Citrus Sinensis ID: 034242

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MQQLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHccEEEEEEccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEEHHHHHHHHHcccccEEEEccccccHcccHHHHHHHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHHccEEEccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MQQLKICATRRRRMAYSRTETYvllepgveekfVTEEELKARLKYWLENWagqvgkgglppdlakFATIDEAVAFLITNVCELelqgdvgsiQWYEVRLE
Flexible Loop (DISEMBL)
mqqlkicatrrrrmaysrtetyvllepgveekfvTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELelqgdvgsiqwYEVRLE
Low Complexity Region (SEG)
MQQLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE
Disordered region (IsUnstruct)
*****ICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEV***
Disordered Region (DISOPRED)
********TRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE
Disordered Region (DISEMBL)
MQQLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE
Disordered Region (DISPRO)
MQQLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQQLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
359488522	151	PREDICTED: uncharacterized protein LOC10	0.92	0.609	0.690	2e-30
297805830	157	hypothetical protein ARALYDRAFT_916402 [	0.94	0.598	0.602	2e-29
270342082	152	hypothetical protein [Phaseolus vulgaris	0.92	0.605	0.666	1e-28
388494090	151	unknown [Lotus japonicus]	0.91	0.602	0.687	5e-28
21553859	156	unknown [Arabidopsis thaliana]	0.93	0.596	0.602	1e-27
18421842	156	chlororespiratory reduction 7 [Arabidops	0.93	0.596	0.602	2e-27
356573538	152	PREDICTED: uncharacterized protein LOC10	0.92	0.605	0.677	2e-26
118489214	162	unknown [Populus trichocarpa x Populus d	0.94	0.580	0.606	5e-26
224080113	99	predicted protein [Populus trichocarpa]	0.94	0.949	0.606	1e-25
326494344	151	predicted protein [Hordeum vulgare subsp	0.89	0.589	0.595	2e-25

>gi|359488522|ref|XP_002280011.2| PREDICTED: uncharacterized protein LOC100249838 [Vitis vinifera] gi|296082204|emb|CBI21209.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 80/97 (82%), Gaps = 5/97 (5%)

Query: 4   LKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDL 63
           +K  A RRRR AYS+TETYVL+EPG +E+FV++EELKARLK WLENW G+     LPPDL
Sbjct: 60  VKSYAMRRRR-AYSQTETYVLMEPGKDEEFVSQEELKARLKGWLENWPGK----ALPPDL 114

Query: 64  AKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           AKF TID+AV +L+  VCELE+ GDVGSIQWYE+RLE
Sbjct: 115 AKFQTIDDAVMYLVKAVCELEIDGDVGSIQWYEIRLE 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805830|ref|XP_002870799.1| hypothetical protein ARALYDRAFT_916402 [Arabidopsis lyrata subsp. lyrata] gi|297316635|gb|EFH47058.1| hypothetical protein ARALYDRAFT_916402 [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 77/98 (78%), Gaps = 4/98 (4%)

Query: 3   QLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 62
             ++CATRRRR+ YS ++TYVLLE G +E+FV+E+ELKA+L+ WLENW        LPPD
Sbjct: 64  HFRVCATRRRRVHYSNSDTYVLLEAGQDEQFVSEDELKAKLRGWLENWP----VNSLPPD 119

Query: 63  LAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           LA+F  +DEAV FL+  VCELE+ G+VGS+QWY+VRLE
Sbjct: 120 LARFNDLDEAVDFLVKAVCELEIHGEVGSVQWYQVRLE 157

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270342082|gb|ACZ74666.1| hypothetical protein [Phaseolus vulgaris]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 4/96 (4%)

Query: 5   KICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLA 64
           K+ A RRR+ A  RTETYVLLEPG +E+FV+EEELKA LK  LENW G+V    LPPDL+
Sbjct: 61  KVFAARRRKRANERTETYVLLEPGKDERFVSEEELKATLKELLENWPGKV----LPPDLS 116

Query: 65  KFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           ++  IDEAV+FL+  VCELE+ GDVGS+QWYEVRLE
Sbjct: 117 RYEDIDEAVSFLVRYVCELEIDGDVGSVQWYEVRLE 152

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494090|gb|AFK35111.1| unknown [Lotus japonicus]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 77/96 (80%), Gaps = 5/96 (5%)

Query: 5   KICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLA 64
           K+ A RRRR A  RTETYVLLEPG +EKFV+EEELKA LK  L NW G+     LPPDLA
Sbjct: 61  KLFALRRRR-ANERTETYVLLEPGEDEKFVSEEELKATLKERLTNWPGK----ALPPDLA 115

