ G+IAVAL+ LAC + K S++  S+ D
Sbjct: 1  MRPTSNSTTAAAAAGFWHWSSPIPYLFGGLALILGIIAVALIILACSYRK-SLSNESTED 59

Query: 61 QKDEK-SAEAIDPPA-ALEPKIVVIMAGDDHPTRIA 94
            +EK  A  ++    + EPKI VIMAGDD+PT +A
Sbjct: 60 GHEEKPGARQVEIMVDSDEPKIAVIMAGDDNPTFLA 95

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204421|emb|CBI16901.3| unnamed protein product [Vitis vinifera]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 4/85 (4%)

Query: 12 SGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAID 71
          S + + +WNS LPY+FGGL L+ G+I VAL+ L+C H K +   PS    KD+ +     
Sbjct: 8  SSSEIWRWNSLLPYLFGGLALIIGLIVVALIILSCSHKKRT---PSPDHDKDKPAKTICT 64

Query: 72 PPAALEPKIVVIMAGDDHPTRIARP 96
           P  L P++VVIMAGD++PT +A P
Sbjct: 65 EPDTL-PRVVVIMAGDENPTYLATP 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:505006270	156	GDU4 "AT2G24762" [Arabidopsis	0.801	0.519	0.464	1.1e-14
TAIR|locus:2124894	158	GDU1 "glutamine dumper 1" [Ara	0.782	0.5	0.451	5.6e-13
TAIR|locus:1005716497	111	GDU6 "AT3G30725" [Arabidopsis	0.772	0.702	0.45	3.9e-12
TAIR|locus:2149448	131	GDU5 "AT5G24920" [Arabidopsis	0.772	0.595	0.407	8.2e-12
TAIR|locus:504954872	148	GDU3 "AT5G57685" [Arabidopsis	0.970	0.662	0.386	2.2e-11
TAIR|locus:2117517	129	GDU2 "AT4G25760" [Arabidopsis	0.782	0.612	0.365	5.9e-09
TAIR|locus:2166635	97	GDU7 "AT5G38770" [Arabidopsis	0.861	0.896	0.326	3.4e-06

TAIR|locus:505006270 GDU4 "AT2G24762" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 39/84 (46%), Positives = 57/84 (67%)

Query:    19 WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEK--SAEAIDPP-AA 75
             W+SP+PY+FGGL  + G+IA AL+ LAC + + S +G  SG++ DE+  S   +    AA
Sbjct:    33 WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSTSGDDSGERVDEEKESRSGVKAASAA 92

Query:    76 LEPKIVVIMAGDDHPTRIARPSAS 99
              E K++VIMAGDD P  +A P+A+
Sbjct:    93 CEEKVLVIMAGDDLPRFLATPAAN 116

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2124894 GDU1 "glutamine dumper 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 37/82 (45%), Positives = 52/82 (63%)

Query:    19 WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDE-KSAEAIDPPA--A 75
             W+SP+PY+FGGL  + G+IA AL+ LAC + + S +G   G   DE K + + D  A  A
Sbjct:    30 WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSSGEEDGQNVDEEKESRSGDKAANGA 89

Query:    76 LEPKIVVIMAGDDHPTRIARPS 97
              E K +VIMAG+D P  +A P+
Sbjct:    90 YEEKFLVIMAGEDLPRYLATPA 111

GO:0005634 "nucleus" evidence=IDA

GO:0010585 "glutamine secretion" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISS;IDA

GO:0080143 "regulation of amino acid export" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1005716497 GDU6 "AT3G30725" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/80 (45%), Positives = 51/80 (63%)

Query:    19 WNSPLPYMFGGLLLVFGVIAVALMFLACCHDK-SSITGPSSGDQKDEKSAEAIDP-PAAL 76
             W SP+PY+FGGL L+  +IA+AL+ L C H K SS +  +  D++D+   +   P     
Sbjct:    10 WKSPVPYLFGGLFLLVLLIALALLSLVCTHQKPSSSSNNNHMDEEDDVGDKDAKPITREY 69

Query:    77 EPKIVVIMAGDDHPTRIARP 96
              PKIVVI+AGD+ PT +A P
Sbjct:    70 LPKIVVILAGDNKPTCLAVP 89

GO:0003674 "molecular_function" evidence=ND

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2149448 GDU5 "AT5G24920" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 33/81 (40%), Positives = 53/81 (65%)

Query:    19 WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQKDEKSAEAIDPPAALEP 78
             W +P+PY+FGGL  + G+IA AL+ LAC + +  ++  +  ++K  +S E +    A E 
Sbjct:    28 WRTPVPYLFGGLAAMLGLIAFALLLLACSYWR--LSRQTEDEEKQTESGEKV-VAKAFEE 84

Query:    79 KIVVIMAGDDHPTRIARPSAS 99
             KI+VIMAG ++PT +A P A+
Sbjct:    85 KILVIMAGQNNPTFLATPVAA 105

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:504954872 GDU3 "AT5G57685" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 41/106 (38%), Positives = 56/106 (52%)

Query:     3 HVATDLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGPSSGDQK 62
             +V  + T   G     W+SP+PY+FGGL  + G+IA AL+ LAC + + S       +Q 
Sbjct:    12 NVEGNRTTMGGGPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQS 71