Query: 65  KFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           ++ TIDEAV+FL+ +VCELE+ GDVGS+QWYEVRLE
Sbjct: 116 RYETIDEAVSFLVRSVCELEIDGDVGSVQWYEVRLE 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553859|gb|AAM62952.1| unknown [Arabidopsis thaliana]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 5/98 (5%)

Query: 3   QLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 62
              +CATRRRR+ +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW        LPPD
Sbjct: 64  HFSVCATRRRRV-HSNSDTYVLLEAGQDEQFVTEDELKAKLREWLENWPV----NSLPPD 118

Query: 63  LAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           LA+F  +DEAV FL+  VCELE+ G+VGS+QWY+VRLE
Sbjct: 119 LARFDDLDEAVDFLVKAVCELEIDGEVGSVQWYQVRLE 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18421842|ref|NP_568563.1| chlororespiratory reduction 7 [Arabidopsis thaliana] gi|9758849|dbj|BAB09375.1| unnamed protein product [Arabidopsis thaliana] gi|17529164|gb|AAL38808.1| unknown protein [Arabidopsis thaliana] gi|21281014|gb|AAM45076.1| unknown protein [Arabidopsis thaliana] gi|332007025|gb|AED94408.1| chlororespiratory reduction 7 [Arabidopsis thaliana]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 5/98 (5%)

Query: 3   QLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 62
              +CATRRRR+ +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW        LPPD
Sbjct: 64  HFSVCATRRRRV-HSNSDTYVLLEAGQDEQFVTEDELKAKLRGWLENWP----VNSLPPD 118

Query: 63  LAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           LA+F  +DEAV FL+  VCELE+ G+VGS+QWY+VRLE
Sbjct: 119 LARFDDLDEAVDFLVKAVCELEIDGEVGSVQWYQVRLE 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573538|ref|XP_003554915.1| PREDICTED: uncharacterized protein LOC100801516 [Glycine max]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 78/96 (81%), Gaps = 4/96 (4%)

Query: 5   KICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLA 64
           K+ A RRRR A  RTETYVLLEPG +E+FV+EEELKA LK  LENW G+V    LPPDL+
Sbjct: 61  KVFALRRRRRANERTETYVLLEPGQDERFVSEEELKATLKELLENWPGKV----LPPDLS 116

Query: 65  KFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           ++  ID+AV+FL+ +VCELE+ GDVGSIQWYEVRLE
Sbjct: 117 RYENIDDAVSFLVRSVCELEIDGDVGSIQWYEVRLE 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489214|gb|ABK96413.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 5/99 (5%)

Query: 2   QQLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPP 61
             +K+   RRRR+ + +T TYVLLEPG +EKFV+EEELKA LK +LENW     +  LP 
Sbjct: 69  NSVKVFGVRRRRI-HQKTGTYVLLEPGEDEKFVSEEELKAVLKGYLENWP----RPTLPL 123

Query: 62  DLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           DLAKF T+D+A +FL+++VCELE+ GDVGS+QWYEVRLE
Sbjct: 124 DLAKFETVDDAASFLVSSVCELEIDGDVGSVQWYEVRLE 162

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080113|ref|XP_002306021.1| predicted protein [Populus trichocarpa] gi|222848985|gb|EEE86532.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 77/99 (77%), Gaps = 5/99 (5%)

Query: 2   QQLKICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPP 61
             +K+   RRRR+ + +T TYVLLEPG +EKFV+EEELKA LK +LENW     +  LP 
Sbjct: 6   NSVKVFGVRRRRI-HQKTGTYVLLEPGEDEKFVSEEELKAVLKGYLENWP----RPTLPL 60

Query: 62  DLAKFATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
           DLAKF T+D+A +FL+++VCELE+ GDVGS+QWYEVRLE
Sbjct: 61  DLAKFETVDDAASFLVSSVCELEIDGDVGSVQWYEVRLE 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326494344|dbj|BAJ90441.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326520968|dbj|BAJ92847.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 78/94 (82%), Gaps = 5/94 (5%)

Query: 7   CATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKF 66
           CA RRRR A  +++TYVLLEPG+EE+FV++EEL+ RL+ WLE W G    G LPPDLA+F
Sbjct: 63  CAARRRR-ADIQSDTYVLLEPGMEEEFVSKEELEERLRGWLERWPG----GALPPDLARF 117

Query: 67  ATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
            T+D+AV++L+ +VCELE+ G+VGS+QWY+V++E
Sbjct: 118 DTVDDAVSYLVRSVCELEVDGEVGSVQWYQVQIE 151

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2157250	156	CRR7 "AT5G39210" [Arabidopsis	0.9	0.576	0.621	1.3e-27

TAIR|locus:2157250 CRR7 "AT5G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/95 (62%), Positives = 76/95 (80%)

Query:     6 ICATRRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAK 65
             +CATRRRR+ +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW        LPPDLA+
Sbjct:    67 VCATRRRRV-HSNSDTYVLLEAGQDEQFVTEDELKAKLRGWLENWP----VNSLPPDLAR 121

Query:    66 FATIDEAVAFLITNVCELELQGDVGSIQWYEVRLE 100
             F  +DEAV FL+  VCELE+ G+VGS+QWY+VRLE
Sbjct:   122 FDDLDEAVDFLVKAVCELEIDGEVGSVQWYQVRLE 156


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100       100   0.00091  102 3  11 22  0.40    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  126 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.56u 0.10s 10.66t   Elapsed:  00:00:00
  Total cpu time:  10.56u 0.10s 10.66t   Elapsed:  00:00:00
  Start:  Mon May 20 15:46:19 2013   End:  Mon May 20 15:46:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0010275 "NAD(P)H dehydrogenase complex assembly" evidence=IGI;IMP

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=IGI

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038032001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (158 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•			•		0.702
	ndhM	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; NDH-1 shuttles elect [...] (208 aa)			•				•		0.616
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•			•		0.604
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•					0.600
	GSVIVG00028771001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (378 aa)			•	•					0.581
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•			•		0.575
	GSVIVG00005655001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_155, whole gen [...] (254 aa)				•			•		0.568
	GSVIVG00023239001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (219 aa)			•	•					0.550
	GSVIVG00038203001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (175 aa)			•	•					0.537
	GSVIVG00030316001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (102 aa)			•	•					0.537

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
pfam12095	83	pfam12095, DUF3571, Protein of unknown function (D	2e-22

>gnl|CDD|192936 pfam12095, DUF3571, Protein of unknown function (DUF3571)

 Score = 82.7 bits (205), Expect = 2e-22
 Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 20  ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 79
           + YV+LEPG  E+F+T  EL A LK WL           LP DLAK  ++D     L+  
Sbjct: 10  DHYVVLEPGQPEQFLTPAELLAWLKEWLTR------LDSLPADLAKLPSLDAQAQRLLDT 63

Query: 80  VCELELQGDVGSIQWYEVRLE 100
            CELE+ G   ++QWY VRLE
Sbjct: 64  ACELEI-GPGLTLQWYAVRLE 83

This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PF12095	83	DUF3571: Protein of unknown function (DUF3571); In	100.0
PHA03373	247	tegument protein; Provisional	84.06

>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised

Probab=100.00  E-value=4.9e-45  Score=249.35  Aligned_cols=79  Identities=51%  Similarity=0.993  Sum_probs=58.1

Q ss_pred             hhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccccccCCceeEE
Q 034242           14 MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ   93 (100)
Q Consensus        14 ~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pg~~~lQ   93 (100)
                      -|| ++|||||||||+||||||++||++|||+||++.      ++||+||+||+|+++||+||++|+|||||||| +|||
T Consensus         5 lm~-~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~------~~LP~dL~~~~s~~~qa~~Lldt~CeLeigpg-~~lQ   76 (83)
T PF12095_consen    5 LMY-QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQ------DDLPPDLAKFSSVEEQAQYLLDTACELEIGPG-GYLQ   76 (83)
T ss_dssp             -S------EEEEESSS-SEEE-HHHHHHHHHHHHHHT------TTS-HHHHH---HHHHHHHHHHH---EEEETT-EEEE
T ss_pred             hhh-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcC------CCCCHHHHhCCCHHHHHHHHHHhceeeecCCC-CEEE
Confidence            488 999999999999999999999999999999994      48999999999999999999999999999999 6999


Q ss_pred             EEEEeeC
Q 034242           94 WYEVRLE  100 (100)
Q Consensus        94 WYaVRLE  100 (100)
                      |||||||
T Consensus        77 WyaVRLE   83 (83)
T PF12095_consen   77 WYAVRLE   83 (83)
T ss_dssp             EEE----
T ss_pred             EEEEecC
Confidence            9999998

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.