Query:    63 DEKSAEAID--P------PAALEPKIVVIMAGDDHPTRIARPSAST 100
              E+  E  D  P      P AL  K +VIMAG+  PT +A PS  T
Sbjct:    72 RERDLEVGDVKPDKTAVKPVALPEKFLVIMAGNVKPTYLATPSVKT 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016021 "integral to membrane" evidence=RCA

GO:0032940 "secretion by cell" evidence=ISS

GO:0080143 "regulation of amino acid export" evidence=IMP

GO:0009615 "response to virus" evidence=IMP

GO:0019048 "virus-host interaction" evidence=IMP

TAIR|locus:2117517 GDU2 "AT4G25760" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/82 (36%), Positives = 45/82 (54%)

Query:    19 WNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSITGP---SSGDQKDEKSAEAIDPPAA 75
             W+SP+PY+FGGL  +  +I VAL+ LAC + + S +      +GD     +         
Sbjct:    28 WHSPVPYLFGGLAAMLALICVALLILACSYWRLSGSAERDLEAGDDAKPDNDTNKTKHTE 87

Query:    76 LEPKIVVIMAGDDHPTRIARPS 97
             +  K +VIMAGD  PT +A P+
Sbjct:    88 MPEKFLVIMAGDVRPTYLATPA 109

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080143 "regulation of amino acid export" evidence=IMP

TAIR|locus:2166635 GDU7 "AT5G38770" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 30/92 (32%), Positives = 50/92 (54%)

Query:     7 DLTAPSGAGLVQWNSPLPYMFGGLLLVFGVIAVALMFLA-CCHDKSSITGPSSGDQKDEK 65
             D   P  + L   +SP+        ++ G+ A++L  +A  C+ K   T  S  ++K  K
Sbjct:     6 DSMVPVNSRLENMDSPILSKICAWGVMLGLFALSLFAMAYACYHKQ--TSNSCIEEKQGK 63

Query:    66 SAEAIDPPAALEPKIVVIMAGDDHPTRIARPS 97
               + +  P  +EPKIVVIMAG+++PT  A+P+
Sbjct:    64 --KQVLKPLDMEPKIVVIMAGNENPTFFAKPT 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 22  0.41    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.29u 0.17s 11.46t   Elapsed:  00:00:01
  Total cpu time:  11.29u 0.17s 11.46t   Elapsed:  00:00:01
  Start:  Mon May 20 15:41:25 2013   End:  Mon May 20 15:41:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0080143 "regulation of amino acid export" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_123000020 hypothetical protein (106 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	92.14
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	90.17
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	86.62

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=92.14  E-value=0.14  Score=36.98  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=23.3

Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034219           18 QWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKS   51 (101)
Q Consensus        18 ~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~   51 (101)
                      .+..|+ -....|++|.|+|++.|||+-|-+|+.
T Consensus        60 ~fs~~~-i~~Ii~gv~aGvIg~Illi~y~irR~~   92 (122)
T PF01102_consen   60 RFSEPA-IIGIIFGVMAGVIGIILLISYCIRRLR   92 (122)
T ss_dssp             SSS-TC-HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             Cccccc-eeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence            444454 244568899999999999988887554

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=90.17  E-value=0.65  Score=27.83  Aligned_cols=28  Identities=18%  Similarity=0.577  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034219           26 MFGGLLLVFGVIAVALMFLACCHDKSSI   53 (101)
Q Consensus        26 LFgGLa~MlgLIAvALliLaCSy~k~~s   53 (101)
                      ...|..+-|.+|.+..++-+|-|||...
T Consensus         8 IIv~V~vg~~iiii~~~~YaCcykk~~~   35 (38)
T PF02439_consen    8 IIVAVVVGMAIIIICMFYYACCYKKHRR   35 (38)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            5677778888888888999999999753

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=86.62  E-value=0.58  Score=33.15  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             ccccCChhHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034219           17 VQWNSPLPYMFGGLLLVFGVIAVALMFLACCHDKSSI   53 (101)
Q Consensus        17 ~~W~SPvPYLFgGLa~MlgLIAvALliLaCSy~k~~s   53 (101)
                      +..-+=.|||-+|=+++|.||-++|+.-.|.+||.+.
T Consensus        36 S~~~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K~~~   72 (98)
T PF07204_consen   36 SSFVAYWPYLAAGGGLILILIIIALVCCCRAKHKTSA   72 (98)
T ss_pred             ehHHhhhHHhhccchhhhHHHHHHHHHHhhhhhhhHh
Confidence            5566678999999888888888888777777788543

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	87.66

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=87.66  E-value=1.7  Score=26.65  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=21.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHH---HhhhcccCC
Q 034219           21 SPLPYMFGGLLLVFGVIAVALMFL---ACCHDKSSI   53 (101)
Q Consensus        21 SPvPYLFgGLa~MlgLIAvALliL---aCSy~k~~s   53 (101)
                      +++|+-..-++++.||+-++|+++   -|-+.|...
T Consensus         8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~   43 (54)
T 2knc_A            8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR   43 (54)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            356666666677777777776665   566666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00