>PHA03373 tegument protein; Provisional

Probab=84.06  E-value=2.3  Score=34.63  Aligned_cols=58  Identities=31%  Similarity=0.419  Sum_probs=47.4

Q ss_pred             hhhhhhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHH
Q 034242           10 RRRRMAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLIT   78 (100)
Q Consensus        10 ~~~~~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lld   78 (100)
                      =|||-+.  .-.||+|-|..+   +..+||.++|++-..+.      +-.|.||..|.-..+-..+|+.
T Consensus        13 crr~~~~--~a~Y~lL~~sed---ve~~eL~~flee~f~~l------Git~~Di~~~~rDtEv~khLL~   70 (247)
T PHA03373         13 CRRRAPD--GAEYVLLRPSED---VELAELEAFLEENFKDF------GITQADIRSLSRDTEVVKHLLQ   70 (247)
T ss_pred             hhccCCC--CCceEEecCcch---hhHHHHHHHHHHhHHhc------CcCHHHHHHHhhhhHHHHHHHH
Confidence            3344444  567999998763   77899999999988888      4899999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
2krx_A	94	Solution Nmr Structure Of Asl3597 From Nostoc Sp. P		5e-05

>pdb|2KRX|A Chain A, Solution Nmr Structure Of Asl3597 From Nostoc Sp. Pcc7120. Northeast Structural Genomics Consortium Target Id Nsr244 Length = 94

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 18  RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLI 77
           + + +V+LE    E+F+T  EL  +LK  LE    ++    LP +L K  ++      LI
Sbjct: 8   QQDNFVVLETNQPEQFLTTIELLEKLKGELE----KISFSDLPLELQKLDSLPAQAQHLI 63
Query: 78  TNVCELELQGDVGS---IQWYEVRLE 100
              CEL    DVG+   +QWY VRLE
Sbjct: 64  DTSCEL----DVGAGKYLQWYAVRLE 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
2krx_A	94	ASL3597 protein; structural genomics, PSI-2, prote	1e-28

>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP} Length = 94

 Score = 98.3 bits (245), Expect = 1e-28
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 20  ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 79
           + +V+LE    E+F+T  EL  +LK  LE  +       LP +L K  ++      LI  
Sbjct: 10  DNFVVLETNQPEQFLTTIELLEKLKGELEKISFSD----LPLELQKLDSLPAQAQHLIDT 65

Query: 80  VCELELQGDVGSIQWYEVRLE 100
            CEL++ G    +QWY VRLE
Sbjct: 66  SCELDV-GAGKYLQWYAVRLE 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
2krx_A	94	ASL3597 protein; structural genomics, PSI-2, prote	100.0

>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}

Probab=100.00  E-value=1.1e-45  Score=256.48  Aligned_cols=81  Identities=36%  Similarity=0.613  Sum_probs=78.2

Q ss_pred             hhhccCCcEEEecCCCCccccCHHHHHHHHHHHHHhhcccCCCCCCChhhhccCCHHHHHHHHHHccccccccCCceeEE
Q 034242           14 MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ   93 (100)
Q Consensus        14 ~my~q~D~YVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pg~~~lQ   93 (100)
                      -|| |+|||||||||+||||||++||++|||+||+++|+    ++||+||+||+|+++||+||+||+|||||+||+ |||
T Consensus         5 lmy-q~D~yVvLEp~~~EqfLT~~Ell~~Lk~~L~~~~~----~~LP~dL~~~~s~~~qaq~Lldt~CELei~pG~-~lQ   78 (94)
T 2krx_A            5 LMY-QQDNFVVLETNQPEQFLTTIELLEKLKGELEKISF----SDLPLELQKLDSLPAQAQHLIDTSCELDVGAGK-YLQ   78 (94)
T ss_dssp             CSC-CCCCEEEEESSSCSEEECHHHHHHHHHHHHHHSCT----TTSCHHHHHCCCHHHHHHHHHHHCCCEEEETTE-EEE
T ss_pred             hhc-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHhCcc----ccCCHHHHhCCCHHHHHHHHHHheeeeeeCCCC-EEE
Confidence            389 99999999999999999999999999999999995    499999999999999999999999999999995 999


Q ss_pred             EEEEeeC
Q 034242           94 WYEVRLE  100 (100)
Q Consensus        94 WYaVRLE  100 (100)
                      |||||||
T Consensus        79 WYaVRLE   85 (94)
T 2krx_A           79 WYAVRLE   85 (94)
T ss_dssp             EEECCCC
T ss_pred             EEEEEEe
Confidence            9999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00